-- dump date 20120504_142343 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 645463000001 SEQ_END SEQ_END NC_013316.1 4191339 4191339 DR NC_013316.1; contig end 4191339..4191339 Clostridium difficile R20291 YP_003216509.1 CDS rsbW NC_013316.1 9450 9857 D anti-sigma-B factor (serine-protein kinase) 9450..9857 Clostridium difficile R20291 8470447 YP_003216510.1 CDS sigB NC_013316.1 9857 10630 D RNA polymerase sigma-B factor 9857..10630 Clostridium difficile R20291 8470251 YP_003216511.1 CDS CDR20291_0001 NC_013316.1 15853 16362 D small-molecule-binding protein 15853..16362 Clostridium difficile R20291 8469443 YP_003216512.1 CDS CDR20291_0002 NC_013316.1 16374 17255 D mechanosensitive ion channel protein 16374..17255 Clostridium difficile R20291 8466881 YP_003216513.1 CDS serS1 NC_013316.1 17713 18984 D seryl-tRNA synthetase 17713..18984 Clostridium difficile R20291 8466882 YP_003216514.1 CDS CDR20291_0004 NC_013316.1 19304 19759 D cytosine/adenosine deaminase 19304..19759 Clostridium difficile R20291 8470274 YP_003216515.1 CDS dnaH NC_013316.1 20230 21867 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 20230..21867 Clostridium difficile R20291 8466883 YP_003216516.1 CDS CDR20291_0006 NC_013316.1 21926 22276 D hypothetical protein 21926..22276 Clostridium difficile R20291 8469674 YP_003216517.1 CDS recD NC_013316.1 22289 22888 D recombination protein 22289..22888 Clostridium difficile R20291 8466884 YP_003216518.1 CDS CDR20291_0008 NC_013316.1 23321 24526 R glycosyl transferase complement(23321..24526) Clostridium difficile R20291 8470161 YP_003216519.1 CDS CDR20291_0009 NC_013316.1 33930 34343 D hypothetical protein 33930..34343 Clostridium difficile R20291 8469444 YP_003216520.1 CDS pyc NC_013316.1 34652 38083 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 34652..38083 Clostridium difficile R20291 8466886 YP_003216521.1 CDS CDR20291_0011 NC_013316.1 38325 40253 D translation elongation factor 38325..40253 Clostridium difficile R20291 8470132 YP_003216522.1 CDS ctsR NC_013316.1 40706 41170 D transcriptional regulator 40706..41170 Clostridium difficile R20291 8466887 YP_003216523.1 CDS CDR20291_0013 NC_013316.1 41177 41671 D DNA repair protein 41177..41671 Clostridium difficile R20291 8469630 YP_003216524.1 CDS CDR20291_0014 NC_013316.1 41687 42712 D ATP:guanido phosphotransferase 41687..42712 Clostridium difficile R20291 8466888 YP_003216525.1 CDS clpC NC_013316.1 42897 45146 D ATP-dependent Clp protease 42897..45146 Clostridium difficile R20291 8466889 YP_003216526.1 CDS radA NC_013316.1 45326 46699 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 45326..46699 Clostridium difficile R20291 8469592 YP_003216527.1 CDS CDR20291_0017 NC_013316.1 46702 47772 D non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 46702..47772 Clostridium difficile R20291 8470149 YP_003216528.1 CDS CDR20291_0018 NC_013316.1 47861 48955 D hypothetical protein 47861..48955 Clostridium difficile R20291 8466890 YP_003216529.1 CDS CDR20291_0019 NC_013316.1 49084 51261 D hypothetical protein 49084..51261 Clostridium difficile R20291 8466891 YP_003216530.1 CDS CDR20291_0020 NC_013316.1 51447 52292 R AraC family transcriptional regulator complement(51447..52292) Clostridium difficile R20291 8466892 YP_003216531.1 CDS CDR20291_0021 NC_013316.1 52509 53675 D beta-glucosidase 52509..53675 Clostridium difficile R20291 8466893 YP_003216532.1 CDS CDR20291_0022 NC_013316.1 53697 55343 D beta-xylosidase 53697..55343 Clostridium difficile R20291 8466894 YP_003216533.1 CDS CDR20291_0023 NC_013316.1 55440 56813 D xylose transporter 55440..56813 Clostridium difficile R20291 8466895 YP_003216534.1 CDS CDR20291_0024 NC_013316.1 57258 58211 D transcriptional regulator 57258..58211 Clostridium difficile R20291 8466896 YP_003216535.1 CDS acoA NC_013316.1 58243 59211 D acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha 58243..59211 Clostridium difficile R20291 8466897 YP_003216536.1 CDS acoB NC_013316.1 59236 60222 D acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta 59236..60222 Clostridium difficile R20291 8469464 YP_003216537.1 CDS acoC NC_013316.1 60235 61281 D E2 component of acetoin dehydrogenase enzyme system (dihydrolipoamide acetyltransferase) 60235..61281 Clostridium difficile R20291 8469465 YP_003216538.1 CDS acoL NC_013316.1 61448 63178 D E3 component of acetoin dehydrogenase enzyme system (dihydrolipoyl dehydrogenase) 61448..63178 Clostridium difficile R20291 8469466 YP_003216539.1 CDS CDR20291_0029 NC_013316.1 63596 66544 D transcription antiterminator 63596..66544 Clostridium difficile R20291 8469467 YP_003216540.1 CDS CDR20291_0030 NC_013316.1 66522 66986 D PTS system transporter subunit IIA 66522..66986 Clostridium difficile R20291 8466898 YP_003216541.1 CDS CDR20291_0031 NC_013316.1 67099 67401 D PTS system transporter subunit IIB 67099..67401 Clostridium difficile R20291 8466899 YP_003216542.1 CDS CDR20291_0032 NC_013316.1 67463 68827 D PTS system transporter subunit IIC 67463..68827 Clostridium difficile R20291 8466900 YP_003216543.1 CDS CDR20291_0033 NC_013316.1 68862 69335 D hypothetical protein 68862..69335 Clostridium difficile R20291 8466901 YP_003216544.1 CDS CDR20291_0034 NC_013316.1 69507 70157 D sugar-phosphate aldolase 69507..70157 Clostridium difficile R20291 8466902 YP_003216545.1 CDS CDR20291_0035 NC_013316.1 70331 71263 D lipoate-protein ligase 70331..71263 Clostridium difficile R20291 8466903 YP_003216546.1 CDS ispD NC_013316.1 71504 72250 D 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 71504..72250 Clostridium difficile R20291 8466904 YP_003216547.1 CDS ispF NC_013316.1 72247 72732 D 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 72247..72732 Clostridium difficile R20291 8469911 YP_003216548.1 CDS proS NC_013316.1 73099 74814 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 73099..74814 Clostridium difficile R20291 8469913 YP_003216549.1 CDS CDR20291_0039 NC_013316.1 74849 76381 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 74849..76381 Clostridium difficile R20291 8470112 YP_003216550.1 CDS gltX NC_013316.1 76821 78302 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 76821..78302 Clostridium difficile R20291 8466905 YP_003216551.1 CDS cysS NC_013316.1 78817 80220 D cysteinyl-tRNA synthetase 78817..80220 Clostridium difficile R20291 8469821 YP_003216552.1 CDS CDR20291_0042 NC_013316.1 80223 80618 D hypothetical protein 80223..80618 Clostridium difficile R20291 8469639 YP_003216553.1 CDS CDR20291_0043 NC_013316.1 81126 81956 D thymidylate synthase 81126..81956 Clostridium difficile R20291 8466906 YP_003216554.1 CDS CDR20291_0044 NC_013316.1 81969 82463 D dihydrofolate reductase region 81969..82463 Clostridium difficile R20291 8466907 YP_003216555.1 CDS CDR20291_0045 NC_013316.1 82490 83866 D hypothetical protein 82490..83866 Clostridium difficile R20291 8466908 YP_003216556.1 CDS CDR20291_0046 NC_013316.1 84193 84942 D thiamine biosynthesis protein thic 84193..84942 Clostridium difficile R20291 8466909 YP_003216557.1 CDS CDR20291_0047 NC_013316.1 85108 85410 D thymidylate synthase 85108..85410 Clostridium difficile R20291 8466910 YP_003216558.1 CDS CDR20291_0048 NC_013316.1 85414 86160 D tRNA/rRNA methyltransferase 85414..86160 Clostridium difficile R20291 8466911 YP_003216559.1 CDS CDR20291_0049 NC_013316.1 86163 86690 D hypothetical protein 86163..86690 Clostridium difficile R20291 8466912 YP_003216560.1 CDS sigH NC_013316.1 86740 87402 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 86740..87402 Clostridium difficile R20291 8466913 YP_003216561.1 CDS CDR20291_0051 NC_013316.1 87476 88669 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 87476..88669 Clostridium difficile R20291 8470280 YP_003216562.1 CDS rpmG NC_013316.1 88919 89068 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 88919..89068 Clostridium difficile R20291 8466914 YP_003216563.1 CDS secE NC_013316.1 89094 89315 D preprotein translocase SecE subunit 89094..89315 Clostridium difficile R20291 8470220 YP_003216564.1 CDS nusG NC_013316.1 89335 89877 D transcription antitermination protein 89335..89877 Clostridium difficile R20291 8470269 YP_003216565.1 CDS rplK NC_013316.1 89913 90338 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 89913..90338 Clostridium difficile R20291 8470034 YP_003216566.1 CDS rplA NC_013316.1 90408 91106 D 50S ribosomal protein L1 90408..91106 Clostridium difficile R20291 8470201 YP_003216567.1 CDS rplJ NC_013316.1 91329 91835 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 91329..91835 Clostridium difficile R20291 8470193 YP_003216568.1 CDS rplL NC_013316.1 91893 92258 D 50S ribosomal protein L7/L12 91893..92258 Clostridium difficile R20291 8470200 YP_003216569.1 CDS CDR20291_0059 NC_013316.1 92650 93438 D NADP-dependent 7-alpha-hydroxysteroid dehydrogenase 92650..93438 Clostridium difficile R20291 8470202 YP_003216570.1 CDS rpoB NC_013316.1 93909 97625 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 93909..97625 Clostridium difficile R20291 8466915 YP_003216571.1 CDS rpoC NC_013316.1 97667 101152 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 97667..101152 Clostridium difficile R20291 8470224 YP_003216572.1 CDS rpsL NC_013316.1 101438 101863 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 101438..101863 Clostridium difficile R20291 8470225 YP_003216573.1 CDS rpsG NC_013316.1 101986 102456 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 101986..102456 Clostridium difficile R20291 8470239 YP_003216574.1 CDS fusA NC_013316.1 102505 104571 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 102505..104571 Clostridium difficile R20291 8470234 YP_003216575.1 CDS CDR20291_0065 NC_013316.1 104662 105855 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 104662..105855 Clostridium difficile R20291 8469786 YP_003216576.1 CDS rpsJ NC_013316.1 106228 106539 D 30S ribosomal protein S10 106228..106539 Clostridium difficile R20291 8466916 YP_003216577.1 CDS rplC NC_013316.1 106631 107260 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 106631..107260 Clostridium difficile R20291 8470237 YP_003216578.1 CDS rplD NC_013316.1 107260 107913 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 107260..107913 Clostridium difficile R20291 8470195 YP_003216579.1 CDS rplW NC_013316.1 107913 108203 D 50S ribosomal protein L23 107913..108203 Clostridium difficile R20291 8470196 YP_003216580.1 CDS rplB NC_013316.1 108233 109063 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 108233..109063 Clostridium difficile R20291 8470212 YP_003216581.1 CDS rpsS NC_013316.1 109098 109379 D 30S ribosomal protein S19 109098..109379 Clostridium difficile R20291 8470194 YP_003216582.1 CDS rplV NC_013316.1 109411 109746 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 109411..109746 Clostridium difficile R20291 8470246 YP_003216583.1 CDS rpsC NC_013316.1 109769 110584 D 30S ribosomal protein S3 109769..110584 Clostridium difficile R20291 8470211 YP_003216584.1 CDS rplP NC_013316.1 110620 111051 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 110620..111051 Clostridium difficile R20291 8470230 YP_003216585.1 CDS rpmC NC_013316.1 111053 111256 D 50S ribosomal protein L29 111053..111256 Clostridium difficile R20291 8470205 YP_003216586.1 CDS rpsQ NC_013316.1 111280 111534 D 30S ribosomal protein S17 111280..111534 Clostridium difficile R20291 8470216 YP_003216587.1 CDS rplN NC_013316.1 111560 111928 D 50S ribosomal protein L14 111560..111928 Clostridium difficile R20291 8470244 YP_003216588.1 CDS rplX NC_013316.1 111949 112257 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 111949..112257 Clostridium difficile R20291 8470203 YP_003216589.1 CDS rplE NC_013316.1 112287 112829 D 50S ribosomal protein L5 112287..112829 Clostridium difficile R20291 8470213 YP_003216590.1 CDS rpsN NC_013316.1 112847 113032 D 30S ribosomal protein S14 112847..113032 Clostridium difficile R20291 8470197 YP_003216591.1 CDS rpsH NC_013316.1 113065 113463 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 113065..113463 Clostridium difficile R20291 8470241 YP_003216592.1 CDS rplF NC_013316.1 113494 114036 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 113494..114036 Clostridium difficile R20291 8470235 YP_003216593.1 CDS rplR NC_013316.1 114072 114440 D 50S ribosomal protein L18 114072..114440 Clostridium difficile R20291 8470198 YP_003216594.1 CDS rpsE NC_013316.1 114461 114970 D 30S ribosomal protein S5 114461..114970 Clostridium difficile R20291 8470207 YP_003216595.1 CDS rpmD NC_013316.1 114985 115170 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 114985..115170 Clostridium difficile R20291 8470232 YP_003216596.1 CDS rplO NC_013316.1 115203 115646 D 50S ribosomal protein L15 115203..115646 Clostridium difficile R20291 8470217 YP_003216597.1 CDS prlA NC_013316.1 115690 116958 D preprotein translocase SecY subunit 115690..116958 Clostridium difficile R20291 8470204 YP_003216598.1 CDS adk NC_013316.1 116960 117625 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 116960..117625 Clostridium difficile R20291 8470108 YP_003216599.1 CDS map1 NC_013316.1 117626 118372 D methionine aminopeptidase 117626..118372 Clostridium difficile R20291 8469480 YP_003216600.1 CDS CDR20291_0090 NC_013316.1 118385 118663 D ribosomal protein 118385..118663 Clostridium difficile R20291 8469954 YP_003216601.1 CDS infA NC_013316.1 118701 118919 D translation initiation factor IF-1 118701..118919 Clostridium difficile R20291 8466917 YP_003216602.1 CDS rpmJ NC_013316.1 118955 119068 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 118955..119068 Clostridium difficile R20291 8469901 YP_003216603.1 CDS rpsM NC_013316.1 119221 119592 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 119221..119592 Clostridium difficile R20291 8470222 YP_003216604.1 CDS rpsK NC_013316.1 119628 120026 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 119628..120026 Clostridium difficile R20291 8470240 YP_003216605.1 CDS rpsD NC_013316.1 120058 120681 D 30S ribosomal protein S4 120058..120681 Clostridium difficile R20291 8470238 YP_003216606.1 CDS rpoA NC_013316.1 120759 121706 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 120759..121706 Clostridium difficile R20291 8470231 YP_003216607.1 CDS rplQ NC_013316.1 121727 122068 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 121727..122068 Clostridium difficile R20291 8470223 YP_003216608.1 CDS CDR20291_0098 NC_013316.1 122188 123021 D ABC transporter ATP-binding protein 122188..123021 Clostridium difficile R20291 8470206 YP_003216609.1 CDS cbiO NC_013316.1 123054 123875 D with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 123054..123875 Clostridium difficile R20291 8466918 YP_003216610.1 CDS CDR20291_0100 NC_013316.1 123965 124672 D ABC transporter permease 123965..124672 Clostridium difficile R20291 8466919 YP_003216611.1 CDS truA1 NC_013316.1 124704 125435 D tRNA pseudouridine synthase 1 124704..125435 Clostridium difficile R20291 8466920 YP_003216612.1 CDS CDR20291_0102 NC_013316.1 125555 125897 D 50S ribosomal protein L13 (pseudogene) join(125555..125869,125871..125897) Clostridium difficile R20291 8470398 YP_003216613.1 CDS rpsI NC_013316.1 126015 126407 D 30S ribosomal protein S9 126015..126407 Clostridium difficile R20291 8466921 YP_003216614.1 CDS cwlD NC_013316.1 126866 127618 D germination-specific N-acetylmuramoyl-L-alanine amidase 126866..127618 Clostridium difficile R20291 8470236 YP_003216615.1 CDS aspC NC_013316.1 138268 139452 R aspartate aminotransferase complement(138268..139452) Clostridium difficile R20291 8469445 YP_003216616.1 CDS nrdD NC_013316.1 139825 142176 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 139825..142176 Clostridium difficile R20291 8469519 YP_003216617.1 CDS nrdG NC_013316.1 142198 142737 D anaerobic ribonucleoside-triphosphate reductase activating protein 142198..142737 Clostridium difficile R20291 8470018 YP_003216618.1 CDS CDR20291_0108 NC_013316.1 149443 150282 D hypothetical protein 149443..150282 Clostridium difficile R20291 8469446 YP_003216619.1 CDS CDR20291_0109 NC_013316.1 150348 151460 D hypothetical protein 150348..151460 Clostridium difficile R20291 8466922 YP_003216620.1 CDS CDR20291_0110 NC_013316.1 151457 151576 D hypothetical protein 151457..151576 Clostridium difficile R20291 8466923 YP_003216621.1 CDS ptb NC_013316.1 151749 152666 D catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase 151749..152666 Clostridium difficile R20291 8466924 YP_003216622.1 CDS buk NC_013316.1 152688 153767 D catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 152688..153767 Clostridium difficile R20291 8470115 YP_003216623.1 CDS CDR20291_0113 NC_013316.1 153826 154434 D ATP/GTP-binding protein 153826..154434 Clostridium difficile R20291 8469558 YP_003216624.1 CDS CDR20291_0114 NC_013316.1 154477 154692 D ferredoxin 154477..154692 Clostridium difficile R20291 8466925 YP_003216625.1 CDS CDR20291_0115 NC_013316.1 154721 155800 D catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 154721..155800 Clostridium difficile R20291 8466926 YP_003216626.1 CDS CDR20291_0116 NC_013316.1 155800 156552 D subunit of oxidoreductase 155800..156552 Clostridium difficile R20291 8466927 YP_003216627.1 CDS CDR20291_0117 NC_013316.1 156553 157110 D subunit of oxidoreductase 156553..157110 Clostridium difficile R20291 8466928 YP_003216628.1 CDS CDR20291_0118 NC_013316.1 157220 158626 D phosphoglucomutase/phosphomannomutase mutase 157220..158626 Clostridium difficile R20291 8466929 YP_003216629.1 CDS glmS NC_013316.1 158893 160725 D glucosamine--fructose-6-phosphate aminotransferase 158893..160725 Clostridium difficile R20291 8466930 YP_003216630.1 CDS CDR20291_0120 NC_013316.1 161178 162473 D thiosulfate sulfurtransferase 161178..162473 Clostridium difficile R20291 8469811 YP_003216631.1 CDS CDR20291_0121 NC_013316.1 162957 163694 D hypothetical protein 162957..163694 Clostridium difficile R20291 8466931 YP_003216632.1 CDS murA NC_013316.1 163697 164968 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 163697..164968 Clostridium difficile R20291 8466932 YP_003216633.1 CDS spoIIC NC_013316.1 165055 166119 D stage II sporulation protein D 165055..166119 Clostridium difficile R20291 8469994 YP_003216634.1 CDS CDR20291_0124 NC_013316.1 166185 166853 D cell wall endopeptidase 166185..166853 Clostridium difficile R20291 8470310 YP_003216635.1 CDS spoIIID NC_013316.1 166951 167211 D stage III sporulation protein D 166951..167211 Clostridium difficile R20291 8466933 YP_003216636.1 CDS mreB1 NC_013316.1 167408 168427 D rod shape-determining protein Mbl 167408..168427 Clostridium difficile R20291 8470320 YP_003216637.1 CDS fabZ NC_013316.1 168443 168871 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 168443..168871 Clostridium difficile R20291 8469985 YP_003216638.1 CDS CDR20291_0128 NC_013316.1 168982 169500 R hypothetical protein complement(168982..169500) Clostridium difficile R20291 8469714 YP_003216639.1 CDS metE NC_013316.1 169920 171113 D S-adenosylmethionine synthetase 169920..171113 Clostridium difficile R20291 8466934 YP_003216640.1 CDS CDR20291_0130 NC_013316.1 171429 172526 D hypothetical protein 171429..172526 Clostridium difficile R20291 8469959 YP_003216641.1 CDS CDR20291_0131 NC_013316.1 172790 175009 D DNA-binding protein 172790..175009 Clostridium difficile R20291 8466935 YP_003216642.1 CDS CDR20291_0132 NC_013316.1 175012 175794 D phosphoribosyl transferase 175012..175794 Clostridium difficile R20291 8466936 YP_003216643.1 CDS CDR20291_0133 NC_013316.1 176126 178039 D transcription antiterminator 176126..178039 Clostridium difficile R20291 8466937 YP_003216644.1 CDS CDR20291_0134 NC_013316.1 178180 178488 D PTS system transporter subunit IIA 178180..178488 Clostridium difficile R20291 8466938 YP_003216645.1 CDS CDR20291_0135 NC_013316.1 178513 178839 D PTS system transporter subunit IIB 178513..178839 Clostridium difficile R20291 8466939 YP_003216646.1 CDS CDR20291_0136 NC_013316.1 178878 180212 D PTS system transporter subunit IIC 178878..180212 Clostridium difficile R20291 8466940 YP_003216647.1 CDS CDR20291_0137 NC_013316.1 180223 180741 D hypothetical protein 180223..180741 Clostridium difficile R20291 8466941 YP_003216648.1 CDS CDR20291_0138 NC_013316.1 180837 181796 D glycosylasparaginase 180837..181796 Clostridium difficile R20291 8466942 YP_003216649.1 CDS CDR20291_0139 NC_013316.1 181844 182896 D peptidase 181844..182896 Clostridium difficile R20291 8466943 YP_003216650.1 CDS CDR20291_0140 NC_013316.1 182899 183573 D copper homeostasis protein 182899..183573 Clostridium difficile R20291 8466944 YP_003216651.1 CDS CDR20291_0141 NC_013316.1 184126 184677 D RNA-binding protein 184126..184677 Clostridium difficile R20291 8466945 YP_003216652.1 CDS secA1 NC_013316.1 184809 187484 D preprotein translocase SecA subunit 184809..187484 Clostridium difficile R20291 8466946 YP_003216653.1 CDS prfB NC_013316.1 187590 188606 D peptide chain release factor 2 187590..188606 Clostridium difficile R20291 8470267 YP_003216654.1 CDS CDR20291_0144 NC_013316.1 188741 190891 D RNA-binding protein 188741..190891 Clostridium difficile R20291 8470106 YP_003216655.1 CDS CDR20291_0145 NC_013316.1 191039 192205 D amidohydrolase 191039..192205 Clostridium difficile R20291 8466947 YP_003216656.1 CDS CDR20291_0146 NC_013316.1 192507 193112 D riboflavin transporter 192507..193112 Clostridium difficile R20291 8466948 YP_003216657.1 CDS CDR20291_0147 NC_013316.1 193441 194481 D hypothetical protein 193441..194481 Clostridium difficile R20291 8466949 YP_003216658.1 CDS CDR20291_0148 NC_013316.1 194620 195072 D ATP/GTP hydrolase 194620..195072 Clostridium difficile R20291 8466950 YP_003216659.1 CDS CDR20291_0149 NC_013316.1 195087 195788 D glycoprotease 195087..195788 Clostridium difficile R20291 8466951 YP_003216660.1 CDS rimI NC_013316.1 195826 196254 D ribosomal-protein-alanine acetyltransferase 195826..196254 Clostridium difficile R20291 8466952 YP_003216661.1 CDS gcp NC_013316.1 196260 197276 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 196260..197276 Clostridium difficile R20291 8470174 YP_003216662.1 CDS hpdB NC_013316.1 197573 200281 D 4-hydroxyphenylacetate decarboxylase catalytic subunit 197573..200281 Clostridium difficile R20291 8469800 YP_003216663.1 CDS hpdC NC_013316.1 200285 200542 D 4-hydroxyphenylacetate decarboxylase regulatory subunit 200285..200542 Clostridium difficile R20291 8469882 YP_003216664.1 CDS hpdA NC_013316.1 200505 201485 D 4-hydroxyphenylacetate decarboxylase activating subunit 200505..201485 Clostridium difficile R20291 8469883 YP_003216665.1 CDS CDR20291_0155 NC_013316.1 201805 202767 D membrane-associated CAAX amino terminal protease 201805..202767 Clostridium difficile R20291 8469881 YP_003216666.1 CDS CDR20291_0156 NC_013316.1 202866 203846 R hypothetical protein complement(202866..203846) Clostridium difficile R20291 8466953 YP_003216667.1 CDS CDR20291_0157 NC_013316.1 204974 205441 D glyoxalase 204974..205441 Clostridium difficile R20291 8466954 YP_003216668.1 CDS CDR20291_0158 NC_013316.1 206612 207325 D two-component response regulator 206612..207325 Clostridium difficile R20291 8466955 YP_003216669.1 CDS CDR20291_0159 NC_013316.1 207598 209370 D lantibiotic ABC transporter ATP-binding protein 207598..209370 Clostridium difficile R20291 8466956 YP_003216670.1 CDS CDR20291_0160 NC_013316.1 209392 210813 D radical SAM protein 209392..210813 Clostridium difficile R20291 8466957 YP_003216671.1 CDS CDR20291_0161 NC_013316.1 210842 211912 D hypothetical protein 210842..211912 Clostridium difficile R20291 8466958 YP_003216672.1 CDS CDR20291_0162 NC_013316.1 211928 212179 D hypothetical protein 211928..212179 Clostridium difficile R20291 8466959 YP_003216673.1 CDS CDR20291_0163 NC_013316.1 212230 212433 D hypothetical protein 212230..212433 Clostridium difficile R20291 8466960 YP_003216674.1 CDS CDR20291_0164 NC_013316.1 212917 213210 D hypothetical protein 212917..213210 Clostridium difficile R20291 8466961 YP_003216675.1 CDS CDR20291_0165 NC_013316.1 213342 214691 R amino acid transporter complement(213342..214691) Clostridium difficile R20291 8466962 YP_003216676.1 CDS CDR20291_0166 NC_013316.1 214728 215948 R amidohydrolase/peptidase complement(214728..215948) Clostridium difficile R20291 8466963 YP_003216677.1 CDS CDR20291_0167 NC_013316.1 216317 218329 R sigma-54-dependent transcriptional regulator complement(216317..218329) Clostridium difficile R20291 8466964 YP_003216678.1 CDS CDR20291_0168 NC_013316.1 218800 219450 D cyclic nucleotide-binding protein 218800..219450 Clostridium difficile R20291 8466965 YP_003216679.1 CDS CDR20291_0169 NC_013316.1 219590 220966 R drug/sodium antiporter complement(219590..220966) Clostridium difficile R20291 8466966 YP_003216680.1 CDS CDR20291_0170 NC_013316.1 220982 222895 R ABC transporter ATP-binding protein complement(220982..222895) Clostridium difficile R20291 8466967 YP_003216681.1 CDS CDR20291_0171 NC_013316.1 223031 223663 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 223031..223663 Clostridium difficile R20291 8466968 YP_003216682.1 CDS CDR20291_0172 NC_013316.1 223802 224341 D hypothetical protein 223802..224341 Clostridium difficile R20291 8466969 YP_003216683.1 CDS fdxA NC_013316.1 224517 224687 R ferredoxin complement(224517..224687) Clostridium difficile R20291 8466970 YP_003216684.1 CDS CDR20291_0174 NC_013316.1 224972 226039 D lipoprotein 224972..226039 Clostridium difficile R20291 8469723 YP_003216685.1 CDS CDR20291_0175 NC_013316.1 226209 228110 D oxidoreductase, acetyl-CoA synthase subunit 226209..228110 Clostridium difficile R20291 8466971 YP_003216686.1 CDS CDR20291_0176 NC_013316.1 228166 228576 D oxidoreductase, electron transfer subunit 228166..228576 Clostridium difficile R20291 8466972 YP_003216687.1 CDS CDR20291_0177 NC_013316.1 228674 229777 D oxidoreductase, NAD/FAD binding subunit 228674..229777 Clostridium difficile R20291 8466973 YP_003216688.1 CDS CDR20291_0178 NC_013316.1 229916 231103 R cyclopropane-fatty-acyl-phospholipid synthase complement(229916..231103) Clostridium difficile R20291 8466974 YP_003216689.1 CDS CDR20291_0179 NC_013316.1 231373 232200 D ATP-binding protein 231373..232200 Clostridium difficile R20291 8466975 YP_003216690.1 CDS gluD NC_013316.1 232329 233594 D NAD-specific glutamate dehydrogenase 232329..233594 Clostridium difficile R20291 8466976 YP_003216691.1 CDS CDR20291_0181 NC_013316.1 233787 234443 D hypothetical protein 233787..234443 Clostridium difficile R20291 8469822 YP_003216692.1 CDS CDR20291_0182 NC_013316.1 234774 235907 D membrane-associated metalloprotease 234774..235907 Clostridium difficile R20291 8466977 YP_003216693.1 CDS CDR20291_0184 NC_013316.1 236834 237856 D cell wall hydrolase 236834..237856 Clostridium difficile R20291 8466979 YP_003216694.1 CDS pyrB NC_013316.1 238152 239072 D aspartate carbamoyltransferase catalytic chain 238152..239072 Clostridium difficile R20291 8466980 YP_003216695.1 CDS pyrK NC_013316.1 239111 239803 D responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit 239111..239803 Clostridium difficile R20291 8470138 YP_003216696.1 CDS pyrD NC_013316.1 239850 240698 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 239850..240698 Clostridium difficile R20291 8470145 YP_003216697.1 CDS pyrE NC_013316.1 240783 241367 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 240783..241367 Clostridium difficile R20291 8470140 YP_003216698.1 CDS CDR20291_0189 NC_013316.1 241582 242508 D ketopantoate reductase 241582..242508 Clostridium difficile R20291 8470142 YP_003216699.1 CDS CDR20291_0190 NC_013316.1 242560 243450 R LysR family transcriptional regulator complement(242560..243450) Clostridium difficile R20291 8466981 YP_003216700.1 CDS CDR20291_0191 NC_013316.1 243638 244669 D hypothetical protein 243638..244669 Clostridium difficile R20291 8466982 YP_003216701.1 CDS CDR20291_0192 NC_013316.1 244963 245838 D DNA glycosylase 244963..245838 Clostridium difficile R20291 8466983 YP_003216702.1 CDS cls NC_013316.1 245856 247346 D cardiolipin synthetase 245856..247346 Clostridium difficile R20291 8466984 YP_003216703.1 CDS groES NC_013316.1 247539 247823 D 10 kDa chaperonin 247539..247823 Clostridium difficile R20291 8469596 YP_003216704.1 CDS groEL NC_013316.1 247856 249484 D 60 kDa chaperonin 247856..249484 Clostridium difficile R20291 8469845 YP_003216705.1 CDS CDR20291_0196 NC_013316.1 249746 250486 D hypothetical protein 249746..250486 Clostridium difficile R20291 8469844 YP_003216706.1 CDS guaA NC_013316.1 252135 253670 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 252135..253670 Clostridium difficile R20291 8466986 YP_003216707.1 CDS CDR20291_0199 NC_013316.1 254209 255639 D membrane-associated nucleotidase 254209..255639 Clostridium difficile R20291 8469849 YP_003216708.1 CDS CDR20291_0200 NC_013316.1 255787 256662 R hypothetical protein complement(255787..256662) Clostridium difficile R20291 8466987 YP_003216709.1 CDS CDR20291_0201 NC_013316.1 256761 257345 D hypothetical protein 256761..257345 Clostridium difficile R20291 8466988 YP_003216710.1 CDS CDR20291_0202 NC_013316.1 257471 257908 D chromate transporter 257471..257908 Clostridium difficile R20291 8466989 YP_003216711.1 CDS CDR20291_0203 NC_013316.1 258037 258273 R hypothetical protein complement(258037..258273) Clostridium difficile R20291 8466990 YP_003216712.1 CDS CDR20291_0204 NC_013316.1 258583 262011 R DNA repair protein complement(258583..262011) Clostridium difficile R20291 8466991 YP_003216713.1 CDS CDR20291_0205 NC_013316.1 262330 264564 D signaling protein 262330..264564 Clostridium difficile R20291 8466992 YP_003216714.1 CDS CDR20291_0206 NC_013316.1 264820 266850 D transcription antiterminator 264820..266850 Clostridium difficile R20291 8466993 YP_003216715.1 CDS CDR20291_0207 NC_013316.1 266847 267299 D PTS system transporter subunit IIA 266847..267299 Clostridium difficile R20291 8466994 YP_003216716.1 CDS CDR20291_0208 NC_013316.1 267301 268356 D FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; fructose-like permease EIIC subunit 2 267301..268356 Clostridium difficile R20291 8466995 YP_003216717.1 CDS CDR20291_0209 NC_013316.1 268423 268731 D FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; PTS system fructose-like transporter subunit EIIB 268423..268731 Clostridium difficile R20291 8466996 YP_003216718.1 CDS CDR20291_0210 NC_013316.1 268835 270100 D sugar-phosphate kinase 268835..270100 Clostridium difficile R20291 8466997 YP_003216719.1 CDS CDR20291_0211 NC_013316.1 270188 270904 D hydrolase 270188..270904 Clostridium difficile R20291 8466998 YP_003216720.1 CDS CDR20291_0212 NC_013316.1 271099 271392 R spore coat protein complement(271099..271392) Clostridium difficile R20291 8466999 YP_003216721.1 CDS CDR20291_0213 NC_013316.1 271398 271613 R hypothetical protein complement(271398..271613) Clostridium difficile R20291 8467000 YP_003216722.1 CDS CDR20291_0214 NC_013316.1 272158 272670 R nitroreductase complement(272158..272670) Clostridium difficile R20291 8467001 YP_003216723.1 CDS purE NC_013316.1 273120 273596 D phosphoribosylaminoimidazole carboxylase catalytic subunit 273120..273596 Clostridium difficile R20291 8467002 YP_003216724.1 CDS purC NC_013316.1 273602 274300 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 273602..274300 Clostridium difficile R20291 8470125 YP_003216725.1 CDS purF NC_013316.1 274312 275679 D amidophosphoribosyltransferase 274312..275679 Clostridium difficile R20291 8470123 YP_003216726.1 CDS purG NC_013316.1 275673 276749 D phosphoribosylformylglycinamidine cyclo-ligase 275673..276749 Clostridium difficile R20291 8470126 YP_003216727.1 CDS purN NC_013316.1 276743 277336 D phosphoribosylglycinamide formyltransferase 276743..277336 Clostridium difficile R20291 8470127 YP_003216728.1 CDS purH NC_013316.1 277329 278861 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 277329..278861 Clostridium difficile R20291 8470130 YP_003216729.1 CDS purD NC_013316.1 278872 280122 D phosphoribosylamine--glycine ligase 278872..280122 Clostridium difficile R20291 8470128 YP_003216730.1 CDS purL NC_013316.1 280147 283953 D formylglycinamidine ribonucleotide synthetase 280147..283953 Clostridium difficile R20291 8470124 YP_003216731.1 CDS CDR20291_0223 NC_013316.1 284159 285031 D dtdp-4-dehydrorhamnose reductase 284159..285031 Clostridium difficile R20291 8470129 YP_003216732.1 CDS CDR20291_0224 NC_013316.1 285140 286021 D glucose-1-phosphate thymidylyltransferase 285140..286021 Clostridium difficile R20291 8467003 YP_003216733.1 CDS CDR20291_0225 NC_013316.1 286058 286615 D dtdp-4-dehydrorhamnose 3,5-epimerase 286058..286615 Clostridium difficile R20291 8467004 YP_003216734.1 CDS CDR20291_0226 NC_013316.1 286653 287636 D dtdp-glucose 4,6-dehydratase 286653..287636 Clostridium difficile R20291 8467005 YP_003216735.1 CDS CDR20291_0227 NC_013316.1 287612 288343 D transglycosylase 287612..288343 Clostridium difficile R20291 8467006 YP_003216736.1 CDS CDR20291_0228 NC_013316.1 288352 288780 D hypothetical protein 288352..288780 Clostridium difficile R20291 8467007 YP_003216737.1 CDS fliN NC_013316.1 288804 289118 D flagellar motor switch protein 288804..289118 Clostridium difficile R20291 8467008 YP_003216738.1 CDS flgM NC_013316.1 289270 289545 D negative regulator of flagellin synthesis (anti-sigma-d factor) 289270..289545 Clostridium difficile R20291 8469761 YP_003216739.1 CDS CDR20291_0231 NC_013316.1 289550 289966 D flagellar biosynthesis protein 289550..289966 Clostridium difficile R20291 8469745 YP_003216740.1 CDS flgK NC_013316.1 289984 291294 D flagellar hook-associated protein 289984..291294 Clostridium difficile R20291 8467009 YP_003216741.1 CDS flgL NC_013316.1 291313 292245 D flagellar hook-associated protein 291313..292245 Clostridium difficile R20291 8469743 YP_003216742.1 CDS CDR20291_0234 NC_013316.1 292261 292653 D hypothetical protein 292261..292653 Clostridium difficile R20291 8469744 YP_003216743.1 CDS csrA NC_013316.1 292647 292859 D carbon storage regulator 292647..292859 Clostridium difficile R20291 8467010 YP_003216744.1 CDS fliS1 NC_013316.1 292881 293276 D flagellar protein FliS 292881..293276 Clostridium difficile R20291 8469627 YP_003216745.1 CDS fliS2 NC_013316.1 293276 293632 D flagellar protein 293276..293632 Clostridium difficile R20291 8469765 YP_003216746.1 CDS fliD NC_013316.1 293653 295176 D flagellar cap protein 293653..295176 Clostridium difficile R20291 8469766 YP_003216747.1 CDS CDR20291_0239 NC_013316.1 295179 295514 D hypothetical protein 295179..295514 Clostridium difficile R20291 8469751 YP_003216748.1 CDS fliC NC_013316.1 295529 296488 D flagellin subunit 295529..296488 Clostridium difficile R20291 8467011 YP_003216749.1 CDS CDR20291_0241 NC_013316.1 296503 298722 D glycosyltransferase 296503..298722 Clostridium difficile R20291 8469750 YP_003216750.1 CDS CDR20291_0242 NC_013316.1 298746 300623 D glycosyl transferase group 2 family protein 298746..300623 Clostridium difficile R20291 8467012 YP_003216751.1 CDS CDR20291_0243 NC_013316.1 300616 302730 D glycosyl transferase group 2 family protein 300616..302730 Clostridium difficile R20291 8467013 YP_003216752.1 CDS CDR20291_0244 NC_013316.1 302739 303734 D hypothetical protein 302739..303734 Clostridium difficile R20291 8467014 YP_003216753.1 CDS CDR20291_0245 NC_013316.1 303826 305058 D carbamoyl-phosphate-synthetase 303826..305058 Clostridium difficile R20291 8467015 YP_003216754.1 CDS CDR20291_0246 NC_013316.1 305069 306022 D ornithine cyclodeaminase 305069..306022 Clostridium difficile R20291 8467016 YP_003216755.1 CDS CDR20291_0247 NC_013316.1 306601 307701 D hypothetical protein 306601..307701 Clostridium difficile R20291 8467017 YP_003216756.1 CDS flgB NC_013316.1 308507 308824 D flagellar basal-body rod protein 308507..308824 Clostridium difficile R20291 8467018 YP_003216757.1 CDS flgC NC_013316.1 308850 309236 D flagellar basal-body rod protein 308850..309236 Clostridium difficile R20291 8469738 YP_003216758.1 CDS fliE NC_013316.1 309246 309563 D forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 309246..309563 Clostridium difficile R20291 8469739 YP_003216759.1 CDS fliF NC_013316.1 309588 311138 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 309588..311138 Clostridium difficile R20291 8469752 YP_003216760.1 CDS fliG NC_013316.1 311151 312221 D flagellar motor switch protein 311151..312221 Clostridium difficile R20291 8469753 YP_003216761.1 CDS fliH NC_013316.1 312202 312945 D flagellar assembly protein 312202..312945 Clostridium difficile R20291 8469754 YP_003216762.1 CDS fliI NC_013316.1 312949 314268 D flagellum-specific ATP synthase 312949..314268 Clostridium difficile R20291 8469755 YP_003216763.1 CDS fliJ NC_013316.1 314300 314746 D flagellar protein 314300..314746 Clostridium difficile R20291 8469756 YP_003216764.1 CDS fliK NC_013316.1 314774 315979 D flagellar hook-length control protein 314774..315979 Clostridium difficile R20291 8469757 YP_003216765.1 CDS flgD NC_013316.1 315997 316605 D basal-body rod modification protein 315997..316605 Clostridium difficile R20291 8469758 YP_003216766.1 CDS flgE NC_013316.1 316632 317615 D flagellar hook protein 316632..317615 Clostridium difficile R20291 8469740 YP_003216767.1 CDS CDR20291_0259 NC_013316.1 317628 317831 D flagellar protein 317628..317831 Clostridium difficile R20291 8469741 YP_003216768.1 CDS motA NC_013316.1 317831 318649 D chemotaxis protein 317831..318649 Clostridium difficile R20291 8467019 YP_003216769.1 CDS motB NC_013316.1 318639 319334 D chemotaxis protein 318639..319334 Clostridium difficile R20291 8469980 YP_003216770.1 CDS fliL NC_013316.1 319346 319789 D flagellar basal body-associated protein 319346..319789 Clostridium difficile R20291 8469981 YP_003216771.1 CDS CDR20291_0263 NC_013316.1 319804 320178 D flagellar protein 319804..320178 Clostridium difficile R20291 8469759 YP_003216772.1 CDS fliP NC_013316.1 320179 320844 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 320179..320844 Clostridium difficile R20291 8467020 YP_003216773.1 CDS fliQ NC_013316.1 320857 321126 D flagellar export protein 320857..321126 Clostridium difficile R20291 8469763 YP_003216774.1 CDS flhB NC_013316.1 321138 322952 D FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined; bifunctional flagellar biosynthesis protein FliR/FlhB 321138..322952 Clostridium difficile R20291 8469764 YP_003216775.1 CDS flhA NC_013316.1 322961 325036 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 322961..325036 Clostridium difficile R20291 8469747 YP_003216776.1 CDS flhF NC_013316.1 325014 326027 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 325014..326027 Clostridium difficile R20291 8469746 YP_003216777.1 CDS fleN NC_013316.1 326024 326902 D flagellar number regulator 326024..326902 Clostridium difficile R20291 8469748 YP_003216778.1 CDS fliA NC_013316.1 326916 327617 D RNA polymerase sigma factor for flagellar operon 326916..327617 Clostridium difficile R20291 8469737 YP_003216779.1 CDS CDR20291_0271 NC_013316.1 327633 328055 D hypothetical protein 327633..328055 Clostridium difficile R20291 8469749 YP_003216780.1 CDS flgG NC_013316.1 328266 329039 D makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG 328266..329039 Clostridium difficile R20291 8467021 YP_003216781.1 CDS flgG NC_013316.1 329060 329821 D makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG 329060..329821 Clostridium difficile R20291 8469742 YP_003216782.1 CDS fliM NC_013316.1 329844 330725 D flagellar motor switch protein 329844..330725 Clostridium difficile R20291 8467022 YP_003216783.1 CDS fliN NC_013316.1 330728 331102 D flagellar motor switch protein 330728..331102 Clostridium difficile R20291 8469760 YP_003216784.1 CDS CDR20291_0276 NC_013316.1 331134 332537 D hypothetical protein 331134..332537 Clostridium difficile R20291 8469762 YP_003216785.1 CDS htpG NC_013316.1 332653 334590 D molecular chaperone; heat shock protein 90 332653..334590 Clostridium difficile R20291 8467023 YP_003216786.1 CDS dhaT NC_013316.1 334978 336108 D 1,3-propanediol dehydrogenase 334978..336108 Clostridium difficile R20291 8469890 YP_003216787.1 CDS spl NC_013316.1 336335 337357 D spore photoproduct lyase 336335..337357 Clostridium difficile R20291 8469662 YP_003216788.1 CDS CDR20291_0280 NC_013316.1 337539 338450 D AraC family transcriptional regulator 337539..338450 Clostridium difficile R20291 8470303 YP_003216789.1 CDS CDR20291_0281 NC_013316.1 338465 338881 D hypothetical protein 338465..338881 Clostridium difficile R20291 8467024 YP_003216790.1 CDS CDR20291_0282 NC_013316.1 338975 339367 R transcriptional regulator complement(338975..339367) Clostridium difficile R20291 8467025 YP_003216791.1 CDS CDR20291_0283 NC_013316.1 339508 339903 D hypothetical protein 339508..339903 Clostridium difficile R20291 8467026 YP_003216792.1 CDS CDR20291_0284 NC_013316.1 340306 340512 D hypothetical protein 340306..340512 Clostridium difficile R20291 8467027 YP_003216793.1 CDS CDR20291_0285 NC_013316.1 340823 341656 R hydrolase complement(340823..341656) Clostridium difficile R20291 8467028 YP_003216794.1 CDS CDR20291_0286 NC_013316.1 341732 344299 D transcription antiterminator 341732..344299 Clostridium difficile R20291 8467029 YP_003216795.1 CDS CDR20291_0287 NC_013316.1 344520 344933 D PTS system transporter subunit IIA 344520..344933 Clostridium difficile R20291 8467030 YP_003216796.1 CDS CDR20291_0288 NC_013316.1 344957 345454 D PTS system transporter subunit IIB 344957..345454 Clostridium difficile R20291 8467031 YP_003216797.1 CDS CDR20291_0289 NC_013316.1 345457 345858 D PTS system, IIa component 345457..345858 Clostridium difficile R20291 8467032 YP_003216798.1 CDS CDR20291_0290 NC_013316.1 345876 346364 D PTS system transporter subunit IIB 345876..346364 Clostridium difficile R20291 8467033 YP_003216799.1 CDS CDR20291_0291 NC_013316.1 346391 347146 D PTS system transporter subunit IIC 346391..347146 Clostridium difficile R20291 8467034 YP_003216800.1 CDS CDR20291_0292 NC_013316.1 347146 348009 D PTS system transporter subunit IID 347146..348009 Clostridium difficile R20291 8467035 YP_003216801.1 CDS CDR20291_0293 NC_013316.1 348056 348535 D hypothetical protein 348056..348535 Clostridium difficile R20291 8467036 YP_003216802.1 CDS CDR20291_0294 NC_013316.1 348600 349907 D peptidase 348600..349907 Clostridium difficile R20291 8467037 YP_003216803.1 CDS CDR20291_0295 NC_013316.1 350870 351964 D DNA-binding protein 350870..351964 Clostridium difficile R20291 8467038 YP_003216804.1 CDS CDR20291_0296 NC_013316.1 352166 353086 D ABC transporter ATP-binding protein 352166..353086 Clostridium difficile R20291 8467039 YP_003216805.1 CDS CDR20291_0297 NC_013316.1 353083 353841 D ABC transporter permease 353083..353841 Clostridium difficile R20291 8467040 YP_003216806.1 CDS CDR20291_0298 NC_013316.1 354224 355297 D iron-sulfur-binding protein 354224..355297 Clostridium difficile R20291 8467041 YP_003216807.1 CDS CDR20291_0299 NC_013316.1 355367 355630 D hypothetical protein 355367..355630 Clostridium difficile R20291 8467042 YP_003216808.1 CDS CDR20291_0300 NC_013316.1 355836 356813 D biotin synthase 355836..356813 Clostridium difficile R20291 8467043 YP_003216809.1 CDS rbsR NC_013316.1 357032 358054 D ribose operon repressor 357032..358054 Clostridium difficile R20291 8467044 YP_003216810.1 CDS rbsK NC_013316.1 358096 358986 D ribokinase 358096..358986 Clostridium difficile R20291 8470159 YP_003216811.1 CDS rbsB NC_013316.1 359034 359996 D D-ribose ABC transporter substrate-binding protein 359034..359996 Clostridium difficile R20291 8470158 YP_003216812.1 CDS rbsA NC_013316.1 360050 361561 D ribose ABC transporter ATP-binding protein 360050..361561 Clostridium difficile R20291 8470156 YP_003216813.1 CDS rbsC NC_013316.1 361545 362543 D ribose ABC transporter permease 361545..362543 Clostridium difficile R20291 8470155 YP_003216814.1 CDS argE NC_013316.1 362727 363989 D acetylornithine deacetylase 362727..363989 Clostridium difficile R20291 8470157 YP_003216815.1 CDS CDR20291_0307 NC_013316.1 364009 364752 D hypothetical protein 364009..364752 Clostridium difficile R20291 8469499 YP_003216816.1 CDS abgB1 NC_013316.1 364925 366310 D aminobenzoyl-glutamate utilization protein 364925..366310 Clostridium difficile R20291 8467045 YP_003216817.1 CDS CDR20291_0309 NC_013316.1 366647 367291 R hypothetical protein complement(366647..367291) Clostridium difficile R20291 8469454 YP_003216818.1 CDS CDR20291_0310 NC_013316.1 367555 368169 D transcriptional regulator 367555..368169 Clostridium difficile R20291 8467046 YP_003216819.1 CDS CDR20291_0311 NC_013316.1 369905 370816 D hypothetical protein 369905..370816 Clostridium difficile R20291 8467047 YP_003216820.1 CDS CDR20291_0312 NC_013316.1 370806 371249 D hypothetical protein 370806..371249 Clostridium difficile R20291 8467048 YP_003216821.1 CDS CDR20291_0313 NC_013316.1 371251 371751 D hypothetical protein 371251..371751 Clostridium difficile R20291 8467049 YP_003216822.1 CDS CDR20291_0314 NC_013316.1 371953 372681 R phosphoserine phosphatase complement(371953..372681) Clostridium difficile R20291 8467050 YP_003216823.1 CDS CDR20291_0315 NC_013316.1 372806 373894 D hypothetical protein 372806..373894 Clostridium difficile R20291 8467051 YP_003216824.1 CDS CDR20291_0316 NC_013316.1 374332 375180 R spore coat assembly asparagine-rich protein complement(374332..375180) Clostridium difficile R20291 8467052 YP_003216825.1 CDS CDR20291_0317 NC_013316.1 375379 375744 D ArsR family transcriptional regulator 375379..375744 Clostridium difficile R20291 8467053 YP_003216826.1 CDS CDR20291_0318 NC_013316.1 375767 378154 D heavy-metal-transporting ATPase 375767..378154 Clostridium difficile R20291 8467054 YP_003216827.1 CDS CDR20291_0319 NC_013316.1 383783 384391 D hypothetical protein 383783..384391 Clostridium difficile R20291 8469447 YP_003216828.1 CDS CDR20291_0320 NC_013316.1 384413 384625 D hypothetical protein 384413..384625 Clostridium difficile R20291 8467056 YP_003216829.1 CDS CDR20291_0321 NC_013316.1 384932 385705 R ABC transporter permease complement(384932..385705) Clostridium difficile R20291 8467057 YP_003216830.1 CDS CDR20291_0322 NC_013316.1 385716 386453 R ABC transporter permease complement(385716..386453) Clostridium difficile R20291 8467058 YP_003216831.1 CDS CDR20291_0323 NC_013316.1 386446 387435 R ABC transporter ATP-binding protein complement(386446..387435) Clostridium difficile R20291 8467059 YP_003216832.1 CDS CDR20291_0324 NC_013316.1 387526 388449 R two-component sensor histidine kinase complement(387526..388449) Clostridium difficile R20291 8467060 YP_003216833.1 CDS CDR20291_0325 NC_013316.1 388451 389185 R two-component response regulator complement(388451..389185) Clostridium difficile R20291 8467061 YP_003216834.1 CDS CDR20291_0326 NC_013316.1 389145 389333 R hypothetical protein complement(389145..389333) Clostridium difficile R20291 8467062 YP_003216835.1 CDS CDR20291_0327 NC_013316.1 389562 390491 D hypothetical protein 389562..390491 Clostridium difficile R20291 8467063 YP_003216836.1 CDS CDR20291_0328 NC_013316.1 390505 392277 D hypothetical protein 390505..392277 Clostridium difficile R20291 8467064 YP_003216837.1 CDS cbiM NC_013316.1 392790 393542 D cobalt transport protein 392790..393542 Clostridium difficile R20291 8467065 YP_003216838.1 CDS cbiN NC_013316.1 393532 393816 D cobalt transport protein 393532..393816 Clostridium difficile R20291 8469571 YP_003216839.1 CDS cbiQ NC_013316.1 393819 394517 D cobalt transport protein 393819..394517 Clostridium difficile R20291 8469572 YP_003216840.1 CDS cbiO NC_013316.1 394510 395328 D cobalt ABC transporter ATP-binding protein 394510..395328 Clostridium difficile R20291 8469575 YP_003216841.1 CDS pcrA NC_013316.1 395559 397847 D ATP-dependent DNA helicase 395559..397847 Clostridium difficile R20291 8469573 YP_003216842.1 CDS CDR20291_0334 NC_013316.1 397864 399162 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 397864..399162 Clostridium difficile R20291 8470056 YP_003216843.1 CDS CDR20291_0335 NC_013316.1 399193 399945 D hypothetical protein 399193..399945 Clostridium difficile R20291 8467066 YP_003216844.1 CDS ppiB NC_013316.1 400010 400534 D peptidyl-prolyl cis-trans isomerase 400010..400534 Clostridium difficile R20291 8467067 YP_003216845.1 CDS ppaC NC_013316.1 402547 404145 R catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase complement(402547..404145) Clostridium difficile R20291 8467068 YP_003216846.1 CDS adhE NC_013316.1 404993 407665 D bifunctional acetaldehyde-CoA/alcohol dehydrogenase 404993..407665 Clostridium difficile R20291 8470097 YP_003216847.1 CDS CDR20291_0340 NC_013316.1 408025 408366 R hypothetical protein complement(408025..408366) Clostridium difficile R20291 8469478 YP_003216848.1 CDS CDR20291_0341 NC_013316.1 408393 409064 R ABC transporter ATP-binding protein complement(408393..409064) Clostridium difficile R20291 8467069 YP_003216849.1 CDS CDR20291_0342 NC_013316.1 409076 411661 R ABC transporter permease complement(409076..411661) Clostridium difficile R20291 8467070 YP_003216850.1 CDS CDR20291_0343 NC_013316.1 411869 412804 D two-component sensor histidine kinase 411869..412804 Clostridium difficile R20291 8467071 YP_003216851.1 CDS CDR20291_0344 NC_013316.1 412823 413560 D two-component response regulator 412823..413560 Clostridium difficile R20291 8467072 YP_003216852.1 CDS CDR20291_0345 NC_013316.1 413720 418777 R hypothetical protein complement(413720..418777) Clostridium difficile R20291 8467073 YP_003216853.1 CDS CDR20291_0346 NC_013316.1 418802 419221 R hypothetical protein complement(418802..419221) Clostridium difficile R20291 8467074 YP_003216854.1 CDS CDR20291_0347 NC_013316.1 419454 419705 R hypothetical protein complement(419454..419705) Clostridium difficile R20291 8467075 YP_003216855.1 CDS CDR20291_0348 NC_013316.1 419794 420525 D hypothetical protein 419794..420525 Clostridium difficile R20291 8467076 YP_003216856.1 CDS CDR20291_0349 NC_013316.1 420512 421495 D metallo-beta-lactamase 420512..421495 Clostridium difficile R20291 8467077 YP_003216857.1 CDS CDR20291_0350 NC_013316.1 421546 422358 D guanosine 3',5'-bis-pyrophosphate (ppGpp) synthesis/degradation protein 421546..422358 Clostridium difficile R20291 8467078 YP_003216858.1 CDS CDR20291_0351 NC_013316.1 422468 423160 D phosphoesterase 422468..423160 Clostridium difficile R20291 8467079 YP_003216859.1 CDS CDR20291_0352 NC_013316.1 423247 424188 D hypothetical protein 423247..424188 Clostridium difficile R20291 8467080 YP_003216860.1 CDS CDR20291_0353 NC_013316.1 424222 425382 D hypothetical protein 424222..425382 Clostridium difficile R20291 8467081 YP_003216861.1 CDS CDR20291_0354 NC_013316.1 425522 426094 D hypothetical protein 425522..426094 Clostridium difficile R20291 8467082 YP_003216862.1 CDS CDR20291_0355 NC_013316.1 426122 426613 D hypothetical protein 426122..426613 Clostridium difficile R20291 8467083 YP_003216863.1 CDS CDR20291_0356 NC_013316.1 426842 427393 D transcriptional regulator 426842..427393 Clostridium difficile R20291 8467084 YP_003216864.1 CDS CDR20291_0357 NC_013316.1 427479 428411 D hypothetical protein 427479..428411 Clostridium difficile R20291 8467085 YP_003216865.1 CDS CDR20291_0358 NC_013316.1 428466 429329 D hypothetical protein 428466..429329 Clostridium difficile R20291 8467086 YP_003216866.1 CDS bglF NC_013316.1 429576 431438 D PTS system beta-glucoside-specific transporter subunit IIABC 429576..431438 Clostridium difficile R20291 8467087 YP_003216867.1 CDS bglA NC_013316.1 431441 432907 D 6-phospho-beta-glucosidase 431441..432907 Clostridium difficile R20291 8469545 YP_003216868.1 CDS bglG NC_013316.1 432931 433767 D beta-glucoside bgl operon transcription antiterminator 432931..433767 Clostridium difficile R20291 8469542 YP_003216869.1 CDS CDR20291_0362 NC_013316.1 434333 435916 D asparagine synthetase 434333..435916 Clostridium difficile R20291 8469547 YP_003216870.1 CDS CDR20291_0363 NC_013316.1 435981 436577 R radical SAM protein complement(435981..436577) Clostridium difficile R20291 8467088 YP_003216871.1 CDS CDR20291_0364 NC_013316.1 436604 437122 R hypothetical protein complement(436604..437122) Clostridium difficile R20291 8467089 YP_003216872.1 CDS ldhA NC_013316.1 437493 438491 R (R)-2-hydroxyisocaproate dehydrogenase complement(437493..438491) Clostridium difficile R20291 8467090 YP_003216873.1 CDS hadA NC_013316.1 439168 440367 D isocaprenoyl-CoA:2-hydroxyisocaproate CoA-transferase 439168..440367 Clostridium difficile R20291 8469929 YP_003216874.1 CDS hadI NC_013316.1 440397 441206 D activator of 2-hydroxyisocaproyl-CoA dehydratase 440397..441206 Clostridium difficile R20291 8469855 YP_003216875.1 CDS hadB NC_013316.1 441215 442447 D oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase subunit 441215..442447 Clostridium difficile R20291 8469858 YP_003216876.1 CDS hadC NC_013316.1 442447 443574 D oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase subunit 442447..443574 Clostridium difficile R20291 8469856 YP_003216877.1 CDS acdB NC_013316.1 443622 444755 D acyl-CoA dehydrogenase 443622..444755 Clostridium difficile R20291 8469857 YP_003216878.1 CDS etfB1 NC_013316.1 444788 445573 D electron transfer flavoprotein subunit beta 444788..445573 Clostridium difficile R20291 8469462 YP_003216879.1 CDS etfA1 NC_013316.1 445592 446629 D electron transfer flavoprotein subunit alpha 445592..446629 Clostridium difficile R20291 8469696 YP_003216880.1 CDS CDR20291_0373 NC_013316.1 447112 448743 D sigma-54-dependent transcriptional regulator 447112..448743 Clostridium difficile R20291 8469693 YP_003216881.1 CDS fba NC_013316.1 448878 449804 R fructose-bisphosphate aldolase complement(448878..449804) Clostridium difficile R20291 8467091 YP_003216882.1 CDS CDR20291_0375 NC_013316.1 450134 450463 D hypothetical protein 450134..450463 Clostridium difficile R20291 8469716 YP_003216883.1 CDS CDR20291_0376 NC_013316.1 450463 453069 D pseudouridine synthase join(450463..450666,452497..453069) Clostridium difficile R20291 8467092 YP_003216884.1 CDS CDR20291_0377 NC_013316.1 451314 452432 D transposase-like protein b 451314..452432 Clostridium difficile R20291 8467093 YP_003216885.1 CDS CDR20291_0378 NC_013316.1 453096 454457 D tRNA (Uracil-5-)-methyltransferase 453096..454457 Clostridium difficile R20291 8467094 YP_003216886.1 CDS CDR20291_0379 NC_013316.1 454980 456014 D hypothetical protein 454980..456014 Clostridium difficile R20291 8467095 YP_003216887.1 CDS CDR20291_0380 NC_013316.1 456101 456304 D hypothetical protein 456101..456304 Clostridium difficile R20291 8467096 YP_003216888.1 CDS CDR20291_0381 NC_013316.1 456475 457635 D cell surface protein 456475..457635 Clostridium difficile R20291 8467097 YP_003216889.1 CDS CDR20291_0382 NC_013316.1 458166 459065 R integrase, catalytic region complement(458166..459065) Clostridium difficile R20291 8467098 YP_003216890.1 CDS CDR20291_0383 NC_013316.1 459059 459730 R hypothetical protein complement(459059..459730) Clostridium difficile R20291 8467099 YP_003216891.1 CDS rocR NC_013316.1 460831 462204 D arginine utilization sigma-54 dependent regulatory protein 460831..462204 Clostridium difficile R20291 8467100 YP_003216892.1 CDS CDR20291_0385 NC_013316.1 462460 463527 D oxidoreductase 462460..463527 Clostridium difficile R20291 8470188 YP_003216893.1 CDS CDR20291_0386 NC_013316.1 463624 463932 D hypothetical protein 463624..463932 Clostridium difficile R20291 8467101 YP_003216894.1 CDS CDR20291_0387 NC_013316.1 463925 465355 D pyridoxal-phosphate dependent enzyme 463925..465355 Clostridium difficile R20291 8467102 YP_003216895.1 CDS oraS NC_013316.1 465433 465807 D D-ornithine aminomutase S component 465433..465807 Clostridium difficile R20291 8467103 YP_003216896.1 CDS oraE NC_013316.1 465801 468005 D D-ornithine aminomutase E component 465801..468005 Clostridium difficile R20291 8470046 YP_003216897.1 CDS CDR20291_0390 NC_013316.1 468005 469414 D component of D-ornithine aminomutase 468005..469414 Clostridium difficile R20291 8470045 YP_003216898.1 CDS CDR20291_0391 NC_013316.1 469399 470463 D amino acid racemase 469399..470463 Clostridium difficile R20291 8467104 YP_003216899.1 CDS CDR20291_0392 NC_013316.1 470493 471914 D Na+/H+ antiporter 470493..471914 Clostridium difficile R20291 8467105 YP_003216900.1 CDS CDR20291_0393 NC_013316.1 472343 472807 D hypothetical protein 472343..472807 Clostridium difficile R20291 8467106 YP_003216901.1 CDS CDR20291_0394 NC_013316.1 473105 473467 D hypothetical protein 473105..473467 Clostridium difficile R20291 8467107 YP_003216902.1 CDS CDR20291_0395 NC_013316.1 474038 474922 D AraC family transcriptional regulator 474038..474922 Clostridium difficile R20291 8467108 YP_003216903.1 CDS CDR20291_0396 NC_013316.1 475180 477294 D hypothetical protein 475180..477294 Clostridium difficile R20291 8467109 YP_003216904.1 CDS CDR20291_0397 NC_013316.1 477556 479799 R antibiotic resistance ABC transporter ATP-binding protein complement(477556..479799) Clostridium difficile R20291 8467110 YP_003216905.1 CDS CDR20291_0398 NC_013316.1 480131 480847 D hypothetical protein 480131..480847 Clostridium difficile R20291 8467111 YP_003216906.1 CDS CDR20291_0399 NC_013316.1 480875 481813 D beta-lactamase 480875..481813 Clostridium difficile R20291 8467112 YP_003216907.1 CDS CDR20291_0400 NC_013316.1 482157 482840 D ABC transporter ATP-binding protein 482157..482840 Clostridium difficile R20291 8467113 YP_003216908.1 CDS CDR20291_0401 NC_013316.1 482837 485497 D ABC transporter permease 482837..485497 Clostridium difficile R20291 8467114 YP_003216909.1 CDS CDR20291_0402 NC_013316.1 485678 486859 R two-component sensor histidine kinase complement(485678..486859) Clostridium difficile R20291 8467115 YP_003216910.1 CDS CDR20291_0403 NC_013316.1 486859 487521 R two-component response regulator complement(486859..487521) Clostridium difficile R20291 8467116 YP_003216911.1 CDS CDR20291_0404 NC_013316.1 487666 488199 R TetR family transcriptional regulator complement(487666..488199) Clostridium difficile R20291 8467117 YP_003216912.1 CDS CDR20291_0405 NC_013316.1 488513 489445 R transposase-like protein b complement(488513..489445) Clostridium difficile R20291 8467118 YP_003216913.1 CDS CDR20291_0406 NC_013316.1 490459 491064 D hydrolase 490459..491064 Clostridium difficile R20291 8467119 YP_003216914.1 CDS CDR20291_0407 NC_013316.1 491568 492317 D RpiR family transcriptional regulator 491568..492317 Clostridium difficile R20291 8467120 YP_003216915.1 CDS CDR20291_0408 NC_013316.1 492314 493078 D RpiR family transcriptional regulator 492314..493078 Clostridium difficile R20291 8467121 YP_003216916.1 CDS CDR20291_0409 NC_013316.1 493177 493998 D hydrolase 493177..493998 Clostridium difficile R20291 8467122 YP_003216917.1 CDS malL NC_013316.1 494012 495676 D oligo-1,6-glucosidase 494012..495676 Clostridium difficile R20291 8467123 YP_003216918.1 CDS CDR20291_0411 NC_013316.1 495681 497555 D PTS system transporter subunit IIABC 495681..497555 Clostridium difficile R20291 8469949 YP_003216919.1 CDS blaR NC_013316.1 497910 499709 R beta-lactamase-inducing penicillin-binding protein complement(497910..499709) Clostridium difficile R20291 8467124 YP_003216920.1 CDS blaI NC_013316.1 499712 500098 R penicillinase repressor complement(499712..500098) Clostridium difficile R20291 8469555 YP_003216921.1 CDS CDR20291_0414 NC_013316.1 500331 501008 D iron-sulfur flavoprotein 500331..501008 Clostridium difficile R20291 8469554 YP_003216922.1 CDS CDR20291_0415 NC_013316.1 501020 501445 D MarR family transcriptional regulator 501020..501445 Clostridium difficile R20291 8467125 YP_003216923.1 CDS CDR20291_0416 NC_013316.1 501513 502292 D iron-sulfur protein 501513..502292 Clostridium difficile R20291 8467126 YP_003216924.1 CDS CDR20291_0417 NC_013316.1 502542 503285 R hypothetical protein complement(502542..503285) Clostridium difficile R20291 8467127 YP_003216925.1 CDS CDR20291_0418 NC_013316.1 503311 503568 R hypothetical protein complement(503311..503568) Clostridium difficile R20291 8467128 YP_003216926.1 CDS CDR20291_0419 NC_013316.1 503894 504406 D hypothetical protein 503894..504406 Clostridium difficile R20291 8467129 YP_003216927.1 CDS spaF NC_013316.1 504592 505365 D lantibiotic ABC transporter ATP-binding protein 504592..505365 Clostridium difficile R20291 8467130 YP_003216928.1 CDS spaE NC_013316.1 505362 506132 D lantibiotic ABC transporter permease 505362..506132 Clostridium difficile R20291 8470294 YP_003216929.1 CDS spaG NC_013316.1 506129 506905 D lantibiotic ABC transporter permease 506129..506905 Clostridium difficile R20291 8470293 YP_003216930.1 CDS spaR NC_013316.1 506990 507652 D lantibiotic resistance two-component response regulator 506990..507652 Clostridium difficile R20291 8470295 YP_003216931.1 CDS spaK