-- dump date 20120504_141541 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 115711000001 SEQ_END SEQ_END NC_002179.2 1229853 1229853 DR NC_002179.2; contig end 1229853..1229853 Chlamydophila pneumoniae AR39 NP_444554.1 CDS CP0001 NC_002179.2 201 1199 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 201..1199 Chlamydophila pneumoniae AR39 963624 NP_444555.1 CDS CP0002 NC_002179.2 1220 2623 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(1220..2623) Chlamydophila pneumoniae AR39 963625 NP_444556.1 CDS CP0003 NC_002179.2 2694 3122 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(2694..3122) Chlamydophila pneumoniae AR39 963626 NP_444557.1 CDS CP0004 NC_002179.2 3235 5403 D contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor 3235..5403 Chlamydophila pneumoniae AR39 963627 NP_444558.1 CDS CP0005 NC_002179.2 5537 6724 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 5537..6724 Chlamydophila pneumoniae AR39 963628 NP_444559.1 CDS CP0006 NC_002179.2 6714 7727 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 6714..7727 Chlamydophila pneumoniae AR39 963629 NP_444560.1 CDS CP0007 NC_002179.2 7687 10839 R similar to GB:L42023 SP:P45157 PID:1007310 PID:1221453 PID:1574781; identified by sequence similarity; exodeoxyribonuclease V, beta chain complement(7687..10839) Chlamydophila pneumoniae AR39 963630 NP_444561.1 CDS CP0008 NC_002179.2 10826 13900 R similar to ; identified by sequence similarity; exodeoxyribonuclease V, gamma subunit complement(10826..13900) Chlamydophila pneumoniae AR39 963631 NP_444562.1 CDS CP0009 NC_002179.2 13887 15596 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 13887..15596 Chlamydophila pneumoniae AR39 963632 NP_444563.1 CDS CP0011 NC_002179.2 15917 16585 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 15917..16585 Chlamydophila pneumoniae AR39 963633 NP_444564.1 CDS CP0012 NC_002179.2 16667 17641 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(16667..17641) Chlamydophila pneumoniae AR39 963634 NP_444565.1 CDS rpsD NC_002179.2 17858 18487 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 17858..18487 Chlamydophila pneumoniae AR39 963635 NP_444566.1 CDS CP0014 NC_002179.2 18606 19487 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(18606..19487) Chlamydophila pneumoniae AR39 963636 NP_444567.1 CDS CP0015 NC_002179.2 19822 19998 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(19822..19998) Chlamydophila pneumoniae AR39 963637 NP_444568.1 CDS CP0016 NC_002179.2 19982 21625 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 19982..21625 Chlamydophila pneumoniae AR39 963638 NP_444569.1 CDS CP0017 NC_002179.2 21728 22996 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 21728..22996 Chlamydophila pneumoniae AR39 963106 NP_444570.1 CDS CP0018 NC_002179.2 23108 25063 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 23108..25063 Chlamydophila pneumoniae AR39 963639 NP_444571.1 CDS CP0019 NC_002179.2 25390 28008 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(25390..28008) Chlamydophila pneumoniae AR39 963640 NP_444572.1 CDS CP0020 NC_002179.2 28270 30708 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 28270..30708 Chlamydophila pneumoniae AR39 963641 NP_444573.1 CDS CP0021 NC_002179.2 30774 31001 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 30774..31001 Chlamydophila pneumoniae AR39 963642 NP_444574.1 CDS CP0022 NC_002179.2 31058 31882 D hypothetical protein; identified by Glimmer2; hypothetical protein 31058..31882 Chlamydophila pneumoniae AR39 963643 NP_444575.1 CDS CP0023 NC_002179.2 31879 32601 R ABC transporter ATP-binding protein; identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein complement(31879..32601) Chlamydophila pneumoniae AR39 963644 NP_444576.1 CDS CP0024 NC_002179.2 32608 33096 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(32608..33096) Chlamydophila pneumoniae AR39 963645 NP_444577.1 CDS CP0025 NC_002179.2 33093 33908 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(33093..33908) Chlamydophila pneumoniae AR39 963646 NP_444578.1 CDS CP0026 NC_002179.2 34346 34582 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(34346..34582) Chlamydophila pneumoniae AR39 963647 NP_444579.1 CDS CP0027 NC_002179.2 34692 35669 R similar to SP:P33643 PID:1236631 GB:U00096 PID:1788946; identified by sequence similarity; ribosomal large subunit pseudouridine synthase D complement(34692..35669) Chlamydophila pneumoniae AR39 963648 NP_444580.1 CDS CP0028 NC_002179.2 35956 36276 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(35956..36276) Chlamydophila pneumoniae AR39 963649 NP_444581.1 CDS CP0029 NC_002179.2 36276 36575 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(36276..36575) Chlamydophila pneumoniae AR39 963651 NP_444582.1 CDS CP0030 NC_002179.2 36680 38116 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(36680..38116) Chlamydophila pneumoniae AR39 963652 NP_444583.1 CDS CP0031 NC_002179.2 38120 39928 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(38120..39928) Chlamydophila pneumoniae AR39 963653 NP_444584.1 CDS hemA NC_002179.2 40478 41497 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 40478..41497 Chlamydophila pneumoniae AR39 963654 NP_444585.1 CDS CP0033 NC_002179.2 41864 42256 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 41864..42256 Chlamydophila pneumoniae AR39 963655 NP_444586.1 CDS CP0034 NC_002179.2 42270 44807 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 42270..44807 Chlamydophila pneumoniae AR39 963656 NP_444587.1 CDS CP0035 NC_002179.2 44854 45102 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 44854..45102 Chlamydophila pneumoniae AR39 963657 NP_444588.1 CDS CP0036 NC_002179.2 45124 45378 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 45124..45378 Chlamydophila pneumoniae AR39 963658 NP_444589.1 CDS CP0037 NC_002179.2 45397 45846 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 45397..45846 Chlamydophila pneumoniae AR39 963659 NP_444590.1 CDS CP0038 NC_002179.2 45880 46554 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 45880..46554 Chlamydophila pneumoniae AR39 963660 NP_444591.1 CDS CP0039 NC_002179.2 46556 47884 D similar to SP:P21211 GB:U02499 SP:P21212 SP:P40290 PID:437202; identified by sequence similarity; type III secretion system ATPase 46556..47884 Chlamydophila pneumoniae AR39 963661 NP_444592.1 CDS CP0040 NC_002179.2 47902 48408 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 47902..48408 Chlamydophila pneumoniae AR39 963662 NP_444593.1 CDS CP0041 NC_002179.2 48412 49254 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 48412..49254 Chlamydophila pneumoniae AR39 963663 NP_444594.1 CDS CP0042 NC_002179.2 49264 50379 D type III secretion translocase SctQ; identified by match to PFAM protein family HMM PF01052; type III secretion system protein 49264..50379 Chlamydophila pneumoniae AR39 963664 NP_444595.1 CDS CP0043 NC_002179.2 50395 51903 D serine/threonine-protein kinase; identified by match to PFAM protein family HMM PF00069; serine/threonine-protein kinase 50395..51903 Chlamydophila pneumoniae AR39 963665 NP_444596.1 CDS CP0044 NC_002179.2 51900 54659 D similar to GP:3978475; identified by sequence similarity; type III secretion protein SctC 51900..54659 Chlamydophila pneumoniae AR39 963666 NP_444597.1 CDS CP0045 NC_002179.2 54910 55986 R similar to GB:D26185 SP:P37570 GB:U02604 PID:442359 PID:467473; identified by sequence similarity; ATP:guanido phosphotransferase complement(54910..55986) Chlamydophila pneumoniae AR39 963667 NP_444598.1 CDS CP0046 NC_002179.2 55973 56488 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(55973..56488) Chlamydophila pneumoniae AR39 963668 NP_444599.1 CDS frr NC_002179.2 56861 57403 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(56861..57403) Chlamydophila pneumoniae AR39 963669 NP_444600.1 CDS pyrH NC_002179.2 57381 58127 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(57381..58127) Chlamydophila pneumoniae AR39 963670 NP_444601.1 CDS tsf NC_002179.2 58135 58983 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(58135..58983) Chlamydophila pneumoniae AR39 963671 NP_444602.1 CDS rpsB NC_002179.2 58983 59816 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(58983..59816) Chlamydophila pneumoniae AR39 963672 NP_444603.1 CDS CP0051 NC_002179.2 60200 61369 R similar to GB:AE001363; identified by sequence similarity; major outer membrane protein, porin complement(60200..61369) Chlamydophila pneumoniae AR39 963673 NP_444604.1 CDS CP0052 NC_002179.2 61985 65257 D penicillin-binding protein, ; identified by match to PFAM protein family HMM PF00905; penicillin-binding protein 61985..65257 Chlamydophila pneumoniae AR39 963674 NP_444605.1 CDS CP0053 NC_002179.2 65328 66347 D type III secretion chaperone, ; identified by match to PFAM protein family HMM PF00515; type III secretion chaperone 65328..66347 Chlamydophila pneumoniae AR39 963675 NP_444606.1 CDS CP0054 NC_002179.2 66672 68126 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 66672..68126 Chlamydophila pneumoniae AR39 963676 NP_444607.1 CDS CP0055 NC_002179.2 68132 68902 D ABC transporter ATP-binding protein; identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein 68132..68902 Chlamydophila pneumoniae AR39 963677 NP_444608.1 CDS CP0056 NC_002179.2 68904 70151 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 68904..70151 Chlamydophila pneumoniae AR39 963685 NP_444609.1 CDS CP0057 NC_002179.2 70180 71400 D aminotransferase, class V; identified by match to PFAM protein family HMM PF00266; aminotransferase, class V 70180..71400 Chlamydophila pneumoniae AR39 963686 NP_444610.1 CDS CP0058 NC_002179.2 71444 72202 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(71444..72202) Chlamydophila pneumoniae AR39 963689 NP_444611.1 CDS CP0059 NC_002179.2 72367 73020 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(72367..73020) Chlamydophila pneumoniae AR39 963694 NP_444612.1 CDS CP0060 NC_002179.2 73223 73411 D hypothetical protein; identified by Glimmer2; hypothetical protein 73223..73411 Chlamydophila pneumoniae AR39 963698 NP_444613.1 CDS CP0061 NC_002179.2 73364 73477 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(73364..73477) Chlamydophila pneumoniae AR39 963699 NP_444614.1 CDS CP0062 NC_002179.2 73546 74406 D similar to GB:D26185 SP:P26497 GB:M59938 PID:143640 PID:40031; identified by sequence similarity; ParB family chromosome partioning protein 73546..74406 Chlamydophila pneumoniae AR39 963700 NP_444615.1 CDS CP0063 NC_002179.2 74387 74590 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(74387..74590) Chlamydophila pneumoniae AR39 963702 NP_444616.1 CDS CP0064 NC_002179.2 74662 75636 R similar to SP:P42065 PID:677944 GB:AL009126; identified by sequence similarity; peptide ABC transporter ATP-binding protein complement(74662..75636) Chlamydophila pneumoniae AR39 963711 NP_444617.1 CDS CP0065 NC_002179.2 75626 76600 R similar to GB:M57689 SP:P24136 GB:X56347 PID:143607 PID:580898; identified by sequence similarity; peptide ABC transporter ATP-binding protein complement(75626..76600) Chlamydophila pneumoniae AR39 963715 NP_444618.1 CDS CP0066 NC_002179.2 76655 77329 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 76655..77329 Chlamydophila pneumoniae AR39 963719 NP_444619.1 CDS CP0067 NC_002179.2 77336 78616 D phosphate permease family protein; identified by match to PFAM protein family HMM PF01384; phosphate permease family protein 77336..78616 Chlamydophila pneumoniae AR39 963720 NP_444620.1 CDS pgk NC_002179.2 78654 79862 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 78654..79862 Chlamydophila pneumoniae AR39 963723 NP_444621.1 CDS CP0069 NC_002179.2 80264 80905 D hypothetical protein; identified by Glimmer2; hypothetical protein 80264..80905 Chlamydophila pneumoniae AR39 963726 NP_444622.1 CDS CP0070 NC_002179.2 81183 82331 D hypothetical protein; identified by Glimmer2; hypothetical protein 81183..82331 Chlamydophila pneumoniae AR39 963729 NP_444623.1 CDS CP0071 NC_002179.2 82367 83536 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 82367..83536 Chlamydophila pneumoniae AR39 963730 NP_444624.1 CDS CP0072 NC_002179.2 83665 84819 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 83665..84819 Chlamydophila pneumoniae AR39 963731 NP_444625.1 CDS CP0073 NC_002179.2 84916 86010 D Nol1/Nop2/Sun family protein; identified by match to PFAM protein family HMM PF01189; Nol1/Nop2/Sun family protein 84916..86010 Chlamydophila pneumoniae AR39 963733 NP_444626.1 CDS CP0074 NC_002179.2 86118 86297 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(86118..86297) Chlamydophila pneumoniae AR39 963734 NP_444627.1 CDS CP0075 NC_002179.2 86533 87843 R similar to GB:L09228 SP:P35150 GB:M84227 PID:410134 GB:AL009126; identified by sequence similarity; D-alanyl-D-alanine carboxypeptidase complement(86533..87843) Chlamydophila pneumoniae AR39 963741 NP_444628.1 CDS CP0076 NC_002179.2 87954 88382 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 87954..88382 Chlamydophila pneumoniae AR39 963742 NP_444629.1 CDS CP0077 NC_002179.2 88385 88837 R similar to GB:M34995 SP:P17904 PID:143459 PID:1881282 PID:1881282; identified by sequence similarity; rsbW protein complement(88385..88837) Chlamydophila pneumoniae AR39 963747 NP_444630.1 CDS CP0078 NC_002179.2 88806 89405 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(88806..89405) Chlamydophila pneumoniae AR39 963750 NP_444631.1 CDS CP0079 NC_002179.2 89419 90375 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(89419..90375) Chlamydophila pneumoniae AR39 963107 NP_444632.1 CDS CP0080 NC_002179.2 90527 91411 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 90527..91411 Chlamydophila pneumoniae AR39 963760 NP_444633.1 CDS dnaE NC_002179.2 91475 95197 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(91475..95197) Chlamydophila pneumoniae AR39 963766 NP_444634.1 CDS CP0082 NC_002179.2 95217 96584 R similar to GB:M89480 SP:P27669 GB:X52093 PID:154410; identified by sequence similarity; GlpT/PgpT/UhpT family protein complement(95217..96584) Chlamydophila pneumoniae AR39 963768 NP_444635.1 CDS CP0083 NC_002179.2 96828 97031 D hypothetical protein; identified by Glimmer2; hypothetical protein 96828..97031 Chlamydophila pneumoniae AR39 963769 NP_444636.1 CDS hisS NC_002179.2 97395 98687 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 97395..98687 Chlamydophila pneumoniae AR39 963773 NP_444637.1 CDS aspS NC_002179.2 98662 100416 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 98662..100416 Chlamydophila pneumoniae AR39 963774 NP_444638.1 CDS CP0086 NC_002179.2 100485 101261 D similar to SP:P26623 GB:X66126 GB:X66127 GB:X66128 PID:40700; identified by sequence similarity; peptidyl-prolyl cis-trans isomerase Mip 100485..101261 Chlamydophila pneumoniae AR39 963775 NP_444639.1 CDS CP0087 NC_002179.2 101258 101728 D spoU rRNA methylase family protein; identified by match to TIGR protein family HMM TIGR00185; spoU rRNA methylase family protein 101258..101728 Chlamydophila pneumoniae AR39 963776 NP_444640.1 CDS CP0088 NC_002179.2 101744 102052 R similar to GB:J03294 SP:P14949 GB:X79976 PID:142520 PID:1770044; identified by sequence similarity; thioredoxin complement(101744..102052) Chlamydophila pneumoniae AR39 963778 NP_444641.1 CDS CP0089 NC_002179.2 102417 103133 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 102417..103133 Chlamydophila pneumoniae AR39 963790 NP_444642.1 CDS CP0090 NC_002179.2 103112 103537 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 103112..103537 Chlamydophila pneumoniae AR39 963820 NP_444643.1 CDS CP0091 NC_002179.2 103534 103644 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(103534..103644) Chlamydophila pneumoniae AR39 963821 NP_444644.1 CDS CP0092 NC_002179.2 103738 104487 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 103738..104487 Chlamydophila pneumoniae AR39 963845 NP_444645.1 CDS CP0093 NC_002179.2 104618 105085 D similar to SP:Q64559 PID:1915948 PID:1944428 PID:2130523 PID:1752786; identified by sequence similarity; cytosolic acyl-CoA thioester hydrolase family protein 104618..105085 Chlamydophila pneumoniae AR39 963855 NP_444646.1 CDS lnt NC_002179.2 105095 106720 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 105095..106720 Chlamydophila pneumoniae AR39 962689 NP_444647.1 CDS lpxC NC_002179.2 106735 107598 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 106735..107598 Chlamydophila pneumoniae AR39 963026 NP_444648.1 CDS fabZ NC_002179.2 107610 108071 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 107610..108071 Chlamydophila pneumoniae AR39 963020 NP_444649.1 CDS CP0097 NC_002179.2 108084 108923 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 108084..108923 Chlamydophila pneumoniae AR39 963035 NP_444650.1 CDS fmt NC_002179.2 108913 109878 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 108913..109878 Chlamydophila pneumoniae AR39 962917 NP_444651.1 CDS CP0099 NC_002179.2 109982 110983 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 109982..110983 Chlamydophila pneumoniae AR39 962924 NP_444652.1 CDS rplC NC_002179.2 111272 111931 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 111272..111931 Chlamydophila pneumoniae AR39 963034 NP_444653.1 CDS rplD NC_002179.2 111964 112638 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 111964..112638 Chlamydophila pneumoniae AR39 963031 NP_444654.1 CDS rplW NC_002179.2 112655 112990 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 112655..112990 Chlamydophila pneumoniae AR39 963840 NP_444655.1 CDS rplB NC_002179.2 113012 113866 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 113012..113866 Chlamydophila pneumoniae AR39 963032 NP_444656.1 CDS rpsS NC_002179.2 113872 114138 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 113872..114138 Chlamydophila pneumoniae AR39 963027 NP_444657.1 CDS rplV NC_002179.2 114157 114492 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 114157..114492 Chlamydophila pneumoniae AR39 963839 NP_444658.1 CDS rpsC NC_002179.2 114508 115179 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 114508..115179 Chlamydophila pneumoniae AR39 963025 NP_444659.1 CDS rplP NC_002179.2 115208 115624 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 115208..115624 Chlamydophila pneumoniae AR39 963068 NP_444660.1 CDS rpmC NC_002179.2 115627 115845 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 115627..115845 Chlamydophila pneumoniae AR39 963484 NP_444661.1 CDS rpsQ NC_002179.2 115838 116098 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 115838..116098 Chlamydophila pneumoniae AR39 963024 NP_444662.1 CDS rplN NC_002179.2 116121 116489 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 116121..116489 Chlamydophila pneumoniae AR39 963030 NP_444663.1 CDS rplX NC_002179.2 116503 116838 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 116503..116838 Chlamydophila pneumoniae AR39 963029 NP_444664.1 CDS rplE NC_002179.2 116840 117382 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 116840..117382 Chlamydophila pneumoniae AR39 963023 NP_444665.1 CDS rpsH NC_002179.2 117400 117801 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 117400..117801 Chlamydophila pneumoniae AR39 963041 NP_444666.1 CDS rplF NC_002179.2 117828 118379 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 117828..118379 Chlamydophila pneumoniae AR39 963015 NP_444667.1 CDS rplR NC_002179.2 118390 118761 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 118390..118761 Chlamydophila pneumoniae AR39 963022 NP_444668.1 CDS rpsE NC_002179.2 118779 119276 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 118779..119276 Chlamydophila pneumoniae AR39 963019 NP_444669.1 CDS rplO NC_002179.2 119269 119703 D late assembly protein; 50S ribosomal protein L15 119269..119703 Chlamydophila pneumoniae AR39 963018 NP_444670.2 CDS secY NC_002179.2 119728 121101 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 119728..121101 Chlamydophila pneumoniae AR39 963014 NP_444671.1 CDS rpsM NC_002179.2 121157 121525 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 121157..121525 Chlamydophila pneumoniae AR39 963013 NP_444672.1 CDS CP0120 NC_002179.2 121547 121948 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 121547..121948 Chlamydophila pneumoniae AR39 962816 NP_444673.1 CDS CP0121 NC_002179.2 121918 123093 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 121918..123093 Chlamydophila pneumoniae AR39 963000 NP_444674.1 CDS rplQ NC_002179.2 123100 123528 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 123100..123528 Chlamydophila pneumoniae AR39 963010 NP_444675.1 CDS CP0123 NC_002179.2 123570 124577 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 123570..124577 Chlamydophila pneumoniae AR39 963037 NP_444676.1 CDS CP0124 NC_002179.2 124592 125425 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 124592..125425 Chlamydophila pneumoniae AR39 963016 NP_444677.1 CDS CP0125 NC_002179.2 125833 126795 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 125833..126795 Chlamydophila pneumoniae AR39 963008 NP_444678.1 CDS ruvC NC_002179.2 126938 127444 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 126938..127444 Chlamydophila pneumoniae AR39 963017 NP_444679.1 CDS ruvA NC_002179.2 127446 128069 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 127446..128069 Chlamydophila pneumoniae AR39 962994 NP_444680.1 CDS ndk NC_002179.2 128141 128575 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 128141..128575 Chlamydophila pneumoniae AR39 963007 NP_444681.1 CDS CP0129 NC_002179.2 128572 129279 R similar to GB:U14003 SP:P32099 GB:X03046 PID:432634 PID:504496; identified by sequence similarity; lipoate-protein ligase-related protein complement(128572..129279) Chlamydophila pneumoniae AR39 962989 NP_444682.1 CDS CP0130 NC_002179.2 129266 131101 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(129266..131101) Chlamydophila pneumoniae AR39 962995 NP_444683.1 CDS CP0131 NC_002179.2 131445 132851 R unwinds double stranded DNA; replicative DNA helicase complement(131445..132851) Chlamydophila pneumoniae AR39 963005 NP_444684.1 CDS CP0132 NC_002179.2 133448 133954 D similar to GB:M12299 SP:P06978 PID:473749 GB:U00096 PID:1736571; identified by sequence similarity; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase protein 133448..133954 Chlamydophila pneumoniae AR39 963012 NP_444685.1 CDS CP0133 NC_002179.2 134183 135805 D similar to GB:M28816 SP:P19568 PID:152470 GB:AJ235269; identified by sequence similarity; ADP, ATP carrier protein 134183..135805 Chlamydophila pneumoniae AR39 963006 NP_444686.1 CDS CP0134 NC_002179.2 135929 136930 D similar to GP:147868; identified by sequence similarity; protease IV 135929..136930 Chlamydophila pneumoniae AR39 963003 NP_444687.1 CDS CP0135 NC_002179.2 136954 139566 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 136954..139566 Chlamydophila pneumoniae AR39 962990 NP_444688.1 CDS coaE NC_002179.2 139560 140168 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 139560..140168 Chlamydophila pneumoniae AR39 963837 NP_444689.1 CDS rho NC_002179.2 140165 141559 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 140165..141559 Chlamydophila pneumoniae AR39 963002 NP_444690.1 CDS CP0138 NC_002179.2 141596 141880 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(141596..141880) Chlamydophila pneumoniae AR39 962983 NP_444691.1 CDS CP0139 NC_002179.2 141940 142572 D catalyzes the formation of orotidine monophosphate from 5-phosphoribosyl-1-pyrophosphate and orotate; orotate phosphoribosyltransferase 141940..142572 Chlamydophila pneumoniae AR39 962980 NP_444692.1 CDS CP0140 NC_002179.2 142690 144015 D similar to SP:P30521 PID:580714; identified by sequence similarity; glucose-1-phosphate adenylyltransferase 142690..144015 Chlamydophila pneumoniae AR39 962998 NP_444693.1 CDS CP0141 NC_002179.2 144141 144881 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 144141..144881 Chlamydophila pneumoniae AR39 963850 NP_444694.1 CDS CP0142 NC_002179.2 144878 145438 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 144878..145438 Chlamydophila pneumoniae AR39 963851 NP_444695.1 CDS CP0143 NC_002179.2 145640 146392 D similar to SP:P10344 PID:41569 GB:U00096 PID:1651365 PID:1651371; identified by sequence similarity; amino acid ABC transporter substrate-binding protein 145640..146392 Chlamydophila pneumoniae AR39 962996 NP_444696.1 CDS hemH NC_002179.2 146397 147380 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(146397..147380) Chlamydophila pneumoniae AR39 962792 NP_444697.1 CDS CP0145 NC_002179.2 147480 148484 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 147480..148484 Chlamydophila pneumoniae AR39 962848 NP_444698.1 CDS CP0146 NC_002179.2 148532 148852 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 148532..148852 Chlamydophila pneumoniae AR39 962988 NP_444699.1 CDS CP0147 NC_002179.2 149015 149212 D hypothetical protein; identified by Glimmer2; hypothetical protein 149015..149212 Chlamydophila pneumoniae AR39 963089 NP_444700.1 CDS CP0148 NC_002179.2 149438 149761 D hypothetical protein; identified by Glimmer2; hypothetical protein 149438..149761 Chlamydophila pneumoniae AR39 963835 NP_444701.1 CDS CP0149 NC_002179.2 149783 151906 D similar to SP:P42061 PID:677945 GB:AL009126; identified by sequence similarity; peptide ABC transporter substrate-binding protein 149783..151906 Chlamydophila pneumoniae AR39 963836 NP_444702.1 CDS CP0150 NC_002179.2 151888 153369 D similar to SP:P26903 PID:580850 GB:AL009126; identified by sequence similarity; peptide ABC transporter permease 151888..153369 Chlamydophila pneumoniae AR39 962987 NP_444703.1 CDS CP0151 NC_002179.2 153370 155109 D similar to SP:P08006 GB:X05491 GB:X52093 PID:47804; identified by sequence similarity; peptide ABC transporter permease 153370..155109 Chlamydophila pneumoniae AR39 962757 NP_444704.1 CDS CP0152 NC_002179.2 155125 155646 R DNA methyltransferase; identified by match to PFAM protein family HMM PF01035; DNA methyltransferase complement(155125..155646) Chlamydophila pneumoniae AR39 962992 NP_444705.1 CDS CP0153 NC_002179.2 155656 156627 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(155656..156627) Chlamydophila pneumoniae AR39 962986 NP_444706.1 CDS pheT NC_002179.2 156624 159002 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(156624..159002) Chlamydophila pneumoniae AR39 962970 NP_444707.1 CDS CP0155 NC_002179.2 159109 160197 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 159109..160197 Chlamydophila pneumoniae AR39 963108 NP_444708.1 CDS CP0156 NC_002179.2 160121 160441 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(160121..160441) Chlamydophila pneumoniae AR39 962967 NP_444709.1 CDS CP0157 NC_002179.2 160562 161212 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(160562..161212) Chlamydophila pneumoniae AR39 963112 NP_444710.1 CDS CP0158 NC_002179.2 161473 162072 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 161473..162072 Chlamydophila pneumoniae AR39 962958 NP_444711.1 CDS recO NC_002179.2 162187 162945 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(162187..162945) Chlamydophila pneumoniae AR39 962985 NP_444712.1 CDS CP0160 NC_002179.2 162956 163501 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(162956..163501) Chlamydophila pneumoniae AR39 962991 NP_444713.1 CDS CP0161 NC_002179.2 163458 164144 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(163458..164144) Chlamydophila pneumoniae AR39 962979 NP_444714.1 CDS CP0162 NC_002179.2 164399 165583 R sigma-54 dependent response regulator; identified by match to PFAM protein family HMM PF00158; sigma-54 dependent response regulator complement(164399..165583) Chlamydophila pneumoniae AR39 962978 NP_444715.1 CDS CP0163 NC_002179.2 165768 167723 D hypothetical protein; identified by Glimmer2; hypothetical protein 165768..167723 Chlamydophila pneumoniae AR39 962982 NP_444716.1 CDS CP0164 NC_002179.2 167784 168908 R sensor histidine kinase; identified by match to PFAM protein family HMM PF00989; sensor histidine kinase complement(167784..168908) Chlamydophila pneumoniae AR39 962981 NP_444717.1 CDS CP0165 NC_002179.2 168865 169185 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(168865..169185) Chlamydophila pneumoniae AR39 962977 NP_444718.1 CDS CP0166 NC_002179.2 169405 170082 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(169405..170082) Chlamydophila pneumoniae AR39 962969 NP_444719.1 CDS CP0167 NC_002179.2 170109 170843 D hydrolase, haloacid dehalogenase-like family; identified by match to PFAM protein family HMM PF00702; HAD superfamily hydrolase 170109..170843 Chlamydophila pneumoniae AR39 963001 NP_444720.1 CDS truA NC_002179.2 170789 171592 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(170789..171592) Chlamydophila pneumoniae AR39 962976 NP_444721.1 CDS ispD NC_002179.2 171589 172224 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(171589..172224) Chlamydophila pneumoniae AR39 963833 NP_444722.1 CDS CP0170 NC_002179.2 172217 173179 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(172217..173179) Chlamydophila pneumoniae AR39 963834 NP_444723.1 CDS CP0171 NC_002179.2 173427 173690 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(173427..173690) Chlamydophila pneumoniae AR39 962975 NP_444724.1 CDS CP0172 NC_002179.2 173690 173845 D hypothetical protein; identified by Glimmer2; hypothetical protein 173690..173845 Chlamydophila pneumoniae AR39 963829 NP_444725.1 CDS CP0174 NC_002179.2 175091 175606 D acetyltransferase, GNAT family; identified by match to PFAM protein family HMM PF00583; acetyltransferase 175091..175606 Chlamydophila pneumoniae AR39 962971 NP_444726.1 CDS CP0175 NC_002179.2 175640 176194 D hypothetical protein; identified by Glimmer2; hypothetical protein 175640..176194 Chlamydophila pneumoniae AR39 963727 NP_444727.1 CDS CP0176 NC_002179.2 176181 176897 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 176181..176897 Chlamydophila pneumoniae AR39 963732 NP_444728.1 CDS CP0177 NC_002179.2 176966 179233 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(176966..179233) Chlamydophila pneumoniae AR39 962968 NP_444729.1 CDS CP0178 NC_002179.2 179463 180839 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 179463..180839 Chlamydophila pneumoniae AR39 963785 NP_444730.1 CDS argS NC_002179.2 180793 182478 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(180793..182478) Chlamydophila pneumoniae AR39 963786 NP_444731.1 CDS CP0180 NC_002179.2 182483 183121 R 1-acyl-sn-glycerol-3-phosphate acyltransferase, ; identified by match to PFAM protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(182483..183121) Chlamydophila pneumoniae AR39 963788 NP_444732.1 CDS cmk NC_002179.2 183118 183768 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(183118..183768) Chlamydophila pneumoniae AR39 962966 NP_444733.1 CDS CP0182 NC_002179.2 183765 184691 R similar to GB:M11330 SP:P06466 PID:1208947 PID:145476 GB:U00096; identified by sequence similarity; phosphatidate cytidylyltransferase complement(183765..184691) Chlamydophila pneumoniae AR39 962984 NP_444734.1 CDS CP0183 NC_002179.2 184692 185477 R catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate; UDP pyrophosphate synthase complement(184692..185477) Chlamydophila pneumoniae AR39 962965 NP_444735.1 CDS CP0184 NC_002179.2 185532 185681 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(185532..185681) Chlamydophila pneumoniae AR39 962964 NP_444736.1 CDS CP0185 NC_002179.2 185955 187055 D hypothetical protein; identified by Glimmer2; hypothetical protein 185955..187055 Chlamydophila pneumoniae AR39 962947 NP_444737.1 CDS CP0186 NC_002179.2 187235 191443 D part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; in these organisms there is an unknown N-terminal domain; preprotein translocase subunit SecD/SecF 187235..191443 Chlamydophila pneumoniae AR39 962973 NP_444738.1 CDS CP0187 NC_002179.2 191529 193295 D similar to GB:M54884 SP:P21893 PID:147550 PID:887842 GB:U00096; identified by sequence similarity; single-stranded-DNA-specific exonuclease RecJ 191529..193295 Chlamydophila pneumoniae AR39 962972 NP_444739.1 CDS CP0188 NC_002179.2 193549 194670 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 193549..194670 Chlamydophila pneumoniae AR39 962962 NP_444740.1 CDS CP0189 NC_002179.2 195181 195717 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 195181..195717 Chlamydophila pneumoniae AR39 963263 NP_444741.1 CDS gltX NC_002179.2 195973 197490 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 195973..197490 Chlamydophila pneumoniae AR39 962974 NP_444742.1 CDS CP0191 NC_002179.2 197655 197843 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(197655..197843) Chlamydophila pneumoniae AR39 962953 NP_444743.1 CDS CP0192 NC_002179.2 198101 198208 D hypothetical protein; identified by Glimmer2; hypothetical protein 198101..198208 Chlamydophila pneumoniae AR39 962960 NP_444744.1 CDS omcA NC_002179.2 198285 198557 D similar to PID:1783381; identified by sequence similarity; small CRP; small cysteine-rich protein; OmcA 198285..198557 Chlamydophila pneumoniae AR39 963736 NP_444745.1 CDS CP0194 NC_002179.2 198621 198737 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(198621..198737) Chlamydophila pneumoniae AR39 963737 NP_444746.1 CDS omcB NC_002179.2 198724 200394 D similar to SP:P23700 PID:550566 PID:1326243 PID:1326245 GB:AE001363; identified by sequence similarity; OmcB 198724..200394 Chlamydophila pneumoniae AR39 963735 NP_444747.1 CDS srp NC_002179.2 200673 201263 D similar to SP:P18587; identified by sequence similarity; hypothetical protein 200673..201263 Chlamydophila pneumoniae AR39 962959 NP_444748.1 CDS CP0197 NC_002179.2 201341 203287 R similar to GP:216618; identified by sequence similarity; tail-specific protease precursor complement(201341..203287) Chlamydophila pneumoniae AR39 962939 NP_444749.1 CDS CP0198 NC_002179.2 203441 203731 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(203441..203731) Chlamydophila pneumoniae AR39 962952 NP_444750.1 CDS CP0199 NC_002179.2 203838 204776 D hypothetical protein; identified by Glimmer2; hypothetical protein 203838..204776 Chlamydophila pneumoniae AR39 962955 NP_444751.1 CDS rpsL NC_002179.2 204998 205369 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 204998..205369 Chlamydophila pneumoniae AR39 962957 NP_444752.1 CDS CP0201 NC_002179.2 205417 205890 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 205417..205890 Chlamydophila pneumoniae AR39 962956 NP_444753.1 CDS CP0202 NC_002179.2 205924 208008 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 205924..208008 Chlamydophila pneumoniae AR39 962961 NP_444754.1 CDS rpsJ NC_002179.2 208016 208333 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 208016..208333 Chlamydophila pneumoniae AR39 962954 NP_444755.1 CDS CP0204 NC_002179.2 208354 209397 D oxidoreductase; identified by match to PFAM protein family HMM PF00667; oxidoreductase 208354..209397 Chlamydophila pneumoniae AR39 963823 NP_444756.1 CDS ispF NC_002179.2 209394 209924 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(209394..209924) Chlamydophila pneumoniae AR39 963831 NP_444757.1 CDS rplU NC_002179.2 210356 210676 D similar to GB:D13267 SP:P02422 PID:216636 PID:606124 GB:U00096; identified by sequence similarity; 50S ribosomal protein L21 210356..210676 Chlamydophila pneumoniae AR39 962946 NP_444758.1 CDS rpmA NC_002179.2 210701 210955 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 210701..210955 Chlamydophila pneumoniae AR39 963825 NP_444759.2 CDS obgE NC_002179.2 211056 212063 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 211056..212063 Chlamydophila pneumoniae AR39 963826 NP_444760.1 CDS CP0209 NC_002179.2 211979 212860 R similar to PID:1245464 SP:Q56955 PID:1245467; identified by sequence similarity; ABC transporter permease complement(211979..212860) Chlamydophila pneumoniae AR39 962943 NP_444761.1 CDS CP0210 NC_002179.2 212845 213582 R ABC transporter ATP-binding protein; identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein complement(212845..213582) Chlamydophila pneumoniae AR39 962948 NP_444762.1 CDS CP0211 NC_002179.2 213579 214415 R similar to GP:3758895; identified by sequence similarity; ABC transporter substrate-binding protein complement(213579..214415) Chlamydophila pneumoniae AR39 963830 NP_444763.1 CDS CP0212 NC_002179.2 214720 219918 R similar to GP:4376830; identified by sequence similarity; polymorphic membrane protein B/C family protein complement(214720..219918) Chlamydophila pneumoniae AR39 962942 NP_444764.1 CDS CP0213 NC_002179.2 220037 222880 R similar to GP:4376829; identified by sequence similarity; polymorphic membrane protein A family protein complement(220037..222880) Chlamydophila pneumoniae AR39 962785 NP_444765.1 CDS CP0214 NC_002179.2 223071 223373 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(223071..223373) Chlamydophila pneumoniae AR39 962945 NP_444766.1 CDS CP0215 NC_002179.2 223393 223752 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(223393..223752) Chlamydophila pneumoniae AR39 962941 NP_444767.1 CDS CP0216 NC_002179.2 223891 225240 R sodium/alanine symporter family protein; identified by match to PFAM protein family HMM PF01235; sodium/alanine symporter family protein complement(223891..225240) Chlamydophila pneumoniae AR39 962940 NP_444768.1 CDS lspA NC_002179.2 225286 225792 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(225286..225792) Chlamydophila pneumoniae AR39 962949 NP_444769.1 CDS CP0218 NC_002179.2 225798 226196 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(225798..226196) Chlamydophila pneumoniae AR39 962938 NP_444770.1 CDS nrdR NC_002179.2 226197 226655 R conserved hypothetical protein; identified by Glimmer2; transcriptional regulator NrdR complement(226197..226655) Chlamydophila pneumoniae AR39 962950 NP_444771.1 CDS CP0220 NC_002179.2 226911 227513 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 226911..227513 Chlamydophila pneumoniae AR39 963827 NP_444772.1 CDS CP0221 NC_002179.2 227516 228343 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 227516..228343 Chlamydophila pneumoniae AR39 962937 NP_444773.1 CDS CP0222 NC_002179.2 228331 229128 D spoU rRNA methylase family protein; identified by match to PFAM protein family HMM PF00588; spoU rRNA methylase family protein 228331..229128 Chlamydophila pneumoniae AR39 963824 NP_444774.1 CDS lpxK NC_002179.2 229326 230423 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 229326..230423 Chlamydophila pneumoniae AR39 963828 NP_444775.1 CDS CP0224 NC_002179.2 230423 231667 D sodium:dicarboxylate symporter family protein; identified by match to PFAM protein family HMM PF00375; sodium:dicarboxylate symporter family protein 230423..231667 Chlamydophila pneumoniae AR39 962936 NP_444776.1 CDS CP0225 NC_002179.2 231681 232862 D Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 231681..232862 Chlamydophila pneumoniae AR39 962933 NP_444777.1 CDS CP0226 NC_002179.2 232889 233878 D similar to SP:P17115 GB:X51361 PID:41632 PID:882600 GB:U00096; identified by sequence similarity; carbohydrate isomerase KpsF/GutQ family protein 232889..233878 Chlamydophila pneumoniae AR39 962944 NP_444778.1 CDS CP0227 NC_002179.2 234013 234117 D hypothetical protein; identified by Glimmer2; hypothetical protein 234013..234117 Chlamydophila pneumoniae AR39 962935 NP_444779.1 CDS CP0228 NC_002179.2 234299 235063 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(234299..235063) Chlamydophila pneumoniae AR39 963844 NP_444780.1 CDS CP0229 NC_002179.2 235403 236482 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(235403..236482) Chlamydophila pneumoniae AR39 963822 NP_444781.1 CDS CP0230 NC_002179.2 236530 236862 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(236530..236862) Chlamydophila pneumoniae AR39 962932 NP_444782.1 CDS hemD NC_002179.2 236927 237598 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(236927..237598) Chlamydophila pneumoniae AR39 963817 NP_444783.1 CDS glyA NC_002179.2 237854 239347 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 237854..239347 Chlamydophila pneumoniae AR39 963819 NP_444784.1 CDS CP0233 NC_002179.2 239367 239942 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 239367..239942 Chlamydophila pneumoniae AR39 962928 NP_444785.1 CDS dapF NC_002179.2 239911 240684 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 239911..240684 Chlamydophila pneumoniae AR39 963818 NP_444786.1 CDS CP0235 NC_002179.2 240782 241756 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 240782..241756 Chlamydophila pneumoniae AR39 962926 NP_444787.1 CDS CP0236 NC_002179.2 241954 242793 D hypothetical protein; identified by Glimmer2; hypothetical protein 241954..242793 Chlamydophila pneumoniae AR39 962927 NP_444788.1 CDS CP0237 NC_002179.2 242771 244333 D hypothetical protein; identified by Glimmer2; hypothetical protein 242771..244333 Chlamydophila pneumoniae AR39 962923 NP_444789.1 CDS ubiE NC_002179.2 244401 245114 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(244401..245114) Chlamydophila pneumoniae AR39 963816 NP_444790.1 CDS CP0239 NC_002179.2 245062 245856 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(245062..245856) Chlamydophila pneumoniae AR39 962925 NP_444791.1 CDS CP0240 NC_002179.2 245829 246938 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(245829..246938) Chlamydophila pneumoniae AR39 962918 NP_444792.1 CDS CP0241 NC_002179.2 246910 247143 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(246910..247143) Chlamydophila pneumoniae AR39 963815 NP_444793.1 CDS CP0242 NC_002179.2 247170 249032 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(247170..249032) Chlamydophila pneumoniae AR39 962919 NP_444794.1 CDS CP0243 NC_002179.2 249094 249444 R anti-anti-sigma factor; identified by match to PFAM protein family HMM PF01740; anti-anti-sigma factor complement(249094..249444) Chlamydophila pneumoniae AR39 962920 NP_444795.1 CDS CP0244 NC_002179.2 249609 250772 R similar to GB:X73141 PID:511148; identified by sequence similarity; hemolysin complement(249609..250772) Chlamydophila pneumoniae AR39 962922 NP_444796.1 CDS CP0245 NC_002179.2 250774 251250 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(250774..251250) Chlamydophila pneumoniae AR39 962916 NP_444797.1 CDS CP0246 NC_002179.2 251282 251443 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(251282..251443) Chlamydophila pneumoniae AR39 962951 NP_444798.1 CDS CP0247 NC_002179.2 251742 252524 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(251742..252524) Chlamydophila pneumoniae AR39 962930 NP_444799.1 CDS CP0248 NC_002179.2 252476 253066 R similar to SP:Q39147; identified by sequence similarity; DNA-3-methyladenine glycosylase complement(252476..253066) Chlamydophila pneumoniae AR39 962914 NP_444800.1 CDS CP0249 NC_002179.2 253068 255098 R exoribonuclease, VacB/Rnb family; identified by match to PFAM protein family HMM PF00773; VacB/Rnb family exoribonuclease complement(253068..255098) Chlamydophila pneumoniae AR39 962886 NP_444801.1 CDS CP0250 NC_002179.2 255287 255391 D hypothetical protein; identified by Glimmer2; hypothetical protein 255287..255391 Chlamydophila pneumoniae AR39 962905 NP_444802.1 CDS dnaK NC_002179.2 255369 257351 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(255369..257351) Chlamydophila pneumoniae AR39 962913 NP_444803.1 CDS CP0252 NC_002179.2 257381 257935 R similar to GB:M84964 SP:P15874 GB:X51477 PID:143058 PID:39928; identified by sequence similarity; heat shock protein GrpE complement(257381..257935) Chlamydophila pneumoniae AR39 962931 NP_444804.1 CDS hrcA NC_002179.2 257932 259155 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(257932..259155) Chlamydophila pneumoniae AR39 962915 NP_444805.1 CDS CP0254 NC_002179.2 259220 260926 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(259220..260926) Chlamydophila pneumoniae AR39 962929 NP_444806.1 CDS CP0255 NC_002179.2 261226 262383 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 261226..262383 Chlamydophila pneumoniae AR39 962912 NP_444807.1 CDS CP0256 NC_002179.2 262551 263504 D hypothetical protein; identified by Glimmer2; hypothetical protein 262551..263504 Chlamydophila pneumoniae AR39 963033 NP_444808.1 CDS CP0257 NC_002179.2 263497 263769 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 263497..263769 Chlamydophila pneumoniae AR39 963036 NP_444809.1 CDS CP0258 NC_002179.2 263771 264793 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(263771..264793) Chlamydophila pneumoniae AR39 962911 NP_444810.1 CDS CP0259 NC_002179.2 264790 265983 R catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase complement(264790..265983) Chlamydophila pneumoniae AR39 962904 NP_444811.1 CDS CP0260 NC_002179.2 266222 266443 D hypothetical protein; identified by Glimmer2; hypothetical protein 266222..266443 Chlamydophila pneumoniae AR39 963814 NP_444812.1 CDS CP0261 NC_002179.2 266582 266734 D hypothetical protein; identified by Glimmer2; hypothetical protein 266582..266734 Chlamydophila pneumoniae AR39 962907 NP_444813.1 CDS CP0262 NC_002179.2 266779 266934 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(266779..266934) Chlamydophila pneumoniae AR39 962910 NP_444814.1 CDS CP0263 NC_002179.2 267021 268253 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 267021..268253 Chlamydophila pneumoniae AR39 962896 NP_444815.1 CDS CP0264 NC_002179.2 268250 270307 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(268250..270307) Chlamydophila pneumoniae AR39 962906 NP_444816.1 CDS CP0265 NC_002179.2 270591 271493 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 270591..271493 Chlamydophila pneumoniae AR39 962908 NP_444817.1 CDS CP0266 NC_002179.2 271445 271822 D HIT family protein; identified by match to PFAM protein family HMM PF01230; HIT family protein 271445..271822 Chlamydophila pneumoniae AR39 963248 NP_444818.1 CDS CP0267 NC_002179.2 271846 273477 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 271846..273477 Chlamydophila pneumoniae AR39 962902 NP_444819.1 CDS CP0268 NC_002179.2 273850 275184 D sodium:solute symporter family protein; identified by match to PFAM protein family HMM PF00474; sodium:solute symporter family protein 273850..275184 Chlamydophila pneumoniae AR39 963813 NP_444820.1 CDS CP0269 NC_002179.2 275354 275548 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(275354..275548) Chlamydophila pneumoniae AR39 963793 NP_444821.1 CDS CP0270 NC_002179.2 275759 276616 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase complement(275759..276616) Chlamydophila pneumoniae AR39 962900 NP_444822.1 CDS CP0271 NC_002179.2 276619 279720 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(276619..279720) Chlamydophila pneumoniae AR39 962903 NP_444823.1 CDS CP0272 NC_002179.2 279849 280628 D similar to SP:P30860 GB:X67753 GB:X86160 PID:40934 PID:769794; identified by sequence similarity; amino acid ABC transporter substrate-binding protein 279849..280628 Chlamydophila pneumoniae AR39 962901 NP_444824.1 CDS CP0274 NC_002179.2 282284 282940 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 282284..282940 Chlamydophila pneumoniae AR39 962898 NP_444825.1 CDS CP0275 NC_002179.2 283162 283974 D metal-dependent hydrolase, ; identified by match to PFAM protein family HMM PF00753; metal-dependent hydrolase 283162..283974 Chlamydophila pneumoniae AR39 963756 NP_444826.1 CDS CP0276 NC_002179.2 283962 285380 D similar to GB:AE001273; identified by sequence similarity; GTP-binding protein HflX 283962..285380 Chlamydophila pneumoniae AR39 963780 NP_444827.1 CDS CP0277 NC_002179.2 285481 286746 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 285481..286746 Chlamydophila pneumoniae AR39 963796 NP_444828.1 CDS CP0278 NC_002179.2 286743 287732 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 286743..287732 Chlamydophila pneumoniae AR39 962897 NP_444829.1 CDS CP0279 NC_002179.2 287743 289905 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 287743..289905 Chlamydophila pneumoniae AR39 963361 NP_444830.1 CDS CP0280 NC_002179.2 290014 291783 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 290014..291783 Chlamydophila pneumoniae AR39 963467 NP_444831.1 CDS CP0281 NC_002179.2 291994 293520 D hypothetical protein; identified by Glimmer2; hypothetical protein 291994..293520 Chlamydophila pneumoniae AR39 962895 NP_444832.1 CDS CP0282 NC_002179.2 293682 296009 D hypothetical protein; identified by Glimmer2; hypothetical protein 293682..296009 Chlamydophila pneumoniae AR39 963342 NP_444833.1 CDS CP0283 NC_002179.2 296183 299023 R similar to GP:4376753; identified by sequence similarity; polymorphic membrane protein E/F family protein complement(296183..299023) Chlamydophila pneumoniae AR39 963261 NP_444834.1 CDS CP0285 NC_002179.2 302150 305008 R similar to GP:4376752; identified by sequence similarity; polymorphic membrane protein E/F family protein complement(302150..305008) Chlamydophila pneumoniae AR39 962888 NP_444835.1 CDS CP0286 NC_002179.2 305047 307863 R similar to GP:4376751; identified by sequence similarity; polymorphic membrane protein E/F family protein complement(305047..307863) Chlamydophila pneumoniae AR39 962894 NP_444836.1 CDS CP0287 NC_002179.2 308375 308719 D hypothetical protein; identified by Glimmer2; hypothetical protein 308375..308719 Chlamydophila pneumoniae AR39 962892 NP_444837.1 CDS CP0288 NC_002179.2 308745 309224 D hypothetical protein; identified by Glimmer2; hypothetical protein 308745..309224 Chlamydophila pneumoniae AR39 963811 NP_444838.1 CDS CP0289 NC_002179.2 309230 310399 D hypothetical protein; identified by Glimmer2; hypothetical protein 309230..310399 Chlamydophila pneumoniae AR39 962893 NP_444839.1 CDS CP0290 NC_002179.2 310535 312553 D hypothetical protein; identified by Glimmer2; hypothetical protein 310535..312553 Chlamydophila pneumoniae AR39 963812 NP_444840.1 CDS CP0291 NC_002179.2 312949 313746 D hypothetical protein; identified