NC_013316.1 507671 509095 D lantibiotic resistance two-component sensor kinase 507671..509095 Clostridium difficile R20291 8470297 YP_003216932.1 CDS CDR20291_0425 NC_013316.1 509335 511803 R ABC transporter permease complement(509335..511803) Clostridium difficile R20291 8470296 YP_003216933.1 CDS CDR20291_0426 NC_013316.1 511806 512474 R ABC transporter ATP-binding protein complement(511806..512474) Clostridium difficile R20291 8467131 YP_003216934.1 CDS CDR20291_0427 NC_013316.1 512760 513233 R hypothetical protein complement(512760..513233) Clostridium difficile R20291 8467132 YP_003216935.1 CDS CDR20291_0428 NC_013316.1 513504 514646 R two-component sensor histidine kinase complement(513504..514646) Clostridium difficile R20291 8467133 YP_003216936.1 CDS CDR20291_0429 NC_013316.1 514652 515326 R two-component response regulator complement(514652..515326) Clostridium difficile R20291 8467134 YP_003216937.1 CDS CDR20291_0430 NC_013316.1 516147 516974 R carbon-nitrogen hydrolase complement(516147..516974) Clostridium difficile R20291 8467135 YP_003216938.1 CDS sugE NC_013316.1 517356 517676 D quaternary ammonium compound-resistance protein 517356..517676 Clostridium difficile R20291 8467136 YP_003216939.1 CDS CDR20291_0432 NC_013316.1 517809 518489 R phosphoribosylaminoimidazole-succinocarboxamide synthase complement(517809..518489) Clostridium difficile R20291 8470351 YP_003216940.1 CDS CDR20291_0433 NC_013316.1 518885 519937 D sugar-phosphate dehydrogenase 518885..519937 Clostridium difficile R20291 8467137 YP_003216941.1 CDS CDR20291_0434 NC_013316.1 519984 520400 D PTS system transporter subunit IIA 519984..520400 Clostridium difficile R20291 8467138 YP_003216942.1 CDS CDR20291_0435 NC_013316.1 520429 520902 D PTS system transporter subunit IIB 520429..520902 Clostridium difficile R20291 8467139 YP_003216943.1 CDS CDR20291_0436 NC_013316.1 520949 521707 D PTS system transporter subunit IIC 520949..521707 Clostridium difficile R20291 8467140 YP_003216944.1 CDS CDR20291_0437 NC_013316.1 521731 522570 D PTS system transporter subunit IID 521731..522570 Clostridium difficile R20291 8467141 YP_003216945.1 CDS CDR20291_0438 NC_013316.1 523021 523668 D DNA-binding response regulator 523021..523668 Clostridium difficile R20291 8467142 YP_003216946.1 CDS CDR20291_0439 NC_013316.1 523661 525055 D sensor histidine kinase 523661..525055 Clostridium difficile R20291 8467143 YP_003216947.1 CDS CDR20291_0440 NC_013316.1 525456 528968 D hemagglutinin/adhesin 525456..528968 Clostridium difficile R20291 8467144 YP_003216948.1 CDS CDR20291_0441 NC_013316.1 529409 530653 R D-alanyl-D-alanine carboxypeptidase complement(529409..530653) Clostridium difficile R20291 8467145 YP_003216949.1 CDS CDR20291_0442 NC_013316.1 530696 533530 R transcription antiterminator complement(530696..533530) Clostridium difficile R20291 8467146 YP_003216950.1 CDS CDR20291_0443 NC_013316.1 534217 535014 D hypothetical protein 534217..535014 Clostridium difficile R20291 8467147 YP_003216951.1 CDS CDR20291_0444 NC_013316.1 535015 535509 D hypothetical protein 535015..535509 Clostridium difficile R20291 8467148 YP_003216952.1 CDS CDR20291_0445 NC_013316.1 535735 536913 D hypothetical protein 535735..536913 Clostridium difficile R20291 8467149 YP_003216953.1 CDS CDR20291_0446 NC_013316.1 537167 538774 D two-component sensor histidine kinase 537167..538774 Clostridium difficile R20291 8467150 YP_003216954.1 CDS CDR20291_0447 NC_013316.1 538765 539469 D two-component response regulator 538765..539469 Clostridium difficile R20291 8467151 YP_003216955.1 CDS CDR20291_0448 NC_013316.1 540637 543735 D signaling protein 540637..543735 Clostridium difficile R20291 8467152 YP_003216956.1 CDS CDR20291_0449 NC_013316.1 543858 545144 D transcriptional regulator 543858..545144 Clostridium difficile R20291 8467153 YP_003216957.1 CDS CDR20291_0450 NC_013316.1 545730 546836 R peptidase complement(545730..546836) Clostridium difficile R20291 8467154 YP_003216958.1 CDS CDR20291_0451 NC_013316.1 546871 548412 R aminobenzoyl-glutamate transporter complement(546871..548412) Clostridium difficile R20291 8467155 YP_003216959.1 CDS CDR20291_0452 NC_013316.1 548774 549520 R metallo-beta-lactamase complement(548774..549520) Clostridium difficile R20291 8467156 YP_003216960.1 CDS CDR20291_0453 NC_013316.1 549732 551042 R amidohydrolase complement(549732..551042) Clostridium difficile R20291 8467157 YP_003216961.1 CDS CDR20291_0454 NC_013316.1 551055 551525 R hypothetical protein complement(551055..551525) Clostridium difficile R20291 8467158 YP_003216962.1 CDS CDR20291_0455 NC_013316.1 551529 552380 R hypothetical protein complement(551529..552380) Clostridium difficile R20291 8467159 YP_003216963.1 CDS CDR20291_0456 NC_013316.1 553305 554216 D DeoR family transcriptional regulator 553305..554216 Clostridium difficile R20291 8467160 YP_003216964.1 CDS CDR20291_0457 NC_013316.1 554391 554888 D hypothetical protein 554391..554888 Clostridium difficile R20291 8467161 YP_003216965.1 CDS cheB NC_013316.1 555632 555994 D chemotaxis protein 555632..555994 Clostridium difficile R20291 8467162 YP_003216966.1 CDS cheC NC_013316.1 556156 556677 D chemotaxis protein CheC 556156..556677 Clostridium difficile R20291 8469584 YP_003216967.1 CDS cheD NC_013316.1 556674 557159 D chemotaxis protein 556674..557159 Clostridium difficile R20291 8469585 YP_003216968.1 CDS cheW NC_013316.1 557202 557720 D chemotaxis protein 557202..557720 Clostridium difficile R20291 8469586 YP_003216969.1 CDS CDR20291_0462 NC_013316.1 557835 558815 D chemosensory protein 557835..558815 Clostridium difficile R20291 8469588 YP_003216970.1 CDS CDR20291_0463 NC_013316.1 558841 560544 D methyl accpeting chemotaxis protein 558841..560544 Clostridium difficile R20291 8467163 YP_003216971.1 CDS cheA NC_013316.1 560771 562903 D chemotaxis protein 560771..562903 Clostridium difficile R20291 8467164 YP_003216972.1 CDS CDR20291_0465 NC_013316.1 562916 563356 D chemotaxis protein 562916..563356 Clostridium difficile R20291 8469583 YP_003216973.1 CDS cheR NC_013316.1 563392 564195 D chemotaxis protein methyltransferase 563392..564195 Clostridium difficile R20291 8467165 YP_003216974.1 CDS CDR20291_0467 NC_013316.1 564253 564831 D chemotaxis-related protein-glutamate methylesterase 564253..564831 Clostridium difficile R20291 8469587 YP_003216975.1 CDS CDR20291_0468 NC_013316.1 564937 565800 D hypothetical protein 564937..565800 Clostridium difficile R20291 8467166 YP_003216976.1 CDS CDR20291_0469 NC_013316.1 565867 566856 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 565867..566856 Clostridium difficile R20291 8467167 YP_003216977.1 CDS CDR20291_0470 NC_013316.1 566948 567559 D lipoprotein 566948..567559 Clostridium difficile R20291 8467168 YP_003216978.1 CDS CDR20291_0471 NC_013316.1 568002 568799 D hypothetical protein 568002..568799 Clostridium difficile R20291 8467169 YP_003216979.1 CDS CDR20291_0472 NC_013316.1 569004 569363 D penicillin-binding protein repressor 569004..569363 Clostridium difficile R20291 8467170 YP_003216980.1 CDS CDR20291_0473 NC_013316.1 569374 570756 D penicillin-binding protein 569374..570756 Clostridium difficile R20291 8467171 YP_003216981.1 CDS CDR20291_0474 NC_013316.1 570972 571382 D hypothetical protein 570972..571382 Clostridium difficile R20291 8467172 YP_003216982.1 CDS CDR20291_0475 NC_013316.1 572575 573231 D hypothetical protein 572575..573231 Clostridium difficile R20291 8467173 YP_003216983.1 CDS sleC NC_013316.1 573701 574972 R spore peptidoglycan hydrolase complement(573701..574972) Clostridium difficile R20291 8467174 YP_003216984.1 CDS sleB NC_013316.1 575217 575933 D spore-cortex-lytic protein 575217..575933 Clostridium difficile R20291 8470286 YP_003216985.1 CDS CDR20291_0478 NC_013316.1 576012 577322 D methylase 576012..577322 Clostridium difficile R20291 8470285 YP_003216986.1 CDS sip2 NC_013316.1 577422 577958 D signal peptidase I 577422..577958 Clostridium difficile R20291 8467175 YP_003216987.1 CDS sip2 NC_013316.1 578124 578660 D singal peptidase I 578124..578660 Clostridium difficile R20291 8470282 YP_003216988.1 CDS CDR20291_0481 NC_013316.1 578670 579425 D endonuclease 578670..579425 Clostridium difficile R20291 8470283 YP_003216989.1 CDS CDR20291_0482 NC_013316.1 579499 581166 D phosphoribulokinase/uridine kinase 579499..581166 Clostridium difficile R20291 8467176 YP_003216990.1 CDS glsA NC_013316.1 581744 582673 D catalyzes the formation of glutamate from glutamine; glutaminase 581744..582673 Clostridium difficile R20291 8467177 YP_003216991.1 CDS CDR20291_0484 NC_013316.1 582771 583334 D hypothetical protein 582771..583334 Clostridium difficile R20291 8469819 YP_003216992.1 CDS nfo NC_013316.1 583822 584658 D endonuclease IV 583822..584658 Clostridium difficile R20291 8467178 YP_003216993.1 CDS CDR20291_0486 NC_013316.1 584910 585905 D aldo/keto reductase 584910..585905 Clostridium difficile R20291 8470013 YP_003216994.1 CDS CDR20291_0487 NC_013316.1 586162 586578 R endonuclease complement(586162..586578) Clostridium difficile R20291 8467179 YP_003216995.1 CDS CDR20291_0488 NC_013316.1 587566 588480 D iron-sulfur cluster protein 587566..588480 Clostridium difficile R20291 8467180 YP_003216996.1 CDS CDR20291_0489 NC_013316.1 588586 590823 D ATP-binding protein 588586..590823 Clostridium difficile R20291 8467181 YP_003216997.1 CDS nth NC_013316.1 591467 592072 D endonuclease iii 591467..592072 Clostridium difficile R20291 8467182 YP_003216998.1 CDS CDR20291_0491 NC_013316.1 592266 592736 D RNA methylase 592266..592736 Clostridium difficile R20291 8470022 YP_003216999.1 CDS CDR20291_0492 NC_013316.1 592772 593620 D hypothetical protein 592772..593620 Clostridium difficile R20291 8467183 YP_003217000.1 CDS CDR20291_0493 NC_013316.1 593976 594980 D outer membrane lipoprotein 593976..594980 Clostridium difficile R20291 8467184 YP_003217001.1 CDS CDR20291_0494 NC_013316.1 595096 596217 D outer membrane lipoprotein 595096..596217 Clostridium difficile R20291 8467185 YP_003217002.1 CDS CDR20291_0495 NC_013316.1 596640 597401 D hypothetical protein 596640..597401 Clostridium difficile R20291 8467186 YP_003217003.1 CDS CDR20291_0496 NC_013316.1 597431 598222 D hypothetical protein 597431..598222 Clostridium difficile R20291 8467187 YP_003217004.1 CDS CDR20291_0497 NC_013316.1 598402 599004 D hypothetical protein 598402..599004 Clostridium difficile R20291 8467188 YP_003217005.1 CDS thrS NC_013316.1 599774 601786 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 599774..601786 Clostridium difficile R20291 8467189 YP_003217006.1 CDS CDR20291_0500 NC_013316.1 603722 604840 D transposase-like protein b 603722..604840 Clostridium difficile R20291 8467190 YP_003217007.1 CDS CDR20291_0501 NC_013316.1 605838 606875 R hypothetical protein complement(605838..606875) Clostridium difficile R20291 8467191 YP_003217008.1 CDS CDR20291_0502 NC_013316.1 606868 607554 R hypothetical protein complement(606868..607554) Clostridium difficile R20291 8467192 YP_003217009.1 CDS CDR20291_0503 NC_013316.1 608247 609587 D two-component sensor histidine kinase 608247..609587 Clostridium difficile R20291 8467193 YP_003217010.1 CDS CDR20291_0504 NC_013316.1 610265 610888 R hypothetical protein complement(610265..610888) Clostridium difficile R20291 8467194 YP_003217011.1 CDS CDR20291_0505 NC_013316.1 610995 612245 R efflux protein complement(610995..612245) Clostridium difficile R20291 8467195 YP_003217012.1 CDS CDR20291_0506 NC_013316.1 612537 613115 R TetR family transcriptional regulator complement(612537..613115) Clostridium difficile R20291 8467196 YP_003217013.1 CDS gapN NC_013316.1 613454 614914 D NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 613454..614914 Clostridium difficile R20291 8467197 YP_003217014.1 CDS CDR20291_0508 NC_013316.1 615288 615893 D TetR family transcriptional regulator 615288..615893 Clostridium difficile R20291 8469791 YP_003217015.1 CDS CDR20291_0509 NC_013316.1 615890 618463 D PEP-utilizing kinase 615890..618463 Clostridium difficile R20291 8467198 YP_003217016.1 CDS CDR20291_0510 NC_013316.1 618722 619213 R signaling protein complement(618722..619213) Clostridium difficile R20291 8467199 YP_003217017.1 CDS CDR20291_0511 NC_013316.1 619729 620004 D hypothetical protein 619729..620004 Clostridium difficile R20291 8467200 YP_003217018.1 CDS CDR20291_0512 NC_013316.1 620024 620311 D hypothetical protein 620024..620311 Clostridium difficile R20291 8467201 YP_003217019.1 CDS CDR20291_0513 NC_013316.1 620784 625162 D hypothetical protein join(620784..621215,623039..625162) Clostridium difficile R20291 8467202 YP_003217020.1 CDS CDR20291_0515 NC_013316.1 625177 630387 D hypothetical protein 625177..630387 Clostridium difficile R20291 8467204 YP_003217021.1 CDS CDR20291_0516 NC_013316.1 630612 632711 R cation transporting ATPase complement(630612..632711) Clostridium difficile R20291 8467205 YP_003217022.1 CDS CDR20291_0517 NC_013316.1 632754 633149 R hypothetical protein complement(632754..633149) Clostridium difficile R20291 8467206 YP_003217023.1 CDS CDR20291_0518 NC_013316.1 634583 635023 R hypothetical protein complement(634583..635023) Clostridium difficile R20291 8467207 YP_003217024.1 CDS CDR20291_0519 NC_013316.1 635359 636672 D hypothetical protein 635359..636672 Clostridium difficile R20291 8467208 YP_003217025.1 CDS CDR20291_0520 NC_013316.1 636690 637226 D hypothetical protein 636690..637226 Clostridium difficile R20291 8467209 YP_003217026.1 CDS CDR20291_0521 NC_013316.1 637745 637966 D hypothetical protein 637745..637966 Clostridium difficile R20291 8467210 YP_003217027.1 CDS cotJB1 NC_013316.1 637966 638229 D spore-coat protein 637966..638229 Clostridium difficile R20291 8467211 YP_003217028.1 CDS cotJC1 NC_013316.1 638291 638863 D spore-coat protein 638291..638863 Clostridium difficile R20291 8469612 YP_003217029.1 CDS ogt1 NC_013316.1 639681 640214 D methylated-DNA--protein-cysteine methyltransferase 1 639681..640214 Clostridium difficile R20291 8469614 YP_003217030.1 CDS CDR20291_0525 NC_013316.1 641225 641473 R plasmid-related protein complement(641225..641473) Clostridium difficile R20291 8470036 YP_003217031.1 CDS CDR20291_0526 NC_013316.1 641547 641750 D hypothetical protein 641547..641750 Clostridium difficile R20291 8467212 YP_003217032.1 CDS CDR20291_0527 NC_013316.1 642321 642734 D hypothetical protein 642321..642734 Clostridium difficile R20291 8467213 YP_003217033.1 CDS CDR20291_0528 NC_013316.1 642830 643318 D hypothetical protein 642830..643318 Clostridium difficile R20291 8467214 YP_003217034.1 CDS CDR20291_0530 NC_013316.1 644825 645934 D transposase-like protein b 644825..645934 Clostridium difficile R20291 8467216 YP_003217035.1 CDS CDR20291_0531 NC_013316.1 647572 648585 D membrane-associated metalloprotease 647572..648585 Clostridium difficile R20291 8467217 YP_003217036.1 CDS CDR20291_0532 NC_013316.1 648941 649510 D hypothetical protein 648941..649510 Clostridium difficile R20291 8467218 YP_003217037.1 CDS CDR20291_0533 NC_013316.1 649847 651184 R two-component sensor histidine kinase complement(649847..651184) Clostridium difficile R20291 8467219 YP_003217038.1 CDS CDR20291_0534 NC_013316.1 651624 652352 R two-component response regulator complement(651624..652352) Clostridium difficile R20291 8467220 YP_003217039.1 CDS CDR20291_0535 NC_013316.1 652948 655059 R ABC transporter permease complement(652948..655059) Clostridium difficile R20291 8467221 YP_003217040.1 CDS CDR20291_0536 NC_013316.1 655049 655822 R ABC transporter ATP-binding protein complement(655049..655822) Clostridium difficile R20291 8467222 YP_003217041.1 CDS CDR20291_0537 NC_013316.1 657097 657273 R hypothetical protein complement(657097..657273) Clostridium difficile R20291 8467223 YP_003217042.1 CDS CDR20291_0538 NC_013316.1 657377 658027 R TetR family transcriptional regulator complement(657377..658027) Clostridium difficile R20291 8467224 YP_003217043.1 CDS CDR20291_0539 NC_013316.1 658084 658908 R MerR family transcriptional regulator complement(658084..658908) Clostridium difficile R20291 8467225 YP_003217044.1 CDS CDR20291_0540 NC_013316.1 659086 659979 R hypothetical protein complement(659086..659979) Clostridium difficile R20291 8467226 YP_003217045.1 CDS CDR20291_0541 NC_013316.1 660236 660673 R transcriptional regulator complement(660236..660673) Clostridium difficile R20291 8467227 YP_003217046.1 CDS CDR20291_0542 NC_013316.1 661092 661322 R hypothetical protein complement(661092..661322) Clostridium difficile R20291 8467228 YP_003217047.1 CDS CDR20291_0543 NC_013316.1 662014 662235 R hypothetical protein complement(662014..662235) Clostridium difficile R20291 8467229 YP_003217048.1 CDS CDR20291_0544 NC_013316.1 662660 662800 D hypothetical protein 662660..662800 Clostridium difficile R20291 8467230 YP_003217049.1 CDS CDR20291_0545 NC_013316.1 662815 663072 D phage-related regulatory protein 662815..663072 Clostridium difficile R20291 8467231 YP_003217050.1 CDS CDR20291_0546 NC_013316.1 663506 664759 D phage-related regulatory protein 663506..664759 Clostridium difficile R20291 8467232 YP_003217051.1 CDS CDR20291_0547 NC_013316.1 665465 666766 D phage-related replicative helicase 665465..666766 Clostridium difficile R20291 8467233 YP_003217052.1 CDS CDR20291_0548 NC_013316.1 666842 667117 D phage positive regulator of late transcription 666842..667117 Clostridium difficile R20291 8467234 YP_003217053.1 CDS CDR20291_0549 NC_013316.1 668442 668672 D ferredoxin 668442..668672 Clostridium difficile R20291 8467235 YP_003217054.1 CDS CDR20291_0550 NC_013316.1 668665 669246 D hypothetical protein 668665..669246 Clostridium difficile R20291 8467236 YP_003217055.1 CDS CDR20291_0551 NC_013316.1 670169 671854 D ABC transporter ATP-binding protein/permease 670169..671854 Clostridium difficile R20291 8467237 YP_003217056.1 CDS CDR20291_0552 NC_013316.1 672334 673011 R transcriptional regulator complement(672334..673011) Clostridium difficile R20291 8467238 YP_003217057.1 CDS CDR20291_0553 NC_013316.1 673200 674564 R drug/sodium antiporter complement(673200..674564) Clostridium difficile R20291 8467239 YP_003217058.1 CDS CDR20291_0554 NC_013316.1 674683 675213 D hypothetical protein 674683..675213 Clostridium difficile R20291 8467240 YP_003217059.1 CDS CDR20291_0555 NC_013316.1 675802 676881 D hypothetical protein 675802..676881 Clostridium difficile R20291 8467241 YP_003217060.1 CDS CDR20291_0556 NC_013316.1 677205 677573 D hypothetical protein 677205..677573 Clostridium difficile R20291 8467242 YP_003217061.1 CDS CDR20291_0557 NC_013316.1 677690 678493 D hypothetical protein 677690..678493 Clostridium difficile R20291 8467243 YP_003217062.1 CDS CDR20291_0558 NC_013316.1 678878 679768 D radical SAM protein 678878..679768 Clostridium difficile R20291 8467244 YP_003217063.1 CDS CDR20291_0559 NC_013316.1 680231 680674 D acetyltransferase 680231..680674 Clostridium difficile R20291 8467245 YP_003217064.1 CDS CDR20291_0560 NC_013316.1 680816 681016 D hypothetical protein 680816..681016 Clostridium difficile R20291 8467246 YP_003217065.1 CDS CDR20291_0561 NC_013316.1 681567 682475 D hypothetical protein 681567..682475 Clostridium difficile R20291 8467247 YP_003217066.1 CDS CDR20291_0562 NC_013316.1 682655 683143 D hypothetical protein 682655..683143 Clostridium difficile R20291 8467248 YP_003217067.1 CDS CDR20291_0563 NC_013316.1 683229 683636 D hypothetical protein 683229..683636 Clostridium difficile R20291 8467249 YP_003217068.1 CDS CDR20291_0564 NC_013316.1 683637 683855 D transcriptional regulator 683637..683855 Clostridium difficile R20291 8467250 YP_003217069.1 CDS CDR20291_0565 NC_013316.1 685290 685979 D two-component response regulator 685290..685979 Clostridium difficile R20291 8467251 YP_003217070.1 CDS CDR20291_0566 NC_013316.1 685979 686896 D two-component sensor histidine kinase 685979..686896 Clostridium difficile R20291 8467252 YP_003217071.1 CDS CDR20291_0567 NC_013316.1 686966 687895 D lantibiotic ABC transporter ATP-binding protein 686966..687895 Clostridium difficile R20291 8467253 YP_003217072.1 CDS CDR20291_0568 NC_013316.1 687892 688572 D lantibiotic ABC transporter permease 687892..688572 Clostridium difficile R20291 8467254 YP_003217073.1 CDS CDR20291_0569 NC_013316.1 689017 689718 D fic family protein 689017..689718 Clostridium difficile R20291 8467255 YP_003217074.1 CDS CDR20291_0570 NC_013316.1 690613 691272 D GntR family transcriptional regulator 690613..691272 Clostridium difficile R20291 8467256 YP_003217075.1 CDS CDR20291_0571 NC_013316.1 691550 693616 D peptidase 691550..693616 Clostridium difficile R20291 8467257 YP_003217076.1 CDS CDR20291_0572 NC_013316.1 693633 695588 D peptidase 693633..695588 Clostridium difficile R20291 8467258 YP_003217077.1 CDS CDR20291_0573 NC_013316.1 695604 696794 D hypothetical protein 695604..696794 Clostridium difficile R20291 8467259 YP_003217078.1 CDS CDR20291_0574 NC_013316.1 697928 698302 D GntR family transcriptional regulator 697928..698302 Clostridium difficile R20291 8467260 YP_003217079.1 CDS CDR20291_0575 NC_013316.1 698289 699161 D ABC transporter ATP-binding protein 698289..699161 Clostridium difficile R20291 8467261 YP_003217080.1 CDS CDR20291_0576 NC_013316.1 699164 699802 D ABC transporter permease 699164..699802 Clostridium difficile R20291 8467262 YP_003217081.1 CDS CDR20291_0577 NC_013316.1 700776 701510 D metallo-beta-lactamase 700776..701510 Clostridium difficile R20291 8467263 YP_003217082.1 CDS CDR20291_0578 NC_013316.1 702652 703908 D chloride ion channel protein 702652..703908 Clostridium difficile R20291 8467264 YP_003217083.1 CDS u2 NC_013316.1 703971 705164 D Na(+)/H(+) antiporter 703971..705164 Clostridium difficile R20291 8467265 YP_003217084.1 CDS u1 NC_013316.1 705371 705751 D regulatory protein 705371..705751 Clostridium difficile R20291 8470410 YP_003217085.1 CDS tcdD NC_013316.1 706660 707214 D transcriptional regulator 706660..707214 Clostridium difficile R20291 8470409 YP_003217086.1 CDS tcdB NC_013316.1 707545 714645 D toxin B 707545..714645 Clostridium difficile R20291 8470357 YP_003217087.1 CDS tcdE NC_013316.1 714767 715267 D cell wall hydrolase protein 714767..715267 Clostridium difficile R20291 8470356 YP_003217088.1 CDS tcdA NC_013316.1 715995 724127 D toxin A 715995..724127 Clostridium difficile R20291 8470358 YP_003217089.1 CDS dtxA NC_013316.1 724462 725022 R hypothetical protein complement(724462..725022) Clostridium difficile R20291 8470355 YP_003217090.1 CDS d1 NC_013316.1 725559 725804 D hypothetical protein 725559..725804 Clostridium difficile R20291 8469683 YP_003217091.1 CDS CDR20291_0587 NC_013316.1 726021 726290 R hypothetical protein complement(726021..726290) Clostridium difficile R20291 8469641 YP_003217092.1 CDS d2 NC_013316.1 727324 728061 R lantibiotic ABC transporter permease complement(727324..728061) Clostridium difficile R20291 8467266 YP_003217093.1 CDS d3 NC_013316.1 728073 728834 R lantibiotic ABC transporter permease complement(728073..728834) Clostridium difficile R20291 8469642 YP_003217094.1 CDS d4 NC_013316.1 728834 729757 R lantibiotic ABC transporter ATP-binding protein complement(728834..729757) Clostridium difficile R20291 8469643 YP_003217095.1 CDS CDR20291_0591 NC_013316.1 729913 730626 D two-component response regulator 729913..730626 Clostridium difficile R20291 8469644 YP_003217096.1 CDS CDR20291_0592 NC_013316.1 730671 732077 D two-component sensor histidine kinase 730671..732077 Clostridium difficile R20291 8467267 YP_003217097.1 CDS CDR20291_0593 NC_013316.1 733666 734055 D regulatory protein 733666..734055 Clostridium difficile R20291 8467268 YP_003217098.1 CDS CDR20291_0594 NC_013316.1 734800 735270 D glyoxalase 734800..735270 Clostridium difficile R20291 8467269 YP_003217099.1 CDS CDR20291_0596 NC_013316.1 737338 738045 D hypothetical protein 737338..738045 Clostridium difficile R20291 8467271 YP_003217100.1 CDS CDR20291_0597 NC_013316.1 738225 738440 D hypothetical protein 738225..738440 Clostridium difficile R20291 8467272 YP_003217101.1 CDS CDR20291_0598 NC_013316.1 738657 739157 D acetyltransferase 738657..739157 Clostridium difficile R20291 8467273 YP_003217102.1 CDS CDR20291_0599 NC_013316.1 739407 740186 R hypothetical protein complement(739407..740186) Clostridium difficile R20291 8467274 YP_003217103.1 CDS CDR20291_0600 NC_013316.1 740183 740686 R RNA polymerase sigma factor complement(740183..740686) Clostridium difficile R20291 8467275 YP_003217104.1 CDS CDR20291_0601 NC_013316.1 741468 742169 D hypothetical protein 741468..742169 Clostridium difficile R20291 8467276 YP_003217105.1 CDS CDR20291_0602 NC_013316.1 742195 742851 D hypothetical protein 742195..742851 Clostridium difficile R20291 8467277 YP_003217106.1 CDS CDR20291_0603 NC_013316.1 743058 744698 D amidohydrolase 3 743058..744698 Clostridium difficile R20291 8467278 YP_003217107.1 CDS CDR20291_0604 NC_013316.1 745057 746379 D hypothetical protein 745057..746379 Clostridium difficile R20291 8467279 YP_003217108.1 CDS CDR20291_0605 NC_013316.1 746576 747583 D hypothetical protein 746576..747583 Clostridium difficile R20291 8467280 YP_003217109.1 CDS CDR20291_0606 NC_013316.1 747621 749018 D hypothetical protein 747621..749018 Clostridium difficile R20291 8467281 YP_003217110.1 CDS CDR20291_0607 NC_013316.1 749106 750428 D transporter 749106..750428 Clostridium difficile R20291 8467282 YP_003217111.1 CDS CDR20291_0608 NC_013316.1 750470 751509 D sodium:solute symporter join(750470..750697,750697..751509) Clostridium difficile R20291 8467283 YP_003217112.1 CDS CDR20291_0609 NC_013316.1 751544 752566 D LacI family transcriptional regulator 751544..752566 Clostridium difficile R20291 8467284 YP_003217113.1 CDS CDR20291_0610 NC_013316.1 753176 754579 R ATP-dependent peptidase complement(753176..754579) Clostridium difficile R20291 8467285 YP_003217114.1 CDS infC NC_013316.1 755540 755965 D translation initiation factor IF-3 755540..755965 Clostridium difficile R20291 8467286 YP_003217115.1 CDS rpmI NC_013316.1 755993 756187 D 50S ribosomal protein L35 755993..756187 Clostridium difficile R20291 8469903 YP_003217116.1 CDS rplT NC_013316.1 756243 756599 D 50S ribosomal protein L20 756243..756599 Clostridium difficile R20291 8470221 YP_003217117.1 CDS CDR20291_0614 NC_013316.1 756909 757454 D hypothetical protein 756909..757454 Clostridium difficile R20291 8470209 YP_003217118.1 CDS CDR20291_0615 NC_013316.1 757890 759815 D nucleotide phosphodiesterase 757890..759815 Clostridium difficile R20291 8467287 YP_003217119.1 CDS CDR20291_0616 NC_013316.1 760153 762120 D nucleotide phosphodiesterase 760153..762120 Clostridium difficile R20291 8467288 YP_003217120.1 CDS CDR20291_0617 NC_013316.1 762508 763287 D short chain dehydrogenase 762508..763287 Clostridium difficile R20291 8467289 YP_003217121.1 CDS CDR20291_0618 NC_013316.1 763597 764472 R hypothetical protein complement(763597..764472) Clostridium difficile R20291 8467290 YP_003217122.1 CDS CDR20291_0619 NC_013316.1 765143 765961 R MerR family transcriptional regulator complement(765143..765961) Clostridium difficile R20291 8467291 YP_003217123.1 CDS CDR20291_0620 NC_013316.1 766129 766710 D TetR family transcriptional regulator 766129..766710 Clostridium difficile R20291 8467292 YP_003217124.1 CDS CDR20291_0621 NC_013316.1 767065 768807 R exported peptidase complement(767065..768807) Clostridium difficile R20291 8467293 YP_003217125.1 CDS CDR20291_0622 NC_013316.1 769278 770612 D cation transport protein 769278..770612 Clostridium difficile R20291 8467294 YP_003217126.1 CDS CDR20291_0623 NC_013316.1 770923 771594 D cation transport protein 770923..771594 Clostridium difficile R20291 8467295 YP_003217127.1 CDS CDR20291_0624 NC_013316.1 771785 772582 D RNA methylase 771785..772582 Clostridium difficile R20291 8467296 YP_003217128.1 CDS pheS NC_013316.1 773201 774229 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 773201..774229 Clostridium difficile R20291 8467297 YP_003217129.1 CDS pheT NC_013316.1 774246 776639 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 774246..776639 Clostridium difficile R20291 8470076 YP_003217130.1 CDS CDR20291_0627 NC_013316.1 776646 777254 D hypothetical protein 776646..777254 Clostridium difficile R20291 8470077 YP_003217131.1 CDS CDR20291_0628 NC_013316.1 777596 778279 D hypothetical protein 777596..778279 Clostridium difficile R20291 8467298 YP_003217132.1 CDS CDR20291_0629 NC_013316.1 778771 781389 D protease 778771..781389 Clostridium difficile R20291 8467299 YP_003217133.1 CDS CDR20291_0630 NC_013316.1 781493 782071 D phosphohydrolase 781493..782071 Clostridium difficile R20291 8467300 YP_003217134.1 CDS CDR20291_0631 NC_013316.1 782105 782581 D DNA repair protein 782105..782581 Clostridium difficile R20291 8467301 YP_003217135.1 CDS CDR20291_0632 NC_013316.1 783100 783921 D reductase 783100..783921 Clostridium difficile R20291 8467302 YP_003217136.1 CDS CDR20291_0633 NC_013316.1 784144 786657 D signaling protein 784144..786657 Clostridium difficile R20291 8467303 YP_003217137.1 CDS pepD NC_013316.1 786861 788312 R aminoacyl-histidine dipeptidase complement(786861..788312) Clostridium difficile R20291 8467304 YP_003217138.1 CDS CDR20291_0635 NC_013316.1 788629 791007 D DNA mismatch repair protein 788629..791007 Clostridium difficile R20291 8470061 YP_003217139.1 CDS CDR20291_0636 NC_013316.1 791047 791607 R hypothetical protein complement(791047..791607) Clostridium difficile R20291 8467305 YP_003217140.1 CDS argS NC_013316.1 791899 793599 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 791899..793599 Clostridium difficile R20291 8467306 YP_003217141.1 CDS CDR20291_0638 NC_013316.1 793853 794776 D hypothetical protein 793853..794776 Clostridium difficile R20291 8469505 YP_003217142.1 CDS CDR20291_0639 NC_013316.1 795123 796877 D adenosylcobamide-dependent radical SAM protein 795123..796877 Clostridium difficile R20291 8467307 YP_003217143.1 CDS CDR20291_0640 NC_013316.1 796895 798037 D hypothetical protein 796895..798037 Clostridium difficile R20291 8467308 YP_003217144.1 CDS CDR20291_0642 NC_013316.1 798358 799269 D phosphate butyryltransferase 798358..799269 Clostridium difficile R20291 8467310 YP_003217145.1 CDS cooS NC_013316.1 799876 801795 D bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase 799876..801795 Clostridium difficile R20291 8467311 YP_003217146.1 CDS cooC NC_013316.1 802105 802884 D carbon monoxide dehydrogenase accessory protein 802105..802884 Clostridium difficile R20291 8469611 YP_003217147.1 CDS fhs NC_013316.1 803133 804809 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 803133..804809 Clostridium difficile R20291 8469610 YP_003217148.1 CDS fchA NC_013316.1 804914 805546 D methenyltetrahydrofolate cyclohydrolase 804914..805546 Clostridium difficile R20291 8469731 YP_003217149.1 CDS folD NC_013316.1 805638 806510 D bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase 805638..806510 Clostridium difficile R20291 8469719 YP_003217150.1 CDS CDR20291_0648 NC_013316.1 806547 807221 D hypothetical protein 806547..807221 Clostridium difficile R20291 8469771 YP_003217151.1 CDS CDR20291_0649 NC_013316.1 807257 808138 D methylenetetrahydrofolate reductase 807257..808138 Clostridium difficile R20291 8467312 YP_003217152.1 CDS CDR20291_0650 NC_013316.1 808182 809567 D carbon monoxide dehydrogenase/acetyl-CoA synthase complex, dihydrolipoyl dehydrogenase subunit 808182..809567 Clostridium difficile R20291 8467313 YP_003217153.1 CDS CDR20291_0651 NC_013316.1 809623 810393 D carbon monoxide dehydrogenase/acetyl-CoA synthase complex, nickel-inserting subunit 809623..810393 Clostridium difficile R20291 8467314 YP_003217154.1 CDS CDR20291_0652 NC_013316.1 810413 811357 D part of a complex that catalyzes the cleavage of acetyl-CoA; acetyl-CoA decarbonylase/synthase complex subunit delta 810413..811357 Clostridium difficile R20291 8467315 YP_003217155.1 CDS CDR20291_0653 NC_013316.1 811388 812755 D part of a complex that catalyzes the cleavage of acetyl-CoA; acetyl-CoA decarbonylase/synthase complex subunit gamma 811388..812755 Clostridium difficile R20291 8467316 YP_003217156.1 CDS CDR20291_0654 NC_013316.1 812805 813611 D carbon monoxide dehydrogenase/acetyl-CoA synthase complex, methyltransferase subunit 812805..813611 Clostridium difficile R20291 8467317 YP_003217157.1 CDS CDR20291_0655 NC_013316.1 813668 815794 D in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex; bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta 813668..815794 Clostridium difficile R20291 8467318 YP_003217158.1 CDS gcvH NC_013316.1 815881 816258 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 815881..816258 Clostridium difficile R20291 8467319 YP_003217159.1 CDS CDR20291_0657 NC_013316.1 816304 818298 D iron-sulfur protein 816304..818298 Clostridium difficile R20291 8469802 YP_003217160.1 CDS CDR20291_0658 NC_013316.1 818323 819195 D radical SAM protein 818323..819195 Clostridium difficile R20291 8467320 YP_003217161.1 CDS CDR20291_0659 NC_013316.1 819180 820130 D radical SAM protein 819180..820130 Clostridium difficile R20291 8467321 YP_003217162.1 CDS CDR20291_0660 NC_013316.1 820177 820992 D biotin/lipoate-protein ligase 820177..820992 Clostridium difficile R20291 8467322 YP_003217163.1 CDS CDR20291_0661 NC_013316.1 821143 821334 D hypothetical protein 821143..821334 Clostridium difficile R20291 8467323 YP_003217164.1 CDS CDR20291_0662 NC_013316.1 821353 821769 D hypothetical protein 821353..821769 Clostridium difficile R20291 8467324 YP_003217165.1 CDS CDR20291_0663 NC_013316.1 821785 822135 D hypothetical protein 821785..822135 Clostridium difficile R20291 8467325 YP_003217166.1 CDS hisK NC_013316.1 822675 823454 D catalyzes the formation of L-histidinol from L-histidinol phosphate; histidinol-phosphatase 822675..823454 Clostridium difficile R20291 8467326 YP_003217167.1 CDS CDR20291_0665 NC_013316.1 823767 824648 R hypothetical protein complement(823767..824648) Clostridium difficile R20291 8469876 YP_003217168.1 CDS CDR20291_0666 NC_013316.1 825201 825713 D hypothetical protein 825201..825713 Clostridium difficile R20291 8467327 YP_003217169.1 CDS CDR20291_0668 NC_013316.1 826392 827489 R aminotransferase complement(826392..827489) Clostridium difficile R20291 8467329 YP_003217170.1 CDS glpK1 NC_013316.1 827782 829308 D glycerol kinase 827782..829308 Clostridium difficile R20291 8467330 YP_003217171.1 CDS CDR20291_0670 NC_013316.1 829349 830464 D ethanolamine transporter 829349..830464 Clostridium difficile R20291 8469816 YP_003217172.1 CDS CDR20291_0671 NC_013316.1 830745 831509 R DeoR family transcriptional regulator complement(830745..831509) Clostridium difficile R20291 8467331 YP_003217173.1 CDS CDR20291_0672 NC_013316.1 831946 832734 D chemotaxis protein 831946..832734 Clostridium difficile R20291 8467332 YP_003217174.1 CDS CDR20291_0673 NC_013316.1 832749 833495 D chemotaxis protein 832749..833495 Clostridium difficile R20291 8467333 YP_003217175.1 CDS CDR20291_0674 NC_013316.1 833673 834047 D hypothetical protein 833673..834047 Clostridium difficile R20291 8467334 YP_003217176.1 CDS CDR20291_0675 NC_013316.1 834139 835599 D lipoprotein 834139..835599 Clostridium difficile R20291 8467335 YP_003217177.1 CDS CDR20291_0676 NC_013316.1 835652 838528 D signaling protein 835652..838528 Clostridium difficile R20291 8467336 YP_003217178.1 CDS CDR20291_0677 NC_013316.1 838605 840671 D ATP-dependent DNA helicase 838605..840671 Clostridium difficile R20291 8467337 YP_003217179.1 CDS CDR20291_0678 NC_013316.1 841699 842514 D amino acid ABC transporter substrate-binding protein 841699..842514 Clostridium difficile R20291 8467338 YP_003217180.1 CDS CDR20291_0679 NC_013316.1 842542 843219 D amino acid ABC transporter permease 842542..843219 Clostridium difficile R20291 8467339 YP_003217181.1 CDS CDR20291_0680 NC_013316.1 843278 844000 D amino acid ABC transporter ATP-binding protein 843278..844000 Clostridium difficile R20291 8467340 YP_003217182.1 CDS iscS1 NC_013316.1 844648 845799 D cysteine desulfurase 844648..845799 Clostridium difficile R20291 8467341 YP_003217183.1 CDS thiI NC_013316.1 845845 847020 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 845845..847020 Clostridium difficile R20291 8469908 YP_003217184.1 CDS CDR20291_0683 NC_013316.1 847161 847979 D fimbrial protein 847161..847979 Clostridium difficile R20291 8470370 YP_003217185.1 CDS CDR20291_0684 NC_013316.1 848222 848863 D reductase 848222..848863 Clostridium difficile R20291 8467342 YP_003217186.1 CDS CDR20291_0685 NC_013316.1 850276 851946 D signaling protein 850276..851946 Clostridium difficile R20291 8467343 YP_003217187.1 CDS plfA NC_013316.1 852068 852802 R pyruvate formate-lyase activating enzyme complement(852068..852802) Clostridium difficile R20291 8467344 YP_003217188.1 CDS plfB NC_013316.1 852962 855193 R formate acetyltransferase complement(852962..855193) Clostridium difficile R20291 8470088 YP_003217189.1 CDS CDR20291_0688 NC_013316.1 855486 856547 D Ca2+/Na+ antiporter 855486..856547 Clostridium difficile R20291 8470089 YP_003217190.1 CDS CDR20291_0689 NC_013316.1 856638 858251 D ATP-dependent RNA helicase 856638..858251 Clostridium difficile R20291 8467345 YP_003217191.1 CDS CDR20291_0690 NC_013316.1 858526 860511 D transcription antiterminator 858526..860511 Clostridium difficile R20291 8467346 YP_003217192.1 CDS gutM NC_013316.1 860516 860950 D glucitol operon activator protein 860516..860950 Clostridium difficile R20291 8467347 YP_003217193.1 CDS gutA NC_013316.1 860979 861539 D PTS system glucitol/sorbitol-specific transporter subunit IIC2 860979..861539 Clostridium difficile R20291 8469854 YP_003217194.1 CDS srlE NC_013316.1 861603 861971 D PTS system glucitol/sorbitol-specific transporter subunit IIB 861603..861971 Clostridium difficile R20291 8469852 YP_003217195.1 CDS srlE' NC_013316.1 861996 862562 D PTS system glucitol/sorbitol-specific transporter subunit IIC 861996..862562 Clostridium difficile R20291 8470338 YP_003217196.1 CDS srlB NC_013316.1 862603 862968 D PTS system glucitol/sorbitol-specific transporter subunit IIA 862603..862968 Clostridium difficile R20291 8470340 YP_003217197.1 CDS gutD NC_013316.1 863063 863842 D catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 863063..863842 Clostridium difficile R20291 8470336 YP_003217198.1 CDS CDR20291_0697 NC_013316.1 864835 865953 D transposase-like protein b 864835..865953 Clostridium difficile R20291 8469853 YP_003217199.1 CDS CDR20291_0698 NC_013316.1 866179 868491 D formate dehydrogenase 866179..868491 Clostridium difficile R20291 8467348 YP_003217200.1 CDS spoIIAA NC_013316.1 868579 868914 D anti-sigma F factor antagonist 868579..868914 Clostridium difficile R20291 8467349 YP_003217201.1 CDS spoIIAB NC_013316.1 868928 869356 D binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 868928..869356 Clostridium difficile R20291 8470308 YP_003217202.1 CDS sigF NC_013316.1 869379 870143 D RNA polymerase sigma-F factor 869379..870143 Clostridium difficile R20291 8470309 YP_003217203.1 CDS spoVAC NC_013316.1 870423 870860 D stage V sporulation protein AC 870423..870860 Clostridium difficile R20291 8470278 YP_003217204.1 CDS spoVAD NC_013316.1 871014 872027 D stage V sporulation protein AD 871014..872027 Clostridium difficile R20291 8470328 YP_003217205.1 CDS spoVAE NC_013316.1 872041 872403 D stage V sporulation protein AE 872041..872403 Clostridium difficile R20291 8470329 YP_003217206.1 CDS CDR20291_0705 NC_013316.1 872586 873602 D LacI family transcriptional regulator 872586..873602 Clostridium difficile R20291 8470330 YP_003217207.1 CDS CDR20291_0706 NC_013316.1 873977 874819 D hypothetical protein 873977..874819 Clostridium difficile R20291 8467350 YP_003217208.1 CDS CDR20291_0707 NC_013316.1 874834 875298 D hypothetical protein 874834..875298 Clostridium difficile R20291 8467351 YP_003217209.1 CDS CDR20291_0708 NC_013316.1 875285 876457 D amidohydrolase 875285..876457 Clostridium difficile R20291 8467352 YP_003217210.1 CDS CDR20291_0709 NC_013316.1 876501 877436 D hypothetical protein 876501..877436 Clostridium difficile R20291 8467353 YP_003217211.1 CDS CDR20291_0710 NC_013316.1 877775 878176 D hypothetical protein 877775..878176 Clostridium difficile R20291 8467354 YP_003217212.1 CDS CDR20291_0711 NC_013316.1 878235 878699 R cytidine/deoxycytidylate deaminase family protein complement(878235..878699) Clostridium difficile R20291 8467355 YP_003217213.1 CDS CDR20291_0712 NC_013316.1 878932 881625 R penicillin-binding protein complement(878932..881625) Clostridium difficile R20291 8467356 YP_003217214.1 CDS CDR20291_0713 NC_013316.1 881839 882537 D hypothetical protein 881839..882537 Clostridium difficile R20291 8467357 YP_003217215.1 CDS CDR20291_0714 NC_013316.1 882749 883756 R stage IV sporulation protein complement(882749..883756) Clostridium difficile R20291 8467358 YP_003217216.1 CDS CDR20291_0715 NC_013316.1 883984 884868 D N-acetylmuramoyl-L-alanine amidase 883984..884868 Clostridium difficile R20291 8467359 YP_003217217.1 CDS CDR20291_0716 NC_013316.1 885040 886620 D ABC transporter ATP-binding protein 885040..886620 Clostridium difficile R20291 8467360 YP_003217218.1 CDS CDR20291_0717 NC_013316.1 886649 887284 D hypothetical protein 886649..887284 Clostridium difficile R20291 8467361 YP_003217219.1 CDS CDR20291_0718 NC_013316.1 887395 887655 R metal-binding protein complement(887395..887655) Clostridium difficile R20291 8467362 YP_003217220.1 CDS CDR20291_0719 NC_013316.1 887872 889155 D ATP/GTP-binding protein 887872..889155 Clostridium difficile R20291 8467363 YP_003217221.1 CDS CDR20291_0720 NC_013316.1 889163 889840 D hypothetical protein 889163..889840 Clostridium difficile R20291 8467364 YP_003217222.1 CDS CDR20291_0721 NC_013316.1 889926 890369 D NUDIX family hydrolase 889926..890369 Clostridium difficile R20291 8467365 YP_003217223.1 CDS CDR20291_0722 NC_013316.1 890651 891319 D hypothetical protein 890651..891319 Clostridium difficile R20291 8467366 YP_003217224.1 CDS CDR20291_0723 NC_013316.1 891405 891782 R hypothetical protein complement(891405..891782) Clostridium difficile R20291 8467367 YP_003217225.1 CDS CDR20291_0724 NC_013316.1 891782 892168 R hypothetical protein complement(891782..892168) Clostridium difficile R20291 8467368 YP_003217226.1 CDS nadE NC_013316.1 892347 893102 D NH3-dependent NAD(+) synthetase 892347..893102 Clostridium difficile R20291 8467369 YP_003217227.1 CDS CDR20291_0726 NC_013316.1 893185 893904 D hypothetical protein 893185..893904 Clostridium difficile R20291 8470009 YP_003217228.1 CDS CDR20291_0727 NC_013316.1 894072 895076 R LacI family transcriptional regulator complement(894072..895076) Clostridium difficile R20291 8467370 YP_003217229.1 CDS CDR20291_0728 NC_013316.1 895342 896238 D hydroxymethylglutaryl-CoA lyase 895342..896238 Clostridium difficile R20291 8467371 YP_003217230.1 CDS CDR20291_0729 NC_013316.1 896283 897638 D hypothetical protein 896283..897638 Clostridium difficile R20291 8467372 YP_003217231.1 CDS act NC_013316.1 897714 898907 D beta-alanine CoA-transferase 897714..898907 Clostridium difficile R20291 8467373 YP_003217232.1 CDS crt1 NC_013316.1 899515 900330 D 3-hydroxybutyryl-CoA dehydratase 899515..900330 Clostridium difficile R20291 8469473 YP_003217233.1 CDS CDR20291_0732 NC_013316.1 900424 901764 D permease 900424..901764 Clostridium difficile R20291 8469618 YP_003217234.1 CDS CDR20291_0733 NC_013316.1 901901 903133 D CoA-transferase 901901..903133 Clostridium difficile R20291 8467374 YP_003217235.1 CDS CDR20291_0734 NC_013316.1 903173 904315 D acyl-CoA dehydrogenase 903173..904315 Clostridium difficile R20291 8467375 YP_003217236.1 CDS CDR20291_0735 NC_013316.1 904326 905120 D electron transfer flavoprotein subunit beta 904326..905120 Clostridium difficile R20291 8467376 YP_003217237.1 CDS CDR20291_0736 NC_013316.1 905131 906153 D electron transfer flavoprotein subunit alpha 905131..906153 Clostridium difficile R20291 8467377 YP_003217238.1 CDS CDR20291_0737 NC_013316.1 906252 907628 D sigma-54-dependent transcriptional regulator 906252..907628 Clostridium difficile R20291 8467378 YP_003217239.1 CDS CDR20291_0738 NC_013316.1 907960 908304 R hypothetical protein complement(907960..908304) Clostridium difficile R20291 8467379 YP_003217240.1 CDS CDR20291_0739 NC_013316.1 908473 908709 R hypothetical protein complement(908473..908709) Clostridium difficile R20291 8467380 YP_003217241.1 CDS CDR20291_0740 NC_013316.1 908792 909802 D hypothetical protein 908792..909802 Clostridium difficile R20291 8467381 YP_003217242.1 CDS floX NC_013316.1 909896 910426 D flavodoxin 909896..910426 Clostridium difficile R20291 8467382 YP_003217243.1 CDS CDR20291_0742 NC_013316.1 910602 912530 D signaling protein 910602..912530 Clostridium difficile R20291 8469767 YP_003217244.1 CDS CDR20291_0743 NC_013316.1 912705 913115 D universal stress protein 912705..913115 Clostridium difficile R20291 8467383 YP_003217245.1 CDS CDR20291_0744 NC_013316.1 913137 913439 D PTS system, IIb component 913137..913439 Clostridium difficile R20291 8467384 YP_003217246.1 CDS CDR20291_0745 NC_013316.1 913655 914347 R GntR family transcriptional regulator complement(913655..914347) Clostridium difficile R20291 8467385 YP_003217247.1 CDS CDR20291_0746 NC_013316.1 914373 915572 R transporter complement(914373..915572) Clostridium difficile R20291 8467386 YP_003217248.1 CDS CDR20291_0747 NC_013316.1 915896 917773 D PTS system transporter subunit IIABC 915896..917773 Clostridium difficile R20291 8467387 YP_003217249.1 CDS CDR20291_0748 NC_013316.1 918085 919491 D 6-phospho-beta-glucosidase 918085..919491 Clostridium difficile R20291 8467388 YP_003217250.1 CDS CDR20291_0749 NC_013316.1 919519 920367 D transcription antiterminator 919519..920367 Clostridium difficile R20291 8467389 YP_003217251.1 CDS CDR20291_0750 NC_013316.1 921004 921720 D two-component response regulator 921004..921720 Clostridium difficile R20291 8467390 YP_003217252.1 CDS CDR20291_0751 NC_013316.1 921717 922652 D two-component sensor histidine kinase 921717..922652 Clostridium difficile R20291 8467391 YP_003217253.1 CDS CDR20291_0752 NC_013316.1 922800 923723 D lantibiotic ABC transporter ATP-binding protein 922800..923723 Clostridium difficile R20291 8467392 YP_003217254.1 CDS CDR20291_0753 NC_013316.1 923707 924477 D lantibiotic ABC transporter permease 923707..924477 Clostridium difficile R20291 8467393 YP_003217255.1 CDS CDR20291_0754 NC_013316.1 924487 925269 D lantibiotic ABC transporter permease 924487..925269 Clostridium difficile R20291 8467394 YP_003217256.1 CDS rbr NC_013316.1 925646 926182 D rubrerythrin 925646..926182 Clostridium difficile R20291 8467395 YP_003217257.1 CDS CDR20291_0756 NC_013316.1 926214 926603 D oxidative stress regulatory protein 926214..926603 Clostridium difficile R20291 8470153 YP_003217258.1 CDS rbo NC_013316.1 926640 927026 D rubredoxin oxidoreductase 926640..927026 Clostridium difficile R20291 8467396 YP_003217259.1 CDS CDR20291_0758 NC_013316.1 927153 928595 D oxidative stress protein 927153..928595 Clostridium difficile R20291 8470152 YP_003217260.1 CDS CDR20291_0759 NC_013316.1 928892 929707 D metallo-beta-lactamase 928892..929707 Clostridium difficile R20291 8467397 YP_003217261.1 CDS CDR20291_0760 NC_013316.1 930308 931492 D hypothetical protein 930308..931492 Clostridium difficile R20291 8467398 YP_003217262.1 CDS CDR20291_0761 NC_013316.1 931869 932996 R ATP-dependent RNA helicase complement(931869..932996) Clostridium difficile R20291 8467399 YP_003217263.1 CDS aksA NC_013316.1 933441 934634 D in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis; trans-homoaconitate synthase 933441..934634 Clostridium difficile R20291 8467400 YP_003217264.1 CDS CDR20291_0763 NC_013316.1 934659 936584 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 934659..936584 Clostridium difficile R20291 8467401 YP_003217265.1 CDS CDR20291_0764 NC_013316.1 936606 937601 D isocitrate/3-isopropylmalate dehydrogenase 936606..937601 Clostridium difficile R20291 8467402 YP_003217266.1 CDS CDR20291_0765 NC_013316.1 937928 938401 D MarR family transcriptional regulator 937928..938401 Clostridium difficile R20291 8467403 YP_003217267.1 CDS CDR20291_0766 NC_013316.1 938435 938929 D acetyltransferase 938435..938929 Clostridium difficile R20291 8467404 YP_003217268.1 CDS CDR20291_0767 NC_013316.1 939008 939547 D reductase 939008..939547 Clostridium difficile R20291 8467405 YP_003217269.1 CDS CDR20291_0768 NC_013316.1 939736 940047 D DNA-binding protein 939736..940047 Clostridium difficile R20291 8467406 YP_003217270.1 CDS CDR20291_0769 NC_013316.1 940075 940761 D membrane-associated CAAX amino terminal protease 940075..940761 Clostridium difficile R20291 8467407 YP_003217271.1 CDS CDR20291_0770 NC_013316.1 940993 941877 D hydrolase 940993..941877 Clostridium difficile R20291 8467408 YP_003217272.1 CDS CDR20291_0771 NC_013316.1 941976 943151 D Catalyzes the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate; 5-aminoimidazole-4-carboxamide ribonucleotide transformylase 941976..943151 Clostridium difficile R20291 8467409 YP_003217273.1 CDS CDR20291_0772 NC_013316.1 943279 944133 D hypothetical protein 943279..944133 Clostridium difficile R20291 8467410 YP_003217274.1 CDS CDR20291_0773 NC_013316.1 944177 945412 D glycosyl transferase 944177..945412 Clostridium difficile R20291 8467411 YP_003217275.1 CDS CDR20291_0774 NC_013316.1 945513 946454 D cell surface protein 945513..946454 Clostridium difficile R20291 8467412 YP_003217276.1 CDS CDR20291_0775 NC_013316.1 946683 947036 R nuclease complement(946683..947036) Clostridium difficile R20291 8467413 YP_003217277.1 CDS CDR20291_0776 NC_013316.1 947323 948243 D hypothetical protein 947323..948243 Clostridium difficile R20291 8467414 YP_003217278.1 CDS CDR20291_0777 NC_013316.1 948473 948937 D hypothetical protein 948473..948937 Clostridium difficile R20291 8467415 YP_003217279.1 CDS CDR20291_0778 NC_013316.1 948960 950495 D hypothetical protein 948960..950495 Clostridium difficile R20291 8467416 YP_003217280.1 CDS abgB2 NC_013316.1 950579 951946 D aminobenzoyl-glutamate utilization protein 950579..951946 Clostridium difficile R20291 8467417 YP_003217281.1 CDS CDR20291_0780 NC_013316.1 951981 952205 D hypothetical protein 951981..952205 Clostridium difficile R20291 8469455 YP_003217282.1 CDS CDR20291_0781 NC_013316.1 952655 953053 R hypothetical protein complement(952655..953053) Clostridium difficile R20291 8467418 YP_003217283.1 CDS CDR20291_0782 NC_013316.1 953056 953499 R MarR family transcriptional regulator complement(953056..953499) Clostridium difficile R20291 8467419 YP_003217284.1 CDS oppB NC_013316.1 953771 954802 D oligopeptide ABC transporter permease 953771..954802 Clostridium difficile R20291 8467420 YP_003217285.1 CDS oppC NC_013316.1 954777 955697 D oligopeptide ABC transporter permease 954777..955697 Clostridium difficile R20291 8470039 YP_003217286.1 CDS oppA NC_013316.1 955810 957378 D oligopeptide ABC transporter substrate-binding protein 955810..957378 Clostridium difficile R20291 8470040 YP_003217287.1 CDS oppD NC_013316.1 957453 958478 D oligopeptide ABC transporter ATP-binding protein 957453..958478 Clostridium difficile R20291 8470038 YP_003217288.1 CDS oppF NC_013316.1 958471 959415 D oligopeptide ABC transporter ATP-binding protein 958471..959415 Clostridium difficile R20291 8470041 YP_003217289.1 CDS CDR20291_0788 NC_013316.1 959774 962429 D sigma-54 factor, interaction domain-containing protein,transcriptional regulatory protein levr join(959774..961411,961413..962429) Clostridium difficile R20291 8470042 YP_003217290.1 CDS CDR20291_0789 NC_013316.1 962644 963273 D hypothetical protein 962644..963273 Clostridium difficile R20291 8467421 YP_003217291.1 CDS CDR20291_0790 NC_013316.1 963408 963734 D PTS system transporter subunit IIB 963408..963734 Clostridium difficile R20291 8467422 YP_003217292.1 CDS CDR20291_0791 NC_013316.1 963750 965039 D PTS system transporter subunit IIC 963750..965039 Clostridium difficile R20291 8467423 YP_003217293.1 CDS CDR20291_0792 NC_013316.1 965063 965392 D PTS system transporter subunit IIA 965063..965392 Clostridium difficile R20291 8467424 YP_003217294.1 CDS CDR20291_0793 NC_013316.1 965540 966868 D 6-phospho-alpha-glucosidase 965540..966868 Clostridium difficile R20291 8467425 YP_003217295.1 CDS CDR20291_0794 NC_013316.1 967185 968045 D hypothetical protein 967185..968045 Clostridium difficile R20291 8467426 YP_003217296.1 CDS CDR20291_0795 NC_013316.1 968250 969230 D hypothetical protein 968250..969230 Clostridium difficile R20291 8467427 YP_003217297.1 CDS CDR20291_0796 NC_013316.1 969433 969882 D hypothetical protein 969433..969882 Clostridium difficile R20291 8467428 YP_003217298.1 CDS CDR20291_0797 NC_013316.1 970043 970972 R hypothetical protein complement(970043..970972) Clostridium difficile R20291 8467429 YP_003217299.1 CDS modA NC_013316.1 971132 971977 D molybdenum ABC transporter substrate-binding protein 971132..971977 Clostridium difficile R20291 8467430 YP_003217300.1 CDS modB NC_013316.1 972060 972809 D molybdenum ABC transporter permease 972060..972809 Clostridium difficile R20291 8469975 YP_003217301.1 CDS modC NC_013316.1 972822 973886 D molybdenum ABC transporter ATP-binding protein 972822..973886 Clostridium difficile R20291 8469976 YP_003217302.1 CDS maa NC_013316.1 973892 974449 D maltose O-acetyltransferase 973892..974449 Clostridium difficile R20291 8469978 YP_003217303.1 CDS CDR20291_0802 NC_013316.1 974613 975635 R ABC transporter substrate-binding protein complement(974613..975635) Clostridium difficile R20291 8469947 YP_003217304.1 CDS CDR20291_0803 NC_013316.1 975766 976521 R ABC transporter ATP-binding protein complement(975766..976521) Clostridium difficile R20291 8467431 YP_003217305.1 CDS CDR20291_0804 NC_013316.1 976522 977409 R ABC transporter permease complement(976522..977409) Clostridium difficile R20291 8467432 YP_003217306.1 CDS CDR20291_0805 NC_013316.1 978218 979255 R ABC transporter substrate-binding protein complement(978218..979255) Clostridium difficile R20291 8467433 YP_003217307.1 CDS CDR20291_0806 NC_013316.1 979352 980107 R ABC transporter ATP-binding protein complement(979352..980107) Clostridium difficile R20291 8467434 YP_003217308.1 CDS CDR20291_0807 NC_013316.1 980108 980995 R ABC transporter permease complement(980108..980995) Clostridium difficile R20291 8467435 YP_003217309.1 CDS CDR20291_0808 NC_013316.1 981793 983373 D carbohydrate kinase 981793..983373 Clostridium difficile R20291 8467436 YP_003217310.1 CDS tlpB NC_013316.1 984119 985237 D transposase-like protein B 984119..985237 Clostridium difficile R20291 8467437 YP_003217311.1 CDS CDR20291_0810 NC_013316.1 985428 985967 D hypothetical protein 985428..985967 Clostridium difficile R20291 8470384 YP_003217312.1 CDS CDR20291_0811 NC_013316.1 985988 987031 D hypothetical protein 985988..987031 Clostridium difficile R20291 8467438 YP_003217313.1 CDS glgC NC_013316.1 987802 988962 D glucose-1-phosphate adenylyltransferase 987802..988962 Clostridium difficile R20291 8467439 YP_003217314.1 CDS glgD NC_013316.1 988964 990094 D glycogen biosynthesis protein 988964..990094 Clostridium difficile R20291 8469807 YP_003217315.1 CDS glgA NC_013316.1 990123 991565 D glycogen synthase 990123..991565 Clostridium difficile R20291 8469808 YP_003217316.1 CDS glgP NC_013316.1 991558 993999 D glycogen phosphorylase 991558..993999 Clostridium difficile R20291 8469806 YP_003217317.1 CDS CDR20291_0816 NC_013316.1 994004 995869 D alpha-amylase 994004..995869 Clostridium difficile R20291 8469809 YP_003217318.1 CDS CDR20291_0817 NC_013316.1 996099 996767 D GntR family transcriptional regulator 996099..996767 Clostridium difficile R20291 8467440 YP_003217319.1 CDS speA NC_013316.1 997405 998880 D arginine decarboxylase 997405..998880 Clostridium difficile R20291 8467441 YP_003217320.1 CDS speD NC_013316.1 998967 999380 D S-adenosylmethionine decarboxylase proenzyme 998967..999380 Clostridium difficile R20291 8470298 YP_003217321.1 CDS speE NC_013316.1 999410 1000261 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 999410..1000261 Clostridium difficile R20291 8470301 YP_003217322.1 CDS speB NC_013316.1 1000272 1001129 D agmatinase 1000272..1001129 Clostridium difficile R20291 8470302 YP_003217323.1 CDS cspA NC_013316.1 1001309 1001509 R cold shock protein complement(1001309..1001509) Clostridium difficile R20291 8470300 YP_003217324.1 CDS CDR20291_0823 NC_013316.1 1001937 1003466 D iron-dependent hydrogenase 1001937..1003466 Clostridium difficile R20291 8469621 YP_003217325.1 CDS CDR20291_0824 NC_013316.1 1003724 1005220 D iron-dependent hydrogenase 1003724..1005220 Clostridium difficile R20291 8467442 YP_003217326.1 CDS CDR20291_0825 NC_013316.1 1005354 1008152 D metallo-beta-lactamase join(1005354..1005701,1007526..1008152) Clostridium difficile R20291 8467443 YP_003217327.1 CDS tlpB NC_013316.1 1006343 1007461 D transposase-like protein B 1006343..1007461 Clostridium difficile R20291 8467444 YP_003217328.1 CDS CDR20291_0827 NC_013316.1 1008685 1009035 D hypothetical protein 1008685..1009035 Clostridium difficile R20291 8470385 YP_003217329.1 CDS CDR20291_0828 NC_013316.1 1009297 1010802 D hypothetical protein 1009297..1010802 Clostridium difficile R20291 8467445 YP_003217330.1 CDS dinB NC_013316.1 1011192 1012289 D DNA polymerase IV 1011192..1012289 Clostridium difficile R20291 8467446 YP_003217331.1 CDS opuCA NC_013316.1 1012545 1013681 D glycine/betaine/carnitine/choline ABC transporter ATP-binding protein 1012545..1013681 Clostridium difficile R20291 8469663 YP_003217332.1 CDS opuCC NC_013316.1 1013668 1015221 D glycine betaine/carnitine/choline ABC transporter substrate-binding protein 1013668..1015221 Clostridium difficile R20291 8470043 YP_003217333.1 CDS CDR20291_0832 NC_013316.1 1015555 1016421 D cation efflux rotein 1015555..1016421 Clostridium difficile R20291 8470044 YP_003217334.1 CDS CDR20291_0833 NC_013316.1 1016562 1017704 D oxidoreductase; aldo/keto reductase 1016562..1017704 Clostridium difficile R20291 8467447 YP_003217335.1 CDS CDR20291_0834 NC_013316.1 1018088 1019326 D hypothetical protein 1018088..1019326 Clostridium difficile R20291 8467448 YP_003217336.1 CDS CDR20291_0835 NC_013316.1 1019355 1020242 D catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase 1019355..1020242 Clostridium difficile R20291 8467449 YP_003217337.1 CDS CDR20291_0836 NC_013316.1 1020276 1020905 D hydrolase 1020276..1020905 Clostridium difficile R20291 8467450 YP_003217338.1 CDS CDR20291_0837 NC_013316.1 1020910 1021374 D hypothetical protein 1020910..1021374 Clostridium difficile R20291 8467451 YP_003217339.1 CDS CDR20291_0838 NC_013316.1 1021624 1022991 D drug/sodium antiporter 1021624..1022991 Clostridium difficile R20291 8467452 YP_003217340.1 CDS CDR20291_0839 NC_013316.1 1023191 1024465 D 30S ribosomal protein S1 1023191..1024465 Clostridium difficile R20291 8467453 YP_003217341.1 CDS CDR20291_0840 NC_013316.1 1024583 1025302 D hydrolase 1024583..1025302 Clostridium difficile R20291 8467454 YP_003217342.1 CDS CDR20291_0841 NC_013316.1 1025347 1025769 D hypothetical protein 1025347..1025769 Clostridium difficile R20291 8467455 YP_003217343.1 CDS leuA NC_013316.1 1026287 1028029 D 2-isopropylmalate synthase 1026287..1028029 Clostridium difficile R20291 8467456 YP_003217344.1 CDS leuC NC_013316.1 1028169 1029263 D 3-isopropylmalate dehydratase large subunit 1028169..1029263 Clostridium difficile R20291 8469931 YP_003217345.1 CDS leuD NC_013316.1 1029278 1029769 D 3-isopropylmalate dehydratase small subunit 1029278..1029769 Clostridium difficile R20291 8469933 YP_003217346.1 CDS leuB NC_013316.1 1029776 1030846 D 3-isopropylmalate dehydrogenase 1029776..1030846 Clostridium difficile R20291 8469934 YP_003217347.1 CDS CDR20291_0846 NC_013316.1 1031209 1031724 D thioesterase 1031209..1031724 Clostridium difficile R20291 8469932 YP_003217348.1 CDS CDR20291_0847 NC_013316.1 1032097 1033173 D aminotransferase 1032097..1033173 Clostridium difficile R20291 8467457 YP_003217349.1 CDS serA NC_013316.1 1033413 1034354 D D-3-phosphoglycerate dehydrogenase 1033413..1034354 Clostridium difficile R20291 8467458 YP_003217350.1 CDS CDR20291_0849 NC_013316.1 1034386 1035636 D hypothetical protein 1034386..1035636 Clostridium difficile R20291 8470273 YP_003217351.1 CDS CDR20291_0850 NC_013316.1 1036454 1040002 D signaling protein 1036454..1040002 Clostridium difficile R20291 8467459 YP_003217352.1 CDS CDR20291_0851 NC_013316.1 1040187 1042121 D hypothetical protein 1040187..1042121 Clostridium difficile R20291 8467460 YP_003217353.1 CDS CDR20291_0852 NC_013316.1 1042227 1043222 D ABC transporter substrate-binding protein 1042227..1043222 Clostridium difficile R20291 8467461 YP_003217354.1 CDS CDR20291_0853 NC_013316.1 1043194 1043979 D ABC transporter permease 1043194..1043979 