by Glimmer2; hypothetical protein 312949..313746 Chlamydophila pneumoniae AR39 963701 NP_444841.1 CDS CP0292 NC_002179.2 313747 314598 D hypothetical protein; identified by Glimmer2; hypothetical protein 313747..314598 Chlamydophila pneumoniae AR39 962891 NP_444842.1 CDS CP0293 NC_002179.2 314582 314971 D hypothetical protein; identified by Glimmer2; hypothetical protein 314582..314971 Chlamydophila pneumoniae AR39 962909 NP_444843.1 CDS CP0294 NC_002179.2 315267 317354 D hypothetical protein; identified by Glimmer2; hypothetical protein 315267..317354 Chlamydophila pneumoniae AR39 962899 NP_444844.1 CDS CP0295 NC_002179.2 317722 319611 D hypothetical protein; identified by Glimmer2; hypothetical protein 317722..319611 Chlamydophila pneumoniae AR39 962890 NP_444845.1 CDS CP0296 NC_002179.2 319632 319754 D hypothetical protein; identified by Glimmer2; hypothetical protein 319632..319754 Chlamydophila pneumoniae AR39 963807 NP_444846.1 CDS CP0297 NC_002179.2 320055 322133 D hypothetical protein; identified by Glimmer2; hypothetical protein 320055..322133 Chlamydophila pneumoniae AR39 963810 NP_444847.1 CDS CP0298 NC_002179.2 322470 325406 R similar to GP:4376737; identified by sequence similarity; polymorphic membrane protein H family protein complement(322470..325406) Chlamydophila pneumoniae AR39 962887 NP_444848.1 CDS CP0299 NC_002179.2 325433 328420 R similar to GP:4376736; identified by sequence similarity; polymorphic membrane protein G family protein complement(325433..328420) Chlamydophila pneumoniae AR39 963317 NP_444849.1 CDS CP0300 NC_002179.2 328540 328635 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(328540..328635) Chlamydophila pneumoniae AR39 963312 NP_444850.1 CDS CP0301 NC_002179.2 328725 330269 R similar to GP:4376735; identified by sequence similarity; polymorphic membrane protein G family protein complement(328725..330269) Chlamydophila pneumoniae AR39 962885 NP_444851.1 CDS CP0302 NC_002179.2 330527 333376 R similar to GP:4376733; identified by sequence similarity; polymorphic membrane protein G family protein complement(330527..333376) Chlamydophila pneumoniae AR39 963806 NP_444852.1 CDS CP0303 NC_002179.2 333476 336262 D similar to GP:4376729; identified by sequence similarity; polymorphic membrane protein G family protein 333476..336262 Chlamydophila pneumoniae AR39 963809 NP_444853.1 CDS CP0304 NC_002179.2 336620 336742 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(336620..336742) Chlamydophila pneumoniae AR39 962883 NP_444854.1 CDS CP0305 NC_002179.2 336779 337894 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 336779..337894 Chlamydophila pneumoniae AR39 962880 NP_444855.1 CDS CP0306 NC_002179.2 338235 341021 R similar to GP:4376731; identified by sequence similarity; polymorphic membrane protein G family protein complement(338235..341021) Chlamydophila pneumoniae AR39 963808 NP_444856.1 CDS CP0307 NC_002179.2 341171 343963 R similar to GP:4376729; identified by sequence similarity; polymorphic membrane protein G family protein complement(341171..343963) Chlamydophila pneumoniae AR39 962882 NP_444857.1 CDS CP0308 NC_002179.2 344007 346817 R similar to GP:4376728; identified by sequence similarity; polymorphic membrane protein G family protein complement(344007..346817) Chlamydophila pneumoniae AR39 963805 NP_444858.1 CDS CP0309 NC_002179.2 347079 350909 R similar to GP:4376727; identified by sequence similarity; polymorphic membrane protein G family protein complement(347079..350909) Chlamydophila pneumoniae AR39 963804 NP_444859.1 CDS CP0310 NC_002179.2 351214 352467 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(351214..352467) Chlamydophila pneumoniae AR39 962881 NP_444860.1 CDS CP0311 NC_002179.2 352665 353183 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(352665..353183) Chlamydophila pneumoniae AR39 962879 NP_444861.1 CDS CP0312 NC_002179.2 353355 354305 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(353355..354305) Chlamydophila pneumoniae AR39 963102 NP_444862.1 CDS CP0313 NC_002179.2 354453 355091 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(354453..355091) Chlamydophila pneumoniae AR39 963803 NP_444863.1 CDS CP0314 NC_002179.2 355116 355643 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(355116..355643) Chlamydophila pneumoniae AR39 962878 NP_444864.1 CDS mnmA NC_002179.2 355780 356865 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 355780..356865 Chlamydophila pneumoniae AR39 963260 NP_444865.1 CDS CP0316 NC_002179.2 356843 359380 R similar to SP:P31541; identified by sequence similarity; ATP-dependent Clp protease ATP-binding protein complement(356843..359380) Chlamydophila pneumoniae AR39 962889 NP_444866.1 CDS CP0317 NC_002179.2 359578 360297 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 359578..360297 Chlamydophila pneumoniae AR39 962884 NP_444867.1 CDS CP0318 NC_002179.2 360294 361724 D phospholipase D family protein; identified by match to PFAM protein family HMM PF00614; phospholipase D family protein 360294..361724 Chlamydophila pneumoniae AR39 962877 NP_444868.1 CDS CP0319 NC_002179.2 361734 363923 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 361734..363923 Chlamydophila pneumoniae AR39 963800 NP_444869.1 CDS CP0320 NC_002179.2 363923 364270 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 363923..364270 Chlamydophila pneumoniae AR39 963802 NP_444870.1 CDS CP0321 NC_002179.2 364380 364685 D hypothetical protein; identified by Glimmer2; hypothetical protein 364380..364685 Chlamydophila pneumoniae AR39 962876 NP_444871.1 CDS CP0322 NC_002179.2 364713 365048 D hypothetical protein; identified by Glimmer2; hypothetical protein 364713..365048 Chlamydophila pneumoniae AR39 962695 NP_444872.1 CDS CP0323 NC_002179.2 365100 365870 R similar to PID:893416 PID:893415; identified by sequence similarity; Na(+)-translocating NADH-quinone reductase subunit E complement(365100..365870) Chlamydophila pneumoniae AR39 962875 NP_444873.1 CDS CP0324 NC_002179.2 365874 366515 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(365874..366515) Chlamydophila pneumoniae AR39 962869 NP_444874.1 CDS CP0325 NC_002179.2 366512 367474 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(366512..367474) Chlamydophila pneumoniae AR39 962871 NP_444875.1 CDS CP0326 NC_002179.2 367478 368989 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(367478..368989) Chlamydophila pneumoniae AR39 962874 NP_444876.1 CDS CP0327 NC_002179.2 369085 369663 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 369085..369663 Chlamydophila pneumoniae AR39 963103 NP_444877.1 CDS CP0328 NC_002179.2 369629 370216 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(369629..370216) Chlamydophila pneumoniae AR39 963799 NP_444878.1 CDS dnaA NC_002179.2 370232 371635 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(370232..371635) Chlamydophila pneumoniae AR39 963801 NP_444879.1 CDS CP0330 NC_002179.2 371977 372405 R similar to GB:AE001273; identified by sequence similarity; hypothetical protein complement(371977..372405) Chlamydophila pneumoniae AR39 962873 NP_444880.1 CDS CP0331 NC_002179.2 372409 372954 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(372409..372954) Chlamydophila pneumoniae AR39 963797 NP_444881.1 CDS CP0332 NC_002179.2 373061 373180 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(373061..373180) Chlamydophila pneumoniae AR39 963798 NP_444882.1 CDS mraW NC_002179.2 373198 374091 D conserved hypothetical protein; identified by Glimmer2; S-adenosyl-methyltransferase MraW 373198..374091 Chlamydophila pneumoniae AR39 962872 NP_444883.1 CDS CP0334 NC_002179.2 374088 374375 D hypothetical protein; identified by Glimmer2; hypothetical protein 374088..374375 Chlamydophila pneumoniae AR39 962868 NP_444884.1 CDS CP0335 NC_002179.2 374362 376323 D similar to GB:X07469 SP:P08149 GB:M32091 GB:X07468 GB:X07470; identified by sequence similarity; penicillin-binding protein 374362..376323 Chlamydophila pneumoniae AR39 962866 NP_444885.1 CDS murE NC_002179.2 376796 378247 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 376796..378247 Chlamydophila pneumoniae AR39 962867 NP_444886.1 CDS CP0337 NC_002179.2 378162 378956 D similar to GB:D10388 SP:Q02114 GB:M81324 PID:142806 PID:143159; identified by sequence similarity; N-acetylmuramoyl-L-alanine amidase 378162..378956 Chlamydophila pneumoniae AR39 963795 NP_444887.1 CDS CP0338 NC_002179.2 379341 379643 D similar to GB:L35259 GB:M64046 PID:535713 SP:Q51473; identified by sequence similarity; integration host factor beta-subunit 379341..379643 Chlamydophila pneumoniae AR39 962863 NP_444888.1 CDS CP0339 NC_002179.2 379765 380979 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 379765..380979 Chlamydophila pneumoniae AR39 962865 NP_444889.1 CDS CP0340 NC_002179.2 381054 382028 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 381054..382028 Chlamydophila pneumoniae AR39 963229 NP_444890.1 CDS CP0341 NC_002179.2 381994 383973 D ABC transporter ATP-binding protein; identified by match to PFAM protein family HMM PF00664; ABC transporter ATP-binding protein 381994..383973 Chlamydophila pneumoniae AR39 963616 NP_444891.1 CDS CP0342 NC_002179.2 383948 384607 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(383948..384607) Chlamydophila pneumoniae AR39 962864 NP_444892.1 CDS CP0343 NC_002179.2 384585 385364 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(384585..385364) Chlamydophila pneumoniae AR39 963690 NP_444893.1 CDS CP0344 NC_002179.2 385361 386074 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(385361..386074) Chlamydophila pneumoniae AR39 963267 NP_444894.1 CDS CP0345 NC_002179.2 386067 386552 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(386067..386552) Chlamydophila pneumoniae AR39 962738 NP_444895.1 CDS CP0346 NC_002179.2 386613 387092 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(386613..387092) Chlamydophila pneumoniae AR39 962858 NP_444896.1 CDS CP0347 NC_002179.2 387279 387470 D hypothetical protein; identified by Glimmer2; hypothetical protein 387279..387470 Chlamydophila pneumoniae AR39 963682 NP_444897.1 CDS CP0348 NC_002179.2 387455 388342 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 387455..388342 Chlamydophila pneumoniae AR39 962861 NP_444898.1 CDS CP0349 NC_002179.2 388329 389228 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase complement(388329..389228) Chlamydophila pneumoniae AR39 963794 NP_444899.1 CDS CP0350 NC_002179.2 389458 390234 D hypothetical protein; identified by Glimmer2; hypothetical protein 389458..390234 Chlamydophila pneumoniae AR39 962857 NP_444900.1 CDS CP0351 NC_002179.2 390310 391329 D hypothetical protein; identified by Glimmer2; hypothetical protein 390310..391329 Chlamydophila pneumoniae AR39 963561 NP_444901.1 CDS CP0353 NC_002179.2 392203 393312 D similar to GB:M59471 SP:P17802 GB:X52391 PID:146864 PID:42073; identified by sequence similarity; A/G-specific adenine glycosylase 392203..393312 Chlamydophila pneumoniae AR39 963097 NP_444902.1 CDS CP0354 NC_002179.2 393313 393705 D similar to GB:J04039 SP:P33646 PID:416198 PID:882675 GB:U00096; identified by sequence similarity; mazG protein 393313..393705 Chlamydophila pneumoniae AR39 963563 NP_444903.1 CDS CP0355 NC_002179.2 393888 394661 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(393888..394661) Chlamydophila pneumoniae AR39 962856 NP_444904.1 CDS CP0356 NC_002179.2 394671 395318 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(394671..395318) Chlamydophila pneumoniae AR39 963574 NP_444905.1 CDS CP0357 NC_002179.2 395494 395664 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(395494..395664) Chlamydophila pneumoniae AR39 963193 NP_444906.1 CDS CP0358 NC_002179.2 396082 396819 D serine/threonine protein phosphatase, ; identified by match to PFAM protein family HMM PF00481; serine/threonine protein phosphatase 396082..396819 Chlamydophila pneumoniae AR39 962855 NP_444907.1 CDS CP0359 NC_002179.2 396844 397959 D similar to PID:762778 SP:Q43884; identified by sequence similarity; nifS protein 396844..397959 Chlamydophila pneumoniae AR39 962841 NP_444908.1 CDS CP0360 NC_002179.2 398019 399233 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(398019..399233) Chlamydophila pneumoniae AR39 963062 NP_444909.1 CDS CP0361 NC_002179.2 399226 400461 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(399226..400461) Chlamydophila pneumoniae AR39 963755 NP_444910.1 CDS CP0362 NC_002179.2 400471 400818 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(400471..400818) Chlamydophila pneumoniae AR39 962854 NP_444911.1 CDS dcd NC_002179.2 400811 401383 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(400811..401383) Chlamydophila pneumoniae AR39 963059 NP_444912.1 CDS CP0364 NC_002179.2 401505 401690 D hypothetical protein; identified by Glimmer2; hypothetical protein 401505..401690 Chlamydophila pneumoniae AR39 963752 NP_444913.1 CDS ruvB NC_002179.2 402053 403066 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 402053..403066 Chlamydophila pneumoniae AR39 962853 NP_444914.1 CDS CP0366 NC_002179.2 403063 403881 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 403063..403881 Chlamydophila pneumoniae AR39 963707 NP_444915.1 CDS CP0367 NC_002179.2 403874 405868 R similar to PID:1652733; identified by sequence similarity; glycosyl hydrolase family protein complement(403874..405868) Chlamydophila pneumoniae AR39 963058 NP_444916.1 CDS CP0368 NC_002179.2 406001 406501 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 406001..406501 Chlamydophila pneumoniae AR39 962852 NP_444917.1 CDS CP0369 NC_002179.2 406672 407154 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 406672..407154 Chlamydophila pneumoniae AR39 963696 NP_444918.1 CDS CP0370 NC_002179.2 407179 408678 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 407179..408678 Chlamydophila pneumoniae AR39 963846 NP_444919.1 CDS CP0371 NC_002179.2 408820 409338 D similar to GB:L12963 GB:L10193 PID:144509 PID:289839; identified by sequence similarity; Hc2 nucleoprotein 408820..409338 Chlamydophila pneumoniae AR39 963847 NP_444920.1 CDS CP0372 NC_002179.2 409504 410451 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 409504..410451 Chlamydophila pneumoniae AR39 962846 NP_444921.1 CDS CP0373 NC_002179.2 410448 411164 D tetrapyrrole methylase family protein; identified by match to PFAM protein family HMM PF00590; tetrapyrrole methylase family protein 410448..411164 Chlamydophila pneumoniae AR39 963530 NP_444922.1 CDS CP0374 NC_002179.2 411330 411560 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(411330..411560) Chlamydophila pneumoniae AR39 963526 NP_444923.1 CDS CP0375 NC_002179.2 411595 413163 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 411595..413163 Chlamydophila pneumoniae AR39 962845 NP_444924.1 CDS CP0376 NC_002179.2 413318 414502 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(413318..414502) Chlamydophila pneumoniae AR39 963614 NP_444925.1 CDS CP0377 NC_002179.2 414429 414875 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(414429..414875) Chlamydophila pneumoniae AR39 963617 NP_444926.1 CDS sucA NC_002179.2 415029 417755 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase subunit E1 415029..417755 Chlamydophila pneumoniae AR39 962842 NP_444927.1 CDS CP0379 NC_002179.2 417759 418853 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 417759..418853 Chlamydophila pneumoniae AR39 963848 NP_444928.1 CDS CP0380 NC_002179.2 418900 419343 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(418900..419343) Chlamydophila pneumoniae AR39 963004 NP_444929.1 CDS CP0381 NC_002179.2 419579 420076 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(419579..420076) Chlamydophila pneumoniae AR39 962840 NP_444930.1 CDS CP0382 NC_002179.2 420233 420979 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(420233..420979) Chlamydophila pneumoniae AR39 962843 NP_444931.1 CDS CP0383 NC_002179.2 420976 422817 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-clclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; these proteins appear to consist of duplicate domains as compared to Escherichia coli IspG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(420976..422817) Chlamydophila pneumoniae AR39 963849 NP_444932.1 CDS CP0384 NC_002179.2 423046 423153 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(423046..423153) Chlamydophila pneumoniae AR39 962839 NP_444933.1 CDS CP0385 NC_002179.2 423193 423510 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(423193..423510) Chlamydophila pneumoniae AR39 963124 NP_444934.1 CDS CP0386 NC_002179.2 423691 424050 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(423691..424050) Chlamydophila pneumoniae AR39 963619 NP_444935.1 CDS CP0387 NC_002179.2 424282 425397 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(424282..425397) Chlamydophila pneumoniae AR39 962838 NP_444936.1 CDS CP0388 NC_002179.2 425632 426846 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(425632..426846) Chlamydophila pneumoniae AR39 963239 NP_444937.1 CDS CP0389 NC_002179.2 426961 427059 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(426961..427059) Chlamydophila pneumoniae AR39 963761 NP_444938.1 CDS CP0389.1 NC_002179.2 427087 427407 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(427087..427407) Chlamydophila pneumoniae AR39 963697 NP_444939.1 CDS CP0390 NC_002179.2 427358 428095 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(427358..428095) Chlamydophila pneumoniae AR39 963090 NP_444940.1 CDS CP0391 NC_002179.2 428754 429221 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(428754..429221) Chlamydophila pneumoniae AR39 962837 NP_444941.1 CDS CP0392 NC_002179.2 429650 430684 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(429650..430684) Chlamydophila pneumoniae AR39 962832 NP_444942.1 CDS CP0393 NC_002179.2 430956 431231 R similar to GB:M59855 SP:P16022 GB:X51316 PID:151916 PID:435529; identified by sequence similarity; ferredoxin complement(430956..431231) Chlamydophila pneumoniae AR39 963746 NP_444943.1 CDS CP0394 NC_002179.2 431509 433257 D protein export protein, FHIPEP family; identified by match to PFAM protein family HMM PF00771; type III secretion system protein 431509..433257 Chlamydophila pneumoniae AR39 962835 NP_444944.1 CDS CP0395 NC_002179.2 433372 434145 D expressed in response to temperature increase; may be involved in expression of genes involved in the developmental cycle of Chlamydia; RNA polymerase sigma factor sigma-28 433372..434145 Chlamydophila pneumoniae AR39 962809 NP_444945.1 CDS CP0396 NC_002179.2 434094 434417 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(434094..434417) Chlamydophila pneumoniae AR39 962817 NP_444946.1 CDS CP0397 NC_002179.2 434580 435818 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 434580..435818 Chlamydophila pneumoniae AR39 962834 NP_444947.1 CDS CP0398 NC_002179.2 435839 437278 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 435839..437278 Chlamydophila pneumoniae AR39 963777 NP_444948.1 CDS CP0399 NC_002179.2 437377 439185 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(437377..439185) Chlamydophila pneumoniae AR39 963609 NP_444949.1 CDS CP0400 NC_002179.2 439446 439622 D hypothetical protein; identified by Glimmer2; hypothetical protein 439446..439622 Chlamydophila pneumoniae AR39 962830 NP_444950.1 CDS CP0401 NC_002179.2 439880 440731 D hypothetical protein; identified by Glimmer2; hypothetical protein 439880..440731 Chlamydophila pneumoniae AR39 963265 NP_444951.1 CDS CP0402 NC_002179.2 440738 441091 D hypothetical protein; identified by Glimmer2; hypothetical protein 440738..441091 Chlamydophila pneumoniae AR39 962694 NP_444952.1 CDS CP0403 NC_002179.2 441125 441241 D hypothetical protein; identified by Glimmer2; hypothetical protein 441125..441241 Chlamydophila pneumoniae AR39 963044 NP_444953.1 CDS CP0404 NC_002179.2 441302 442609 D hypothetical protein; identified by Glimmer2; hypothetical protein 441302..442609 Chlamydophila pneumoniae AR39 962828 NP_444954.1 CDS CP0405 NC_002179.2 442687 444078 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(442687..444078) Chlamydophila pneumoniae AR39 963684 NP_444955.1 CDS CP0406 NC_002179.2 444059 444304 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(444059..444304) Chlamydophila pneumoniae AR39 963705 NP_444956.1 CDS CP0407 NC_002179.2 444364 445644 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(444364..445644) Chlamydophila pneumoniae AR39 963706 NP_444957.1 CDS CP0408 NC_002179.2 445762 447309 R similar to GB:M28816 SP:P19568 PID:152470 GB:AJ235269; identified by sequence similarity; ADP, ATP carrier protein complement(445762..447309) Chlamydophila pneumoniae AR39 962823 NP_444958.1 CDS CP0409 NC_002179.2 447510 448025 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(447510..448025) Chlamydophila pneumoniae AR39 963134 NP_444959.1 CDS CP0410 NC_002179.2 448193 448396 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(448193..448396) Chlamydophila pneumoniae AR39 963133 NP_444960.1 CDS CP0411 NC_002179.2 448512 449495 D similar to PID:790546 PID:1777933 GB:AE000520; identified by sequence similarity; ABC transporter substrate-binding protein 448512..449495 Chlamydophila pneumoniae AR39 962822 NP_444961.1 CDS CP0412 NC_002179.2 449479 450258 D similar to PID:1777934 GB:AE000520; identified by sequence similarity; ABC transporter ATP-binding protein 449479..450258 Chlamydophila pneumoniae AR39 963313 NP_444962.1 CDS CP0413 NC_002179.2 450252 451607 D similar to PID:1777935 GB:AE000520; identified by sequence similarity; ABC transporter permease 450252..451607 Chlamydophila pneumoniae AR39 962762 NP_444963.1 CDS CP0414 NC_002179.2 451607 452581 D similar to PID:1777936 GB:AE000520; identified by sequence similarity; ABC transporter permease 451607..452581 Chlamydophila pneumoniae AR39 962821 NP_444964.1 CDS CP0415 NC_002179.2 452710 453849 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 452710..453849 Chlamydophila pneumoniae AR39 963687 NP_444965.1 CDS CP0416 NC_002179.2 453862 455727 D similar to GB:AE000520; identified by sequence similarity; zinc protease 453862..455727 Chlamydophila pneumoniae AR39 963009 NP_444966.1 CDS CP0417 NC_002179.2 455684 456661 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(455684..456661) Chlamydophila pneumoniae AR39 963350 NP_444967.1 CDS CP0419 NC_002179.2 457905 459005 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(457905..459005) Chlamydophila pneumoniae AR39 963384 NP_444968.1 CDS CP0420 NC_002179.2 459035 459184 D hypothetical protein; identified by Glimmer2; hypothetical protein 459035..459184 Chlamydophila pneumoniae AR39 962819 NP_444969.1 CDS smpB NC_002179.2 459214 459711 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 459214..459711 Chlamydophila pneumoniae AR39 962715 NP_444970.1 CDS CP0422 NC_002179.2 459689 460633 R similar to SP:P41780; identified by sequence similarity; thiamine biosynthesis lipoprotein complement(459689..460633) Chlamydophila pneumoniae AR39 963055 NP_444971.1 CDS CP0423 NC_002179.2 460606 461466 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(460606..461466) Chlamydophila pneumoniae AR39 962815 NP_444972.1 CDS CP0424 NC_002179.2 461457 461921 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(461457..461921) Chlamydophila pneumoniae AR39 963754 NP_444973.1 CDS CP0425 NC_002179.2 462193 462486 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 462193..462486 Chlamydophila pneumoniae AR39 963688 NP_444974.1 CDS CP0426 NC_002179.2 462846 464585 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 462846..464585 Chlamydophila pneumoniae AR39 963650 NP_444975.1 CDS CP0427 NC_002179.2 464608 465084 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 464608..465084 Chlamydophila pneumoniae AR39 962813 NP_444976.1 CDS CP0428 NC_002179.2 465134 466195 R phospholipase D family protein; identified by match to PFAM protein family HMM PF00614; phospholipase D family protein complement(465134..466195) Chlamydophila pneumoniae AR39 963536 NP_444977.1 CDS CP0429 NC_002179.2 466288 468042 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(466288..468042) Chlamydophila pneumoniae AR39 963535 NP_444978.1 CDS rpmB NC_002179.2 468069 468338 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(468069..468338) Chlamydophila pneumoniae AR39 962812 NP_444979.1 CDS CP0431 NC_002179.2 468555 470135 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(468555..470135) Chlamydophila pneumoniae AR39 963236 NP_444980.1 CDS CP0432 NC_002179.2 470132 470575 R similar to GP:2444074; identified by sequence similarity; type III secretion chaperone complement(470132..470575) Chlamydophila pneumoniae AR39 963224 NP_444981.1 CDS CP0433 NC_002179.2 470592 471791 R similar to PID:2358258; identified by sequence similarity; type III secreted protein SctW complement(470592..471791) Chlamydophila pneumoniae AR39 963054 NP_444982.1 CDS CP0434 NC_002179.2 471820 473952 R similar to