Clostridium difficile R20291 8467462 YP_003217355.1 CDS CDR20291_0854 NC_013316.1 1043967 1044665 D ABC transporter ATP-binding protein 1043967..1044665 Clostridium difficile R20291 8467463 YP_003217356.1 CDS CDR20291_0855 NC_013316.1 1044788 1045261 D regulatory protein 1044788..1045261 Clostridium difficile R20291 8467464 YP_003217357.1 CDS fumA NC_013316.1 1045458 1046297 D Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 1045458..1046297 Clostridium difficile R20291 8467465 YP_003217358.1 CDS fumB NC_013316.1 1046310 1046858 D fumarate hydratase subunit B 1046310..1046858 Clostridium difficile R20291 8469783 YP_003217359.1 CDS CDR20291_0858 NC_013316.1 1046924 1048105 D NAD-dependent malic enzyme 1046924..1048105 Clostridium difficile R20291 8469784 YP_003217360.1 CDS CDR20291_0859 NC_013316.1 1048278 1048541 D hypothetical protein 1048278..1048541 Clostridium difficile R20291 8467466 YP_003217361.1 CDS CDR20291_0860 NC_013316.1 1049067 1049750 D hypothetical protein 1049067..1049750 Clostridium difficile R20291 8467467 YP_003217362.1 CDS CDR20291_0861 NC_013316.1 1049761 1051002 D sensor protein 1049761..1051002 Clostridium difficile R20291 8467468 YP_003217363.1 CDS CDR20291_0862 NC_013316.1 1051074 1051757 D ABC transporter ATPase 1051074..1051757 Clostridium difficile R20291 8467469 YP_003217364.1 CDS CDR20291_0863 NC_013316.1 1051754 1054084 D hypothetical protein 1051754..1054084 Clostridium difficile R20291 8467470 YP_003217365.1 CDS CDR20291_0864 NC_013316.1 1054265 1055107 R hypothetical protein complement(1054265..1055107) Clostridium difficile R20291 8467471 YP_003217366.1 CDS CDR20291_0865 NC_013316.1 1055402 1056136 D GntR family transcriptional regulator 1055402..1056136 Clostridium difficile R20291 8467472 YP_003217367.1 CDS nagA NC_013316.1 1056146 1057279 D N-acetylglucosamine-6-phosphate deacetylase 1056146..1057279 Clostridium difficile R20291 8467473 YP_003217368.1 CDS glmD NC_013316.1 1057378 1058127 D glucosamine-6-phosphate deaminase 1057378..1058127 Clostridium difficile R20291 8470010 YP_003217369.1 CDS CDR20291_0868 NC_013316.1 1058259 1058741 R hypothetical protein complement(1058259..1058741) Clostridium difficile R20291 8469810 YP_003217370.1 CDS CDR20291_0869 NC_013316.1 1059234 1059938 D two-component system response regulator 1059234..1059938 Clostridium difficile R20291 8467474 YP_003217371.1 CDS CDR20291_0870 NC_013316.1 1059940 1061427 D two-component system sensor histidine kinase 1059940..1061427 Clostridium difficile R20291 8467475 YP_003217372.1 CDS CDR20291_0871 NC_013316.1 1061632 1063245 D signaling protein 1061632..1063245 Clostridium difficile R20291 8467476 YP_003217373.1 CDS CDR20291_0872 NC_013316.1 1063935 1064765 R MerR family transcriptional regulator complement(1063935..1064765) Clostridium difficile R20291 8467477 YP_003217374.1 CDS CDR20291_0873 NC_013316.1 1064838 1066565 D ABC transporter ATP-binding protein/permease 1064838..1066565 Clostridium difficile R20291 8467478 YP_003217375.1 CDS CDR20291_0874 NC_013316.1 1066602 1068464 D ABC transporter ATP-binding protein/permease 1066602..1068464 Clostridium difficile R20291 8467479 YP_003217376.1 CDS CDR20291_0875 NC_013316.1 1068797 1069486 D hypothetical protein 1068797..1069486 Clostridium difficile R20291 8467480 YP_003217377.1 CDS CDR20291_0876 NC_013316.1 1069591 1070277 D hypothetical protein 1069591..1070277 Clostridium difficile R20291 8467481 YP_003217378.1 CDS CDR20291_0877 NC_013316.1 1070294 1072201 D hypothetical protein 1070294..1072201 Clostridium difficile R20291 8467482 YP_003217379.1 CDS CDR20291_0878 NC_013316.1 1072654 1073343 D hypothetical protein 1072654..1073343 Clostridium difficile R20291 8467483 YP_003217380.1 CDS CDR20291_0879 NC_013316.1 1073779 1074318 D transcriptional regulator 1073779..1074318 Clostridium difficile R20291 8467484 YP_003217381.1 CDS potA NC_013316.1 1074337 1075380 D spermidine/putrescine ABC transporter ATP-binding protein 1074337..1075380 Clostridium difficile R20291 8467485 YP_003217382.1 CDS potB NC_013316.1 1075382 1076218 D spermidine/putrescine ABC transporter permease 1075382..1076218 Clostridium difficile R20291 8470093 YP_003217383.1 CDS potC NC_013316.1 1076323 1076997 D spermidine/putrescine ABC transporter permease 1076323..1076997 Clostridium difficile R20291 8470094 YP_003217384.1 CDS potD NC_013316.1 1076997 1078049 D spermidine/putrescine ABC transporter substrate-binding protein 1076997..1078049 Clostridium difficile R20291 8470095 YP_003217385.1 CDS CDR20291_0884 NC_013316.1 1078493 1079341 D signaling protein 1078493..1079341 Clostridium difficile R20291 8470096 YP_003217386.1 CDS CDR20291_0885 NC_013316.1 1079334 1080995 D cell wall anchored protein 1079334..1080995 Clostridium difficile R20291 8467486 YP_003217387.1 CDS CDR20291_0886 NC_013316.1 1081044 1082300 D glycosyl transferase 1081044..1082300 Clostridium difficile R20291 8467487 YP_003217388.1 CDS CDR20291_0887 NC_013316.1 1082323 1084404 D cell wall anchored protein 1082323..1084404 Clostridium difficile R20291 8467488 YP_003217389.1 CDS mnaA NC_013316.1 1085580 1086704 D UDP-N-acetylglucosamine 2-epimerase 1085580..1086704 Clostridium difficile R20291 8467490 YP_003217390.1 CDS CDR20291_0890 NC_013316.1 1086782 1087756 D mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 1086782..1087756 Clostridium difficile R20291 8469970 YP_003217391.1 CDS CDR20291_0891 NC_013316.1 1093266 1095305 D N-acetylmuramoyl-L-alanine amidase 1093266..1095305 Clostridium difficile R20291 8469448 YP_003217392.1 CDS CDR20291_0892 NC_013316.1 1095797 1097830 D N-acetylmuramoyl-L-alanine amidase 1095797..1097830 Clostridium difficile R20291 8467492 YP_003217393.1 CDS CDR20291_0893 NC_013316.1 1098058 1099971 D hypothetical protein 1098058..1099971 Clostridium difficile R20291 8467493 YP_003217394.1 CDS CDR20291_0894 NC_013316.1 1099964 1102183 D helicase 1099964..1102183 Clostridium difficile R20291 8467494 YP_003217395.1 CDS CDR20291_0895 NC_013316.1 1102292 1103122 D hypothetical protein 1102292..1103122 Clostridium difficile R20291 8467495 YP_003217396.1 CDS addB NC_013316.1 1103112 1106579 D ATP-dependent nuclease subunit B 1103112..1106579 Clostridium difficile R20291 8467496 YP_003217397.1 CDS addA NC_013316.1 1106579 1110406 D ATP-dependent nuclease subunit A 1106579..1110406 Clostridium difficile R20291 8469476 YP_003217398.1 CDS sbcD NC_013316.1 1110452 1111663 D nuclease subunit D 1110452..1111663 Clostridium difficile R20291 8469475 YP_003217399.1 CDS sbcC NC_013316.1 1111638 1115177 D exonuclease subunit C 1111638..1115177 Clostridium difficile R20291 8470260 YP_003217400.1 CDS CDR20291_0900 NC_013316.1 1115308 1116561 D modulator of ions transport 1115308..1116561 Clostridium difficile R20291 8470259 YP_003217401.1 CDS pepT NC_013316.1 1117852 1119078 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1117852..1119078 Clostridium difficile R20291 8467498 YP_003217402.1 CDS CDR20291_0903 NC_013316.1 1119336 1120337 D cell surface protein 1119336..1120337 Clostridium difficile R20291 8470064 YP_003217403.1 CDS CDR20291_0904 NC_013316.1 1120755 1121324 R phosphodiesterase complement(1120755..1121324) Clostridium difficile R20291 8467499 YP_003217404.1 CDS CDR20291_0905 NC_013316.1 1121349 1122149 R inorganic polyphosphate/ATP-NAD kinase complement(1121349..1122149) Clostridium difficile R20291 8467500 YP_003217405.1 CDS CDR20291_0906 NC_013316.1 1122251 1123156 D ABC transporter ATP-binding protein 1122251..1123156 Clostridium difficile R20291 8467501 YP_003217406.1 CDS CDR20291_0907 NC_013316.1 1123144 1123830 D ABC transporter permease 1123144..1123830 Clostridium difficile R20291 8467502 YP_003217407.1 CDS CDR20291_0908 NC_013316.1 1123882 1124424 D hypothetical protein 1123882..1124424 Clostridium difficile R20291 8467503 YP_003217408.1 CDS CDR20291_0909 NC_013316.1 1124503 1124970 D regulatory protein 1124503..1124970 Clostridium difficile R20291 8467504 YP_003217409.1 CDS bcd2 NC_013316.1 1125678 1126814 D butyryl-CoA dehydrogenase 1125678..1126814 Clostridium difficile R20291 8467505 YP_003217410.1 CDS etfB2 NC_013316.1 1126858 1127655 D electron transfer flavoprotein subunit beta 1126858..1127655 Clostridium difficile R20291 8469537 YP_003217411.1 CDS etfA2 NC_013316.1 1127674 1128684 D electron transfer flavoprotein subunit alpha 1127674..1128684 Clostridium difficile R20291 8469697 YP_003217412.1 CDS crt2 NC_013316.1 1128703 1129500 D 3-hydroxybutyryl-CoA dehydratase 1128703..1129500 Clostridium difficile R20291 8469694 YP_003217413.1 CDS hbd NC_013316.1 1129598 1130443 D 3-hydroxybutyryl-CoA dehydrogenase 1129598..1130443 Clostridium difficile R20291 8469619 YP_003217414.1 CDS thlA1 NC_013316.1 1130515 1131705 D acetyl-CoA acetyltransferase 1130515..1131705 Clostridium difficile R20291 8469859 YP_003217415.1 CDS CDR20291_0916 NC_013316.1 1131957 1132802 D pseudouridylate synthase 1131957..1132802 Clostridium difficile R20291 8470373 YP_003217416.1 CDS CDR20291_0917 NC_013316.1 1132816 1133820 D hypothetical protein 1132816..1133820 Clostridium difficile R20291 8467506 YP_003217417.1 CDS acpP NC_013316.1 1133964 1134191 R acyl carrier protein complement(1133964..1134191) Clostridium difficile R20291 8467507 YP_003217418.1 CDS CDR20291_0919 NC_013316.1 1134363 1134788 D hypothetical protein 1134363..1134788 Clostridium difficile R20291 8469469 YP_003217419.1 CDS CDR20291_0920 NC_013316.1 1134836 1135042 D hypothetical protein 1134836..1135042 Clostridium difficile R20291 8467508 YP_003217420.1 CDS CDR20291_0921 NC_013316.1 1135224 1135403 D hypothetical protein 1135224..1135403 Clostridium difficile R20291 8467509 YP_003217421.1 CDS CDR20291_0922 NC_013316.1 1135437 1135637 D hypothetical protein 1135437..1135637 Clostridium difficile R20291 8467510 YP_003217422.1 CDS ccpA NC_013316.1 1135884 1136906 D LacI family transcriptional regulator 1135884..1136906 Clostridium difficile R20291 8467511 YP_003217423.1 CDS CDR20291_0924 NC_013316.1 1137029 1137469 R hypothetical protein complement(1137029..1137469) Clostridium difficile R20291 8469577 YP_003217424.1 CDS CDR20291_0925 NC_013316.1 1137639 1138544 D hypothetical protein 1137639..1138544 Clostridium difficile R20291 8467512 YP_003217425.1 CDS CDR20291_0926 NC_013316.1 1139022 1140239 D hypothetical protein 1139022..1140239 Clostridium difficile R20291 8467513 YP_003217426.1 CDS CDR20291_0927 NC_013316.1 1140340 1141671 R polysaccharide biosynthesis/sporulation protein complement(1140340..1141671) Clostridium difficile R20291 8467514 YP_003217427.1 CDS CDR20291_0928 NC_013316.1 1141713 1142507 R phosphatase complement(1141713..1142507) Clostridium difficile R20291 8467515 YP_003217428.1 CDS CDR20291_0929 NC_013316.1 1142608 1144062 D aminotransferase 1142608..1144062 Clostridium difficile R20291 8467516 YP_003217429.1 CDS CDR20291_0930 NC_013316.1 1144091 1144300 D hypothetical protein 1144091..1144300 Clostridium difficile R20291 8467517 YP_003217430.1 CDS CDR20291_0931 NC_013316.1 1144320 1145714 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 1144320..1145714 Clostridium difficile R20291 8467518 YP_003217431.1 CDS CDR20291_0932 NC_013316.1 1145930 1146706 D GntR family transcriptional regulator 1145930..1146706 Clostridium difficile R20291 8467519 YP_003217432.1 CDS CDR20291_0933 NC_013316.1 1146732 1147145 D PTS system transporter subunit IIA 1146732..1147145 Clostridium difficile R20291 8467520 YP_003217433.1 CDS CDR20291_0934 NC_013316.1 1147149 1147892 D hypothetical protein 1147149..1147892 Clostridium difficile R20291 8467521 YP_003217434.1 CDS CDR20291_0935 NC_013316.1 1147892 1148362 D PTS system transporter subunit IIB 1147892..1148362 Clostridium difficile R20291 8467522 YP_003217435.1 CDS CDR20291_0936 NC_013316.1 1148373 1149137 D PTS system transporter subunit IIC 1148373..1149137 Clostridium difficile R20291 8467523 YP_003217436.1 CDS CDR20291_0937 NC_013316.1 1149121 1149963 D PTS system transporter subunit IID 1149121..1149963 Clostridium difficile R20291 8467524 YP_003217437.1 CDS CDR20291_0938 NC_013316.1 1150123 1151028 R LysR family transcriptional regulator complement(1150123..1151028) Clostridium difficile R20291 8467525 YP_003217438.1 CDS CDR20291_0939 NC_013316.1 1151390 1152124 D lipoprotein 1151390..1152124 Clostridium difficile R20291 8467526 YP_003217439.1 CDS moeA NC_013316.1 1152335 1153516 D molybdopterin biosynthesis protein 1152335..1153516 Clostridium difficile R20291 8467527 YP_003217440.1 CDS mobB NC_013316.1 1153521 1154072 D molybdopterin-guanine dinucleotide biosynthesis protein B 1153521..1154072 Clostridium difficile R20291 8469979 YP_003217441.1 CDS CDR20291_0942 NC_013316.1 1154191 1154466 D PTS system transporter subunit IIB 1154191..1154466 Clostridium difficile R20291 8469974 YP_003217442.1 CDS CDR20291_0943 NC_013316.1 1154722 1156422 D ABC transporter ATP-binding protein/permease 1154722..1156422 Clostridium difficile R20291 8467528 YP_003217443.1 CDS CDR20291_0944 NC_013316.1 1156785 1157972 D hypothetical protein 1156785..1157972 Clostridium difficile R20291 8467529 YP_003217444.1 CDS CDR20291_0945 NC_013316.1 1158008 1159195 D peptidase 1158008..1159195 Clostridium difficile R20291 8467530 YP_003217445.1 CDS zupT NC_013316.1 1159337 1160149 D zinc transporter ZupT 1159337..1160149 Clostridium difficile R20291 8467531 YP_003217446.1 CDS CDR20291_0947 NC_013316.1 1160245 1160805 D hypothetical protein 1160245..1160805 Clostridium difficile R20291 8470446 YP_003217447.1 CDS CDR20291_0948 NC_013316.1 1161056 1161769 D two-component response regulator 1161056..1161769 Clostridium difficile R20291 8467532 YP_003217448.1 CDS CDR20291_0949 NC_013316.1 1161763 1163142 D two-component sensor histidine kinase; sensor histidine kinase virs 1161763..1163142 Clostridium difficile R20291 8467533 YP_003217449.1 CDS CDR20291_0950 NC_013316.1 1163368 1164072 D lipoprotein 1163368..1164072 Clostridium difficile R20291 8467534 YP_003217450.1 CDS dhaB1 NC_013316.1 1164291 1166663 D glycerol dehydratase 1164291..1166663 Clostridium difficile R20291 8467535 YP_003217451.1 CDS dhaB2 NC_013316.1 1166678 1167580 D glycerol dehydratase activator 1166678..1167580 Clostridium difficile R20291 8469660 YP_003217452.1 CDS CDR20291_0953 NC_013316.1 1167600 1168151 D transcriptional regulator 1167600..1168151 Clostridium difficile R20291 8469661 YP_003217453.1 CDS CDR20291_0954 NC_013316.1 1168315 1169187 D phosphoesterase 1168315..1169187 Clostridium difficile R20291 8467536 YP_003217454.1 CDS CDR20291_0955 NC_013316.1 1169351 1170331 D hypothetical protein 1169351..1170331 Clostridium difficile R20291 8467537 YP_003217455.1 CDS CDR20291_0956 NC_013316.1 1170832 1171053 D hypothetical protein 1170832..1171053 Clostridium difficile R20291 8467538 YP_003217456.1 CDS CDR20291_0957 NC_013316.1 1171559 1172428 D nitroreductase family protein 1171559..1172428 Clostridium difficile R20291 8467539 YP_003217457.1 CDS CDR20291_0958 NC_013316.1 1172654 1173520 D AraC family transcriptional regulator 1172654..1173520 Clostridium difficile R20291 8467540 YP_003217458.1 CDS CDR20291_0959 NC_013316.1 1174593 1175711 D transposase-like protein b 1174593..1175711 Clostridium difficile R20291 8467541 YP_003217459.1 CDS CDR20291_0960 NC_013316.1 1175870 1176313 D hypothetical protein 1175870..1176313 Clostridium difficile R20291 8467542 YP_003217460.1 CDS CDR20291_0961 NC_013316.1 1176763 1177899 R hypothetical protein complement(1176763..1177899) Clostridium difficile R20291 8467543 YP_003217461.1 CDS CDR20291_0962 NC_013316.1 1177947 1179149 R hypothetical protein complement(1177947..1179149) Clostridium difficile R20291 8467544 YP_003217462.1 CDS CDR20291_0963 NC_013316.1 1179165 1180574 R hypothetical protein complement(1179165..1180574) Clostridium difficile R20291 8467545 YP_003217463.1 CDS polA NC_013316.1 1182350 1184998 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1182350..1184998 Clostridium difficile R20291 8467546 YP_003217464.1 CDS coaE NC_013316.1 1185007 1185609 D dephospho-CoA kinase 1185007..1185609 Clostridium difficile R20291 8470092 YP_003217465.1 CDS CDR20291_0966 NC_013316.1 1185602 1186156 D transglycosylase 1185602..1186156 Clostridium difficile R20291 8469602 YP_003217466.1 CDS CDR20291_0967 NC_013316.1 1186156 1187871 D solute-binding lipoprotein 1186156..1187871 Clostridium difficile R20291 8467547 YP_003217467.1 CDS CDR20291_0968 NC_013316.1 1187944 1188156 D heavy-metal binding protein 1187944..1188156 Clostridium difficile R20291 8467548 YP_003217468.1 CDS CDR20291_0969 NC_013316.1 1188357 1188956 D hypothetical protein 1188357..1188956 Clostridium difficile R20291 8467549 YP_003217469.1 CDS gloA NC_013316.1 1189184 1189555 D lactoylglutathione lyase 1189184..1189555 Clostridium difficile R20291 8467550 YP_003217470.1 CDS CDR20291_0971 NC_013316.1 1189678 1190961 D cell wall hydrolase 1189678..1190961 Clostridium difficile R20291 8469815 YP_003217471.1 CDS CDR20291_0972 NC_013316.1 1191072 1192016 D hypothetical protein 1191072..1192016 Clostridium difficile R20291 8467551 YP_003217472.1 CDS rnfC NC_013316.1 1192232 1193569 D electron transport complex protein 1192232..1193569 Clostridium difficile R20291 8467552 YP_003217473.1 CDS rnfD NC_013316.1 1193592 1194569 D electron transport complex protein 1193592..1194569 Clostridium difficile R20291 8470181 YP_003217474.1 CDS rnfG NC_013316.1 1194569 1195138 D electron transport complex protein 1194569..1195138 Clostridium difficile R20291 8470182 YP_003217475.1 CDS rnfE NC_013316.1 1195151 1195744 D electron transport complex protein 1195151..1195744 Clostridium difficile R20291 8470184 YP_003217476.1 CDS rnfA NC_013316.1 1195759 1196334 D electron transport complex protein 1195759..1196334 Clostridium difficile R20291 8470183 YP_003217477.1 CDS rnfB NC_013316.1 1196350 1197321 D electron transport complex protein 1196350..1197321 Clostridium difficile R20291 8470179 YP_003217478.1 CDS CDR20291_0979 NC_013316.1 1197360 1197527 R hypothetical protein complement(1197360..1197527) Clostridium difficile R20291 8470180 YP_003217479.1 CDS maf NC_013316.1 1197541 1198125 D septum formation protein 1197541..1198125 Clostridium difficile R20291 8467553 YP_003217480.1 CDS radC NC_013316.1 1198170 1198829 D DNA repair protein 1198170..1198829 Clostridium difficile R20291 8469948 YP_003217481.1 CDS mreB2 NC_013316.1 1198899 1199960 D rod shape-determining protein MreB 1198899..1199960 Clostridium difficile R20291 8470150 YP_003217482.1 CDS mreC NC_013316.1 1199970 1200863 D rod shape-determining protein 1199970..1200863 Clostridium difficile R20291 8469986 YP_003217483.1 CDS CDR20291_0984 NC_013316.1 1200878 1201366 D hypothetical protein 1200878..1201366 Clostridium difficile R20291 8469987 YP_003217484.1 CDS CDR20291_0985 NC_013316.1 1201378 1204356 D penicillin-binding protein 1201378..1204356 Clostridium difficile R20291 8467554 YP_003217485.1 CDS minC NC_013316.1 1204454 1205137 D septum site-determining protein 1204454..1205137 Clostridium difficile R20291 8467555 YP_003217486.1 CDS divIVB NC_013316.1 1205161 1205958 D septum site-determining protein (cell division inhibitor) 1205161..1205958 Clostridium difficile R20291 8469967 YP_003217487.1 CDS minE NC_013316.1 1205976 1206260 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1205976..1206260 Clostridium difficile R20291 8469665 YP_003217488.1 CDS mrdB NC_013316.1 1206345 1207475 D rod shape-determining protein 1206345..1207475 Clostridium difficile R20291 8469968 YP_003217489.1 CDS mgsA NC_013316.1 1207516 1207929 D methylglyoxal synthase 1207516..1207929 Clostridium difficile R20291 8469984 YP_003217490.1 CDS CDR20291_0991 NC_013316.1 1208414 1208743 D PadR family transcriptional regulator 1208414..1208743 Clostridium difficile R20291 8469965 YP_003217491.1 CDS CDR20291_0992 NC_013316.1 1208747 1209538 D hypothetical protein 1208747..1209538 Clostridium difficile R20291 8467556 YP_003217492.1 CDS CDR20291_0993 NC_013316.1 1210042 1211184 D hypothetical protein 1210042..1211184 Clostridium difficile R20291 8467557 YP_003217493.1 CDS norV NC_013316.1 1211396 1212589 R anaerobic nitric oxide reductase flavorubredoxin complement(1211396..1212589) Clostridium difficile R20291 8467558 YP_003217494.1 CDS CDR20291_0995 NC_013316.1 1212908 1214752 D radical SAM protein 1212908..1214752 Clostridium difficile R20291 8470016 YP_003217495.1 CDS CDR20291_0996 NC_013316.1 1214754 1215455 D hypothetical protein 1214754..1215455 Clostridium difficile R20291 8467559 YP_003217496.1 CDS cafA NC_013316.1 1215473 1216894 D ribonuclease g 1215473..1216894 Clostridium difficile R20291 8467560 YP_003217497.1 CDS rplU NC_013316.1 1216995 1217306 D 50S ribosomal protein L21 1216995..1217306 Clostridium difficile R20291 8469559 YP_003217498.1 CDS CDR20291_0999 NC_013316.1 1217321 1217638 D hypothetical protein 1217321..1217638 Clostridium difficile R20291 8470210 YP_003217499.1 CDS rpmA NC_013316.1 1217652 1217942 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1217652..1217942 Clostridium difficile R20291 8467561 YP_003217500.1 CDS obg NC_013316.1 1218044 1219330 D Spo0B-associated GTP-binding protein 1218044..1219330 Clostridium difficile R20291 8470214 YP_003217501.1 CDS CDR20291_1002 NC_013316.1 1219382 1219750 D hypothetical protein 1219382..1219750 Clostridium difficile R20291 8470035 YP_003217502.1 CDS hom1 NC_013316.1 1220051 1221256 D homoserine dehydrogenase 1220051..1221256 Clostridium difficile R20291 8467562 YP_003217503.1 CDS CDR20291_1004 NC_013316.1 1221457 1222023 R integrase/recombinase complement(1221457..1222023) Clostridium difficile R20291 8469879 YP_003217504.1 CDS CDR20291_1005 NC_013316.1 1222291 1223550 R hypothetical protein complement(1222291..1223550) Clostridium difficile R20291 8467563 YP_003217505.1 CDS CDR20291_1006 NC_013316.1 1223675 1224388 D GntR family transcriptional regulator 1223675..1224388 Clostridium difficile R20291 8467564 YP_003217506.1 CDS CDR20291_1007 NC_013316.1 1224506 1225780 D hypothetical protein 1224506..1225780 Clostridium difficile R20291 8467565 YP_003217507.1 CDS etfB3 NC_013316.1 1225797 1226585 D electron transfer flavoprotein subunit beta 1225797..1226585 Clostridium difficile R20291 8467566 YP_003217508.1 CDS etfA3 NC_013316.1 1226599 1227819 D electron transfer flavoprotein subunit alpha 1226599..1227819 Clostridium difficile R20291 8469698 YP_003217509.1 CDS CDR20291_1010 NC_013316.1 1227830 1229221 D FAD/FMN-containing dehydrogenase 1227830..1229221 Clostridium difficile R20291 8469695 YP_003217510.1 CDS CDR20291_1011 NC_013316.1 1229484 1230764 R hypothetical protein complement(1229484..1230764) Clostridium difficile R20291 8467567 YP_003217511.1 CDS ackA NC_013316.1 1231227 1232423 D acetate kinase 1231227..1232423 Clostridium difficile R20291 8467568 YP_003217512.1 CDS CDR20291_1013 NC_013316.1 1232516 1233040 D hypothetical protein 1232516..1233040 Clostridium difficile R20291 8469463 YP_003217513.1 CDS rpmF NC_013316.1 1233065 1233241 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1233065..1233241 Clostridium difficile R20291 8467569 YP_003217514.1 CDS fapR NC_013316.1 1233448 1234005 D negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 1233448..1234005 Clostridium difficile R20291 8470219 YP_003217515.1 CDS plsX NC_013316.1 1234016 1235038 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1234016..1235038 Clostridium difficile R20291 8469715 YP_003217516.1 CDS fabH NC_013316.1 1235064 1236050 D 3-oxoacyl-ACP synthase III 1235064..1236050 Clostridium difficile R20291 8470090 YP_003217517.1 CDS fabK NC_013316.1 1236159 1237088 D trans-2-enoyl-ACP reductase 1236159..1237088 Clostridium difficile R20291 8469712 YP_003217518.1 CDS fabD NC_013316.1 1237104 1238054 D malonyl coa-acyl carrier protein transacylase 1237104..1238054 Clostridium difficile R20291 8469713 YP_003217519.1 CDS fabG NC_013316.1 1238054 1238803 D 3-oxoacyl-ACP reductase 1238054..1238803 Clostridium difficile R20291 8469709 YP_003217520.1 CDS acpP NC_013316.1 1238857 1239081 D acyl carrier protein 1238857..1239081 Clostridium difficile R20291 8469711 YP_003217521.1 CDS fabF NC_013316.1 1239110 1240348 D 3-oxoacyl-ACP synthase II 1239110..1240348 Clostridium difficile R20291 8469470 YP_003217522.1 CDS CDR20291_1023 NC_013316.1 1240574 1242292 D signaling protein 1240574..1242292 Clostridium difficile R20291 8469710 YP_003217523.1 CDS CDR20291_1024 NC_013316.1 1242323 1244323 D sigma-54 dependent transcriptional regulator 1242323..1244323 Clostridium difficile R20291 8467570 YP_003217524.1 CDS CDR20291_1025 NC_013316.1 1244668 1244916 D hypothetical protein 1244668..1244916 Clostridium difficile R20291 8467571 YP_003217525.1 CDS CDR20291_1026 NC_013316.1 1244951 1245676 D glutamine amidotransferase 1244951..1245676 Clostridium difficile R20291 8467572 YP_003217526.1 CDS CDR20291_1027 NC_013316.1 1245698 1247011 D amino acid permease 1245698..1247011 Clostridium difficile R20291 8467573 YP_003217527.1 CDS CDR20291_1028 NC_013316.1 1247310 1247756 D acetyltransferase 1247310..1247756 Clostridium difficile R20291 8467574 YP_003217528.1 CDS fbp NC_013316.1 1247845 1249830 D fructose-1,6-bisphosphatase 1247845..1249830 Clostridium difficile R20291 8467575 YP_003217529.1 CDS spoIIIAA NC_013316.1 1250054 1251022 D stage III sporulation protein AA 1250054..1251022 Clostridium difficile R20291 8469717 YP_003217530.1 CDS spoIIIAB NC_013316.1 1251012 1251533 D stage III sporulation protein AB 1251012..1251533 Clostridium difficile R20291 8470313 YP_003217531.1 CDS spoIIIAC NC_013316.1 1251535 1251747 D stage III sporulation protein AC 1251535..1251747 Clostridium difficile R20291 8470314 YP_003217532.1 CDS spoIIIAD NC_013316.1 1251763 1252149 D stage III sporulation protein AD 1251763..1252149 Clostridium difficile R20291 8470315 YP_003217533.1 CDS spoIIIAE NC_013316.1 1252234 1253439 D stage III sporulation-related protein 1252234..1253439 Clostridium difficile R20291 8470316 YP_003217534.1 CDS spoiIIIAF NC_013316.1 1253499 1254116 D stage III sporulation protein AF 1253499..1254116 Clostridium difficile R20291 8470317 YP_003217535.1 CDS spoIIIAG NC_013316.1 1254128 1254682 D stage iii sporulation protein ag 1254128..1254682 Clostridium difficile R20291 8470322 YP_003217536.1 CDS spoIIIAH NC_013316.1 1254709 1255398 D stage III sporulation protein AH 1254709..1255398 Clostridium difficile R20291 8470318 YP_003217537.1 CDS CDR20291_1038 NC_013316.1 1255508 1255870 D hypothetical protein 1255508..1255870 Clostridium difficile R20291 8470319 YP_003217538.1 CDS nusB NC_013316.1 1255955 1256461 D N utilization substance protein B 1255955..1256461 Clostridium difficile R20291 8467576 YP_003217539.1 CDS gcp NC_013316.1 1256445 1257515 D O-sialoglycoprotein endopeptidase 1256445..1257515 Clostridium difficile R20291 8470033 YP_003217540.1 CDS xseA NC_013316.1 1257512 1258717 D exodeoxyribonuclease VII large subunit 1257512..1258717 Clostridium difficile R20291 8469801 YP_003217541.1 CDS xseB NC_013316.1 1258719 1258934 D exodeoxyribonuclease VII small subunit 1258719..1258934 Clostridium difficile R20291 8470439 YP_003217542.1 CDS ispA NC_013316.1 1258937 1259824 D geranyltranstransferase 1258937..1259824 Clostridium difficile R20291 8470440 YP_003217543.1 CDS CDR20291_1044 NC_013316.1 1259854 1260291 D hypothetical protein 1259854..1260291 Clostridium difficile R20291 8469910 YP_003217544.1 CDS dxs NC_013316.1 1260325 1262190 D 1-deoxy-D-xylulose-5-phosphate synthase 1260325..1262190 Clostridium difficile R20291 8467577 YP_003217545.1 CDS CDR20291_1046 NC_013316.1 1262323 1263135 D RNA methyltransferase 1262323..1263135 Clostridium difficile R20291 8469687 YP_003217546.1 CDS recN NC_013316.1 1263173 1264834 D DNA repair protein 1263173..1264834 Clostridium difficile R20291 8467578 YP_003217547.1 CDS CDR20291_1048 NC_013316.1 1265049 1265915 D hypothetical protein 1265049..1265915 Clostridium difficile R20291 8470164 YP_003217548.1 CDS CDR20291_1049 NC_013316.1 1266006 1266527 R acetyltransferase complement(1266006..1266527) Clostridium difficile R20291 8467579 YP_003217549.1 CDS bltD NC_013316.1 1266558 1267016 R spermine/spermidine acetyltransferase complement(1266558..1267016) Clostridium difficile R20291 8467580 YP_003217550.1 CDS spoIVB NC_013316.1 1267159 1268217 D stage IV sporulation protein B 1267159..1268217 Clostridium difficile R20291 8469556 YP_003217551.1 CDS spo0A NC_013316.1 1268359 1269183 D stage 0 sporulation protein A 1268359..1269183 Clostridium difficile R20291 8470327 YP_003217552.1 CDS CDR20291_1053 NC_013316.1 1269596 1270717 D pyrophosphokinase 1269596..1270717 Clostridium difficile R20291 8470306 YP_003217553.1 CDS CDR20291_1054 NC_013316.1 1270735 1271610 D hypothetical protein 1270735..1271610 Clostridium difficile R20291 8467581 YP_003217554.1 CDS CDR20291_1055 NC_013316.1 1271634 1272326 D glycosyltransferase 1271634..1272326 Clostridium difficile R20291 8467582 YP_003217555.1 CDS CDR20291_1056 NC_013316.1 1272334 1273158 D glycosyltransferase 1272334..1273158 Clostridium difficile R20291 8467583 YP_003217556.1 CDS CDR20291_1057 NC_013316.1 1273163 1274230 D hypothetical protein 1273163..1274230 Clostridium difficile R20291 8467584 YP_003217557.1 CDS nudF NC_013316.1 1274232 1274768 D ADP-ribose pyrophosphatase 1274232..1274768 Clostridium difficile R20291 8467585 YP_003217558.1 CDS CDR20291_1059 NC_013316.1 1274836 1275441 D hypothetical protein 1274836..1275441 Clostridium difficile R20291 8470031 YP_003217559.1 CDS xerD1 NC_013316.1 1275453 1276367 D tyrosine recombinase 1275453..1276367 Clostridium difficile R20291 8467586 YP_003217560.1 CDS deoB NC_013316.1 1276409 1277581 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1276409..1277581 Clostridium difficile R20291 8470436 YP_003217561.1 CDS deoD NC_013316.1 1277628 1278440 D purine nucleoside phosphorylase 1277628..1278440 Clostridium difficile R20291 8469657 YP_003217562.1 CDS deoA NC_013316.1 1278629 1279969 D pyrimidine-nucleoside phosphorylase 1278629..1279969 Clostridium difficile R20291 8469659 YP_003217563.1 CDS CDR20291_1064 NC_013316.1 1280182 1281261 D exported aminodeoxychorismate lyase 1280182..1281261 Clostridium difficile R20291 8469656 YP_003217564.1 CDS CDR20291_1065 NC_013316.1 1281433 1282107 D O-methyltransferase 1281433..1282107 Clostridium difficile R20291 8467587 YP_003217565.1 CDS CDR20291_1066 NC_013316.1 1282094 1283341 D protease 1282094..1283341 Clostridium difficile R20291 8467588 YP_003217566.1 CDS CDR20291_1067 NC_013316.1 1283413 1285077 D penicillin-binding protein 1283413..1285077 Clostridium difficile R20291 8467589 YP_003217567.1 CDS CDR20291_1068 NC_013316.1 1285481 1286731 R site-specific recombinase complement(1285481..1286731) Clostridium difficile R20291 8467590 YP_003217568.1 CDS CDR20291_1069 NC_013316.1 1287123 1287944 R lipoprotein complement(1287123..1287944) Clostridium difficile R20291 8467591 YP_003217569.1 CDS CDR20291_1070 NC_013316.1 1288135 1289562 D cell surface protein 1288135..1289562 Clostridium difficile R20291 8467592 YP_003217570.1 CDS CDR20291_1071 NC_013316.1 1289872 1290543 D hypothetical protein 1289872..1290543 Clostridium difficile R20291 8467593 YP_003217571.1 CDS CDR20291_1072 NC_013316.1 1290537 1291436 D integrase, catalytic region 1290537..1291436 Clostridium difficile R20291 8467594 YP_003217572.1 CDS CDR20291_1073 NC_013316.1 1294919 1295170 D hypothetical protein 1294919..1295170 Clostridium difficile R20291 8467595 YP_003217573.1 CDS CDR20291_1074 NC_013316.1 1296379 1296762 R hypothetical protein complement(1296379..1296762) Clostridium difficile R20291 8467596 YP_003217574.1 CDS CDR20291_1075 NC_013316.1 1296889 1297233 D hypothetical protein 1296889..1297233 Clostridium difficile R20291 8467597 YP_003217575.1 CDS CDR20291_1077 NC_013316.1 1298617 1298934 R hypothetical protein complement(1298617..1298934) Clostridium difficile R20291 8467599 YP_003217576.1 CDS CDR20291_1078 NC_013316.1 1299226 1299795 R hypothetical protein complement(1299226..1299795) Clostridium difficile R20291 8467600 YP_003217577.1 CDS vanZ NC_013316.1 1300949 1301458 D teicoplanin resistance protein 1300949..1301458 Clostridium difficile R20291 8467601 YP_003217578.1 CDS CDR20291_1080 NC_013316.1 1301560 1301754 R phage-related DNA-directed RNA polymerase 7 kDa polypeptide complement(1301560..1301754) Clostridium difficile R20291 8470427 YP_003217579.1 CDS CDR20291_1081 NC_013316.1 1303217 1303591 D hypothetical protein 1303217..1303591 Clostridium difficile R20291 8467602 YP_003217580.1 CDS CDR20291_1082 NC_013316.1 1303575 1304291 D hypothetical protein 1303575..1304291 Clostridium difficile R20291 8467603 YP_003217581.1 CDS CDR20291_1083 NC_013316.1 1304284 1304730 D hypothetical protein 1304284..1304730 Clostridium difficile R20291 8467604 YP_003217582.1 CDS CDR20291_1084 NC_013316.1 1304720 1305244 D hypothetical protein 1304720..1305244 Clostridium difficile R20291 8467605 YP_003217583.1 CDS efp NC_013316.1 1305541 1306113 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1305541..1306113 Clostridium difficile R20291 8467606 YP_003217584.1 CDS CDR20291_1086 NC_013316.1 1306205 1306660 D hypothetical protein 1306205..1306660 Clostridium difficile R20291 8469688 YP_003217585.1 CDS rnc NC_013316.1 1306823 1307533 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1306823..1307533 Clostridium difficile R20291 8467607 YP_003217586.1 CDS CDR20291_1088 NC_013316.1 1307587 1308657 D radical SAM protein 1307587..1308657 Clostridium difficile R20291 8470178 YP_003217587.1 CDS smc NC_013316.1 1308685 1312239 D chromosome partition protein 1308685..1312239 Clostridium difficile R20291 8467608 YP_003217588.1 CDS ftsY NC_013316.1 1312266 1313546 D signal recognition particle 1312266..1313546 Clostridium difficile R20291 8470288 YP_003217589.1 CDS CDR20291_1091 NC_013316.1 1313649 1314017 D hypothetical protein 1313649..1314017 Clostridium difficile R20291 8469781 YP_003217590.1 CDS ffh NC_013316.1 1314014 1315366 D signal recognition particle protein 1314014..1315366 Clostridium difficile R20291 8467609 YP_003217591.1 CDS rpsP NC_013316.1 1315404 1315676 D 30S ribosomal protein S16 1315404..1315676 Clostridium difficile R20291 8469730 YP_003217592.1 CDS CDR20291_1094 NC_013316.1 1315741 1315968 D hypothetical protein 1315741..1315968 Clostridium difficile R20291 8470243 YP_003217593.1 CDS rimM NC_013316.1 1316076 1316591 D 16S rRNA processing protein 1316076..1316591 Clostridium difficile R20291 8467610 YP_003217594.1 CDS trmD NC_013316.1 1316600 1317295 D tRNA (Guanine-n(1)-)-methyltransferase 1316600..1317295 Clostridium difficile R20291 8470175 YP_003217595.1 CDS rplS NC_013316.1 1317480 1317830 D 50S ribosomal protein L19 1317480..1317830 Clostridium difficile R20291 8470393 YP_003217596.1 CDS CDR20291_1098 NC_013316.1 1318142 1319047 D GTPase 1318142..1319047 Clostridium difficile R20291 8470208 YP_003217597.1 CDS CDR20291_1099 NC_013316.1 1319436 1320728 D branched-chain amino acid transport system carrier protein 1319436..1320728 Clostridium difficile R20291 8467611 YP_003217598.1 CDS CDR20291_1100 NC_013316.1 1321846 1323138 D branched chain amino acid transport system carrier protein 1321846..1323138 Clostridium difficile R20291 8467612 YP_003217599.1 CDS CDR20291_1101 NC_013316.1 1323703 1325892 D ribonucleotide-diphosphate reductase 1323703..1325892 Clostridium difficile R20291 8467613 YP_003217600.1 CDS rnhB NC_013316.1 1325960 1326727 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1325960..1326727 Clostridium difficile R20291 8467614 YP_003217601.1 CDS CDR20291_1103 NC_013316.1 1326785 1327801 D FMN-dependent dehydrogenase 1326785..1327801 Clostridium difficile R20291 8470185 YP_003217602.1 CDS CDR20291_1104 NC_013316.1 1327867 1328115 D hypothetical protein 1327867..1328115 Clostridium difficile R20291 8467615 YP_003217603.1 CDS CDR20291_1105 NC_013316.1 1328292 1328789 R regulatory protein complement(1328292..1328789) Clostridium difficile R20291 8467616 YP_003217604.1 CDS CDR20291_1106 NC_013316.1 1329030 1330094 R ABC transporter permease complement(1329030..1330094) Clostridium difficile R20291 8467617 YP_003217605.1 CDS CDR20291_1107 NC_013316.1 1330097 1331194 R ABC transporter permease complement(1330097..1331194) Clostridium difficile R20291 8467618 YP_003217606.1 CDS CDR20291_1108 NC_013316.1 1331208 1332143 R ABC transporter ATP-binding protein complement(1331208..1332143) Clostridium difficile R20291 8467619 YP_003217607.1 CDS CDR20291_1109 NC_013316.1 1332331 1332984 R two-component response regulator complement(1332331..1332984) Clostridium difficile R20291 8467620 YP_003217608.1 CDS CDR20291_1110 NC_013316.1 1332968 1334176 R two-component sensor histidine kinase complement(1332968..1334176) Clostridium difficile R20291 8467621 YP_003217609.1 CDS CDR20291_1111 NC_013316.1 1334313 1334657 D hypothetical protein 1334313..1334657 Clostridium difficile R20291 8467622 YP_003217610.1 CDS CDR20291_1112 NC_013316.1 1334688 1336289 D competence protein 1334688..1336289 Clostridium difficile R20291 8467623 YP_003217611.1 CDS CDR20291_1113 NC_013316.1 1336308 1337408 D competence protein 1336308..1337408 Clostridium difficile R20291 8467624 YP_003217612.1 CDS topA NC_013316.1 1337441 1339528 D DNA topoisomerase I 1337441..1339528 Clostridium difficile R20291 8467625 YP_003217613.1 CDS codY NC_013316.1 1339693 1340478 D CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1339693..1340478 Clostridium difficile R20291 8470389 YP_003217614.1 CDS CDR20291_1116 NC_013316.1 1340555 1341850 D recombination factor protein RarA 1340555..1341850 Clostridium difficile R20291 8469607 YP_003217615.1 CDS CDR20291_1117 NC_013316.1 1341881 1342651 D acetyltransferase 1341881..1342651 Clostridium difficile R20291 8467626 YP_003217616.1 CDS CDR20291_1118 NC_013316.1 1342760 1343206 D RRF2 family transcriptional regulator 1342760..1343206 Clostridium difficile R20291 8467627 YP_003217617.1 CDS iscS2 NC_013316.1 1343215 1344417 D cysteine desulfurase 1343215..1344417 Clostridium difficile R20291 8467628 YP_003217618.1 CDS CDR20291_1120 NC_013316.1 1344471 1344911 D NifU-like protein 1344471..1344911 Clostridium difficile R20291 8469909 YP_003217619.1 CDS trmU NC_013316.1 1345200 1346279 D tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1345200..1346279 Clostridium difficile R20291 8467629 YP_003217620.1 CDS alaS NC_013316.1 1346728 1349367 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1346728..1349367 Clostridium difficile R20291 8470395 YP_003217621.1 CDS CDR20291_1123 NC_013316.1 1349392 1349649 D hypothetical protein 1349392..1349649 Clostridium difficile R20291 8469487 YP_003217622.1 CDS CDR20291_1124 NC_013316.1 1349659 1351830 D hypothetical protein 1349659..1351830 Clostridium difficile R20291 8467630 YP_003217623.1 CDS CDR20291_1125 NC_013316.1 1352036 1352461 D holliday junction resolvase 1352036..1352461 Clostridium difficile R20291 8467631 YP_003217624.1 CDS CDR20291_1126 NC_013316.1 1352539 1352826 D hypothetical protein 1352539..1352826 Clostridium difficile R20291 8467632 YP_003217625.1 CDS fur NC_013316.1 1353108 1353566 D ferric uptake regulation protein 1353108..1353566 Clostridium difficile R20291 8467633 YP_003217626.1 CDS CDR20291_1128 NC_013316.1 1353683 1354420 R membrane-bound metal-dependent hydrolase complement(1353683..1354420) Clostridium difficile R20291 8469785 YP_003217627.1 CDS CDR20291_1129 NC_013316.1 1354592 1356313 D metallo-beta-lactamase 1354592..1356313 Clostridium difficile R20291 8467634 YP_003217628.1 CDS CDR20291_1130 NC_013316.1 1356519 1356719 D small acid-soluble spore protein 1356519..1356719 Clostridium difficile R20291 8467635 YP_003217629.1 CDS dacF NC_013316.1 1356773 1357936 D D-alanyl-D-alanine carboxypeptidase 1356773..1357936 Clostridium difficile R20291 8467636 YP_003217630.1 CDS CDR20291_1132 NC_013316.1 1358147 1358569 R hypothetical protein complement(1358147..1358569) Clostridium difficile R20291 8469645 YP_003217631.1 CDS CDR20291_1133 NC_013316.1 1358590 1359426 R AraC family transcriptional regulator complement(1358590..1359426) Clostridium difficile R20291 8467637 YP_003217632.1 CDS CDR20291_1134 NC_013316.1 1359724 1360320 D membrane-associated peptidase 1359724..1360320 Clostridium difficile R20291 8467638 YP_003217633.1 CDS scpA NC_013316.1 1360350 1361069 D segregation and condensation protein A 1360350..1361069 Clostridium difficile R20291 8467639 YP_003217634.1 CDS scpB NC_013316.1 1361071 1361610 D segregation and condensation protein B 1361071..1361610 Clostridium difficile R20291 8470262 YP_003217635.1 CDS CDR20291_1137 NC_013316.1 1361772 1362401 D hypothetical protein 1361772..1362401 Clostridium difficile R20291 8470263 YP_003217636.1 CDS CDR20291_1138 NC_013316.1 1362385 1362783 D hypothetical protein 1362385..1362783 Clostridium difficile R20291 8467640 YP_003217637.1 CDS CDR20291_1139 NC_013316.1 1363031 1363471 D MarR family transcriptional regulator 1363031..1363471 Clostridium difficile R20291 8467641 YP_003217638.1 CDS pepA NC_013316.1 1363487 1364938 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1363487..1364938 Clostridium difficile R20291 8467642 YP_003217639.1 CDS CDR20291_1141 NC_013316.1 1365029 1365697 R hypothetical protein complement(1365029..1365697) Clostridium difficile R20291 8470060 YP_003217640.1 CDS CDR20291_1142 NC_013316.1 1365966 1366106 D hypothetical protein 1365966..1366106 Clostridium difficile R20291 8467643 YP_003217641.1 CDS CDR20291_1143 NC_013316.1 1366281 1366601 R pyrophosphohydrolase complement(1366281..1366601) Clostridium difficile R20291 8467644 YP_003217642.1 CDS CDR20291_1144 NC_013316.1 1366721 1367458 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(1366721..1367458) Clostridium difficile R20291 8467645 YP_003217643.1 CDS acd NC_013316.1 1367673 1369496 D mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 1367673..1369496 Clostridium difficile R20291 8467646 YP_003217644.1 CDS dnaF NC_013316.1 1369711 1374009 D DNA polymerase III PolC-type 1369711..1374009 Clostridium difficile R20291 8469461 YP_003217645.1 CDS CDR20291_1147 NC_013316.1 1374213 1374674 D hypothetical protein 1374213..1374674 Clostridium difficile R20291 8469672 YP_003217646.1 CDS nusA NC_013316.1 1374704 1375858 D transcription elongation protein 1374704..1375858 Clostridium difficile R20291 8467647 YP_003217647.1 CDS CDR20291_1149 NC_013316.1 1375865 1376146 D hypothetical protein 1375865..1376146 Clostridium difficile R20291 8470032 YP_003217648.1 CDS CDR20291_1150 NC_013316.1 1376136 1376447 D ribosomal protein 1376136..1376447 Clostridium difficile R20291 8467648 YP_003217649.1 CDS infB NC_013316.1 1376469 1378409 D translation initiation factor IF-2 1376469..1378409 Clostridium difficile R20291 8467649 YP_003217650.1 CDS rbfA NC_013316.1 1378452 1378832 D ribosome-binding factor A 1378452..1378832 Clostridium difficile R20291 8469902 YP_003217651.1 CDS CDR20291_1153 NC_013316.1 1378786 1379796 D RNA-binding protein 1378786..1379796 Clostridium difficile R20291 8470151 YP_003217652.1 CDS truB NC_013316.1 1379809 1380714 D tRNA pseudouridine synthase B 1379809..1380714 Clostridium difficile R20291 8467650 YP_003217653.1 CDS ribC NC_013316.1 1380845 1381774 D riboflavin biosynthesis protein 1380845..1381774 Clostridium difficile R20291 8470400 YP_003217654.1 CDS CDR20291_1156 NC_013316.1 1381774 1381872 D hypothetical protein 1381774..1381872 Clostridium difficile R20291 8470171 YP_003217655.1 CDS rpsO NC_013316.1 1381878 1382135 D 30S ribosomal protein S15 1381878..1382135 Clostridium difficile R20291 8467651 YP_003217656.1 CDS CDR20291_1158 NC_013316.1 1382375 1383220 D hypothetical protein 1382375..1383220 Clostridium difficile R20291 8470242 YP_003217657.1 CDS comR NC_013316.1 1383345 1385456 D polynucleotide phosphorylase/polyadenylase 1383345..1385456 Clostridium difficile R20291 8467652 YP_003217658.1 CDS CDR20291_1160 NC_013316.1 1385722 1386465 D polysaccharide deacetylase 1385722..1386465 Clostridium difficile R20291 8469609 YP_003217659.1 CDS CDR20291_1161 NC_013316.1 1386623 1387870 D peptidase 1386623..1387870 Clostridium difficile R20291 8467653 YP_003217660.1 CDS CDR20291_1162 NC_013316.1 1387905 1388150 D hypothetical protein 1387905..1388150 Clostridium difficile R20291 8467654 YP_003217661.1 CDS dapG NC_013316.1 1388160 1389383 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I 1388160..1389383 Clostridium difficile R20291 8467655 YP_003217662.1 CDS tepA NC_013316.1 1389496 1390230 D translocation-enhancing protein TepA 1389496..1390230 Clostridium difficile R20291 8469652 YP_003217663.1 CDS ftsK NC_013316.1 1390353 1392764 D DNA translocase 1390353..1392764 Clostridium difficile R20291 8470361 YP_003217664.1 CDS CDR20291_1166 NC_013316.1 1392767 1393825 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 1392767..1393825 Clostridium difficile R20291 8469779 YP_003217665.1 CDS CDR20291_1167 NC_013316.1 1393819 1395153 D radical SAM protein 1393819..1395153 Clostridium difficile R20291 8467656 YP_003217666.1 CDS pgsA NC_013316.1 1395131 1395682 D CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1395131..1395682 Clostridium difficile R20291 8467657 YP_003217667.1 CDS recA NC_013316.1 1395970 1397016 D RecA protein (recombinase A) 1395970..1397016 Clostridium difficile R20291 8470074 YP_003217668.1 CDS CDR20291_1170 NC_013316.1 1397192 1398733 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1397192..1398733 Clostridium difficile R20291 8470160 YP_003217669.1 CDS CDR20291_1171 NC_013316.1 1399368 1401149 D hypothetical protein 1399368..1401149 Clostridium difficile R20291 8467658 YP_003217670.1 CDS sip3 NC_013316.1 1401231 1401779 R signal peptidase I complement(1401231..1401779) Clostridium difficile R20291 8467659 YP_003217671.1 CDS bacA1 NC_013316.1 1401801 1402646 R UDP-diphosphatase complement(1401801..1402646) Clostridium difficile R20291 8470284 YP_003217672.1 CDS xerD2 NC_013316.1 1402861 1403790 D tyrosine recombinase 1402861..1403790 Clostridium difficile R20291 8469535 YP_003217673.1 CDS CDR20291_1175 NC_013316.1 1403934 1405379 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1403934..1405379 Clostridium difficile R20291 8470437 YP_003217674.1 CDS CDR20291_1176 NC_013316.1 1405690 1406142 D MarR family transcriptional regulator 1405690..1406142 Clostridium difficile R20291 8467660 YP_003217675.1 CDS malX NC_013316.1 1406555 1408132 D PTS system maltose and glucose-specific transporter subunit IIBC 1406555..1408132 Clostridium difficile R20291 8467661 YP_003217676.1 CDS CDR20291_1178 NC_013316.1 1408291 1409043 D RpiR family transcriptional regulator 1408291..1409043 Clostridium difficile R20291 8469950 YP_003217677.1 CDS glvG NC_013316.1 1409176 1410522 D maltose-6'-phosphate glucosidase 1409176..1410522 Clostridium difficile R20291 8467662 YP_003217678.1 CDS CDR20291_1180 NC_013316.1 1410634 1411830 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1410634..1411830) Clostridium difficile R20291 8469825 YP_003217679.1 CDS CDR20291_1181 NC_013316.1 1412215 1413165 D galactose-1-phosphate uridylyltransferase 1412215..1413165 Clostridium difficile R20291 8467663 YP_003217680.1 CDS exoA NC_013316.1 1413311 1414078 D exodeoxyribonuclease 1413311..1414078 Clostridium difficile R20291 8467664 YP_003217681.1 CDS CDR20291_1183 NC_013316.1 1414170 1414745 R exonuclease complement(1414170..1414745) Clostridium difficile R20291 8469708 YP_003217682.1 CDS CDR20291_1184 NC_013316.1 1414761 1415132 D hypothetical protein 1414761..1415132 Clostridium difficile R20291 8467665 YP_003217683.1 CDS glnA NC_013316.1 1415261 1417159 D glutamine synthetase 1415261..1417159 Clostridium difficile R20291 8467666 YP_003217684.1 CDS CDR20291_1186 NC_013316.1 1417287 1418408 R cell wall biosynthesis protein complement(1417287..1418408) Clostridium difficile R20291 8469812 YP_003217685.1 CDS CDR20291_1187 NC_013316.1 1418607 1418939 D padr family transcriptional regulator 1418607..1418939 Clostridium difficile R20291 8467667 YP_003217686.1 CDS CDR20291_1188 NC_013316.1 1418926 1419984 D hypothetical protein 1418926..1419984 Clostridium difficile R20291 8467668 YP_003217687.1 CDS CDR20291_1189 NC_013316.1 1419977 1421047 D hypothetical protein 1419977..1421047 Clostridium difficile R20291 8467669 YP_003217688.1 CDS CDR20291_1190 NC_013316.1 1421149 1421685 D lipoprotein 1421149..1421685 Clostridium difficile R20291 8467670 YP_003217689.1 CDS CDR20291_1191 NC_013316.1 1421793 1422509 D lantibiotic ABC transporter ATP-binding protein 1421793..1422509 Clostridium difficile R20291 8467671 YP_003217690.1 CDS CDR20291_1192 NC_013316.1 1422511 1423227 D lantibiotic ABC transporter permease 1422511..1423227 Clostridium difficile R20291 8467672 YP_003217691.1 CDS CDR20291_1193 NC_013316.1 1423229 1423987 D lantibiotic ABC transporter permease 1423229..1423987 Clostridium difficile R20291 8467673 YP_003217692.1 CDS CDR20291_1194 NC_013316.1 1424122 1425519 D lantibiotic two-component sensor histidine kinase 1424122..1425519 Clostridium difficile R20291 8467674 YP_003217693.1 CDS CDR20291_1195 NC_013316.1 1425595 1426416 R pyridoxine kinase complement(1425595..1426416) Clostridium difficile R20291 8467675 YP_003217694.1 CDS CDR20291_1196 NC_013316.1 1426643 1427821 D hypothetical protein 1426643..1427821 Clostridium difficile R20291 8467676 YP_003217695.1 CDS cspB NC_013316.1 1428004 1428204 D cold shock protein 1428004..1428204 Clostridium difficile R20291 8467677 YP_003217696.1 CDS CDR20291_1198 NC_013316.1 1428625 1429053 D regulatory protein 1428625..1429053 Clostridium difficile R20291 8469622 YP_003217697.1 CDS CDR20291_1199 NC_013316.1 1429196 1429981 R peptidyl-prolyl isomerase complement(1429196..1429981) Clostridium difficile R20291 8467678 YP_003217698.1 CDS CDR20291_1200 NC_013316.1 1430072 1430488 R hypothetical protein complement(1430072..1430488) Clostridium difficile R20291 8467679 YP_003217699.1 CDS CDR20291_1201 NC_013316.1 1430652 1431158 R hypothetical protein complement(1430652..1431158) Clostridium difficile R20291 8467680 YP_003217700.1 CDS CDR20291_1202 NC_013316.1 1431240 1431560 R phage repressor complement(1431240..1431560) Clostridium difficile R20291 8467681 YP_003217701.1 CDS CDR20291_1203 NC_013316.1 1431729 1431926 D phage regulatory protein 1431729..1431926 Clostridium difficile R20291 8467682 YP_003217702.1 CDS CDR20291_1204 NC_013316.1 1432031 1432471 D hypothetical protein 1432031..1432471 Clostridium difficile R20291 8467683 YP_003217703.1 CDS CDR20291_1205 NC_013316.1 1432720 1433163 D hypothetical protein 1432720..1433163 Clostridium difficile R20291 8467684 YP_003217704.1 CDS CDR20291_1206 NC_013316.1 1433168 1434232 D hypothetical protein 1433168..1434232 Clostridium difficile R20291 8467685 YP_003217705.1 CDS CDR20291_1207 NC_013316.1 1434246 1434674 D hypothetical protein 1434246..1434674 Clostridium difficile R20291 8467686 YP_003217706.1 CDS CDR20291_1208 NC_013316.1 1434788 1435234 D hypothetical protein 1434788..1435234 Clostridium difficile R20291 8467687 YP_003217707.1 CDS CDR20291_1209 NC_013316.1 1435261 1435428 D hypothetical protein 1435261..1435428 Clostridium difficile R20291 8467688 YP_003217708.1 CDS CDR20291_1210 NC_013316.1 1435401 1437881 D hypothetical protein 1435401..1437881 Clostridium difficile R20291 8467689 YP_003217709.1 CDS CDR20291_1211 NC_013316.1 1437881 1438303 D hypothetical protein 1437881..1438303 Clostridium difficile R20291 8467690 YP_003217710.1 CDS CDR20291_1212 NC_013316.1 1438585 1440114 D phage cell wall hydrolase 1438585..1440114 Clostridium difficile R20291 8467691 YP_003217711.1 CDS CDR20291_1213 NC_013316.1 1440130 1440456 D hypothetical protein 1440130..1440456 Clostridium difficile R20291 8467692 YP_003217712.1 CDS CDR20291_1214 NC_013316.1 1440456 1440884 D phage protein 1440456..1440884 Clostridium difficile R20291 8467693 YP_003217713.1 CDS CDR20291_1215 NC_013316.1 1440877 1441929 D phage protein 1440877..1441929 Clostridium difficile R20291 8467694 YP_003217714.1 CDS CDR20291_1216 NC_013316.1 1441926 1442624 D phage protein 1441926..1442624 Clostridium difficile R20291 8467695 YP_003217715.1 CDS CDR20291_1217 NC_013316.1 1442625 1443611 D phage tail fiber protein 1442625..1443611 Clostridium difficile R20291 8467696 YP_003217716.1 CDS CDR20291_1218 NC_013316.1 1443633 1448810 D hypothetical protein 1443633..1448810 Clostridium difficile R20291 8467697 YP_003217717.1 CDS CDR20291_1219 NC_013316.1 1449061 1449180 D hypothetical protein 1449061..1449180 Clostridium difficile R20291 8467698 YP_003217718.1 CDS CDR20291_1220 NC_013316.1 1449443 1449703 D hypothetical protein 1449443..1449703 Clostridium difficile R20291 8467699 YP_003217719.1 CDS CDR20291_1221 NC_013316.1 1449928 1450383 R hypothetical protein complement(1449928..1450383) Clostridium difficile R20291 8467700 YP_003217720.1 CDS CDR20291_1222 NC_013316.1 1450611 1451030 R phage regulatory protein complement(1450611..1451030) Clostridium difficile R20291 8467701 YP_003217721.1 CDS CDR20291_1223 NC_013316.1 1451329 1451538 D phage regulatory protein 1451329..1451538 Clostridium difficile R20291 8467702 YP_003217722.1 CDS CDR20291_1224 NC_013316.1 1451558 1451779 D hypothetical protein 1451558..1451779 Clostridium difficile R20291 8467703 YP_003217723.1 CDS CDR20291_1225 NC_013316.1 1451996 1452403 R phage regulatory protein complement(1451996..1452403) Clostridium difficile R20291 8467704 YP_003217724.1 CDS CDR20291_1226 NC_013316.1 1452815 1455319 R transporter complement(1452815..1455319) Clostridium difficile R20291 8467705 YP_003217725.1 CDS CDR20291_1227 NC_013316.1 1455321 1455863 R TetR family transcriptional regulator complement(1455321..1455863) Clostridium difficile R20291 8467706 YP_003217726.1 CDS glpK2 NC_013316.1 1456100 1457620 D glycerol kinase 1456100..1457620 Clostridium difficile R20291 8467707 YP_003217727.1 CDS CDR20291_1229 NC_013316.1 1457734 1458363 R GntR family transcriptional regulator complement(1457734..1458363) Clostridium difficile R20291 8469817 YP_003217728.1 CDS CDR20291_1230 NC_013316.1 1458952 1459743 D LamB/YcsF family protein 1458952..1459743 Clostridium difficile R20291 8467708 YP_003217729.1 CDS CDR20291_1231 NC_013316.1 1459772 1460992 D transporter 1459772..1460992 Clostridium difficile R20291 8467709 YP_003217730.1 CDS CDR20291_1232 NC_013316.1 1460976 1461707 D allophanate hydrolase subunit 1 1460976..1461707 Clostridium difficile R20291 8467710 YP_003217731.1 CDS CDR20291_1233 NC_013316.1 1461737 1462723 D allophanate hydrolase subunit 2 1461737..1462723 Clostridium difficile R20291 8467711 YP_003217732.1 CDS CDR20291_1234 NC_013316.1 1462942 1463508 R hypothetical protein complement(1462942..1463508) Clostridium difficile R20291 8467712 YP_003217733.1 CDS CDR20291_1235 NC_013316.1 1463860 1464927 D chloromuconate cycloisomerase 1463860..1464927 Clostridium difficile R20291 8467713 YP_003217734.1 CDS CDR20291_1236 NC_013316.1 1464946 1466106 D hypothetical protein 1464946..1466106 Clostridium difficile R20291 8467714 YP_003217735.1 CDS CDR20291_1237 NC_013316.1 1466119 1468215 D esterase 1466119..1468215 Clostridium difficile R20291 8467715 YP_003217736.1 CDS CDR20291_1238 NC_013316.1 1468374 1468718 R endoribonuclease complement(1468374..1468718) Clostridium difficile R20291 8467716 YP_003217737.1 CDS CDR20291_1239 NC_013316.1 1469010 1469900 D hypothetical protein 1469010..1469900 Clostridium difficile R20291 8467717 YP_003217738.1 CDS CDR20291_1240 NC_013316.1 1470118 1471404 D oxidoreductase 1470118..1471404 Clostridium difficile R20291 8467718 YP_003217739.1 CDS CDR20291_1241 NC_013316.1 1471493 1471936 R hypothetical protein complement(1471493..1471936) Clostridium difficile R20291 8467719 YP_003217740.1 CDS CDR20291_1242 NC_013316.1 1471960 1472811 R amino acid amidase complement(1471960..1472811) Clostridium difficile R20291 8467720 YP_003217741.1 CDS CDR20291_1243 NC_013316.1 1473320 1473796 R hypothetical protein complement(1473320..1473796) Clostridium difficile R20291 8467721 YP_003217742.1 CDS CDR20291_1244 NC_013316.1 1473897 1475075 R peptidase complement(1473897..1475075) Clostridium difficile R20291 8467722 YP_003217743.1 CDS CDR20291_1245 NC_013316.1 1475229 1476092 D muramoyltetrapeptide carboxypeptidase 1475229..1476092 Clostridium difficile R20291 8467723 YP_003217744.1 CDS CDR20291_1246 NC_013316.1 1476163 1476756 D hypothetical protein 1476163..1476756 Clostridium difficile R20291 8467724 YP_003217745.1 CDS CDR20291_1247 NC_013316.1 1477007 1477642 R hypothetical protein complement(1477007..1477642) Clostridium difficile R20291 8467725 YP_003217746.1 CDS glpQ NC_013316.1 1477722 1478453 R glycerophosphoryl diester phosphodiesterase complement(1477722..1478453) Clostridium difficile R20291 8467726 YP_003217747.1 CDS CDR20291_1249 NC_013316.1 1478784 1480973 D nonribosomal peptide synthetase 1478784..1480973 Clostridium difficile R20291 8469818 YP_003217748.1 CDS CDR20291_1250 NC_013316.1 1481336 1483312 D oligopeptide transporter 1481336..1483312 Clostridium difficile R20291 8467727 YP_003217749.1 CDS CDR20291_1251 NC_013316.1 1483299 1483646 D hypothetical protein 1483299..1483646 Clostridium difficile R20291 8467728 YP_003217750.1 CDS CDR20291_1252 NC_013316.1 1483888 1485807 R ABC transporter ATP-binding protein complement(1483888..1485807) Clostridium difficile R20291 8467729 YP_003217751.1 CDS CDR20291_1253 NC_013316.1 1485833 1486639 R hypothetical protein complement(1485833..1486639) Clostridium difficile R20291 8467730 YP_003217752.1 CDS CDR20291_1254 NC_013316.1 1486698 1488146 R GntR family transcriptional regulator complement(1486698..1488146) Clostridium difficile R20291 8467731 YP_003217753.1 CDS ddl NC_013316.1 1488170 1489069 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(1488170..1489069) Clostridium difficile R20291 8467732 YP_003217754.1 CDS CDR20291_1256 NC_013316.1 1489327 1490583 D competence damage-inducible protein A 1489327..1490583 Clostridium difficile R20291 8469653 YP_003217755.1 CDS CDR20291_1257 NC_013316.1 1490653 1491432 D hydrolase 1490653..1491432 Clostridium difficile R20291 8467733 YP_003217756.1 CDS CDR20291_1258 NC_013316.1 1491536 1492120 R hypothetical protein complement(1491536..1492120) Clostridium difficile R20291 8467734 YP_003217757.1 CDS CDR20291_1259 NC_013316.1 1492320 1493750 R sigma-54 dependent regulatory protein complement(1492320..1493750) Clostridium difficile R20291 8467735 YP_003217758.1 CDS CDR20291_1260 NC_013316.1 1494066 1495010 D hypothetical protein 1494066..1495010 Clostridium difficile R20291 8467736 YP_003217759.1 CDS CDR20291_1261 NC_013316.1 1495281 1496225 R radical SAM protein complement(1495281..1496225) Clostridium difficile R20291 8467737 YP_003217760.1 CDS CDR20291_1262 NC_013316.1 1496336 1496929 R hypothetical protein complement(1496336..1496929) Clostridium difficile R20291 8467738 YP_003217761.1 CDS CDR20291_1263 NC_013316.1 1497036 1497464 D hypothetical protein 1497036..1497464 Clostridium difficile R20291 8467739 YP_003217762.1 CDS CDR20291_1264 NC_013316.1 1497531 1498199 D ATP-binding protein 1497531..1498199 Clostridium difficile R20291 8467740 YP_003217763.1 CDS CDR20291_1265 NC_013316.1 1498317 1499672 R drug/sodium antiporter complement(1498317..1499672) Clostridium difficile R20291 8467741 YP_003217764.1 CDS CDR20291_1266 NC_013316.1 1502768 1504501 R signaling protein complement(1502768..1504501) Clostridium difficile R20291 8467742 YP_003217765.1 CDS CDR20291_1267 NC_013316.1 1504741 1505586 R signaling protein complement(1504741..1505586) Clostridium difficile R20291 8467743 YP_003217766.1 CDS CDR20291_1268 NC_013316.1 1505617 1507851 R signaling protein complement(1505617..1507851) Clostridium difficile R20291 8467744 YP_003217767.1 CDS CDR20291_1269 NC_013316.1 1508621 1509430 D MerR family transcriptional regulator 1508621..1509430 Clostridium difficile R20291 8467745 YP_003217768.1 CDS CDR20291_1270 NC_013316.1 1509575 1509814 D hypothetical protein 1509575..1509814 Clostridium difficile R20291 8467746 YP_003217769.1 CDS CDR20291_1271 NC_013316.1 1510002 1510178 R hypothetical protein complement(1510002..1510178) Clostridium difficile R20291 8467747 YP_003217770.1 CDS CDR20291_1272 NC_013316.1 1510683 1511357 R hypothetical protein complement(1510683..1511357) Clostridium difficile R20291 8467748 YP_003217771.1 CDS CDR20291_1273 NC_013316.1 1511577 1512131 R hypothetical protein complement(1511577..1512131) Clostridium difficile R20291 8467749 YP_003217772.1 CDS CDR20291_1274 NC_013316.1 1512209 1512574 R transcriptional regulator complement(1512209..1512574) Clostridium difficile R20291 8467750 YP_003217773.1 CDS CDR20291_1275 NC_013316.1 1512805 1512939 D hypothetical protein 1512805..1512939 Clostridium difficile R20291 8467751 YP_003217774.1 CDS CDR20291_1276 NC_013316.1 1513039 