GB:M77014 SP:P31487 PID:386718; identified by sequence similarity; type III secretion inner membrane protein SctV complement(471820..473952) Chlamydophila pneumoniae AR39 962810 NP_444983.1 CDS CP0435 NC_002179.2 473952 475034 R similar to GB:L25667 SP:P40300 PID:475126; identified by sequence similarity; type III secretion system protein complement(473952..475034) Chlamydophila pneumoniae AR39 963514 NP_444984.1 CDS CP0436 NC_002179.2 475425 476519 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 475425..476519 Chlamydophila pneumoniae AR39 963518 NP_444985.1 CDS CP0437 NC_002179.2 476497 477423 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(476497..477423) Chlamydophila pneumoniae AR39 962807 NP_444986.1 CDS truB NC_002179.2 477401 478108 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(477401..478108) Chlamydophila pneumoniae AR39 962805 NP_444987.1 CDS rbfA NC_002179.2 478154 478579 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(478154..478579) Chlamydophila pneumoniae AR39 963559 NP_444988.1 CDS infB NC_002179.2 478530 481202 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(478530..481202) Chlamydophila pneumoniae AR39 962806 NP_444989.1 CDS nusA NC_002179.2 481159 482463 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(481159..482463) Chlamydophila pneumoniae AR39 962691 NP_444990.1 CDS rpsA NC_002179.2 482564 484306 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(482564..484306) Chlamydophila pneumoniae AR39 962811 NP_444991.1 CDS CP0443 NC_002179.2 484750 484893 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(484750..484893) Chlamydophila pneumoniae AR39 962803 NP_444992.1 CDS CP0444 NC_002179.2 484998 485933 D similar to SP:P29509; identified by sequence similarity; thioredoxin reductase 484998..485933 Chlamydophila pneumoniae AR39 963713 NP_444993.1 CDS acpS NC_002179.2 485925 486293 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(485925..486293) Chlamydophila pneumoniae AR39 963712 NP_444994.1 CDS CP0446 NC_002179.2 486304 486759 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(486304..486759) Chlamydophila pneumoniae AR39 962802 NP_444995.1 CDS CP0447 NC_002179.2 486833 487711 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 486833..487711 Chlamydophila pneumoniae AR39 963310 NP_444996.1 CDS CP0448 NC_002179.2 487850 490237 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 487850..490237 Chlamydophila pneumoniae AR39 962862 NP_444997.1 CDS dnaA NC_002179.2 490309 491691 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 490309..491691 Chlamydophila pneumoniae AR39 963292 NP_444998.1 CDS CP0450 NC_002179.2 491684 492049 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(491684..492049) Chlamydophila pneumoniae AR39 962801 NP_444999.1 CDS CP0451 NC_002179.2 492297 494771 D similar to SP:P00489; identified by sequence similarity; glycogen phosphorylase 492297..494771 Chlamydophila pneumoniae AR39 963783 NP_445000.1 CDS CP0452 NC_002179.2 494849 496138 R Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(494849..496138) Chlamydophila pneumoniae AR39 963223 NP_445001.1 CDS CP0453 NC_002179.2 496143 497129 R similar to GP:3850999; identified by sequence similarity; pyruvate dehydrogenase subunit E1 beta complement(496143..497129) Chlamydophila pneumoniae AR39 962997 NP_445002.1 CDS CP0454 NC_002179.2 497122 498150 R similar to SP:Q06437 PID:2351254; identified by sequence similarity; pyruvate dehydrogenase subunit E1 alpha complement(497122..498150) Chlamydophila pneumoniae AR39 962993 NP_445003.1 CDS CP0455 NC_002179.2 498325 499365 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 498325..499365 Chlamydophila pneumoniae AR39 962795 NP_445004.1 CDS lpxD NC_002179.2 499414 500496 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(499414..500496) Chlamydophila pneumoniae AR39 962794 NP_445005.1 CDS CP0457 NC_002179.2 500518 501033 R similar to GB:AE001273; identified by sequence similarity; cationic outer membrane protein OmpH complement(500518..501033) Chlamydophila pneumoniae AR39 962728 NP_445006.1 CDS CP0458 NC_002179.2 501128 503506 R outer membrane protein, ; identified by match to PFAM protein family HMM PF01103; outer membrane protein complement(501128..503506) Chlamydophila pneumoniae AR39 962791 NP_445007.1 CDS recR NC_002179.2 503865 504467 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(503865..504467) Chlamydophila pneumoniae AR39 963749 NP_445008.1 CDS CP0460 NC_002179.2 504562 505569 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-ACP synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase III 504562..505569 Chlamydophila pneumoniae AR39 963748 NP_445009.1 CDS CP0461 NC_002179.2 505586 506512 D similar to GB:M87040 SP:P25715 GB:Z11565 PID:145887 PID:41364; identified by sequence similarity; ACP S-malonyltransferase 505586..506512 Chlamydophila pneumoniae AR39 963744 NP_445010.1 CDS fabG NC_002179.2 506518 507264 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(ACP) reductase 506518..507264 Chlamydophila pneumoniae AR39 963057 NP_445011.1 CDS acpP NC_002179.2 507420 507659 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 507420..507659 Chlamydophila pneumoniae AR39 963053 NP_445012.1 CDS CP0464 NC_002179.2 507778 508191 R similar to GB:AE001273; identified by sequence similarity; cyclic nucleotide-binding protein complement(507778..508191) Chlamydophila pneumoniae AR39 962788 NP_445013.1 CDS CP0465 NC_002179.2 508557 511334 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(508557..511334) Chlamydophila pneumoniae AR39 963101 NP_445014.1 CDS CP0466 NC_002179.2 511444 512055 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(511444..512055) Chlamydophila pneumoniae AR39 963316 NP_445015.1 CDS CP0467 NC_002179.2 512086 512616 R similar to PID:2388714; identified by sequence similarity; inclusion membrane protein B complement(512086..512616) Chlamydophila pneumoniae AR39 963743 NP_445016.1 CDS CP0468 NC_002179.2 512757 514241 R sodium-dependent transporter ; identified by match to PFAM protein family HMM PF00209; sodium-dependent transporter complement(512757..514241) Chlamydophila pneumoniae AR39 962787 NP_445017.1 CDS CP0469 NC_002179.2 514284 515471 R sodium:dicarboxylate symporter family protein; identified by match to PFAM protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(514284..515471) Chlamydophila pneumoniae AR39 963048 NP_445018.1 CDS CP0470 NC_002179.2 515567 516715 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 515567..516715 Chlamydophila pneumoniae AR39 962744 NP_445019.1 CDS CP0471 NC_002179.2 517062 519197 D hypothetical protein; identified by Glimmer2; hypothetical protein 517062..519197 Chlamydophila pneumoniae AR39 963246 NP_445020.1 CDS CP0472 NC_002179.2 519224 520636 D magnesium transporter; identified by match to TIGR protein family HMM TIGR00400; magnesium transporter 519224..520636 Chlamydophila pneumoniae AR39 962786 NP_445021.1 CDS CP0473 NC_002179.2 520688 522235 D hypothetical protein; identified by Glimmer2; hypothetical protein 520688..522235 Chlamydophila pneumoniae AR39 963050 NP_445022.1 CDS CP0474 NC_002179.2 522238 522735 D hypothetical protein; identified by Glimmer2; hypothetical protein 522238..522735 Chlamydophila pneumoniae AR39 962800 NP_445023.1 CDS CP0476 NC_002179.2 523751 525157 R similar to GB:U13204 SP:P39183 PID:532328 GB:U00096 PID:1742442; identified by sequence similarity; amino acid antiporter complement(523751..525157) Chlamydophila pneumoniae AR39 963039 NP_445024.1 CDS CP0477 NC_002179.2 525177 526226 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase complement(525177..526226) Chlamydophila pneumoniae AR39 963038 NP_445025.1 CDS CP0478 NC_002179.2 526711 527736 D ABC transporter ATP-binding protein; identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein 526711..527736 Chlamydophila pneumoniae AR39 962781 NP_445026.1 CDS CP0479 NC_002179.2 527746 528411 D ABC transporter permease; identified by match to PFAM protein family HMM PF00528; ABC transporter permease 527746..528411 Chlamydophila pneumoniae AR39 963767 NP_445027.1 CDS CP0480 NC_002179.2 528408 529226 D lipoprotein, ; identified by match to TIGR protein family HMM TIGR00363; lipoprotein 528408..529226 Chlamydophila pneumoniae AR39 963764 NP_445028.1 CDS CP0481 NC_002179.2 529373 529882 D hypothetical protein; identified by Glimmer2; hypothetical protein 529373..529882 Chlamydophila pneumoniae AR39 962780 NP_445029.1 CDS CP0482 NC_002179.2 529898 530047 D hypothetical protein; identified by Glimmer2; hypothetical protein 529898..530047 Chlamydophila pneumoniae AR39 963787 NP_445030.1 CDS CP0483 NC_002179.2 530146 530493 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 530146..530493 Chlamydophila pneumoniae AR39 963789 NP_445031.1 CDS gyrB NC_002179.2 530497 532914 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 530497..532914 Chlamydophila pneumoniae AR39 962778 NP_445032.1 CDS CP0485 NC_002179.2 532930 535434 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 532930..535434 Chlamydophila pneumoniae AR39 963490 NP_445033.1 CDS tmk NC_002179.2 535439 536059 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 535439..536059 Chlamydophila pneumoniae AR39 962851 NP_445034.1 CDS CP0487 NC_002179.2 536050 536946 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 536050..536946 Chlamydophila pneumoniae AR39 962769 NP_445035.1 CDS CP0488 NC_002179.2 536918 537649 R similar to GB:S70419 PID:546789; identified by sequence similarity; serine esterase complement(536918..537649) Chlamydophila pneumoniae AR39 963728 NP_445036.1 CDS CP0489 NC_002179.2 537958 538818 D similar to SP:P32579 PID:1322770 PID:4566 PID:971384; identified by sequence similarity; Sua5/YciO/YrdC family protein 537958..538818 Chlamydophila pneumoniae AR39 963739 NP_445037.1 CDS CP0490 NC_002179.2 538833 539810 D similar to PID:1088400; identified by sequence similarity; dipeptidase 538833..539810 Chlamydophila pneumoniae AR39 962768 NP_445038.1 CDS CP0491 NC_002179.2 539816 539956 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(539816..539956) Chlamydophila pneumoniae AR39 963762 NP_445039.1 CDS CP0492 NC_002179.2 539962 540348 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(539962..540348) Chlamydophila pneumoniae AR39 963040 NP_445040.1 CDS CP0493 NC_002179.2 540370 541161 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(540370..541161) Chlamydophila pneumoniae AR39 962736 NP_445041.1 CDS CP0494 NC_002179.2 541264 541362 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(541264..541362) Chlamydophila pneumoniae AR39 962760 NP_445042.1 CDS CP0495 NC_002179.2 541404 542099 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(541404..542099) Chlamydophila pneumoniae AR39 963740 NP_445043.1 CDS ubiA NC_002179.2 542663 543556 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 542663..543556 Chlamydophila pneumoniae AR39 963725 NP_445044.1 CDS CP0497 NC_002179.2 543553 544131 D phenylacrylic acid decarboxylase; identified by match to TIGR protein family HMM TIGR00421; aromatic acid decarboxylase 543553..544131 Chlamydophila pneumoniae AR39 962758 NP_445045.1 CDS CP0498 NC_002179.2 544144 545034 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(544144..545034) Chlamydophila pneumoniae AR39 963695 NP_445046.1 CDS surE NC_002179.2 545347 546192 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(545347..546192) Chlamydophila pneumoniae AR39 963782 NP_445047.1 CDS CP0500 NC_002179.2 546247 546981 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(546247..546981) Chlamydophila pneumoniae AR39 963683 NP_445048.1 CDS CP0501 NC_002179.2 547223 547738 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 547223..547738 Chlamydophila pneumoniae AR39 963397 NP_445049.1 CDS CP0502 NC_002179.2 547932 548039 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(547932..548039) Chlamydophila pneumoniae AR39 963703 NP_445050.1 CDS CP0504 NC_002179.2 549156 550019 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 549156..550019 Chlamydophila pneumoniae AR39 962751 NP_445051.1 CDS CP0505 NC_002179.2 550019 550888 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 550019..550888 Chlamydophila pneumoniae AR39 963011 NP_445052.1 CDS CP0506 NC_002179.2 551118 551957 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 551118..551957 Chlamydophila pneumoniae AR39 963493 NP_445053.1 CDS CP0507 NC_002179.2 552021 552827 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 552021..552827 Chlamydophila pneumoniae AR39 962748 NP_445054.1 CDS CP0510 NC_002179.2 553721 555232 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(553721..555232) Chlamydophila pneumoniae AR39 963838 NP_445055.1 CDS rpmG NC_002179.2 555226 555384 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 555226..555384 Chlamydophila pneumoniae AR39 963745 NP_445056.1 CDS CP0512 NC_002179.2 555442 556953 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 555442..556953 Chlamydophila pneumoniae AR39 963372 NP_445057.1 CDS CP0513 NC_002179.2 556956 557636 D ABC transporter ATP-binding protein; identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein 556956..557636 Chlamydophila pneumoniae AR39 962729 NP_445058.1 CDS CP0514 NC_002179.2 557675 557824 D hypothetical protein; identified by Glimmer2; hypothetical protein 557675..557824 Chlamydophila pneumoniae AR39 962740 NP_445059.1 CDS rplM NC_002179.2 557868 558317 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 557868..558317 Chlamydophila pneumoniae AR39 962808 NP_445060.1 CDS rpsI NC_002179.2 558331 558735 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 558331..558735 Chlamydophila pneumoniae AR39 963427 NP_445061.1 CDS CP0517 NC_002179.2 558781 559638 R NLP/P60 family protein; identified by match to PFAM protein family HMM PF00877; NLP/P60 family protein complement(558781..559638) Chlamydophila pneumoniae AR39 962739 NP_445062.1 CDS adk NC_002179.2 559724 560365 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(559724..560365) Chlamydophila pneumoniae AR39 962784 NP_445063.1 CDS CP0519 NC_002179.2 560728 561153 D hypothetical protein; identified by Glimmer2; hypothetical protein 560728..561153 Chlamydophila pneumoniae AR39 963679 NP_445064.1 CDS CP0520 NC_002179.2 561365 561799 D hypothetical protein; identified by Glimmer2; hypothetical protein 561365..561799 Chlamydophila pneumoniae AR39 962737 NP_445065.1 CDS CP0521 NC_002179.2 561929 563083 D hypothetical protein; identified by Glimmer2; hypothetical protein 561929..563083 Chlamydophila pneumoniae AR39 962743 NP_445066.1 CDS CP0522 NC_002179.2 563422 564588 D hypothetical protein; identified by Glimmer2; hypothetical protein 563422..564588 Chlamydophila pneumoniae AR39 963503 NP_445067.1 CDS CP0523 NC_002179.2 564608 565408 R catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase complement(564608..565408) Chlamydophila pneumoniae AR39 962735 NP_445068.1 CDS CP0524 NC_002179.2 565442 566980 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(565442..566980) Chlamydophila pneumoniae AR39 962733 NP_445069.1 CDS CP0525 NC_002179.2 567066 567530 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase complement(567066..567530) Chlamydophila pneumoniae AR39 962826 NP_445070.1 CDS pyrG NC_002179.2 567514 569127 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(567514..569127) Chlamydophila pneumoniae AR39 962734 NP_445071.1 CDS CP0527 NC_002179.2 569103 569867 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(569103..569867) Chlamydophila pneumoniae AR39 963770 NP_445072.1 CDS CP0528 NC_002179.2 569893 570015 D hypothetical protein; identified by Glimmer2; hypothetical protein 569893..570015 Chlamydophila pneumoniae AR39 962767 NP_445073.1 CDS CP0529 NC_002179.2 570043 570738 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 570043..570738 Chlamydophila pneumoniae AR39 963088 NP_445074.1 CDS CP0530 NC_002179.2 570773 570892 D hypothetical protein; identified by Glimmer2; hypothetical protein 570773..570892 Chlamydophila pneumoniae AR39 963692 NP_445075.1 CDS CP0531 NC_002179.2 570859 571038 D hypothetical protein; identified by Glimmer2; hypothetical protein 570859..571038 Chlamydophila pneumoniae AR39 962763 NP_445076.1 CDS CP0532 NC_002179.2 571161 572054 D hypothetical protein; identified by Glimmer2; hypothetical protein 571161..572054 Chlamydophila pneumoniae AR39 962731 NP_445077.1 CDS CP0533 NC_002179.2 572326 573033 D ABC transporter ATP-binding protein; identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein 572326..573033 Chlamydophila pneumoniae AR39 963305 NP_445078.1 CDS CP0534 NC_002179.2 573177 573710 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 573177..573710 Chlamydophila pneumoniae AR39 962752 NP_445079.1 CDS CP0535 NC_002179.2 573720 574955 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(573720..574955) Chlamydophila pneumoniae AR39 962732 NP_445080.1 CDS CP0536 NC_002179.2 575173 575874 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 575173..575874 Chlamydophila pneumoniae AR39 962730 NP_445081.1 CDS CP0537 NC_002179.2 575867 576277 D lipoprotein, ; identified by match to PROSITE PS00013; disulfide oxidoreductase 575867..576277 Chlamydophila pneumoniae AR39 963453 NP_445082.1 CDS CP0538 NC_002179.2 576313 576717 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(576313..576717) Chlamydophila pneumoniae AR39 963781 NP_445083.1 CDS CP0539 NC_002179.2 576739 577410 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(576739..577410) Chlamydophila pneumoniae AR39 962727 NP_445084.1 CDS CP0540 NC_002179.2 577457 577627 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(577457..577627) Chlamydophila pneumoniae AR39 963275 NP_445085.1 CDS CP0541 NC_002179.2 577606 577848 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(577606..577848) Chlamydophila pneumoniae AR39 963277 NP_445086.1 CDS CP0542 NC_002179.2 577947 578327 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(577947..578327) Chlamydophila pneumoniae AR39 963597 NP_445087.1 CDS CP0543 NC_002179.2 578438 578779 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(578438..578779) Chlamydophila pneumoniae AR39 962726 NP_445088.1 CDS CP0544 NC_002179.2 579216 579626 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(579216..579626) Chlamydophila pneumoniae AR39 963171 NP_445089.1 CDS CP0545 NC_002179.2 580042 580587 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(580042..580587) Chlamydophila pneumoniae AR39 963172 NP_445090.1 CDS CP0546 NC_002179.2 580808 581926 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine); queuine tRNA-ribosyltransferase complement(580808..581926) Chlamydophila pneumoniae AR39 962725 NP_445091.1 CDS CP0547 NC_002179.2 582135 582704 D hypothetical protein; identified by Glimmer2; hypothetical protein 582135..582704 Chlamydophila pneumoniae AR39 962777 NP_445092.1 CDS CP0548 NC_002179.2 582701 583369 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(582701..583369) Chlamydophila pneumoniae AR39 962713 NP_445093.1 CDS CP0549 NC_002179.2 583674 584111 D hypothetical protein; identified by Glimmer2; hypothetical protein 583674..584111 Chlamydophila pneumoniae AR39 962722 NP_445094.1 CDS CP0550 NC_002179.2 584267 585526 D hypothetical protein; identified by Glimmer2; hypothetical protein 584267..585526 Chlamydophila pneumoniae AR39 962766 NP_445095.1 CDS CP0551 NC_002179.2 585625 586839 D hypothetical protein; identified by Glimmer2; hypothetical protein 585625..586839 Chlamydophila pneumoniae AR39 962775 NP_445096.1 CDS CP0552 NC_002179.2 586940 587071 D hypothetical protein; identified by Glimmer2; hypothetical protein 586940..587071 Chlamydophila pneumoniae AR39 962720 NP_445097.1 CDS CP0553 NC_002179.2 587223 588404 D hypothetical protein; identified by Glimmer2; hypothetical protein 587223..588404 Chlamydophila pneumoniae AR39 963373 NP_445098.1 CDS CP0554 NC_002179.2 588533 588829 D hypothetical protein; identified by Glimmer2; hypothetical protein 588533..588829 Chlamydophila pneumoniae AR39 963374 NP_445099.1 CDS CP0555 NC_002179.2 588905 589852 D hypothetical protein; identified by Glimmer2; hypothetical protein 588905..589852 Chlamydophila pneumoniae AR39 962827 NP_445100.1 CDS CP0557 NC_002179.2 590014 590259 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(590014..590259) Chlamydophila pneumoniae AR39 962719 NP_445101.1 CDS CP0558 NC_002179.2 590350 590475 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(590350..590475) Chlamydophila pneumoniae AR39 963758 NP_445102.1 CDS CP0559 NC_002179.2 590684 592336 R catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase complement(590684..592336) Chlamydophila pneumoniae AR39 962750 NP_445103.1 CDS CP0560 NC_002179.2 592669 594081 R sodium:sulfate symporter family protein; identified by match to PFAM protein family HMM PF00939; sodium:sulfate symporter family protein complement(592669..594081) Chlamydophila pneumoniae AR39 963469 NP_445104.1 CDS CP0561 NC_002179.2 594125 594880 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(594125..594880) Chlamydophila pneumoniae AR39 962710 NP_445105.1 CDS CP0562 NC_002179.2 594959 595156 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(594959..595156) Chlamydophila pneumoniae AR39 963784 NP_445106.1 CDS CP0563 NC_002179.2 595284 595472 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(595284..595472) Chlamydophila pneumoniae AR39 962824 NP_445107.1 CDS CP0564 NC_002179.2 595484 596281 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(595484..596281) Chlamydophila pneumoniae AR39 963099 NP_445108.1 CDS CP0565 NC_002179.2 596786 597574 R similar to SP:P42065 PID:677944 GB:AL009126; identified by sequence similarity; peptide ABC transporter ATP-binding protein complement(596786..597574) Chlamydophila pneumoniae AR39 962796 NP_445109.1 CDS CP0566 NC_002179.2 597571 598425 R similar to GB:M57689 SP:P24136 GB:X56347 PID:143607 PID:580898; identified by sequence similarity; peptide ABC transporter ATP-binding protein complement(597571..598425) Chlamydophila pneumoniae AR39 962706 NP_445110.1 CDS CP0567 NC_002179.2 598418 599272 R similar to GB:M57689 SP:P24139 GB:X56347 PID:143606 PID:40007; identified by sequence similarity; peptide ABC transporter permease complement(598418..599272) Chlamydophila pneumoniae AR39 963791 NP_445111.1 CDS CP0568 NC_002179.2 599303 600247 R similar to SP:P24138 GB:X56347 PID:580897 GB:AL009126; identified by sequence similarity; peptide ABC transporter permease complement(599303..600247) Chlamydophila pneumoniae AR39 963321 NP_445112.1 CDS CP0569 NC_002179.2 600540 602126 R similar to GB:M57689 SP:P24141 GB:X56347 PID:143603 PID:40005; identified by sequence similarity; peptide ABC transporter substrate-binding protein complement(600540..602126) Chlamydophila pneumoniae AR39 962704 NP_445113.1 CDS CP0570 NC_002179.2 602404 603711 R similar to GB:M57689 SP:P24141 GB:X56347 PID:143603 PID:40005; identified by sequence similarity; peptide ABC transporter substrate-binding protein complement(602404..603711) Chlamydophila pneumoniae AR39 963496 NP_445114.1 CDS CP0571 NC_002179.2 603767 605350 R similar to GB:M57689 SP:P24141 GB:X56347 PID:143603 PID:40005; identified by sequence similarity; peptide ABC transporter substrate-binding protein complement(603767..605350) Chlamydophila pneumoniae AR39 962789 NP_445115.1 CDS CP0572 NC_002179.2 605501 607099 R similar to GB:M57689 SP:P24141 GB:X56347 PID:143603 PID:40005; identified by sequence similarity; peptide ABC transporter substrate-binding protein complement(605501..607099) Chlamydophila pneumoniae AR39 962703 NP_445116.1 CDS CP0573 NC_002179.2 607045 608079 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(607045..608079) Chlamydophila pneumoniae AR39 963718 NP_445117.1 CDS CP0574 NC_002179.2 608163 608606 D similar to GB:M17532 SP:P15282 GB:X13968 PID:145356 PID:43307; identified by sequence similarity; arginine repressor 608163..608606 Chlamydophila pneumoniae AR39 963717 NP_445118.1 CDS CP0575 NC_002179.2 608655 609308 D similar to SP:P10345 PID:41572 GB:U00096 PID:1651370 PID:1787030; identified by sequence similarity; amino acid ABC transporter permease 608655..609308 Chlamydophila pneumoniae AR39 962702 NP_445119.1 CDS CP0576 NC_002179.2 609298 609978 D similar to SP:P41076 PID:624632 GB:U00096 PID:1651271 PID:1778570; identified by sequence similarity; amino acid ABC transporter ATP-binding protein 609298..609978 Chlamydophila pneumoniae AR39 963046 NP_445120.1 CDS CP0577 NC_002179.2 610012 611370 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(610012..611370) Chlamydophila pneumoniae AR39 962921 NP_445121.1 CDS CP0578 NC_002179.2 611461 614889 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(611461..614889) Chlamydophila pneumoniae AR39 962701 NP_445122.1 CDS CP0579 NC_002179.2 614886 616178 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(614886..616178) Chlamydophila pneumoniae AR39 963546 NP_445123.1 CDS CP0580 NC_002179.2 616241 617041 