1513824 D hypothetical protein 1513039..1513824 Clostridium difficile R20291 8467752 YP_003217775.1 CDS CDR20291_1277 NC_013316.1 1514195 1515433 R hypothetical protein complement(1514195..1515433) Clostridium difficile R20291 8467753 YP_003217776.1 CDS CDR20291_1278 NC_013316.1 1515476 1516261 R transcriptional regulator complement(1515476..1516261) Clostridium difficile R20291 8467754 YP_003217777.1 CDS CDR20291_1279 NC_013316.1 1516429 1517253 R exported polysaccharide deacetylase complement(1516429..1517253) Clostridium difficile R20291 8467755 YP_003217778.1 CDS CDR20291_1280 NC_013316.1 1517474 1520593 D exonuclease 1517474..1520593 Clostridium difficile R20291 8467756 YP_003217779.1 CDS CDR20291_1281 NC_013316.1 1520596 1521210 D ribonuclease 1520596..1521210 Clostridium difficile R20291 8467757 YP_003217780.1 CDS CDR20291_1282 NC_013316.1 1521467 1523596 R bifunctional protein peroxiredoxin/chitinase complement(1521467..1523596) Clostridium difficile R20291 8467758 YP_003217781.1 CDS CDR20291_1283 NC_013316.1 1523820 1524110 D hypothetical protein 1523820..1524110 Clostridium difficile R20291 8467759 YP_003217782.1 CDS CDR20291_1284 NC_013316.1 1524276 1525667 D hypothetical protein 1524276..1525667 Clostridium difficile R20291 8467760 YP_003217783.1 CDS CDR20291_1285 NC_013316.1 1525782 1527251 D hypothetical protein 1525782..1527251 Clostridium difficile R20291 8467761 YP_003217784.1 CDS CDR20291_1286 NC_013316.1 1527316 1527909 D sigma-54-dependent transcriptional regulator 1527316..1527909 Clostridium difficile R20291 8467762 YP_003217785.1 CDS CDR20291_1287 NC_013316.1 1528040 1529437 D multiprotein complex assembly protein 1528040..1529437 Clostridium difficile R20291 8467763 YP_003217786.1 CDS CDR20291_1288 NC_013316.1 1529619 1529990 D hypothetical protein 1529619..1529990 Clostridium difficile R20291 8467764 YP_003217787.1 CDS CDR20291_1289 NC_013316.1 1529983 1530672 D hypothetical protein 1529983..1530672 Clostridium difficile R20291 8467765 YP_003217788.1 CDS CDR20291_1290 NC_013316.1 1531192 1532058 D hypothetical protein 1531192..1532058 Clostridium difficile R20291 8467766 YP_003217789.1 CDS CDR20291_1291 NC_013316.1 1532300 1533109 D hypothetical protein 1532300..1533109 Clostridium difficile R20291 8467767 YP_003217790.1 CDS CDR20291_1292 NC_013316.1 1533228 1534316 D hypothetical protein 1533228..1534316 Clostridium difficile R20291 8467768 YP_003217791.1 CDS CDR20291_1293 NC_013316.1 1534344 1535063 D exported polysaccharide deacetylase 1534344..1535063 Clostridium difficile R20291 8467769 YP_003217792.1 CDS pabA NC_013316.1 1535087 1535671 D para-aminobenzoate synthase glutamine amidotransferase component II 1535087..1535671 Clostridium difficile R20291 8467770 YP_003217793.1 CDS pabB NC_013316.1 1535673 1537022 D para-aminobenzoate synthase component I 1535673..1537022 Clostridium difficile R20291 8470048 YP_003217794.1 CDS pabC NC_013316.1 1537012 1537755 D aminodeoxychorismate lyase 1537012..1537755 Clostridium difficile R20291 8470049 YP_003217795.1 CDS CDR20291_1297 NC_013316.1 1537789 1538490 D hypothetical protein 1537789..1538490 Clostridium difficile R20291 8470050 YP_003217796.1 CDS folE NC_013316.1 1538516 1539088 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1538516..1539088 Clostridium difficile R20291 8467771 YP_003217797.1 CDS folP NC_013316.1 1539142 1539945 D dihydropteroate synthase 1539142..1539945 Clostridium difficile R20291 8469772 YP_003217798.1 CDS folB NC_013316.1 1539956 1540321 D dihydroneopterin aldolase 1539956..1540321 Clostridium difficile R20291 8469774 YP_003217799.1 CDS folK NC_013316.1 1540314 1540820 D 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1540314..1540820 Clostridium difficile R20291 8469769 YP_003217800.1 CDS CDR20291_1302 NC_013316.1 1540801 1541586 D phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase 1540801..1541586 Clostridium difficile R20291 8469773 YP_003217801.1 CDS dnaG NC_013316.1 1541805 1543631 D synthesizes RNA primers at the replication forks; DNA primase 1541805..1543631 Clostridium difficile R20291 8467772 YP_003217802.1 CDS rpoD1 NC_013316.1 1543649 1544815 D RNA polymerase sigma factor (sigma-43) 1543649..1544815 Clostridium difficile R20291 8469673 YP_003217803.1 CDS CDR20291_1305 NC_013316.1 1544962 1545669 D hypothetical protein 1544962..1545669 Clostridium difficile R20291 8470226 YP_003217804.1 CDS CDR20291_1306 NC_013316.1 1545683 1546780 D hypothetical protein 1545683..1546780 Clostridium difficile R20291 8467773 YP_003217805.1 CDS wrbA NC_013316.1 1546839 1547414 D flavoprotein 1546839..1547414 Clostridium difficile R20291 8467774 YP_003217806.1 CDS CDR20291_1308 NC_013316.1 1547474 1547941 R 5-nitroimidazole reductase complement(1547474..1547941) Clostridium difficile R20291 8470431 YP_003217807.1 CDS CDR20291_1309 NC_013316.1 1548327 1548818 R phosphohydrolase complement(1548327..1548818) Clostridium difficile R20291 8467775 YP_003217808.1 CDS CDR20291_1310 NC_013316.1 1548923 1550014 R hypothetical protein complement(1548923..1550014) Clostridium difficile R20291 8467776 YP_003217809.1 CDS CDR20291_1311 NC_013316.1 1550007 1550396 R GntR family transcriptional regulator complement(1550007..1550396) Clostridium difficile R20291 8467777 YP_003217810.1 CDS CDR20291_1312 NC_013316.1 1550588 1551034 D hypothetical protein 1550588..1551034 Clostridium difficile R20291 8467778 YP_003217811.1 CDS CDR20291_1313 NC_013316.1 1551298 1552023 D two-component response regulator 1551298..1552023 Clostridium difficile R20291 8467779 YP_003217812.1 CDS CDR20291_1314 NC_013316.1 1552001 1553254 D two-component sensor kinase 1552001..1553254 Clostridium difficile R20291 8467780 YP_003217813.1 CDS CDR20291_1315 NC_013316.1 1553334 1554011 D ABC transporter ATP-binding protein 1553334..1554011 Clostridium difficile R20291 8467781 YP_003217814.1 CDS CDR20291_1316 NC_013316.1 1554012 1556573 D ABC transporter permease 1554012..1556573 Clostridium difficile R20291 8467782 YP_003217815.1 CDS CDR20291_1317 NC_013316.1 1556794 1558068 D iron-sulfur protein 1556794..1558068 Clostridium difficile R20291 8467783 YP_003217816.1 CDS CDR20291_1318 NC_013316.1 1558229 1561270 R penicillin-binding protein complement(1558229..1561270) Clostridium difficile R20291 8467784 YP_003217817.1 CDS CDR20291_1319 NC_013316.1 1561477 1561776 D phage shock protein 1561477..1561776 Clostridium difficile R20291 8467785 YP_003217818.1 CDS CDR20291_1320 NC_013316.1 1562014 1564242 R membrane protein ( phage infection protein) complement(1562014..1564242) Clostridium difficile R20291 8467786 YP_003217819.1 CDS CDR20291_1321 NC_013316.1 1564536 1566311 D ABC transporter ATP-binding protein/permease 1564536..1566311 Clostridium difficile R20291 8467787 YP_003217820.1 CDS CDR20291_1322 NC_013316.1 1566324 1568147 D ABC transporter ATP-binding protein/permease 1566324..1568147 Clostridium difficile R20291 8467788 YP_003217821.1 CDS CDR20291_1323 NC_013316.1 1568265 1568810 D ruberythrin 1568265..1568810 Clostridium difficile R20291 8467789 YP_003217822.1 CDS CDR20291_1324 NC_013316.1 1569363 1569791 D hypothetical protein 1569363..1569791 Clostridium difficile R20291 8467790 YP_003217823.1 CDS CDR20291_1325 NC_013316.1 1569911 1570519 D hydrolase 1569911..1570519 Clostridium difficile R20291 8467791 YP_003217824.1 CDS CDR20291_1326 NC_013316.1 1571043 1571255 D ferrous iron transport protein 1571043..1571255 Clostridium difficile R20291 8467792 YP_003217825.1 CDS feoA1 NC_013316.1 1571268 1571489 D ferrous iron transport protein A 1571268..1571489 Clostridium difficile R20291 8467793 YP_003217826.1 CDS feoB1 NC_013316.1 1571574 1573745 D ferrous iron transport protein B 1571574..1573745 Clostridium difficile R20291 8469724 YP_003217827.1 CDS CDR20291_1329 NC_013316.1 1573765 1573923 D hypothetical protein 1573765..1573923 Clostridium difficile R20291 8469727 YP_003217828.1 CDS CDR20291_1330 NC_013316.1 1574103 1574813 D hypothetical protein 1574103..1574813 Clostridium difficile R20291 8467794 YP_003217829.1 CDS ssuC NC_013316.1 1574898 1575668 D aliphatic sulfonate ABC transporter permease 1574898..1575668 Clostridium difficile R20291 8467795 YP_003217830.1 CDS ssuB NC_013316.1 1575661 1576392 D aliphatic sulfonates ABC transporter ATP-binding protein 1575661..1576392 Clostridium difficile R20291 8470347 YP_003217831.1 CDS ssuA NC_013316.1 1576426 1577385 D aliphatic sulfonate ABC transporter substrate-binding protein 1576426..1577385 Clostridium difficile R20291 8470346 YP_003217832.1 CDS CDR20291_1334 NC_013316.1 1577483 1578079 R hypothetical protein complement(1577483..1578079) Clostridium difficile R20291 8470345 YP_003217833.1 CDS CDR20291_1335 NC_013316.1 1578325 1578924 D lipoprotein 1578325..1578924 Clostridium difficile R20291 8467796 YP_003217834.1 CDS CDR20291_1336 NC_013316.1 1579092 1579559 R hypothetical protein complement(1579092..1579559) Clostridium difficile R20291 8467797 YP_003217835.1 CDS CDR20291_1337 NC_013316.1 1579664 1580581 D transcriptional regulator 1579664..1580581 Clostridium difficile R20291 8467798 YP_003217836.1 CDS metN NC_013316.1 1582985 1583965 D D-methionine ABC transporter ATP-binding protein 1582985..1583965 Clostridium difficile R20291 8467800 YP_003217837.1 CDS metI NC_013316.1 1583958 1584614 D D-methionine ABC transporter permease 1583958..1584614 Clostridium difficile R20291 8469962 YP_003217838.1 CDS metQ NC_013316.1 1584650 1585441 D D-methionine ABC transporter substrate-binding protein 1584650..1585441 Clostridium difficile R20291 8469961 YP_003217839.1 CDS CDR20291_1342 NC_013316.1 1585589 1588327 D two-component sensor histidine kinase 1585589..1588327 Clostridium difficile R20291 8469963 YP_003217840.1 CDS CDR20291_1343 NC_013316.1 1588436 1589044 D 3-methyladenine DNA glycosylase 1588436..1589044 Clostridium difficile R20291 8467801 YP_003217841.1 CDS CDR20291_1344 NC_013316.1 1589924 1590514 D transcriptional regulator 1589924..1590514 Clostridium difficile R20291 8467802 YP_003217842.1 CDS proC1 NC_013316.1 1590554 1591357 D pyrroline-5-carboxylate reductase 1590554..1591357 Clostridium difficile R20291 8467803 YP_003217843.1 CDS CDR20291_1346 NC_013316.1 1591438 1592640 R hypothetical protein complement(1591438..1592640) Clostridium difficile R20291 8470110 YP_003217844.1 CDS CDR20291_1347 NC_013316.1 1592880 1593356 D hypothetical protein 1592880..1593356 Clostridium difficile R20291 8467804 YP_003217845.1 CDS rpoD2 NC_013316.1 1593626 1594531 D RNA polymerase sigma factor rpoD 1593626..1594531 Clostridium difficile R20291 8467805 YP_003217846.1 CDS CDR20291_1349 NC_013316.1 1595005 1596549 D virulence factor MviN 1595005..1596549 Clostridium difficile R20291 8470227 YP_003217847.1 CDS deoC NC_013316.1 1596585 1597244 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1596585..1597244 Clostridium difficile R20291 8467806 YP_003217848.1 CDS CDR20291_1351 NC_013316.1 1597427 1597795 D transcriptional regulator 1597427..1597795 Clostridium difficile R20291 8469658 YP_003217849.1 CDS CDR20291_1352 NC_013316.1 1597799 1598674 D ABC transporter ATP-binding protein 1597799..1598674 Clostridium difficile R20291 8467807 YP_003217850.1 CDS CDR20291_1353 NC_013316.1 1598675 1599469 D ABC transporter permease 1598675..1599469 Clostridium difficile R20291 8467808 YP_003217851.1 CDS CDR20291_1354 NC_013316.1 1599564 1600889 R drug/sodium antiporter complement(1599564..1600889) Clostridium difficile R20291 8467809 YP_003217852.1 CDS CDR20291_1355 NC_013316.1 1601310 1601894 D thioredoxin 1601310..1601894 Clostridium difficile R20291 8467810 YP_003217853.1 CDS CDR20291_1356 NC_013316.1 1601887 1602036 D hypothetical protein 1601887..1602036 Clostridium difficile R20291 8467811 YP_003217854.1 CDS CDR20291_1357 NC_013316.1 1602047 1602946 D iron-sulfur cluster-binding protein 1602047..1602946 Clostridium difficile R20291 8467812 YP_003217855.1 CDS CDR20291_1358 NC_013316.1 1602951 1603520 D lipoprotein 1602951..1603520 Clostridium difficile R20291 8467813 YP_003217856.1 CDS CDR20291_1359 NC_013316.1 1603687 1604334 R hypothetical protein complement(1603687..1604334) Clostridium difficile R20291 8467814 YP_003217857.1 CDS CDR20291_1360 NC_013316.1 1604724 1605638 R hypothetical protein complement(1604724..1605638) Clostridium difficile R20291 8467815 YP_003217858.1 CDS panC NC_013316.1 1607063 1607911 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(1607063..1607911) Clostridium difficile R20291 8467816 YP_003217859.1 CDS panB NC_013316.1 1607930 1608757 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(1607930..1608757) Clostridium difficile R20291 8470052 YP_003217860.1 CDS CDR20291_1363 NC_013316.1 1608732 1609628 R hypothetical protein complement(1608732..1609628) Clostridium difficile R20291 8470051 YP_003217861.1 CDS CDR20291_1364 NC_013316.1 1610308 1612401 D signaling protein 1610308..1612401 Clostridium difficile R20291 8467817 YP_003217862.1 CDS CDR20291_1365 NC_013316.1 1614014 1614832 D MerR family transcriptional regulator 1614014..1614832 Clostridium difficile R20291 8467818 YP_003217863.1 CDS feoB2 NC_013316.1 1614965 1617085 R ferrous ion transport protein complement(1614965..1617085) Clostridium difficile R20291 8467819 YP_003217864.1 CDS feoA2 NC_013316.1 1617111 1617338 R ferrous ion transport protein complement(1617111..1617338) Clostridium difficile R20291 8469728 YP_003217865.1 CDS CDR20291_1368 NC_013316.1 1617665 1618105 R acetyltransferase complement(1617665..1618105) Clostridium difficile R20291 8469725 YP_003217866.1 CDS CDR20291_1369 NC_013316.1 1618215 1619246 D hypothetical protein 1618215..1619246 Clostridium difficile R20291 8467820 YP_003217867.1 CDS tyrR NC_013316.1 1619722 1620930 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1619722..1620930 Clostridium difficile R20291 8467821 YP_003217868.1 CDS CDR20291_1371 NC_013316.1 1620991 1621956 R polysaccharide deacetylase complement(1620991..1621956) Clostridium difficile R20291 8470408 YP_003217869.1 CDS CDR20291_1372 NC_013316.1 1622234 1623202 D hypothetical protein 1622234..1623202 Clostridium difficile R20291 8467822 YP_003217870.1 CDS CDR20291_1373 NC_013316.1 1623425 1623970 D rubrerythrin 1623425..1623970 Clostridium difficile R20291 8467823 YP_003217871.1 CDS CDR20291_1374 NC_013316.1 1624061 1625209 D iron-sulfur protein 1624061..1625209 Clostridium difficile R20291 8467824 YP_003217872.1 CDS pyrC NC_013316.1 1625262 1626527 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1625262..1626527 Clostridium difficile R20291 8467825 YP_003217873.1 CDS CDR20291_1376 NC_013316.1 1626813 1628045 R ABC transporter permease complement(1626813..1628045) Clostridium difficile R20291 8470139 YP_003217874.1 CDS CDR20291_1377 NC_013316.1 1628048 1628722 R ABC transporter ATP-binding protein complement(1628048..1628722) Clostridium difficile R20291 8467826 YP_003217875.1 CDS CDR20291_1378 NC_013316.1 1628730 1629959 R ABC transporter permease complement(1628730..1629959) Clostridium difficile R20291 8467827 YP_003217876.1 CDS CDR20291_1379 NC_013316.1 1630071 1631075 R two-component sensor histidine kinase complement(1630071..1631075) Clostridium difficile R20291 8467828 YP_003217877.1 CDS CDR20291_1380 NC_013316.1 1631099 1631773 R two-component response regulator complement(1631099..1631773) Clostridium difficile R20291 8467829 YP_003217878.1 CDS CDR20291_1381 NC_013316.1 1632061 1632828 D ABC transporter ATP-binding protein 1632061..1632828 Clostridium difficile R20291 8467830 YP_003217879.1 CDS CDR20291_1382 NC_013316.1 1632815 1634752 D ABC transporter permease 1632815..1634752 Clostridium difficile R20291 8467831 YP_003217880.1 CDS CDR20291_1383 NC_013316.1 1634977 1636590 D gamma-glutamyltranspeptidase 1634977..1636590 Clostridium difficile R20291 8467832 YP_003217881.1 CDS sseA NC_013316.1 1636723 1637574 R 3-mercaptopyruvate sulfurtransferase complement(1636723..1637574) Clostridium difficile R20291 8467833 YP_003217882.1 CDS CDR20291_1385 NC_013316.1 1638185 1639093 D ferredoxin-NADP(+) reductase subunit alpha 1638185..1639093 Clostridium difficile R20291 8470342 YP_003217883.1 CDS aspB NC_013316.1 1639093 1640487 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 1639093..1640487 Clostridium difficile R20291 8467834 YP_003217884.1 CDS CDR20291_1387 NC_013316.1 1640853 1643072 D signaling protein 1640853..1643072 Clostridium difficile R20291 8469518 YP_003217885.1 CDS CDR20291_1388 NC_013316.1 1643150 1643965 D ABC transporter ATP-binding protein 1643150..1643965 Clostridium difficile R20291 8467835 YP_003217886.1 CDS CDR20291_1389 NC_013316.1 1643965 1645845 D ABC transporter permease 1643965..1645845 Clostridium difficile R20291 8467836 YP_003217887.1 CDS CDR20291_1390 NC_013316.1 1645964 1647355 D drug/sodium antiporter 1645964..1647355 Clostridium difficile R20291 8467837 YP_003217888.1 CDS CDR20291_1391 NC_013316.1 1647462 1648502 D hypothetical protein 1647462..1648502 Clostridium difficile R20291 8467838 YP_003217889.1 CDS CDR20291_1392 NC_013316.1 1648991 1649644 D acyl carrier protein phosphodiesterase 1648991..1649644 Clostridium difficile R20291 8467839 YP_003217890.1 CDS CDR20291_1393 NC_013316.1 1649720 1649929 D hypothetical protein 1649720..1649929 Clostridium difficile R20291 8467840 YP_003217891.1 CDS CDR20291_1394 NC_013316.1 1650069 1650635 R hypothetical protein complement(1650069..1650635) Clostridium difficile R20291 8467841 YP_003217892.1 CDS CDR20291_1395 NC_013316.1 1650796 1651449 D hemolysin-like membrane protein 1650796..1651449 Clostridium difficile R20291 8467842 YP_003217893.1 CDS hisZ NC_013316.1 1652311 1653255 D ATP phosphoribosyltransferase regulatory subunit 1652311..1653255 Clostridium difficile R20291 8467843 YP_003217894.1 CDS hisG NC_013316.1 1653277 1653903 D ATP phosphoribosyltransferase 1653277..1653903 Clostridium difficile R20291 8469878 YP_003217895.1 CDS hisC NC_013316.1 1653937 1654986 D histidinol-phosphate aminotransferase 1653937..1654986 Clostridium difficile R20291 8469873 YP_003217896.1 CDS hisB NC_013316.1 1654989 1655567 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 1654989..1655567 Clostridium difficile R20291 8469870 YP_003217897.1 CDS hisH NC_013316.1 1655569 1656174 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1655569..1656174 Clostridium difficile R20291 8469869 YP_003217898.1 CDS hisA NC_013316.1 1656171 1656893 D 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methyliden eamino] imidazole-4-carboxamide isomerase 1656171..1656893 Clostridium difficile R20291 8469874 YP_003217899.1 CDS hisF NC_013316.1 1656875 1657633 D imidazole glycerol phosphate synthase subunit 1656875..1657633 Clostridium difficile R20291 8469868 YP_003217900.1 CDS hisI NC_013316.1 1657661 1658329 D bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 1657661..1658329 Clostridium difficile R20291 8469872 YP_003217901.1 CDS CDR20291_1404 NC_013316.1 1659115 1660458 D amino acid permease 1659115..1660458 Clostridium difficile R20291 8469875 YP_003217902.1 CDS CDR20291_1405 NC_013316.1 1661213 1662046 D polysaccharide deacetylase 1661213..1662046 Clostridium difficile R20291 8467844 YP_003217903.1 CDS CDR20291_1406 NC_013316.1 1662139 1663071 D peptidyl-prolyl isomerase 1662139..1663071 Clostridium difficile R20291 8467845 YP_003217904.1 CDS sigV NC_013316.1 1663123 1663605 D RNA polymerase sigma factor 1663123..1663605 Clostridium difficile R20291 8467846 YP_003217905.1 CDS CDR20291_1408 NC_013316.1 1663617 1664486 D hypothetical protein 1663617..1664486 Clostridium difficile R20291 8470281 YP_003217906.1 CDS CDR20291_1409 NC_013316.1 1664529 1665284 D hypothetical protein 1664529..1665284 Clostridium difficile R20291 8467847 YP_003217907.1 CDS CDR20291_1410 NC_013316.1 1665326 1666147 D dehydrogenase accessory protein 1665326..1666147 Clostridium difficile R20291 8467848 YP_003217908.1 CDS CDR20291_1411 NC_013316.1 1666152 1666913 D hypothetical protein 1666152..1666913 Clostridium difficile R20291 8467849 YP_003217909.1 CDS CDR20291_1412 NC_013316.1 1667444 1667683 D hypothetical protein 1667444..1667683 Clostridium difficile R20291 8467850 YP_003217910.1 CDS ilvC NC_013316.1 1667953 1668948 D ketol-acid reductoisomerase 1667953..1668948 Clostridium difficile R20291 8467851 YP_003217911.1 CDS ilvB NC_013316.1 1669001 1670689 D acetolactate synthase large subunit 1669001..1670689 Clostridium difficile R20291 8469899 YP_003217912.1 CDS CDR20291_1415 NC_013316.1 1671047 1672177 R prophage lambdaba04, site-specific recombinase, phage integrase family complement(1671047..1672177) Clostridium difficile R20291 8469898 YP_003217913.1 CDS CDR20291_1416 NC_013316.1 1672256 1672963 R hypothetical protein complement(1672256..1672963) Clostridium difficile R20291 8467852 YP_003217914.1 CDS CDR20291_1417 NC_013316.1 1672976 1673845 R HipA-like protein complement(1672976..1673845) Clostridium difficile R20291 8467853 YP_003217915.1 CDS CDR20291_1418 NC_013316.1 1674465 1674971 R hypothetical protein complement(1674465..1674971) Clostridium difficile R20291 8467854 YP_003217916.1 CDS CDR20291_1419 NC_013316.1 1676376 1677185 D hypothetical protein 1676376..1677185 Clostridium difficile R20291 8467855 YP_003217917.1 CDS CDR20291_1420 NC_013316.1 1678722 1679159 D hypothetical protein 1678722..1679159 Clostridium difficile R20291 8467856 YP_003217918.1 CDS CDR20291_1421 NC_013316.1 1679171 1680337 D hypothetical protein 1679171..1680337 Clostridium difficile R20291 8467857 YP_003217919.1 CDS CDR20291_1422 NC_013316.1 1680740 1681312 D hypothetical protein 1680740..1681312 Clostridium difficile R20291 8467858 YP_003217920.1 CDS CDR20291_1423 NC_013316.1 1681335 1681907 D hypothetical protein 1681335..1681907 Clostridium difficile R20291 8467859 YP_003217921.1 CDS CDR20291_1424 NC_013316.1 1681907 1683865 D dna-directed dna polymerase i 1681907..1683865 Clostridium difficile R20291 8467860 YP_003217922.1 CDS CDR20291_1425 NC_013316.1 1683877 1686294 D virulence-associated protein e 1683877..1686294 Clostridium difficile R20291 8467861 YP_003217923.1 CDS CDR20291_1426 NC_013316.1 1686851 1688221 D subname: full=phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; snf2-related protein 1686851..1688221 Clostridium difficile R20291 8467862 YP_003217924.1 CDS CDR20291_1427 NC_013316.1 1688375 1688854 D hypothetical protein 1688375..1688854 Clostridium difficile R20291 8467863 YP_003217925.1 CDS CDR20291_1428 NC_013316.1 1689137 1689589 D hypothetical protein 1689137..1689589 Clostridium difficile R20291 8467864 YP_003217926.1 CDS CDR20291_1429 NC_013316.1 1689881 1690855 D hypothetical protein 1689881..1690855 Clostridium difficile R20291 8467865 YP_003217927.1 CDS CDR20291_1430 NC_013316.1 1690876 1691385 D hypothetical protein 1690876..1691385 Clostridium difficile R20291 8467866 YP_003217928.1 CDS CDR20291_1431 NC_013316.1 1691455 1692147 D phage DNA-binding protein 1691455..1692147 Clostridium difficile R20291 8467867 YP_003217929.1 CDS CDR20291_1432 NC_013316.1 1692125 1693378 D phage terminase large subunit 1692125..1693378 Clostridium difficile R20291 8467868 YP_003217930.1 CDS CDR20291_1433 NC_013316.1 1693384 1694826 D phage portal protein 1693384..1694826 Clostridium difficile R20291 8467869 YP_003217931.1 CDS CDR20291_1434 NC_013316.1 1694816 1696351 D phage protein 1694816..1696351 Clostridium difficile R20291 8467870 YP_003217932.1 CDS CDR20291_1435 NC_013316.1 1696669 1697232 D scaffold protein 1696669..1697232 Clostridium difficile R20291 8467871 YP_003217933.1 CDS CDR20291_1436 NC_013316.1 1697244 1698134 D phage major capsid protein 1697244..1698134 Clostridium difficile R20291 8467872 YP_003217934.1 CDS CDR20291_1437 NC_013316.1 1698387 1698797 D hypothetical protein 1698387..1698797 Clostridium difficile R20291 8467873 YP_003217935.1 CDS CDR20291_1438 NC_013316.1 1698791 1699138 D phage protein 1698791..1699138 Clostridium difficile R20291 8467874 YP_003217936.1 CDS CDR20291_1439 NC_013316.1 1699517 1700344 D hypothetical protein 1699517..1700344 Clostridium difficile R20291 8467875 YP_003217937.1 CDS CDR20291_1440 NC_013316.1 1700693 1701130 D phage protein 1700693..1701130 Clostridium difficile R20291 8467876 YP_003217938.1 CDS CDR20291_1441 NC_013316.1 1701300 1702610 D phage protein 1701300..1702610 Clostridium difficile R20291 8467877 YP_003217939.1 CDS CDR20291_1442 NC_013316.1 1702627 1703097 D phage protein 1702627..1703097 Clostridium difficile R20291 8467878 YP_003217940.1 CDS CDR20291_1443 NC_013316.1 1703156 1703983 D hypothetical protein 1703156..1703983 Clostridium difficile R20291 8467879 YP_003217941.1 CDS CDR20291_1444 NC_013316.1 1704055 1704495 D phage protein 1704055..1704495 Clostridium difficile R20291 8467880 YP_003217942.1 CDS CDR20291_1445 NC_013316.1 1704836 1704997 D hypothetical protein 1704836..1704997 Clostridium difficile R20291 8467881 YP_003217943.1 CDS CDR20291_1446 NC_013316.1 1706641 1707507 D prophage antirepressor-related protein 1706641..1707507 Clostridium difficile R20291 8467882 YP_003217944.1 CDS CDR20291_1447 NC_013316.1 1708372 1708899 D hypothetical protein 1708372..1708899 Clostridium difficile R20291 8467883 YP_003217945.1 CDS CDR20291_1448 NC_013316.1 1709037 1709804 D hypothetical protein 1709037..1709804 Clostridium difficile R20291 8467884 YP_003217946.1 CDS CDR20291_1449 NC_013316.1 1709870 1712242 D phage tail tape measure protein 1709870..1712242 Clostridium difficile R20291 8467885 YP_003217947.1 CDS CDR20291_1450 NC_013316.1 1712259 1712948 D phage cell wall hydrolase 1712259..1712948 Clostridium difficile R20291 8467886 YP_003217948.1 CDS CDR20291_1451 NC_013316.1 1712956 1714833 D phage cell wall hydrolase 1712956..1714833 Clostridium difficile R20291 8467887 YP_003217949.1 CDS CDR20291_1452 NC_013316.1 1714847 1715107 D phage protein 1714847..1715107 Clostridium difficile R20291 8467888 YP_003217950.1 CDS CDR20291_1453 NC_013316.1 1715112 1715531 D phage protein 1715112..1715531 Clostridium difficile R20291 8467889 YP_003217951.1 CDS CDR20291_1454 NC_013316.1 1715544 1716581 D phage tail protein 1715544..1716581 Clostridium difficile R20291 8467890 YP_003217952.1 CDS CDR20291_1455 NC_013316.1 1716574 1717191 D phage protein 1716574..1717191 Clostridium difficile R20291 8467891 YP_003217953.1 CDS CDR20291_1456 NC_013316.1 1717203 1718228 D phage tail fiber protein 1717203..1718228 Clostridium difficile R20291 8467892 YP_003217954.1 CDS CDR20291_1457 NC_013316.1 1718245 1719771 D hypothetical protein 1718245..1719771 Clostridium difficile R20291 8467893 YP_003217955.1 CDS CDR20291_1458 NC_013316.1 1719786 1720079 D hypothetical protein 1719786..1720079 Clostridium difficile R20291 8467894 YP_003217956.1 CDS CDR20291_1459 NC_013316.1 1720079 1720261 D hypothetical protein 1720079..1720261 Clostridium difficile R20291 8467895 YP_003217957.1 CDS CDR20291_1460 NC_013316.1 1720295 1720861 D hypothetical protein 1720295..1720861 Clostridium difficile R20291 8467896 YP_003217958.1 CDS CDR20291_1461 NC_013316.1 1721186 1721443 D holin 1721186..1721443 Clostridium difficile R20291 8467897 YP_003217959.1 CDS CDR20291_1462 NC_013316.1 1721704 1722567 D hypothetical protein 1721704..1722567 Clostridium difficile R20291 8467898 YP_003217960.1 CDS CDR20291_1463 NC_013316.1 1722646 1723458 D n-acetylmuramoyl-l-alanine amidase 1722646..1723458 Clostridium difficile R20291 8467899 YP_003217961.1 CDS CDR20291_1464 NC_013316.1 1723552 1725951 D penicillin-binding protein 1723552..1725951 Clostridium difficile R20291 8467900 YP_003217962.1 CDS CDR20291_1465 NC_013316.1 1726872 1727549 D manganese-containing catalase 1726872..1727549 Clostridium difficile R20291 8467901 YP_003217963.1 CDS CDR20291_1466 NC_013316.1 1727723 1729759 D hypothetical protein 1727723..1729759 Clostridium difficile R20291 8467902 YP_003217964.1 CDS CDR20291_1467 NC_013316.1 1729950 1730588 R MarR family transcriptional regulator complement(1729950..1730588) Clostridium difficile R20291 8467903 YP_003217965.1 CDS CDR20291_1469 NC_013316.1 1732430 1733185 D transposase-like protein b 1732430..1733185 Clostridium difficile R20291 8467905 YP_003217966.1 CDS CDR20291_1470 NC_013316.1 1734176 1735390 D transcriptional regulator 1734176..1735390 Clostridium difficile R20291 8467906 YP_003217967.1 CDS CDR20291_1471 NC_013316.1 1735810 1736349 R hypothetical protein complement(1735810..1736349) Clostridium difficile R20291 8467907 YP_003217968.1 CDS CDR20291_1472 NC_013316.1 1736687 1737484 D hypothetical protein 1736687..1737484 Clostridium difficile R20291 8467908 YP_003217969.1 CDS CDR20291_1473 NC_013316.1 1737594 1738184 D arylesterase 1737594..1738184 Clostridium difficile R20291 8467909 YP_003217970.1 CDS pgm1 NC_013316.1 1738196 1739947 D phosphoglucomutase 1738196..1739947 Clostridium difficile R20291 8467910 YP_003217971.1 CDS CDR20291_1475 NC_013316.1 1740161 1741000 D membrane-associated ribonuclease 1740161..1741000 Clostridium difficile R20291 8470070 YP_003217972.1 CDS CDR20291_1476 NC_013316.1 1741517 1743373 D two-component histidine kinase 1741517..1743373 Clostridium difficile R20291 8467911 YP_003217973.1 CDS hom2 NC_013316.1 1744082 1745299 D homoserine dehydrogenase 1744082..1745299 Clostridium difficile R20291 8467912 YP_003217974.1 CDS CDR20291_1478 NC_013316.1 1745413 1745907 D hypothetical protein 1745413..1745907 Clostridium difficile R20291 8469880 YP_003217975.1 CDS hisD NC_013316.1 1746172 1747437 D histidinol dehydrogenase 1746172..1747437 Clostridium difficile R20291 8467913 YP_003217976.1 CDS CDR20291_1480 NC_013316.1 1747640 1748392 R hypothetical protein complement(1747640..1748392) Clostridium difficile R20291 8469871 YP_003217977.1 CDS CDR20291_1481 NC_013316.1 1748510 1748779 R hypothetical protein complement(1748510..1748779) Clostridium difficile R20291 8467914 YP_003217978.1 CDS CDR20291_1482 NC_013316.1 1749254 1750348 D sugar metabolism repressor 1749254..1750348 Clostridium difficile R20291 8467915 YP_003217979.1 CDS CDR20291_1483 NC_013316.1 1750350 1751300 D N-acetylglucosamine kinase 1750350..1751300 Clostridium difficile R20291 8467916 YP_003217980.1 CDS CDR20291_1484 NC_013316.1 1751293 1752477 D hypothetical protein 1751293..1752477 Clostridium difficile R20291 8467917 YP_003217981.1 CDS CDR20291_1485 NC_013316.1 1752508 1753986 D ribose ABC transporter ATP-binding protein 1752508..1753986 Clostridium difficile R20291 8467918 YP_003217982.1 CDS CDR20291_1486 NC_013316.1 1754009 1754959 D ribose ABC transporter permease 1754009..1754959 Clostridium difficile R20291 8467919 YP_003217983.1 CDS CDR20291_1487 NC_013316.1 1754980 1755942 D ribose ABC transporter substrate-binding protein 1754980..1755942 Clostridium difficile R20291 8467920 YP_003217984.1 CDS CDR20291_1488 NC_013316.1 1756314 1756946 D hypothetical protein 1756314..1756946 Clostridium difficile R20291 8467921 YP_003217985.1 CDS kdpA NC_013316.1 1757496 1759172 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 1757496..1759172 Clostridium difficile R20291 8467922 YP_003217986.1 CDS kdpB NC_013316.1 1759197 1761254 D One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 1759197..1761254 Clostridium difficile R20291 8469921 YP_003217987.1 CDS kdpC NC_013316.1 1761258 1761899 D one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 1761258..1761899 Clostridium difficile R20291 8469922 YP_003217988.1 CDS cysM NC_013316.1 1762136 1763044 D O-acetylserine sulfhydrylase 1762136..1763044 Clostridium difficile R20291 8469923 YP_003217989.1 CDS cysA NC_013316.1 1763062 1763661 D serine acetyltransferase 1763062..1763661 Clostridium difficile R20291 8469638 YP_003217990.1 CDS map2 NC_013316.1 1764063 1764932 R methionine aminopeptidase complement(1764063..1764932) Clostridium difficile R20291 8469635 YP_003217991.1 CDS CDR20291_1495 NC_013316.1 1765129 1766379 R hypothetical protein complement(1765129..1766379) Clostridium difficile R20291 8469955 YP_003217992.1 CDS CDR20291_1496 NC_013316.1 1766664 1766975 D endonuclease 1766664..1766975 Clostridium difficile R20291 8467923 YP_003217993.1 CDS thiD NC_013316.1 1767260 1768054 D phosphomethylpyrimidine kinase 1767260..1768054 Clostridium difficile R20291 8467924 YP_003217994.1 CDS thiK NC_013316.1 1768078 1768866 D hydroxyethylthiazole kinase 1768078..1768866 Clostridium difficile R20291 8470364 YP_003217995.1 CDS thiE1 NC_013316.1 1768889 1769521 D thiamine-phosphate pyrophosphorylase 1768889..1769521 Clostridium difficile R20291 8470371 YP_003217996.1 CDS CDR20291_1500 NC_013316.1 1769660 1769962 D PTS system transporter subunit IIB 1769660..1769962 Clostridium difficile R20291 8470365 YP_003217997.1 CDS CDR20291_1501 NC_013316.1 1770028 1770783 R ABC transporter permease complement(1770028..1770783) Clostridium difficile R20291 8467925 YP_003217998.1 CDS CDR20291_1502 NC_013316.1 1770771 1771733 R ABC transporter ATP-binding protein complement(1770771..1771733) Clostridium difficile R20291 8467926 YP_003217999.1 CDS CDR20291_1503 NC_013316.1 1771737 1772144 R hypothetical protein complement(1771737..1772144) Clostridium difficile R20291 8467927 YP_003218000.1 CDS CDR20291_1504 NC_013316.1 1772551 1772907 D GntR family transcriptional regulator 1772551..1772907 Clostridium difficile R20291 8467928 YP_003218001.1 CDS CDR20291_1505 NC_013316.1 1772961 1773695 D ABC transporter ATP-binding protein 1772961..1773695 Clostridium difficile R20291 8467929 YP_003218002.1 CDS CDR20291_1506 NC_013316.1 1773688 1774512 D ABC transporter permease 1773688..1774512 Clostridium difficile R20291 8467930 YP_003218003.1 CDS CDR20291_1507 NC_013316.1 1774524 1775723 D hypothetical protein 1774524..1775723 Clostridium difficile R20291 8467931 YP_003218004.1 CDS CDR20291_1508 NC_013316.1 1775732 1776544 D hypothetical protein 1775732..1776544 Clostridium difficile R20291 8467932 YP_003218005.1 CDS CDR20291_1509 NC_013316.1 1776555 1777823 D hypothetical protein 1776555..1777823 Clostridium difficile R20291 8467933 YP_003218006.1 CDS CDR20291_1510 NC_013316.1 1778189 1779370 D amidohydrolase 1778189..1779370 Clostridium difficile R20291 8467934 YP_003218007.1 CDS CDR20291_1511 NC_013316.1 1779512 1780438 R hypothetical protein complement(1779512..1780438) Clostridium difficile R20291 8467935 YP_003218008.1 CDS CDR20291_1512 NC_013316.1 1780682 1781476 D sodium extrusion ABC transporter ATP-binding protein 1780682..1781476 Clostridium difficile R20291 8467936 YP_003218009.1 CDS CDR20291_1513 NC_013316.1 1781477 1783537 D sodium extrusion ABC transporter permease 1781477..1783537 Clostridium difficile R20291 8467937 YP_003218010.1 CDS CDR20291_1514 NC_013316.1 1784219 1785763 D signaling protein 1784219..1785763 Clostridium difficile R20291 8467938 YP_003218011.1 CDS CDR20291_1515 NC_013316.1 1785939 1786307 D GntR family transcriptional regulator 1785939..1786307 Clostridium difficile R20291 8467939 YP_003218012.1 CDS CDR20291_1516 NC_013316.1 1786309 1787034 D ABC transporter ATP-binding protein 1786309..1787034 Clostridium difficile R20291 8467940 YP_003218013.1 CDS CDR20291_1517 NC_013316.1 1787028 1787792 D ABC transporter permease 1787028..1787792 Clostridium difficile R20291 8467941 YP_003218014.1 CDS CDR20291_1518 NC_013316.1 1788014 1789264 D permease 1788014..1789264 Clostridium difficile R20291 8467942 YP_003218015.1 CDS CDR20291_1519 NC_013316.1 1789455 1790339 D mechanosensitive ion channel protein 1789455..1790339 Clostridium difficile R20291 8467943 YP_003218016.1 CDS CDR20291_1520 NC_013316.1 1790701 1791318 D lipoprotein 1790701..1791318 Clostridium difficile R20291 8467944 YP_003218017.1 CDS CDR20291_1521 NC_013316.1 1791426 1793957 D nitric oxide reductase flavoprotein 1791426..1793957 Clostridium difficile R20291 8467945 YP_003218018.1 CDS vanR NC_013316.1 1794391 1795092 D two-component response regulator 1794391..1795092 Clostridium difficile R20291 8467946 YP_003218019.1 CDS vanS NC_013316.1 1795142 1796224 D two-component sensor histidine kinase 1795142..1796224 Clostridium difficile R20291 8470424 YP_003218020.1 CDS vanG NC_013316.1 1796485 1797585 D vancomycin/teicoplanin A-type resistance protein 1796485..1797585 Clostridium difficile R20291 8470425 YP_003218021.1 CDS CDR20291_1525 NC_013316.1 1797585 1798388 D D-alanyl-D-alanine carboxypeptidase 1797585..1798388 Clostridium difficile R20291 8470423 YP_003218022.1 CDS vanTG NC_013316.1 1798406 1800544 D serine/alanine racemase 1798406..1800544 Clostridium difficile R20291 8467947 YP_003218023.1 CDS CDR20291_1527 NC_013316.1 1800858 1801478 D hypothetical protein 1800858..1801478 Clostridium difficile R20291 8470426 YP_003218024.1 CDS CDR20291_1528 NC_013316.1 1801644 1802213 R membrane-associated metal-dependent hydrolase complement(1801644..1802213) Clostridium difficile R20291 8467948 YP_003218025.1 CDS sodA NC_013316.1 1802293 1802997 R superoxide dismutase complement(1802293..1802997) Clostridium difficile R20291 8467949 YP_003218026.1 CDS asnB NC_013316.1 1803170 1805044 D asparagine synthetase 1803170..1805044 Clostridium difficile R20291 8470291 YP_003218027.1 CDS CDR20291_1531 NC_013316.1 1805136 1806572 R serine protease complement(1805136..1806572) Clostridium difficile R20291 8469516 YP_003218028.1 CDS CDR20291_1532 NC_013316.1 1806901 1807479 D tellurium resistance protein 1806901..1807479 Clostridium difficile R20291 8467950 YP_003218029.1 CDS CDR20291_1533 NC_013316.1 1807518 1808096 D tellurium resistance protein 1807518..1808096 Clostridium difficile R20291 8467951 YP_003218030.1 CDS CDR20291_1534 NC_013316.1 1808182 1808811 D tellurium resistance protein 1808182..1808811 Clostridium difficile R20291 8467952 YP_003218031.1 CDS CDR20291_1535 NC_013316.1 1808795 1811560 D calcium-transporting ATPase 1808795..1811560 Clostridium difficile R20291 8467953 YP_003218032.1 CDS CDR20291_1536 NC_013316.1 1811647 1813209 D hypothetical protein 1811647..1813209 Clostridium difficile R20291 8467954 YP_003218033.1 CDS CDR20291_1537 NC_013316.1 1813210 1814346 D tellurite resistance protein 1813210..1814346 Clostridium difficile R20291 8467955 YP_003218034.1 CDS CDR20291_1538 NC_013316.1 1814410 1815486 D hypothetical protein 1814410..1815486 Clostridium difficile R20291 8467956 YP_003218035.1 CDS CDR20291_1539 NC_013316.1 1815464 1816702 D hypothetical protein 1815464..1816702 Clostridium difficile R20291 8467957 YP_003218036.1 CDS CDR20291_1540 NC_013316.1 1816756 1817844 D hypothetical protein 1816756..1817844 Clostridium difficile R20291 8467958 YP_003218037.1 CDS CDR20291_1541 NC_013316.1 1817872 1818663 D hypothetical protein 1817872..1818663 Clostridium difficile R20291 8467959 YP_003218038.1 CDS CDR20291_1542 NC_013316.1 1818778 1819332 R transcriptional regulator complement(1818778..1819332) Clostridium difficile R20291 8467960 YP_003218039.1 CDS CDR20291_1543 NC_013316.1 1819512 1820729 D hypothetical protein 1819512..1820729 Clostridium difficile R20291 8467961 YP_003218040.1 CDS CDR20291_1544 NC_013316.1 1820786 1821766 D dipeptidase 1820786..1821766 Clostridium difficile R20291 8467962 YP_003218041.1 CDS CDR20291_1545 NC_013316.1 1822013 1822966 D iron compound ABC transporter permease 1822013..1822966 Clostridium difficile R20291 8467963 YP_003218042.1 CDS CDR20291_1546 NC_013316.1 1822956 1823912 D iron compound ABC transporter permease 1822956..1823912 Clostridium difficile R20291 8467964 YP_003218043.1 CDS CDR20291_1547 NC_013316.1 1823909 1824664 D iron compound ABC transporter ATP-binding protein 1823909..1824664 Clostridium difficile R20291 8467965 YP_003218044.1 CDS CDR20291_1548 NC_013316.1 1824756 1825721 D iron compound ABC transporter substrate-binding protein 1824756..1825721 Clostridium difficile R20291 8467966 YP_003218045.1 CDS CDR20291_1549 NC_013316.1 1826541 1828061 D signaling protein 1826541..1828061 Clostridium difficile R20291 8467967 YP_003218046.1 CDS CDR20291_1550 NC_013316.1 1828353 1828952 R tellurium resistance protein complement(1828353..1828952) Clostridium difficile R20291 8467968 YP_003218047.1 CDS CDR20291_1551 NC_013316.1 1829055 1829852 R lipoprotein complement(1829055..1829852) Clostridium difficile R20291 8467969 YP_003218048.1 CDS lplA NC_013316.1 1830162 1831148 R lipoate-protein ligase complement(1830162..1831148) Clostridium difficile R20291 8467970 YP_003218049.1 CDS CDR20291_1553 NC_013316.1 1831632 1833362 D Na+/H+ antiporter 1831632..1833362 Clostridium difficile R20291 8469940 YP_003218050.1 CDS CDR20291_1554 NC_013316.1 1833784 1833957 D hypothetical protein 1833784..1833957 Clostridium difficile R20291 8467971 YP_003218051.1 CDS CDR20291_1555 NC_013316.1 1834763 1837237 D bifunctional glycine dehydrogenase/aminomethyl transferase protein 1834763..1837237 Clostridium difficile R20291 8467972 YP_003218052.1 CDS gcvPB NC_013316.1 1837237 1838694 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1837237..1838694 Clostridium difficile R20291 8467973 YP_003218053.1 CDS CDR20291_1557 NC_013316.1 1839117 1841474 D cation-transporting ATPase 1839117..1841474 Clostridium difficile R20291 8469803 YP_003218054.1 CDS CDR20291_1558 NC_013316.1 1841560 1841877 R hypothetical protein complement(1841560..1841877) Clostridium difficile R20291 8467974 YP_003218055.1 CDS CDR20291_1559 NC_013316.1 1842216 1842971 D hypothetical protein 1842216..1842971 Clostridium difficile R20291 8467975 YP_003218056.1 CDS guaD NC_013316.1 1843610 1844881 R guanine deaminase complement(1843610..1844881) Clostridium difficile R20291 8467976 YP_003218057.1 CDS CDR20291_1561 NC_013316.1 1847716 1848267 R transcriptional regulator complement(1847716..1848267) Clostridium difficile R20291 8469851 YP_003218058.1 CDS cysK NC_013316.1 1848458 1849420 D cysteine synthase A 1848458..1849420 Clostridium difficile R20291 8467977 YP_003218059.1 CDS CDR20291_1563 NC_013316.1 1849715 1851559 D glycerophosphoryl diester phosphodiesterase 1849715..1851559 Clostridium difficile R20291 8469637 YP_003218060.1 CDS CDR20291_1564 NC_013316.1 1851881 1852465 D sugar O-acetyltransferase 1851881..1852465 Clostridium difficile R20291 8467978 YP_003218061.1 CDS CDR20291_1565 NC_013316.1 1854359 1855339 D hypothetical protein 1854359..1855339 Clostridium difficile R20291 8467979 YP_003218062.1 CDS CDR20291_1566 NC_013316.1 1855353 1856240 D ABC transporter ATP-binding protein 1855353..1856240 Clostridium difficile R20291 8467980 YP_003218063.1 CDS CDR20291_1567 NC_013316.1 1856246 1857019 D ABC transporter permease 1856246..1857019 Clostridium difficile R20291 8467981 YP_003218064.1 CDS CDR20291_1568 NC_013316.1 1857131 1857856 D two-component response regulator 1857131..1857856 Clostridium difficile R20291 8467982 YP_003218065.1 CDS CDR20291_1569 NC_013316.1 1857860 1859263 D two-component sensor histidine kinase 1857860..1859263 Clostridium difficile R20291 8467983 YP_003218066.1 CDS CDR20291_1570 NC_013316.1 1859274 1860098 D hypothetical protein 1859274..1860098 Clostridium difficile R20291 8467984 YP_003218067.1 CDS CDR20291_1571 NC_013316.1 1860423 1861043 R NADPH-dependent FMN reductase complement(1860423..1861043) Clostridium difficile R20291 8467985 YP_003218068.1 CDS CDR20291_1572 NC_013316.1 1861309 1861641 D transcriptional regulator 1861309..1861641 Clostridium difficile R20291 8467986 YP_003218069.1 CDS pcp NC_013316.1 1861760 1862401 R catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase complement(1861760..1862401) Clostridium difficile R20291 8467987 YP_003218070.1 CDS CDR20291_1574 NC_013316.1 1862422 1863354 R hypothetical protein complement(1862422..1863354) Clostridium difficile R20291 8470055 YP_003218071.1 CDS CDR20291_1575 NC_013316.1 1863376 1864059 R hypothetical protein complement(1863376..1864059) Clostridium difficile R20291 8467988 YP_003218072.1 CDS CDR20291_1577 NC_013316.1 1864587 1865060 R flavodoxin complement(1864587..1865060) Clostridium difficile R20291 8467990 YP_003218073.1 CDS CDR20291_1578 NC_013316.1 1865063 1865467 R FMN-binding exported protein complement(1865063..1865467) Clostridium difficile R20291 8467991 YP_003218074.1 CDS CDR20291_1579 NC_013316.1 1865442 1866071 R TetR family transcriptional regulator complement(1865442..1866071) Clostridium difficile R20291 8467992 YP_003218075.1 CDS iunH NC_013316.1 1866580 1867548 D inosine-uridine preferring nucleoside hydrolase 1866580..1867548 Clostridium difficile R20291 8467993 YP_003218076.1 CDS CDR20291_1581 NC_013316.1 1867550 1868113 D hypothetical protein 1867550..1868113 Clostridium difficile R20291 8469916 YP_003218077.1 CDS CDR20291_1582 NC_013316.1 1868121 1868810 D radical SAM protein 1868121..1868810 Clostridium difficile R20291 8467994 YP_003218078.1 CDS CDR20291_1583 NC_013316.1 1868937 1869665 D hypothetical protein 1868937..1869665 Clostridium difficile R20291 8467995 YP_003218079.1 CDS CDR20291_1584 NC_013316.1 1869679 1870353 D DNA-binding protein 1869679..1870353 Clostridium difficile R20291 8467996 YP_003218080.1 CDS CDR20291_1585 NC_013316.1 1870379 1871215 D lipoprotein 1870379..1871215 Clostridium difficile R20291 8467997 YP_003218081.1 CDS CDR20291_1586 NC_013316.1 1871231 1871902 D two-component response regulator 1871231..1871902 Clostridium difficile R20291 8467998 YP_003218082.1 CDS CDR20291_1587 NC_013316.1 1871892 1873124 D two-component sensor histidine kinase 1871892..1873124 Clostridium difficile R20291 8467999 YP_003218083.1 CDS trxA1 NC_013316.1 1873274 1873591 D thioredoxin 1873274..1873591 Clostridium difficile R20291 8468000 YP_003218084.1 CDS trxB1 NC_013316.1 1873608 1874486 D thioredoxin reductase 1873608..1874486 Clostridium difficile R20291 8470401 YP_003218085.1 CDS CDR20291_1590 NC_013316.1 1874756 1875124 D ArsR family transcriptional regulator 1874756..1875124 Clostridium difficile R20291 8470403 YP_003218086.1 CDS CDR20291_1591 NC_013316.1 1875127 1875498 D dinitrogenase iron-molybdenum cofactor 1875127..1875498 Clostridium difficile R20291 8468001 YP_003218087.1 CDS CDR20291_1592 NC_013316.1 1875642 1876097 R hypothetical protein complement(1875642..1876097) Clostridium difficile R20291 8468002 YP_003218088.1 CDS CDR20291_1593 NC_013316.1 1876136 1877401 R arsenical pump membrane protein precursor; arsenical pump membrane protein complement(1876136..1877401) Clostridium difficile R20291 8468003 YP_003218089.1 CDS CDR20291_1594 NC_013316.1 1877871 1879322 D sodium:amino acid symporter 1877871..1879322 Clostridium difficile R20291 8468004 YP_003218090.1 CDS ribH NC_013316.1 1879542 1880003 R riboflavin synthase subunit beta (6,7-dimethyl-8-ribityllumazine synthase) complement(1879542..1880003) Clostridium difficile R20291 8468005 YP_003218091.1 CDS ribA NC_013316.1 1880109 1881089 R riboflavin biosynthesis protein complement(1880109..1881089) Clostridium difficile R20291 8470173 YP_003218092.1 CDS ribB NC_013316.1 1881325 1881990 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1881325..1881990) Clostridium difficile R20291 8470169 YP_003218093.1 CDS ribD NC_013316.1 1882024 1883127 R bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase complement(1882024..1883127) Clostridium difficile R20291 8470170 YP_003218094.1 CDS recQ NC_013316.1 1883569 1886052 D ATP-dependent DNA helicase 1883569..1886052 Clostridium difficile R20291 8470172 YP_003218095.1 CDS thiC NC_013316.1 1886279 1887694 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 1886279..1887694 Clostridium difficile R20291 8470166 YP_003218096.1 CDS thiS NC_013316.1 1887748 1887942 D thiamine biosynthesis protein 1887748..1887942 Clostridium difficile R20291 8470363 YP_003218097.1 CDS thiF NC_013316.1 1887935 1888738 D thiamine biosynthesis protein 1887935..1888738 Clostridium difficile R20291 8470372 YP_003218098.1 CDS thiG NC_013316.1 1888924 1889571 D thiazole biosynthesis protein 1888924..1889571 Clostridium difficile R20291 8470367 YP_003218099.1 CDS thiH NC_013316.1 1889588 1890691 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 1889588..1890691 Clostridium difficile R20291 8470368 YP_003218100.1 CDS thiE2 NC_013316.1 1890692 1891381 D thiamine biosynthesis protein 1890692..1891381 Clostridium difficile R20291 8470369 YP_003218101.1 CDS CDR20291_1606 NC_013316.1 1891554 1892963 D C4-dicarboxylate anaerobic carrier 1891554..1892963 Clostridium difficile R20291 8470366 YP_003218102.1 CDS CDR20291_1607 NC_013316.1 1893480 1894847 D hypothetical protein 1893480..1894847 Clostridium difficile R20291 8468006 YP_003218103.1 CDS CDR20291_1608 NC_013316.1 1894872 1895480 D molybdopterin-guanine biosynthesis protein 1894872..1895480 Clostridium difficile R20291 8468007 YP_003218104.1 CDS CDR20291_1609 NC_013316.1 1895528 1895899 D hypothetical protein 1895528..1895899 Clostridium difficile R20291 8468008 YP_003218105.1 CDS CDR20291_1610 NC_013316.1 1896078 1896416 D hypothetical protein 1896078..1896416 Clostridium difficile R20291 8468009 YP_003218106.1 CDS moaB NC_013316.1 1896883 1897386 D molybdenum cofactor biosynthesis protein 1896883..1897386 Clostridium difficile R20291 8468010 YP_003218107.1 CDS moaA NC_013316.1 1897433 1898392 D molybdenum cofactor biosynthesis protein 1897433..1898392 Clostridium difficile R20291 8469972 YP_003218108.1 CDS moaC NC_013316.1 1898396 1898866 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1898396..1898866 Clostridium difficile R20291 8469971 YP_003218109.1 CDS CDR20291_1614 NC_013316.1 1898902 1899333 D molybdenum cofactor sulfurase 1898902..1899333 Clostridium difficile R20291 8469973 YP_003218110.1 CDS CDR20291_1615 NC_013316.1 1900133 1901428 D permease 1900133..1901428 Clostridium difficile R20291 8468011 YP_003218111.1 CDS CDR20291_1616 NC_013316.1 1901482 1902561 D hypothetical protein 1901482..1902561 Clostridium difficile R20291 8468012 YP_003218112.1 CDS CDR20291_1617 NC_013316.1 1902582 1904126 D hydantoinase 1902582..1904126 Clostridium difficile R20291 8468013 YP_003218113.1 CDS CDR20291_1618 NC_013316.1 1904289 1904831 R hypothetical protein complement(1904289..1904831) Clostridium difficile R20291 8468014 YP_003218114.1 CDS CDR20291_1619 NC_013316.1 1904979 1905263 R transcriptional regulator complement(1904979..1905263) Clostridium difficile R20291 8468015 YP_003218115.1 CDS CDR20291_1620 NC_013316.1 1905326 1906090 R acyltransferase complement(1905326..1906090) Clostridium difficile R20291 8468016 YP_003218116.1 CDS CDR20291_1621 NC_013316.1 1906372 1906638 R hypothetical protein complement(1906372..1906638) Clostridium difficile R20291 8468017 YP_003218117.1 CDS CDR20291_1622 NC_013316.1 1906681 1907490 R AraC family transcriptional regulator complement(1906681..1907490) Clostridium difficile R20291 8468018 YP_003218118.1 CDS CDR20291_1623 NC_013316.1 1907803 1908084 D hypothetical protein 1907803..1908084 Clostridium difficile R20291 8468019 YP_003218119.1 CDS CDR20291_1624 NC_013316.1 1908333 1908602 D hypothetical protein 1908333..1908602 Clostridium difficile R20291 8468020 YP_003218120.1 CDS CDR20291_1625 NC_013316.1 1908647 1908970 D hypothetical protein 1908647..1908970 Clostridium difficile R20291 8468021 YP_003218121.1 CDS CDR20291_1626 NC_013316.1 1910098 1911717 R sodium/phosphate cotransporter complement(1910098..1911717) Clostridium difficile R20291 8468022 YP_003218122.1 CDS CDR20291_1627 NC_013316.1 1912817 1913629 R ATP-binding protein complement(1912817..1913629) Clostridium difficile R20291 8468023 YP_003218123.1 CDS CDR20291_1628 NC_013316.1 1914051 1915202 D acetyltransferase 1914051..1915202 Clostridium difficile R20291 8468024 YP_003218124.1 CDS CDR20291_1629 NC_013316.1 1915320 1915958 D corrinoid protein 1915320..1915958 Clostridium difficile R20291 8468025 YP_003218125.1 CDS CDR20291_1630 NC_013316.1 1915959 1916981 D methyltransferase 1915959..1916981 Clostridium difficile R20291 8468026 YP_003218126.1 CDS CDR20291_1631 NC_013316.1 1916971 1917591 D hypothetical protein 1916971..1917591 Clostridium difficile R20291 8468027 YP_003218127.1 CDS CDR20291_1632 NC_013316.1 1917715 1918401 R hydrolase complement(1917715..1918401) Clostridium difficile R20291 8468028 YP_003218128.1 CDS CDR20291_1633 NC_013316.1 1918415 1918960 R transcriptional regulator complement(1918415..1918960) Clostridium difficile R20291 8468029 YP_003218129.1 CDS CDR20291_1634 NC_013316.1 1919170 1920435 D gluconate permease 1919170..1920435 Clostridium difficile R20291 8468030 YP_003218130.1 CDS CDR20291_1635 NC_013316.1 1920522 1922516 D two-component sensor histidine kinase 1920522..1922516 Clostridium difficile R20291 8468031 YP_003218131.1 CDS CDR20291_1636 NC_013316.1 1922516 1923838 D two-component response regulator 1922516..1923838 Clostridium difficile R20291 8468032 YP_003218132.1 CDS grdG NC_013316.1 1924117 1925403 D sarcosine reductase complex component B subunit alpha 1924117..1925403 Clostridium difficile R20291 8468033 YP_003218133.1 CDS grdF NC_013316.1 1925489 1926538 D sarcosine reductase complex component b subunit beta 1925489..1926538 Clostridium difficile R20291 8469841 YP_003218134.1 CDS CDR20291_1639 NC_013316.1 1927012 1927236 R ferrous iron transport protein A complement(1927012..1927236) Clostridium difficile R20291 8469840 YP_003218135.1 CDS gltC NC_013316.1 1927333 1928610 R sodium/glutamate symporter complement(1927333..1928610) Clostridium difficile R20291 8468034 YP_003218136.1 CDS add NC_013316.1 1928846 1929835 D catalyzes the formation of inosine from adenosine; adenosine deaminase 1928846..1929835 Clostridium difficile R20291 8469820 YP_003218137.1 CDS CDR20291_1642 NC_013316.1 1929907 1930647 D hypothetical protein 1929907..1930647 Clostridium difficile R20291 8469474 YP_003218138.1 CDS CDR20291_1643 NC_013316.1 1930847 1931998 D 2-hydroxyacyl-CoA dehydratase 1930847..1931998 Clostridium difficile R20291 8468035 YP_003218139.1 CDS hgdC NC_013316.1 1932023 1932778 D (R)-2-hydroxyglutaryl-CoA dehydratase subunit alpha 1932023..1932778 Clostridium difficile R20291 8468036 YP_003218140.1 CDS CDR20291_1645 NC_013316.1 1932970 1935357 D cell surface-associated cysteine protease 1932970..1935357 Clostridium difficile R20291 8469867 YP_003218141.1 CDS CDR20291_1646 NC_013316.1 1936110 1936700 D TetR family transcriptional regulator 1936110..1936700 Clostridium difficile R20291 8468037 YP_003218142.1 CDS CDR20291_1647 NC_013316.1 1936814 1937659 D ABC transporter ATP-binding protein 1936814..1937659 Clostridium difficile R20291 8468038 YP_003218143.1 CDS CDR20291_1648 NC_013316.1 1937656 1938333 D ABC transporter permease 1937656..1938333 Clostridium difficile R20291 8468039 YP_003218144.1 CDS CDR20291_1649 NC_013316.1 1938330 1939046 D ABC transporter permease 1938330..1939046 Clostridium difficile R20291 8468040 YP_003218145.1 CDS CDR20291_1650 NC_013316.1 1939143 1939406 D transcriptional regulator 1939143..1939406 Clostridium difficile R20291 8468041 YP_003218146.1 CDS def1 NC_013316.1 1939378 1939833 D peptide deformylase 1 1939378..1939833 Clostridium difficile R20291 8468042 YP_003218147.1 CDS CDR20291_1652 NC_013316.1 1939885 1940346 D hypothetical protein 1939885..1940346 Clostridium difficile R20291 8469654 YP_003218148.1 CDS CDR20291_1653 NC_013316.1 1940396 1941298 D radical SAM protein 1940396..1941298 Clostridium difficile R20291 8468043 YP_003218149.1 CDS CDR20291_1654 NC_013316.1 1941668 1942480 D hypothetical protein 1941668..1942480 Clostridium difficile R20291 8468044 YP_003218150.1 CDS CDR20291_1655 NC_013316.1 1943529 1944290 D iron-sulfur protein 1943529..1944290 Clostridium difficile R20291 8468045 YP_003218151.1 CDS CDR20291_1657 NC_013316.1 1945404 1945823 D hypothetical protein 1945404..1945823 Clostridium difficile R20291 8468047 YP_003218152.1 CDS CDR20291_1658 NC_013316.1 1945926 1946192 R hypothetical protein complement(1945926..1946192) Clostridium difficile R20291 8468048 YP_003218153.1 CDS CDR20291_1659 NC_013316.1 1946419 1947120 D hypothetical protein 1946419..1947120 Clostridium difficile R20291 8468049 YP_003218154.1 CDS CDR20291_1660 NC_013316.1 1947235 1947810 D Nudix family hydrolase 1947235..1947810 Clostridium difficile R20291 8468050 YP_003218155.1 CDS CDR20291_1661 NC_013316.1 1948134 1948598 D lipoprotein 1948134..1948598 Clostridium difficile R20291 8468051 YP_003218156.1 CDS gapA NC_013316.1 1949235 1950251 D glyceraldehyde-3-phosphate dehydrogenase 1 1949235..1950251 Clostridium difficile R20291 8468052 YP_003218157.1 CDS CDR20291_1663 NC_013316.1 1950646 1951815 D hypothetical protein 1950646..1951815 Clostridium difficile R20291 8469789 YP_003218158.1 CDS CDR20291_1664 NC_013316.1 1952196 1956449 D hypothetical protein 1952196..1956449 Clostridium difficile R20291 8468053 YP_003218159.1 CDS ogt2 NC_013316.1 1956598 1957092 D methylated-DNA--protein-cysteine methyltransferase 2 1956598..1957092 Clostridium difficile R20291 8468054 YP_003218160.1 CDS CDR20291_1666 NC_013316.1 1957208 1957585 D hypothetical protein 1957208..1957585 Clostridium difficile R20291 8470037 YP_003218161.1 CDS CDR20291_1667 NC_013316.1 1957773 1958231 D hypothetical protein 1957773..1958231 Clostridium difficile R20291 8468055 YP_003218162.1 CDS CDR20291_1668 NC_013316.1 1958862 1960169 D hypothetical protein 1958862..1960169 Clostridium difficile R20291 8468056 YP_003218163.1 CDS CDR20291_1669 NC_013316.1 1960643 1961446 D amino acid ABC transporter substrate-binding protein 1960643..1961446 Clostridium difficile R20291 8468057 YP_003218164.1 CDS CDR20291_1670 NC_013316.1 1961484 1962095 D amino acid ABC transporter permease 1961484..1962095 Clostridium difficile R20291 8468058 YP_003218165.1 CDS CDR20291_1671 NC_013316.1 1962127 1962798 D amino acid ABC transporter ATP-binding protein 1962127..1962798 Clostridium difficile R20291 8468059 YP_003218166.1 CDS CDR20291_1672 NC_013316.1 1963097 1963459 D arsenate reductase 1963097..1963459 Clostridium difficile R20291 8468060 YP_003218167.1 CDS CDR20291_1673 NC_013316.1 1963895 1964596 D hypothetical protein 1963895..1964596 Clostridium difficile R20291 8468061 YP_003218168.1 CDS CDR20291_1674 NC_013316.1 1964867 1965685 D hypothetical protein 1964867..1965685 Clostridium difficile R20291 8468062 YP_003218169.1 CDS CDR20291_1675 NC_013316.1 1965740 1966888 D methylase 1965740..1966888 Clostridium difficile R20291 8468063 YP_003218170.1 CDS CDR20291_1676 NC_013316.1 1967024 1968412 D lipoprotein 1967024..1968412 Clostridium difficile R20291 8468064 YP_003218171.1 CDS CDR20291_1677 NC_013316.1 1968405 1969139 D two-component response regulator 1968405..1969139 Clostridium difficile R20291 8468065 YP_003218172.1 CDS CDR20291_1678 NC_013316.1 1969142 1970575 D two-component sensor histidine kinase 1969142..1970575 Clostridium difficile R20291 8468066 YP_003218173.1 CDS truA2 NC_013316.1 1970597 1971334 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1970597..1971334 Clostridium difficile R20291 8468067 YP_003218174.1 CDS argG NC_013316.1 1971905 1973104 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1971905..1973104 Clostridium difficile R20291 8470399 YP_003218175.1 CDS CDR20291_1681 NC_013316.1 1973321 1974397 D hypothetical protein 1973321..1974397 Clostridium difficile R20291 8469501 YP_003218176.1 CDS CDR20291_1682 NC_013316.1 1974505 1975668 D MerR family transcriptional regulator 1974505..1975668 Clostridium difficile R20291 8468068 YP_003218177.1 CDS CDR20291_1683 NC_013316.1 1975757 1976137 R hypothetical protein complement(1975757..1976137) Clostridium difficile R20291 8468069 YP_003218178.1 CDS CDR20291_1684 NC_013316.1 1976140 1976808 R hypothetical protein complement(1976140..1976808) Clostridium difficile R20291 8468070 YP_003218179.1 CDS CDR20291_1685 NC_013316.1 1976905 1977894 R exonuclease complement(1976905..1977894) Clostridium difficile R20291 8468071 YP_003218180.1 CDS CDR20291_1686 NC_013316.1 1977919 1978266 R hypothetical protein complement(1977919..1978266) Clostridium difficile R20291 8468072 YP_003218181.1 CDS CDR20291_1687 NC_013316.1 1978484 1979440 R L-threonine dehydrogenase complement(1978484..1979440) Clostridium difficile R20291 8468073 YP_003218182.1 CDS CDR20291_1688 NC_013316.1 1979881 1980249 D hypothetical protein 1979881..1980249 Clostridium difficile R20291 8468074 YP_003218183.1 CDS CDR20291_1689 NC_013316.1 1980674 1980919 D hypothetical protein 1980674..1980919 Clostridium difficile R20291 8468075 YP_003218184.1 CDS CDR20291_1690 NC_013316.1 1981018 1981281 D hypothetical protein 1981018..1981281 Clostridium difficile R20291 8468076 YP_003218185.1 CDS CDR20291_1691 NC_013316.1 1981566 1982513 R nitrite and sulfite reductase subunit complement(1981566..1982513) Clostridium difficile R20291 8468077 YP_003218186.1 CDS CDR20291_1692 NC_013316.1 1982516 1984147 R pyridine nucleotide-disulfide oxidoreductase complement(1982516..1984147) Clostridium difficile R20291 8468078 YP_003218187.1 CDS CDR20291_1693 NC_013316.1 1984277 1985194 D LysR family transcriptional regulator 1984277..1985194 Clostridium difficile R20291 8468079 YP_003218188.1 CDS CDR20291_1694 NC_013316.1 1985251 1985832 R tellurium resistance protein complement(1985251..1985832) Clostridium difficile R20291 8468080 YP_003218189.1 CDS CDR20291_1695 NC_013316.1 1985872 1986438 R tellurium resistance protein complement(1985872..1986438) Clostridium difficile R20291 8468081 YP_003218190.1 CDS CDR20291_1696 NC_013316.1 1986893 1987753 R hypothetical protein complement(1986893..1987753) Clostridium difficile R20291 8468082 YP_003218191.1 CDS CDR20291_1697 NC_013316.1 1987902 1988792 D hydrolase 1987902..1988792 Clostridium difficile R20291 8468083 YP_003218192.1 CDS CDR20291_1698 NC_013316.1 1989019 1990764 D cell surface protein 1989019..1990764 Clostridium difficile R20291 8468084 YP_003218193.1 CDS scrR NC_013316.1 1991148 1992134 D sucrose operon repressor 1991148..1992134 Clostridium difficile R20291 8468085 YP_003218194.1 CDS sacA NC_013316.1 1992471 1993952 D sucrose-6-phosphate hydrolase 1992471..1993952 Clostridium difficile R20291 8470265 YP_003218195.1 CDS scrK NC_013316.1 1993978 1994949 D fructokinase 1993978..1994949 Clostridium difficile R20291 8470257 YP_003218196.1 CDS CDR20291_1702 NC_013316.1 1995205 1995807 R NADPH-dependent FMN reductase complement(1995205..1995807) Clostridium difficile R20291 8470264 YP_003218197.1 CDS CDR20291_1703 NC_013316.1 1996055 1997299 D pyridoxal-dependent decarboxylase 1996055..1997299 Clostridium difficile R20291 8468086 YP_003218198.1 CDS CDR20291_1704 NC_013316.1 1997598 1998569 D multi-drug resistance efflux pump; g196 1997598..1998569 Clostridium difficile R20291 8468087 YP_003218199.1 CDS CDR20291_1705 NC_013316.1 1998756 1999133 D regulatory protein 1998756..1999133 Clostridium difficile R20291 8468088 YP_003218200.1 CDS CDR20291_1706 NC_013316.1 1999664 2000323 D two-component sensor histidine kinase 1999664..2000323 Clostridium difficile R20291 8468089 YP_003218201.1 CDS CDR20291_1707 NC_013316.1 2000560 2000958 D two-component system response regulator 2000560..2000958 Clostridium difficile R20291 8468090 YP_003218202.1 CDS CDR20291_1708 NC_013316.1 2001025 2001522 D hypothetical protein 2001025..2001522 Clostridium difficile R20291 8468091 YP_003218203.1 CDS CDR20291_1709 NC_013316.1 2001724 2002365 D phosphoglycerate mutase 2001724..2002365 Clostridium difficile R20291 8468092 YP_003218204.1 CDS CDR20291_1710 NC_013316.1 2002389 2003642 D hypothetical protein 2002389..2003642 Clostridium difficile R20291 8468093 YP_003218205.1 CDS cmk NC_013316.1 2003688 2004338 D cytidylate kinase 2003688..2004338 Clostridium difficile R20291 8468094 YP_003218206.1 CDS CDR20291_1712 NC_013316.1 2004389 2004985 D acyltransferase 2004389..2004985 Clostridium difficile R20291 8469599 YP_003218207.1 CDS ispH NC_013316.1 2004998 2005837 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2004998..2005837 Clostridium difficile R20291 8468095 YP_003218208.1 CDS CDR20291_1714 NC_013316.1 2006151 2007236 D hypothetical protein 2006151..2007236 Clostridium difficile R20291 8469915 YP_003218209.1 CDS ade NC_013316.1 2007542 2009239 D adenine deaminase 2007542..2009239 Clostridium difficile R20291 8468096 YP_003218210.1 CDS bcp NC_013316.1 2009591 2010055 D thiol peroxidase 2009591..2010055 Clostridium difficile R20291 8469477 YP_003218211.1 CDS CDR20291_1717 NC_013316.1 2010065 2010808 D hypothetical protein 2010065..2010808 Clostridium difficile R20291 8469540 YP_003218212.1 CDS CDR20291_1718 NC_013316.1 2010936 2013593 D cations-transporting ATPase 2010936..2013593 Clostridium difficile R20291 8468097 YP_003218213.1 CDS cysD NC_013316.1 2013859 2015124 D O-acetylhomoserine sulfhydrylase 2013859..2015124 Clostridium difficile R20291 8468098 YP_003218214.1 CDS metA NC_013316.1 2015154 2016044 D homoserine O-succinyltransferase 2015154..2016044 Clostridium difficile R20291 8469636 YP_003218215.1 CDS CDR20291_1721 NC_013316.1 2016535 2016978 D MarR family transcriptional regulator 2016535..2016978 Clostridium difficile R20291 8469958 YP_003218216.1 CDS ftsH1 NC_013316.1 2017009 2018826 D cell division protein 2017009..2018826 Clostridium difficile R20291 8468099 YP_003218217.1 CDS kdpD NC_013316.1 2019004 2021706 D two-component sensor histidine kinase 2019004..2021706 Clostridium difficile R20291 8469777 YP_003218218.1 CDS kdpE NC_013316.1 2021740 2022438 D two-component response regulator 2021740..2022438 Clostridium difficile R20291 8469924 YP_003218219.1 CDS CDR20291_1725 NC_013316.1 2022777 2023733 D cation transport-related membrane protein 2022777..2023733 Clostridium difficile R20291 8469925 YP_003218220.1 CDS CDR20291_1726 NC_013316.1 2023910 2024065 D hypothetical protein 2023910..2024065 Clostridium difficile R20291 8468100 YP_003218221.1 CDS CDR20291_1727 NC_013316.1 2024195 2025208 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 2024195..2025208 Clostridium difficile R20291 8468101 YP_003218222.1 CDS aroB NC_013316.1 2025230 2026294 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 2025230..2026294 Clostridium difficile R20291 8468102 YP_003218223.1 CDS aroA NC_013316.1 2026294 2027607 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2026294..2027607 Clostridium difficile R20291 8469507 YP_003218224.1 CDS aroC NC_013316.1 2027582 2028664 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2027582..2028664 Clostridium difficile R20291 8469506 YP_003218225.1 CDS pheA NC_013316.1 2028667 2029863 D bifunctional chorismate mutase/prephenate dehydratase 2028667..2029863 Clostridium difficile R20291 8469508 YP_003218226.1 CDS aroE NC_013316.1 2029910 2030719 D shikimate dehydrogenase 2029910..2030719 Clostridium difficile R20291 8470075 YP_003218227.1 CDS aroK NC_013316.1 2030731 2031264 D shikimate kinase 2030731..2031264 Clostridium difficile R20291 8469510 YP_003218228.1 CDS tyrC NC_013316.1 2031285 2032124 D prephenate dehydrogenase 2031285..2032124 Clostridium difficile R20291 8469511 YP_003218229.1 CDS CDR20291_1735 NC_013316.1 2032377 2033873 D signaling protein 2032377..2033873 Clostridium difficile R20291 8470407 YP_003218230.1 CDS CDR20291_1736 NC_013316.1 2033906 2037343 D signaling protein 2033906..2037343 Clostridium difficile R20291 8468103 YP_003218231.1 CDS CDR20291_1737 NC_013316.1 2037361 2038107 D hypothetical protein 2037361..2038107 Clostridium difficile R20291 8468104 YP_003218232.1 CDS CDR20291_1738 NC_013316.1 2038056 2038364 R hypothetical protein complement(2038056..2038364) Clostridium difficile R20291 8468105 YP_003218233.1 CDS CDR20291_1741 NC_013316.1 2040727 2041008 D hypothetical protein 2040727..2041008 Clostridium difficile R20291 8468107 YP_003218234.1 CDS CDR20291_1742 NC_013316.1 2041094 2042116 D conjugative transposon protein 2041094..2042116 Clostridium difficile R20291 8468108 YP_003218236.1 CDS CDR20291_1744 NC_013316.1 2043677 2045557 D site-specific recombinase, resolvase family 2043677..2045557 Clostridium difficile R20291 8468109 YP_003218237.1 CDS CDR20291_1745 NC_013316.1 2045584 2045937 D hypothetical protein 2045584..2045937 Clostridium difficile R20291 8468110 YP_003218238.1 CDS CDR20291_1746 NC_013316.1 2045945 2046253 D hypothetical protein 2045945..2046253 Clostridium difficile R20291 8468111 YP_003218239.1 CDS CDR20291_1747 NC_013316.1 2046281 2046649 R hypothetical protein complement(2046281..2046649) Clostridium difficile R20291 8468112 YP_003218240.1 CDS CDR20291_1748 NC_013316.1 2046924 2047667 D two-component response regulator 2046924..2047667 Clostridium difficile R20291 8468113 YP_003218241.1 CDS CDR20291_1749 NC_013316.1 2047673 2048590 D sensor protein 2047673..2048590 Clostridium difficile R20291 8468114 YP_003218242.1 CDS CDR20291_1750 NC_013316.1 2048689 2049651 D lantibiotic ABC transporter ATP-binding protein 2048689..2049651 Clostridium difficile R20291 8468115 YP_003218243.1 CDS CDR20291_1751 NC_013316.1 2049644 2050429 D lantibiotic ABC transporter permease 2049644..2050429 Clostridium difficile R20291 8468116 YP_003218244.1 CDS CDR20291_1752 NC_013316.1 2050432 2051211 D lantibiotic ABC transporter permease 2050432..2051211 Clostridium difficile R20291 8468117 YP_003218245.1 CDS CDR20291_1753 NC_013316.1 2051219 2051680 D hypothetical protein 2051219..2051680 Clostridium difficile R20291 8468118 YP_003218246.1 CDS CDR20291_1754 NC_013316.1 2052125 2052538 D RNA polymerase, sigma-24 subunit, ecf subfamily (ecf subfamily RNA polymerase sigma-70 factor) 2052125..2052538 Clostridium difficile R20291 8468119 YP_003218247.1 CDS CDR20291_1755 NC_013316.1 2052640 2053092 D sigma-24 (feci) 2052640..2053092 Clostridium difficile R20291 8468120 YP_003218248.1 CDS CDR20291_1756 NC_013316.1 2053067 2053564 D RNA polymerase, sigma-24 subunit, ecf subfamily 2053067..2053564 Clostridium difficile R20291 8468121 YP_003218249.1 CDS CDR20291_1757 NC_013316.1 2053584 2053883 D hypothetical protein 2053584..2053883 Clostridium difficile R20291 8468122 YP_003218250.1 CDS CDR20291_1759 NC_013316.1 2055623 2055913 R addiction module toxin complement(2055623..2055913) Clostridium difficile R20291 8468124 YP_003218251.1 CDS CDR20291_1760 NC_013316.1 2055910 2056278 R addiction module antitoxin complement(2055910..2056278) Clostridium difficile R20291 8468125 YP_003218252.1 CDS CDR20291_1761 NC_013316.1 2056315 2056713 D hypothetical protein 2056315..2056713 Clostridium difficile R20291 8468126 YP_003218253.1 CDS CDR20291_1762 NC_013316.1 2056827 2057561 D phage protein 2056827..2057561 Clostridium difficile R20291 8468127 YP_003218254.1 CDS CDR20291_1763 NC_013316.1 2057726 2058421 D hypothetical protein 2057726..2058421 Clostridium difficile R20291 8468128 YP_003218255.1 CDS CDR20291_1764 NC_013316.1 2058698 2059102 D hypothetical protein 2058698..2059102 Clostridium difficile R20291 8468129 YP_003218256.1 CDS CDR20291_1765 NC_013316.1 2059876 2060253 D hypothetical protein 2059876..2060253 Clostridium difficile R20291 8468130 YP_003218257.1 CDS yobD NC_013316.1 2060670 2061518 R transcription regulator (yobd protein) complement(2060670..2061518) Clostridium difficile R20291 8468131 YP_003218258.1 CDS CDR20291_1767 NC_013316.1 2061695 2062177 D hypothetical protein 2061695..2062177 Clostridium difficile R20291 8470445 YP_003218259.1 CDS CDR20291_1768 NC_013316.1 2063137 2064138 D hypothetical protein 2063137..2064138 Clostridium difficile R20291 8468132 YP_003218260.1 CDS CDR20291_1769 NC_013316.1 2064280 2064840 D hypothetical protein 2064280..2064840 Clostridium difficile R20291 8468133 YP_003218261.1 CDS CDR20291_1770 NC_013316.1 2064800 2066158 D hypothetical protein 2064800..2066158 Clostridium difficile R20291 8468134 YP_003218262.1 CDS CDR20291_1771 NC_013316.1 2066666 2068318 D hypothetical protein 2066666..2068318 Clostridium difficile R20291 8468135 YP_003218263.1 CDS CDR20291_1772 NC_013316.1 2068845 2070518 R hypothetical protein complement(2068845..2070518) Clostridium difficile R20291 8468136 YP_003218264.1 CDS CDR20291_1773 NC_013316.1 2071454 2071891 R hypothetical protein complement(2071454..2071891) Clostridium difficile R20291 8468137 YP_003218265.1 CDS CDR20291_1774 NC_013316.1 2072365 2073348 R hypothetical protein complement(2072365..2073348) Clostridium difficile R20291 8468138 YP_003218266.1 CDS CDR20291_1775 NC_013316.1 2074593 2075183 R hypothetical protein complement(2074593..2075183) Clostridium difficile R20291 8468139 YP_003218267.1 CDS CDR20291_1776 NC_013316.1 2076020 2076331 D conjugal transfer protein 2076020..2076331 Clostridium difficile R20291 8468140 YP_003218268.1 CDS CDR20291_1777 NC_013316.1 2076881 2077258 D hypothetical protein 2076881..2077258 Clostridium difficile R20291 8468141 YP_003218269.1 CDS CDR20291_1778 NC_013316.1 2077375 2077809 D hypothetical protein 2077375..2077809 Clostridium difficile R20291 8468142 YP_003218270.1 CDS CDR20291_1779 NC_013316.1 2077802 2079103 D hypothetical protein 2077802..2079103 Clostridium difficile R20291 8468143 YP_003218271.1 CDS CDR20291_1780 NC_013316.1 2079197 2080003 R hypothetical protein complement(2079197..2080003) Clostridium difficile R20291 8468144 YP_003218272.1 CDS CDR20291_1781 NC_013316.1 2080672 2081013 D hypothetical protein 2080672..2081013 Clostridium difficile R20291 8468145 YP_003218273.1 CDS CDR20291_1782 NC_013316.1 2081006 2081302 D hypothetical protein 2081006..2081302 Clostridium difficile R20291 8468146 YP_003218274.1 CDS CDR20291_1783 NC_013316.1 2081768 2081929 R hypothetical protein complement(2081768..2081929) Clostridium difficile R20291 8468147 YP_003218275.1 CDS CDR20291_1784 NC_013316.1 2082284 2083513 D hypothetical protein 2082284..2083513 Clostridium difficile R20291 8468148 YP_003218276.1 CDS CDR20291_1786 NC_013316.1 2084201 2085529 D hypothetical protein 2084201..2085529 Clostridium difficile R20291 8468150 YP_003218277.1 CDS CDR20291_1787 NC_013316.1 2085558 2085797 R hypothetical protein complement(2085558..2085797) Clostridium difficile R20291 8468151 YP_003218278.1 CDS CDR20291_1788 NC_013316.1 2085969 2087639 D hypothetical protein 2085969..2087639 Clostridium difficile R20291 8468152 YP_003218279.1 CDS CDR20291_1789 NC_013316.1 2087833 2088696 D conjugative transposon membrane protein 2087833..2088696 Clostridium difficile R20291 8468153 YP_003218280.1 CDS CDR20291_1790 NC_013316.1 2089315 2091708 D conjugal transfer protein 2089315..2091708 Clostridium difficile R20291 8468154 YP_003218281.1 CDS CDR20291_1791 NC_013316.1 2091712 2093844 D hypothetical protein 2091712..2093844 Clostridium difficile R20291 8468155 YP_003218282.1 CDS CDR20291_1792 NC_013316.1 2094070 2095611 D cell surface protein 2094070..2095611 Clostridium difficile R20291 8468156 YP_003218283.1 CDS CDR20291_1793 NC_013316.1 2095706 2097412 D DNA topoisomerase 2095706..2097412 Clostridium difficile R20291 8468157 YP_003218284.1 CDS CDR20291_1794 NC_013316.1 2097497 2098300 D hypothetical protein 2097497..2098300 Clostridium difficile R20291 8468158 YP_003218285.1 CDS CDR20291_1795 NC_013316.1 2098383 2107112 D helicase 2098383..2107112 Clostridium difficile R20291 8468159 YP_003218286.1 CDS CDR20291_1796 NC_013316.1 2107137 2107814 D hypothetical protein 2107137..2107814 Clostridium difficile R20291 8468160 YP_003218287.1 CDS CDR20291_1797 NC_013316.1 2108387 2110009 D conjugative transposon DNA recombination protein 2108387..2110009 Clostridium difficile R20291 8468161 YP_003218288.1 CDS CDR20291_1798 NC_013316.1 2110006 2111073 D conjugative transposon protein 2110006..2111073 Clostridium difficile R20291 8468162 YP_003218289.1 CDS CDR20291_1799 NC_013316.1 2111552 2112358 D hypothetical protein 2111552..2112358 Clostridium difficile R20291 8468163 YP_003218290.1 CDS CDR20291_1800 NC_013316.1 2112394 2113725 R conjugative transposon mobilization protein complement(2112394..2113725) Clostridium difficile R20291 8468164 YP_003218291.1 CDS CDR20291_1801 NC_013316.1 2114415 2115572 D hypothetical protein 2114415..2115572 Clostridium difficile R20291 8468165 YP_003218292.1 CDS CDR20291_1802 NC_013316.1 2115733 2116629 D iron-sulfur-binding membrane protein 2115733..2116629 Clostridium difficile R20291 8468166 YP_003218293.1 CDS CDR20291_1803 NC_013316.1 2116648 2117925 D ABC transporter permease 2116648..2117925 Clostridium difficile R20291 8468167 YP_003218294.1 CDS CDR20291_1804 NC_013316.1 2117935 2118591 D ABC transporter ATP-binding protein 2117935..2118591 Clostridium difficile R20291 8468168 YP_003218295.1 CDS CDR20291_1805 NC_013316.1 2118591 2119967 D ABC transporter permease 2118591..2119967 Clostridium difficile R20291 8468169 YP_003218296.1 CDS vncR NC_013316.1 2120065 2120718 D two-component system, response regulator 2120065..2120718 Clostridium difficile R20291 8468170 YP_003218297.1 CDS vncS NC_013316.1 2120715 2122034 D sensor protein 2120715..2122034 Clostridium difficile R20291 8470429 YP_003218298.1 CDS CDR20291_1808 NC_013316.1 2122558 2122968 D sigma factor 2122558..2122968 Clostridium difficile R20291 8470430 YP_003218299.1 CDS CDR20291_1810 NC_013316.1 2129089 2129436 D hypothetical protein 2129089..2129436 Clostridium difficile R20291 8468172 YP_003218300.1 CDS CDR20291_1811 NC_013316.1 2129586 2130635 R hypothetical protein complement(2129586..2130635) Clostridium difficile R20291 8468173 YP_003218301.1 CDS CDR20291_1812 NC_013316.1 2131021 2131755 D hypothetical protein 2131021..2131755 Clostridium difficile R20291 8468174 YP_003218302.1 CDS CDR20291_1813 NC_013316.1 2131897 2132388 R regulatory protein complement(2131897..2132388) Clostridium difficile R20291 8468175 YP_003218303.1 CDS CDR20291_1814 NC_013316.1 2132737 2133120 D plasmid-related protein 2132737..2133120 Clostridium difficile R20291 8468176 YP_003218304.1 CDS CDR20291_1815 NC_013316.1 2133626 2134009 D hypothetical protein 2133626..2134009 Clostridium difficile R20291 8468177 YP_003218305.1 CDS CDR20291_1816 NC_013316.1 2133993 2134361 D lipoprotein 2133993..2134361 Clostridium difficile R20291 8468178 YP_003218306.1 CDS CDR20291_1817 NC_013316.1 2134455 2134913 R hypothetical protein complement(2134455..2134913) Clostridium difficile R20291 8468179 YP_003218307.1 CDS CDR20291_1818 NC_013316.1 2134958 2135746 R phage-related cell wall hydrolase (endolysin) complement(2134958..2135746) Clostridium difficile R20291 8468180 YP_003218308.1 CDS CDR20291_1819 NC_013316.1 2135885 2136337 R phage-related deoxycytidylate deaminase ( late competence protein) complement(2135885..2136337) Clostridium difficile R20291 8468181 YP_003218309.1 CDS CDR20291_1820 NC_013316.1 2136556 2136765 R hypothetical protein complement(2136556..2136765) Clostridium difficile R20291 8468182 YP_003218310.1 CDS CDR20291_1821 NC_013316.1 2137144 2137653 D phage repressor 2137144..2137653 Clostridium difficile R20291 8468183 YP_003218311.1 CDS CDR20291_1823 NC_013316.1 2138057 2138263 D lipoprotein signal peptidase 2138057..2138263 Clostridium difficile R20291 8468185 YP_003218312.1 CDS CDR20291_1824 NC_013316.1 2138564 2139364 R ABC transporter permease complement(2138564..2139364) Clostridium difficile R20291 8468186 YP_003218313.1 CDS CDR20291_1826 NC_013316.1 2139559 2141157 R site-specific recombinases complement(2139559..2141157) Clostridium difficile R20291 8468187 YP_003218314.1 CDS CDR20291_1827 NC_013316.1 2141479 2141661 D hypothetical protein 2141479..2141661 Clostridium difficile R20291 8468188 YP_003218315.1 CDS pduQ NC_013316.1 2141835 2142965 D ethanolamine/propanediol utilization propanol dehydrogenase 2141835..2142965 Clostridium difficile R20291 8468189 YP_003218316.1 CDS pduU NC_013316.1 2143206 2143556 D ethanolamine/propanediol utilization protein 2143206..2143556 Clostridium difficile R20291 8470057 YP_003218317.1 CDS pduV NC_013316.1 2143564 2144013 D ethanolamine/propanediol utilization protein 2143564..2144013 Clostridium difficile R20291 8470058 YP_003218318.1 CDS CDR20291_1831 NC_013316.1 2144115 2144690 D two-component response regulator 2144115..2144690 Clostridium difficile R20291 8470059 YP_003218319.1 CDS CDR20291_1832 NC_013316.1 2144683 2146092 D two-component sensor histidine kinase 2144683..2146092 Clostridium difficile R20291 8468190 YP_003218320.1 CDS eutA NC_013316.1 2146276 2147709 D ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 2146276..2147709 Clostridium difficile R20291 8468191 YP_003218321.1 CDS eutB NC_013316.1 2147727 2149091 D ethanolamine/propanediol ammonia-lyase heavy chain 2147727..2149091 Clostridium difficile R20291 8469699 YP_003218322.1 CDS eutC NC_013316.1 2149104 2149985 D catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 2149104..2149985 Clostridium difficile R20291 8469700 YP_003218323.1 CDS eutL NC_013316.1 2150005 2150658 D ethanolamine/propanediol utilization protein 2150005..2150658 Clostridium difficile R20291 8469701 YP_003218324.1 CDS CDR20291_1837 NC_013316.1 2150669 2151370 D ethanolamine/propanediol utilisation protein 2150669..2151370 Clostridium difficile R20291 8469703 YP_003218325.1 CDS CDR20291_1838 NC_013316.1 2151373 2152842 D ethanolamine/propanediol utilisation aldehyde-alcohol dehydrogenase 2151373..2152842 Clostridium difficile R20291 8468192 YP_003218326.1 CDS eutM NC_013316.1 2152938 2153225 D ethanolamine/propanediol utilization protein 2152938..2153225 Clostridium difficile R20291 8468193 YP_003218327.1 CDS eutT NC_013316.1 2153352 2154113 D ethanolamine/propanediol utilization cobalamin adenosyltransferase 2153352..2154113 Clostridium difficile R20291 8469704 YP_003218328.1 CDS CDR20291_1841 NC_013316.1 2154126 2154755 D propanediol/ethanolamine utilization protein 2154126..2154755 Clostridium difficile R20291 8469707 YP_003218329.1 CDS CDR20291_1842 NC_013316.1 2154797 2155522 D ethanolamine utilization protein 2154797..2155522 Clostridium difficile R20291 8468194 YP_003218330.1 CDS eutN NC_013316.1 2155535 2155807 D ethanolamine/propanediol utilization protein 2155535..2155807 Clostridium difficile R20291 8468195 YP_003218331.1 CDS CDR20291_1844 NC_013316.1 2155800 2156351 D ethanolamine/propanediol utilization protein 2155800..2156351 Clostridium difficile R20291 8469705 YP_003218332.1 CDS eutH NC_013316.1 2156351 2157454 D ethanolamine/propanediol transporter 2156351..2157454 Clostridium difficile R20291 8468196 YP_003218333.1 CDS eutQ NC_013316.1 2157456 2157929 D ethanolamine/propanediol utilization protein 2157456..2157929 Clostridium difficile R20291 8469702 YP_003218334.1 CDS CDR20291_1847 NC_013316.1 2158409 2158966 D transcriptional regulator 2158409..2158966 Clostridium difficile R20291 8469706 YP_003218335.1 CDS CDR20291_1848 NC_013316.1 2159345 2160520 D peptidase 2159345..2160520 Clostridium difficile R20291 8468197 YP_003218336.1 CDS CDR20291_1849 NC_013316.1 2160540 2162093 D aminobenzoyl-glutamate transport protein 2160540..2162093 Clostridium difficile R20291 8468198 YP_003218337.1 CDS CDR20291_1850 NC_013316.1 2162125 2163327 D aminotransferase 2162125..2163327 Clostridium difficile R20291 8468199 YP_003218338.1 CDS CDR20291_1851 NC_013316.1 2164274 2165632 D hypothetical protein 2164274..2165632 Clostridium difficile R20291 8468200 YP_003218339.1 CDS CDR20291_1852 NC_013316.1 2165625 2166257 D hypothetical protein 2165625..2166257 Clostridium difficile R20291 8468201 YP_003218340.1 CDS CDR20291_1853 NC_013316.1 2166586 2167743 D hypothetical protein 2166586..2167743 Clostridium difficile R20291 8468202 YP_003218341.1 CDS dinR NC_013316.1 2167891 2168571 R SOS regulatory protein complement(2167891..2168571) Clostridium difficile R20291 8468203 YP_003218342.1 CDS CDR20291_1855 NC_013316.1 2168630 2169757 R tyrosine recombinase complement(2168630..2169757) Clostridium difficile R20291 8469664 YP_003218343.1 CDS CDR20291_1856 NC_013316.1 2170079 2170924 R hypothetical protein complement(2170079..2170924) Clostridium difficile R20291 8468204 YP_003218344.1 CDS CDR20291_1857 NC_013316.1 2170954 2171325 R hypothetical protein complement(2170954..2171325) Clostridium difficile R20291 8468205 YP_003218345.1 CDS spoVS NC_013316.1 2171478 2171738 R stage V sporulation protein S complement(2171478..2171738) Clostridium difficile R20291 8468206 YP_003218346.1 CDS accA NC_013316.1 2171927 2172871 R acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha complement(2171927..2172871) Clostridium difficile R20291 8470333 YP_003218347.1 CDS accD NC_013316.1 2172892 2173746 R acetyl-coenzyme A carboxylase carboxyl transferase subunit beta complement(2172892..2173746) Clostridium difficile R20291 8469457 YP_003218348.1 CDS accC NC_013316.1 2173761 2175122 R biotin carboxylase acetyl-CoA carboxylase subunit A complement(2173761..2175122) Clostridium difficile R20291 8469460 YP_003218349.1 CDS accB NC_013316.1 2175138 2175590 R biotin carboxyl carrier protein of acetyl-CoA carboxylase complement(2175138..2175590) Clostridium difficile R20291 8469459 YP_003218350.1 CDS CDR20291_1863 NC_013316.1 2175860 2176306 R hypothetical protein complement(2175860..2176306) Clostridium difficile R20291 8469458 YP_003218351.1 CDS CDR20291_1864 NC_013316.1 2176988 2177734 R hypothetical protein complement(2176988..2177734) Clostridium difficile R20291 8468207 YP_003218352.1 CDS CDR20291_1865 NC_013316.1 2177863 2178546 R tRNA guanine-N(7)-methyltransferase complement(2177863..2178546) Clostridium difficile R20291 8468208 YP_003218353.1 CDS CDR20291_1866 NC_013316.1 2178645 2178965 R hypothetical protein complement(2178645..2178965) Clostridium difficile R20291 8468209 YP_003218354.1 CDS CDR20291_1867 NC_013316.1 2179418 2179843 R hypothetical protein complement(2179418..2179843) Clostridium difficile R20291 8468210 YP_003218355.1 CDS CDR20291_1868 NC_013316.1 2179996 2180457 R glyoxalase complement(2179996..2180457) Clostridium difficile R20291 8468211 YP_003218356.1 CDS CDR20291_1869 NC_013316.1 2180495 2181328 R AraC family transcriptional regulator complement(2180495..2181328) Clostridium difficile R20291 8468212 YP_003218357.1 CDS CDR20291_1870 NC_013316.1 2181601 2182299 R ABC transporter ATP-binding protein complement(2181601..2182299) Clostridium difficile R20291 8468213 YP_003218358.1 CDS CDR20291_1871 NC_013316.1 2182302 2184779 R ABC transporter permease complement(2182302..2184779) Clostridium difficile R20291 8468214 YP_003218359.1 CDS CDR20291_1872 NC_013316.1 2184999 2186402 R two-component sensor histidine kinase complement(2184999..2186402) Clostridium difficile R20291 8468215 YP_003218360.1 CDS CDR20291_1873 NC_013316.1 2186901 2187761 D hypothetical protein 2186901..2187761 Clostridium difficile R20291 8468216 YP_003218361.1 CDS CDR20291_1874 NC_013316.1 2188001 2188600 R acetyltransferase complement(2188001..2188600) Clostridium difficile R20291 8468217 YP_003218362.1 CDS CDR20291_1875 NC_013316.1 2188748 2189635 R LysR family transcriptional regulator complement(2188748..2189635) Clostridium difficile R20291 8468218 YP_003218363.1 CDS CDR20291_1876 NC_013316.1 2189754 2190953 D hypothetical protein 2189754..2190953 Clostridium difficile R20291 8468219 YP_003218364.1 CDS CDR20291_1877 NC_013316.1 2191147 2193699 R ABC transporter permease complement(2191147..2193699) Clostridium difficile R20291 8468220 YP_003218365.1 CDS CDR20291_1878 NC_013316.1 2193699 2194385 R ABC transporter ATP-binding protein complement(2193699..2194385) Clostridium difficile R20291 8468221 YP_003218366.1 CDS CDR20291_1879 NC_013316.1 2194462 2195370 R two-component sensor histidine kinase complement(2194462..2195370) Clostridium difficile R20291 8468222 YP_003218367.1 CDS CDR20291_1880 NC_013316.1 2195372 2196043 R two-component response regulator complement(2195372..2196043) Clostridium difficile R20291 8468223 YP_003218368.1 CDS CDR20291_1881 NC_013316.1 2196332 2197369 D reductive dehalogenase 2196332..2197369 Clostridium difficile R20291 8468224 YP_003218369.1 CDS CDR20291_1882 NC_013316.1 2197527 2198213 D two-component system response regulator 2197527..2198213 Clostridium difficile R20291 8468225 YP_003218370.1 CDS CDR20291_1883 NC_013316.1 2198194 2199234 D two-component sensor histidine kinase 2198194..2199234 Clostridium difficile R20291 8468226 YP_003218371.1 CDS CDR20291_1884 NC_013316.1 2199316 2199981 D ABC transporter ATP-binding protein 2199316..2199981 Clostridium difficile R20291 8468227 YP_003218372.1 CDS CDR20291_1885 NC_013316.1 2199994 2202411 D ABC transporter permease 2199994..2202411 Clostridium difficile R20291 8468228 YP_003218373.1 CDS CDR20291_1886 NC_013316.1 2202592 2203383 R hypothetical protein complement(2202592..2203383) Clostridium difficile R20291 8468229 YP_003218374.1 CDS CDR20291_1887 NC_013316.1 2203416 2204003 R hypothetical protein complement(2203416..2204003) Clostridium difficile R20291 8468230 YP_003218375.1 CDS CDR20291_1888 NC_013316.1 2204180 2205571 R hypothetical protein complement(2204180..2205571) Clostridium difficile R20291 8468231 YP_003218376.1 CDS CDR20291_1889 NC_013316.1 2205761 2207059 R acyl-CoA thioesterase complement(2205761..2207059) Clostridium difficile R20291 8468232 YP_003218377.1 CDS CDR20291_1890 NC_013316.1 2207420 2208295 R hypothetical protein complement(2207420..2208295) Clostridium difficile R20291 8468233 YP_003218378.1 CDS CDR20291_1891 NC_013316.1 2208488 2209174 R hypothetical protein complement(2208488..2209174) Clostridium difficile R20291 8468234 YP_003218379.1 CDS CDR20291_1892 NC_013316.1 2209223 2209756 R regulatory protein complement(2209223..2209756) Clostridium difficile R20291 8468235 YP_003218380.1 CDS CDR20291_1893 NC_013316.1 2209800 2210432 R cyclase complement(2209800..2210432) Clostridium difficile R20291 8468236 YP_003218381.1 CDS CDR20291_1894 NC_013316.1 2210522 2211661 R hypothetical protein complement(2210522..2211661) Clostridium difficile R20291 8468237 YP_003218382.1 CDS CDR20291_1895 NC_013316.1 2211734 2213080 R hypothetical protein complement(2211734..2213080) Clostridium difficile R20291 8468238 YP_003218383.1 CDS CDR20291_1896 NC_013316.1 2213149 2214429 R hypothetical protein complement(2213149..2214429) Clostridium difficile R20291 8468239 YP_003218384.1 CDS hfQ NC_013316.1 2214556 2214816 R RNA-binding protein (host factor-I protein); HfQ protein complement(2214556..2214816) Clostridium difficile R20291 8468240 YP_003218385.1 CDS miaA NC_013316.1 2214930 2215880 R tRNA delta(2)-isopentenylpyrophosphate transferase complement(2214930..2215880) Clostridium difficile R20291 8469866 YP_003218386.1 CDS mutL NC_013316.1 2215903 2217870 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(2215903..2217870) Clostridium difficile R20291 8469966 YP_003218387.1 CDS mutS NC_013316.1 2217881 2220724 R DNA mismatch repair protein complement(2217881..2220724) Clostridium difficile R20291 8470002 YP_003218388.1 CDS CDR20291_1901 NC_013316.1 2220887 2221609 R ABC transporter ATP-binding protein complement(2220887..2221609) Clostridium difficile R20291 8470003 YP_003218389.1 CDS CDR20291_1902 NC_013316.1 2221590 2222603 R ABC transporter substrate-binding protein complement(2221590..2222603) Clostridium difficile R20291 8468241 YP_003218390.1 CDS CDR20291_1903 NC_013316.1 2222625 2223395 R ABC transporter permease complement(2222625..2223395) Clostridium difficile R20291 8468242 YP_003218391.1 CDS CDR20291_1904 NC_013316.1 2223370 2223660 R hypothetical protein complement(2223370..2223660) Clostridium difficile R20291 8468243 YP_003218392.1 CDS CDR20291_1905 NC_013316.1 2224943 2225299 R transcriptional regulator complement(2224943..2225299) Clostridium difficile R20291 8468244 YP_003218393.1 CDS CDR20291_1906 NC_013316.1 2226030 2227148 D transposase-like protein b 2226030..2227148 Clostridium difficile R20291 8468245 YP_003218394.1 CDS CDR20291_1907 NC_013316.1 2227602 2228357 D hypothetical protein 2227602..2228357 Clostridium difficile R20291 8468246 YP_003218395.1 CDS CDR20291_1908 NC_013316.1 2228582 2229193 D NUDIX family protein 2228582..2229193 Clostridium difficile R20291 8468247 YP_003218396.1 CDS CDR20291_1909 NC_013316.1 2229491 2229829 D hypothetical protein 2229491..2229829 Clostridium difficile R20291 8468248 YP_003218397.1 CDS CDR20291_1910 NC_013316.1 2230236 2231525 R radical SAM protein complement(2230236..2231525) Clostridium difficile R20291 8468249 YP_003218398.1 CDS CDR20291_1911 NC_013316.1 2231920 2233356 R cell surface protein complement(2231920..2233356) Clostridium difficile R20291 8468250 YP_003218399.1 CDS trpP NC_013316.1 2234183 2234734 R tryptophan transport protein complement(2234183..2234734) Clostridium difficile R20291 8468251 YP_003218400.1 CDS CDR20291_1913 NC_013316.1 2235714 2235983 R hypothetical protein complement(2235714..2235983) Clostridium difficile R20291 8470396 YP_003218401.1 CDS CDR20291_1914 NC_013316.1 2236339 2236824 R hypothetical protein complement(2236339..2236824) Clostridium difficile R20291 8468252 YP_003218402.1 CDS cspC NC_013316.1 2238520 2238720 D cold shock protein 2238520..2238720 Clostridium difficile R20291 8468253 YP_003218403.1 CDS CDR20291_1916 NC_013316.1 2239658 2240503 D lipoprotein 2239658..2240503 Clostridium difficile R20291 8469624 YP_003218404.1 CDS CDR20291_1917 NC_013316.1 2240727 2240891 R hypothetical protein complement(2240727..2240891) Clostridium difficile R20291 8468254 YP_003218405.1 CDS CDR20291_1918 NC_013316.1 2241433 2241765 R decarboxylase complement(2241433..2241765) Clostridium difficile R20291 8468255 YP_003218406.1 CDS CDR20291_1919 NC_013316.1 2242009 2242650 R hypothetical protein complement(2242009..2242650) Clostridium difficile R20291 8468256 YP_003218407.1 CDS CDR20291_1920 NC_013316.1 2242631 2242930 R ArsR family transcriptional regulator complement(2242631..2242930) Clostridium difficile R20291 8468257 YP_003218408.1 CDS CDR20291_1921 NC_013316.1 2243893 2244561 R hypothetical protein complement(2243893..2244561) Clostridium difficile R20291 8468258 YP_003218409.1 CDS CDR20291_1922 NC_013316.1 2244705 2246360 R AraC family transcriptional regulator complement(2244705..2246360) Clostridium difficile R20291 8468259 YP_003218410.1 CDS CDR20291_1923 NC_013316.1 2246589 2246957 R MerR family transcriptional regulator complement(2246589..2246957) Clostridium difficile R20291 8468260 YP_003218411.1 CDS CDR20291_1924 NC_013316.1 2247106 2247900 D hypothetical protein 2247106..2247900 Clostridium difficile R20291 8468261 YP_003218412.1 CDS fldX NC_013316.1 2248053 2248481 R flavodoxin complement(2248053..2248481) Clostridium difficile R20291 8468262 YP_003218413.1 CDS ispD NC_013316.1 2248957 2249898 R major intracellular serine protease complement(2248957..2249898) Clostridium difficile R20291 8469736 YP_003218414.1 CDS ilvD NC_013316.1 2250239 2251894 R dihydroxy-acid dehydratase complement(2250239..2251894) Clostridium difficile R20291 8469912 YP_003218415.1 CDS CDR20291_1928 NC_013316.1 2252777 2253457 D hypothetical protein 2252777..2253457 Clostridium difficile R20291 8469900 YP_003218416.1 CDS CDR20291_1929 NC_013316.1 2253567 2253824 R hypothetical protein complement(2253567..2253824) Clostridium difficile R20291 8468263 YP_003218417.1 CDS CDR20291_1930 NC_013316.1 2254373 2254744 D phage regulatory protein 2254373..2254744 Clostridium difficile R20291 8468264 YP_003218418.1 CDS CDR20291_1931 NC_013316.1 2255546 2256442 R AraC family transcriptional regulator complement(2255546..2256442) Clostridium difficile R20291 8468265 YP_003218419.1 CDS CDR20291_1932 NC_013316.1 2256584 2258011 D transporter 2256584..2258011 Clostridium difficile R20291 8468266 YP_003218420.1 CDS clpB NC_013316.1 2258208 2260802 R chaperone complement(2258208..2260802) Clostridium difficile R20291 8468267 YP_003218421.1 CDS CDR20291_1934 NC_013316.1 2260839 2261435 R hypothetical protein complement(2260839..2261435) Clostridium difficile R20291 8469591 YP_003218422.1 CDS CDR20291_1935 NC_013316.1 2261452 2261856 R hypothetical protein complement(2261452..2261856) Clostridium difficile R20291 8468268 YP_003218423.1 CDS CDR20291_1936 NC_013316.1 2262222 2262596 D GntR family transcriptional regulator 2262222..2262596 Clostridium difficile R20291 8468269 YP_003218424.1 CDS CDR20291_1937 NC_013316.1 2262593 2263456 D ABC transporter ATP-binding protein 2262593..2263456 Clostridium difficile R20291 8468270 YP_003218425.1 CDS CDR20291_1938 NC_013316.1 2263456 2264094 D ABC transporter permease 2263456..2264094 Clostridium difficile R20291 8468271 YP_003218426.1 CDS CDR20291_1939 NC_013316.1 2264588 2265001 D acetyltransferase 2264588..2265001 Clostridium difficile R20291 8468272 YP_003218427.1 CDS CDR20291_1940 NC_013316.1 2265192 2266409 D N-carbamoyl-L-amino acid hydrolase 2265192..2266409 Clostridium difficile R20291 8468273 YP_003218428.1 CDS racX NC_013316.1 2266571 2267269 D amino acid racemase 2266571..2267269 Clostridium difficile R20291 8468274 YP_003218429.1 CDS CDR20291_1942 NC_013316.1 2267489 2268106 R lipoprotein complement(2267489..2268106) Clostridium difficile R20291 8470148 YP_003218430.1 CDS argF NC_013316.1 2268233 2269255 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(2268233..2269255) Clostridium difficile R20291 8468275 YP_003218431.1 CDS argM NC_013316.1 2269364 2270551 R succinylornithine transaminase complement(2269364..2270551) Clostridium difficile R20291 8469500 YP_003218432.1 CDS argB NC_013316.1 2270581 2271441 R acetylglutamate kinase complement(2270581..2271441) Clostridium difficile R20291 8469504 YP_003218433.1 CDS argJ NC_013316.1 2271456 2272673 R bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase complement(2271456..2272673) Clostridium difficile R20291 8469497 YP_003218434.1 CDS argC NC_013316.1 2272715 2273749 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(2272715..2273749) Clostridium difficile R20291 8469503 YP_003218435.1 CDS CDR20291_1948 NC_013316.1 2274439 2275203 R hypothetical protein complement(2274439..2275203) Clostridium difficile R20291 8469498 YP_003218436.1 CDS CDR20291_1949 NC_013316.1 2275506 2275979 D hypothetical protein 2275506..2275979 Clostridium difficile R20291 8468276 YP_003218437.1 CDS CDR20291_1950 NC_013316.1 2276348 2276905 R transcriptional regulator complement(2276348..2276905) Clostridium difficile R20291 8468277 YP_003218438.1 CDS CDR20291_1951 NC_013316.1 2277163 2277861 D hydrolase 2277163..2277861 Clostridium difficile R20291 8468278 YP_003218439.1 CDS CDR20291_1952 NC_013316.1 2278883 2279350 D hypothetical protein 2278883..2279350 Clostridium difficile R20291 8468279 YP_003218440.1 CDS CDR20291_1953 NC_013316.1 2279361 2279576 D transcriptional regulator 2279361..2279576 Clostridium difficile R20291 8468280 YP_003218441.1 CDS CDR20291_1954 NC_013316.1 2280346 2280639 R hypothetical protein complement(2280346..2280639) Clostridium difficile R20291 8468281 YP_003218442.1 CDS CDR20291_1955 NC_013316.1 2282255 2283127 R RpiR family transcriptional regulator complement(2282255..2283127) Clostridium difficile R20291 8468282 YP_003218443.1 CDS CDR20291_1956 NC_013316.1 2283521 2284099 R hypothetical protein complement(2283521..2284099) Clostridium difficile R20291 8468283 YP_003218444.1 CDS rluB NC_013316.1 2284157 2284873 R 23S RNA and tRNA pseudouridine synthase complement(2284157..2284873) Clostridium difficile R20291 8468284 YP_003218445.1 CDS CDR20291_1958 NC_013316.1 2285064 2286149 D hypothetical protein 2285064..2286149 Clostridium difficile R20291 8470177 YP_003218446.1 CDS CDR20291_1959 NC_013316.1 2286304 2286981 R lipoprotein complement(2286304..2286981) Clostridium difficile R20291 8468285 YP_003218447.1 CDS lysA NC_013316.1 2287180 2288472 R diaminopimelate decarboxylase complement(2287180..2288472) Clostridium difficile R20291 8468286 YP_003218448.1 CDS lysC NC_013316.1 2288490 2289683 R aspartokinase complement(2288490..2289683) Clostridium difficile R20291 8469944 YP_003218449.1 CDS CDR20291_1962 NC_013316.1 2290044 2290661 R hypothetical protein complement(2290044..2290661) Clostridium difficile R20291 8469945 YP_003218450.1 CDS CDR20291_1963 NC_013316.1 2290831 2292531 R hypothetical protein complement(2290831..2292531) Clostridium difficile R20291 8468287 YP_003218451.1 CDS CDR20291_1964 NC_013316.1 2292928 2293494 R hypothetical protein complement(2292928..2293494) Clostridium difficile R20291 8468288 YP_003218452.1 CDS CDR20291_1965 NC_013316.1 2293650 2294363 R hypothetical protein complement(2293650..2294363) Clostridium difficile R20291 8468289 YP_003218453.1 CDS glnS NC_013316.1 2294655 2296319 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2294655..2296319 Clostridium difficile R20291 8468290 YP_003218454.1 CDS CDR20291_1967 NC_013316.1 2296426 2297325 R similar to YegS from E. coli; lipid kinase complement(2296426..2297325) Clostridium difficile R20291 8469814 YP_003218455.1 CDS CDR20291_1968 NC_013316.1 2297352 2297990 R hypothetical protein complement(2297352..2297990) Clostridium difficile R20291 8468291 YP_003218456.1 CDS CDR20291_1969 NC_013316.1 2298326 2299324 R hypothetical protein complement(2298326..2299324) Clostridium difficile R20291 8468292 YP_003218457.1 CDS CDR20291_1970 NC_013316.1 2299422 2299997 R hypothetical protein complement(2299422..2299997) Clostridium difficile R20291 8468293 YP_003218458.1 CDS CDR20291_1971 NC_013316.1 2300304 2300576 D hypothetical protein 2300304..2300576 Clostridium difficile R20291 8468294 YP_003218459.1 CDS CDR20291_1972 NC_013316.1 2301005 2301382 R regulatory protein complement(2301005..2301382) Clostridium difficile R20291 8468295 YP_003218460.1 CDS CDR20291_1973 NC_013316.1 2301693 2302835 D integrase 2301693..2302835 Clostridium difficile R20291 8468296 YP_003218461.1 CDS CDR20291_1974 NC_013316.1 2303043 2303519 R hypothetical protein complement(2303043..2303519) Clostridium difficile R20291 8468297 YP_003218462.1 CDS CDR20291_1975 NC_013316.1 2303718 2305343 R ABC transporter ATP-binding protein complement(2303718..2305343) Clostridium difficile R20291 8468298 YP_003218463.1 CDS CDR20291_1976 NC_013316.1 2305681 2306700 R molybdopterin biosynthesis protein complement(2305681..2306700) Clostridium difficile R20291 8468299 YP_003218464.1 CDS CDR20291_1977 NC_013316.1 2306697 2307275 R molybdopterin-guanine dinucleotide biosynthesis protein complement(2306697..2307275) Clostridium difficile R20291 8468300 YP_003218465.1 CDS CDR20291_1978 NC_013316.1 2307373 2308095 R hypothetical protein complement(2307373..2308095) Clostridium difficile R20291 8468301 YP_003218466.1 CDS CDR20291_1979 NC_013316.1 2308278 2309591 R transposase complement(2308278..2309591) Clostridium difficile R20291 8468302 YP_003218467.1 CDS xdhA1 NC_013316.1 2309694 2312000 R xanthine dehydrogenase, molybdenum binding subunit complement(2309694..2312000) Clostridium difficile R20291 8468303 YP_003218468.1 CDS pucC1 NC_013316.1 2311993 2312802 R FAD-binding subunit of xanthine dehydrogenase complement(2311993..2312802) Clostridium difficile R20291 8470432 YP_003218469.1 CDS pbuX NC_013316.1 2312893 2314251 R xanthine permease complement(2312893..2314251) Clostridium difficile R20291 8470120 YP_003218470.1 CDS CDR20291_1983 NC_013316.1 2315598 2316689 R hypothetical protein complement(2315598..2316689) Clostridium difficile R20291 8470053 YP_003218471.1 CDS pyrD NC_013316.1 2316919 2318004 R dihydroorotate dehydrogenase, catalytic subunit complement(2316919..2318004) Clostridium difficile R20291 8468304 YP_003218472.1 CDS CDR20291_1985 NC_013316.1 2318040 2319353 R amidohydrolase complement(2318040..2319353) Clostridium difficile R20291 8470141 YP_003218473.1 CDS xdhA2 NC_013316.1 2319354 2321645 R xanthine dehydrogenase, molybdenum binding subunit complement(2319354..2321645) Clostridium difficile R20291 8468305 YP_003218474.1 CDS pucC2 NC_013316.1 2321635 2322459 R FAD-binding subunit of xanthine dehydrogenase complement(2321635..2322459) Clostridium difficile R20291 8470433 YP_003218475.1 CDS xdhC NC_013316.1 2322468 2322935 R xanthine dehydrogenase iron-sulfur binding subunit complement(2322468..2322935) Clostridium difficile R20291 8470121 YP_003218476.1 CDS CDR20291_1989 NC_013316.1 2322986 2324410 R amidohydrolase complement(2322986..2324410) Clostridium difficile R20291 8470435 YP_003218477.1 CDS CDR20291_1990 NC_013316.1 2324410 2325780 R D-hydantoinase complement(2324410..2325780) Clostridium difficile R20291 8468306 YP_003218478.1 CDS CDR20291_1991 NC_013316.1 2325913 2327100 R Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase complement(2325913..2327100) Clostridium difficile R20291 8468307 YP_003218479.1 CDS dpaL1 NC_013316.1 2327227 2328441 R catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase complement(2327227..2328441) Clostridium difficile R20291 8468308 YP_003218480.1 CDS CDR20291_1993 NC_013316.1 2328804 2329475 R iron-sulfur flavoprotein complement(2328804..2329475) Clostridium difficile R20291 8469680 YP_003218481.1 CDS CDR20291_1994 NC_013316.1 2329558 2331774 R xanthine dehydrogenase complement(2329558..2331774) Clostridium difficile R20291 8468309 YP_003218482.1 CDS cutS NC_013316.1 2331777 2332247 R carbon monoxide dehydrogenase, iron-sulfur-binding subunit complement(2331777..2332247) Clostridium difficile R20291 8468310 YP_003218483.1 CDS CDR20291_1996 NC_013316.1 2332309 2333730 R amidohydrolase complement(2332309..2333730) Clostridium difficile R20291 8469631 YP_003218484.1 CDS CDR20291_1997 NC_013316.1 2333776 2335158 R xanthine/uracile permease complement(2333776..2335158) Clostridium difficile R20291 8468311 YP_003218485.1 CDS CDR20291_1998 NC_013316.1 2335435 2336793 R xanthine/uracile permease complement(2335435..2336793) Clostridium difficile R20291 8468312 YP_003218486.1 CDS CDR20291_1999 NC_013316.1 2337113 2338153 R sigma-54-dependent transcriptional regulator complement(2337113..2338153) Clostridium difficile R20291 8468313 YP_003218487.1 CDS CDR20291_2000 NC_013316.1 2338480 2339748 R hypothetical protein complement(2338480..2339748) Clostridium difficile R20291 8468314 YP_003218488.1 CDS CDR20291_2001 NC_013316.1 2339741 2341675 R restriction enzyme complement(2339741..2341675) Clostridium difficile R20291 8468315 YP_003218489.1 CDS CDR20291_2002 NC_013316.1 2341704 2342426 R hypothetical protein complement(2341704..2342426) Clostridium difficile R20291 8468316 YP_003218490.1 CDS CDR20291_2003 NC_013316.1 2342476 2343480 R hypothetical protein complement(2342476..2343480) Clostridium difficile R20291 8468317 YP_003218491.1 CDS CDR20291_2004 NC_013316.1 2343519 2344019 R hypothetical protein complement(2343519..2344019) Clostridium difficile R20291 8468318 YP_003218492.1 CDS CDR20291_2005 NC_013316.1 2344305 2344616 R hypothetical protein complement(2344305..2344616) Clostridium difficile R20291 8468319 YP_003218493.1 CDS CDR20291_2006 NC_013316.1 2344756 2347020 R molybdenum-binding subunit of oxidoreductase complement(2344756..2347020) Clostridium difficile R20291 8468320 YP_003218494.1 CDS CDR20291_2007 NC_013316.1 2347024 2347473 R [2Fe-2S]-binding subunit of oxidoreductase complement(2347024..2347473) Clostridium difficile R20291 8468321 YP_003218495.1 CDS CDR20291_2008 NC_013316.1 2347473 2348261 R FAD-binding subunit of oxidoreductase complement(2347473..2348261) Clostridium difficile R20291 8468322 YP_003218496.1 CDS CDR20291_2009 NC_013316.1 2348456 2349724 R Na(+)/H(+) antiporter complement(2348456..2349724) Clostridium difficile R20291 8468323 YP_003218497.1 CDS CDR20291_2010 NC_013316.1 2350375 2351457 R ABC transporter permease complement(2350375..2351457) Clostridium difficile R20291 8468324 YP_003218498.1 CDS CDR20291_2011 NC_013316.1 2351560 2353155 R ABC transporter permease complement(2351560..2353155) Clostridium difficile R20291 8468325 YP_003218499.1 CDS CDR20291_2012 NC_013316.1 2353202 2353972 R ABC transporter ATP-binding protein complement(2353202..2353972) Clostridium difficile R20291 8468326 YP_003218500.1 CDS CDR20291_2013 NC_013316.1 2354161 2355306 D ATP-dependent RNA helicase 2354161..2355306 Clostridium difficile R20291 8468327 YP_003218501.1 CDS CDR20291_2014 NC_013316.1 2355420 2356796 R xanthine/uracil permease complement(2355420..2356796) Clostridium difficile R20291 8468328 YP_003218502.1 CDS CDR20291_2015 NC_013316.1 2357242 2358588 D drug/sodium antiporter 2357242..2358588 Clostridium difficile R20291 8468329 YP_003218503.1 CDS CDR20291_2016 NC_013316.1 2358648 2360060 D sodium:sulfate symporter 2358648..2360060 Clostridium difficile R20291 8468330 YP_003218504.1 CDS fsaB NC_013316.1 2360182 2360856 R fructose-6-phosphate aldolase 2 complement(2360182..2360856) Clostridium difficile R20291 8468331 YP_003218505.1 CDS CDR20291_2018 NC_013316.1 2361130 2361894 D DeoR family transcriptional regulator 2361130..2361894 Clostridium difficile R20291 8469776 YP_003218506.1 CDS CDR20291_2019 NC_013316.1 2362182 2362481 R hypothetical protein complement(2362182..2362481) Clostridium difficile R20291 8468332 YP_003218507.1 CDS CDR20291_2020 NC_013316.1 2362804 2364081 R two-component sensor histidine kinase complement(2362804..2364081) Clostridium difficile R20291 8468333 YP_003218508.1 CDS CDR20291_2021 NC_013316.1 2364065 2364733 R two-component system response regulator complement(2364065..2364733) Clostridium difficile R20291 8468334 YP_003218509.1 CDS CDR20291_2022 NC_013316.1 2364893 2367394 R copper-transporting P-type ATPase complement(2364893..2367394) Clostridium difficile R20291 8468335 YP_003218510.1 CDS bipA NC_013316.1 2368477 2370300 D GTP-binding protein 2368477..2370300 Clostridium difficile R20291 8468336 YP_003218511.1 CDS CDR20291_2024 NC_013316.1 2370390 2371298 R thioredoxin reductase complement(2370390..2371298) Clostridium difficile R20291 8469552 YP_003218512.1 CDS thrC NC_013316.1 2372439 2373920 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2372439..2373920 Clostridium difficile R20291 8468337 YP_003218513.1 CDS thrB NC_013316.1 2373930 2374823 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2373930..2374823 Clostridium difficile R20291 8470376 YP_003218514.1 CDS CDR20291_2027 NC_013316.1 2375010 2376008 D 2-nitropropane dioxygenase 2375010..2376008 Clostridium difficile R20291 8470375 YP_003218515.1 CDS CDR20291_2028 NC_013316.1 2376163 2376675 R hypothetical protein complement(2376163..2376675) Clostridium difficile R20291 8468338 YP_003218516.1 CDS CDR20291_2029 NC_013316.1 2377195 2378130 D cations transporter 2377195..2378130 Clostridium difficile R20291 8468339 YP_003218517.1 CDS CDR20291_2030 NC_013316.1 2378222 2380003 R multiprotein-complex assembly protein complement(2378222..2380003) Clostridium difficile R20291 8468340 YP_003218518.1 CDS CDR20291_2031 NC_013316.1 2380284 2381210 D transporter 2380284..2381210 Clostridium difficile R20291 8468341 YP_003218519.1 CDS CDR20291_2032 NC_013316.1 2381600 2382145 R acetyltransferase complement(2381600..2382145) Clostridium difficile R20291 8468342 YP_003218520.1 CDS CDR20291_2033 NC_013316.1 2382598 2383721 D hypothetical protein join(2382598..2382855,2382927..2383721) Clostridium difficile R20291 8468343 YP_003218521.1 CDS CDR20291_2034 NC_013316.1 2384194 2385018 R hypothetical protein complement(2384194..2385018) Clostridium difficile R20291 8468344 YP_003218522.1 CDS ispG NC_013316.1 2385366 2386421 R 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2385366..2386421) Clostridium difficile R20291 8468345 YP_003218523.1 CDS CDR20291_2036 NC_013316.1 2386604 2387608 R membrane-associated protease complement(2386604..2387608) Clostridium difficile R20291 8469914 YP_003218524.1 CDS dxr NC_013316.1 2387621 2388775 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(2387621..2388775) Clostridium difficile R20291 8468346 YP_003218525.1 CDS CDR20291_2038 NC_013316.1 2388939 2389142 R regulatory protein complement(2388939..2389142) Clostridium difficile R20291 8469686 YP_003218526.1 CDS CDR20291_2039 NC_013316.1 2389479 2390060 D hypothetical protein 2389479..2390060 Clostridium difficile R20291 8468347 YP_003218527.1 CDS CDR20291_2040 NC_013316.1 2390148 2391959 R signaling protein complement(2390148..2391959) Clostridium difficile R20291 8468348 YP_003218528.1 CDS sA NC_013316.1 2392783 2393562 R phosphatidate cytidylyltransferase complement(2392783..2393562) Clostridium difficile R20291 8468349 YP_003218529.1 CDS uppS NC_013316.1 2393575 2394309 R UDP pyrophosphate synthetase complement(2393575..2394309) Clostridium difficile R20291 8470256 YP_003218530.1 CDS CDR20291_2043 NC_013316.1 2394338 2394541 R hypothetical protein complement(2394338..2394541) Clostridium difficile R20291 8470414 YP_003218531.1 CDS frr NC_013316.1 2394544 2395101 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2394544..2395101) Clostridium difficile R20291 8468350 YP_003218532.1 CDS pyrH NC_013316.1 2395127 2395831 R uridylate kinase complement(2395127..2395831) Clostridium difficile R20291 8470250 YP_003218533.1 CDS tsf NC_013316.1 2395916 2396827 R elongation factor Ts complement(2395916..2396827) Clostridium difficile R20291 8470144 YP_003218534.1 CDS rpsB NC_013316.1 2396906 2397619 R 30S ribosomal protein S2 complement(2396906..2397619) Clostridium difficile R20291 8470405 YP_003218535.1 CDS CDR20291_2048 NC_013316.1 2397826 2399019 R D-alanyl-D-alanine carboxypeptidase complement(2397826..2399019) Clostridium difficile R20291 8470229 YP_003218536.1 CDS CDR20291_2049 NC_013316.1 2399114 2400172 R hypothetical protein complement(2399114..2400172) Clostridium difficile R20291 8468351 YP_003218537.1 CDS CDR20291_2050 NC_013316.1 2400386 2401030 R transcriptional regulator complement(2400386..2401030) Clostridium difficile R20291 8468352 YP_003218538.1 CDS CDR20291_2051 NC_013316.1 2401215 2401838 D hypothetical protein 2401215..2401838 Clostridium difficile R20291 8468353 YP_003218539.1 CDS CDR20291_2052 NC_013316.1 2401901 2403811 R DNA mismatch repair protein complement(2401901..2403811) Clostridium difficile R20291 8468354 YP_003218540.1 CDS CDR20291_2053 NC_013316.1 2404348 2405415 R mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; hypothetical protein complement(2404348..2405415) Clostridium difficile R20291 8468355 YP_003218541.1 CDS CDR20291_2054 NC_013316.1 2405661 2406656 R serine/threonine protein kinase complement(2405661..2406656) Clostridium difficile R20291 8468356 YP_003218542.1 CDS CDR20291_2055 NC_013316.1 2406915 2408174 R hypothetical protein complement(2406915..2408174) Clostridium difficile R20291 8468357 YP_003218543.1 CDS CDR20291_2056 NC_013316.1 2408413 2409042 R endonuclease/exonuclease/phosphatase complement(2408413..2409042) Clostridium difficile R20291 8468358 YP_003218544.1 CDS CDR20291_2057 NC_013316.1 2409739 2410908 R hypothetical protein complement(2409739..2410908) Clostridium difficile R20291 8468359 YP_003218545.1 CDS CDR20291_2058 NC_013316.1 2411369 2412409 D glutamyl-aminopeptidase 2411369..2412409 Clostridium difficile R20291 8468360 YP_003218546.1 CDS CDR20291_2059 NC_013316.1 2412790 2413041 D hypothetical protein 2412790..2413041 Clostridium difficile R20291 8468361 YP_003218547.1 CDS CDR20291_2060 NC_013316.1 2413056 2414264 D ATP/GTP-binding protein 2413056..2414264 Clostridium difficile R20291 8468362 YP_003218548.1 CDS CDR20291_2061 NC_013316.1 2414300 2415385 D catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 2414300..2415385 Clostridium difficile R20291 8468363 YP_003218549.1 CDS thiH NC_013316.1 2415386 2416762 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 2415386..2416762 Clostridium difficile R20291 8468364 YP_003218550.1 CDS CDR20291_2063 NC_013316.1 2416853 2417281 D hypothetical protein 2416853..2417281 Clostridium difficile R20291 8468365 YP_003218551.1 CDS gabT NC_013316.1 2417356 2418675 R 4-aminobutyrate aminotransferase complement(2417356..2418675) Clostridium difficile R20291 8468366 YP_003218552.1 CDS CDR20291_2065 NC_013316.1 2418967 2419752 R hypothetical protein complement(2418967..2419752) Clostridium difficile R20291 8469787 YP_003218553.1 CDS CDR20291_2066 NC_013316.1 2419867 2420826 R hypothetical protein complement(2419867..2420826) Clostridium difficile R20291 8468367 YP_003218554.1 CDS CDR20291_2067 NC_013316.1 2420984 2421301 R hypothetical protein complement(2420984..2421301) Clostridium difficile R20291 8468368 YP_003218555.1 CDS CDR20291_2068 NC_013316.1 2421408 2421911 R acetyltransferase complement(2421408..2421911) Clostridium difficile R20291 8468369 YP_003218556.1 CDS CDR20291_2069 NC_013316.1 2421963 2423162 R RNA-binding protein complement(2421963..2423162) Clostridium difficile R20291 8468370 YP_003218557.1 CDS ldh NC_013316.1 2423945 2424913 D L-lactate dehydrogenase 2423945..2424913 Clostridium difficile R20291 8468371 YP_003218558.1 CDS CDR20291_2071 NC_013316.1 2425030 2426160 R hypothetical protein complement(2425030..2426160) Clostridium difficile R20291 8469928 YP_003218559.1 CDS msrAB NC_013316.1 2426313 2427272 R peptide methionine sulfoxide reductase complement(2426313..2427272) Clostridium difficile R20291 8468372 YP_003218560.1 CDS CDR20291_2073 NC_013316.1 2427390 2428313 R patatin-like phospholipase complement(2427390..2428313) Clostridium difficile R20291 8469988 YP_003218561.1 CDS hcp NC_013316.1 2428659 2430251 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(2428659..2430251) Clostridium difficile R20291 8468373 YP_003218562.1 CDS CDR20291_2075 NC_013316.1 2430311 2431036 R iron-sulfur binding protein complement(2430311..2431036) Clostridium difficile R20291 8469860 YP_003218563.1 CDS CDR20291_2076 NC_013316.1 2431177 2431905 D cNMP-binding regulatory protein 2431177..2431905 Clostridium difficile R20291 8468374 YP_003218564.1 CDS CDR20291_2077 NC_013316.1 2432279 2433340 R Sodium:dicarboxylate symporter complement(2432279..2433340) Clostridium difficile R20291 8468375 YP_003218565.1 CDS CDR20291_2078 NC_013316.1 2433932 2434681 R amino acid ABC transporter ATP-binding protein complement(2433932..2434681) Clostridium difficile R20291 8468376 YP_003218566.1 CDS CDR20291_2079 NC_013316.1 2434790 2435980 R peptidase complement(2434790..2435980) Clostridium difficile R20291 8468377 YP_003218567.1 CDS CDR20291_2080 NC_013316.1 2436098 2436895 R amino acid ABC transporter substrate-binding protein complement(2436098..2436895) Clostridium difficile R20291 8468378 YP_003218568.1 CDS CDR20291_2081 NC_013316.1 2436955 2437617 R amino acid ABC transporter permease complement(2436955..2437617) Clostridium difficile R20291 8468379 YP_003218569.1 CDS CDR20291_2082 NC_013316.1 2437853 2438521 R amino acid ABC transporter permease complement(2437853..2438521) Clostridium difficile R20291 8468380 YP_003218570.1 CDS CDR20291_2083 NC_013316.1 2438514 2439317 R amino acid ABC transporter substrate-binding protein complement(2438514..2439317) Clostridium difficile R20291 8468381 YP_003218571.1 CDS CDR20291_2084 NC_013316.1 2439724 2440146 R iron-sulfur subunit of hydrogenase complement(2439724..2440146) Clostridium difficile R20291 8468382 YP_003218572.1 CDS CDR20291_2085 NC_013316.1 2440160 2442337 R formate dehydrogenase complement(2440160..2442337) Clostridium difficile R20291 8468383 YP_003218573.1 CDS CDR20291_2086 NC_013316.1 2442618 2445797 D helicase 2442618..2445797 Clostridium difficile R20291 8468384 YP_003218574.1 CDS CDR20291_2087 NC_013316.1 2446082 2446846 R aromatic compounds hydrolase complement(2446082..2446846) Clostridium difficile R20291 8468385 YP_003218575.1 CDS csdA NC_013316.1 2447083 2448576 R ATP-dependent RNA helicase complement(2447083..2448576) Clostridium difficile R20291 8468386 YP_003218576.1 CDS CDR20291_2089 NC_013316.1 2448901 2449443 R n-acetylmuramoyl-l-alanine amidase complement(2448901..2449443) Clostridium difficile R20291 8469620 YP_003218577.1 CDS CDR20291_2090 NC_013316.1 2449733 2450680 R hypothetical protein complement(2449733..2450680) Clostridium difficile R20291 8468387 YP_003218578.1 CDS CDR20291_2091 NC_013316.1 2450708 2451199 R phage protein complement(2450708..2451199) Clostridium difficile R20291 8468388 YP_003218579.1 CDS CDR20291_2092 NC_013316.1 2451433 2453733 R lipoprotein complement(2451433..2453733) Clostridium difficile R20291 8468389 YP_003218580.1 CDS CDR20291_2093 NC_013316.1 2453781 2454674 R phage-related cell wall hydrolase complement(2453781..2454674) Clostridium difficile R20291 8468390 YP_003218581.1 CDS mapA NC_013316.1 2454900 2457185 R maltose phosphorylase complement(2454900..2457185) Clostridium difficile R20291 8468391 YP_003218582.1 CDS pgmB NC_013316.1 2457182 2457862 R beta-phosphoglucomutase complement(2457182..2457862) Clostridium difficile R20291 8469956 YP_003218583.1 CDS CDR20291_2096 NC_013316.1 2458086 2459969 R cyclomaltodextrinase complement(2458086..2459969) Clostridium difficile R20291 8470072 YP_003218584.1 CDS CDR20291_2097 NC_013316.1 2460227 2461048 R phosphoesterase complement(2460227..2461048) Clostridium difficile R20291 8468392 YP_003218585.1 CDS CDR20291_2098 NC_013316.1 2461239 2461592 R hypothetical protein complement(2461239..2461592) Clostridium difficile R20291 8468393 YP_003218586.1 CDS CDR20291_2099 NC_013316.1 2461634 2463076 R cell surface protein complement(2461634..2463076) Clostridium difficile R20291 8468394 YP_003218587.1 CDS CDR20291_2100 NC_013316.1 2463749 2464963 D regulator of a specific sugar metabolism 2463749..2464963 Clostridium difficile R20291 8468395 YP_003218588.1 CDS CDR20291_2101 NC_013316.1 2465055 2465570 D ferritin 2465055..2465570 Clostridium difficile R20291 8468396 YP_003218589.1 CDS CDR20291_2102 NC_013316.1 2465837 2467936 R acetyl-CoA synthetase complement(2465837..2467936) Clostridium difficile R20291 8468397 YP_003218590.1 CDS CDR20291_2103 NC_013316.1 2468060 2468599 R subunit of oxidoreductase complement(2468060..2468599) Clostridium difficile R20291 8468398 YP_003218591.1 CDS CDR20291_2104 NC_013316.1 2468602 2469342 R subunit of oxidoreductase complement(2468602..2469342) Clostridium difficile R20291 8468399 YP_003218592.1 CDS CDR20291_2105 NC_013316.1 2469344 2470393 R subunit of oxidoreductase complement(2469344..2470393) Clostridium difficile R20291 8468400 YP_003218593.1 CDS CDR20291_2106 NC_013316.1 2470410 2470646 R oxidoreductase, ferredoxin subunit complement(2470410..2470646) Clostridium