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(616241..617041) Chlamydophila pneumoniae AR39 962814 NP_445124.1 CDS CP0581 NC_002179.2 617218 618390 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(617218..618390) Chlamydophila pneumoniae AR39 962700 NP_445125.1 CDS CP0582 NC_002179.2 618445 618552 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(618445..618552) Chlamydophila pneumoniae AR39 963772 NP_445126.1 CDS CP0583 NC_002179.2 618838 619527 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 618838..619527 Chlamydophila pneumoniae AR39 963763 NP_445127.1 CDS CP0584 NC_002179.2 619514 620071 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 619514..620071 Chlamydophila pneumoniae AR39 962836 NP_445128.1 CDS CP0585 NC_002179.2 620094 620597 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 620094..620597 Chlamydophila pneumoniae AR39 962699 NP_445129.1 CDS CP0586 NC_002179.2 620594 621958 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 620594..621958 Chlamydophila pneumoniae AR39 962783 NP_445130.1 CDS CP0587 NC_002179.2 622114 622515 D hypothetical protein; identified by Glimmer2; hypothetical protein 622114..622515 Chlamydophila pneumoniae AR39 962764 NP_445131.1 CDS CP0588 NC_002179.2 622383 622937 D hypothetical protein; identified by Glimmer2; hypothetical protein 622383..622937 Chlamydophila pneumoniae AR39 962697 NP_445132.1 CDS CP0589 NC_002179.2 622886 623236 D hypothetical protein; identified by Glimmer2; hypothetical protein 622886..623236 Chlamydophila pneumoniae AR39 963724 NP_445133.1 CDS CP0590 NC_002179.2 623237 623503 D hypothetical protein; identified by Glimmer2; hypothetical protein 623237..623503 Chlamydophila pneumoniae AR39 963691 NP_445134.1 CDS CP0591 NC_002179.2 623683 623775 D hypothetical protein; identified by Glimmer2; hypothetical protein 623683..623775 Chlamydophila pneumoniae AR39 962696 NP_445135.1 CDS CP0592 NC_002179.2 623830 624684 D hypothetical protein; identified by Glimmer2; hypothetical protein 623830..624684 Chlamydophila pneumoniae AR39 963854 NP_445136.1 CDS CP0593 NC_002179.2 624768 626003 R MAC/perforin family protein; identified by match to PFAM protein family HMM PF01823; hypothetical protein complement(624768..626003) Chlamydophila pneumoniae AR39 963765 NP_445137.1 CDS CP0594 NC_002179.2 626011 626391 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(626011..626391) Chlamydophila pneumoniae AR39 962692 NP_445138.1 CDS CP0595 NC_002179.2 626562 627056 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(626562..627056) Chlamydophila pneumoniae AR39 963163 NP_445139.1 CDS CP0596 NC_002179.2 627010 627138 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(627010..627138) Chlamydophila pneumoniae AR39 962707 NP_445140.1 CDS CP0597 NC_002179.2 627302 627577 D hypothetical protein; identified by Glimmer2; hypothetical protein 627302..627577 Chlamydophila pneumoniae AR39 963301 NP_445141.1 CDS CP0599 NC_002179.2 628854 630143 D similar to GB:M10101 SP:P04079 PID:146276 GB:U00096 PID:1788854; identified by sequence similarity; GMP synthase 628854..630143 Chlamydophila pneumoniae AR39 963335 NP_445142.1 CDS CP0600 NC_002179.2 630263 631267 D hypothetical protein; identified by Glimmer2; hypothetical protein 630263..631267 Chlamydophila pneumoniae AR39 963300 NP_445143.1 CDS CP0601 NC_002179.2 631378 631473 D hypothetical protein; identified by Glimmer2; hypothetical protein 631378..631473 Chlamydophila pneumoniae AR39 963161 NP_445144.1 CDS CP0602 NC_002179.2 631788 632582 D hypothetical protein; identified by Glimmer2; hypothetical protein 631788..632582 Chlamydophila pneumoniae AR39 963412 NP_445145.1 CDS CP0603 NC_002179.2 632648 632875 D hypothetical protein; identified by Glimmer2; hypothetical protein 632648..632875 Chlamydophila pneumoniae AR39 963294 NP_445146.1 CDS CP0604 NC_002179.2 632983 633315 D hypothetical protein; identified by Glimmer2; hypothetical protein 632983..633315 Chlamydophila pneumoniae AR39 963304 NP_445147.1 CDS CP0605 NC_002179.2 633324 633659 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(633324..633659) Chlamydophila pneumoniae AR39 963287 NP_445148.1 CDS CP0606 NC_002179.2 633704 634291 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(633704..634291) Chlamydophila pneumoniae AR39 963290 NP_445149.1 CDS CP0607 NC_002179.2 634288 634845 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(634288..634845) Chlamydophila pneumoniae AR39 963291 NP_445150.1 CDS CP0608 NC_002179.2 634892 635263 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(634892..635263) Chlamydophila pneumoniae AR39 963298 NP_445151.1 CDS CP0609 NC_002179.2 635461 636489 D hypothetical protein; identified by Glimmer2; hypothetical protein 635461..636489 Chlamydophila pneumoniae AR39 963297 NP_445152.1 CDS CP0610 NC_002179.2 636667 637494 D similar to GP:6458779; identified by sequence similarity; dienelactone hydrolase family protein 636667..637494 Chlamydophila pneumoniae AR39 963289 NP_445153.1 CDS CP0611 NC_002179.2 637498 639132 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 637498..639132 Chlamydophila pneumoniae AR39 963680 NP_445154.1 CDS CP0612 NC_002179.2 639428 639736 D hypothetical protein; identified by Glimmer2; hypothetical protein 639428..639736 Chlamydophila pneumoniae AR39 963681 NP_445155.1 CDS CP0613 NC_002179.2 639770 640309 D similar to GB:X80061 PID:510823; identified by sequence similarity; KDO-transferase 2 639770..640309 Chlamydophila pneumoniae AR39 963286 NP_445156.1 CDS CP0614 NC_002179.2 640477 640905 D hypothetical protein; identified by Glimmer2; hypothetical protein 640477..640905 Chlamydophila pneumoniae AR39 963100 NP_445157.1 CDS CP0615 NC_002179.2 640892 641434 D similar to GB:X80061 PID:510823; identified by sequence similarity; KDO-transferase 2 640892..641434 Chlamydophila pneumoniae AR39 962859 NP_445158.1 CDS CP0616 NC_002179.2 641510 641716 D hypothetical protein; identified by Glimmer2; hypothetical protein 641510..641716 Chlamydophila pneumoniae AR39 963284 NP_445159.1 CDS CP0617 NC_002179.2 641996 643309 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(641996..643309) Chlamydophila pneumoniae AR39 963279 NP_445160.1 CDS leuS NC_002179.2 643306 645768 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(643306..645768) Chlamydophila pneumoniae AR39 963282 NP_445161.1 CDS CP0619 NC_002179.2 645808 645930 D hypothetical protein; identified by Glimmer2; hypothetical protein 645808..645930 Chlamydophila pneumoniae AR39 963283 NP_445162.1 CDS CP0620 NC_002179.2 645936 646886 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 645936..646886 Chlamydophila pneumoniae AR39 962756 NP_445163.1 CDS CP0621 NC_002179.2 646955 647074 D hypothetical protein; identified by Glimmer2; hypothetical protein 646955..647074 Chlamydophila pneumoniae AR39 963288 NP_445164.1 CDS CP0622 NC_002179.2 647113 648579 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 647113..648579 Chlamydophila pneumoniae AR39 963091 NP_445165.1 CDS CP0623 NC_002179.2 648754 653367 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(648754..653367) Chlamydophila pneumoniae AR39 963281 NP_445166.1 CDS ligA NC_002179.2 653498 655486 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(653498..655486) Chlamydophila pneumoniae AR39 963280 NP_445167.1 CDS CP0625 NC_002179.2 655496 657355 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(655496..657355) Chlamydophila pneumoniae AR39 963272 NP_445168.1 CDS CP0626 NC_002179.2 657527 657976 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(657527..657976) Chlamydophila pneumoniae AR39 963274 NP_445169.1 CDS CP0627 NC_002179.2 658103 658588 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(658103..658588) Chlamydophila pneumoniae AR39 962747 NP_445170.1 CDS CP0628 NC_002179.2 658829 660397 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(658829..660397) Chlamydophila pneumoniae AR39 963253 NP_445171.1 CDS CP0629 NC_002179.2 660638 663256 R similar to GB:M29364 SP:P03815 GB:V00350 GB:X57620 PID:1236633; identified by sequence similarity; ATP-dependent Clp protease subunit B complement(660638..663256) Chlamydophila pneumoniae AR39 963270 NP_445172.1 CDS CP0630 NC_002179.2 663866 664990 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 663866..664990 Chlamydophila pneumoniae AR39 963276 NP_445173.1 CDS CP0631 NC_002179.2 665399 666094 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 665399..666094 Chlamydophila pneumoniae AR39 963273 NP_445174.1 CDS CP0632 NC_002179.2 666091 666531 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 666091..666531 Chlamydophila pneumoniae AR39 963266 NP_445175.1 CDS CP0633 NC_002179.2 666545 667111 D similar to GP:5817606; identified by sequence similarity; hypothetical protein 666545..667111 Chlamydophila pneumoniae AR39 963259 NP_445176.1 CDS CP0634 NC_002179.2 667182 668504 D catalyzes the formation of 5-aminolevulinate from (S)-4-amino-5-oxopentanoate; glutamate-1-semialdehyde aminotransferase 667182..668504 Chlamydophila pneumoniae AR39 963262 NP_445177.1 CDS CP0635 NC_002179.2 668947 669702 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 668947..669702 Chlamydophila pneumoniae AR39 963264 NP_445178.1 CDS CP0636 NC_002179.2 669800 671635 D similar to GB:Z32522 PID:510140 SP:P54124 PID:1771208; identified by sequence similarity; oligoendopeptidase F 669800..671635 Chlamydophila pneumoniae AR39 963251 NP_445179.1 CDS groES NC_002179.2 671753 672061 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; molecular chaperone GroES 671753..672061 Chlamydophila pneumoniae AR39 963255 NP_445180.1 CDS groEL NC_002179.2 672103 673737 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 672103..673737 Chlamydophila pneumoniae AR39 963256 NP_445181.1 CDS CP0639 NC_002179.2 673867 674640 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 673867..674640 Chlamydophila pneumoniae AR39 963257 NP_445182.1 CDS CP0640 NC_002179.2 674637 675614 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(674637..675614) Chlamydophila pneumoniae AR39 963245 NP_445183.1 CDS CP0641 NC_002179.2 675618 676658 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(675618..676658) Chlamydophila pneumoniae AR39 963250 NP_445184.1 CDS CP0642 NC_002179.2 676956 678140 D hypothetical protein; identified by Glimmer2; hypothetical protein 676956..678140 Chlamydophila pneumoniae AR39 963254 NP_445185.1 CDS CP0643 NC_002179.2 678145 678924 R similar to PID:1419219 PID:1431219 PID:886081; identified by sequence similarity; biotin apo-protein ligase-related protein complement(678145..678924) Chlamydophila pneumoniae AR39 963252 NP_445186.1 CDS CP0644 NC_002179.2 678918 679040 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(678918..679040) Chlamydophila pneumoniae AR39 963249 NP_445187.1 CDS CP0645 NC_002179.2 679058 680074 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 679058..680074 Chlamydophila pneumoniae AR39 963247 NP_445188.1 CDS CP0646 NC_002179.2 680113 682392 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(680113..682392) Chlamydophila pneumoniae AR39 963244 NP_445189.1 CDS CP0647 NC_002179.2 682337 682507 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(682337..682507) Chlamydophila pneumoniae AR39 963243 NP_445190.1 CDS CP0648 NC_002179.2 682593 683105 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(682593..683105) Chlamydophila pneumoniae AR39 963326 NP_445191.1 CDS CP0649 NC_002179.2 683130 684587 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(683130..684587) Chlamydophila pneumoniae AR39 962711 NP_445192.1 CDS CP0650 NC_002179.2 685232 687430 D similar to SP:P04993 GB:X04581 GB:X04582 PID:42683 PID:42691; identified by sequence similarity; exodeoxyribonuclease V, alpha subunit 685232..687430 Chlamydophila pneumoniae AR39 963241 NP_445193.1 CDS CP0651 NC_002179.2 687475 689130 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(687475..689130) Chlamydophila pneumoniae AR39 963233 NP_445194.1 CDS CP0652 NC_002179.2 689130 689423 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(689130..689423) Chlamydophila pneumoniae AR39 963278 NP_445195.1 CDS gmk NC_002179.2 689420 690037 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(689420..690037) Chlamydophila pneumoniae AR39 963237 NP_445196.1 CDS rnhB NC_002179.2 690034 690678 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(690034..690678) Chlamydophila pneumoniae AR39 963710 NP_445197.1 CDS rplS NC_002179.2 690734 691099 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(690734..691099) Chlamydophila pneumoniae AR39 963047 NP_445198.1 CDS trmD NC_002179.2 691127 692212 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Chlamydial proteins show a C-terminal extension of unknown function; tRNA (guanine-N(1)-)-methyltransferase complement(691127..692212) Chlamydophila pneumoniae AR39 963709 NP_445199.1 CDS rpsP NC_002179.2 692226 692585 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(692226..692585) Chlamydophila pneumoniae AR39 963235 NP_445200.1 CDS CP0658 NC_002179.2 692576 693922 R similar to SP:P07019 PID:43142 GB:U00096 PID:1788963; identified by sequence similarity; signal recognition particle protein FFH complement(692576..693922) Chlamydophila pneumoniae AR39 963258 NP_445201.1 CDS CP0659 NC_002179.2 693937 694803 R HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(693937..694803) Chlamydophila pneumoniae AR39 963268 NP_445202.1 CDS prfA NC_002179.2 694793 695866 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(694793..695866) Chlamydophila pneumoniae AR39 963234 NP_445203.1 CDS rpmE2 NC_002179.2 696105 696434 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B complement(696105..696434) Chlamydophila pneumoniae AR39 963238 NP_445204.1 CDS CP0662 NC_002179.2 696515 697270 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 696515..697270 Chlamydophila pneumoniae AR39 963240 NP_445205.1 CDS CP0663 NC_002179.2 697357 697470 D hypothetical protein; identified by Glimmer2; hypothetical protein 697357..697470 Chlamydophila pneumoniae AR39 963242 NP_445206.1 CDS CP0664 NC_002179.2 697467 699377 D similar to GB:K00426 SP:P00803 PID:146600 PID:987643 GB:U00096; identified by sequence similarity; signal peptidase I 697467..699377 Chlamydophila pneumoniae AR39 963232 NP_445207.1 CDS ileS NC_002179.2 699415 702546 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(699415..702546) Chlamydophila pneumoniae AR39 963852 NP_445208.1 CDS CP0666 NC_002179.2 703344 703901 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 703344..703901 Chlamydophila pneumoniae AR39 963853 NP_445209.1 CDS CP0667 NC_002179.2 704039 704812 D hypothetical protein; identified by Glimmer2; hypothetical protein 704039..704812 Chlamydophila pneumoniae AR39 963231 NP_445210.2 CDS CP0668 NC_002179.2 704824 706110 R similar to GB:U00096 PID:1778579 PID:1786881; identified by sequence similarity; phoH family protein complement(704824..706110) Chlamydophila pneumoniae AR39 963230 NP_445211.1 CDS CP0669 NC_002179.2 706354 707175 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 706354..707175 Chlamydophila pneumoniae AR39 963226 NP_445212.1 CDS CP0670 NC_002179.2 707326 708528 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 707326..708528 Chlamydophila pneumoniae AR39 963228 NP_445213.1 CDS CP0671 NC_002179.2 708687 709721 R similar to GB:U00096 PID:1651480 PID:1787213; identified by sequence similarity; cytochrome D ubiquinol oxidase, subunit II complement(708687..709721) Chlamydophila pneumoniae AR39 963771 NP_445214.1 CDS CP0672 NC_002179.2 709732 711078 R similar to GB:U00096 PID:1651479 PID:1787212; identified by sequence similarity; cytochrome D ubiquinol oxidase, subunit I complement(709732..711078) Chlamydophila pneumoniae AR39 963098 NP_445215.1 CDS CP0673 NC_002179.2 711269 712063 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 711269..712063 Chlamydophila pneumoniae AR39 962690 NP_445216.1 CDS CP0674 NC_002179.2 712045 713322 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 712045..713322 Chlamydophila pneumoniae AR39 963227 NP_445217.1 CDS CP0675 NC_002179.2 713358 713657 D hypothetical protein; identified by Glimmer2; hypothetical protein 713358..713657 Chlamydophila pneumoniae AR39 963611 NP_445218.1 CDS CP0676 NC_002179.2 713710 715098 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 713710..715098 Chlamydophila pneumoniae AR39 963757 NP_445219.1 CDS CP0677 NC_002179.2 715192 716646 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(715192..716646) Chlamydophila pneumoniae AR39 963225 NP_445220.1 CDS CP0678 NC_002179.2 716887 722367 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 716887..722367 Chlamydophila pneumoniae AR39 963214 NP_445221.1 CDS pknD NC_002179.2 722408 725206 R PknD; responsible for phosphorylation of proteins on serine and threonine residues; similar to eukaryotic Ser/Thr kinases; in Chlamydia trachomatis itseems to interact with Pkn1, another serine/threonine-protein kinase; serine/threonine-protein kinase complement(722408..725206) Chlamydophila pneumoniae AR39 963217 NP_445222.1 CDS valS NC_002179.2 725227 728049 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(725227..728049) Chlamydophila pneumoniae AR39 963219 NP_445223.1 CDS CP0681 NC_002179.2 728183 728704 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(728183..728704) Chlamydophila pneumoniae AR39 962831 NP_445224.1 CDS CP0682 NC_002179.2 728625 729050 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(728625..729050) Chlamydophila pneumoniae AR39 963218 NP_445225.1 CDS CP0683 NC_002179.2 729145 731127 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I complement(729145..731127) Chlamydophila pneumoniae AR39 963220 NP_445226.1 CDS CP0684 NC_002179.2 731118 731747 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(731118..731747) Chlamydophila pneumoniae AR39 963216 NP_445227.1 CDS CP0685 NC_002179.2 731732 733048 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(731732..733048) Chlamydophila pneumoniae AR39 963215 NP_445228.1 CDS CP0686 NC_002179.2 733053 734828 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(733053..734828) Chlamydophila pneumoniae AR39 963222 NP_445229.1 CDS CP0687 NC_002179.2 734822 735622 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(734822..735622) Chlamydophila pneumoniae AR39 963221 NP_445230.1 CDS CP0688 NC_002179.2 735671 736297 R produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E complement(735671..736297) Chlamydophila pneumoniae AR39 963213 NP_445231.1 CDS CP0689 NC_002179.2 736476 736610 D hypothetical protein; identified by Glimmer2; hypothetical protein 736476..736610 Chlamydophila pneumoniae AR39 963212 NP_445232.1 CDS CP0690 NC_002179.2 736695 737438 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 736695..737438 Chlamydophila pneumoniae AR39 963210 NP_445233.1 CDS CP0691 NC_002179.2 737447 737839 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(737447..737839) Chlamydophila pneumoniae AR39 963211 NP_445234.1 CDS CP0692 NC_002179.2 737886 738875 R Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B complement(737886..738875) Chlamydophila pneumoniae AR39 963207 NP_445235.1 CDS CP0693 NC_002179.2 738978 743171 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(738978..743171) Chlamydophila pneumoniae AR39 963208 NP_445236.1 CDS rpoB NC_002179.2 743183 746971 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(743183..746971) Chlamydophila pneumoniae AR39 963393 NP_445237.1 CDS rplL NC_002179.2 747078 747467 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(747078..747467) Chlamydophila pneumoniae AR39 963206 NP_445238.1 CDS rplJ NC_002179.2 747511 748023 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(747511..748023) Chlamydophila pneumoniae AR39 963209 NP_445239.1 CDS rplA NC_002179.2 748039 748737 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(748039..748737) Chlamydophila pneumoniae AR39 963201 NP_445240.1 CDS rplK NC_002179.2 748764 749189 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(748764..749189) Chlamydophila pneumoniae AR39 963203 NP_445241.1 CDS nusG NC_002179.2 749296 749844 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(749296..749844) Chlamydophila pneumoniae AR39 963204 NP_445242.1 CDS secE NC_002179.2 749849 750100 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(749849..750100) Chlamydophila pneumoniae AR39 963779 NP_445243.1 CDS tuf NC_002179.2 750244 751428 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(750244..751428) Chlamydophila pneumoniae AR39 963722 NP_445244.1 CDS infA NC_002179.2 751625 751846 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(751625..751846) Chlamydophila pneumoniae AR39 963714 NP_445245.1 CDS CP0703 NC_002179.2 752117 753148 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 752117..753148 Chlamydophila pneumoniae AR39 963200 NP_445246.1 CDS CP0704 NC_002179.2 753145 753606 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 753145..753606 Chlamydophila pneumoniae AR39 963194 NP_445247.1 CDS CP0705 NC_002179.2 754112 755674 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(754112..755674) Chlamydophila pneumoniae AR39 963196 NP_445248.1 CDS CP0706 NC_002179.2 756293 756868 D hypothetical protein; identified by Glimmer2; hypothetical protein 756293..756868 Chlamydophila pneumoniae AR39 963197 NP_445249.1 CDS CP0707 NC_002179.2 757140 758243 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(757140..758243) Chlamydophila pneumoniae AR39 963205 NP_445250.1 CDS CP0708 NC_002179.2 758538 760271 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(758538..760271) Chlamydophila pneumoniae AR39 963198 NP_445251.1 CDS CP0709 NC_002179.2 760542 762293 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(760542..762293) Chlamydophila pneumoniae AR39 963192 NP_445252.1 CDS CP0710 NC_002179.2 762617 762850 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(762617..762850) Chlamydophila pneumoniae AR39 963195 NP_445253.1 CDS CP0711 NC_002179.2 762926 763084 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(762926..763084) Chlamydophila pneumoniae AR39 963190 NP_445254.1 CDS CP0712 NC_002179.2 763327 763443 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(763327..763443) Chlamydophila pneumoniae AR39 963189 NP_445255.1 CDS CP0713 NC_002179.2 763503 764888 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(763503..764888) Chlamydophila pneumoniae AR39 963186 NP_445256.1 CDS CP0714 NC_002179.2 764985 765662 R PTS system, IIA component; identified by match to PFAM protein family HMM PF00359; PTS system, IIA component complement(764985..765662) Chlamydophila pneumoniae AR39 963187 NP_445257.1 CDS CP0715 NC_002179.2 765665 766141 R PTS system, IIA component; identified by match to PFAM protein family HMM PF00359; PTS system, IIA component complement(765665..766141) Chlamydophila pneumoniae AR39 963188 NP_445258.1 CDS dut NC_002179.2 766143 766580 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(766143..766580) Chlamydophila pneumoniae AR39 963183 NP_445259.1 CDS CP0717 NC_002179.2 766631 767557 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(766631..767557) Chlamydophila pneumoniae AR39 963184 NP_445260.1 CDS CP0718 NC_002179.2 767639 768262 R similar to SP:P31161 PID:1408318 PID:1627745 PID:217298; identified by sequence similarity; superoxide dismutase complement(767639..768262) Chlamydophila pneumoniae AR39 963182 NP_445261.1 CDS CP0719 NC_002179.2 768447 770243 R phosphoglucomutase/phosphomannomutase, ; identified by match to PFAM protein family HMM PF00408; phosphoglucomutase/phosphomannomutase complement(768447..770243) Chlamydophila pneumoniae AR39 963199 NP_445262.1 CDS CP0720 NC_002179.2 770603 771067 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(770603..771067) Chlamydophila pneumoniae AR39 963178 NP_445263.1 CDS rnc NC_002179.2 771173 771886 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 771173..771886 Chlamydophila pneumoniae AR39 963180 NP_445264.1 CDS CP0722 NC_002179.2 771852 773213 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 771852..773213 Chlamydophila pneumoniae AR39 962773 NP_445265.1 CDS CP0723 NC_002179.2 773191 773895 D transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 773191..773895 Chlamydophila pneumoniae AR39 962761 NP_445266.1 CDS CP0724 NC_002179.2 773982 774137 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(773982..774137) Chlamydophila pneumoniae AR39 963177 NP_445267.1 CDS CP0725 NC_002179.2 774895 775377 D hypothetical protein; identified by Glimmer2; hypothetical protein 774895..775377 Chlamydophila pneumoniae AR39 963458 NP_445268.1 CDS CP0726 NC_002179.2 775387 777504 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(775387..777504) Chlamydophila pneumoniae AR39 963459 NP_445269.1 CDS CP0727 NC_002179.2 777536 777688 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(777536..777688) Chlamydophila pneumoniae AR39 963175 NP_445270.1 CDS CP0728 NC_002179.2 777925 780132 