difficile R20291 8468401 YP_003218594.1 CDS CDR20291_2107 NC_013316.1 2470661 2471764 R histidinol-phosphate aminotransferase complement(2470661..2471764) Clostridium difficile R20291 8468402 YP_003218595.1 CDS CDR20291_2108 NC_013316.1 2471867 2473297 R sugar transporter; lactose permease complement(2471867..2473297) Clostridium difficile R20291 8468403 YP_003218596.1 CDS CDR20291_2109 NC_013316.1 2473955 2475319 D sodium/solute symporter 2473955..2475319 Clostridium difficile R20291 8468404 YP_003218597.1 CDS CDR20291_2110 NC_013316.1 2475343 2475996 D TetR family transcriptional regulator 2475343..2475996 Clostridium difficile R20291 8468405 YP_003218598.1 CDS CDR20291_2111 NC_013316.1 2476115 2476939 R esterase complement(2476115..2476939) Clostridium difficile R20291 8468406 YP_003218599.1 CDS CDR20291_2112 NC_013316.1 2477014 2478180 R hypothetical protein complement(2477014..2478180) Clostridium difficile R20291 8468407 YP_003218600.1 CDS aldH NC_013316.1 2478319 2479683 R aldehyde dehydrogenase complement(2478319..2479683) Clostridium difficile R20291 8468408 YP_003218601.1 CDS CDR20291_2114 NC_013316.1 2479995 2480546 R flavodoxin complement(2479995..2480546) Clostridium difficile R20291 8469488 YP_003218602.1 CDS CDR20291_2115 NC_013316.1 2480569 2481066 R MarR family transcriptional regulator complement(2480569..2481066) Clostridium difficile R20291 8468409 YP_003218603.1 CDS CDR20291_2116 NC_013316.1 2481299 2482576 R GTP-binding protein complement(2481299..2482576) Clostridium difficile R20291 8468410 YP_003218604.1 CDS CDR20291_2117 NC_013316.1 2483295 2485118 R ABC transporter ATP-binding protein/permease complement(2483295..2485118) Clostridium difficile R20291 8468411 YP_003218605.1 CDS CDR20291_2118 NC_013316.1 2485120 2487366 R ABC transporter ATP-binding protein/permease complement(2485120..2487366) Clostridium difficile R20291 8468412 YP_003218606.1 CDS CDR20291_2119 NC_013316.1 2487434 2487895 R MarR family transcriptional regulator complement(2487434..2487895) Clostridium difficile R20291 8468413 YP_003218607.1 CDS CDR20291_2120 NC_013316.1 2488200 2488832 R carbonic anhydrase complement(2488200..2488832) Clostridium difficile R20291 8468414 YP_003218608.1 CDS CDR20291_2121 NC_013316.1 2489453 2489791 D regulatory protein 2489453..2489791 Clostridium difficile R20291 8468415 YP_003218609.1 CDS CDR20291_2122 NC_013316.1 2489813 2490130 D regulatory protein 2489813..2490130 Clostridium difficile R20291 8468416 YP_003218610.1 CDS CDR20291_2123 NC_013316.1 2490280 2490957 D hypothetical protein 2490280..2490957 Clostridium difficile R20291 8468417 YP_003218611.1 CDS aroD NC_013316.1 2491285 2492064 R 3-dehydroquinate dehydratase complement(2491285..2492064) Clostridium difficile R20291 8468418 YP_003218612.1 CDS sat NC_013316.1 2492858 2493490 D streptogramin A acetyltransferase 2492858..2493490 Clostridium difficile R20291 8469509 YP_003218613.1 CDS CDR20291_2126 NC_013316.1 2493861 2494730 R radical SAM protein complement(2493861..2494730) Clostridium difficile R20291 8470258 YP_003218614.1 CDS CDR20291_2127 NC_013316.1 2494827 2495699 R hypothetical protein complement(2494827..2495699) Clostridium difficile R20291 8468419 YP_003218615.1 CDS CDR20291_2128 NC_013316.1 2495899 2497920 R hypothetical protein complement(2495899..2497920) Clostridium difficile R20291 8468420 YP_003218616.1 CDS nirC NC_013316.1 2498188 2498964 R nitrite transporter complement(2498188..2498964) Clostridium difficile R20291 8468421 YP_003218617.1 CDS asrC NC_013316.1 2499021 2499992 R anaerobic sulfite reductase subunit C complement(2499021..2499992) Clostridium difficile R20291 8470015 YP_003218618.1 CDS asrB NC_013316.1 2500005 2500796 R with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B complement(2500005..2500796) Clostridium difficile R20291 8469524 YP_003218619.1 CDS asrA NC_013316.1 2500797 2501804 R anaerobic sulfite reductase subunit A complement(2500797..2501804) Clostridium difficile R20291 8469523 YP_003218620.1 CDS CDR20291_2133 NC_013316.1 2502194 2502898 R cAMP-binding regulatory protein complement(2502194..2502898) Clostridium difficile R20291 8469522 YP_003218621.1 CDS CDR20291_2134 NC_013316.1 2502946 2503794 R RpiR family transcriptional regulator complement(2502946..2503794) Clostridium difficile R20291 8468422 YP_003218622.1 CDS CDR20291_2135 NC_013316.1 2503813 2504700 R glucokinase complement(2503813..2504700) Clostridium difficile R20291 8468423 YP_003218623.1 CDS CDR20291_2136 NC_013316.1 2504758 2505561 R hypothetical protein complement(2504758..2505561) Clostridium difficile R20291 8468424 YP_003218624.1 CDS CDR20291_2137 NC_013316.1 2505721 2506173 R hypothetical protein complement(2505721..2506173) Clostridium difficile R20291 8468425 YP_003218625.1 CDS CDR20291_2138 NC_013316.1 2506303 2507805 R sodium:solute symporter complement(2506303..2507805) Clostridium difficile R20291 8468426 YP_003218626.1 CDS nanA NC_013316.1 2507838 2508719 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(2507838..2508719) Clostridium difficile R20291 8468427 YP_003218627.1 CDS nanE NC_013316.1 2508789 2509460 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(2508789..2509460) Clostridium difficile R20291 8470011 YP_003218628.1 CDS CDR20291_2141 NC_013316.1 2509733 2510224 R hypothetical protein complement(2509733..2510224) Clostridium difficile R20291 8470012 YP_003218629.1 CDS CDR20291_2142 NC_013316.1 2510246 2511610 R hypothetical protein complement(2510246..2511610) Clostridium difficile R20291 8468428 YP_003218630.1 CDS CDR20291_2143 NC_013316.1 2511978 2513204 D signaling protein 2511978..2513204 Clostridium difficile R20291 8468429 YP_003218631.1 CDS asnC NC_013316.1 2513377 2514774 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(2513377..2514774) Clostridium difficile R20291 8468430 YP_003218632.1 CDS CDR20291_2145 NC_013316.1 2515253 2515456 R hypothetical protein complement(2515253..2515456) Clostridium difficile R20291 8469517 YP_003218633.1 CDS cspC NC_013316.1 2515721 2517394 R germination-specific protease complement(2515721..2517394) Clostridium difficile R20291 8468431 YP_003218634.1 CDS cspBA NC_013316.1 2517404 2520802 R germination-specific protease complement(2517404..2520802) Clostridium difficile R20291 8469625 YP_003218635.1 CDS CDR20291_2148 NC_013316.1 2520968 2522164 R hypothetical protein complement(2520968..2522164) Clostridium difficile R20291 8469623 YP_003218636.1 CDS CDR20291_2149 NC_013316.1 2522185 2523006 R ATPase complement(2522185..2523006) Clostridium difficile R20291 8468432 YP_003218637.1 CDS CDR20291_2150 NC_013316.1 2523470 2524564 D hypothetical protein 2523470..2524564 Clostridium difficile R20291 8468433 YP_003218638.1 CDS CDR20291_2151 NC_013316.1 2524715 2525071 D hypothetical protein 2524715..2525071 Clostridium difficile R20291 8468434 YP_003218639.1 CDS kamA NC_013316.1 2525164 2526432 R L-lysine 2,3-aminomutase complement(2525164..2526432) Clostridium difficile R20291 8468435 YP_003218640.1 CDS CDR20291_2153 NC_013316.1 2526834 2528216 R GntR family transcriptional regulator complement(2526834..2528216) Clostridium difficile R20291 8469918 YP_003218641.1 CDS CDR20291_2154 NC_013316.1 2528341 2529027 D amino acid recemase 2528341..2529027 Clostridium difficile R20291 8468436 YP_003218642.1 CDS CDR20291_2155 NC_013316.1 2529213 2530748 R hypothetical protein complement(2529213..2530748) Clostridium difficile R20291 8468437 YP_003218643.1 CDS CDR20291_2156 NC_013316.1 2531023 2532072 D PTS system, EIIc component 2531023..2532072 Clostridium difficile R20291 8468438 YP_003218644.1 CDS CDR20291_2157 NC_013316.1 2532121 2533155 R hypothetical protein complement(2532121..2533155) Clostridium difficile R20291 8468439 YP_003218645.1 CDS CDR20291_2158 NC_013316.1 2533173 2533520 R hypothetical protein complement(2533173..2533520) Clostridium difficile R20291 8468440 YP_003218646.1 CDS CDR20291_2160 NC_013316.1 2535241 2537034 R peptidase complement(2535241..2537034) Clostridium difficile R20291 8468442 YP_003218647.1 CDS CDR20291_2161 NC_013316.1 2537287 2538678 R proton-dependent oligopeptide transporter complement(2537287..2538678) Clostridium difficile R20291 8468443 YP_003218648.1 CDS CDR20291_2162 NC_013316.1 2539132 2540274 R protein export chaperone complement(2539132..2540274) Clostridium difficile R20291 8468444 YP_003218649.1 CDS CDR20291_2163 NC_013316.1 2540385 2541428 R hypothetical protein complement(2540385..2541428) Clostridium difficile R20291 8468445 YP_003218650.1 CDS CDR20291_2164 NC_013316.1 2541957 2542508 R hypothetical protein complement(2541957..2542508) Clostridium difficile R20291 8468446 YP_003218651.1 CDS CDR20291_2165 NC_013316.1 2542536 2544062 R oxidoreductase complement(2542536..2544062) Clostridium difficile R20291 8468447 YP_003218652.1 CDS CDR20291_2166 NC_013316.1 2544442 2545407 R membrane-associated caaX amino terminal protease complement(2544442..2545407) Clostridium difficile R20291 8468448 YP_003218653.1 CDS CDR20291_2167 NC_013316.1 2545979 2547898 R PTS system transporter subunit IIBC complement(2545979..2547898) Clostridium difficile R20291 8468449 YP_003218654.1 CDS fruK NC_013316.1 2547935 2548852 R 1-phosphofructokinase complement(2547935..2548852) Clostridium difficile R20291 8468450 YP_003218655.1 CDS CDR20291_2169 NC_013316.1 2549019 2550797 R transcription antiterminator complement(2549019..2550797) Clostridium difficile R20291 8469775 YP_003218656.1 CDS CDR20291_2170 NC_013316.1 2550809 2551549 R hypothetical protein complement(2550809..2551549) Clostridium difficile R20291 8468451 YP_003218657.1 CDS CDR20291_2171 NC_013316.1 2551823 2552884 D hypothetical protein 2551823..2552884 Clostridium difficile R20291 8468452 YP_003218658.1 CDS CDR20291_2172 NC_013316.1 2553038 2554291 R hypothetical protein complement(2553038..2554291) Clostridium difficile R20291 8468453 YP_003218659.1 CDS CDR20291_2173 NC_013316.1 2554395 2556515 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2554395..2556515) Clostridium difficile R20291 8468454 YP_003218660.1 CDS CDR20291_2174 NC_013316.1 2557221 2558588 D sodium:solute symporter 2557221..2558588 Clostridium difficile R20291 8468455 YP_003218661.1 CDS CDR20291_2175 NC_013316.1 2558761 2559408 R sugar phosphate aldolase complement(2558761..2559408) Clostridium difficile R20291 8468456 YP_003218662.1 CDS araD NC_013316.1 2559426 2560112 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(2559426..2560112) Clostridium difficile R20291 8468457 YP_003218663.1 CDS CDR20291_2177 NC_013316.1 2560187 2561263 R sugar dehydrogenase complement(2560187..2561263) Clostridium difficile R20291 8469496 YP_003218664.1 CDS CDR20291_2178 NC_013316.1 2561589 2562995 R PTS system transporter subunit IIC complement(2561589..2562995) Clostridium difficile R20291 8468458 YP_003218665.1 CDS CDR20291_2179 NC_013316.1 2563176 2563478 R PTS system transporter subunit IIB complement(2563176..2563478) Clostridium difficile R20291 8468459 YP_003218666.1 CDS CDR20291_2180 NC_013316.1 2563601 2564047 R PTS system transporter subunit IIBC complement(2563601..2564047) Clostridium difficile R20291 8468460 YP_003218667.1 CDS CDR20291_2181 NC_013316.1 2564080 2566983 R sigma-54 interacting transcription antiterminator complement(2564080..2566983) Clostridium difficile R20291 8468461 YP_003218668.1 CDS CDR20291_2182 NC_013316.1 2567461 2567883 D hypothetical protein 2567461..2567883 Clostridium difficile R20291 8468462 YP_003218669.1 CDS CDR20291_2183 NC_013316.1 2568792 2570030 D beta-lactamase inducer 2568792..2570030 Clostridium difficile R20291 8468463 YP_003218670.1 CDS CDR20291_2184 NC_013316.1 2570138 2571523 D GntR family transcriptional regulator 2570138..2571523 Clostridium difficile R20291 8468464 YP_003218671.1 CDS CDR20291_2185 NC_013316.1 2571801 2572502 D hypothetical protein 2571801..2572502 Clostridium difficile R20291 8468465 YP_003218672.1 CDS CDR20291_2186 NC_013316.1 2572495 2572818 D hypothetical protein 2572495..2572818 Clostridium difficile R20291 8468466 YP_003218673.1 CDS CDR20291_2187 NC_013316.1 2573024 2575093 R two-component sensor histidine kinase complement(2573024..2575093) Clostridium difficile R20291 8468467 YP_003218674.1 CDS CDR20291_2188 NC_013316.1 2575280 2575972 R two-component system response regulator complement(2575280..2575972) Clostridium difficile R20291 8468468 YP_003218675.1 CDS CDR20291_2189 NC_013316.1 2576768 2576968 R repressor complement(2576768..2576968) Clostridium difficile R20291 8468469 YP_003218676.1 CDS CDR20291_2190 NC_013316.1 2577064 2577441 R regulatory protein complement(2577064..2577441) Clostridium difficile R20291 8468470 YP_003218677.1 CDS CDR20291_2191 NC_013316.1 2578248 2578742 D pilin protein 2578248..2578742 Clostridium difficile R20291 8468471 YP_003218678.1 CDS CDR20291_2193 NC_013316.1 2579765 2579953 R hypothetical protein complement(2579765..2579953) Clostridium difficile R20291 8468473 YP_003218679.1 CDS CDR20291_2194 NC_013316.1 2580115 2580465 D hypothetical protein 2580115..2580465 Clostridium difficile R20291 8468474 YP_003218680.1 CDS CDR20291_2195 NC_013316.1 2580467 2580667 D transcriptional regulator 2580467..2580667 Clostridium difficile R20291 8468475 YP_003218681.1 CDS CDR20291_2196 NC_013316.1 2580923 2581744 R integrase, catalytic region complement(2580923..2581744) Clostridium difficile R20291 8468476 YP_003218682.1 CDS CDR20291_2197 NC_013316.1 2581816 2582487 R CDR20291_2197 complement(2581816..2582487) Clostridium difficile R20291 8468477 YP_003218683.1 CDS cspD NC_013316.1 2583216 2583416 D cold shock protein 2583216..2583416 Clostridium difficile R20291 8468478 YP_003218684.1 CDS CDR20291_2200 NC_013316.1 2584051 2584863 D ABC transporter substrate-binding protein 2584051..2584863 Clostridium difficile R20291 8469626 YP_003218685.1 CDS modB NC_013316.1 2584873 2585664 D ABC transporter permease 2584873..2585664 Clostridium difficile R20291 8468479 YP_003218686.1 CDS CDR20291_2202 NC_013316.1 2585666 2586361 D ABC transporter ATP-binding protein 2585666..2586361 Clostridium difficile R20291 8469977 YP_003218687.1 CDS CDR20291_2203 NC_013316.1 2586348 2587079 D hypothetical protein 2586348..2587079 Clostridium difficile R20291 8468480 YP_003218688.1 CDS CDR20291_2204 NC_013316.1 2587394 2588194 D hypothetical protein 2587394..2588194 Clostridium difficile R20291 8468481 YP_003218689.1 CDS CDR20291_2205 NC_013316.1 2588735 2589451 D two-component response regulator 2588735..2589451 Clostridium difficile R20291 8468482 YP_003218690.1 CDS CDR20291_2206 NC_013316.1 2589432 2591012 D two-component sensor histidine kinase 2589432..2591012 Clostridium difficile R20291 8468483 YP_003218691.1 CDS CDR20291_2207 NC_013316.1 2591324 2592826 R phosphoglucomutase complement(2591324..2592826) Clostridium difficile R20291 8468484 YP_003218692.1 CDS rpe NC_013316.1 2592936 2593601 R ribulose-phosphate 3-epimerase complement(2592936..2593601) Clostridium difficile R20291 8468485 YP_003218693.1 CDS rpiB1 NC_013316.1 2593640 2594086 R ribose-5-phosphate isomerase 1 complement(2593640..2594086) Clostridium difficile R20291 8470189 YP_003218694.1 CDS tkt' NC_013316.1 2594261 2595181 R transketolase complement(2594261..2595181) Clostridium difficile R20291 8470191 YP_003218695.1 CDS tkt NC_013316.1 2595184 2595996 R transketolase complement(2595184..2595996) Clostridium difficile R20291 8470381 YP_003218696.1 CDS CDR20291_2212 NC_013316.1 2596088 2597119 R carbohydrate dehydrogenase complement(2596088..2597119) Clostridium difficile R20291 8470379 YP_003218697.1 CDS gatD NC_013316.1 2597119 2598171 R galactitol-1-phosphate 5-dehydrogenase complement(2597119..2598171) Clostridium difficile R20291 8468486 YP_003218698.1 CDS gatC NC_013316.1 2598301 2599575 R PTS system galactitol-specific transporter subunit IIC complement(2598301..2599575) Clostridium difficile R20291 8469797 YP_003218699.1 CDS gatB NC_013316.1 2599634 2599909 R PTS system galactitol-specific transporter subunit IIB complement(2599634..2599909) Clostridium difficile R20291 8469796 YP_003218700.1 CDS gatA NC_013316.1 2599970 2600428 R PTS system galactitol-specific transporter subunit IIA complement(2599970..2600428) Clostridium difficile R20291 8469795 YP_003218701.1 CDS CDR20291_2217 NC_013316.1 2601017 2603941 R sigma-54 interacting transcription antiterminator complement(2601017..2603941) Clostridium difficile R20291 8469794 YP_003218702.1 CDS tal1 NC_013316.1 2604093 2604743 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase complement(2604093..2604743) Clostridium difficile R20291 8468487 YP_003218703.1 CDS xpt NC_013316.1 2604807 2605379 R Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(2604807..2605379) Clostridium difficile R20291 8470354 YP_003218704.1 CDS mtlD NC_013316.1 2605769 2606920 R mannitol-1-phosphate 5-dehydrogenase complement(2605769..2606920) Clostridium difficile R20291 8470438 YP_003218705.1 CDS mtlF NC_013316.1 2606939 2607361 R PTS system mannitol-specific transporter subunit IIA complement(2606939..2607361) Clostridium difficile R20291 8469990 YP_003218706.1 CDS mtlR NC_013316.1 2607391 2609529 R transcription antiterminator complement(2607391..2609529) Clostridium difficile R20291 8469991 YP_003218707.1 CDS mtlA NC_013316.1 2609555 2610979 R PTS system mannitol-specific transporter subunit IIBC complement(2609555..2610979) Clostridium difficile R20291 8469992 YP_003218708.1 CDS guaB NC_013316.1 2611575 2613074 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 2611575..2613074 Clostridium difficile R20291 8469989 YP_003218709.1 CDS CDR20291_2225 NC_013316.1 2613159 2614316 R toxic anion resistance protein complement(2613159..2614316) Clostridium difficile R20291 8469850 YP_003218710.1 CDS CDR20291_2226 NC_013316.1 2614431 2615351 R hypothetical protein complement(2614431..2615351) Clostridium difficile R20291 8468488 YP_003218711.1 CDS abfH NC_013316.1 2615638 2616756 R NAD-dependent 4-hydroxybutyrate dehydrogenase complement(2615638..2616756) Clostridium difficile R20291 8468489 YP_003218712.1 CDS abfT NC_013316.1 2616776 2618083 R 4-hydroxybutyrate CoA transferase complement(2616776..2618083) Clostridium difficile R20291 8469452 YP_003218713.1 CDS CDR20291_2229 NC_013316.1 2618107 2618382 R hypothetical protein complement(2618107..2618382) Clostridium difficile R20291 8469453 YP_003218714.1 CDS abfD NC_013316.1 2618517 2620013 R gamma-aminobutyrate metabolism dehydratase/isomerase complement(2618517..2620013) Clostridium difficile R20291 8468490 YP_003218715.1 CDS sucD NC_013316.1 2620206 2621597 R succinate-semialdehyde dehydrogenase [NAD(P)+] complement(2620206..2621597) Clostridium difficile R20291 8469451 YP_003218716.1 CDS cat1 NC_013316.1 2621628 2623172 R succinyl-CoA:coenzyme A transferase complement(2621628..2623172) Clostridium difficile R20291 8470350 YP_003218717.1 CDS CDR20291_2233 NC_013316.1 2623199 2624602 R hypothetical protein complement(2623199..2624602) Clostridium difficile R20291 8469560 YP_003218718.1 CDS CDR20291_2234 NC_013316.1 2625019 2625891 D LysR family transcriptional regulator 2625019..2625891 Clostridium difficile R20291 8468491 YP_003218719.1 CDS CDR20291_2235 NC_013316.1 2626078 2626677 R hypothetical protein complement(2626078..2626677) Clostridium difficile R20291 8468492 YP_003218720.1 CDS CDR20291_2236 NC_013316.1 2626790 2627869 R Xaa-Pro dipeptidase complement(2626790..2627869) Clostridium difficile R20291 8468493 YP_003218721.1 CDS grdD NC_013316.1 2628179 2629324 R glycine/sarcosine/betaine reductase complex component C subunit alpha complement(2628179..2629324) Clostridium difficile R20291 8468494 YP_003218722.1 CDS grdC NC_013316.1 2629335 2630882 R glycine/sarcosine/betaine reductase complex component C subunit beta complement(2629335..2630882) Clostridium difficile R20291 8469838 YP_003218723.1 CDS grdB NC_013316.1 2631385 2632434 R glycine reductase complex component B subunit gamma complement(2631385..2632434) Clostridium difficile R20291 8469837 YP_003218724.1 CDS grdA NC_013316.1 2632466 2632939 R GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; glycine/sarcosine/betaine reductase complex protein A complement(join(2632466..2632804,2632808..2632939)) Clostridium difficile R20291 8469836 YP_003218725.1 CDS grdE NC_013316.1 2633051 2634337 R glycine reductase complex component B subunits alpha/beta complement(2633051..2634337) Clostridium difficile R20291 8469835 YP_003218726.1 CDS trxA2 NC_013316.1 2634606 2634923 R thioredoxin complement(2634606..2634923) Clostridium difficile R20291 8469839 YP_003218727.1 CDS trxB3 NC_013316.1 2635008 2635955 R thioredoxin reductase complement(2635008..2635955) Clostridium difficile R20291 8470402 YP_003218728.1 CDS grdX NC_013316.1 2636051 2636422 R glycine reductase complex component complement(2636051..2636422) Clostridium difficile R20291 8470404 YP_003218729.1 CDS CDR20291_2245 NC_013316.1 2636968 2638662 R oligoendopeptidase complement(2636968..2638662) Clostridium difficile R20291 8469842 YP_003218730.1 CDS CDR20291_2246 NC_013316.1 2639154 2639975 D hydrolase 2639154..2639975 Clostridium difficile R20291 8468495 YP_003218731.1 CDS CDR20291_2247 NC_013316.1 2640267 2640752 R hypothetical protein complement(2640267..2640752) Clostridium difficile R20291 8468496 YP_003218732.1 CDS CDR20291_2248 NC_013316.1 2640765 2641535 R aliphatic sulfonate ABC transporter ATP-binding protein complement(2640765..2641535) Clostridium difficile R20291 8468497 YP_003218733.1 CDS CDR20291_2250 NC_013316.1 2642284 2642847 R hypothetical protein complement(2642284..2642847) Clostridium difficile R20291 8468499 YP_003218734.1 CDS CDR20291_2251 NC_013316.1 2642857 2643081 R hypothetical protein complement(2642857..2643081) Clostridium difficile R20291 8468500 YP_003218735.1 CDS CDR20291_2252 NC_013316.1 2643086 2644177 R sulfonate ABC transporter solute-binding lipoprotein complement(2643086..2644177) Clostridium difficile R20291 8468501 YP_003218736.1 CDS CDR20291_2253 NC_013316.1 2644212 2644670 R hypothetical protein complement(2644212..2644670) Clostridium difficile R20291 8468502 YP_003218737.1 CDS CDR20291_2254 NC_013316.1 2644663 2645748 R permease complement(2644663..2645748) Clostridium difficile R20291 8468503 YP_003218738.1 CDS CDR20291_2255 NC_013316.1 2645775 2645975 R hypothetical protein complement(2645775..2645975) Clostridium difficile R20291 8468504 YP_003218739.1 CDS CDR20291_2256 NC_013316.1 2646122 2646454 R hypothetical protein complement(2646122..2646454) Clostridium difficile R20291 8468505 YP_003218740.1 CDS nadC NC_013316.1 2646710 2647546 R nicotinate-nucleotide pyrophosphorylase complement(2646710..2647546) Clostridium difficile R20291 8468506 YP_003218741.1 CDS nadB NC_013316.1 2647527 2648828 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(2647527..2648828) Clostridium difficile R20291 8470007 YP_003218742.1 CDS nadA NC_013316.1 2648841 2649755 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2648841..2649755) Clostridium difficile R20291 8470006 YP_003218743.1 CDS CDR20291_2260 NC_013316.1 2650131 2651630 D carbon starvation protein 2650131..2651630 Clostridium difficile R20291 8470005 YP_003218744.1 CDS CDR20291_2261 NC_013316.1 2651853 2652281 D hypothetical protein 2651853..2652281 Clostridium difficile R20291 8468507 YP_003218745.1 CDS CDR20291_2262 NC_013316.1 2652341 2652649 D hypothetical protein 2652341..2652649 Clostridium difficile R20291 8468508 YP_003218746.1 CDS CDR20291_2263 NC_013316.1 2652796 2653818 R hypothetical protein complement(2652796..2653818) Clostridium difficile R20291 8468509 YP_003218747.1 CDS CDR20291_2264 NC_013316.1 2653993 2654499 R NUDIX family protein complement(2653993..2654499) Clostridium difficile R20291 8468510 YP_003218748.1 CDS CDR20291_2265 NC_013316.1 2654558 2655259 R hypothetical protein complement(2654558..2655259) Clostridium difficile R20291 8468511 YP_003218749.1 CDS CDR20291_2266 NC_013316.1 2655477 2656547 R catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase complement(2655477..2656547) Clostridium difficile R20291 8468512 YP_003218750.1 CDS iorB NC_013316.1 2656600 2657175 R Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit beta complement(2656600..2657175) Clostridium difficile R20291 8468513 YP_003218751.1 CDS iorA NC_013316.1 2657177 2659006 R indolepyruvate oxidoreductase subunit complement(2657177..2659006) Clostridium difficile R20291 8469906 YP_003218752.1 CDS CDR20291_2269 NC_013316.1 2659025 2660284 R aspartate aminotransferase complement(2659025..2660284) Clostridium difficile R20291 8469905 YP_003218753.1 CDS CDR20291_2270 NC_013316.1 2660546 2662546 R sigma-54 interacting regulatory protein complement(2660546..2662546) Clostridium difficile R20291 8468514 YP_003218754.1 CDS CDR20291_2271 NC_013316.1 2662554 2664449 R signaling protein complement(2662554..2664449) Clostridium difficile R20291 8468515 YP_003218755.1 CDS CDR20291_2272 NC_013316.1 2664467 2666275 R signaling protein complement(2664467..2666275) Clostridium difficile R20291 8468516 YP_003218756.1 CDS CDR20291_2273 NC_013316.1 2666439 2666858 R hypothetical protein complement(2666439..2666858) Clostridium difficile R20291 8468517 YP_003218757.1 CDS CDR20291_2274 NC_013316.1 2667684 2668706 D dehydrogenase 2667684..2668706 Clostridium difficile R20291 8468518 YP_003218758.1 CDS CDR20291_2276 NC_013316.1 2669443 2670465 R beta-lactamase inducer complement(2669443..2670465) Clostridium difficile R20291 8468520 YP_003218759.1 CDS CDR20291_2277 NC_013316.1 2670470 2670847 R beta-lactamase repressor complement(2670470..2670847) Clostridium difficile R20291 8468521 YP_003218760.1 CDS CDR20291_2278 NC_013316.1 2672594 2673121 R peptidoglycan-binding/hydrolysing protein complement(2672594..2673121) Clostridium difficile R20291 8468522 YP_003218761.1 CDS CDR20291_2279 NC_013316.1 2673247 2674281 R beta-lactamase inducer complement(2673247..2674281) Clostridium difficile R20291 8468523 YP_003218762.1 CDS CDR20291_2280 NC_013316.1 2674274 2674648 R beta-lactamase repressor complement(2674274..2674648) Clostridium difficile R20291 8468524 YP_003218763.1 CDS CDR20291_2281 NC_013316.1 2675291 2675773 R hypothetical protein complement(2675291..2675773) Clostridium difficile R20291 8468525 YP_003218764.1 CDS CDR20291_2282 NC_013316.1 2676065 2676769 R hypothetical protein complement(2676065..2676769) Clostridium difficile R20291 8468526 YP_003218765.1 CDS CDR20291_2283 NC_013316.1 2677123 2678139 R transglycosylase complement(2677123..2678139) Clostridium difficile R20291 8468527 YP_003218766.1 CDS CDR20291_2284 NC_013316.1 2678267 2678773 R DNA polymerase III subunit epsilon complement(2678267..2678773) Clostridium difficile R20291 8468528 YP_003218767.1 CDS CDR20291_2285 NC_013316.1 2678932 2679600 R hypothetical protein complement(2678932..2679600) Clostridium difficile R20291 8468529 YP_003218768.1 CDS CDR20291_2286 NC_013316.1 2680013 2680519 R hypothetical protein complement(2680013..2680519) Clostridium difficile R20291 8468530 YP_003218769.1 CDS CDR20291_2287 NC_013316.1 2680889 2681926 R exonuclease complement(2680889..2681926) Clostridium difficile R20291 8468531 YP_003218770.1 CDS CDR20291_2288 NC_013316.1 2681965 2682825 R hypothetical protein complement(2681965..2682825) Clostridium difficile R20291 8468532 YP_003218771.1 CDS CDR20291_2289 NC_013316.1 2683104 2683313 D hypothetical protein 2683104..2683313 Clostridium difficile R20291 8468533 YP_003218772.1 CDS cotJB2 NC_013316.1 2683313 2683579 D spore-coat protein 2683313..2683579 Clostridium difficile R20291 8468534 YP_003218773.1 CDS cotJC2 NC_013316.1 2683608 2684180 D spore-coat protein 2683608..2684180 Clostridium difficile R20291 8469613 YP_003218774.1 CDS CDR20291_2292 NC_013316.1 2684414 2685604 R cell wall hydrolase complement(2684414..2685604) Clostridium difficile R20291 8469615 YP_003218775.1 CDS dut NC_013316.1 2685864 2686295 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(2685864..2686295) Clostridium difficile R20291 8468535 YP_003218776.1 CDS CDR20291_2294 NC_013316.1 2686408 2688636 D DNA topoisomerase 2686408..2688636 Clostridium difficile R20291 8469685 YP_003218777.1 CDS CDR20291_2295 NC_013316.1 2688747 2689232 R MarR family transcriptional regulator complement(2688747..2689232) Clostridium difficile R20291 8468536 YP_003218778.1 CDS CDR20291_2296 NC_013316.1 2689460 2690707 D lipoprotein 2689460..2690707 Clostridium difficile R20291 8468537 YP_003218779.1 CDS CDR20291_2297 NC_013316.1 2690711 2693845 D multidrug efflux pump, membrane protein 2690711..2693845 Clostridium difficile R20291 8468538 YP_003218780.1 CDS CDR20291_2298 NC_013316.1 2693879 2695177 D multidrug efflux pump, outer membrane protein 2693879..2695177 Clostridium difficile R20291 8468539 YP_003218781.1 CDS CDR20291_2299 NC_013316.1 2695387 2696214 R transposase complement(2695387..2696214) Clostridium difficile R20291 8468540 YP_003218782.1 CDS CDR20291_2300 NC_013316.1 2696770 2697039 R hypothetical protein complement(2696770..2697039) Clostridium difficile R20291 8468541 YP_003218783.1 CDS ppdK NC_013316.1 2697229 2699871 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(2697229..2699871) Clostridium difficile R20291 8468542 YP_003218784.1 CDS CDR20291_2302 NC_013316.1 2699917 2700759 R hypothetical protein complement(2699917..2700759) Clostridium difficile R20291 8470098 YP_003218785.1 CDS CDR20291_2303 NC_013316.1 2700766 2701404 R hypothetical protein complement(2700766..2701404) Clostridium difficile R20291 8468543 YP_003218786.1 CDS CDR20291_2304 NC_013316.1 2701840 2703132 R hypothetical protein complement(2701840..2703132) Clostridium difficile R20291 8468544 YP_003218787.1 CDS srlB NC_013316.1 2703169 2703525 R PTS system transporter subunit IIA complement(2703169..2703525) Clostridium difficile R20291 8468545 YP_003218788.1 CDS CDR20291_2306 NC_013316.1 2703560 2703919 R hypothetical protein complement(2703560..2703919) Clostridium difficile R20291 8470337 YP_003218789.1 CDS CDR20291_2307 NC_013316.1 2703988 2706027 R transcription antiterminator complement(2703988..2706027) Clostridium difficile R20291 8468546 YP_003218790.1 CDS srlE NC_013316.1 2706183 2707196 R PTS system glucitol/sorbitol-specific transporter subunit IIBC complement(2706183..2707196) Clostridium difficile R20291 8468547 YP_003218791.1 CDS srlA NC_013316.1 2707209 2707754 R PTS system glucitol/sorbitol-specific transporter subunit IIC2 complement(2707209..2707754) Clostridium difficile R20291 8470339 YP_003218792.1 CDS CDR20291_2310 NC_013316.1 2708130 2708966 R AraC family transcriptional regulator complement(2708130..2708966) Clostridium difficile R20291 8470335 YP_003218793.1 CDS CDR20291_2311 NC_013316.1 2709151 2710320 R hypothetical protein complement(2709151..2710320) Clostridium difficile R20291 8468548 YP_003218794.1 CDS CDR20291_2312 NC_013316.1 2710502 2711638 R peptidase complement(2710502..2711638) Clostridium difficile R20291 8468549 YP_003218795.1 CDS acp NC_013316.1 2711694 2713157 R sodium/proton-dependent alanine carrier protein complement(2711694..2713157) Clostridium difficile R20291 8468550 YP_003218796.1 CDS CDR20291_2314 NC_013316.1 2713733 2714995 R transporter complement(2713733..2714995) Clostridium difficile R20291 8469468 YP_003218797.1 CDS CDR20291_2315 NC_013316.1 2715019 2716227 R aminotransferase complement(2715019..2716227) Clostridium difficile R20291 8468551 YP_003218798.1 CDS CDR20291_2316 NC_013316.1 2716257 2717150 R phosphate butyryltransferase complement(2716257..2717150) Clostridium difficile R20291 8468552 YP_003218799.1 CDS CDR20291_2317 NC_013316.1 2717168 2718226 R catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase complement(2717168..2718226) Clostridium difficile R20291 8468553 YP_003218800.1 CDS CDR20291_2318 NC_013316.1 2718383 2718922 R oxidoreductase subunit complement(2718383..2718922) Clostridium difficile R20291 8468554 YP_003218801.1 CDS CDR20291_2319 NC_013316.1 2718935 2719654 R oxidoreductase subunit complement(2718935..2719654) Clostridium difficile R20291 8468555 YP_003218802.1 CDS CDR20291_2320 NC_013316.1 2719657 2720733 R oxidoreductase subunit complement(2719657..2720733) Clostridium difficile R20291 8468556 YP_003218803.1 CDS CDR20291_2321 NC_013316.1 2720762 2720959 R oxidoreductase ferredoxin subunit complement(2720762..2720959) Clostridium difficile R20291 8468557 YP_003218804.1 CDS CDR20291_2322 NC_013316.1 2721242 2722009 R IclR family transcriptional regulator complement(2721242..2722009) Clostridium difficile R20291 8468558 YP_003218805.1 CDS CDR20291_2323 NC_013316.1 2722289 2723836 D nitrite/sulfite reductase 2722289..2723836 Clostridium difficile R20291 8468559 YP_003218806.1 CDS glyS NC_013316.1 2724002 2726068 R glycyl-tRNA synthetase subunit beta complement(2724002..2726068) Clostridium difficile R20291 8468560 YP_003218807.1 CDS glyQ NC_013316.1 2726068 2726946 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(2726068..2726946) Clostridium difficile R20291 8469831 YP_003218808.1 CDS CDR20291_2326 NC_013316.1 2727106 2727705 R hypothetical protein complement(2727106..2727705) Clostridium difficile R20291 8469830 YP_003218809.1 CDS recO NC_013316.1 2727698 2728471 R DNA repair protein complement(2727698..2728471) Clostridium difficile R20291 8468561 YP_003218810.1 CDS CDR20291_2328 NC_013316.1 2728665 2730044 R Mg2+ transporter complement(2728665..2730044) Clostridium difficile R20291 8470165 YP_003218811.1 CDS era NC_013316.1 2730056 2730949 R GTP-binding protein complement(2730056..2730949) Clostridium difficile R20291 8468562 YP_003218812.1 CDS d NC_013316.1 2731013 2731414 R cytidine deaminase complement(2731013..2731414) Clostridium difficile R20291 8469692 YP_003218813.1 CDS CDR20291_2331 NC_013316.1 2731533 2732252 R membrane-associated kinase and phosphatase complement(2731533..2732252) Clostridium difficile R20291 8469640 YP_003218814.1 CDS CDR20291_2332 NC_013316.1 2732258 2732719 R hypothetical protein complement(2732258..2732719) Clostridium difficile R20291 8468563 YP_003218815.1 CDS CDR20291_2333 NC_013316.1 2732776 2733792 R PhoH-like protein complement(2732776..2733792) Clostridium difficile R20291 8468564 YP_003218816.1 CDS spoIV NC_013316.1 2733830 2735137 R stage IV sporulation protein complement(2733830..2735137) Clostridium difficile R20291 8468565 YP_003218817.1 CDS CDR20291_2335 NC_013316.1 2735186 2735428 R hypothetical protein complement(2735186..2735428) Clostridium difficile R20291 8470325 YP_003218818.1 CDS CDR20291_2336 NC_013316.1 2735635 2736198 R sigma 54 modulation protein complement(2735635..2736198) Clostridium difficile R20291 8468566 YP_003218819.1 CDS CDR20291_2337 NC_013316.1 2736391 2736888 R hypothetical protein complement(2736391..2736888) Clostridium difficile R20291 8468567 YP_003218820.1 CDS rpsU NC_013316.1 2736999 2737442 R tRNA binding protein complement(2736999..2737442) Clostridium difficile R20291 8468568 YP_003218821.1 CDS rpsU NC_013316.1 2737472 2737651 R 30S ribosomal protein S21 complement(2737472..2737651) Clostridium difficile R20291 8470248 YP_003218822.1 CDS CDR20291_2340 NC_013316.1 2737814 2738164 R histidine triad nucleotide-binding protein complement(2737814..2738164) Clostridium difficile R20291 8470249 YP_003218823.1 CDS CDR20291_2341 NC_013316.1 2738207 2739505 R radical SAM protein complement(2738207..2739505) Clostridium difficile R20291 8468569 YP_003218824.1 CDS CDR20291_2342 NC_013316.1 2739507 2740265 R hypothetical protein complement(2739507..2740265) Clostridium difficile R20291 8468570 YP_003218825.1 CDS prmA NC_013316.1 2740284 2741231 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(2740284..2741231) Clostridium difficile R20291 8468571 YP_003218826.1 CDS CDR20291_2344 NC_013316.1 2741672 2744080 R ATP-dependent helicase complement(2741672..2744080) Clostridium difficile R20291 8470109 YP_003218827.1 CDS CDR20291_2345 NC_013316.1 2744107 2744913 R hypothetical protein complement(2744107..2744913) Clostridium difficile R20291 8468572 YP_003218828.1 CDS CDR20291_2346 NC_013316.1 2744929 2745942 R hypothetical protein complement(2744929..2745942) Clostridium difficile R20291 8468573 YP_003218829.1 CDS CDR20291_2347 NC_013316.1 2745962 2747437 R hypothetical protein complement(2745962..2747437) Clostridium difficile R20291 8468574 YP_003218830.1 CDS CDR20291_2348 NC_013316.1 2747442 2748179 R hypothetical protein complement(2747442..2748179) Clostridium difficile R20291 8468575 YP_003218831.1 CDS CDR20291_2349 NC_013316.1 2748438 2749547 D ABC transporter ATP-binding protein 2748438..2749547 Clostridium difficile R20291 8468576 YP_003218832.1 CDS CDR20291_2350 NC_013316.1 2749577 2750344 D hypothetical protein 2749577..2750344 Clostridium difficile R20291 8468577 YP_003218833.1 CDS CDR20291_2351 NC_013316.1 2750532 2751905 R transporter complement(2750532..2751905) Clostridium difficile R20291 8468578 YP_003218834.1 CDS glcK NC_013316.1 2751941 2752876 R glucokinase complement(2751941..2752876) Clostridium difficile R20291 8468579 YP_003218835.1 CDS dnaJ NC_013316.1 2753842 2754996 R chaperone protein complement(2753842..2754996) Clostridium difficile R20291 8469805 YP_003218836.1 CDS dnaK NC_013316.1 2755207 2757054 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(2755207..2757054) Clostridium difficile R20291 8469675 YP_003218837.1 CDS grpE NC_013316.1 2757146 2757766 R heat shock protein complement(2757146..2757766) Clostridium difficile R20291 8469676 YP_003218838.1 CDS hrcA NC_013316.1 2757796 2758842 R heat-inducible transcription repressor complement(2757796..2758842) Clostridium difficile R20291 8469846 YP_003218839.1 CDS hemN NC_013316.1 2758918 2760093 R oxygen-independent coproporphyrinogen III oxidase complement(2758918..2760093) Clostridium difficile R20291 8469887 YP_003218840.1 CDS CDR20291_2358 NC_013316.1 2760265 2761578 R amino acid transporter complement(2760265..2761578) Clostridium difficile R20291 8469865 YP_003218841.1 CDS CDR20291_2359 NC_013316.1 2761811 2763223 R poly(A) polymerase complement(2761811..2763223) Clostridium difficile R20291 8468580 YP_003218842.1 CDS lepA NC_013316.1 2763299 2765104 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2763299..2765104) Clostridium difficile R20291 8468581 YP_003218843.1 CDS CDR20291_2361 NC_013316.1 2765386 2765637 R hypothetical protein complement(2765386..2765637) Clostridium difficile R20291 8469930 YP_003218844.1 CDS spoIIP NC_013316.1 2765668 2766687 R stage II sporulation protein P complement(2765668..2766687) Clostridium difficile R20291 8468582 YP_003218845.1 CDS gpr NC_013316.1 2766705 2767658 R Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease complement(2766705..2767658) Clostridium difficile R20291 8470323 YP_003218846.1 CDS CDR20291_2364 NC_013316.1 2768001 2768777 R hypothetical protein complement(2768001..2768777) Clostridium difficile R20291 8469834 YP_003218847.1 CDS CDR20291_2365 NC_013316.1 2768811 2769332 R hypothetical protein complement(2768811..2769332) Clostridium difficile R20291 8468583 YP_003218848.1 CDS rpsT NC_013316.1 2769931 2770197 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2769931..2770197 Clostridium difficile R20291 8468584 YP_003218849.1 CDS CDR20291_2367 NC_013316.1 2770384 2771376 R hypothetical protein complement(2770384..2771376) Clostridium difficile R20291 8470247 YP_003218850.1 CDS CDR20291_2369 NC_013316.1 2772798 2773982 R hypothetical protein complement(2772798..2773982) Clostridium difficile R20291 8468586 YP_003218851.1 CDS CDR20291_2370 NC_013316.1 2773991 2774896 R hypothetical protein complement(2773991..2774896) Clostridium difficile R20291 8468587 YP_003218852.1 CDS CDR20291_2371 NC_013316.1 2775084 2775920 D metallo-beta-lactamase 2775084..2775920 Clostridium difficile R20291 8468588 YP_003218853.1 CDS CDR20291_2372 NC_013316.1 2776062 2776769 R hypothetical protein complement(2776062..2776769) Clostridium difficile R20291 8468589 YP_003218854.1 CDS CDR20291_2373 NC_013316.1 2777259 2778098 R hypothetical protein complement(2777259..2778098) Clostridium difficile R20291 8468590 YP_003218855.1 CDS ung NC_013316.1 2778347 2779021 R uracil-DNA glycosylase complement(2778347..2779021) Clostridium difficile R20291 8468591 YP_003218856.1 CDS CDR20291_2375 NC_013316.1 2779058 2779429 R lipoprotein complement(2779058..2779429) Clostridium difficile R20291 8470412 YP_003218857.1 CDS CDR20291_2376 NC_013316.1 2779496 2780554 D hypothetical protein 2779496..2780554 Clostridium difficile R20291 8468592 YP_003218858.1 CDS CDR20291_2377 NC_013316.1 2780745 2781923 R aminotransferase complement(2780745..2781923) Clostridium difficile R20291 8468593 YP_003218859.1 CDS CDR20291_2378 NC_013316.1 2781977 2783041 R Xaa-Pro dipeptidase complement(2781977..2783041) Clostridium difficile R20291 8468594 YP_003218860.1 CDS CDR20291_2379 NC_013316.1 2783146 2784408 R PTS system transporter subunit IIC complement(2783146..2784408) Clostridium difficile R20291 8468595 YP_003218861.1 CDS CDR20291_2380 NC_013316.1 2784433 2784750 R PTS system transporter subunit IIB complement(2784433..2784750) Clostridium difficile R20291 8468596 YP_003218862.1 CDS CDR20291_2381 NC_013316.1 2784809 2785264 R pts system transporter subunit IIA complement(2784809..2785264) Clostridium difficile R20291 8468597 YP_003218863.1 CDS CDR20291_2382 NC_013316.1 2785279 2787168 R transcriptional antiterminator complement(2785279..2787168) Clostridium difficile R20291 8468598 YP_003218864.1 CDS CDR20291_2383 NC_013316.1 2787256 2788617 R peptidase complement(2787256..2788617) Clostridium difficile R20291 8468599 YP_003218865.1 CDS pmi NC_013316.1 2788790 2789734 D mannose-6-phosphate isomerase 2788790..2789734 Clostridium difficile R20291 8468600 YP_003218866.1 CDS CDR20291_2385 NC_013316.1 2789853 2792540 R sensor histidine kinase complement(2789853..2792540) Clostridium difficile R20291 8470091 YP_003218867.1 CDS selB NC_013316.1 2792696 2794579 R selenocysteine-specific elongation factor complement(2792696..2794579) Clostridium difficile R20291 8468601 YP_003218868.1 CDS fdhA NC_013316.1 2794693 2796105 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(2794693..2796105) Clostridium difficile R20291 8470271 YP_003218869.1 CDS selD NC_013316.1 2796123 2797073 R selenide,water dikinase complement(2796123..2797073) Clostridium difficile R20291 8469720 YP_003218870.1 CDS comE NC_013316.1 2797261 2797965 R competence protein complement(2797261..2797965) Clostridium difficile R20291 8470272 YP_003218871.1 CDS CDR20291_2390 NC_013316.1 2798045 2799334 D D-alanyl-D-alanine carboxypeptidase 2798045..2799334 Clostridium difficile R20291 8469608 YP_003218872.1 CDS CDR20291_2391 NC_013316.1 2799461 2799799 R hypothetical protein complement(2799461..2799799) Clostridium difficile R20291 8468602 YP_003218873.1 CDS argH NC_013316.1 2800048 2801364 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(2800048..2801364) Clostridium difficile R20291 8468603 YP_003218874.1 CDS CDR20291_2393 NC_013316.1 2801741 2802562 R hydrolase complement(2801741..2802562) Clostridium difficile R20291 8469502 YP_003218875.1 CDS CDR20291_2394 NC_013316.1 2802923 2804026 D histidinol-phosphate aminotransferase 2802923..2804026 Clostridium difficile R20291 8468604 YP_003218876.1 CDS CDR20291_2395 NC_013316.1 2804084 2806723 R cation-transporting ATPase complement(2804084..2806723) Clostridium difficile R20291 8468605 YP_003218877.1 CDS CDR20291_2396 NC_013316.1 2807048 2807695 R D-alanyl-D-alanine carboxypeptidase complement(2807048..2807695) Clostridium difficile R20291 8468606 YP_003218878.1 CDS CDR20291_2397 NC_013316.1 2807956 2808864 D TetR family transcriptional regulator 2807956..2808864 Clostridium difficile R20291 8468607 YP_003218879.1 CDS CDR20291_2398 NC_013316.1 2808868 2810268 D transporter 2808868..2810268 Clostridium difficile R20291 8468608 YP_003218880.1 CDS CDR20291_2399 NC_013316.1 2810392 2811111 R hypothetical protein complement(2810392..2811111) Clostridium difficile R20291 8468609 YP_003218881.1 CDS CDR20291_2400 NC_013316.1 2811158 2811946 R AraC family transcriptional regulator complement(2811158..2811946) Clostridium difficile R20291 8468610 YP_003218882.1 CDS CDR20291_2401 NC_013316.1 2812047 2813399 R 6-phospho-alpha-glucosidase complement(2812047..2813399) Clostridium difficile R20291 8468611 YP_003218883.1 CDS CDR20291_2402 NC_013316.1 2813496 2815001 R PTS system transporter subunit IIBC complement(2813496..2815001) Clostridium difficile R20291 8468612 YP_003218884.1 CDS CDR20291_2403 NC_013316.1 2815097 2815912 R transcriptional antiterminator complement(2815097..2815912) Clostridium difficile R20291 8468613 YP_003218885.1 CDS CDR20291_2404 NC_013316.1 2815933 2816415 R PTS system transporter subunit IIA complement(2815933..2816415) Clostridium difficile R20291 8468614 YP_003218886.1 CDS CDR20291_2405 NC_013316.1 2816699 2817079 R translation inhibitor endoribonuclease complement(2816699..2817079) Clostridium difficile R20291 8468615 YP_003218887.1 CDS tdcB NC_013316.1 2817174 2818391 R threonine dehydratase catabolic complement(2817174..2818391) Clostridium difficile R20291 8468616 YP_003218888.1 CDS aspD NC_013316.1 2819050 2820678 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2819050..2820678 Clostridium difficile R20291 8470359 YP_003218889.1 CDS CDR20291_2408 NC_013316.1 2820799 2821794 D L-asparaginase 2820799..2821794 Clostridium difficile R20291 8469520 YP_003218890.1 CDS CDR20291_2409 NC_013316.1 2821952 2822638 R hypothetical protein complement(2821952..2822638) Clostridium difficile R20291 8468617 YP_003218891.1 CDS leuS NC_013316.1 2823458 2825878 R leucyl-tRNA synthetase complement(2823458..2825878) Clostridium difficile R20291 8468618 YP_003218892.1 CDS CDR20291_2411 NC_013316.1 2826232 2826582 R hypothetical protein complement(2826232..2826582) Clostridium difficile R20291 8469935 YP_003218893.1 CDS CDR20291_2412 NC_013316.1 2826699 2827271 R metal dependent phosphohydrolase complement(2826699..2827271) Clostridium difficile R20291 8468619 YP_003218894.1 CDS nadD NC_013316.1 2827272 2827961 R nicotinate-nucleotide adenylyltransferase complement(2827272..2827961) Clostridium difficile R20291 8468620 YP_003218895.1 CDS gbeA NC_013316.1 2829028 2831031 D glycogen branching enzyme 2829028..2831031 Clostridium difficile R20291 8468621 YP_003218896.1 CDS CDR20291_2416 NC_013316.1 2831334 2831645 R hypothetical protein complement(2831334..2831645) Clostridium difficile R20291 8469798 YP_003218897.1 CDS CDR20291_2417 NC_013316.1 2831723 2832541 R hypothetical protein complement(2831723..2832541) Clostridium difficile R20291 8468622 YP_003218898.1 CDS CDR20291_2418 NC_013316.1 2832641 2833165 R hypothetical protein complement(2832641..2833165) Clostridium difficile R20291 8468623 YP_003218899.1 CDS CDR20291_2419 NC_013316.1 2833184 2834326 R aminotransferase complement(2833184..2834326) Clostridium difficile R20291 8468624 YP_003218900.1 CDS CDR20291_2420 NC_013316.1 2834605 2836992 R ABC transporter permease complement(2834605..2836992) Clostridium difficile R20291 8468625 YP_003218901.1 CDS CDR20291_2421 NC_013316.1 2836985 2837668 R ABC transporter ATP-binding protein complement(2836985..2837668) Clostridium difficile R20291 8468626 YP_003218902.1 CDS CDR20291_2422 NC_013316.1 2837785 2839095 R two-component sensor histidine kinase complement(2837785..2839095) Clostridium difficile R20291 8468627 YP_003218903.1 CDS CDR20291_2423 NC_013316.1 2839089 2839817 R two-component response regulator complement(2839089..2839817) Clostridium difficile R20291 8468628 YP_003218904.1 CDS CDR20291_2424 NC_013316.1 2840100 2841941 R membrane-associated 5'-nucleotidase/phosphoesterase complement(2840100..2841941) Clostridium difficile R20291 8468629 YP_003218905.1 CDS CDR20291_2425 NC_013316.1 2842154 2843038 R lipoprotein complement(2842154..2843038) Clostridium difficile R20291 8468630 YP_003218906.1 CDS elaC NC_013316.1 2843246 2844163 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2843246..2844163 Clostridium difficile R20291 8468631 YP_003218907.1 CDS nox NC_013316.1 2844292 2845662 R CoADR; specific for coenzyme A disulfide; requires NADH; involved in protecting cells against reactive oxygen species by recycling coenzyme A disulfide which can reduce hydrogen peroxide; coenzyme A disulfide reductase complement(2844292..2845662) Clostridium difficile R20291 8469689 YP_003218908.1 CDS CDR20291_2428 NC_013316.1 2845998 2847356 D sodium:dicarboxylate symporter family protein 2845998..2847356 Clostridium difficile R20291 8470017 YP_003218909.1 CDS CDR20291_2429 NC_013316.1 2847437 2848645 R hypothetical protein complement(2847437..2848645) Clostridium difficile R20291 8468632 YP_003218910.1 CDS CDR20291_2430 NC_013316.1 2848660 2850078 R polysaccharide O-acetylase complement(2848660..2850078) Clostridium difficile R20291 8468633 YP_003218911.1 CDS CDR20291_2431 NC_013316.1 2850096 2851211 R hypothetical protein complement(2850096..2851211) Clostridium difficile R20291 8468634 YP_003218912.1 CDS CDR20291_2432 NC_013316.1 2851183 2853489 R cellulose synthase catalytic subunit complement(2851183..2853489) Clostridium difficile R20291 8468635 YP_003218913.1 CDS CDR20291_2433 NC_013316.1 2853494 2854543 R endoglucanase complement(2853494..2854543) Clostridium difficile R20291 8468636 YP_003218914.1 CDS CDR20291_2434 NC_013316.1 2854779 2856527 R hypothetical protein complement(2854779..2856527) Clostridium difficile R20291 8468637 YP_003218915.1 CDS CDR20291_2435 NC_013316.1 2856584 2857393 R sugar transporter permease complement(2856584..2857393) Clostridium difficile R20291 8468638 YP_003218916.1 CDS CDR20291_2436 NC_013316.1 2857409 2858326 R sugar transporter permease complement(2857409..2858326) Clostridium difficile R20291 8468639 YP_003218917.1 CDS CDR20291_2437 NC_013316.1 2858424 2859734 R sugar transporter, substrate-binding lipoprotein complement(2858424..2859734) Clostridium difficile R20291 8468640 YP_003218918.1 CDS CDR20291_2438 NC_013316.1 2860057 2860797 R hypothetical protein complement(2860057..2860797) Clostridium difficile R20291 8468641 YP_003218919.1 CDS ulaA NC_013316.1 2860800 2862059 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2860800..2862059) Clostridium difficile R20291 8468642 YP_003218920.1 CDS CDR20291_2440 NC_013316.1 2862192 2862479 R phosphotransferase system, B component complement(2862192..2862479) Clostridium difficile R20291 8470386 YP_003218921.1 CDS CDR20291_2441 NC_013316.1 2862492 2864411 R bifunctional B component of phosphotransferase system/transcriptional antiterminator complement(2862492..2864411) Clostridium difficile R20291 8468643 YP_003218922.1 CDS CDR20291_2442 NC_013316.1 2864755 2865279 R hypothetical protein complement(2864755..2865279) Clostridium difficile R20291 8468644 YP_003218923.1 CDS coaD NC_013316.1 2865283 2865780 R phosphopantetheine adenylyltransferase complement(2865283..2865780) Clostridium difficile R20291 8468645 YP_003218924.1 CDS CDR20291_2444 NC_013316.1 2865782 2866336 R hypothetical protein complement(2865782..2866336) Clostridium difficile R20291 8469601 YP_003218925.1 CDS recG NC_013316.1 2866395 2868464 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(2866395..2868464) Clostridium difficile R20291 8468646 YP_003218926.1 CDS CDR20291_2446 NC_013316.1 2868533 2870176 R phosphatase complement(2868533..2870176) Clostridium difficile R20291 8470162 YP_003218927.1 CDS CDR20291_2447 NC_013316.1 2870195 2870545 R hypothetical protein complement(2870195..2870545) Clostridium difficile R20291 8468647 YP_003218928.1 CDS rpmB NC_013316.1 2870906 2871094 D required for 70S ribosome assembly; 50S ribosomal protein L28 2870906..2871094 Clostridium difficile R20291 8468648 YP_003218929.1 CDS CDR20291_2449 NC_013316.1 2871504 2871980 R hypothetical protein complement(2871504..2871980) Clostridium difficile R20291 8470215 YP_003218930.1 CDS CDR20291_2450 NC_013316.1 2872199 2872960 D MerR family transcriptional regulator 2872199..2872960 Clostridium difficile R20291 8468649 YP_003218931.1 CDS CDR20291_2451 NC_013316.1 2873220 2875148 R transcription antiterminator complement(2873220..2875148) Clostridium difficile R20291 8468650 YP_003218932.1 CDS CDR20291_2452 NC_013316.1 2875382 2875834 D PTS system transporter subunit IIA 2875382..2875834 Clostridium difficile R20291 8468651 YP_003218933.1 CDS CDR20291_2453 NC_013316.1 2875837 2876145 D PTS system transporter subunit IIB 2875837..2876145 Clostridium difficile R20291 8468652 YP_003218934.1 CDS CDR20291_2454 NC_013316.1 2876259 2877365 D PTS system transporter subunit IIC 2876259..2877365 Clostridium difficile R20291 8468653 YP_003218935.1 CDS CDR20291_2455 NC_013316.1 2877440 2880118 D alpha-mannosidase 2877440..2880118 Clostridium difficile R20291 8468654 YP_003218936.1 CDS CDR20291_2456 NC_013316.1 2880435 2882771 R two-component sensor histidine kinase complement(2880435..2882771) Clostridium difficile R20291 8468655 YP_003218937.1 CDS CDR20291_2457 NC_013316.1 2882743 2883459 R two-component response regulator complement(2882743..2883459) Clostridium difficile R20291 8468656 YP_003218938.1 CDS CDR20291_2458 NC_013316.1 2883874 2884530 R nitroreductase complement(2883874..2884530) Clostridium difficile R20291 8468657 YP_003218939.1 CDS CDR20291_2459 NC_013316.1 2884585 2885214 R hydrolase complement(2884585..2885214) Clostridium difficile R20291 8468658 YP_003218940.1 CDS CDR20291_2460 NC_013316.1 2885345 2885986 R thiamine pyrophosphokinase complement(2885345..2885986) Clostridium difficile R20291 8468659 YP_003218941.1 CDS CDR20291_2461 NC_013316.1 2885995 2886666 R ribulose-phosphate 3-epimerase complement(2885995..2886666) Clostridium difficile R20291 8468660 YP_003218942.1 CDS CDR20291_2462 NC_013316.1 2886671 2887591 R ATP/GTP-binding protein complement(2886671..2887591) Clostridium difficile R20291 8468661 YP_003218943.1 CDS CDR20291_2463 NC_013316.1 2887653 2888390 R short chain dehydrogenase complement(2887653..2888390) Clostridium difficile R20291 8468662 YP_003218944.1 CDS stk NC_013316.1 2888498 2890513 R serine/threonine-protein kinase and phosphatase complement(2888498..2890513) Clostridium difficile R20291 8468663 YP_003218945.1 CDS stp NC_013316.1 2890530 2891282 R serine/threonine phosphatase complement(2890530..2891282) Clostridium difficile R20291 8470348 YP_003218946.1 CDS CDR20291_2466 NC_013316.1 2891302 2892333 R radical SAM protein complement(2891302..2892333) Clostridium difficile R20291 8470349 YP_003218947.1 CDS rsmB NC_013316.1 2892341 2893666 R ribosomal RNA small subunit methyltransferase complement(2892341..2893666) Clostridium difficile R20291 8468664 YP_003218948.1 CDS CDR20291_2468 NC_013316.1 2893728 2894429 R membrane-associated neutral zinc metallopeptidase complement(2893728..2894429) Clostridium difficile R20291 8470252 YP_003218949.1 CDS CDR20291_2469 NC_013316.1 2894498 2895250 R hypothetical protein complement(2894498..2895250) Clostridium difficile R20291 8468665 YP_003218950.1 CDS fmt NC_013316.1 2895260 2896189 R methionyl-tRNA formyltransferase complement(2895260..2896189) Clostridium difficile R20291 8468666 YP_003218951.1 CDS def2 NC_013316.1 2896204 2896644 R peptide deformylase 2 complement(2896204..2896644) Clostridium difficile R20291 8469768 YP_003218952.1 CDS priA NC_013316.1 2896662 2899187 R primosomal protein N' complement(2896662..2899187) Clostridium difficile R20291 8469655 YP_003218953.1 CDS coaBC NC_013316.1 2899426 2900667 R coenzyme A biosynthesis bifunctional protein complement(2899426..2900667) Clostridium difficile R20291 8470107 YP_003218954.1 CDS rpoZ NC_013316.1 2900630 2900896 R DNA-directed RNA polymerase subunit omega complement(2900630..2900896) Clostridium difficile R20291 8469600 YP_003218955.1 CDS gmk NC_013316.1 2900899 2901516 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(2900899..2901516) Clostridium difficile R20291 8470228 YP_003218956.1 CDS CDR20291_2476 NC_013316.1 2901546 2902427 R hypothetical protein complement(2901546..2902427) Clostridium difficile R20291 8469832 YP_003218957.1 CDS dapF NC_013316.1 2902431 2903261 R diaminopimelate epimerase complement(2902431..2903261) Clostridium difficile R20291 8468667 YP_003218958.1 CDS ltaE NC_013316.1 2903548 2904582 R low-specificity L-threonine aldolase complement(2903548..2904582) Clostridium difficile R20291 8469651 YP_003218959.1 CDS fbpA NC_013316.1 2904878 2906653 D fibronectin-binding protein 2904878..2906653 Clostridium difficile R20291 8469942 YP_003218960.1 CDS CDR20291_2480 NC_013316.1 2906868 2908637 R antibiotic resistance ABC transporter ATP-binding protein complement(2906868..2908637) Clostridium difficile R20291 8469718 YP_003218961.1 CDS uraA NC_013316.1 2908819 2910030 R uracil permease complement(2908819..2910030) Clostridium difficile R20291 8468668 YP_003218962.1 CDS pyrR NC_013316.1 2910314 2910847 R bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase complement(2910314..2910847) Clostridium difficile R20291 8470416 YP_003218963.1 CDS CDR20291_2483 NC_013316.1 2911206 2912117 R pseudouridylate synthase complement(2911206..2912117) Clostridium difficile R20291 8470146 YP_003218964.1 CDS lspA NC_013316.1 2912122 2912568 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(2912122..2912568) Clostridium difficile R20291 8468669 YP_003218965.1 CDS CDR20291_2485 NC_013316.1 2912878 2913657 R oligosaccharide deacetylase complement(2912878..2913657) Clostridium difficile R20291 8469941 YP_003218966.1 CDS CDR20291_2486 NC_013316.1 2913707 2914189 R general stress protein complement(2913707..2914189) Clostridium difficile R20291 8468670 YP_003218967.1 CDS CDR20291_2487 NC_013316.1 2914373 2915794 R carbon starvation protein complement(2914373..2915794) Clostridium difficile R20291 8468671 YP_003218968.1 CDS CDR20291_2488 NC_013316.1 2915940 2916710 R two-component response regulator complement(2915940..2916710) Clostridium difficile R20291 8468672 YP_003218969.1 CDS CDR20291_2489 NC_013316.1 2916715 2917917 R two-component sensor histidine kinase complement(2916715..2917917) Clostridium difficile R20291 8468673 YP_003218970.1 CDS CDR20291_2490 NC_013316.1 2918789 2919535 D response regulator 2918789..2919535 Clostridium difficile R20291 8468674 YP_003218971.1 CDS CDR20291_2491 NC_013316.1 2919925 2921316 D ADP-ribosyltransferase subunit CdtA 2919925..2921316 Clostridium difficile R20291 8468675 YP_003218972.1 CDS CDR20291_2492 NC_013316.1 2921369 2923999 D ADP-ribosyltransferase binding protein 2921369..2923999 Clostridium difficile R20291 8468676 YP_003218973.1 CDS trpS NC_013316.1 2924651 2925652 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(2924651..2925652) Clostridium difficile R20291 8468677 YP_003218974.1 CDS mtnN NC_013316.1 2925675 2926373 R 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(2925675..2926373) Clostridium difficile R20291 8470397 YP_003218975.1 CDS CDR20291_2495 NC_013316.1 2926747 2928150 R amino acid permease complement(2926747..2928150) Clostridium difficile R20291 8469993 YP_003218976.1 CDS CDR20291_2496 NC_013316.1 2928647 2929723 D peptidase 2928647..2929723 Clostridium difficile R20291 8468678 YP_003218977.1 CDS CDR20291_2497 NC_013316.1 2929826 2930668 R hypothetical protein complement(2929826..2930668) Clostridium difficile R20291 8468679 YP_003218978.1 CDS CDR20291_2498 NC_013316.1 2930852 2931424 D TetR family transcriptional regulator 2930852..2931424 Clostridium difficile R20291 8468680 YP_003218979.1 CDS CDR20291_2499 NC_013316.1 2931587 2931922 R hypothetical protein complement(2931587..2931922) Clostridium difficile R20291 8468681 YP_003218980.1 CDS CDR20291_2500 NC_013316.1 2931986 2932786 R hypothetical protein complement(2931986..2932786) Clostridium difficile R20291 8468682 YP_003218981.1 CDS CDR20291_2501 NC_013316.1 2932943 2934061 R transposase-like protein b complement(2932943..2934061) Clostridium difficile R20291 8468683 YP_003218982.1 CDS ileS NC_013316.1 2935038 2938145 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(2935038..2938145) Clostridium difficile R20291 8468684 YP_003218983.1 CDS CDR20291_2503 NC_013316.1 2938645 2939172 R cell-division initiation protein complement(2938645..2939172) Clostridium difficile R20291 8468685 YP_003218984.1 CDS CDR20291_2504 NC_013316.1 2939207 2939992 R RNA-binding cell division protein complement(2939207..2939992) Clostridium difficile R20291 8468686 YP_003218985.1 CDS CDR20291_2505 NC_013316.1 2940002 2940259 R hypothetical protein complement(2940002..2940259) Clostridium difficile R20291 8468687 YP_003218986.1 CDS CDR20291_2506 NC_013316.1 2940278 2940736 R hypothetical protein complement(2940278..2940736) Clostridium difficile R20291 8468688 YP_003218987.1 CDS CDR20291_2507 NC_013316.1 2940776 2941480 R alanine racemase complement(2940776..2941480) Clostridium difficile R20291 8468689 YP_003218988.1 CDS CDR20291_2508 NC_013316.1 2941490 2942098 R hypothetical protein complement(2941490..2942098) Clostridium difficile R20291 8468690 YP_003218989.1 CDS CDR20291_2509 NC_013316.1 2942506 2943546 D hypothetical protein 2942506..2943546 Clostridium difficile R20291 8468691 YP_003218990.1 CDS CDR20291_2510 NC_013316.1 2944009 2945373 R hypothetical protein complement(2944009..2945373) Clostridium difficile R20291 8468692 YP_003218991.1 CDS CDR20291_2511 NC_013316.1 2945390 2945659 R ACT domain-containing protein; hypothetical protein complement(2945390..2945659) Clostridium difficile R20291 8468693 YP_003218992.1 CDS CDR20291_2512 NC_013316.1 2945949 2947889 R hypothetical protein complement(2945949..2947889) Clostridium difficile R20291 8468694 YP_003218993.1 CDS spoIVA NC_013316.1 2948073 2949566 R stage IV sporulation protein A complement(2948073..2949566) Clostridium difficile R20291 8468695 YP_003218994.1 CDS CDR20291_2514 NC_013316.1 2949720 2951015 R hypothetical protein complement(2949720..2951015) Clostridium difficile R20291 8470326 YP_003218995.1 CDS CDR20291_2515 NC_013316.1 2951199 2952644 R amino acid permease family protein complement(2951199..2952644) Clostridium difficile R20291 8468696 YP_003218996.1 CDS CDR20291_2516 NC_013316.1 2952660 2953799 R cobalt dependent x-pro dipeptidase complement(2952660..2953799) Clostridium difficile R20291 8468697 YP_003218997.1 CDS CDR20291_2517 NC_013316.1 2954118 2954768 D transcriptional regulator 2954118..2954768 Clostridium difficile R20291 8468698 YP_003218998.1 CDS glyC NC_013316.1 2954925 2955944 R glycerol-3-phosphate dehydrogenase complement(2954925..2955944) Clostridium difficile R20291 8468699 YP_003218999.1 CDS CDR20291_2519 NC_013316.1 2955975 2956589 R hypothetical protein complement(2955975..2956589) Clostridium difficile R20291 8469829 YP_003219000.1 CDS engA NC_013316.1 2956624 2957949 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2956624..2957949) Clostridium difficile R20291 8468700 YP_003219001.1 CDS CDR20291_2521 NC_013316.1 2957977 2959317 R hypothetical protein complement(2957977..2959317) Clostridium difficile R20291 8468701 YP_003219002.1 CDS CDR20291_2522 NC_013316.1 2959543 2959743 R hypothetical protein complement(2959543..2959743) Clostridium difficile R20291 8468702 YP_003219003.1 CDS CDR20291_2523 NC_013316.1 2959745 2960677 R hypothetical protein complement(2959745..2960677) Clostridium difficile R20291 8468703 YP_003219004.1 CDS CDR20291_2524 NC_013316.1 2960722 2961654 R hypothetical protein complement(2960722..2961654) Clostridium difficile R20291 8468704 YP_003219005.1 CDS CDR20291_2525 NC_013316.1 2961709 2962998 R two-component sensor histidine kinase complement(2961709..2962998) Clostridium difficile R20291 8468705 YP_003219006.1 CDS CDR20291_2526 NC_013316.1 2963027 2963719 R two-component response regulator complement(2963027..2963719) Clostridium difficile R20291 8468706 YP_003219007.1 CDS CDR20291_2527 NC_013316.1 2963734 2964492 R hypothetical protein complement(2963734..2964492) Clostridium difficile R20291 8468707 YP_003219008.1 CDS CDR20291_2528 NC_013316.1 2964492 2964953 R ATP-binding protein complement(2964492..2964953) Clostridium difficile R20291 8468708 YP_003219009.1 CDS CDR20291_2529 NC_013316.1 2964975 2965238 R hypothetical protein complement(2964975..2965238) Clostridium difficile R20291 8468709 YP_003219010.1 CDS sigG NC_013316.1 2965342 2966115 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG complement(2965342..2966115) Clostridium difficile R20291 8468710 YP_003219011.1 CDS sigE NC_013316.1 2966207 2966929 R sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE complement(2966207..2966929) Clostridium difficile R20291 8470279 YP_003219012.1 CDS spoIIGA NC_013316.1 2966954 2967826 R sporulation sigma-E factor processing peptidase complement(2966954..2967826) Clostridium difficile R20291 8470277 YP_003219013.1 CDS CDR20291_2533 NC_013316.1 2968117 2969391 R extracellular solute-binding protein complement(2968117..2969391) Clostridium difficile R20291 8470312 YP_003219014.1 CDS ftsZ NC_013316.1 2969675 2970835 R cell division protein complement(2969675..2970835) Clostridium difficile R20291 8468711 YP_003219015.1 CDS sbp NC_013316.1 2971022 2971375 R hypothetical protein complement(2971022..2971375) Clostridium difficile R20291 8469782 YP_003219016.1 CDS CDR20291_2536 NC_013316.1 2971474 2972148 R hypothetical protein complement(2971474..2972148) Clostridium difficile R20291 8470261 YP_003219017.1 CDS CDR20291_2537 NC_013316.1 2972153 2972851 R hypothetical protein complement(2972153..2972851) Clostridium difficile R20291 8468712 YP_003219018.1 CDS CDR20291_2538 NC_013316.1 2972874 2973578 R cell division protein complement(2972874..2973578) Clostridium difficile R20291 8468713 YP_003219019.1 CDS murG NC_013316.1 2973884 2975110 R UDP-N-acetylglucosamine--N-acetylmuramyl-(penta peptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase complement(2973884..2975110) Clostridium difficile R20291 8468714 YP_003219020.1 CDS ftsW NC_013316.1 2975128 2976258 R cell division/stage V sporulation protein complement(2975128..2976258) Clostridium difficile R20291 8470000 YP_003219021.1 CDS murD NC_013316.1 2976310 2977665 R UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(2976310..2977665) Clostridium difficile R20291 8469780 YP_003219022.1 CDS mraY NC_013316.1 2977684 2978652 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2977684..2978652) Clostridium difficile R20291 8469997 YP_003219023.1 CDS murF NC_013316.1 2978693 2980066 R UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase complement(2978693..2980066) Clostridium difficile R20291 8469983 YP_003219024.1 CDS spoVD NC_013316.1 2980233 2982212 R stage V sporulation protein Din) complement(2980233..2982212) Clostridium difficile R20291 8469999 YP_003219025.1 CDS CDR20291_2545 NC_013316.1 2982224 2982571 R hypothetical protein complement(2982224..2982571) Clostridium difficile R20291 8470331 YP_003219026.1 CDS mraW NC_013316.1 2983057 2983992 R S-adenosyl-methyltransferase MraW complement(2983057..2983992) Clostridium difficile R20291 8468715 YP_003219027.1 CDS lgt NC_013316.1 2984022 2984768 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(2984022..2984768) Clostridium difficile R20291 8469982 YP_003219028.1 CDS CDR20291_2548 NC_013316.1 2985165 2986466 R peptidase complement(2985165..2986466) Clostridium difficile R20291 8469936 YP_003219029.1 CDS CDR20291_2549 NC_013316.1 2986466 2987731 R peptidase complement(2986466..2987731) Clostridium difficile R20291 8468716 YP_003219030.1 CDS CDR20291_2550 NC_013316.1 2988047 2989144 D GTP-binding protein 2988047..2989144 Clostridium difficile R20291 8468717 YP_003219031.1 CDS CDR20291_2551 NC_013316.1 2989623 2991902 R signaling protein complement(2989623..2991902) Clostridium difficile R20291 8468718 YP_003219032.1 CDS murE NC_013316.1 2992173 2993627 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2992173..2993627) Clostridium difficile R20291 8468719 YP_003219033.1 CDS CDR20291_2553 NC_013316.1 2993722 2994660 D AraC family transcriptional regulator 2993722..2994660 Clostridium difficile R20291 8469998 YP_003219034.1 CDS crr NC_013316.1 2994874 2995365 R PTS system glucose-specific transporter subunit IIA complement(2994874..2995365) Clostridium difficile R20291 8468720 YP_003219035.1 CDS licT NC_013316.1 2997249 2998130 R transcription antiterminator complement(2997249..2998130) Clostridium difficile R20291 8470117 YP_003219036.1 CDS CDR20291_2557 NC_013316.1 2998338 2998832 R Na(+)/H(+) antiporter complement(2998338..2998832) Clostridium difficile R20291 8469938 YP_003219037.1 CDS appF NC_013316.1 2998984 2999955 R oligopeptide ABC transporter ATP-binding protein complement(2998984..2999955) Clostridium difficile R20291 8468721 YP_003219038.1 CDS appD NC_013316.1 2999956 3000933 R oligopeptide transporter, ATP-binding protein complement(2999956..3000933) Clostridium difficile R20291 8469494 YP_003219039.1 CDS appA NC_013316.1 3001116 3002711 D oligopeptide ABC transporter substrate-binding protein 3001116..3002711 Clostridium difficile R20291 8469493 YP_003219040.1 CDS appB NC_013316.1 3002817 3003776 D oligopeptide ABC transporter permease 3002817..3003776 Clostridium difficile R20291 8469490 YP_003219041.1 CDS appC NC_013316.1 3003779 3004591 D oligopeptide ABC transporter permease 3003779..3004591 Clostridium difficile R20291 8469491 YP_003219042.1 CDS CDR20291_2563 NC_013316.1 3004806 3005708 R LysR family transcriptional regulator complement(3004806..3005708) Clostridium difficile R20291 8469492 YP_003219043.1 CDS thlA2 NC_013316.1 3006063 3007241 D acetyl-CoA acetyltransferase 3006063..3007241 Clostridium difficile R20291 8468722 YP_003219044.1 CDS ctfA NC_013316.1 3007250 3007906 D butyrate--acetoacetate CoA-transferase subunit A 3007250..3007906 Clostridium difficile R20291 8470374 YP_003219045.1 CDS ctfB NC_013316.1 3007906 3008571 D butyrate--acetoacetate CoA-transferase subunit B 3007906..3008571 Clostridium difficile R20291 8469628 YP_003219046.1 CDS bdhA NC_013316.1 3008670 3009452 D catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 3008670..3009452 Clostridium difficile R20291 8469629 YP_003219047.1 CDS CDR20291_2568 NC_013316.1 3009514 3010848 D permease 3009514..3010848 Clostridium difficile R20291 8469541 YP_003219048.1 CDS CDR20291_2569 NC_013316.1 3011345 3012271 D Calcium-chelating exported protein 3011345..3012271 Clostridium difficile R20291 8468723 YP_003219049.1 CDS nifJ NC_013316.1 3012663 3016202 R pyruvate-flavodoxin oxidoreductase complement(3012663..3016202) Clostridium difficile R20291 8468724 YP_003219050.1 CDS CDR20291_2571 NC_013316.1 3016720 3017289 R propanediol utilization protein complement(3016720..3017289) Clostridium difficile R20291 8470014 YP_003219051.1 CDS CDR20291_2572 NC_013316.1 3017361 3017969 R iron-sulfur flavoprotein complement(3017361..3017969) Clostridium difficile R20291 8468725 YP_003219052.1 CDS CDR20291_2573 NC_013316.1 3017977 3019740 R regulatory protein complement(3017977..3019740) Clostridium difficile R20291 8468726 YP_003219053.1 CDS CDR20291_2574 NC_013316.1 3019783 3020250 R hypothetical protein complement(3019783..3020250) Clostridium difficile R20291 8468727 YP_003219054.1 CDS CDR20291_2575 NC_013316.1 3020433 3020894 D hypothetical protein 3020433..3020894 Clostridium difficile R20291 8468728 YP_003219055.1 CDS sspA NC_013316.1 3021346 3021567 R small acid-soluble spore protein A complement(3021346..3021567) Clostridium difficile R20291 8468729 YP_003219056.1 CDS CDR20291_2577 NC_013316.1 3021651 3022838 R lipoprotein complement(3021651..3022838) Clostridium difficile R20291 8470343 YP_003219057.1 CDS CDR20291_2578 NC_013316.1 3022939 3023871 R membrane-associated phosphatase complement(3022939..3023871) Clostridium difficile R20291 8468730 YP_003219058.1 CDS hpt NC_013316.1 3023960 3024487 R phosphoribosyltransferase complement(3023960..3024487) Clostridium difficile R20291 8468731 YP_003219059.1 CDS CDR20291_2580 NC_013316.1 3024638 3025792 D aminotransferase 3024638..3025792 Clostridium difficile R20291 8469885 YP_003219060.1 CDS CDR20291_2581 NC_013316.1 3025879 3027123 R sodium:dicarboxylate symporter complement(3025879..3027123) Clostridium difficile R20291 8468732 YP_003219061.1 CDS CDR20291_2582 NC_013316.1 3027248 3027637 R hypothetical protein complement(3027248..3027637) Clostridium difficile R20291 8468733 YP_003219062.1 CDS asnA NC_013316.1 3027741 3028742 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(3027741..3028742) Clostridium difficile R20291 8468734 YP_003219063.1 CDS CDR20291_2584 NC_013316.1 3029190 3030380 R aminotransferase complement(3029190..3030380) Clostridium difficile R20291 8469515 YP_003219064.1 CDS CDR20291_2585 NC_013316.1 3030661 3031782 R amidohydrolase complement(3030661..3031782) Clostridium difficile R20291 8468735 YP_003219065.1 CDS CDR20291_2586 NC_013316.1 3031843 3032328 R hypothetical protein complement(3031843..3032328) Clostridium difficile R20291 8468736 YP_003219066.1 CDS CDR20291_2587 NC_013316.1 3032330 3032998 R hypothetical protein complement(3032330..3032998) Clostridium difficile R20291 8468737 YP_003219067.1 CDS CDR20291_2588 NC_013316.1 3033388 3035412 D sigma54-interacting regulatory protein 3033388..3035412 Clostridium difficile R20291 8468738 YP_003219068.1 CDS CDR20291_2589 NC_013316.1 3035642 3036829 R lipoprotein complement(3035642..3036829) Clostridium difficile R20291 8468739 YP_003219069.1 CDS brnQ NC_013316.1 3037031 3038302 R branched-chain amino acid transport system carrier protein complement(3037031..3038302) Clostridium difficile R20291 8468740 YP_003219070.1 CDS CDR20291_2591 NC_013316.1 3038443 3039096 R hypothetical protein complement(3038443..3039096) Clostridium difficile R20291 8469557 YP_003219071.1 CDS CDR20291_2592 NC_013316.1 3039600 3040943 D permease 3039600..3040943 Clostridium difficile R20291 8468741 YP_003219072.1 CDS CDR20291_2593 NC_013316.1 3041090 3042454 D amidohydrolase 3041090..3042454 Clostridium difficile R20291 8468742 YP_003219073.1 CDS CDR20291_2594 NC_013316.1 3042632 3044497 R hypothetical protein complement(3042632..3044497) Clostridium difficile R20291 8468743 YP_003219074.1 CDS CDR20291_2595 NC_013316.1 3044733 3045950 R transport protein complement(3044733..3045950) Clostridium difficile R20291 8468744 YP_003219075.1 CDS ydiB NC_013316.1 3046150 3047013 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(3046150..3047013) Clostridium difficile R20291 8468745 YP_003219076.1 CDS CDR20291_2597 NC_013316.1 3047095 3049017 R NADH-dependent flavin oxidoreductase complement(3047095..3049017) Clostridium difficile R20291 8470444 YP_003219077.1 CDS CDR20291_2598 NC_013316.1 3049096 3049944 R hypothetical protein complement(3049096..3049944) Clostridium difficile R20291 8468746 YP_003219078.1 CDS CDR20291_2599 NC_013316.1 3050357 3051238 D LysR family transcriptional regulator 3050357..3051238 Clostridium difficile R20291 8468747 YP_003219079.1 CDS CDR20291_2600 NC_013316.1 3051446 3052309 R hypothetical protein complement(3051446..3052309) Clostridium difficile R20291 8468748 YP_003219080.1 CDS CDR20291_2601 NC_013316.1 3052464 3054425 R cell surface protein complement(3052464..3054425) Clostridium difficile R20291 8468749 YP_003219081.1 CDS galE NC_013316.1 3054510 3055523 R UDP-glucose 4-epimerase complement(3054510..3055523) Clostridium difficile R20291 8468750 YP_003219082.1 CDS gtaB NC_013316.1 3055548 3056492 R UTP--glucose-1-phosphate uridylyltransferase complement(3055548..3056492) Clostridium difficile R20291 8469788 YP_003219083.1 CDS CDR20291_2604 NC_013316.1 3056615 3056935 R hypothetical protein complement(3056615..3056935) Clostridium difficile R20291 8469847 YP_003219084.1 CDS CDR20291_2605 NC_013316.1 3056925 3058916 R hypothetical protein complement(3056925..3058916) Clostridium difficile R20291 8468751 YP_003219085.1 CDS CDR20291_2606 NC_013316.1 3059038 3061581 R surface protein complement(3059038..3061581) Clostridium difficile R20291 8468752 YP_003219086.1 CDS CDR20291_2607 NC_013316.1 3062325 3063002 D sortase B 3062325..3063002 Clostridium difficile R20291 8468753 YP_003219087.1 CDS CDR20291_2608 NC_013316.1 3068261 3069199 D polysaccharide deacetylase 3068261..3069199 Clostridium difficile R20291 8469430 YP_003219088.1 CDS CDR20291_2609 NC_013316.1 3069572 3070945 R hypothetical protein complement(3069572..3070945) Clostridium difficile R20291 8468755 YP_003219089.1 CDS CDR20291_2610 NC_013316.1 3071132 3072454 R two-component sensor histidine kinase complement(3071132..3072454) Clostridium difficile R20291 8468756 YP_003219090.1 CDS CDR20291_2611 NC_013316.1 3072447 3073151 R two-component response regulator complement(3072447..3073151) Clostridium difficile R20291 8468757 YP_003219091.1 CDS CDR20291_2612 NC_013316.1 3073334 3074398 R hypothetical protein complement(3073334..3074398) Clostridium difficile R20291 8468758 YP_003219092.1 CDS CDR20291_2613 NC_013316.1 3074401 3075099 R polysaccharide deacetylase complement(3074401..3075099) Clostridium difficile R20291 8468759 YP_003219093.1 CDS CDR20291_2614 NC_013316.1 3075090 3076187 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase complement(3075090..3076187) Clostridium difficile R20291 8468760 YP_003219094.1 CDS glyA NC_013316.1 3076510 3077754 R serine hydroxymethyltransferase complement(3076510..3077754) Clostridium difficile R20291 8468761 YP_003219095.1 CDS CDR20291_2616 NC_013316.1 3078083 3078871 D hypothetical protein 3078083..3078871 Clostridium difficile R20291 8469827 YP_003219096.1 CDS CDR20291_2617 NC_013316.1 3078871 3079344 D hypothetical protein 3078871..3079344 Clostridium difficile R20291 8468762 YP_003219097.1 CDS CDR20291_2618 NC_013316.1 3079436 3079876 R regulator of the sigma(E) factor complement(3079436..3079876) Clostridium difficile R20291 8468763 YP_003219098.1 CDS CDR20291_2619 NC_013316.1 3079891 3080184 R hypothetical protein complement(3079891..3080184) Clostridium difficile R20291 8468764 YP_003219099.1 CDS CDR20291_2620 NC_013316.1 3080227 3080628 R hypothetical protein complement(3080227..3080628) Clostridium difficile R20291 8468765 YP_003219100.1 CDS CDR20291_2621 NC_013316.1 3080861 3082981 D sigma-54-interacting regulatory protein 3080861..3082981 Clostridium difficile R20291 8468766 YP_003219101.1 CDS CDR20291_2622 NC_013316.1 3083119 3084372 D aminotransferase 3083119..3084372 Clostridium difficile R20291 8468767 YP_003219102.1 CDS mleN NC_013316.1 3084397 3085839 D malate-2H(+)/Na(+)-lactate antiporter 3084397..3085839 Clostridium difficile R20291 8468768 YP_003219103.1 CDS CDR20291_2624 NC_013316.1 3086187 3087692 R cell surface protein complement(3086187..3087692) Clostridium difficile R20291 8469969 YP_003219104.1 CDS CDR20291_2625 NC_013316.1 3087985 3088854 D LysR family transcriptional regulator 3087985..3088854 Clostridium difficile R20291 8468769 YP_003219105.1 CDS CDR20291_2626 NC_013316.1 3088966 3089772 R carbon-nitrogen hydrolase complement(3088966..3089772) Clostridium difficile R20291 8468770 YP_003219106.1 CDS CDR20291_2627 NC_013316.1 3089786 3091018 R cytosine permease complement(3089786..3091018) Clostridium difficile R20291 8468771 YP_003219107.1 CDS aspS NC_013316.1 3091477 3093264 R aspartyl-tRNA synthetase complement(3091477..3093264) Clostridium difficile R20291 8468772 YP_003219108.1 CDS hisS NC_013316.1 3093338 3094600 R histidyl-tRNA synthetase complement(3093338..3094600) Clostridium difficile R20291 8469521 YP_003219109.1 CDS CDR20291_2630 NC_013316.1 3094590 3096146 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(3094590..3096146) Clostridium difficile R20291 8469877 YP_003219110.1 CDS CDR20291_2631 NC_013316.1 3096237 3096851 R hydrolase complement(3096237..3096851) Clostridium difficile R20291 8468773 YP_003219111.1 CDS dtd NC_013316.1 3096866 3097315 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(3096866..3097315) Clostridium difficile R20291 8468774 YP_003219112.1 CDS relA NC_013316.1 3097340 3099547 R GTP pyrophosphokinase complement(3097340..3099547) Clostridium difficile R20291 8469682 YP_003219113.1 CDS apt NC_013316.1 3099621 3100133 R adenine phosphoribosyltransferase complement(3099621..3100133) Clostridium difficile R20291 8470167 YP_003219114.1 CDS recJ NC_013316.1 3100146 3102596 R single-stranded-DNA-specific exonuclease complement(3100146..3102596) Clostridium difficile R20291 8469495 YP_003219115.1 CDS ubiB NC_013316.1 3102609 3104273 R ubiquinone biosynthesis protein complement(3102609..3104273) Clostridium difficile R20291 8470163 YP_003219116.1 CDS CDR20291_2637 NC_013316.1 3104571 3105068 R transferase complement(3104571..3105068) Clostridium difficile R20291 8470411 YP_003219117.1 CDS CDR20291_2638 NC_013316.1 3105097 3106476 R radical SAM protein complement(3105097..3106476) Clostridium difficile R20291 8468775 YP_003219118.1 CDS agrD NC_013316.1 3106781 3106927 R autoinducer prepeptide complement(3106781..3106927) Clostridium difficile R20291 8468776 YP_003219119.1 CDS agrB NC_013316.1 3106957 3107535 R accessory gene regulator complement(3106957..3107535) Clostridium difficile R20291 8469486 YP_003219120.1 CDS CDR20291_2641 NC_013316.1 3107903 3109333 R hypothetical protein complement(3107903..3109333) Clostridium difficile R20291 8469485 YP_003219121.1 CDS CDR20291_2642 NC_013316.1 3109677 3110342 D hypothetical protein 3109677..3110342 Clostridium difficile R20291 8468777 YP_003219122.1 CDS ptsI NC_013316.1 3111134 3112846 R phosphoenolpyruvate-protein phosphotransferase complement(3111134..3112846) Clostridium difficile R20291 8468778 YP_003219123.1 CDS ptsH NC_013316.1 3113199 3113459 R PTS system, phosphocarrier protein complement(3113199..3113459) Clostridium difficile R20291 8470119 YP_003219124.1 CDS CDR20291_2645 NC_013316.1 3113651 3114862 R phospholipase complement(3113651..3114862) Clostridium difficile R20291 8470118 YP_003219125.1 CDS CDR20291_2646 NC_013316.1 3115094 3116827 R DNA modification methylase complement(3115094..3116827) Clostridium difficile R20291 8468779 YP_003219126.1 CDS CDR20291_2647 NC_013316.1 3116867 3117265 R hypothetical protein complement(3116867..3117265) Clostridium difficile R20291 8468780 YP_003219127.1 CDS CDR20291_2648 NC_013316.1 3117268 3118815 R signaling protein complement(3117268..3118815) Clostridium difficile R20291 8468781 YP_003219128.1 CDS CDR20291_2649 NC_013316.1 3119130 3120035 R N-acetylmuramoyl-L-alanine amidase complement(3119130..3120035) Clostridium difficile R20291 8468782 YP_003219129.1 CDS uppS NC_013316.1 3120078 3120722 R UDP pyrophosphate synthetase complement(3120078..3120722) Clostridium difficile R20291 8468783 YP_003219130.1 CDS CDR20291_2651 NC_013316.1 3120861 3121331 D lipoprotein 3120861..3121331 Clostridium difficile R20291 8470415 YP_003219131.1 CDS CDR20291_2652 NC_013316.1 3121454 3122242 R hydrolase complement(3121454..3122242) Clostridium difficile R20291 8468784 YP_003219132.1 CDS CDR20291_2653 NC_013316.1 3122610 3123566 D penicillin-binding protein repressor 3122610..3123566 Clostridium difficile R20291 8468785 YP_003219133.1 CDS CDR20291_2654 NC_013316.1 3123851 3124816 D penicillin-binding protein repressor 3123851..3124816 Clostridium difficile R20291 8468786 YP_003219134.1 CDS CDR20291_2655 NC_013316.1 3125014 3127125 R cell surface protein complement(3125014..3127125) Clostridium difficile R20291 8468787 YP_003219135.1 CDS CDR20291_2656 NC_013316.1 3127427 3128134 R cell-wall hydrolase complement(3127427..3128134) Clostridium difficile R20291 8468788 YP_003219136.1 CDS CDR20291_2657 NC_013316.1 3128333 3130246 R capsular polysaccharide biosynthesis protein complement(3128333..3130246) Clostridium difficile R20291 8468789 YP_003219137.1 CDS CDR20291_2658 NC_013316.1 3130330 3131421 R capsular polysaccharide biosynthesis glycosyl transferase complement(3130330..3131421) Clostridium difficile R20291 8468790 YP_003219138.1 CDS rkpK NC_013316.1 3131427 3132770 R UDP-glucose 6-dehydrogenase complement(3131427..3132770) Clostridium difficile R20291 8468791 YP_003219139.1 CDS tuaG NC_013316.1 3132748 3133500 R teichuronic acid biosynthesis glycosyl transferase complement(3132748..3133500) Clostridium difficile R20291 8470176 YP_003219140.1 CDS CDR20291_2661 NC_013316.1 3133548 3134456 R beta-glycosyltransferase complement(3133548..3134456) Clostridium difficile R20291 8470406 YP_003219141.1 CDS CDR20291_2662 NC_013316.1 3134478 3135227 R teichuronic acid biosynthesis glycosyl transferase complement(3134478..3135227) Clostridium difficile R20291 8468792 YP_003219142.1 CDS CDR20291_2663 NC_013316.1 3135256 3136446 R minor teichoic acid biosynthesis protein complement(3135256..3136446) Clostridium difficile R20291 8468793 YP_003219143.1 CDS CDR20291_2664 NC_013316.1 3136446 3137285 R glycosyl transferase complement(3136446..3137285) Clostridium difficile R20291 8468794 YP_003219144.1 CDS CDR20291_2665 NC_013316.1 3137288 3138445 R polysaccharide polymerase complement(3137288..3138445) Clostridium difficile R20291 8468795 YP_003219145.1 CDS CDR20291_2666 NC_013316.1 3138461 3139183 R polysaccharide biosynthesis protein complement(3138461..3139183) Clostridium difficile R20291 8468796 YP_003219146.1 CDS manC NC_013316.1 3139195 3140268 R mannose-1-phosphate guanylyltransferase complement(3139195..3140268) Clostridium difficile R20291 8468797 YP_003219147.1 CDS pgm2 NC_013316.1 3140290 3141996 R phosphomannomutase/phosphoglycerate mutase complement(3140290..3141996) Clostridium difficile R20291 8469953 YP_003219148.1 CDS mviN NC_013316.1 3142038 3143597 R transmembrane virulence factor MviN family protein complement(3142038..3143597) Clostridium difficile R20291 8470071 YP_003219149.1 CDS CDR20291_2670 NC_013316.1 3143712 3144767 R cell surface protein complement(3143712..3144767) Clostridium difficile R20291 8470004 YP_003219150.1 CDS CDR20291_2671 NC_013316.1 3144862 3145560 R glycosyltransferase complement(3144862..3145560) Clostridium difficile R20291 8468798 YP_003219151.1 CDS CDR20291_2672 NC_013316.1 3145768 3147795 R cell surface protein complement(3145768..3147795) Clostridium difficile R20291 8468799 YP_003219152.1 CDS CDR20291_2673 NC_013316.1 3148046 3149104 R hypothetical protein complement(3148046..3149104) Clostridium difficile R20291 8468800 YP_003219153.1 CDS CDR20291_2674 NC_013316.1 3149103 3149603 D hypothetical protein 3149103..3149603 Clostridium difficile R20291 8468801 YP_003219154.1 CDS CDR20291_2675 NC_013316.1 3149667 3151244 R cell surface protein complement(3149667..3151244) Clostridium difficile R20291 8468802 YP_003219155.1 CDS cwp84 NC_013316.1 3151541 3153952 R cell surface-associated cysteine protease complement(3151541..3153952) Clostridium difficile R20291 8468803 YP_003219156.1 CDS CDR20291_2677 NC_013316.1 3154179 3154574 D cell wall teichoic acid glycosylation protein 3154179..3154574 Clostridium difficile R20291 8469634 YP_003219157.1 CDS cwp66 NC_013316.1 3154622 3156457 R cell surface protein complement(3154622..3156457) Clostridium difficile R20291 8468804 YP_003219158.1 CDS CDR20291_2679 NC_013316.1 3156490 3157197 R hypothetical protein complement(3156490..3157197) Clostridium difficile R20291 8469633 YP_003219159.1 CDS CDR20291_2680 NC_013316.1 3157304 3159175 R S-layer protein complement(3157304..3159175) Clostridium difficile R20291 8468805 YP_003219160.1 CDS secA2 NC_013316.1 3159590 3161935 R preprotein translocase SecA subunit complement(3159590..3161935) Clostridium difficile R20291 8468806 YP_003219161.1 CDS slpA NC_013316.1 3162172 3164448 R S-layer precursor protein complement(3162172..3164448) Clostridium difficile R20291 8470268 YP_003219162.1 CDS CDR20291_2683 NC_013316.1 3164674 3166263 R surface protein complement(3164674..3166263) Clostridium difficile R20291 8470287 YP_003219163.1 CDS CDR20291_2684 NC_013316.1 3166482 3168083 R cell surface protein complement(3166482..3168083) Clostridium difficile R20291 8468807 YP_003219164.1 CDS CDR20291_2685 NC_013316.1 3168450 3170330 R cell surface protein complement(3168450..3170330) Clostridium difficile R20291 8468808 YP_003219165.1 CDS CDR20291_2686 NC_013316.1 3170540 3176503 R hypothetical protein complement(3170540..3176503) Clostridium difficile R20291 8468809 YP_003219166.1 CDS CDR20291_2687 NC_013316.1 3176884 3178317 R cell surface protein complement(3176884..3178317) Clostridium difficile R20291 8468810 YP_003219167.1 CDS CDR20291_2688 NC_013316.1 3178749 3180644 R cell surface protein complement(3178749..3180644) Clostridium difficile R20291 8468811 YP_003219168.1 CDS CDR20291_2689 NC_013316.1 3181479 3181859 R hypothetical protein complement(3181479..3181859) Clostridium difficile R20291 8468812 YP_003219169.1 CDS CDR20291_2690 NC_013316.1 3181899 3182192 R protein translocase subunit complement(3181899..3182192) Clostridium difficile R20291 8468813 YP_003219170.1 CDS tgt NC_013316.1 3182326 3183465 R queuine tRNA-ribosyltransferase complement(3182326..3183465) Clostridium difficile R20291 8468814 YP_003219171.1 CDS CDR20291_2692 NC_013316.1 3183526 3184011 R hypothetical protein complement(3183526..3184011) Clostridium difficile R20291 8470362 YP_003219172.1 CDS queA NC_013316.1 3184023 3185048 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(3184023..3185048) Clostridium difficile R20291 8468815 YP_003219173.1 CDS ruvB NC_013316.1 3185366 3186385 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(3185366..3186385) Clostridium difficile R20291 8470147 YP_003219174.1 CDS ruvA NC_013316.1 3186492 3187094 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(3186492..3187094) Clostridium difficile R20291 8470254 YP_003219175.1 CDS ruvC NC_013316.1 3187087 3187596 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(3187087..3187596) Clostridium difficile R20291 8470253 YP_003219176.1 CDS CDR20291_2697 NC_013316.1 3187908 3188537 R hypothetical protein complement(3187908..3188537) Clostridium difficile R20291 8470255 YP_003219177.1 CDS CDR20291_2698 NC_013316.1 3188740 3189063 D hypothetical protein 3188740..3189063 Clostridium difficile R20291 8468816 YP_003219178.1 CDS CDR20291_2699 NC_013316.1 3189331 3190185 D hypothetical protein 3189331..3190185 Clostridium difficile R20291 8468817 YP_003219179.1 CDS CDR20291_2700 NC_013316.1 3190371 3191807 R hypothetical protein complement(3190371..3191807) Clostridium difficile R20291 8468818 YP_003219180.1 CDS CDR20291_2701 NC_013316.1 3191878 3193260 R gluconate permease complement(3191878..3193260) Clostridium difficile R20291 8468819 YP_003219181.1 CDS garR NC_013316.1 3193396 3194301 R catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase complement(3193396..3194301) Clostridium difficile R20291 8468820 YP_003219182.1 CDS CDR20291_2703 NC_013316.1 3194697 3195362 D GntR family transcriptional regulator 3194697..3195362 Clostridium difficile R20291 8469793 YP_003219183.1 CDS CDR20291_2704 NC_013316.1 3195470 3196018 D hypothetical protein 3195470..3196018 Clostridium difficile R20291 8468821 YP_003219184.1 CDS CDR20291_2705 NC_013316.1 3196280 3196588 D hypothetical protein 3196280..3196588 Clostridium difficile R20291 8468822 YP_003219185.1 CDS CDR20291_2706 NC_013316.1 3196750 3198540 R ABC transporter ATP-binding protein/permease complement(3196750..3198540) Clostridium difficile R20291 8468823 YP_003219186.1 CDS CDR20291_2707 NC_013316.1 3198540 3200306 R ABC transporter ATP-binding protein/permease complement(3198540..3200306) Clostridium difficile R20291 8468824 YP_003219187.1 CDS CDR20291_2708 NC_013316.1 3201365 3202477 D amino acid racemase 3201365..3202477 Clostridium difficile R20291 8468825 YP_003219188.1 CDS CDR20291_2709 NC_013316.1 3202660 3203487 R transposase complement(3202660..3203487) Clostridium difficile R20291 8468826 YP_003219189.1 CDS CDR20291_2710 NC_013316.1 3204148 3204657 R hypothetical protein complement(3204148..3204657) Clostridium difficile R20291 8468827 YP_003219190.1 CDS CDR20291_2711 NC_013316.1 3204659 3205306 R hypothetical protein complement(3204659..3205306) Clostridium difficile R20291 8468828 YP_003219191.1 CDS CDR20291_2712 NC_013316.1 3205320 3206492 R peptidase complement(3205320..3206492) Clostridium difficile R20291 8468829 YP_003219192.1 CDS CDR20291_2713 NC_013316.1 3206760 3208136 D hypothetical protein 3206760..3208136 Clostridium difficile R20291 8468830 YP_003219193.1 CDS CDR20291_2714 NC_013316.1 3208387 3209220 R hypothetical protein complement(3208387..3209220) Clostridium difficile R20291 8468831 YP_003219194.1 CDS CDR20291_2715 NC_013316.1 3209549 3211963 R flavodoxin complement(join(3209549..3209968,3211847..3211963)) Clostridium difficile R20291 8468832 YP_003219195.1 CDS tlpB NC_013316.1 3210080 3211198 R transposase-like protein B complement(3210080..3211198) Clostridium difficile R20291 8468833 YP_003219196.1 CDS CDR20291_2717 NC_013316.1 3212051 3213145 R oxidoreductase (FAD-binding domain) complement(3212051..3213145) Clostridium difficile R20291 8470387 YP_003219197.1 CDS CDR20291_2718 NC_013316.1 3213147 3213593 R MarR family regulatory protein complement(3213147..3213593) Clostridium difficile R20291 8468834 YP_003219198.1 CDS CDR20291_2719 NC_013316.1 3213899 3215089 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 3213899..3215089 Clostridium difficile R20291 8468835 YP_003219199.1 CDS CDR20291_2720 NC_013316.1 3215208 3216221 D hypothetical protein 3215208..3216221 Clostridium difficile R20291 8468836 YP_003219200.1 CDS CDR20291_2721 NC_013316.1 3216339 3217001 R hypothetical protein complement(3216339..3217001) Clostridium difficile R20291 8468837 YP_003219201.1 CDS CDR20291_2722 NC_013316.1 3217372 3220326 R collagen-binding protein complement(3217372..3220326) Clostridium difficile R20291 8468838 YP_003219202.1 CDS CDR20291_2723 NC_013316.1 3220650 3221828 R cation efflux protein complement(3220650..3221828) Clostridium difficile R20291 8468839 YP_003219203.1 CDS CDR20291_2724 NC_013316.1 3222450 3225224 R transport-related ATPase complement(3222450..3225224) Clostridium difficile R20291 8468840 YP_003219204.1 CDS glyA NC_013316.1 3225396 3226652 R serine hydroxymethyltransferase complement(3225396..3226652) Clostridium difficile R20291 8468841 YP_003219205.1 CDS abgT NC_013316.1 3226724 3228226 R aminobenzoyl-glutamate transport protein complement(3226724..3228226) Clostridium difficile R20291 8469828 YP_003219206.1 CDS CDR20291_2727 NC_013316.1 3228317 3229507 R peptidase complement(3228317..3229507) Clostridium difficile R20291 8469456 YP_003219207.1 CDS CDR20291_2728 NC_013316.1 3229746 3230834 R hypothetical protein complement(3229746..3230834) Clostridium difficile R20291 8468842 YP_003219208.1 CDS CDR20291_2729 NC_013316.1 3231119 3231817 R two-component response regulator complement(3231119..3231817) Clostridium difficile R20291 8468843 YP_003219209.1 CDS CDR20291_2730 NC_013316.1 3231931 3233436 R two-component sensor histidine kinase complement(3231931..3233436) Clostridium difficile R20291 8468844 YP_003219210.1 CDS serS2 NC_013316.1 3233804 3235075 R seryl-tRNA synthetase complement(3233804..3235075) Clostridium difficile R20291 8468845 YP_003219211.1 CDS CDR20291_2732 NC_013316.1 3235892 3237496 R amidohydrolase complement(3235892..3237496) Clostridium difficile R20291 8470275 YP_003219212.1 CDS CDR20291_2733 NC_013316.1 3237882 3238808 D nitrilase 3237882..3238808 Clostridium difficile R20291 8468846 YP_003219213.1 CDS CDR20291_2734 NC_013316.1 3238928 3239926 R zinc-binding dehydrogenase complement(3238928..3239926) Clostridium difficile R20291 8468847 YP_003219214.1 CDS CDR20291_2735 NC_013316.1 3240030 3240467 D MarR family transcriptional regulator 3240030..3240467 Clostridium difficile R20291 8468848 YP_003219215.1 CDS rbr NC_013316.1 3240553 3241140 D rubrerythrin 3240553..3241140 Clostridium difficile R20291 8468849 YP_003219216.1 CDS CDR20291_2737 NC_013316.1 3241440 3242060 R hypothetical protein complement(3241440..3242060) Clostridium difficile R20291 8470154 YP_003219217.1 CDS CDR20291_2738 NC_013316.1 3242068 3242835 R hypothetical protein complement(3242068..3242835) Clostridium difficile R20291 8468850 YP_003219218.1 CDS CDR20291_2739 NC_013316.1 3242876 3243697 R hypothetical protein complement(3242876..3243697) Clostridium difficile R20291 8468851 YP_003219219.1 CDS CDR20291_2740 NC_013316.1 3244054 3245979 R bifunctional phosphonoacetaldehyde phosphonohydrolase/2-aminoethylphosphonate:pyruvate aminotransferase complement(3244054..3245979) Clostridium difficile R20291 8468852 YP_003219220.1 CDS CDR20291_2741 NC_013316.1 3246243 3247028 R DeoR family transcriptional regulator complement(3246243..3247028) Clostridium difficile R20291 8468853 YP_003219221.1 CDS dltC NC_013316.1 3247245 3247475 R D-alanine--poly(phosphoribitol) ligase subunit 2 complement(3247245..3247475) Clostridium difficile R20291 8468854 YP_003219222.1 CDS dltB NC_013316.1 3247494 3248642 R D-alanyl transferase complement(3247494..3248642) Clostridium difficile R20291 8469668 YP_003219223.1 CDS dltA NC_013316.1 3248642 3250156 R D-alanine--poly(phosphoribitol) ligase subunit 1 complement(3248642..3250156) Clostridium difficile R20291 8469667 YP_003219224.1 CDS dltD NC_013316.1 3250277 3251467 R D-alanine transferase complement(3250277..3251467) Clostridium difficile R20291 8469666 YP_003219225.1 CDS CDR20291_2746 NC_013316.1 3251756 3252775 R oxidoreductase complement(3251756..3252775) Clostridium difficile R20291 8469669 YP_003219226.1 CDS CDR20291_2747 NC_013316.1 3252951 3253535 R hypothetical protein complement(3252951..3253535) Clostridium difficile R20291 8468855 YP_003219227.1 CDS CDR20291_2748 NC_013316.1 3253591 3254271 R hydrolase complement(3253591..3254271) Clostridium difficile R20291 8468856 YP_003219228.1 CDS CDR20291_2749 NC_013316.1 3254300 3255589 R transporter complement(3254300..3255589) Clostridium difficile R20291 8468857 YP_003219229.1 CDS CDR20291_2750 NC_013316.1 3256052 3257653 R D-aminoacylase complement(3256052..3257653) Clostridium difficile R20291 8468858 YP_003219230.1 CDS CDR20291_2751 NC_013316.1 3257764 3258441 R hypothetical protein complement(3257764..3258441) Clostridium difficile R20291 8468859 YP_003219231.1 CDS CDR20291_2752 NC_013316.1 3258454 3259149 R hypothetical protein complement(3258454..3259149) Clostridium difficile R20291 8468860 YP_003219232.1 CDS CDR20291_2753 NC_013316.1 3259201 3260400 R dipeptidase complement(3259201..3260400) Clostridium difficile R20291 8468861 YP_003219233.1 CDS CDR20291_2754 NC_013316.1 3260661 3262706 R sigma-54-dependent transcriptional regulator complement(3260661..3262706) Clostridium difficile R20291 8468862 YP_003219234.1 CDS CDR20291_2755 NC_013316.1 3263117 3263926 R esterase/halogenase complement(3263117..3263926) Clostridium difficile R20291 8468863 YP_003219235.1 CDS CDR20291_2756 NC_013316.1 3264010 3264543 R bacterioferritin complement(3264010..3264543) Clostridium difficile R20291 8468864 YP_003219236.1 CDS CDR20291_2757 NC_013316.1 3264670 3266745 R hypothetical protein complement(3264670..3266745) Clostridium difficile R20291 8468865 YP_003219237.1 CDS CDR20291_2758 NC_013316.1 3266748 3267494 R lantibiotic ABC transporter ATP-binding protein complement(3266748..3267494) Clostridium difficile R20291 8468866 YP_003219238.1 CDS CDR20291_2759 NC_013316.1 3267508 3267903 R sortase complement(3267508..3267903) Clostridium difficile R20291 8468867 YP_003219239.1 CDS CDR20291_2760 NC_013316.1 3268016 3269038 R two-component system, sensor histidine kinase complement(3268016..3269038) Clostridium difficile R20291 8468868 YP_003219240.1 CDS CDR20291_2761 NC_013316.1 3269035 3269649 R hypothetical protein complement(3269035..3269649) Clostridium difficile R20291 8468869 YP_003219241.1 CDS CDR20291_2762 NC_013316.1 3269792 3271141 R regulatory protease complement(3269792..3271141) Clostridium difficile R20291 8468870 YP_003219242.1 CDS tldD NC_013316.1 3271153 3272535 R regulatory protease complement(3271153..3272535) Clostridium difficile R20291 8468871 YP_003219243.1 CDS CDR20291_2764 NC_013316.1 3272779 3273993 D oxidoreductase 3272779..3273993 Clostridium difficile R20291 8470383 YP_003219244.1 CDS CDR20291_2765 NC_013316.1 3274170 3276083 D sigma-54 dependent regulatory protein 3274170..3276083 Clostridium difficile R20291 8468872 YP_003219245.1 CDS kdgT NC_013316.1 3276354 3277328 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 3276354..3277328 Clostridium difficile R20291 8468873 YP_003219246.1 CDS uxaA' NC_013316.1 3277349 3277624 D altronate hydrolase (N-terminus) 3277349..3277624 Clostridium difficile R20291 8469920 YP_003219247.1 CDS uxaA NC_013316.1 3277637 3278800 D altronate hydrolase 3277637..3278800 Clostridium difficile R20291 8470421 YP_003219248.1 CDS CDR20291_2769 NC_013316.1 3279137 3281155 D signaling protein 3279137..3281155 Clostridium difficile R20291 8470420 YP_003219249.1 CDS CDR20291_2770 NC_013316.1 3281512 3282852 R drug/sodium antiporter complement(3281512..3282852) Clostridium difficile R20291 8468874 YP_003219250.1 CDS fhuC NC_013316.1 3282864 3283646 R ferrichrome ABC transporter ATP-binding protein complement(3282864..3283646) Clostridium difficile R20291 8468875 YP_003219251.1 CDS fhuG NC_013316.1 3283661 3284683 R ferrichrome ABC transporter permease complement(3283661..3284683) Clostridium difficile R20291 8469733 YP_003219252.1 CDS fhuB NC_013316.1 3284689 3285702 R ferrichrome ABC transporter permease complement(3284689..3285702) Clostridium difficile R20291 8469735 YP_003219253.1 CDS fhuD NC_013316.1 3285830 3286768 R ferrichrome ABC transporter substrate-binding protein complement(3285830..3286768) Clostridium difficile R20291 8469732 YP_003219254.1 CDS CDR20291_2775 NC_013316.1 3287011 3287502 D hypothetical protein 3287011..3287502 Clostridium difficile R20291 8469734 YP_003219255.1 CDS celC NC_013316.1 3287614 3287931 R PTS system lichenan-specific transporter subunit IIA complement(3287614..3287931) Clostridium difficile R20291 8468876 YP_003219256.1 CDS CDR20291_2777 NC_013316.1 3287944 3288675 R hypothetical protein complement(3287944..3288675) Clostridium difficile R20291 8469579 YP_003219257.1 CDS celF NC_013316.1 3288701 3290011 R 6-phospho-beta-glucosidase complement(3288701..3290011) Clostridium difficile R20291 8468877 YP_003219258.1 CDS celB NC_013316.1 3290088 3291401 R PTS system lichenan-specific transporter subunit IIC complement(3290088..3291401) Clostridium difficile R20291 8469580 YP_003219259.1 CDS licB NC_013316.1 3291423 3291734 R PTS system lichenan-specific transporter subunit IIB complement(3291423..3291734) Clostridium difficile R20291 8469578 YP_003219260.1 CDS CDR20291_2781 NC_013316.1 3291934 3292638 R GntR family transcriptional regulator complement(3291934..3292638) Clostridium difficile R20291 8469937 YP_003219261.1 CDS CDR20291_2782 NC_013316.1 3292733 3294004 R drug/sodium antiporter complement(3292733..3294004) Clostridium difficile R20291 8468878 YP_003219262.1 CDS CDR20291_2783 NC_013316.1 3294593 3295738 D signaling protein 3294593..3295738 Clostridium difficile R20291 8468879 YP_003219263.1 CDS CDR20291_2784 NC_013316.1 3295828 3297546 R ABC transporter permease complement(3295828..3297546) Clostridium difficile R20291 8468880 YP_003219264.1 CDS CDR20291_2785 NC_013316.1 3297551 3298540 R ABC transporter ATP-binding protein complement(3297551..3298540) Clostridium difficile R20291 8468881 YP_003219265.1 CDS CDR20291_2786 NC_013316.1 3298636 3299757 R ABC transporter substrate-binding protein complement(3298636..3299757) Clostridium difficile R20291 8468882 YP_003219266.1 CDS ntpD NC_013316.1 3299962 3300630 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(3299962..3300630) Clostridium difficile R20291 8468883 YP_003219267.1 CDS ntpB NC_013316.1 3300636 3302009 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(3300636..3302009) Clostridium difficile R20291 8470026 YP_003219268.1 CDS ntpA NC_013316.1 3302006 3303784 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(3302006..3303784) Clostridium difficile R20291 8470024 YP_003219269.1 CDS ntpG NC_013316.1 3303901 3304224 R produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F complement(3303901..3304224) Clostridium difficile R20291 8470023 YP_003219270.1 CDS ntpC NC_013316.1 3304211 3305188 R produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit C complement(3304211..3305188) Clostridium difficile R20291 8470028 YP_003219271.1 CDS ntpE NC_013316.1 3305203 3305766 R V-type sodium ATP synthase subunit E complement(3305203..3305766) Clostridium difficile R20291 8470025 YP_003219272.1 CDS ntpK NC_013316.1 3305818 3306309 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(3305818..3306309) Clostridium difficile R20291 8470027 YP_003219273.1 CDS ntpI NC_013316.1 3306312 3308237 R V-type sodium ATP synthase subunit I complement(3306312..3308237) Clostridium difficile R20291 8470030 YP_003219274.1 CDS CDR20291_2795 NC_013316.1 3308239 3308550 R hypothetical protein complement(3308239..3308550) Clostridium difficile R20291 8470029 YP_003219275.1 CDS CDR20291_2796 NC_013316.1 3309180 3309455 R hypothetical protein complement(3309180..3309455) Clostridium difficile R20291 8468884 YP_003219276.1 CDS CDR20291_2797 NC_013316.1 3309570 3310979 R peptidoglycan-binding exported protein complement(3309570..3310979) Clostridium difficile R20291 8468885 YP_003219277.1 CDS CDR20291_2798 NC_013316.1 3311349 3312011 R hypothetical protein complement(3311349..3312011) Clostridium difficile R20291 8468886 YP_003219278.1 CDS CDR20291_2799 NC_013316.1 3312265 3314484 R signaling protein complement(3312265..3314484) Clostridium difficile R20291 8468887 YP_003219279.1 CDS adhE NC_013316.1 3314760 3317414 R bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(3314760..3317414) Clostridium difficile R20291 8468888 YP_003219280.1 CDS CDR20291_2801 NC_013316.1 3317918 3318118 D hypothetical protein 3317918..3318118 Clostridium difficile R20291 8469479 YP_003219281.1 CDS spoVFB NC_013316.1 3318326 3318916 R involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; dipicolinate synthase subunit B complement(3318326..3318916) Clostridium difficile R20291 8468889 YP_003219282.1 CDS dpaA NC_013316.1 3318919 3319848 R catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance; dipicolinate synthase subunit A complement(3318919..3319848) Clostridium difficile R20291 8469679 YP_003219283.1 CDS CDR20291_2804 NC_013316.1 3319870 3321261 R AMP-binding protein complement(3319870..3321261) Clostridium difficile R20291 8469678 YP_003219284.1 CDS CDR20291_2805 NC_013316.1 3321265 3322401 R thiolase complement(3321265..3322401) Clostridium difficile R20291 8468890 YP_003219285.1 CDS bioY NC_013316.1 3322433 3322996 R biotin synthase complement(3322433..3322996) Clostridium difficile R20291 8468891 YP_003219286.1 CDS CDR20291_2807 NC_013316.1 3323302 3324081 D hypothetical protein 3323302..3324081 Clostridium difficile R20291 8469551 YP_003219287.1 CDS CDR20291_2809 NC_013316.1 3324537 3324965 R acetyltransferase complement(3324537..3324965) Clostridium difficile R20291 8468893 YP_003219288.1 CDS CDR20291_2810 NC_013316.1 3326956 3327234 R hypothetical protein complement(3326956..3327234) Clostridium difficile R20291 8468894 YP_003219289.1 CDS CDR20291_2811 NC_013316.1 3327225 3328205 R hypothetical protein complement(3327225..3328205) Clostridium difficile R20291 8468895 YP_003219290.1 CDS CDR20291_2812 NC_013316.1 3328208 3328759 R hypothetical protein complement(3328208..3328759) Clostridium difficile R20291 8468896 YP_003219291.1 CDS CDR20291_2813 NC_013316.1 3328774 3331095 R hypothetical protein complement(3328774..3331095) Clostridium difficile R20291 8468897 YP_003219292.1 CDS CDR20291_2814 NC_013316.1 3331106 3331807 R hypothetical protein complement(3331106..3331807) Clostridium difficile R20291 8468898 YP_003219293.1 CDS CDR20291_2815 NC_013316.1 3331809 3332723 R hypothetical protein complement(3331809..3332723) Clostridium difficile R20291 8468899 YP_003219294.1 CDS CDR20291_2816 NC_013316.1 3332725 3334602 R hypothetical protein complement(3332725..3334602) Clostridium difficile R20291 8468900 YP_003219295.1 CDS CDR20291_2817 NC_013316.1 3334608 3335345 R hypothetical protein complement(3334608..3335345) Clostridium difficile R20291 8468901 YP_003219296.1 CDS CDR20291_2818 NC_013316.1 3335423 3336340 R hypothetical protein complement(3335423..3336340) Clostridium difficile R20291 8468902 YP_003219297.1 CDS CDR20291_2819 NC_013316.1 3336619 3338535 R ABC transporter permease complement(3336619..3338535) Clostridium difficile R20291 8468903 YP_003219298.1 CDS CDR20291_2820 NC_013316.1 3338535 3339281 R ABC transporter ATP-binding protein complement(3338535..3339281) Clostridium difficile R20291 8468904 YP_003219299.1 CDS bacA2 NC_013316.1 3339385 3340236 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase complement(3339385..3340236) Clostridium difficile R20291 8468905 YP_003219300.1 CDS CDR20291_2822 NC_013316.1 3340484 3341488 R two-component system histidine kinase complement(3340484..3341488) Clostridium difficile R20291 8469536 YP_003219301.1 CDS CDR20291_2823 NC_013316.1 3341498 3342190 R two-component system esponse regulator complement(3341498..3342190) Clostridium difficile R20291 8468906 YP_003219302.1 CDS CDR20291_2824 NC_013316.1 3342504 3343463 R ABC transporter substrate-binding protein complement(3342504..3343463) Clostridium difficile R20291 8468907 YP_003219303.1 CDS CDR20291_2825 NC_013316.1 3343496 3344374 R ABC transporter ATP-binding protein complement(3343496..3344374) Clostridium difficile R20291 8468908 YP_003219304.1 CDS CDR20291_2826 NC_013316.1 3344367 3345149 R ABC transporter permease complement(3344367..3345149) Clostridium difficile R20291 8468909 YP_003219305.1 CDS CDR20291_2827 NC_013316.1 3345150 3345779 R hypothetical protein complement(3345150..3345779) Clostridium difficile R20291 8468910 YP_003219306.1 CDS CDR20291_2828 NC_013316.1 3346174 3346800 R hypothetical protein complement(3346174..3346800) Clostridium difficile R20291 8468911 YP_003219307.1 CDS nrdF NC_013316.1 3346876 3347847 R ribonucleoside-diphosphate reductase subunit beta complement(3346876..3347847) Clostridium difficile R20291 8468912 YP_003219308.1 CDS nrdE NC_013316.1 3347860 3349959 R ribonucleoside-diphosphate reductase subunit alpha complement(3347860..3349959) Clostridium difficile R20291 8470020 YP_003219309.1 CDS CDR20291_2831 NC_013316.1 3350422 3351162 D hypothetical protein 3350422..3351162 Clostridium difficile R20291 8470019 YP_003219310.1 CDS CDR20291_2832 NC_013316.1 3351282 3352478 R iron ABC transporter ATP-binding protein complement(3351282..3352478) Clostridium difficile R20291 8468913 YP_003219311.1 CDS CDR20291_2834 NC_013316.1 3352788 3353906 R transposase-like protein b complement(3352788..3353906) Clostridium difficile R20291 8468915 YP_003219312.1 CDS CDR20291_2835 NC_013316.1 3355554 3356684 R iron ABC transporter substrate-binding protein complement(3355554..3356684) Clostridium difficile R20291 8468916 YP_003219313.1 CDS CDR20291_2836 NC_013316.1 3357146 3358039 R dihydrodipicolinate synthase complement(3357146..3358039) Clostridium difficile R20291 8468917 YP_003219314.1 CDS CDR20291_2837 NC_013316.1 3358119 3359021 R isomerase/hydrolase complement(3358119..3359021) Clostridium difficile R20291 8468918 YP_003219315.1 CDS CDR20291_2838 NC_013316.1 3359071 3360231 R carbohydrate hydrolase complement(3359071..3360231) Clostridium difficile R20291 8468919 YP_003219316.1 CDS CDR20291_2839 NC_013316.1 3360387 3360692 R carbohydrate hydrolase (N-terminus) complement(3360387..3360692) Clostridium difficile R20291 8468920 YP_003219317.1 CDS CDR20291_2840 NC_013316.1 3360790 3361764 R transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease complement(3360790..3361764) Clostridium difficile R20291 8468921 YP_003219318.1 CDS CDR20291_2841 NC_013316.1 3362347 3363123 D IclR family transcriptional regulator 3362347..3363123 Clostridium difficile R20291 8468922 YP_003219319.1 CDS CDR20291_2842 NC_013316.1 3363456 3364601 D alcohol dehydrogenase 3363456..3364601 Clostridium difficile R20291 8468923 YP_003219320.1 CDS CDR20291_2843 NC_013316.1 3364756 3365625 R hypothetical protein complement(3364756..3365625) Clostridium difficile R20291 8468924 YP_003219321.1 CDS CDR20291_2845 NC_013316.1 3366827 3368215 R pyridine-nucleotide-disulfide oxidoreductase complement(3366827..3368215) Clostridium difficile R20291 8468926 YP_003219322.1 CDS CDR20291_2846 NC_013316.1 3368336 3369613 R cytochrome C biogenesis protein complement(3368336..3369613) Clostridium difficile R20291 8468927 YP_003219323.1 CDS CDR20291_2847 NC_013316.1 3369750 3370085 R transcriptional regulator complement(3369750..3370085) Clostridium difficile R20291 8468928 YP_003219324.1 CDS CDR20291_2848 NC_013316.1 3370554 3373154 R glycosyl hydrolase complement(3370554..3373154) Clostridium difficile R20291 8468929 YP_003219325.1 CDS CDR20291_2849 NC_013316.1 3373274 3374389 R PTS system transporter subunit IIC complement(3373274..3374389) Clostridium difficile R20291 8468930 YP_003219326.1 CDS CDR20291_2850 NC_013316.1 3374390 3374710 R PTS system transporter subunit IIB complement(3374390..3374710) Clostridium difficile R20291 8468931 YP_003219327.1 CDS CDR20291_2851 NC_013316.1 3374713 3375174 R PTS system transporter subunit IIA complement(3374713..3375174) Clostridium difficile R20291 8468932 YP_003219328.1 CDS CDR20291_2852 NC_013316.1 3375174 3377138 R transcription antiterminator complement(3375174..3377138) Clostridium difficile R20291 8468933 YP_003219329.1 CDS CDR20291_2853 NC_013316.1 3377286 3378158 D sugar uptake protein 3377286..3378158 Clostridium difficile R20291 8468934 YP_003219330.1 CDS CDR20291_2854 NC_013316.1 3378402 3378869 R hypothetical protein complement(3378402..3378869) Clostridium difficile R20291 8468935 YP_003219331.1 CDS CDR20291_2855 NC_013316.1 3378974 3379906 R transporter complement(3378974..3379906) Clostridium difficile R20291 8468936 YP_003219332.1 CDS CDR20291_2856 NC_013316.1 3380075 3381019 R hypothetical protein complement(3380075..3381019) Clostridium difficile R20291 8468937 YP_003219333.1 CDS CDR20291_2857 NC_013316.1 3381363 3382799 R hypothetical protein complement(3381363..3382799) Clostridium difficile R20291 8468938 YP_003219334.1 CDS CDR20291_2858 NC_013316.1 3383009 3384409 R hypothetical protein complement(3383009..3384409) Clostridium difficile R20291 8468939 YP_003219335.1 CDS CDR20291_2859 NC_013316.1 3384436 3385782 R hypothetical protein complement(3384436..3385782) Clostridium difficile R20291 8468940 YP_003219336.1 CDS CDR20291_2860 NC_013316.1 3386150 3386857 R iron-sulfur-binding protein complement(3386150..3386857) Clostridium difficile R20291 8468941 YP_003219337.1 CDS CDR20291_2861 NC_013316.1 3386886 3387632 R hypothetical protein complement(3386886..3387632) Clostridium difficile R20291 8468942 YP_003219338.1 CDS crr NC_013316.1 3387989 3388459 R PTS system glucose-specific transporter subunit IIA complement(3387989..3388459) Clostridium difficile R20291 8468943 YP_003219339.1 CDS CDR20291_2863 NC_013316.1 3388483 3389082 R phosphosugar isomerase complement(3388483..3389082) Clostridium difficile R20291 8469617 YP_003219340.1 CDS malY NC_013316.1 3389100 3390284 R bifunctional protein repressor/cystathionine beta-lyase complement(3389100..3390284) Clostridium difficile R20291 8468944 YP_003219341.1 CDS malX NC_013316.1 3390277 3391854 R PTS system maltose and glucose-specific transporter subunit IIBC complement(3390277..3391854) Clostridium difficile R20291 8469952 YP_003219342.1 CDS CDR20291_2866 NC_013316.1 3392207 3393043 R transcription antiterminator complement(3392207..3393043) Clostridium difficile R20291 8469951 YP_003219343.1 CDS CDR20291_2867 NC_013316.1 3393929 3395203 D aminotransferase 3393929..3395203 Clostridium difficile R20291 8468945 YP_003219344.1 CDS CDR20291_2868 NC_013316.1 3395410 3395727 R thioredoxin complement(3395410..3395727) Clostridium difficile R20291 8468946 YP_003219345.1 CDS CDR20291_2869 NC_013316.1 3395994 3396746 D sugar-specific transcriptional regulator 3395994..3396746 Clostridium difficile R20291 8468947 YP_003219346.1 CDS CDR20291_2870 NC_013316.1 3396733 3397614 D hypothetical protein 3396733..3397614 Clostridium difficile R20291 8468948 YP_003219347.1 CDS CDR20291_2871 NC_013316.1 3397840 3399195 R proton-dependent oligopeptide transporter complement(3397840..3399195) Clostridium difficile R20291 8468949 YP_003219348.1 CDS CDR20291_2872 NC_013316.1 3401103 3401612 R regulatory protein complement(3401103..3401612) Clostridium difficile R20291 8468950 YP_003219349.1 CDS CDR20291_2873 NC_013316.1 3401823 3403232 R hypothetical protein complement(3401823..3403232) Clostridium difficile R20291 8468951 YP_003219350.1 CDS CDR20291_2874 NC_013316.1 3403236 3404366 R hypothetical protein complement(3403236..3404366) Clostridium difficile R20291 8468952 YP_003219351.1 CDS CDR20291_2875 NC_013316.1 3404378 3405181 R hypothetical protein complement(3404378..3405181) Clostridium difficile R20291 8468953 YP_003219352.1 CDS pepI NC_013316.1 3405563 3406489 R proline iminopeptidase complement(3405563..3406489) Clostridium difficile R20291 8468954 YP_003219353.1 CDS CDR20291_2877 NC_013316.1 3406894 3407874 D hypothetical protein 3406894..3407874 Clostridium difficile R20291 8470063 YP_003219354.1 CDS CDR20291_2878 NC_013316.1 3407990 3409021 R hypothetical protein complement(3407990..3409021) Clostridium difficile R20291 8468955 YP_003219355.1 CDS CDR20291_2879 NC_013316.1 3409633 3410484 R phosphosugar-binding transcriptional regulator complement(3409633..3410484) Clostridium difficile R20291 8468956 YP_003219356.1 CDS CDR20291_2880 NC_013316.1 3410501 3411421 R acyl-CoA reductase/dehydratase complement(3410501..3411421) Clostridium difficile R20291 8468957 YP_003219357.1 CDS murQ NC_013316.1 3411531 3412445 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase complement(3411531..3412445) Clostridium difficile R20291 8468958 YP_003219358.1 CDS CDR20291_2882 NC_013316.1 3412544 3413650 R hypothetical protein complement(3412544..3413650) Clostridium difficile R20291 8468959 YP_003219359.1 CDS CDR20291_2883 NC_013316.1 3413874 3415220 R PTS system transporter subunit IIC complement(3413874..3415220) Clostridium difficile R20291 8468960 YP_003219360.1 CDS CDR20291_2884 NC_013316.1 3415309 3415617 R PTS system, IIb component complement(3415309..3415617) Clostridium difficile R20291 8468961 YP_003219361.1 CDS CDR20291_2885 NC_013316.1 3415878 3416186 R hypothetical protein complement(3415878..3416186) Clostridium difficile R20291 8468962 YP_003219362.1 CDS anmK NC_013316.1 3416269 3417429 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(3416269..3417429) Clostridium difficile R20291 8468963 YP_003219363.1 CDS CDR20291_2887 NC_013316.1 3417859 3418878 R two-component system sensor histidine kinase complement(3417859..3418878) Clostridium difficile R20291 8468964 YP_003219364.1 CDS CDR20291_2888 NC_013316.1 3418878 3419567 R two-component system response regulator complement(3418878..3419567) Clostridium difficile R20291 8468965 YP_003219365.1 CDS CDR20291_2889 NC_013316.1 3419704 3421611 R ABC transporter permease complement(3419704..3421611) Clostridium difficile R20291 8468966 YP_003219366.1 CDS CDR20291_2890 NC_013316.1 3421612 3422364 R ABC transporter ATP-binding protein complement(3421612..3422364) Clostridium difficile R20291 8468967 YP_003219367.1 CDS CDR20291_2891 NC_013316.1 3422682 3423836 R proton/sugar symporter complement(3422682..3423836) Clostridium difficile R20291 8468968 YP_003219368.1 CDS CDR20291_2892 NC_013316.1 3423839 3424306 R PTS system transporter subunit IIA complement(3423839..3424306) Clostridium difficile R20291 8468969 YP_003219369.1 CDS CDR20291_2893 NC_013316.1 3424320 3424808 R hypothetical protein complement(3424320..3424808) Clostridium difficile R20291 8468970 YP_003219370.1 CDS glvA NC_013316.1 3424822 3426153 R maltose-6'-phosphate glucosidase complement(3424822..3426153) Clostridium difficile R20291 8468971 YP_003219371.1 CDS glvC NC_013316.1 3426167 3427753 R PTS system transporter subunit IIBC complement(3426167..3427753) Clostridium difficile R20291 8469823 YP_003219372.1 CDS glvR NC_013316.1 3427901 3428686 R phosphosugar-binding transcriptional regulator complement(3427901..3428686) Clostridium difficile R20291 8469824 YP_003219373.1 CDS CDR20291_2897 NC_013316.1 3428853 3430052 R hypothetical protein complement(3428853..3430052) Clostridium difficile R20291 8469826 YP_003219374.1 CDS xylA NC_013316.1 3430574 3431938 R xylose isomerase complement(3430574..3431938) Clostridium difficile R20291 8468972 YP_003219375.1 CDS xylB NC_013316.1 3432007 3433557 R xylulose kinase complement(3432007..3433557) Clostridium difficile R20291 8470441 YP_003219376.1 CDS xylR NC_013316.1 3433699 3434925 D xylose repressor 3433699..3434925 Clostridium difficile R20291 8470442 YP_003219377.1 CDS CDR20291_2901 NC_013316.1 3435081 3435467 R PTS system transporter subunit IIA complement(3435081..3435467) Clostridium difficile R20291 8470443 YP_003219378.1 CDS CDR20291_2902 NC_013316.1 3435506 3436000 R PTS system transporter subunit IIB complement(3435506..3436000) Clostridium difficile R20291 8468973 YP_003219379.1 CDS CDR20291_2903 NC_013316.1 3436008 3436817 R PTS system transporter subunit IID complement(3436008..3436817) Clostridium difficile R20291 8468974 YP_003219380.1 CDS CDR20291_2904 NC_013316.1 3436810 3437589 R PTS system transporter subunit IIC complement(3436810..3437589) Clostridium difficile R20291 8468975 YP_003219381.1 CDS CDR20291_2905 NC_013316.1 3437589 3439667 R glycosyl hydrolase