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(777925..780132) Chlamydophila pneumoniae AR39 963344 NP_445271.1 CDS CP0729 NC_002179.2 780420 780782 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(780420..780782) Chlamydophila pneumoniae AR39 962709 NP_445272.1 CDS CP0730 NC_002179.2 780826 782754 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(780826..782754) Chlamydophila pneumoniae AR39 963174 NP_445273.1 CDS CP0731 NC_002179.2 782873 783019 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(782873..783019) Chlamydophila pneumoniae AR39 963191 NP_445274.1 CDS CP0732 NC_002179.2 783016 783798 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(783016..783798) Chlamydophila pneumoniae AR39 963176 NP_445275.1 CDS CP0733 NC_002179.2 783856 785205 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(783856..785205) Chlamydophila pneumoniae AR39 963173 NP_445276.1 CDS CP0734 NC_002179.2 785447 785542 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(785447..785542) Chlamydophila pneumoniae AR39 963164 NP_445277.1 CDS CP0735 NC_002179.2 785558 786886 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma/tau 785558..786886 Chlamydophila pneumoniae AR39 963165 NP_445278.1 CDS CP0736 NC_002179.2 786951 787241 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 786951..787241 Chlamydophila pneumoniae AR39 963167 NP_445279.1 CDS CP0737 NC_002179.2 787367 789082 R similar to SP:P42014 PID:529003; identified by sequence similarity; phosphoenolpyruvate-protein phosphotransferase complement(787367..789082) Chlamydophila pneumoniae AR39 963169 NP_445280.1 CDS CP0738 NC_002179.2 789083 789409 R similar to SP:P08877 PID:48682 GB:AL009126; identified by sequence similarity; phosphocarrier protein HPr complement(789083..789409) Chlamydophila pneumoniae AR39 963168 NP_445281.1 CDS CP0739 NC_002179.2 789402 789887 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(789402..789887) Chlamydophila pneumoniae AR39 963166 NP_445282.1 CDS CP0740 NC_002179.2 789934 790257 D hypothetical protein; identified by Glimmer2; hypothetical protein 789934..790257 Chlamydophila pneumoniae AR39 962745 NP_445283.1 CDS CP0741 NC_002179.2 790172 791635 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 790172..791635 Chlamydophila pneumoniae AR39 963704 NP_445284.1 CDS CP0742 NC_002179.2 791717 792994 D hypothetical protein; identified by Glimmer2; hypothetical protein 791717..792994 Chlamydophila pneumoniae AR39 963162 NP_445285.1 CDS CP0743 NC_002179.2 793027 795063 R similar to GB:M97391 SP:P37941 PID:142612 PID:1303943 GB:AL009126; identified by sequence similarity; 2-oxoisovalerate dehydrogenase subunit E1 alpha/beta complement(793027..795063) Chlamydophila pneumoniae AR39 962793 NP_445286.1 CDS CP0744 NC_002179.2 795100 796278 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(795100..796278) Chlamydophila pneumoniae AR39 963160 NP_445287.1 CDS rpsU NC_002179.2 796314 796490 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(796314..796490) Chlamydophila pneumoniae AR39 963159 NP_445288.1 CDS CP0746 NC_002179.2 796669 797310 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(796669..797310) Chlamydophila pneumoniae AR39 963439 NP_445289.1 CDS CP0747 NC_002179.2 797446 797814 D hypothetical protein; identified by Glimmer2; hypothetical protein 797446..797814 Chlamydophila pneumoniae AR39 963437 NP_445290.1 CDS CP0748 NC_002179.2 797876 798661 D hypothetical protein; identified by Glimmer2; hypothetical protein 797876..798661 Chlamydophila pneumoniae AR39 962844 NP_445291.1 CDS CP0749 NC_002179.2 798967 801426 D similar to SP:P36777 PID:414046 PID:429100; identified by sequence similarity; Lon family protease 798967..801426 Chlamydophila pneumoniae AR39 963156 NP_445292.1 CDS CP0750 NC_002179.2 801576 802442 D hypothetical protein; identified by Glimmer2; hypothetical protein 801576..802442 Chlamydophila pneumoniae AR39 963158 NP_445293.1 CDS CP0751 NC_002179.2 802597 803520 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 802597..803520 Chlamydophila pneumoniae AR39 963151 NP_445294.1 CDS xerC NC_002179.2 803605 804543 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 803605..804543 Chlamydophila pneumoniae AR39 963152 NP_445295.1 CDS CP0753 NC_002179.2 804598 806190 D ABC transporter ATP-binding protein; identified by match to PFAM protein family HMM PF00005; ABC transporter ATP-binding protein 804598..806190 Chlamydophila pneumoniae AR39 963153 NP_445296.1 CDS maf NC_002179.2 806219 806809 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 806219..806809 Chlamydophila pneumoniae AR39 962742 NP_445297.1 CDS CP0755 NC_002179.2 806791 808497 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 806791..808497 Chlamydophila pneumoniae AR39 962799 NP_445298.1 CDS CP0756 NC_002179.2 808487 810601 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 808487..810601 Chlamydophila pneumoniae AR39 963150 NP_445299.1 CDS CP0758 NC_002179.2 813695 813883 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(813695..813883) Chlamydophila pneumoniae AR39 963146 NP_445300.1 CDS CP0761 NC_002179.2 820085 822610 R similar to GP:4376270; identified by sequence similarity; polymorphic membrane protein G family protein complement(820085..822610) Chlamydophila pneumoniae AR39 963149 NP_445301.1 CDS CP0762 NC_002179.2 822979 824550 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(822979..824550) Chlamydophila pneumoniae AR39 963148 NP_445302.1 CDS CP0763 NC_002179.2 824577 825302 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(824577..825302) Chlamydophila pneumoniae AR39 963147 NP_445303.1 CDS CP0764 NC_002179.2 825445 827769 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(825445..827769) Chlamydophila pneumoniae AR39 963145 NP_445304.1 CDS CP0765 NC_002179.2 828079 829386 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(828079..829386) Chlamydophila pneumoniae AR39 963141 NP_445305.1 CDS CP0766 NC_002179.2 829513 830316 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(829513..830316) Chlamydophila pneumoniae AR39 963142 NP_445306.1 CDS CP0767 NC_002179.2 830422 830514 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(830422..830514) Chlamydophila pneumoniae AR39 963143 NP_445307.1 CDS CP0768 NC_002179.2 830626 830754 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(830626..830754) Chlamydophila pneumoniae AR39 963716 NP_445308.1 CDS CP0769 NC_002179.2 830702 833668 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(830702..833668) Chlamydophila pneumoniae AR39 963678 NP_445309.1 CDS CP0770 NC_002179.2 834306 837074 R similar to GP:4376260; identified by sequence similarity; polymorphic membrane protein G family protein complement(834306..837074) Chlamydophila pneumoniae AR39 963140 NP_445310.1 CDS gatB NC_002179.2 837365 838831 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(837365..838831) Chlamydophila pneumoniae AR39 963157 NP_445311.1 CDS gatA NC_002179.2 838828 840306 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(838828..840306) Chlamydophila pneumoniae AR39 963139 NP_445312.1 CDS gatC NC_002179.2 840323 840628 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(840323..840628) Chlamydophila pneumoniae AR39 963138 NP_445313.1 CDS CP0774 NC_002179.2 840632 840784 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(840632..840784) Chlamydophila pneumoniae AR39 963137 NP_445314.1 CDS CP0775 NC_002179.2 840919 841200 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 840919..841200 Chlamydophila pneumoniae AR39 963129 NP_445315.1 CDS CP0776 NC_002179.2 841596 842420 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(841596..842420) Chlamydophila pneumoniae AR39 963130 NP_445316.1 CDS CP0777 NC_002179.2 842593 843462 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(842593..843462) Chlamydophila pneumoniae AR39 963132 NP_445317.1 CDS CP0778 NC_002179.2 843715 843834 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(843715..843834) Chlamydophila pneumoniae AR39 963602 NP_445318.1 CDS CP0779 NC_002179.2 844107 845549 D hypothetical protein; identified by Glimmer2; hypothetical protein 844107..845549 Chlamydophila pneumoniae AR39 963693 NP_445319.1 CDS CP0780 NC_002179.2 845921 847291 D hypothetical protein; identified by Glimmer2; hypothetical protein 845921..847291 Chlamydophila pneumoniae AR39 963131 NP_445320.1 CDS CP0781 NC_002179.2 847488 847919 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(847488..847919) Chlamydophila pneumoniae AR39 963136 NP_445321.2 CDS CP0782 NC_002179.2 848174 849070 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 848174..849070 Chlamydophila pneumoniae AR39 963135 NP_445322.1 CDS def NC_002179.2 849137 849697 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(849137..849697) Chlamydophila pneumoniae AR39 963128 NP_445323.1 CDS secG NC_002179.2 849941 850297 R hypothetical protein; identified by Glimmer2; preprotein translocase subunit SecG complement(849941..850297) Chlamydophila pneumoniae AR39 963121 NP_445324.1 CDS CP0785 NC_002179.2 850534 850713 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(850534..850713) Chlamydophila pneumoniae AR39 963123 NP_445325.1 CDS tpiA NC_002179.2 850717 851481 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(850717..851481) Chlamydophila pneumoniae AR39 963125 NP_445326.1 CDS xseA NC_002179.2 851612 853276 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 851612..853276 Chlamydophila pneumoniae AR39 963738 NP_445327.1 CDS xseB NC_002179.2 853280 853507 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 853280..853507 Chlamydophila pneumoniae AR39 963721 NP_445328.1 CDS CP0789 NC_002179.2 853512 853769 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 853512..853769 Chlamydophila pneumoniae AR39 963122 NP_445329.1 CDS CP0790 NC_002179.2 853774 855708 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 853774..855708 Chlamydophila pneumoniae AR39 963116 NP_445330.1 CDS ksgA NC_002179.2 855751 856584 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(855751..856584) Chlamydophila pneumoniae AR39 963117 NP_445331.1 CDS CP0792 NC_002179.2 856593 857684 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(856593..857684) Chlamydophila pneumoniae AR39 963120 NP_445332.1 CDS CP0793 NC_002179.2 857833 859935 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(857833..859935) Chlamydophila pneumoniae AR39 963170 NP_445333.1 CDS CP0794 NC_002179.2 860201 860932 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(860201..860932) Chlamydophila pneumoniae AR39 963126 NP_445334.1 CDS CP0795 NC_002179.2 860908 861738 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(860908..861738) Chlamydophila pneumoniae AR39 963118 NP_445335.1 CDS CP0796 NC_002179.2 861966 862691 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(861966..862691) Chlamydophila pneumoniae AR39 962714 NP_445336.1 CDS CP0797 NC_002179.2 862706 864274 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(862706..864274) Chlamydophila pneumoniae AR39 963092 NP_445337.1 CDS CP0798 NC_002179.2 864591 864695 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(864591..864695) Chlamydophila pneumoniae AR39 962693 NP_445338.1 CDS CP0799 NC_002179.2 864713 865264 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(864713..865264) Chlamydophila pneumoniae AR39 962698 NP_445339.1 CDS CP0800 NC_002179.2 865245 866000 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(865245..866000) Chlamydophila pneumoniae AR39 962705 NP_445340.1 CDS CP0801 NC_002179.2 866144 866455 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(866144..866455) Chlamydophila pneumoniae AR39 962708 NP_445341.1 CDS dapA NC_002179.2 866616 867491 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(866616..867491) Chlamydophila pneumoniae AR39 962712 NP_445342.1 CDS CP0803 NC_002179.2 867500 868822 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase complement(867500..868822) Chlamydophila pneumoniae AR39 962716 NP_445343.1 CDS CP0804 NC_002179.2 868810 869811 R catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase complement(868810..869811) Chlamydophila pneumoniae AR39 962717 NP_445344.1 CDS CP0805 NC_002179.2 870071 870865 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(870071..870865) Chlamydophila pneumoniae AR39 962718 NP_445345.1 CDS phhA NC_002179.2 870742 871830 D catalyzes the formation of tyrosine, dihydroxyphenylalanine, and 5-hydroxytryptophan from phenylalanine, tyrosine, and tryptophan respectively; aromatic amino acid hydroxylase 870742..871830 Chlamydophila pneumoniae AR39 962721 NP_445346.1 CDS CP0807 NC_002179.2 871821 872519 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 871821..872519 Chlamydophila pneumoniae AR39 962723 NP_445347.1 CDS CP0808 NC_002179.2 872726 873721 D similar to GB:J04423 SP:P12996 PID:145425 PID:490219 GB:U00096; identified by sequence similarity; biotin synthase 872726..873721 Chlamydophila pneumoniae AR39 962741 NP_445348.1 CDS CP0809 NC_002179.2 873700 874848 D similar to GB:AL009126; identified by sequence similarity; 8-amino-7-oxononanoate synthase 873700..874848 Chlamydophila pneumoniae AR39 962746 NP_445349.1 CDS CP0810 NC_002179.2 874827 875486 D similar to SP:P53558 PID:1277028 PID:2293186 GB:AL009126; identified by sequence similarity; dethiobiotin synthase BioD 874827..875486 Chlamydophila pneumoniae AR39 962749 NP_445350.1 CDS CP0811 NC_002179.2 875423 876694 D similar to GB:J04423 SP:P12995 PID:457106 PID:490217 GB:U00096; identified by sequence similarity; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 875423..876694 Chlamydophila pneumoniae AR39 962753 NP_445351.1 CDS CP0812 NC_002179.2 876676 877347 D hypothetical protein; identified by Glimmer2; hypothetical protein 876676..877347 Chlamydophila pneumoniae AR39 962754 NP_445352.1 CDS CP0813 NC_002179.2 877418 878755 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 877418..878755 Chlamydophila pneumoniae AR39 962755 NP_445353.1 CDS CP0814 NC_002179.2 878691 879221 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 878691..879221 Chlamydophila pneumoniae AR39 962759 NP_445354.1 CDS CP0815 NC_002179.2 879218 880297 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 879218..880297 Chlamydophila pneumoniae AR39 962765 NP_445355.1 CDS aroB NC_002179.2 880282 881436 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 880282..881436 Chlamydophila pneumoniae AR39 962770 NP_445356.1 CDS aroDE NC_002179.2 881417 882850 D AroDE; bifunctional enzyme; can convert 3-dehydroquinate to 3-dehydroshkimate and then to shikimate; involved in the synthesis of aromatic amino acids and other metabolites; type I 3-DHQase; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein 881417..882850 Chlamydophila pneumoniae AR39 962771 NP_445357.1 CDS CP0818 NC_002179.2 882900 883688 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 882900..883688 Chlamydophila pneumoniae AR39 962772 NP_445358.1 CDS CP0819 NC_002179.2 883917 885233 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 883917..885233 Chlamydophila pneumoniae AR39 962774 NP_445359.1 CDS CP0820 NC_002179.2 885267 885854 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 885267..885854 Chlamydophila pneumoniae AR39 962776 NP_445360.1 CDS CP0821 NC_002179.2 885865 887322 D amino acid permease; identified by match to PFAM protein family HMM PF00324; amino acid permease 885865..887322 Chlamydophila pneumoniae AR39 962779 NP_445361.1 CDS CP0822 NC_002179.2 887531 888577 D oxidoreductase, DadA family; identified by match to PFAM protein family HMM PF01266; DadA family oxidoreductase 887531..888577 Chlamydophila pneumoniae AR39 962797 NP_445362.1 CDS CP0823 NC_002179.2 888570 889391 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(888570..889391) Chlamydophila pneumoniae AR39 962798 NP_445363.1 CDS CP0824 NC_002179.2 889415 890401 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(889415..890401) Chlamydophila pneumoniae AR39 962804 NP_445364.1 CDS CP0825 NC_002179.2 890659 892239 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(890659..892239) Chlamydophila pneumoniae AR39 962818 NP_445365.1 CDS CP0826 NC_002179.2 892274 892417 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(892274..892417) Chlamydophila pneumoniae AR39 962820 NP_445366.1 CDS pgi NC_002179.2 892532 894112 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(892532..894112) Chlamydophila pneumoniae AR39 962825 NP_445367.1 CDS xerD NC_002179.2 894178 895083 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 894178..895083 Chlamydophila pneumoniae AR39 962829 NP_445368.1 CDS CP0829 NC_002179.2 895080 895379 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(895080..895379) Chlamydophila pneumoniae AR39 962833 NP_445369.1 CDS CP0830 NC_002179.2 895628 895744 D hypothetical protein; identified by Glimmer2; hypothetical protein 895628..895744 Chlamydophila pneumoniae AR39 962847 NP_445370.1 CDS CP0831 NC_002179.2 895741 897201 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 895741..897201 Chlamydophila pneumoniae AR39 962849 NP_445371.1 CDS CP0832 NC_002179.2 897201 897719 D similar to GB:M26405 SP:P21207 PID:155451; identified by sequence similarity; type III secretion chaperone 897201..897719 Chlamydophila pneumoniae AR39 962850 NP_445372.1 CDS CP0833 NC_002179.2 897735 899267 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 897735..899267 Chlamydophila pneumoniae AR39 962860 NP_445373.1 CDS CP0834 NC_002179.2 899286 900779 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 899286..900779 Chlamydophila pneumoniae AR39 962934 NP_445374.1 CDS CP0835 NC_002179.2 900782 901441 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(900782..901441) Chlamydophila pneumoniae AR39 962963 NP_445375.1 CDS ispH NC_002179.2 901476 902408 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(901476..902408) Chlamydophila pneumoniae AR39 963021 NP_445376.1 CDS CP0837 NC_002179.2 902513 904372 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(902513..904372) Chlamydophila pneumoniae AR39 963028 NP_445377.1 CDS CP0838 NC_002179.2 904518 905786 R similar to GP:3123728; identified by sequence similarity; hypothetical protein complement(904518..905786) Chlamydophila pneumoniae AR39 963042 NP_445378.1 CDS CP0839 NC_002179.2 905988 907685 D sulfate transporter family protein; identified by match to PFAM protein family HMM PF00916; sulfate transporter family protein 905988..907685 Chlamydophila pneumoniae AR39 963043 NP_445379.1 CDS fumC NC_002179.2 907787 909169 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(907787..909169) Chlamydophila pneumoniae AR39 963045 NP_445380.1 CDS CP0841 NC_002179.2 909221 910996 D similar to GB:AE001273; identified by sequence similarity; ABC transporter permease 909221..910996 Chlamydophila pneumoniae AR39 963051 NP_445381.1 CDS CP0843 NC_002179.2 911742 912350 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 911742..912350 Chlamydophila pneumoniae AR39 963072 NP_445382.2 CDS CP0844 NC_002179.2 912356 913231 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 912356..913231 Chlamydophila pneumoniae AR39 963127 NP_445383.1 CDS CP0845 NC_002179.2 913188 914474 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(913188..914474) Chlamydophila pneumoniae AR39 963154 NP_445384.1 CDS CP0846 NC_002179.2 914504 914689 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(914504..914689) Chlamydophila pneumoniae AR39 963155 NP_445385.1 CDS CP0847 NC_002179.2 914942 915427 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 914942..915427 Chlamydophila pneumoniae AR39 963179 NP_445386.1 CDS CP0848 NC_002179.2 915481 916002 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 915481..916002 Chlamydophila pneumoniae AR39 963181 NP_445387.1 CDS CP0849 NC_002179.2 916017 916538 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 916017..916538 Chlamydophila pneumoniae AR39 963185 NP_445388.1 CDS CP0850 NC_002179.2 916618 917325 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 916618..917325 Chlamydophila pneumoniae AR39 963202 NP_445389.1 CDS CP0851 NC_002179.2 917322 917552 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(917322..917552) Chlamydophila pneumoniae AR39 963269 NP_445390.1 CDS CP0852 NC_002179.2 917542 918009 R cytidine/deoxycytidylate deaminase family protein; identified by match to PFAM protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein complement(917542..918009) Chlamydophila pneumoniae AR39 963271 NP_445391.1 CDS CP0853 NC_002179.2 918114 918245 D hypothetical protein; identified by Glimmer2; hypothetical protein 918114..918245 Chlamydophila pneumoniae AR39 963285 NP_445392.1 CDS rpsO NC_002179.2 918257 918526 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 918257..918526 Chlamydophila pneumoniae AR39 963293 NP_445393.1 CDS CP0855 NC_002179.2 918567 920651 D similar to GB:J02638 SP:P05055 GB:M14425 GB:X00761 PID:147749; identified by sequence similarity; polynucleotide phosphorylase/polyadenylase 918567..920651 Chlamydophila pneumoniae AR39 963295 NP_445394.1 CDS CP0856 NC_002179.2 920723 920815 D hypothetical protein; identified by Glimmer2; hypothetical protein 920723..920815 Chlamydophila pneumoniae AR39 963296 NP_445395.1 CDS CP0857 NC_002179.2 920827 923559 R similar to GB:M83138 SP:P28691 GB:U01376 PID:146028 PID:606116; identified by sequence similarity; cell division protein FtsH complement(920827..923559) Chlamydophila pneumoniae AR39 963299 NP_445396.1 CDS CP0858 NC_002179.2 923747 924706 R similar to GB:U00096 PID:1552765 PID:1786386 PID:971394; identified by sequence similarity; MesJ/Ycf62 family protein complement(923747..924706) Chlamydophila pneumoniae AR39 963302 NP_445397.1 CDS CP0859 NC_002179.2 924825 925898 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 924825..925898 Chlamydophila pneumoniae AR39 963303 NP_445398.1 CDS CP0860 NC_002179.2 925902 927002 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 925902..927002 Chlamydophila pneumoniae AR39 963306 NP_445399.1 CDS CP0861 NC_002179.2 926971 929016 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(926971..929016) Chlamydophila pneumoniae AR39 963307 NP_445400.1 CDS pheS NC_002179.2 929381 930400 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(929381..930400) Chlamydophila pneumoniae AR39 963308 NP_445401.1 CDS rplT NC_002179.2 930415 930780 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(930415..930780) Chlamydophila pneumoniae AR39 963309 NP_445402.1 CDS rpmI NC_002179.2 930799 930993 R similar to GB:M76589 SP:P49240 PID:868029; identified by sequence similarity; 50S ribosomal protein L35 complement(930799..930993) Chlamydophila pneumoniae AR39 963311 NP_445403.1 CDS infC NC_002179.2 930971 931531 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(930971..931531) Chlamydophila pneumoniae AR39 963314 NP_445404.1 CDS nusB NC_002179.2 931911 932402 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 931911..932402 Chlamydophila pneumoniae AR39 963315 NP_445405.1 CDS murB NC_002179.2 932429 933343 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 932429..933343 Chlamydophila pneumoniae AR39 963318 NP_445406.1 CDS CP0868 NC_002179.2 933297 933899 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(933297..933899) Chlamydophila pneumoniae AR39 963319 NP_445407.1 CDS trmB NC_002179.2 934017 934691 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(934017..934691) Chlamydophila pneumoniae AR39 963320 NP_445408.1 CDS CP0870 NC_002179.2 934688 934816 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(934688..934816) Chlamydophila pneumoniae AR39 963322 NP_445409.1 CDS CP0871 NC_002179.2 934841 935881 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta complement(934841..935881) Chlamydophila pneumoniae AR39 963323 NP_445410.1 CDS CP0872 NC_002179.2 935902 939036 R catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(935902..939036) Chlamydophila pneumoniae AR39 963324 NP_445411.1 CDS CP0873 NC_002179.2 939415 940212 D similar to GB:AE000511 SP:Q48269 PID:1477770 PID:2199520 PID:2253274; identified by sequence similarity; CDP-diacylglycerol--serine O-phosphatidyltransferase 939415..940212 Chlamydophila pneumoniae AR39 963325 NP_445412.1 CDS CP0874 NC_002179.2 940221 941456 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 940221..941456 Chlamydophila pneumoniae AR39 963327 NP_445413.1 CDS CP0875 NC_002179.2 941460 944384 R similar to GP:3779244; identified by sequence similarity; insulinase family metalloprotease complement(941460..944384) Chlamydophila pneumoniae AR39 963328 NP_445414.1 CDS CP0876 NC_002179.2 944433 945914 D peptidase, M20/M25/M40 family; identified by match to PFAM protein family HMM PF01546; M20/M25/M40 family peptidase 944433..945914 Chlamydophila pneumoniae AR39 963329 NP_445415.1 CDS CP0877 NC_002179.2 945969 947435 R similar to GB:M36536 SP:P09376 GB:M29955 GB:X12457 PID:146414; identified by sequence similarity; serine protease complement(945969..947435) Chlamydophila pneumoniae AR39 963330 NP_445416.1 CDS CP0878 NC_002179.2 947719 948750 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(947719..948750) Chlamydophila pneumoniae AR39 963331 NP_445417.1 CDS CP0879 NC_002179.2 949010 950041 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(949010..950041) Chlamydophila pneumoniae AR39 963332 NP_445418.1 CDS CP0880 NC_002179.2 950227 951330 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(950227..951330) Chlamydophila pneumoniae AR39 963333 NP_445419.1 CDS CP0881 NC_002179.2 951408 951545 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(951408..951545) Chlamydophila pneumoniae AR39 963334 NP_445420.1 CDS CP0882 NC_002179.2 951775 952269 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(951775..952269) Chlamydophila pneumoniae AR39 963336 NP_445421.1 CDS CP0883 NC_002179.2 952378 952512 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(952378..952512) Chlamydophila pneumoniae AR39 963337 NP_445422.1 CDS CP0884 NC_002179.2 952807 952941 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(952807..952941) Chlamydophila pneumoniae AR39 963338 NP_445423.1 CDS CP0885 NC_002179.2 952990 953871 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(952990..953871) Chlamydophila pneumoniae AR39 963339 NP_445424.1 CDS sucC NC_002179.2 953885 955045 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(953885..955045) Chlamydophila pneumoniae AR39 963340 NP_445425.1 CDS CP0887 NC_002179.2 955116 955988 D similar to SP:P10121 GB:U00039 GB:X04398 PID:41498 PID:466600; identified by sequence similarity; signal recognition particle protein FtsY 955116..955988 Chlamydophila pneumoniae AR39 963341 NP_445426.1 CDS CP0888 NC_002179.2 955997 956713 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(955997..956713) Chlamydophila pneumoniae AR39 963343 NP_445427.1 CDS CP0889 NC_002179.2 956764 957954 R similar to GB:M23240 SP:P18199 PID:148089 GB:U00096 PID:1736569; identified by sequence similarity; Mtr/TnaB/TyrO permease family protein complement(956764..957954) Chlamydophila pneumoniae AR39 963345 NP_445428.1 CDS CP0890 NC_002179.2 958042 958362 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(958042..958362) Chlamydophila pneumoniae AR39 963346 NP_445429.1 CDS CP0891 NC_002179.2 958413 959603 R similar to GB:M23240 SP:P18199 PID:148089 GB:U00096 PID:1736569; identified by sequence similarity; Mtr/TnaB/TyrO permease family protein complement(958413..959603) Chlamydophila pneumoniae AR39 963347 NP_445430.1 CDS CP0892 NC_002179.2 959691 961520 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(959691..961520) Chlamydophila pneumoniae AR39 963348 NP_445431.1 CDS glmM NC_002179.2 961527 962903 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(961527..962903) Chlamydophila pneumoniae AR39 963349 NP_445432.1 CDS CP0894 NC_002179.2 963378 964670 D similar to SP:P13685 GB:D26562 GB:M20574 GB:S48039 PID:147117; identified by sequence similarity; poly(A) polymerase family protein 963378..964670 Chlamydophila pneumoniae AR39 963351 NP_445433.1 CDS lpxB NC_002179.2 964679 966493 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate; lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 964679..966493 Chlamydophila pneumoniae AR39 963352 NP_445434.1 CDS CP0896 NC_002179.2 966657 968117 D hypothetical protein; identified by Glimmer2; hypothetical protein 966657..968117 Chlamydophila pneumoniae AR39 963353 NP_445435.1 CDS CP0897 NC_002179.2 968188 973017 R similar to GP:4377287; identified by sequence similarity; polymorphic membrane protein D family protein complement(968188..973017) Chlamydophila pneumoniae AR39 963354 NP_445436.1 CDS CP0898 NC_002179.2 973137 974099 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(973137..974099) Chlamydophila pneumoniae AR39 963355 NP_445437.1 CDS rpmF NC_002179.2 974115 974297 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(974115..974297) Chlamydophila pneumoniae AR39 963356 NP_445438.1 CDS CP0900 NC_002179.2 974310 974651 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(974310..974651) Chlamydophila pneumoniae AR39 963357 NP_445439.1 CDS CP0901 NC_002179.2 975072 976619 D similar to SP:P44443; identified by sequence similarity; ribonuclease G 975072..976619 Chlamydophila pneumoniae AR39 963358 NP_445440.1 CDS CP0902 NC_002179.2 976630 977625 D similar to PID:167519; identified by sequence similarity; glycerol-3-phosphate acyltransferase 976630..977625 Chlamydophila pneumoniae AR39 963359 NP_445441.1 CDS CP0903 NC_002179.2 977627 980455 D similar to GP:18455; identified by sequence similarity; insulinase family metalloprotease 977627..980455 Chlamydophila pneumoniae AR39 963360 NP_445442.1 CDS CP0904 NC_002179.2 980503 981855 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(980503..981855) Chlamydophila pneumoniae AR39 963362 NP_445443.1 CDS rplI NC_002179.2 983164 983673 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(983164..983673) Chlamydophila pneumoniae AR39 963363 NP_445444.1 CDS rpsR NC_002179.2 983689 983937 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(983689..983937) Chlamydophila pneumoniae AR39 963364 NP_445445.1 CDS rpsF NC_002179.2 983955 984293 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(983955..984293) Chlamydophila pneumoniae AR39 963365 NP_445446.1 CDS CP0909 NC_002179.2 984385 984927 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(984385..984927) Chlamydophila pneumoniae AR39 963366 NP_445447.1 CDS CP0910 NC_002179.2 984929 985486 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(984929..985486) Chlamydophila pneumoniae AR39 963367 NP_445448.1 CDS glgA NC_002179.2 985941 987371 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 985941..987371 Chlamydophila pneumoniae AR39 963368 NP_445449.1 CDS CP0912 NC_002179.2 987353 987973 R similar to GB:M12299 SP:P06978 PID:473749 GB:U00096 PID:1736571; identified by sequence similarity; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(987353..987973) Chlamydophila pneumoniae AR39 963369 NP_445450.1 CDS CP0913 NC_002179.2 988641 991673 D similar to GP:2654226; identified by sequence similarity; glycyl-tRNA synthetase, tetrameric type, alpha/beta subunits 988641..991673 Chlamydophila pneumoniae AR39 963370 NP_445451.1 CDS CP0914 NC_002179.2 991752 992345 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(991752..992345) Chlamydophila pneumoniae AR39 963371 NP_445452.1 CDS CP0915 NC_002179.2 992415 992903 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(992415..992903) Chlamydophila pneumoniae AR39 963375 NP_445453.1 CDS CP0916 NC_002179.2 993049 993171 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(993049..993171) Chlamydophila pneumoniae AR39 963376 NP_445454.1 CDS CP0917 NC_002179.2 993174 993437 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(993174..993437) Chlamydophila pneumoniae AR39 963377 NP_445455.1 CDS CP0918 NC_002179.2 993497 993601 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(993497..993601) Chlamydophila pneumoniae AR39 963378 NP_445456.1 CDS dnaG NC_002179.2 993658 995442 R synthesizes RNA primers at the replication forks; DNA primase complement(993658..995442) Chlamydophila pneumoniae AR39 963379 NP_445457.1 CDS CP0920 NC_002179.2 995914 998400 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 995914..998400 Chlamydophila pneumoniae AR39 963380 NP_445458.1 CDS uvrC NC_002179.2 998403 1000214 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 998403..1000214 Chlamydophila pneumoniae AR39 963381 NP_445459.1 CDS CP0922 NC_002179.2 1000217 1000687 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1000217..1000687) Chlamydophila pneumoniae AR39 963382 NP_445460.1 CDS CP0923 NC_002179.2 1001093 1001569 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1001093..1001569 Chlamydophila pneumoniae AR39 963383 NP_445461.1 CDS rpsN NC_002179.2 1001614 1001919 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(1001614..1001919) Chlamydophila pneumoniae AR39 963386 NP_445462.1 CDS rpmJ NC_002179.2 1001942 1002079 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(1001942..1002079) Chlamydophila pneumoniae AR39 963387 NP_445463.1 CDS rpmH NC_002179.2 1002324 1002461 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 1002324..1002461 Chlamydophila pneumoniae AR39 963119 NP_445464.1 CDS rnpA NC_002179.2 1002473 1002892 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 1002473..1002892 Chlamydophila pneumoniae AR39 963388 NP_445465.1 CDS CP0928 NC_002179.2 1002834 1003880 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1002834..1003880) Chlamydophila pneumoniae AR39 963389 NP_445466.1 CDS CP0929 NC_002179.2 1003942 1004067 D hypothetical protein; identified by Glimmer2; hypothetical protein 1003942..1004067 Chlamydophila pneumoniae AR39 963390 NP_445467.1 CDS CP0930 NC_002179.2 1004064 1004201 D hypothetical protein; identified by Glimmer2; hypothetical protein 1004064..1004201 Chlamydophila pneumoniae AR39 963391 NP_445468.1 CDS cysS NC_002179.2 1004273 1005697 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1004273..1005697 Chlamydophila pneumoniae AR39 963392 NP_445469.1 CDS lysS NC_002179.2 1005694 1007277 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(1005694..1007277) Chlamydophila pneumoniae AR39 963394 NP_445470.1 CDS CP0933 NC_002179.2 1007419 1007559 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1007419..1007559) Chlamydophila pneumoniae AR39 963396 NP_445471.1 CDS CP0934 NC_002179.2 1007684 1007806 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1007684..1007806) Chlamydophila pneumoniae AR39 963398 NP_445472.1 CDS CP0935 NC_002179.2 1008082 1008558 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1008082..1008558) Chlamydophila pneumoniae AR39 963399 NP_445473.1 CDS CP0936 NC_002179.2 1008956 1009093 D hypothetical protein; identified by Glimmer2; hypothetical protein 1008956..1009093 Chlamydophila pneumoniae AR39 963400 NP_445474.1 CDS CP0937 NC_002179.2 1009123 1010232 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1009123..1010232 Chlamydophila pneumoniae AR39 963401 NP_445475.1 CDS CP0938 NC_002179.2 1010434 1011534 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1010434..1011534 Chlamydophila pneumoniae AR39 963402 NP_445476.1 CDS CP0939 NC_002179.2 1011606 1012748 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1011606..1012748 Chlamydophila pneumoniae AR39 963403 NP_445477.1 CDS CP0940 NC_002179.2 1012855 1013355 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1012855..1013355) Chlamydophila pneumoniae AR39 963404 NP_445478.1 CDS CP0941 NC_002179.2 1013515 1014192 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1013515..1014192 Chlamydophila pneumoniae AR39 963405 NP_445479.1 CDS CP0942 NC_002179.2 1014141 1016390 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1014141..1016390 Chlamydophila pneumoniae AR39 963406 NP_445480.1 CDS CP0943 NC_002179.2 1016319 1017431 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(1016319..1017431) Chlamydophila pneumoniae AR39 963407 NP_445481.1 CDS CP0944 NC_002179.2 1017485 1019101 R Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; long chain fatty acid--ACP ligase complement(1017485..1019101) Chlamydophila pneumoniae AR39 963408 NP_445482.1 CDS CP0945 NC_002179.2 1019119 1019880 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1019119..1019880) Chlamydophila pneumoniae AR39 963409 NP_445483.1 CDS CP0946 NC_002179.2 1020010 1020987 D similar to GB:U33283 PID:1109672; identified by sequence similarity; 3'(2'),5'-bisphosphate nucleotidase 1020010..1020987 Chlamydophila pneumoniae AR39 963410 NP_445484.1 CDS CP0947 NC_002179.2 1020982 1022037 R Glu/Leu/Phe/Val dehydrogenase family protein; identified by match to PFAM protein family HMM PF00208; Glu/Leu/Phe/Val dehydrogenase family protein complement(1020982..1022037) Chlamydophila pneumoniae AR39 963411 NP_445485.1 CDS CP0948 NC_002179.2 1022192 1022839 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 1022192..1022839 Chlamydophila pneumoniae AR39 963413 NP_445486.1 CDS CP0949 NC_002179.2 1022873 1023325 R similar to GB:U30313 SP:P50583 PID:1050961; identified by sequence similarity; MutT/Nudix family protein complement(1022873..1023325) Chlamydophila pneumoniae AR39 963414 NP_445487.1 CDS CP0950 NC_002179.2 1023328 1024578 R FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase II complement(1023328..1024578) Chlamydophila pneumoniae AR39 963415 NP_445488.1 CDS CP0951 NC_002179.2 1024595 1024954 R iojap-related protein; identified by match to TIGR protein family HMM TIGR00090; iojap-related protein complement(1024595..1024954) Chlamydophila pneumoniae AR39 963416 NP_445489.1 CDS CP0952 NC_002179.2 1025015 1025416 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1025015..1025416) Chlamydophila pneumoniae AR39 963417 NP_445490.1 CDS CP0953 NC_002179.2 1025467 1025655 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1025467..1025655) Chlamydophila pneumoniae AR39 963418 NP_445491.1 CDS CP0954 NC_002179.2 1025652 1027313 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1025652..1027313) Chlamydophila pneumoniae AR39 963419 NP_445492.1 CDS CP0955 NC_002179.2 1027399 1028460 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1027399..1028460 Chlamydophila pneumoniae AR39 963420 NP_445493.1 CDS miaA NC_002179.2 1028435 1029463 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1028435..1029463) Chlamydophila pneumoniae AR39 963421 NP_445494.1 CDS CP0957 NC_002179.2 1029473 1029805 R anti-anti-sigma factor; identified by match to PFAM protein family HMM PF01740; anti-anti-sigma factor complement(1029473..1029805) Chlamydophila pneumoniae AR39 963422 NP_445495.1 CDS CP0958 NC_002179.2 1029880 1030665 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1029880..1030665 Chlamydophila pneumoniae AR39 963423 NP_445496.1 CDS CP0959 NC_002179.2 1030662 1031000 D similar to SP:P36654 GB:X77707 GB:Z36905 PID:535291 PID:536981; identified by sequence similarity; periplasmic divalent cation tolerance protein CutA1 1030662..1031000 Chlamydophila pneumoniae AR39 963424 NP_445497.1 CDS CP0960 NC_002179.2 1031102 1031530 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1031102..1031530 Chlamydophila pneumoniae AR39 963425 NP_445498.1 CDS CP0961 NC_002179.2 1031604 1034033 R catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine and catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase complement(1031604..1034033) Chlamydophila pneumoniae AR39 963426 NP_445499.1 CDS murG NC_002179.2 1034043 1035116 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(1034043..1035116) Chlamydophila pneumoniae AR39 963428 NP_445500.1 CDS CP0963 NC_002179.2 1035022 1036179 R similar to SP:P07373 GB:D14109 GB:M15742 GB:X51419 GB:X64259; identified by sequence similarity; cell division protein FtsW complement(1035022..1036179) Chlamydophila pneumoniae AR39 963429 NP_445501.1 CDS CP0964 NC_002179.2 1036198 1036899 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1036198..1036899) Chlamydophila pneumoniae AR39 963430 NP_445502.1 CDS murD NC_002179.2 1036902 1038155 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(1036902..1038155) Chlamydophila pneumoniae AR39 963431 NP_445503.1 CDS mraY NC_002179.2 1038158 1039207 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1038158..1039207) Chlamydophila pneumoniae AR39 963432 NP_445504.1 CDS CP0967 NC_002179.2 1039224 1040567 R similar to GB:D10483 SP:P11880 PID:216500 PID:40854 PID:42048; identified by sequence similarity; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase complement(1039224..1040567) Chlamydophila pneumoniae AR39 963433 NP_445505.1 CDS CP0968 NC_002179.2 1040982 1042541 D similar to SP:P26821 GB:X62914 PID:40572; identified by sequence similarity; 60 kDa chaperonin 1040982..1042541 Chlamydophila pneumoniae AR39 963434 NP_445506.1 CDS CP0969 NC_002179.2 1042705 1043592 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1042705..1043592 Chlamydophila pneumoniae AR39 963435 NP_445507.1 CDS CP0970 NC_002179.2 1043617 1043838 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1043617..1043838) Chlamydophila pneumoniae AR39 963436 NP_445508.1 CDS CP0971 NC_002179.2 1043882 1044454 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1043882..1044454) Chlamydophila pneumoniae AR39 963438 NP_445509.1 CDS CP0972 NC_002179.2 1044676 1045557 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 1044676..1045557 Chlamydophila pneumoniae AR39 963440 NP_445510.1 CDS CP0973 NC_002179.2 1045551 1047548 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(1045551..1047548) Chlamydophila pneumoniae AR39 963441 NP_445511.1 CDS alaS NC_002179.2 1047781 1050399 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1047781..1050399 Chlamydophila pneumoniae AR39 963442 NP_445512.1 CDS CP0975 NC_002179.2 1050369 1053626 D similar to SP:P30958 GB:U00096 PID:1651547 PID:1651549 PID:1787357; identified by sequence similarity; transcription-repair coupling factor 1050369..1053626 Chlamydophila pneumoniae AR39 963443 NP_445513.1 CDS hemE NC_002179.2 1053637 1054626 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1053637..1054626 Chlamydophila pneumoniae AR39 963444 NP_445514.1 CDS CP0977 NC_002179.2 1054607 1055983 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1054607..1055983 Chlamydophila pneumoniae AR39 963445 NP_445515.1 CDS CP0978 NC_002179.2 1056019 1057326 D catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 1056019..1057326 Chlamydophila pneumoniae AR39 963446 NP_445516.1 CDS CP0979 NC_002179.2 1057282 1059750 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1057282..1059750) Chlamydophila pneumoniae AR39 963447 NP_445517.1 CDS CP0980 NC_002179.2 1060166 1060537 D similar to GB:M60902 SP:Q02281 GB:X57311 PID:144507 PID:40689; identified by sequence similarity; histone H1-like protein HC1 1060166..1060537 Chlamydophila pneumoniae AR39 963448 NP_445518.1 CDS CP0981 NC_002179.2 1060807 1062012 D similar to SP:P55137 PID:1209277 GB:AE001273; identified by sequence similarity; RNA methyltransferase 1060807..1062012 Chlamydophila pneumoniae AR39 963449 NP_445519.1 CDS yajC NC_002179.2 1062083 1062436 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1062083..1062436 Chlamydophila pneumoniae AR39 963450 NP_445520.1 CDS CP0983 NC_002179.2 1062577 1063872 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1062577..1063872 Chlamydophila pneumoniae AR39 963451 NP_445521.1 CDS CP0984 NC_002179.2 1064035 1064931 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1064035..1064931) Chlamydophila pneumoniae AR39 963452 NP_445522.1 CDS CP0985 NC_002179.2 1065045 1065392 D hypothetical protein; identified by Glimmer2; hypothetical protein 1065045..1065392 Chlamydophila pneumoniae AR39 963454 NP_445523.1 CDS CP0986 NC_002179.2 1065230 1065775 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1065230..1065775) Chlamydophila pneumoniae AR39 963455 NP_445524.1 CDS CP0987 NC_002179.2 1066555 1067205 D hypothetical protein; identified by Glimmer2; hypothetical protein 1066555..1067205 Chlamydophila pneumoniae AR39 963456 NP_445525.1 CDS CP0988 NC_002179.2 1069264 1069422 D hypothetical protein; identified by Glimmer2; hypothetical protein 1069264..1069422 Chlamydophila pneumoniae AR39 963457 NP_445526.1 CDS CP0989 NC_002179.2 1071581 1074001 D similar to SP:P46889 PID:1004225 GB:U00096 PID:1651412 PID:1651418; identified by sequence similarity; cell division protein FtsK 1071581..1074001 Chlamydophila pneumoniae AR39 963460 NP_445527.1 CDS CP0990 NC_002179.2 1074003 1074800 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1074003..1074800 Chlamydophila pneumoniae AR39 963461 NP_445528.1 CDS CP0991 NC_002179.2 1074788 1075453 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1074788..1075453 Chlamydophila pneumoniae AR39 963462 NP_445529.1 CDS CP0992 NC_002179.2 1075457 1075909 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1075457..1075909) Chlamydophila pneumoniae AR39 963463 NP_445530.1 CDS CP0993 NC_002179.2 1075922 1077298 R sodium/alanine symporter family protein; identified by match to PFAM protein family HMM PF01235; sodium/alanine symporter family protein complement(1075922..1077298) Chlamydophila pneumoniae AR39 963464 NP_445531.1 CDS CP0994 NC_002179.2 1077417 1078070 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1077417..1078070) Chlamydophila pneumoniae AR39 963465 NP_445532.1 CDS CP0995 NC_002179.2 1078335 1079696 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1078335..1079696 Chlamydophila pneumoniae AR39 963466 NP_445533.1 CDS ribH NC_002179.2 1079745 1080209 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1079745..1080209) Chlamydophila pneumoniae AR39 963468 NP_445534.1 CDS CP0997 NC_002179.2 1080223 1081479 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein complement(1080223..1081479) Chlamydophila pneumoniae AR39 963470 NP_445535.1 CDS CP0998 NC_002179.2 1081540 1082670 R similar to GB:L09228 SP:P17618 GB:X51510 PID:40085 PID:410125; identified by sequence similarity; riboflavin-specific deaminase complement(1081540..1082670) Chlamydophila pneumoniae AR39 963471 NP_445536.1 CDS CP0999 NC_002179.2 1082714 1083997 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1082714..1083997 Chlamydophila pneumoniae AR39 963472 NP_445537.1 CDS CP1000 NC_002179.2 1084041 1084787 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1084041..1084787 Chlamydophila pneumoniae AR39 963473 NP_445538.1 CDS CP1001 NC_002179.2 1084724 1086775 D similar to GB:L28104 PID:495646; identified by sequence similarity; cation transporter E1-E2 family ATPase 1084724..1086775 Chlamydophila pneumoniae AR39 963474 NP_445539.1 CDS CP1002 NC_002179.2 1086772 1087911 R similar to GB:M22857 SP:P15035 PID:147695 GB:U00096 PID:1651261; identified by sequence similarity; cell shape-determining protein MrdB complement(1086772..1087911) Chlamydophila pneumoniae AR39 963475 NP_445540.1 CDS CP1003 NC_002179.2 1087951 1088529 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 1087951..1088529 Chlamydophila pneumoniae AR39 963476 NP_445541.1 CDS CP1004 NC_002179.2 1088497 1089024 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1088497..1089024) Chlamydophila pneumoniae AR39 963477 NP_445542.1 CDS CP1005 NC_002179.2 1089065 1089772 R similar to GB:L09228 SP:P35159 PID:410137 GB:AL009126; identified by sequence similarity; ribosomal large subunit pseudouridine synthase B complement(1089065..1089772) Chlamydophila pneumoniae AR39 963478 NP_445543.1 CDS CP1006 NC_002179.2 1089928 1090614 D catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1089928..1090614 Chlamydophila pneumoniae AR39 963479 NP_445544.1 CDS CP1007 NC_002179.2 1090569 1091723 D similar to SP:P55690 PID:2182702; identified by sequence similarity; nifS protein 1090569..1091723 Chlamydophila pneumoniae AR39 963480 NP_445545.1 CDS CP1008 NC_002179.2 1091720 1092520 D similar to SP:P20628 PID:142038; identified by sequence similarity; nifU protein 1091720..1092520 Chlamydophila pneumoniae AR39 963481 NP_445546.1 CDS CP1009 NC_002179.2 1092812 1093837 D conserved hypothetical protein; identified by Glimmer2; type III secretion system protein 1092812..1093837 Chlamydophila pneumoniae AR39 963482 NP_445547.1 CDS CP1010 NC_002179.2 1093854 1094390 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1093854..1094390 Chlamydophila pneumoniae AR39 963483 NP_445548.1 CDS CP1011 NC_002179.2 1094387 1095688 D involved in type III protein export; type III secretion system ATPase 1094387..1095688 Chlamydophila pneumoniae AR39 963485 NP_445549.1 CDS CP1012 NC_002179.2 1095685 1096053 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1095685..1096053 Chlamydophila pneumoniae AR39 963486 NP_445550.1 CDS CP1013 NC_002179.2 1096065 1097450 D similar to SP:O64765; identified by sequence similarity; UDP-N-acetylglucosamine pyrophosphorylase 1096065..1097450 Chlamydophila pneumoniae AR39 963487 NP_445551.1 CDS gpsA NC_002179.2 1097447 1098451 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1097447..1098451 Chlamydophila pneumoniae AR39 963488 NP_445552.1 CDS CP1015 NC_002179.2 1098605 1099639 D similar to PIR:S16034; identified by sequence similarity; major outer membrane protein 1098605..1099639 Chlamydophila pneumoniae AR39 963489 NP_445553.1 CDS CP1016 NC_002179.2 1099636 1100805 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1099636..1100805) Chlamydophila pneumoniae AR39 963491 NP_445554.1 CDS CP1017 NC_002179.2 1100826 1103126 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1100826..1103126) Chlamydophila pneumoniae AR39 963492 NP_445555.1 CDS CP1018 NC_002179.2 1103244 1105046 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(1103244..1105046) Chlamydophila pneumoniae AR39 963494 NP_445556.1 CDS CP1019 NC_002179.2 1105049 1106149 R similar to GB:M95582 SP:Q01465 GB:M96343 PID:142855 PID:143212; identified by sequence similarity; rod shape-determining protein MreB complement(1105049..1106149) Chlamydophila pneumoniae AR39 963495 NP_445557.1 CDS CP1020 NC_002179.2 1106154 1109654 R helicase, Snf2 family; identified by match to PFAM protein family HMM PF00271; SNF2 family helicase complement(1106154..1109654) Chlamydophila pneumoniae AR39 963497 NP_445558.1 CDS tig NC_002179.2 1109940 1111268 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1109940..1111268 Chlamydophila pneumoniae AR39 963498 NP_445559.1 CDS clpP NC_002179.2 1111447 1112058 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1111447..1112058 Chlamydophila pneumoniae AR39 963499 NP_445560.1 CDS clpX NC_002179.2 1112068 1113333 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding protein ClpX 1112068..1113333 Chlamydophila pneumoniae AR39 963500 NP_445561.1 CDS CP1024 NC_002179.2 1113363 1114595 D similar to SP:P13685 GB:D26562 GB:M20574 GB:S48039 PID:147117; identified by sequence similarity; poly(A) polymerase family protein 1113363..1114595 Chlamydophila pneumoniae AR39 963501 NP_445562.1 CDS engA NC_002179.2 1114712 1116175 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1114712..1116175 Chlamydophila pneumoniae AR39 963502 NP_445563.1 CDS CP1026 NC_002179.2 1116251 1116451 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1116251..1116451 Chlamydophila pneumoniae AR39 963110 NP_445564.1 CDS CP1027 NC_002179.2 1116520 1116705 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1116520..1116705) Chlamydophila pneumoniae AR39 963504 NP_445565.1 CDS secA NC_002179.2 1116799 1119711 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(1116799..1119711) Chlamydophila pneumoniae AR39 963505 NP_445566.1 CDS CP1029 NC_002179.2 1119895 1121220 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1119895..1121220) Chlamydophila pneumoniae AR39 963506 NP_445567.1 CDS CP1030 NC_002179.2 1121280 1122185 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(1121280..1122185) Chlamydophila pneumoniae AR39 963507 NP_445568.1 CDS trmE NC_002179.2 1122336 1123664 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1122336..1123664 Chlamydophila pneumoniae AR39 963508 NP_445569.1 CDS CP1032 NC_002179.2 1123671 1124300 D similar to GB:J02857 SP:P20625 PID:146972 GB:U00096 PID:1742691; identified by sequence similarity; endonuclease III 1123671..1124300 Chlamydophila pneumoniae AR39 963509 NP_445570.1 CDS CP1033 NC_002179.2 1124485 1125723 D similar to PID:732813 SP:P54104; identified by sequence similarity; branched-chain amino acid transport system carrier protein 1124485..1125723 Chlamydophila pneumoniae AR39 963510 NP_445571.1 CDS CP1034 NC_002179.2 1125753 1129400 D similar to GP:3738215; identified by sequence similarity; Snf2/Rad54 family helicase 1125753..1129400 Chlamydophila pneumoniae AR39 963511 NP_445572.1 CDS CP1035 NC_002179.2 1129425 1129889 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1129425..1129889) Chlamydophila pneumoniae AR39 963512 NP_445573.1 CDS CP1036 NC_002179.2 1129945 1130067 D hypothetical protein; identified by Glimmer2; hypothetical protein 1129945..1130067 Chlamydophila pneumoniae AR39 963513 NP_445574.1 CDS CP1037 NC_002179.2 1130313 1131698 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1130313..1131698 Chlamydophila pneumoniae AR39 963515 NP_445575.1 CDS CP1038 NC_002179.2 1131695 1132618 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1131695..1132618 Chlamydophila pneumoniae AR39 963516 NP_445576.1 CDS CP1039 NC_002179.2 1133005 1133175 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1133005..1133175) Chlamydophila pneumoniae AR39 963517 NP_445577.1 CDS CP1040 NC_002179.2 1133394 1133606 D hypothetical protein; identified by Glimmer2; hypothetical protein 1133394..1133606 Chlamydophila pneumoniae AR39 963519 NP_445578.1 CDS CP1041 NC_002179.2 1133480 1133791 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1133480..1133791) Chlamydophila pneumoniae AR39 963520 NP_445579.1 CDS CP1042 NC_002179.2 1134141 1134698 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1134141..1134698) Chlamydophila pneumoniae AR39 963521 NP_445580.1 CDS CP1043 NC_002179.2 1135171 1136178 D similar to PID:1336088; identified by sequence similarity; type III secretion protein SctJ 1135171..1136178 Chlamydophila pneumoniae AR39 963522 NP_445581.1 CDS CP1044 NC_002179.2 1136178 1137011 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1136178..1137011 Chlamydophila pneumoniae AR39 963523 NP_445582.1 CDS CP1045 NC_002179.2 1137132 1137833 D similar to GB:M74011 SP:Q01253 PID:155561 PID:155562 PID:155563; identified by sequence similarity; type III secretion system protein 1137132..1137833 Chlamydophila pneumoniae AR39 963524 NP_445583.1 CDS CP1046 NC_002179.2 1137848 1138768 D similar to GB:L22495 PID:349175; identified by sequence similarity; type III secretion system protein 1137848..1138768 Chlamydophila pneumoniae AR39 963525 NP_445584.1 CDS CP1047 NC_002179.2 1138780 1139067 D type III secretion inner membrane protein SctS; identified by match to PFAM protein family HMM PF01313; type III secretion inner membrane protein SctS 1138780..1139067 Chlamydophila pneumoniae AR39 963527 NP_445585.1 CDS CP1048 NC_002179.2 1139075 1139944 D type III secretion inner membrane protein SctT; identified by match to PFAM protein family HMM PF01311; type III secretion inner membrane protein SctT 1139075..1139944 Chlamydophila pneumoniae AR39 963528 NP_445586.1 CDS CP1049 NC_002179.2 1140210 1140686 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1140210..1140686) Chlamydophila pneumoniae AR39 963529 NP_445587.1 CDS CP1050 NC_002179.2 1140771 1141775 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1140771..1141775) Chlamydophila pneumoniae AR39 963531 NP_445588.1 CDS CP1051 NC_002179.2 1141780 1142304 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1141780..1142304) Chlamydophila pneumoniae AR39 963532 NP_445589.1 CDS CP1052 NC_002179.2 1142307 1142741 R Conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1142307..1142741) Chlamydophila pneumoniae AR39 963533 NP_445590.1 CDS CP1053 NC_002179.2 1142757 1143128 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1142757..1143128) Chlamydophila pneumoniae AR39 963534 NP_445591.1 CDS CP1054 NC_002179.2 1143152 1144327 R similar to SP:Q00513 GB:X62666 PID:45435; identified by sequence similarity; general secretion pathway protein F complement(1143152..1144327) Chlamydophila pneumoniae AR39 963537 NP_445592.1 CDS CP1055 NC_002179.2 1144337 1145827 R similar to SP:Q00512 GB:X62666 PID:45434; identified by sequence similarity; general secretion pathway protein E complement(1144337..1145827) Chlamydophila pneumoniae AR39 963538 NP_445593.1 CDS CP1056 NC_002179.2 1145817 1148081 R similar to SP:Q01565 SP:P31700 GB:X65265 PID:581156; identified by sequence similarity; general secretion pathway protein D complement(1145817..1148081) Chlamydophila pneumoniae AR39 963539 NP_445594.1 CDS CP1057 NC_002179.2 1148082 1149335 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1148082..1149335) Chlamydophila pneumoniae AR39 963540 NP_445595.1 CDS CP1058 NC_002179.2 1149505 1150572 R similar to GP:3372642; identified by sequence similarity; proline dipeptidase complement(1149505..1150572) Chlamydophila pneumoniae AR39 963541 NP_445596.1 CDS mutL NC_002179.2 1150577 1152319 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(1150577..1152319) Chlamydophila pneumoniae AR39 963542 NP_445597.1 CDS CP1060 NC_002179.2 1152542 1153237 D similar to GB:M26405 SP:P21207 PID:155451; identified by sequence similarity; type III secretion chaperone SycD 1152542..1153237 Chlamydophila pneumoniae AR39 963543 NP_445598.1 CDS CP1061 NC_002179.2 1153258 1153620 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1153258..1153620 Chlamydophila pneumoniae AR39 963544 NP_445599.1 CDS CP1062 NC_002179.2 1153657 1155123 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1153657..1155123 Chlamydophila pneumoniae AR39 963545 NP_445600.1 CDS CP1063 NC_002179.2 1155156 1156490 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1155156..1156490 Chlamydophila pneumoniae AR39 963547 NP_445601.1 CDS CP1064 NC_002179.2 1156561 1157478 R membrane protein, ; identified by match to PFAM protein family HMM PF00892; hypothetical protein complement(1156561..1157478) Chlamydophila pneumoniae AR39 963548 NP_445602.1 CDS thrS NC_002179.2 1157672 1159579 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1157672..1159579 Chlamydophila pneumoniae AR39 963549 NP_445603.1 CDS CP1066 NC_002179.2 1159612 1160379 D similar to GB:D26185 SP:P37522 PID:467381 PID:580906 GB:AL009126; identified by sequence similarity; ParA family protein 1159612..1160379 Chlamydophila pneumoniae AR39 963550 NP_445604.1 CDS CP1067 NC_002179.2 1160384 1161136 D similar to SP:P10560 GB:X07547 GB:X54450 GB:X54451 PID:581014; identified by sequence similarity; virulence protein pGP6-D-related protein 1160384..1161136 Chlamydophila pneumoniae AR39 963551 NP_445605.1 CDS CP1068 NC_002179.2 1161140 1161694 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1161140..1161694 Chlamydophila pneumoniae AR39 963552 NP_445606.1 CDS CP1069 NC_002179.2 1161703 1162737 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1161703..1162737 Chlamydophila pneumoniae AR39 963553 NP_445607.1 CDS CP1070 NC_002179.2 1162746 1164719 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1162746..1164719 Chlamydophila pneumoniae AR39 963554 NP_445608.1 CDS eno NC_002179.2 1164911 1166197 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1164911..1166197 Chlamydophila pneumoniae AR39 963555 NP_445609.1 CDS CP1072 NC_002179.2 1166457 1167506 D hypothetical protein; identified by Glimmer2; hypothetical protein 1166457..1167506 Chlamydophila pneumoniae AR39 963556 NP_445610.1 CDS CP1073 NC_002179.2 1167584 1168597 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1167584..1168597) Chlamydophila pneumoniae AR39 963557 NP_445611.1 CDS CP1074 NC_002179.2 1168746 1169843 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1168746..1169843) Chlamydophila pneumoniae AR39 963558 NP_445612.1 CDS CP1075 NC_002179.2 1170100 1172124 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1170100..1172124) Chlamydophila pneumoniae AR39 963560 NP_445613.1 CDS CP1076 NC_002179.2 1172245 1173315 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1172245..1173315) Chlamydophila pneumoniae AR39 963562 NP_445614.1 CDS CP1077 NC_002179.2 1173436 1174269 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1173436..1174269) Chlamydophila pneumoniae AR39 963564 NP_445615.1 CDS CP1078 NC_002179.2 1174422 1174553 R hypothetical protein; identified by Glimmer2; hypothetical protein complement(1174422..1174553) Chlamydophila pneumoniae AR39 963565 NP_445616.1 CDS CP1079 NC_002179.2 1174620 1176527 D similar to SP:P37979; identified by sequence similarity; regulatory protein 1174620..1176527 Chlamydophila pneumoniae AR39 963566 NP_445617.1 CDS CP1080 NC_002179.2 1176524 1178338 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1176524..1178338 Chlamydophila pneumoniae AR39 963567 NP_445618.1 CDS CP1081 NC_002179.2 1178393 1181335 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1178393..1181335 Chlamydophila pneumoniae AR39 963568 NP_445619.1 CDS sdhB NC_002179.2 1181337 1182113 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(1181337..1182113) Chlamydophila pneumoniae AR39 963569 NP_445620.1 CDS sdhA NC_002179.2 1182124 1184004 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(1182124..1184004) Chlamydophila pneumoniae AR39 963570 NP_445621.1 CDS CP1084 NC_002179.2 1184008 1184901 R similar to GB:M13470 SP:P08064 PID:143525 PID:1770051 GB:AL009126; identified by sequence similarity; succinate dehydrogenase, cytochrome b558 subunit complement(1184008..1184901) Chlamydophila pneumoniae AR39 963571 NP_445622.1 CDS CP1085 NC_002179.2 1185039 1185824 R similar to GP:3193220; identified by sequence similarity; mttC protein complement(1185039..1185824) Chlamydophila pneumoniae AR39 963572 NP_445623.1 CDS CP1086 NC_002179.2 1186147 1188291 R similar to SP:P36655 GB:X77707 GB:Z36905 PID:536980 PID:581055; identified by sequence similarity; thiol:disulfide interchange protein DsbD complement(1186147..1188291) Chlamydophila pneumoniae AR39 963573 NP_445624.1 CDS CP1087 NC_002179.2 1188452 1189150 D MotA/TolQ/ExbB proton channel family protein; identified by match to PFAM protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 1188452..1189150 Chlamydophila pneumoniae AR39 963575 NP_445625.1 CDS CP1088 NC_002179.2 1189147 1189554 D similar to GB:M28819 SP:P18784 PID:145869 PID:882534 GB:U00096; identified by sequence similarity; ExbD/TolR family protein 1189147..1189554 Chlamydophila pneumoniae AR39 963576 NP_445626.1 CDS CP1089 NC_002179.2 1189558 1190346 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1189558..1190346 Chlamydophila pneumoniae AR39 963577 NP_445627.1 CDS tolB NC_002179.2 1190378 1191673 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1190378..1191673 Chlamydophila pneumoniae AR39 963578 NP_445628.1 CDS CP1091 NC_002179.2 1191670 1192248 D similar to SP:P07176 PID:41360 PID:42257 GB:U00096 PID:1651333; identified by sequence similarity; peptidoglycan-associated lipoprotein 1191670..1192248 Chlamydophila pneumoniae AR39 963579 NP_445629.1 CDS CP1092 NC_002179.2 1192238 1192855 D similar to SP:P54421 PID:1488662; identified by sequence similarity; endopeptidase lyte precursor 1192238..1192855 Chlamydophila pneumoniae AR39 963580 NP_445630.1 CDS CP1093 NC_002179.2 1192962 1193351 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1192962..1193351 Chlamydophila pneumoniae AR39 963581 NP_445631.1 CDS CP1094 NC_002179.2 1193348 1193974 R antioxidant, AhpC/Tsa family; identified by match to PFAM protein family HMM PF00578; anti-oxidant AhpCTSA family protein complement(1193348..1193974) Chlamydophila pneumoniae AR39 963582 NP_445632.1 CDS groEL NC_002179.2 1194262 1195842 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; molecular chaperone GroEL complement(1194262..1195842) Chlamydophila pneumoniae AR39 963583 NP_445633.1 CDS CP1096 NC_002179.2 1195953 1197197 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1195953..1197197) Chlamydophila pneumoniae AR39 963584 NP_445634.1 CDS CP1097 NC_002179.2 1197412 1198032 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 1197412..1198032 Chlamydophila pneumoniae AR39 963585 NP_445635.1 CDS CP1098 NC_002179.2 1198015 1198248 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1198015..1198248) Chlamydophila pneumoniae AR39 963586 NP_445636.1 CDS CP1099 NC_002179.2 1198245 1198955 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(1198245..1198955) Chlamydophila pneumoniae AR39 963587 NP_445637.1 CDS CP1100 NC_002179.2 1199058 1200977 D similar to GB:M63176 PID:153062 SP:Q53727; identified by sequence similarity; ATP-dependent helicase PcrA 1199058..1200977 Chlamydophila pneumoniae AR39 963588 NP_445638.1 CDS CP1101 NC_002179.2 1200980 1202302 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1200980..1202302 Chlamydophila pneumoniae AR39 963589 NP_445639.1 CDS CP1102 NC_002179.2 1202309 1203103 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1202309..1203103) Chlamydophila pneumoniae AR39 963590 NP_445640.1 CDS CP1103 NC_002179.2 1203710 1206325 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I/SWI domain fusion protein 1203710..1206325 Chlamydophila pneumoniae AR39 963591 NP_445641.1 CDS CP1104 NC_002179.2 1206277 1207284 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1206277..1207284) Chlamydophila pneumoniae AR39 963592 NP_445642.1 CDS CP1105 NC_002179.2 1207263 1207559 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1207263..1207559) Chlamydophila pneumoniae AR39 963593 NP_445643.1 CDS CP1106 NC_002179.2 1207661 1209052 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1207661..1209052 Chlamydophila pneumoniae AR39 963594 NP_445644.1 CDS CP1107 NC_002179.2 1209061 1209645 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1209061..1209645 Chlamydophila pneumoniae AR39 963595 NP_445645.1 CDS CP1108 NC_002179.2 1209636 1210922 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1209636..1210922 Chlamydophila pneumoniae AR39 963596 NP_445646.1 CDS CP1109 NC_002179.2 1210932 1211474 D 5-formyltetrahydrofolate cyclo-ligase, ; identified by match to PFAM protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase 1210932..1211474 Chlamydophila pneumoniae AR39 963598 NP_445647.1 CDS recA NC_002179.2 1211846 1212907 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1211846..1212907 Chlamydophila pneumoniae AR39 963599 NP_445648.1 CDS CP1111 NC_002179.2 1213065 1213739 R similar to SP:P07780 GB:X06452 PID:38743; identified by sequence similarity; coenzyme PQQ synthesis protein c complement(1213065..1213739) Chlamydophila pneumoniae AR39 963600 NP_445649.1 CDS CP1112 NC_002179.2 1213746 1214486 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1213746..1214486) Chlamydophila pneumoniae AR39 963601 NP_445650.1 CDS CP1113 NC_002179.2 1214443 1214955 R similar to GB:D10483 SP:P00379 GB:J01609 GB:V00276 GB:X05108; identified by sequence similarity; dihydrofolate reductase complement(1214443..1214955) Chlamydophila pneumoniae AR39 963603 NP_445651.1 CDS CP1114 NC_002179.2 1214981 1216333 R similar to GB:AE001273; identified by sequence similarity; 2-amino-4-hydroxy-6-hydroxymethyldihydropterin pyrophosphokinase/dihydropteroate synthase complement(1214981..1216333) Chlamydophila pneumoniae AR39 963111 NP_445652.1 CDS CP1115 NC_002179.2 1216306 1216710 R similar to PID:2160684; identified by sequence similarity; DhnA family protein complement(1216306..1216710) Chlamydophila pneumoniae AR39 963604 NP_445653.1 CDS CP1116 NC_002179.2 1216764 1218539 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor complement(1216764..1218539) Chlamydophila pneumoniae AR39 963605 NP_445654.1 CDS CP1117 NC_002179.2 1218641 1219846 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1218641..1219846) Chlamydophila pneumoniae AR39 963606 NP_445655.1 CDS rpsT NC_002179.2 1220107 1220406 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1220107..1220406 Chlamydophila pneumoniae AR39 963607 NP_445656.1 CDS CP1119 NC_002179.2 1220437 1221285 D conserved hypothetical protein; identified by Glimmer2; hypothetical protein 1220437..1221285 Chlamydophila pneumoniae AR39 963608 NP_445657.1 CDS CP1120 NC_002179.2 1221358 1222839 R similar to SP:P04993 GB:X04581 GB:X04582 PID:42683 PID:42691; identified by sequence similarity; exodeoxyribonuclease V, alpha subunit complement(1221358..1222839) Chlamydophila pneumoniae AR39 963610 NP_445658.1 CDS CP1121 NC_002179.2 1223006 1224835 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1223006..1224835) Chlamydophila pneumoniae AR39 963612 NP_445659.1 CDS CP1122 NC_002179.2 1225032 1225739 D transcriptional regulator; identified by match to PFAM protein family HMM PF00486; transcriptional regulator 1225032..1225739 Chlamydophila pneumoniae AR39 963613 NP_445660.1 CDS CP1123 NC_002179.2 1225681 1225848 D hypothetical protein; identified by Glimmer2; hypothetical protein 1225681..1225848 Chlamydophila pneumoniae AR39 963615 NP_445661.1 CDS CP1124 NC_002179.2 1225910 1226440 D similar to SP:P17114 PID:290578 PID:43267 PID:290579 GB:U00096; identified by sequence similarity; UDP-N-acetlyglucosamine pyrophosphorylase GlmU-related enzyme 1225910..1226440 Chlamydophila pneumoniae AR39 963618 NP_445662.1 CDS CP1125 NC_002179.2 1226456 1227325 D similar to PID:1063276; identified by sequence similarity; geranylgeranyl pyrophosphate synthase 1226456..1227325 Chlamydophila pneumoniae AR39 963620 NP_445663.1 CDS CP1126 NC_002179.2 1227873 1229468 R conserved hypothetical protein; identified by Glimmer2; hypothetical protein complement(1227873..1229468) Chlamydophila pneumoniae AR39 963621 NP_445664.1 CDS CP1127 NC_002179.2 1229540 1229704 D hypothetical protein; identified by Glimmer2; hypothetical protein 1229540..1229704 Chlamydophila pneumoniae AR39 963622 NP_445665.1 CDS CP1128 NC_002179.2 1229717 1229833 D hypothetical protein; identified by Glimmer2; hypothetical protein 1229717..1229833 Chlamydophila pneumoniae AR39 963623 CPt01 tRNA tRNA-Ala-1 NC_002179.2 5394 5466 R tRNA-Ala complement(5394..5466) Chlamydophila pneumoniae AR39 963073 CPt02 tRNA tRNA-Arg-3 NC_002179.2 34172 34244 D tRNA-Arg 34172..34244 Chlamydophila pneumoniae AR39 962724 CPt03 tRNA tRNA-Thr-2 NC_002179.2 54805 54877 D tRNA-Thr 54805..54877 Chlamydophila pneumoniae AR39 963067 CPt04 tRNA tRNA-Lys-1 NC_002179.2 56591 56663 R tRNA-Lys complement(56591..56663) Chlamydophila pneumoniae AR39 963066 CPt05 tRNA tRNA-Glu-1 NC_002179.2 56689 56763 R tRNA-Glu complement(56689..56763) Chlamydophila pneumoniae AR39 963065 CPt06 tRNA tRNA-Gly-2 NC_002179.2 59905 59975 R tRNA-Gly complement(59905..59975) Chlamydophila pneumoniae AR39 963064 CPt07 tRNA tRNA-Leu-1 NC_002179.2 102099 102182 R tRNA-Leu complement(102099..102182) Chlamydophila pneumoniae AR39 963095 CPt08 tRNA tRNA-Leu-2 NC_002179.2 125614 125696 D tRNA-Leu 125614..125696 Chlamydophila pneumoniae AR39 963086 CPt09 tRNA tRNA-Ser-1 NC_002179.2 133144 133231 D tRNA-Ser 133144..133231 Chlamydophila pneumoniae AR39 963085 CPt10 tRNA tRNA-Leu-3 NC_002179.2 161326 161407 D tRNA-Leu 161326..161407 Chlamydophila pneumoniae AR39 963080 CPt11 tRNA tRNA-Arg-2 NC_002179.2 164248 164321 R tRNA-Arg complement(164248..164321) Chlamydophila pneumoniae AR39 963084 CPt12 tRNA tRNA-Leu-4 NC_002179.2 169267 169349 R tRNA-Leu complement(169267..169349) Chlamydophila pneumoniae AR39 963075 CPt13 tRNA tRNA-Phe-1 NC_002179.2 210140 210212 D tRNA-Phe 210140..210212 Chlamydophila pneumoniae AR39 963077 CPt14 tRNA tRNA-Ser-2 NC_002179.2 214598 214684 D tRNA-Ser 214598..214684 Chlamydophila pneumoniae AR39 962999 CPt15 tRNA tRNA-Arg-4 NC_002179.2 378983 379056 R tRNA-Arg complement(378983..379056) Chlamydophila pneumoniae AR39 963076 CPt16 tRNA tRNA-Pro-2 NC_002179.2 431275 431349 R tRNA-Pro complement(431275..431349) Chlamydophila pneumoniae AR39 963094 CPt17 tRNA tRNA-Asp-1 NC_002179.2 545059 545132 R tRNA-Asp complement(545059..545132) Chlamydophila pneumoniae AR39 963070 CPt18 tRNA tRNA-Val-1 NC_002179.2 545136 545208 R tRNA-Val complement(545136..545208) Chlamydophila pneumoniae AR39 963074 CPt19 tRNA tRNA-Thr-1 NC_002179.2 547806 547878 D tRNA-Thr 547806..547878 Chlamydophila pneumoniae AR39 963069 CPt20 tRNA tRNA-Tyr-1 NC_002179.2 547884 547966 D tRNA-Tyr 547884..547966 Chlamydophila pneumoniae AR39 963071 CPt21 tRNA tRNA-Ala-2 NC_002179.2 572141 572213 D tRNA-Ala 572141..572213 Chlamydophila pneumoniae AR39 963063 CPt22 tRNA tRNA-Ile-1 NC_002179.2 572218 572291 D tRNA-Ile 572218..572291 Chlamydophila pneumoniae AR39 963843 CPt23 tRNA tRNA-Met-1 NC_002179.2 641811 641884 R tRNA-Met complement(641811..641884) Chlamydophila pneumoniae AR39 963842 CPt24 tRNA tRNA-Met-2 NC_002179.2 641900 641972 R tRNA-Met complement(641900..641972) Chlamydophila pneumoniae AR39 963759 CPt25 tRNA tRNA-Asn-1 NC_002179.2 676812 676883 D tRNA-Asn 676812..676883 Chlamydophila pneumoniae AR39 963753 CPt26 tRNA tRNA-Trp-1 NC_002179.2 750132 750204 R tRNA-Trp complement(750132..750204) Chlamydophila pneumoniae AR39 963061 CPt27 tRNA tRNA-Thr-3 NC_002179.2 751474 751545 R tRNA-Thr complement(751474..751545) Chlamydophila pneumoniae AR39 963060 CPt28 tRNA tRNA-Met-3 NC_002179.2 753680 753752 D tRNA-Met 753680..753752 Chlamydophila pneumoniae AR39 963792 CPt29 tRNA tRNA-Ser-3 NC_002179.2 841403 841489 D tRNA-Ser 841403..841489 Chlamydophila pneumoniae AR39 963841 CPt30 tRNA tRNA-Leu-5 NC_002179.2 895470 895551 R tRNA-Leu complement(895470..895551) Chlamydophila pneumoniae AR39 963056 CPt31 tRNA tRNA-Ser-4 NC_002179.2 929296 929380 R tRNA-Ser complement(929296..929380) Chlamydophila pneumoniae AR39 963708 CPt32 tRNA tRNA-Val-2 NC_002179.2 933953 934026 D tRNA-Val 933953..934026 Chlamydophila pneumoniae AR39 963751 CPt33 tRNA tRNA-Gln-1 NC_002179.2 985739 985810 R tRNA-Gln complement(985739..985810) Chlamydophila pneumoniae AR39 963052 CPt34 tRNA tRNA-Cys-1 NC_002179.2 1040839 1040909 D tRNA-Cys 1040839..1040909 Chlamydophila pneumoniae AR39 963083 CPt35 tRNA tRNA-His-1 NC_002179.2 1071420 1071493 D tRNA-His 1071420..1071493 Chlamydophila pneumoniae AR39 963087 CPt36 tRNA tRNA-Gly-1 NC_002179.2 1109835 1109906 D tRNA-Gly 1109835..1109906 Chlamydophila pneumoniae AR39 963082 CPt37 tRNA tRNA-Arg-1 NC_002179.2 1193970 1194043 R tRNA-Arg complement(1193970..1194043) Chlamydophila pneumoniae AR39 963079 CPt38 tRNA tRNA-Pro-1 NC_002179.2 1227444 1227517 R tRNA-Pro complement(1227444..1227517) Chlamydophila pneumoniae AR39 963081 CPr01 rRNA CPr01 NC_002179.2 1065919 1066050 R 5S ribosomal RNA complement(1065919..1066050) Chlamydophila pneumoniae AR39 962790 CPr02 rRNA CPr02 NC_002179.2 1066159 1069022 R 23S ribosomal RNA complement(1066159..1069022) Chlamydophila pneumoniae AR39 963049 CPr03 rRNA CPr03 NC_002179.2 1069329 1070785 R 16S ribosomal RNA complement(1069329..1070785) Chlamydophila pneumoniae AR39 963078