complement(3437589..3439667) Clostridium difficile R20291 8468976 YP_003219382.1 CDS CDR20291_2906 NC_013316.1 3440458 3440979 R hypothetical protein complement(3440458..3440979) Clostridium difficile R20291 8468977 YP_003219383.1 CDS CDR20291_2907 NC_013316.1 3441145 3441711 D hypothetical protein 3441145..3441711 Clostridium difficile R20291 8468978 YP_003219384.1 CDS CDR20291_2908 NC_013316.1 3441928 3443991 R hypothetical protein complement(3441928..3443991) Clostridium difficile R20291 8468979 YP_003219385.1 CDS CDR20291_2909 NC_013316.1 3444372 3447707 R type i restriction enzyme r subunit complement(3444372..3447707) Clostridium difficile R20291 8468980 YP_003219386.1 CDS CDR20291_2910 NC_013316.1 3447757 3448185 R hypothetical protein complement(3447757..3448185) Clostridium difficile R20291 8468981 YP_003219387.1 CDS CDR20291_2911 NC_013316.1 3448929 3450113 R restriction modification system dna specificity domain complement(3448929..3450113) Clostridium difficile R20291 8468982 YP_003219388.1 CDS CDR20291_2912 NC_013316.1 3450117 3451580 R type i restriction enzyme m subunit complement(3450117..3451580) Clostridium difficile R20291 8468983 YP_003219389.1 CDS gatY NC_013316.1 3452090 3452959 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase complement(3452090..3452959) Clostridium difficile R20291 8468984 YP_003219390.1 CDS tagT NC_013316.1 3452979 3454895 R PTS system transporter subunit IIABC complement(3452979..3454895) Clostridium difficile R20291 8469483 YP_003219391.1 CDS tagK NC_013316.1 3454898 3455854 R tagatose (1)-phosphate-kinase complement(3454898..3455854) Clostridium difficile R20291 8470353 YP_003219392.1 CDS CDR20291_2916 NC_013316.1 3455920 3456672 R phosphosugar-binding transcriptional regulator complement(3455920..3456672) Clostridium difficile R20291 8470352 YP_003219393.1 CDS CDR20291_2917 NC_013316.1 3456969 3457586 R hypothetical protein complement(3456969..3457586) Clostridium difficile R20291 8468985 YP_003219394.1 CDS ascB NC_013316.1 3457674 3459131 R 6-phospho-beta-glucosidase complement(3457674..3459131) Clostridium difficile R20291 8468986 YP_003219395.1 CDS CDR20291_2919 NC_013316.1 3459153 3459506 R PTS system transporter subunit IIA complement(3459153..3459506) Clostridium difficile R20291 8469512 YP_003219396.1 CDS CDR20291_2920 NC_013316.1 3459535 3460782 R PTS system transporter subunit IIC complement(3459535..3460782) Clostridium difficile R20291 8468987 YP_003219397.1 CDS CDR20291_2921 NC_013316.1 3460790 3461107 R PTS system transporter subunit IIB complement(3460790..3461107) Clostridium difficile R20291 8468988 YP_003219398.1 CDS CDR20291_2922 NC_013316.1 3461274 3463268 D transcription antiterminator 3461274..3463268 Clostridium difficile R20291 8468989 YP_003219399.1 CDS garK NC_013316.1 3463391 3464545 R glycerate kinase complement(3463391..3464545) Clostridium difficile R20291 8468990 YP_003219400.1 CDS CDR20291_2924 NC_013316.1 3464827 3467442 R alpha-mannosidase complement(3464827..3467442) Clostridium difficile R20291 8469792 YP_003219401.1 CDS hrsA NC_013316.1 3467586 3469511 R involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC complement(3467586..3469511) Clostridium difficile R20291 8468991 YP_003219402.1 CDS CDR20291_2926 NC_013316.1 3469641 3470396 R phosphosugar-binding transcriptional regulator complement(3469641..3470396) Clostridium difficile R20291 8469888 YP_003219403.1 CDS CDR20291_2927 NC_013316.1 3470629 3471408 R cellobiose-phosphate degrading protein complement(3470629..3471408) Clostridium difficile R20291 8468992 YP_003219404.1 CDS CDR20291_2928 NC_013316.1 3471401 3472849 R PTS system transporter subunit IIABC complement(3471401..3472849) Clostridium difficile R20291 8468993 YP_003219405.1 CDS treR NC_013316.1 3473219 3473941 D GntR family transcriptional regulator 3473219..3473941 Clostridium difficile R20291 8468994 YP_003219406.1 CDS treA NC_013316.1 3474138 3475805 D trehalose-6-phosphate hydrolase 3474138..3475805 Clostridium difficile R20291 8470392 YP_003219407.1 CDS CDR20291_2931 NC_013316.1 3475901 3477220 R amino acid permease complement(3475901..3477220) Clostridium difficile R20291 8470391 YP_003219408.1 CDS CDR20291_2932 NC_013316.1 3477261 3478007 R glutamine amidotransferase complement(3477261..3478007) Clostridium difficile R20291 8468995 YP_003219409.1 CDS CDR20291_2933 NC_013316.1 3478251 3480260 R sigma-54-dependent transcriptional regulator complement(3478251..3480260) Clostridium difficile R20291 8468996 YP_003219410.1 CDS bglA1 NC_013316.1 3480698 3482131 R 6-phospho-beta-glucosidase complement(3480698..3482131) Clostridium difficile R20291 8468997 YP_003219411.1 CDS CDR20291_2935 NC_013316.1 3482218 3484134 R PTS system transporter subunit IIABC complement(3482218..3484134) Clostridium difficile R20291 8469543 YP_003219412.1 CDS bglG1 NC_013316.1 3484208 3485068 R transcription antiterminator complement(3484208..3485068) Clostridium difficile R20291 8468998 YP_003219413.1 CDS CDR20291_2937 NC_013316.1 3485419 3486606 R amidohydrolase complement(3485419..3486606) Clostridium difficile R20291 8469549 YP_003219414.1 CDS CDR20291_2938 NC_013316.1 3486620 3488011 R C4-dicarboxylate anaerobic carrier complement(3486620..3488011) Clostridium difficile R20291 8468999 YP_003219415.1 CDS CDR20291_2939 NC_013316.1 3488606 3490258 R PTS system transporter subunit IIBC complement(3488606..3490258) Clostridium difficile R20291 8469000 YP_003219416.1 CDS CDR20291_2940 NC_013316.1 3490278 3491681 R dipeptidase complement(3490278..3491681) Clostridium difficile R20291 8469001 YP_003219417.1 CDS CDR20291_2941 NC_013316.1 3491945 3492436 R PTS syste, IIa component complement(3491945..3492436) Clostridium difficile R20291 8469002 YP_003219418.1 CDS CDR20291_2942 NC_013316.1 3492462 3493274 R hydrolase complement(3492462..3493274) Clostridium difficile R20291 8469003 YP_003219419.1 CDS CDR20291_2943 NC_013316.1 3493287 3494438 R alcohol dehydrogenase; alcohol dehydrogease complement(3493287..3494438) Clostridium difficile R20291 8469004 YP_003219420.1 CDS CDR20291_2944 NC_013316.1 3494708 3495349 D phopho-sugar aldolase 3494708..3495349 Clostridium difficile R20291 8469005 YP_003219421.1 CDS CDR20291_2945 NC_013316.1 3495375 3496919 D transcription antiterminator 3495375..3496919 Clostridium difficile R20291 8469006 YP_003219422.1 CDS CDR20291_2946 NC_013316.1 3497136 3497762 R hypothetical protein complement(3497136..3497762) Clostridium difficile R20291 8469007 YP_003219423.1 CDS CDR20291_2947 NC_013316.1 3497897 3498613 R pentose-5-phosphate 3-epimerase complement(3497897..3498613) Clostridium difficile R20291 8469008 YP_003219424.1 CDS CDR20291_2948 NC_013316.1 3499010 3500242 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 3499010..3500242 Clostridium difficile R20291 8469009 YP_003219425.1 CDS CDR20291_2950 NC_013316.1 3501836 3502954 D transposase-like protein b 3501836..3502954 Clostridium difficile R20291 8469011 YP_003219426.1 CDS CDR20291_2951 NC_013316.1 3504294 3505484 R amidohydrolase complement(3504294..3505484) Clostridium difficile R20291 8469012 YP_003219427.1 CDS CDR20291_2952 NC_013316.1 3505590 3506969 R amidohydrolase complement(3505590..3506969) Clostridium difficile R20291 8469013 YP_003219428.1 CDS CDR20291_2953 NC_013316.1 3507000 3508208 R hypothetical protein complement(3507000..3508208) Clostridium difficile R20291 8469014 YP_003219429.1 CDS bglA2 NC_013316.1 3509232 3510686 R 6-phospho-beta-glucosidase BglA; 6-phospho-beta-glucosidase complement(3509232..3510686) Clostridium difficile R20291 8469015 YP_003219430.1 CDS bglF NC_013316.1 3510706 3512577 R PTS system beta-glucoside-specific transporter subunit IIABC complement(3510706..3512577) Clostridium difficile R20291 8469544 YP_003219431.1 CDS bglG NC_013316.1 3512567 3513427 R beta-glucoside bgl operon transcription antiterminator complement(3512567..3513427) Clostridium difficile R20291 8469546 YP_003219432.1 CDS CDR20291_2957 NC_013316.1 3514150 3514554 R hypothetical protein complement(3514150..3514554) Clostridium difficile R20291 8469548 YP_003219433.1 CDS CDR20291_2958 NC_013316.1 3514746 3515933 R glycosyltransferase complement(3514746..3515933) Clostridium difficile R20291 8469016 YP_003219434.1 CDS tndX NC_013316.1 3516317 3517930 R conjugative transposon site-specific recombinase complement(3516317..3517930) Clostridium difficile R20291 8469017 YP_003219435.1 CDS CDR20291_2960 NC_013316.1 3519077 3520156 R hypothetical protein complement(3519077..3520156) Clostridium difficile R20291 8470388 YP_003219436.1 CDS CDR20291_2961 NC_013316.1 3520536 3521183 R hypothetical protein complement(3520536..3521183) Clostridium difficile R20291 8469018 YP_003219437.1 CDS CDR20291_2962 NC_013316.1 3522375 3524324 R enoate reductase complement(3522375..3524324) Clostridium difficile R20291 8469019 YP_003219438.1 CDS CDR20291_2963 NC_013316.1 3524296 3525648 R nitrate/nitrite transporter complement(3524296..3525648) Clostridium difficile R20291 8469020 YP_003219439.1 CDS CDR20291_2964 NC_013316.1 3525846 3526403 D transcriptional regulator 3525846..3526403 Clostridium difficile R20291 8469021 YP_003219440.1 CDS CDR20291_2965 NC_013316.1 3526848 3527597 D flavodoxin 3526848..3527597 Clostridium difficile R20291 8469022 YP_003219441.1 CDS CDR20291_2966 NC_013316.1 3527763 3528128 R ArsR family transcriptional regulator complement(3527763..3528128) Clostridium difficile R20291 8469023 YP_003219442.1 CDS CDR20291_2967 NC_013316.1 3528144 3528926 R nitroreductase complement(3528144..3528926) Clostridium difficile R20291 8469024 YP_003219443.1 CDS ascB2 NC_013316.1 3529331 3530758 R 6-phospho-beta-glucosidase complement(3529331..3530758) Clostridium difficile R20291 8469025 YP_003219444.1 CDS CDR20291_2969 NC_013316.1 3530819 3532747 R PTS system transporter subunit IIABC complement(3530819..3532747) Clostridium difficile R20291 8469513 YP_003219445.1 CDS bglG2 NC_013316.1 3532892 3533755 R transcription antiterminator complement(3532892..3533755) Clostridium difficile R20291 8469026 YP_003219446.1 CDS CDR20291_2971 NC_013316.1 3534051 3535451 R PTS system transporter subunit IIABC complement(3534051..3535451) Clostridium difficile R20291 8469550 YP_003219447.1 CDS pgmB NC_013316.1 3535490 3536161 R beta-phosphoglucomutase complement(3535490..3536161) Clostridium difficile R20291 8469027 YP_003219448.1 CDS CDR20291_2973 NC_013316.1 3536163 3538553 R glycosyl hydrolase complement(3536163..3538553) Clostridium difficile R20291 8470073 YP_003219449.1 CDS acsB3 NC_013316.1 3538579 3540027 R 6-phospho-beta-glucosidase complement(3538579..3540027) Clostridium difficile R20291 8469028 YP_003219450.1 CDS CDR20291_2975 NC_013316.1 3540432 3541319 R AraC family transcriptional regulator complement(3540432..3541319) Clostridium difficile R20291 8469472 YP_003219451.1 CDS CDR20291_2976 NC_013316.1 3541419 3541868 R PTS system transporter subunit IIA complement(3541419..3541868) Clostridium difficile R20291 8469029 YP_003219452.1 CDS CDR20291_2977 NC_013316.1 3541858 3543765 R transcription antiterminator complement(3541858..3543765) Clostridium difficile R20291 8469030 YP_003219453.1 CDS CDR20291_2978 NC_013316.1 3544033 3545928 R PTS system transporter subunit IIABC complement(3544033..3545928) Clostridium difficile R20291 8469031 YP_003219454.1 CDS CDR20291_2979 NC_013316.1 3545964 3546842 R hypothetical protein complement(3545964..3546842) Clostridium difficile R20291 8469032 YP_003219455.1 CDS CDR20291_2980 NC_013316.1 3547393 3549087 R ABC transporter permease complement(3547393..3549087) Clostridium difficile R20291 8469033 YP_003219456.1 CDS CDR20291_2981 NC_013316.1 3549089 3550081 R spermidine/putrescine ABC transporter ATP-binding protein complement(3549089..3550081) Clostridium difficile R20291 8469034 YP_003219457.1 CDS CDR20291_2982 NC_013316.1 3550429 3551055 R hypothetical protein complement(3550429..3551055) Clostridium difficile R20291 8469035 YP_003219458.1 CDS CDR20291_2983 NC_013316.1 3551235 3552278 R Fe3+ ABC transporter periplasmic component-like protein complement(3551235..3552278) Clostridium difficile R20291 8469036 YP_003219459.1 CDS CDR20291_2984 NC_013316.1 3554373 3555002 R hypothetical protein complement(3554373..3555002) Clostridium difficile R20291 8469037 YP_003219460.1 CDS CDR20291_2985 NC_013316.1 3555080 3556042 R transcriptional regulator complement(3555080..3556042) Clostridium difficile R20291 8469038 YP_003219461.1 CDS CDR20291_2986 NC_013316.1 3557027 3561382 R hypothetical protein complement(3557027..3561382) Clostridium difficile R20291 8469039 YP_003219462.1 CDS CDR20291_2987 NC_013316.1 3561369 3562097 R hypothetical protein complement(3561369..3562097) Clostridium difficile R20291 8469040 YP_003219463.1 CDS CDR20291_2988 NC_013316.1 3562115 3563734 R hypothetical protein complement(3562115..3563734) Clostridium difficile R20291 8469041 YP_003219464.1 CDS CDR20291_2989 NC_013316.1 3563734 3564744 R hypothetical protein complement(3563734..3564744) Clostridium difficile R20291 8469042 YP_003219465.1 CDS CDR20291_2990 NC_013316.1 3566476 3567768 R hypothetical protein complement(3566476..3567768) Clostridium difficile R20291 8469043 YP_003219466.1 CDS CDR20291_2991 NC_013316.1 3567768 3568982 R frg domain-containing protein complement(3567768..3568982) Clostridium difficile R20291 8469044 YP_003219467.1 CDS CDR20291_2992 NC_013316.1 3570313 3570648 R transposase, is4 complement(3570313..3570648) Clostridium difficile R20291 8469045 YP_003219468.1 CDS CDR20291_2993 NC_013316.1 3570895 3571341 R hypothetical protein complement(3570895..3571341) Clostridium difficile R20291 8469046 YP_003219469.1 CDS CDR20291_2994 NC_013316.1 3573036 3575021 R CRISPR-associated helicase cas3 complement(3573036..3575021) Clostridium difficile R20291 8469047 YP_003219470.1 CDS CDR20291_2995 NC_013316.1 3575032 3576102 R CRISPR-associated autoregulator complement(3575032..3576102) Clostridium difficile R20291 8469048 YP_003219471.1 CDS CDR20291_2996 NC_013316.1 3576123 3577289 R hypothetical protein complement(3576123..3577289) Clostridium difficile R20291 8469049 YP_003219472.1 CDS CDR20291_2997 NC_013316.1 3577291 3578055 R CRISPR-associated protein cas6 complement(3577291..3578055) Clostridium difficile R20291 8469050 YP_003219473.1 CDS CDR20291_2998 NC_013316.1 3578046 3578693 R CRISPR-associated protein cas5 family complement(3578046..3578693) Clostridium difficile R20291 8469051 YP_003219474.1 CDS CDR20291_2999 NC_013316.1 3579173 3580300 R hypothetical protein complement(3579173..3580300) Clostridium difficile R20291 8469052 YP_003219475.1 CDS CDR20291_3000 NC_013316.1 3581095 3582330 R phage-related replicative helicase complement(3581095..3582330) Clostridium difficile R20291 8469053 YP_003219476.1 CDS CDR20291_3001 NC_013316.1 3582442 3583191 R hypothetical protein complement(3582442..3583191) Clostridium difficile R20291 8469054 YP_003219477.1 CDS CDR20291_3002 NC_013316.1 3583207 3583521 R hypothetical protein complement(3583207..3583521) Clostridium difficile R20291 8469055 YP_003219478.1 CDS CDR20291_3003 NC_013316.1 3583525 3583725 R phage transcriptional regulator complement(3583525..3583725) Clostridium difficile R20291 8469056 YP_003219479.1 CDS CDR20291_3004 NC_013316.1 3583794 3584636 D phage DNA-binding protein 3583794..3584636 Clostridium difficile R20291 8469057 YP_003219480.1 CDS CDR20291_3005 NC_013316.1 3584887 3585378 D phage repressor 3584887..3585378 Clostridium difficile R20291 8469058 YP_003219481.1 CDS CDR20291_3006 NC_013316.1 3585452 3586222 D hypothetical protein 3585452..3586222 Clostridium difficile R20291 8469059 YP_003219482.1 CDS CDR20291_3007 NC_013316.1 3586212 3587378 D phage integrase 3586212..3587378 Clostridium difficile R20291 8469060 YP_003219483.1 CDS CDR20291_3008 NC_013316.1 3587730 3588182 R hypothetical protein complement(3587730..3588182) Clostridium difficile R20291 8469061 YP_003219484.1 CDS CDR20291_3009 NC_013316.1 3588209 3588436 R hypothetical protein complement(3588209..3588436) Clostridium difficile R20291 8469062 YP_003219485.1 CDS CDR20291_3010 NC_013316.1 3589335 3590240 D hypothetical protein 3589335..3590240 Clostridium difficile R20291 8469063 YP_003219486.1 CDS smpB NC_013316.1 3591421 3591876 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(3591421..3591876) Clostridium difficile R20291 8469064 YP_003219487.1 CDS CDR20291_3012 NC_013316.1 3592517 3593344 D hypothetical protein 3592517..3593344 Clostridium difficile R20291 8470289 YP_003219488.1 CDS CDR20291_3013 NC_013316.1 3594253 3594825 D acetyltransferase 3594253..3594825 Clostridium difficile R20291 8469065 YP_003219489.1 CDS CDR20291_3014 NC_013316.1 3595092 3595637 R ABC transporter permease complement(3595092..3595637) Clostridium difficile R20291 8469066 YP_003219490.1 CDS CDR20291_3015 NC_013316.1 3595666 3596955 R ABC transporter permease complement(3595666..3596955) Clostridium difficile R20291 8469067 YP_003219491.1 CDS CDR20291_3016 NC_013316.1 3596952 3597824 R ABC transporter ATP-binding protein complement(3596952..3597824) Clostridium difficile R20291 8469068 YP_003219492.1 CDS CDR20291_3017 NC_013316.1 3598354 3598845 R hypothetical protein complement(3598354..3598845) Clostridium difficile R20291 8469069 YP_003219493.1 CDS rnr NC_013316.1 3599939 3602074 R ribonuclease R complement(3599939..3602074) Clostridium difficile R20291 8469070 YP_003219494.1 CDS CDR20291_3019 NC_013316.1 3602655 3603284 D hypothetical protein 3602655..3603284 Clostridium difficile R20291 8470187 YP_003219495.1 CDS CDR20291_3020 NC_013316.1 3603302 3603664 D transcriptional regulator 3603302..3603664 Clostridium difficile R20291 8469071 YP_003219496.1 CDS CDR20291_3021 NC_013316.1 3603770 3604267 D phosphatidylethanolamine-binding regulatory protein 3603770..3604267 Clostridium difficile R20291 8469072 YP_003219497.1 CDS CDR20291_3022 NC_013316.1 3604691 3605089 D hypothetical protein 3604691..3605089 Clostridium difficile R20291 8469073 YP_003219498.1 CDS CDR20291_3023 NC_013316.1 3605128 3606015 D transporter 3605128..3606015 Clostridium difficile R20291 8469074 YP_003219499.1 CDS secG NC_013316.1 3606399 3606623 R subunit of preprotein translocase complement(3606399..3606623) Clostridium difficile R20291 8469075 YP_003219500.1 CDS CDR20291_3025 NC_013316.1 3606741 3607247 R gcn5-related n-acetyltransferase; gcn5-related n-acetyltransferase complement(3606741..3607247) Clostridium difficile R20291 8470270 YP_003219501.1 CDS eno NC_013316.1 3607880 3609172 R enolase complement(3607880..3609172) Clostridium difficile R20291 8469076 YP_003219502.1 CDS gpmI NC_013316.1 3609760 3611292 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(3609760..3611292) Clostridium difficile R20291 8469691 YP_003219503.1 CDS tpiA NC_013316.1 3611301 3612044 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(3611301..3612044) Clostridium difficile R20291 8469833 YP_003219504.1 CDS pgk NC_013316.1 3612070 3613272 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3612070..3613272) Clostridium difficile R20291 8470390 YP_003219505.1 CDS gapB NC_013316.1 3613494 3614501 R glyceraldehyde-3-phosphate dehydrogenase 2 complement(3613494..3614501) Clostridium difficile R20291 8470069 YP_003219506.1 CDS cggR NC_013316.1 3614561 3615583 R central glycolytic genes regulator complement(3614561..3615583) Clostridium difficile R20291 8469790 YP_003219507.1 CDS glnF NC_013316.1 3616380 3617726 R RNA polymerase sigma-54 factor complement(3616380..3617726) Clostridium difficile R20291 8469582 YP_003219508.1 CDS xdhA3 NC_013316.1 3617878 3620439 R xanthine dehydrogenase, molybdenum binding and iron-sulfur binding subunits complement(3617878..3620439) Clostridium difficile R20291 8469813 YP_003219509.1 CDS CDR20291_3034 NC_013316.1 3620433 3621824 R D-hydantoinase complement(3620433..3621824) Clostridium difficile R20291 8470434 YP_003219510.1 CDS CDR20291_3035 NC_013316.1 3622107 3623216 R dihydroorotate dehydrogenase, catalytic subunit complement(3622107..3623216) Clostridium difficile R20291 8469077 YP_003219511.1 CDS pbuX NC_013316.1 3623408 3624760 R xanthine permease complement(3623408..3624760) Clostridium difficile R20291 8469078 YP_003219512.1 CDS CDR20291_3037 NC_013316.1 3624959 3626287 R in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; chlorohydrolase/aminohydrolase complement(3624959..3626287) Clostridium difficile R20291 8470054 YP_003219513.1 CDS CDR20291_3038 NC_013316.1 3626315 3627898 R D-aminoacylase complement(3626315..3627898) Clostridium difficile R20291 8469079 YP_003219514.1 CDS CDR20291_3039 NC_013316.1 3627914 3629101 R Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase complement(3627914..3629101) Clostridium difficile R20291 8469080 YP_003219515.1 CDS dpaL2 NC_013316.1 3629434 3630648 R catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase complement(3629434..3630648) Clostridium difficile R20291 8469081 YP_003219516.1 CDS CDR20291_3041 NC_013316.1 3631271 3631810 R hypothetical protein complement(3631271..3631810) Clostridium difficile R20291 8469681 YP_003219517.1 CDS CDR20291_3042 NC_013316.1 3631887 3633704 R sigma-54-dependent transcriptional regulator complement(3631887..3633704) Clostridium difficile R20291 8469082 YP_003219518.1 CDS tdcF NC_013316.1 3634100 3634477 R regulatory endoribonuclease complement(3634100..3634477) Clostridium difficile R20291 8469083 YP_003219519.1 CDS CDR20291_3044 NC_013316.1 3635328 3635813 D hypothetical protein 3635328..3635813 Clostridium difficile R20291 8470360 YP_003219520.1 CDS CDR20291_3045 NC_013316.1 3636013 3636552 R iron-sulfur flavoprotein complement(3636013..3636552) Clostridium difficile R20291 8469084 YP_003219521.1 CDS CDR20291_3046 NC_013316.1 3636545 3636958 R MerR family transcriptional regulator complement(3636545..3636958) Clostridium difficile R20291 8469085 YP_003219522.1 CDS CDR20291_3047 NC_013316.1 3636994 3638115 R oxidoreductase complement(3636994..3638115) Clostridium difficile R20291 8469086 YP_003219523.1 CDS CDR20291_3048 NC_013316.1 3638714 3640366 D cell surface protein 3638714..3640366 Clostridium difficile R20291 8469087 YP_003219524.1 CDS CDR20291_3049 NC_013316.1 3640663 3641412 D ABC transporter ATP-binding protein 3640663..3641412 Clostridium difficile R20291 8469088 YP_003219525.1 CDS CDR20291_3050 NC_013316.1 3641425 3643452 D salivaricin lantibiotic ABC transporter permease 3641425..3643452 Clostridium difficile R20291 8469089 YP_003219526.1 CDS CDR20291_3051 NC_013316.1 3643596 3645179 D sensor histidine kinase 3643596..3645179 Clostridium difficile R20291 8469090 YP_003219527.1 CDS CDR20291_3052 NC_013316.1 3645151 3645771 D salavaricin two-component response regulator 3645151..3645771 Clostridium difficile R20291 8469091 YP_003219528.1 CDS CDR20291_3053 NC_013316.1 3645959 3646885 R hypothetical protein complement(3645959..3646885) Clostridium difficile R20291 8469092 YP_003219529.1 CDS CDR20291_3054 NC_013316.1 3647495 3648415 D AraC family transcriptional regulator 3647495..3648415 Clostridium difficile R20291 8469093 YP_003219530.1 CDS CDR20291_3055 NC_013316.1 3648501 3650921 D excinuclease ABC subunit A 3648501..3650921 Clostridium difficile R20291 8469094 YP_003219531.1 CDS CDR20291_3056 NC_013316.1 3650921 3651943 D penicillin-binding protein 3650921..3651943 Clostridium difficile R20291 8469095 YP_003219532.1 CDS CDR20291_3057 NC_013316.1 3652058 3652804 D MerR family transcriptional regulator 3652058..3652804 Clostridium difficile R20291 8469096 YP_003219533.1 CDS cme NC_013316.1 3652836 3654140 D multidrug resistance protein 3652836..3654140 Clostridium difficile R20291 8469097 YP_003219534.1 CDS CDR20291_3059 NC_013316.1 3654622 3655590 R ABC transporter permease complement(3654622..3655590) Clostridium difficile R20291 8469598 YP_003219535.1 CDS CDR20291_3060 NC_013316.1 3655638 3656666 R ABC transporter permease complement(3655638..3656666) Clostridium difficile R20291 8469098 YP_003219536.1 CDS CDR20291_3061 NC_013316.1 3656666 3657511 R ABC transporter ATP-binding protein complement(3656666..3657511) Clostridium difficile R20291 8469099 YP_003219537.1 CDS CDR20291_3062 NC_013316.1 3657916 3659046 R two-component sensor histidine kinase complement(3657916..3659046) Clostridium difficile R20291 8469100 YP_003219538.1 CDS CDR20291_3063 NC_013316.1 3659043 3659714 R two-component response regulator complement(3659043..3659714) Clostridium difficile R20291 8469101 YP_003219539.1 CDS CDR20291_3064 NC_013316.1 3659928 3660578 R hypothetical protein complement(3659928..3660578) Clostridium difficile R20291 8469102 YP_003219540.1 CDS CDR20291_3065 NC_013316.1 3661426 3662019 D nitroreductase 3661426..3662019 Clostridium difficile R20291 8469103 YP_003219541.1 CDS CDR20291_3066 NC_013316.1 3662961 3664364 R Na+ driven multidrug efflux pump complement(3662961..3664364) Clostridium difficile R20291 8469104 YP_003219542.1 CDS CDR20291_3067 NC_013316.1 3664348 3664839 R MarR family transcriptional regulator complement(3664348..3664839) Clostridium difficile R20291 8469105 YP_003219543.1 CDS CDR20291_3068 NC_013316.1 3665155 3665670 D PadR family transcriptional regulator 3665155..3665670 Clostridium difficile R20291 8469106 YP_003219544.1 CDS CDR20291_3069 NC_013316.1 3665710 3666222 D hypothetical protein 3665710..3666222 Clostridium difficile R20291 8469107 YP_003219545.1 CDS CDR20291_3070 NC_013316.1 3666219 3666869 D hypothetical protein 3666219..3666869 Clostridium difficile R20291 8469108 YP_003219546.1 CDS CDR20291_3071 NC_013316.1 3667004 3667783 R hypothetical protein complement(3667004..3667783) Clostridium difficile R20291 8469109 YP_003219547.1 CDS CDR20291_3072 NC_013316.1 3667895 3668146 R hypothetical protein complement(3667895..3668146) Clostridium difficile R20291 8469110 YP_003219548.1 CDS CDR20291_3073 NC_013316.1 3668477 3669208 R AraC family transcriptional regulator complement(3668477..3669208) Clostridium difficile R20291 8469111 YP_003219549.1 CDS CDR20291_3074 NC_013316.1 3669546 3670307 R glycine/betaine ABC transporter ATP-binding protein complement(3669546..3670307) Clostridium difficile R20291 8469112 YP_003219550.1 CDS CDR20291_3075 NC_013316.1 3670323 3671858 R osmoprotectant ABC transporter substrate-binding/permease complement(3670323..3671858) Clostridium difficile R20291 8469113 YP_003219551.1 CDS snorO NC_013316.1 3672272 3674512 R nogalamycin resistance protein complement(3672272..3674512) Clostridium difficile R20291 8469114 YP_003219552.1 CDS CDR20291_3077 NC_013316.1 3675039 3675839 R hypothetical protein complement(3675039..3675839) Clostridium difficile R20291 8470290 YP_003219553.1 CDS hslO NC_013316.1 3676230 3677105 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(3676230..3677105) Clostridium difficile R20291 8469115 YP_003219554.1 CDS CDR20291_3079 NC_013316.1 3677390 3678247 R methyltransferase complement(3677390..3678247) Clostridium difficile R20291 8469889 YP_003219555.1 CDS CDR20291_3080 NC_013316.1 3678123 3678377 R small acid-soluble spore protein complement(3678123..3678377) Clostridium difficile R20291 8469116 YP_003219556.1 CDS CDR20291_3081 NC_013316.1 3678499 3679617 R amidohydrolase complement(3678499..3679617) Clostridium difficile R20291 8469117 YP_003219557.1 CDS sdaB NC_013316.1 3679823 3681016 R L-serine dehydratase complement(3679823..3681016) Clostridium difficile R20291 8469118 YP_003219558.1 CDS dapA1 NC_013316.1 3681339 3682220 D dihydrodipicolinate synthase 3681339..3682220 Clostridium difficile R20291 8470266 YP_003219559.1 CDS asd NC_013316.1 3682645 3683646 D aspartate-semialdehyde dehydrogenase 3682645..3683646 Clostridium difficile R20291 8469646 YP_003219560.1 CDS dapA2 NC_013316.1 3683763 3684650 D dihydrodipicolinate synthase 3683763..3684650 Clostridium difficile R20291 8469514 YP_003219561.1 CDS dapB1 NC_013316.1 3684717 3685466 D dihydrodipicolinate reductase 3684717..3685466 Clostridium difficile R20291 8469647 YP_003219562.1 CDS dapD NC_013316.1 3685690 3686406 D 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3685690..3686406 Clostridium difficile R20291 8469648 YP_003219563.1 CDS CDR20291_3088 NC_013316.1 3686677 3687681 R hypothetical protein complement(3686677..3687681) Clostridium difficile R20291 8469650 YP_003219564.1 CDS dapB2 NC_013316.1 3688143 3688862 D dihydrodipicolinate reductase 3688143..3688862 Clostridium difficile R20291 8469119 YP_003219565.1 CDS bclA2 NC_013316.1 3689444 3691084 R exosporium glycoprotein complement(3689444..3691084) Clostridium difficile R20291 8469649 YP_003219566.1 CDS hpt NC_013316.1 3691462 3692001 R hypoxanthine phosphoribosyltransferase complement(3691462..3692001) Clostridium difficile R20291 8469538 YP_003219567.1 CDS CDR20291_3092 NC_013316.1 3692329 3693636 R hypothetical protein complement(3692329..3693636) Clostridium difficile R20291 8469886 YP_003219568.1 CDS CDR20291_3093 NC_013316.1 3694061 3695836 R sigma-54 interacting protein complement(3694061..3695836) Clostridium difficile R20291 8469120 YP_003219569.1 CDS CDR20291_3094 NC_013316.1 3696048 3696617 R hypothetical protein complement(3696048..3696617) Clostridium difficile R20291 8469121 YP_003219570.1 CDS CDR20291_3095 NC_013316.1 3696801 3697436 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(3696801..3697436) Clostridium difficile R20291 8469122 YP_003219571.1 CDS CDR20291_3096 NC_013316.1 3698104 3698985 R hypothetical protein complement(3698104..3698985) Clostridium difficile R20291 8469123 YP_003219572.1 CDS prdF NC_013316.1 3699105 3700112 R proline racemase complement(3699105..3700112) Clostridium difficile R20291 8469124 YP_003219573.1 CDS CDR20291_3098 NC_013316.1 3700132 3700614 R hypothetical protein complement(3700132..3700614) Clostridium difficile R20291 8470103 YP_003219574.1 CDS CDR20291_3099 NC_013316.1 3700632 3701099 R hypothetical protein complement(3700632..3701099) Clostridium difficile R20291 8469125 YP_003219575.1 CDS CDR20291_3100 NC_013316.1 3701114 3701872 R hypothetical protein complement(3701114..3701872) Clostridium difficile R20291 8469126 YP_003219576.1 CDS prdB NC_013316.1 3701952 3702677 R proline reductase complement(join(3701952..3702224,3702228..3702677)) Clostridium difficile R20291 8469127 YP_003219577.1 CDS CDR20291_3102 NC_013316.1 3702715 3702999 R hypothetical protein complement(3702715..3702999) Clostridium difficile R20291 8470101 YP_003219578.1 CDS prdA NC_013316.1 3703080 3704960 R proline reductase subunit proprotein complement(3703080..3704960) Clostridium difficile R20291 8469128 YP_003219579.1 CDS prdR NC_013316.1 3705389 3707179 R sigma-54-dependent transcriptional activator complement(3705389..3707179) Clostridium difficile R20291 8470100 YP_003219580.1 CDS prdC NC_013316.1 3707950 3709263 R electron transfer protein complement(3707950..3709263) Clostridium difficile R20291 8470104 YP_003219581.1 CDS CDR20291_3106 NC_013316.1 3709652 3710416 R polysaccharide deacetylase complement(3709652..3710416) Clostridium difficile R20291 8470102 YP_003219582.1 CDS sspB NC_013316.1 3710689 3710910 D small acid-soluble spore protein B 3710689..3710910 Clostridium difficile R20291 8469129 YP_003219583.1 CDS CDR20291_3108 NC_013316.1 3711091 3711636 D hypothetical protein 3711091..3711636 Clostridium difficile R20291 8470344 YP_003219584.1 CDS CDR20291_3109 NC_013316.1 3711640 3712506 R hypothetical protein complement(3711640..3712506) Clostridium difficile R20291 8469130 YP_003219585.1 CDS CDR20291_3110 NC_013316.1 3712654 3712899 D hypothetical protein 3712654..3712899 Clostridium difficile R20291 8469131 YP_003219586.1 CDS folC NC_013316.1 3713013 3714311 R folylpolyglutamate synthase complement(3713013..3714311) Clostridium difficile R20291 8469132 YP_003219587.1 CDS CDR20291_3112 NC_013316.1 3714444 3715475 R serine protease complement(3714444..3715475) Clostridium difficile R20291 8469770 YP_003219588.1 CDS CDR20291_3113 NC_013316.1 3716521 3717231 R two-component response regulator complement(3716521..3717231) Clostridium difficile R20291 8469133 YP_003219589.1 CDS valS NC_013316.1 3717656 3720322 R valyl-tRNA synthetase complement(3717656..3720322) Clostridium difficile R20291 8469134 YP_003219590.1 CDS CDR20291_3115 NC_013316.1 3720961 3721788 R polysaccharide deacetylase complement(3720961..3721788) Clostridium difficile R20291 8470422 YP_003219591.1 CDS CDR20291_3116 NC_013316.1 3721836 3723290 R iron-only hydrogenase complement(3721836..3723290) Clostridium difficile R20291 8469135 YP_003219592.1 CDS CDR20291_3117 NC_013316.1 3723359 3724213 R hypothetical protein complement(3723359..3724213) Clostridium difficile R20291 8469136 YP_003219593.1 CDS phoU NC_013316.1 3724386 3725039 R phosphate transport system protein complement(3724386..3725039) Clostridium difficile R20291 8469137 YP_003219594.1 CDS phoT NC_013316.1 3725067 3725831 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(3725067..3725831) Clostridium difficile R20291 8470087 YP_003219595.1 CDS CDR20291_3120 NC_013316.1 3725850 3726674 R phosphateABC transporter permease complement(3725850..3726674) Clostridium difficile R20291 8470086 YP_003219596.1 CDS CDR20291_3121 NC_013316.1 3726676 3727593 R phosphate ABC transporter permease complement(3726676..3727593) Clostridium difficile R20291 8469138 YP_003219597.1 CDS CDR20291_3122 NC_013316.1 3727975 3728730 R hypothetical protein complement(3727975..3728730) Clostridium difficile R20291 8469139 YP_003219598.1 CDS CDR20291_3123 NC_013316.1 3729211 3730098 R ABC transporter ATP-binding protein complement(3729211..3730098) Clostridium difficile R20291 8469140 YP_003219599.1 CDS CDR20291_3124 NC_013316.1 3730243 3731418 R sensor protein complement(3730243..3731418) Clostridium difficile R20291 8469141 YP_003219600.1 CDS CDR20291_3125 NC_013316.1 3731394 3732092 R hypothetical protein complement(3731394..3732092) Clostridium difficile R20291 8469142 YP_003219601.1 CDS CDR20291_3126 NC_013316.1 3732474 3733154 R two-component response regulator complement(3732474..3733154) Clostridium difficile R20291 8469143 YP_003219602.1 CDS CDR20291_3127 NC_013316.1 3733204 3735219 R two-component sensor histidine kinase complement(3733204..3735219) Clostridium difficile R20291 8469144 YP_003219603.1 CDS CDR20291_3128 NC_013316.1 3735291 3735968 R two-component response regulator complement(3735291..3735968) Clostridium difficile R20291 8469145 YP_003219604.1 CDS CDR20291_3129 NC_013316.1 3736864 3737706 R phosphate ABC transporter substrate-binding protein complement(3736864..3737706) Clostridium difficile R20291 8469146 YP_003219605.1 CDS pepF NC_013316.1 3737958 3739742 R pz-peptidase; endopeptidase complement(3737958..3739742) Clostridium difficile R20291 8469147 YP_003219606.1 CDS CDR20291_3131 NC_013316.1 3739808 3740473 R cation transporter complement(3739808..3740473) Clostridium difficile R20291 8470062 YP_003219607.1 CDS CDR20291_3132 NC_013316.1 3740624 3740839 R hypothetical protein complement(3740624..3740839) Clostridium difficile R20291 8469148 YP_003219608.1 CDS CDR20291_3133 NC_013316.1 3740863 3741372 R hypothetical protein complement(3740863..3741372) Clostridium difficile R20291 8469149 YP_003219609.1 CDS feoA3 NC_013316.1 3741578 3741796 D ferrous iron transport protein A 3741578..3741796 Clostridium difficile R20291 8469150 YP_003219610.1 CDS feoB3 NC_013316.1 3741814 3743760 D ferrous iron transport protein B 3741814..3743760 Clostridium difficile R20291 8469726 YP_003219611.1 CDS CDR20291_3136 NC_013316.1 3743920 3744975 R phosphosugar isomerase complement(3743920..3744975) Clostridium difficile R20291 8469729 YP_003219612.1 CDS CDR20291_3137 NC_013316.1 3745023 3745790 R PTS system transporter subunit IID complement(3745023..3745790) Clostridium difficile R20291 8469151 YP_003219613.1 CDS CDR20291_3138 NC_013316.1 3745816 3746607 R PTS system transporter subunit IIC complement(3745816..3746607) Clostridium difficile R20291 8469152 YP_003219614.1 CDS CDR20291_3139 NC_013316.1 3746647 3747069 R PTS system transporter subunit IIA complement(3746647..3747069) Clostridium difficile R20291 8469153 YP_003219615.1 CDS CDR20291_3140 NC_013316.1 3747085 3747564 R PTS system transporter subunit IIB complement(3747085..3747564) Clostridium difficile R20291 8469154 YP_003219616.1 CDS CDR20291_3141 NC_013316.1 3747696 3750452 R transcription antiterminator complement(3747696..3750452) Clostridium difficile R20291 8469155 YP_003219617.1 CDS proC2 NC_013316.1 3751050 3751853 R pyrroline-5-carboxylate reductase complement(3751050..3751853) Clostridium difficile R20291 8469156 YP_003219618.1 CDS pflD NC_013316.1 3752178 3754547 R formate acetyltransferase complement(3752178..3754547) Clostridium difficile R20291 8470111 YP_003219619.1 CDS pflE NC_013316.1 3754552 3755460 R pyruvate formate-lyase 3 activating enzyme complement(3754552..3755460) Clostridium difficile R20291 8470066 YP_003219620.1 CDS CDR20291_3145 NC_013316.1 3755805 3756884 R protease complement(3755805..3756884) Clostridium difficile R20291 8470067 YP_003219621.1 CDS pgi NC_013316.1 3757040 3758389 R glucose-6-phosphate isomerase complement(3757040..3758389) Clostridium difficile R20291 8469157 YP_003219622.1 CDS CDR20291_3147 NC_013316.1 3758654 3760261 R sodium-dependent phosphate transporter complement(3758654..3760261) Clostridium difficile R20291 8470068 YP_003219623.1 CDS CDR20291_3148 NC_013316.1 3760406 3762112 R hypothetical protein complement(3760406..3762112) Clostridium difficile R20291 8469158 YP_003219624.1 CDS CDR20291_3149 NC_013316.1 3762058 3762375 R hypothetical protein complement(3762058..3762375) Clostridium difficile R20291 8469159 YP_003219625.1 CDS CDR20291_3150 NC_013316.1 3762380 3762745 R hypothetical protein complement(3762380..3762745) Clostridium difficile R20291 8469160 YP_003219626.1 CDS CDR20291_3151 NC_013316.1 3762826 3763875 R protein translocase complement(3762826..3763875) Clostridium difficile R20291 8469161 YP_003219627.1 CDS CDR20291_3152 NC_013316.1 3764116 3764700 R hypothetical protein complement(3764116..3764700) Clostridium difficile R20291 8469162 YP_003219628.1 CDS CDR20291_3153 NC_013316.1 3764715 3765158 R hypothetical protein complement(3764715..3765158) Clostridium difficile R20291 8469163 YP_003219629.1 CDS CDR20291_3154 NC_013316.1 3765159 3766031 R hypothetical protein complement(3765159..3766031) Clostridium difficile R20291 8469164 YP_003219630.1 CDS CDR20291_3155 NC_013316.1 3766084 3766443 R type IV pilin complement(3766084..3766443) Clostridium difficile R20291 8469165 YP_003219631.1 CDS CDR20291_3156 NC_013316.1 3766497 3767582 R type IV pilus-assembly protein complement(3766497..3767582) Clostridium difficile R20291 8469166 YP_003219632.1 CDS CDR20291_3157 NC_013316.1 3767753 3769132 R type IV pilus-assembly protein complement(3767753..3769132) Clostridium difficile R20291 8469167 YP_003219633.1 CDS CDR20291_3158 NC_013316.1 3769125 3769805 R hypothetical protein complement(3769125..3769805) Clostridium difficile R20291 8469168 YP_003219634.1 CDS CDR20291_3159 NC_013316.1 3770197 3771276 R ATP/GTP-binding protein complement(3770197..3771276) Clostridium difficile R20291 8469169 YP_003219635.1 CDS CDR20291_3160 NC_013316.1 3771854 3773224 D transporter 3771854..3773224 Clostridium difficile R20291 8469170 YP_003219636.1 CDS engB NC_013316.1 3773489 3774073 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(3773489..3774073) Clostridium difficile R20291 8469171 YP_003219637.1 CDS lon NC_013316.1 3774090 3776459 R ATP-dependent protease La complement(3774090..3776459) Clostridium difficile R20291 8469690 YP_003219638.1 CDS chrA NC_013316.1 3776633 3777145 D chromate transport protein 3776633..3777145 Clostridium difficile R20291 8469939 YP_003219639.1 CDS chrA' NC_013316.1 3777133 3777660 D chromate transport protein 3777133..3777660 Clostridium difficile R20291 8469589 YP_003219640.1 CDS clpX NC_013316.1 3777731 3778981 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3777731..3778981) Clostridium difficile R20291 8469590 YP_003219641.1 CDS clpP1 NC_013316.1 3779000 3779584 R ATP-dependent Clp protease proteolytic subunit complement(3779000..3779584) Clostridium difficile R20291 8469595 YP_003219642.1 CDS tig NC_013316.1 3779733 3781076 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3779733..3781076) Clostridium difficile R20291 8469593 YP_003219643.1 CDS CDR20291_3168 NC_013316.1 3781213 3781683 R phosphoesterase complement(3781213..3781683) Clostridium difficile R20291 8470378 YP_003219644.1 CDS rph NC_013316.1 3781683 3783032 R ribonuclease Ph complement(3781683..3783032) Clostridium difficile R20291 8469172 YP_003219645.1 CDS dnaL NC_013316.1 3783192 3785225 R DNA ligase complement(3783192..3785225) Clostridium difficile R20291 8470190 YP_003219646.1 CDS CDR20291_3171 NC_013316.1 3785402 3786340 R D-isomer specific 2-hydroxyacid dehydrogenase complement(3785402..3786340) Clostridium difficile R20291 8469677 YP_003219647.1 CDS CDR20291_3172 NC_013316.1 3786442 3786873 R hypothetical protein complement(3786442..3786873) Clostridium difficile R20291 8469173 YP_003219648.1 CDS CDR20291_3173 NC_013316.1 3787052 3788335 D transporter 3787052..3788335 Clostridium difficile R20291 8469174 YP_003219649.1 CDS hydN1 NC_013316.1 3788413 3788928 R electron transport protein complement(3788413..3788928) Clostridium difficile R20291 8469175 YP_003219650.1 CDS hydA NC_013316.1 3788928 3790304 R hydrogenase complement(3788928..3790304) Clostridium difficile R20291 8469893 YP_003219651.1 CDS hydN2 NC_013316.1 3790329 3790880 R electron transport protein complement(3790329..3790880) Clostridium difficile R20291 8469892 YP_003219652.1 CDS CDR20291_3177 NC_013316.1 3790938 3791111 R hypothetical protein complement(3790938..3791111) Clostridium difficile R20291 8469894 YP_003219653.1 CDS fdhD NC_013316.1 3791122 3791955 R formate dehydrogenase accessory protein complement(3791122..3791955) Clostridium difficile R20291 8469176 YP_003219654.1 CDS fdhF NC_013316.1 3792004 3794148 R formate dehydrogenase h complement(join(3792004..3793731,3793735..3794148)) Clostridium difficile R20291 8469721 YP_003219655.1 CDS CDR20291_3180 NC_013316.1 3794399 3795457 R hypothetical protein complement(3794399..3795457) Clostridium difficile R20291 8469722 YP_003219656.1 CDS CDR20291_3181 NC_013316.1 3795668 3796327 R two-component response regulator complement(3795668..3796327) Clostridium difficile R20291 8469177 YP_003219657.1 CDS CDR20291_3182 NC_013316.1 3796638 3797267 D hypothetical protein 3796638..3797267 Clostridium difficile R20291 8469178 YP_003219658.1 CDS CDR20291_3183 NC_013316.1 3797335 3798168 D hypothetical protein 3797335..3798168 Clostridium difficile R20291 8469179 YP_003219659.1 CDS CDR20291_3184 NC_013316.1 3798264 3799052 R hypothetical protein complement(3798264..3799052) Clostridium difficile R20291 8469180 YP_003219660.1 CDS CDR20291_3185 NC_013316.1 3799053 3799925 R ABC transporter ATP-binding protein complement(3799053..3799925) Clostridium difficile R20291 8469181 YP_003219661.1 CDS CDR20291_3186 NC_013316.1 3799940 3801718 R hypothetical protein complement(3799940..3801718) Clostridium difficile R20291 8469182 YP_003219662.1 CDS CDR20291_3187 NC_013316.1 3801795 3802376 R accessory gene regulator complement(3801795..3802376) Clostridium difficile R20291 8469183 YP_003219663.1 CDS CDR20291_3187A NC_013316.1 3802435 3802575 R autoinducer prepeptide complement(3802435..3802575) Clostridium difficile R20291 8469184 YP_003219664.1 CDS CDR20291_3188 NC_013316.1 3802587 3803903 R sensor histidine kinase virs; sensor histidine kinase virs complement(3802587..3803903) Clostridium difficile R20291 8469185 YP_003219665.1 CDS CDR20291_3189 NC_013316.1 3803897 3804664 R LytR family DNA-binding response regulator complement(3803897..3804664) Clostridium difficile R20291 8469186 YP_003219666.1 CDS CDR20291_3190 NC_013316.1 3805045 3805620 R hypothetical protein complement(3805045..3805620) Clostridium difficile R20291 8469187 YP_003219667.1 CDS CDR20291_3191 NC_013316.1 3805913 3806191 R hypothetical protein complement(3805913..3806191) Clostridium difficile R20291 8469188 YP_003219668.1 CDS CDR20291_3192 NC_013316.1 3806500 3807261 R hypothetical protein complement(3806500..3807261) Clostridium difficile R20291 8469189 YP_003219669.1 CDS bclA3 NC_013316.1 3807430 3809466 R exosporium glycoprotein complement(3807430..3809466) Clostridium difficile R20291 8469190 YP_003219670.1 CDS CDR20291_3194 NC_013316.1 3809545 3810621 R glycosyl transferase complement(3809545..3810621) Clostridium difficile R20291 8469539 YP_003219671.1 CDS clpP2 NC_013316.1 3810943 3811527 R ATP-dependent Clp protease proteolytic subunit complement(3810943..3811527) Clostridium difficile R20291 8469191 YP_003219672.1 CDS CDR20291_3196 NC_013316.1 3811524 3811982 R AraC family transcriptional regulator complement(3811524..3811982) Clostridium difficile R20291 8469594 YP_003219673.1 CDS CDR20291_3197 NC_013316.1 3812205 3813620 R GntR family transcriptional regulator complement(3812205..3813620) Clostridium difficile R20291 8469192 YP_003219674.1 CDS CDR20291_3198 NC_013316.1 3813735 3814403 D hypothetical protein 3813735..3814403 Clostridium difficile R20291 8469193 YP_003219675.1 CDS CDR20291_3199 NC_013316.1 3814579 3815097 R nitroreductase complement(3814579..3815097) Clostridium difficile R20291 8469194 YP_003219676.1 CDS CDR20291_3200 NC_013316.1 3815249 3815572 D transcriptional regulator 3815249..3815572 Clostridium difficile R20291 8469195 YP_003219677.1 CDS CDR20291_3201 NC_013316.1 3815577 3816161 R protease complement(3815577..3816161) Clostridium difficile R20291 8469196 YP_003219678.1 CDS CDR20291_3203 NC_013316.1 3817548 3819086 D ABC transporter ATP-binding protein 3817548..3819086 Clostridium difficile R20291 8469198 YP_003219679.1 CDS CDR20291_3204 NC_013316.1 3819358 3820194 R two-component system response regulator complement(3819358..3820194) Clostridium difficile R20291 8469199 YP_003219680.1 CDS CDR20291_3205 NC_013316.1 3820526 3821926 R multidrug efflux protein complement(3820526..3821926) Clostridium difficile R20291 8469200 YP_003219681.1 CDS CDR20291_3206 NC_013316.1 3822190 3822981 R ABC transporter permease complement(3822190..3822981) Clostridium difficile R20291 8469201 YP_003219682.1 CDS CDR20291_3207 NC_013316.1 3822981 3823844 R ABC transporter permease complement(3822981..3823844) Clostridium difficile R20291 8469202 YP_003219683.1 CDS CDR20291_3208 NC_013316.1 3823822 3824832 R ABC transporter ATP-binding protein complement(3823822..3824832) Clostridium difficile R20291 8469203 YP_003219684.1 CDS CDR20291_3209 NC_013316.1 3825520 3826476 D signaling protein 3825520..3826476 Clostridium difficile R20291 8469204 YP_003219685.1 CDS CDR20291_3210 NC_013316.1 3826877 3827425 R hypothetical protein complement(3826877..3827425) Clostridium difficile R20291 8469205 YP_003219686.1 CDS CDR20291_3211 NC_013316.1 3827527 3828225 R hypothetical protein complement(3827527..3828225) Clostridium difficile R20291 8469206 YP_003219687.1 CDS CDR20291_3212 NC_013316.1 3828761 3829828 R GTPase complement(3828761..3829828) Clostridium difficile R20291 8469207 YP_003219688.1 CDS CDR20291_3213 NC_013316.1 3829825 3830226 R hypothetical protein complement(3829825..3830226) Clostridium difficile R20291 8469208 YP_003219689.1 CDS CDR20291_3214 NC_013316.1 3831797 3832396 D hypothetical protein 3831797..3832396 Clostridium difficile R20291 8469209 YP_003219690.1 CDS CDR20291_3215 NC_013316.1 3832874 3834232 R RNA methyltransferase complement(3832874..3834232) Clostridium difficile R20291 8469210 YP_003219691.1 CDS pykF NC_013316.1 3834407 3836167 R pyruvate kinase complement(3834407..3836167) Clostridium difficile R20291 8469211 YP_003219692.1 CDS pfkA NC_013316.1 3836219 3837178 R 6-phosphofructokinase complement(3836219..3837178) Clostridium difficile R20291 8470133 YP_003219693.1 CDS dnaE NC_013316.1 3837387 3840956 R catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE complement(3837387..3840956) Clostridium difficile R20291 8470065 YP_003219694.1 CDS CDR20291_3219 NC_013316.1 3841113 3842060 R hypothetical protein complement(3841113..3842060) Clostridium difficile R20291 8469671 YP_003219695.1 CDS CDR20291_3220 NC_013316.1 3842077 3842502 R DNA repair protein complement(3842077..3842502) Clostridium difficile R20291 8469212 YP_003219696.1 CDS CDR20291_3221 NC_013316.1 3842571 3843689 R hypothetical protein complement(3842571..3843689) Clostridium difficile R20291 8469213 YP_003219697.1 CDS CDR20291_3222 NC_013316.1 3843689 3844546 R hypothetical protein complement(3843689..3844546) Clostridium difficile R20291 8469214 YP_003219698.1 CDS CDR20291_3223 NC_013316.1 3844577 3845290 R phosphoesterase complement(3844577..3845290) Clostridium difficile R20291 8469215 YP_003219699.1 CDS murB NC_013316.1 3845294 3846247 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(3845294..3846247) Clostridium difficile R20291 8469216 YP_003219700.1 CDS CDR20291_3225 NC_013316.1 3846481 3847317 R formate/nitrite transporter complement(3846481..3847317) Clostridium difficile R20291 8469995 YP_003219701.1 CDS cls NC_013316.1 3847569 3849050 D cardiolipin synthetase 3847569..3849050 Clostridium difficile R20291 8469217 YP_003219702.1 CDS hymA NC_013316.1 3849368 3849865 D iron-only hydrogenase, electron-transferring subunit 3849368..3849865 Clostridium difficile R20291 8469597 YP_003219703.1 CDS hymB NC_013316.1 3849882 3851768 D iron-only hydrogenase, electron-transferring subunit 3849882..3851768 Clostridium difficile R20291 8469895 YP_003219704.1 CDS hymC NC_013316.1 3851791 3853572 D iron-only hydrogenase, catalytic subunit 3851791..3853572 Clostridium difficile R20291 8469896 YP_003219705.1 CDS CDR20291_3230 NC_013316.1 3853712 3855508 R DNA mismatch repair protein complement(3853712..3855508) Clostridium difficile R20291 8469897 YP_003219706.1 CDS hprK NC_013316.1 3855722 3856651 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(3855722..3856651) Clostridium difficile R20291 8469218 YP_003219707.1 CDS uvrC NC_013316.1 3856651 3858468 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(3856651..3858468) Clostridium difficile R20291 8469884 YP_003219708.1 CDS uvrA NC_013316.1 3858727 3861552 R excinuclease ABC subunit A complement(3858727..3861552) Clostridium difficile R20291 8470419 YP_003219709.1 CDS uvrB NC_013316.1 3861571 3863565 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(3861571..3863565) Clostridium difficile R20291 8470417 YP_003219710.1 CDS CDR20291_3235 NC_013316.1 3863728 3864990 R nucleotide pyrophosphatase complement(3863728..3864990) Clostridium difficile R20291 8470418 YP_003219711.1 CDS CDR20291_3236 NC_013316.1 3865053 3866363 R ABC transporter substrate-binding protein complement(3865053..3866363) Clostridium difficile R20291 8469219 YP_003219712.1 CDS CDR20291_3237 NC_013316.1 3866388 3867248 R ABC transporter permease complement(3866388..3867248) Clostridium difficile R20291 8469220 YP_003219713.1 CDS CDR20291_3238 NC_013316.1 3867292 3868161 R ABC transporter permease complement(3867292..3868161) Clostridium difficile R20291 8469221 YP_003219714.1 CDS CDR20291_3239 NC_013316.1 3868145 3869215 R ABC transporter ATP-binding protein complement(3868145..3869215) Clostridium difficile R20291 8469222 YP_003219715.1 CDS CDR20291_3240 NC_013316.1 3874793 3875371 R siroheme synthase complement(3874793..3875371) Clostridium difficile R20291 8469431 YP_003219716.1 CDS hemB NC_013316.1 3875524 3876489 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(3875524..3876489) Clostridium difficile R20291 8469224 YP_003219717.1 CDS hemD NC_013316.1 3876506 3878005 R bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase complement(3876506..3878005) Clostridium difficile R20291 8469861 YP_003219718.1 CDS hemC NC_013316.1 3877995 3878900 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(3877995..3878900) Clostridium difficile R20291 8469863 YP_003219719.1 CDS cbiK NC_013316.1 3878930 3880408 R sirohydrochlorin cobaltochelatase complement(3878930..3880408) Clostridium difficile R20291 8469862 YP_003219720.1 CDS cbiJ NC_013316.1 3880427 3881179 R precorrin-6x reductase; cobalt-precorrin-6a reductase complement(3880427..3881179) Clostridium difficile R20291 8469570 YP_003219721.1 CDS cbiH NC_013316.1 3881176 3881901 R cobalt-precorrin-3b c(17)-methyltransferase complement(3881176..3881901) Clostridium difficile R20291 8469569 YP_003219722.1 CDS cbiG NC_013316.1 3881898 3883019 R catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG complement(3881898..3883019) Clostridium difficile R20291 8469568 YP_003219723.1 CDS cbiF NC_013316.1 3883003 3883755 R precorrin-4 C(11)-methyltransferase complement(3883003..3883755) Clostridium difficile R20291 8469567 YP_003219724.1 CDS cbiT NC_013316.1 3883748 3884323 R catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase complement(3883748..3884323) Clostridium difficile R20291 8469566 YP_003219725.1 CDS cbiE NC_013316.1 3884313 3884921 R catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase complement(3884313..3884921) Clostridium difficile R20291 8469576 YP_003219726.1 CDS cbiD NC_013316.1 3884918 3886144 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(3884918..3886144) Clostridium difficile R20291 8469565 YP_003219727.1 CDS cbiC NC_013316.1 3886153 3886785 R catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase complement(3886153..3886785) Clostridium difficile R20291 8469564 YP_003219728.1 CDS CDR20291_3253 NC_013316.1 3886773 3887660 R cobalamin biosynthesis kinase complement(3886773..3887660) Clostridium difficile R20291 8469563 YP_003219729.1 CDS cobD NC_013316.1 3887662 3888732 R pthreonine-phosphate decarboxylase complement(3887662..3888732) Clostridium difficile R20291 8469225 YP_003219730.1 CDS cbiB NC_013316.1 3888764 3889735 R cobalamin biosynthesis protein complement(3888764..3889735) Clostridium difficile R20291 8469603 YP_003219731.1 CDS cbiA NC_013316.1 3889736 3891151 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(3889736..3891151) Clostridium difficile R20291 8469562 YP_003219732.1 CDS cbiP NC_013316.1 3891151 3892650 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(3891151..3892650) Clostridium difficile R20291 8469561 YP_003219733.1 CDS CDR20291_3258 NC_013316.1 3893026 3893640 R cobalamin biosynthesis phosphoglycerate mutase complement(3893026..3893640) Clostridium difficile R20291 8469574 YP_003219734.1 CDS cobS NC_013316.1 3893660 3894433 R cobalamin synthase complement(3893660..3894433) Clostridium difficile R20291 8469226 YP_003219735.1 CDS cobU NC_013316.1 3894443 3895057 R bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase complement(3894443..3895057) Clostridium difficile R20291 8469604 YP_003219736.1 CDS cobT NC_013316.1 3895035 3896081 R nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(3895035..3896081) Clostridium difficile R20291 8469606 YP_003219737.1 CDS CDR20291_3262 NC_013316.1 3896886 3897758 D aldose epimerase 3896886..3897758 Clostridium difficile R20291 8469605 YP_003219738.1 CDS CDR20291_3263 NC_013316.1 3897955 3899142 R aminotransferas complement(3897955..3899142) Clostridium difficile R20291 8469227 YP_003219739.1 CDS CDR20291_3264 NC_013316.1 3899147 3900217 R peptidase complement(3899147..3900217) Clostridium difficile R20291 8469228 YP_003219740.1 CDS CDR20291_3265 NC_013316.1 3900227 3901549 R PTS system transporter subunit IIC complement(3900227..3901549) Clostridium difficile R20291 8469229 YP_003219741.1 CDS CDR20291_3266 NC_013316.1 3901581 3901916 R PTS system transporter subunit IIB complement(3901581..3901916) Clostridium difficile R20291 8469230 YP_003219742.1 CDS CDR20291_3267 NC_013316.1 3902013 3902318 R PTS system transporter subunit IIA complement(3902013..3902318) Clostridium difficile R20291 8469231 YP_003219743.1 CDS celM NC_013316.1 3902333 3903376 R metalloprotein; exoaminopeptidase complement(3902333..3903376) Clostridium difficile R20291 8469232 YP_003219744.1 CDS CDR20291_3269 NC_013316.1 3903379 3905280 R transcription antiterminator complement(3903379..3905280) Clostridium difficile R20291 8469581 YP_003219745.1 CDS gatY NC_013316.1 3905606 3906457 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase complement(3905606..3906457) Clostridium difficile R20291 8469233 YP_003219746.1 CDS agaS NC_013316.1 3906506 3907675 R tagatose-6-phosphate ketose/aldose isomerase complement(3906506..3907675) Clostridium difficile R20291 8469484 YP_003219747.1 CDS CDR20291_3272 NC_013316.1 3908137 3909054 D oxidoreductase 3908137..3909054 Clostridium difficile R20291 8469482 YP_003219748.1 CDS lacC NC_013316.1 3909183 3910112 R tagatose-6-phosphate kinase complement(3909183..3910112) Clostridium difficile R20291 8469234 YP_003219749.1 CDS CDR20291_3274 NC_013316.1 3910381 3911106 D GntR family transcriptional regulator 3910381..3911106 Clostridium difficile R20291 8469927 YP_003219750.1 CDS agaA NC_013316.1 3911222 3912343 D N-acetylglucosamine-6-phosphate deacetylase 3911222..3912343 Clostridium difficile R20291 8469235 YP_003219751.1 CDS CDR20291_3276 NC_013316.1 3913081 3913917 R transposase, mutator type; transposase, mutator type complement(3913081..3913917) Clostridium difficile R20291 8469481 YP_003219752.1 CDS CDR20291_3277 NC_013316.1 3914159 3914890 R hypothetical protein complement(3914159..3914890) Clostridium difficile R20291 8469236 YP_003219753.1 CDS CDR20291_3278 NC_013316.1 3915224 3916477 R hypothetical protein complement(3915224..3916477) Clostridium difficile R20291 8469237 YP_003219754.1 CDS CDR20291_3279 NC_013316.1 3916814 3917953 D regulatory protein 3916814..3917953 Clostridium difficile R20291 8469238 YP_003219755.1 CDS CDR20291_3280 NC_013316.1 3918286 3918861 D hypothetical protein 3918286..3918861 Clostridium difficile R20291 8469239 YP_003219756.1 CDS CDR20291_3281 NC_013316.1 3919255 3919812 D transposon Tn21 resolvase 3919255..3919812 Clostridium difficile R20291 8469240 YP_003219757.1 CDS CDR20291_3282 NC_013316.1 3920112 3920855 D hypothetical protein 3920112..3920855 Clostridium difficile R20291 8469241 YP_003219758.1 CDS CDR20291_3283 NC_013316.1 3921309 3921851 D hypothetical protein 3921309..3921851 Clostridium difficile R20291 8469242 YP_003219759.1 CDS CDR20291_3284 NC_013316.1 3921946 3923151 D phage portal protein 3921946..3923151 Clostridium difficile R20291 8469243 YP_003219760.1 CDS CDR20291_3285 NC_013316.1 3923680 3924123 R hypothetical protein complement(3923680..3924123) Clostridium difficile R20291 8469244 YP_003219761.1 CDS CDR20291_3286 NC_013316.1 3924341 3924784 R hypothetical protein complement(3924341..3924784) Clostridium difficile R20291 8469245 YP_003219762.1 CDS CDR20291_3287 NC_013316.1 3925313 3925975 R hypothetical protein complement(3925313..3925975) Clostridium difficile R20291 8469246 YP_003219763.1 CDS CDR20291_3288 NC_013316.1 3926007 3926549 R hypothetical protein complement(3926007..3926549) Clostridium difficile R20291 8469247 YP_003219764.1 CDS CDR20291_3289 NC_013316.1 3926999 3927610 R leucine-rich repeat protein complement(3926999..3927610) Clostridium difficile R20291 8469248 YP_003219765.1 CDS CDR20291_3290 NC_013316.1 3928087 3929301 R transposase mutator type complement(3928087..3929301) Clostridium difficile R20291 8469249 YP_003219766.1 CDS CDR20291_3291 NC_013316.1 3929488 3930645 R exported carboxy-terminal processing protease complement(3929488..3930645) Clostridium difficile R20291 8469250 YP_003219767.1 CDS CDR20291_3292 NC_013316.1 3930799 3931368 D 5-formyltetrahydrofolate cyclo-ligase 3930799..3931368 Clostridium difficile R20291 8469251 YP_003219768.1 CDS CDR20291_3293 NC_013316.1 3931550 3931984 R hypothetical protein complement(3931550..3931984) Clostridium difficile R20291 8469252 YP_003219769.1 CDS CDR20291_3294 NC_013316.1 3932192 3933286 R hypothetical protein complement(3932192..3933286) Clostridium difficile R20291 8469253 YP_003219770.1 CDS tkt' NC_013316.1 3933709 3934641 R transketolase, pyridine binding subunit complement(3933709..3934641) Clostridium difficile R20291 8469254 YP_003219771.1 CDS tkt NC_013316.1 3934643 3935470 R transketolase, thiamine disphosphate-binding subunit complement(3934643..3935470) Clostridium difficile R20291 8470382 YP_003219772.1 CDS CDR20291_3297 NC_013316.1 3935641 3936003 R regulator of cell growth complement(3935641..3936003) Clostridium difficile R20291 8470380 YP_003219773.1 CDS CDR20291_3298 NC_013316.1 3935993 3936280 R CopG family transcriptional regulator complement(3935993..3936280) Clostridium difficile R20291 8469255 YP_003219774.1 CDS alr NC_013316.1 3936313 3937470 R alanine racemase complement(3936313..3937470) Clostridium difficile R20291 8469256 YP_003219775.1 CDS CDR20291_3300 NC_013316.1 3937485 3938075 R lipoprotein complement(3937485..3938075) Clostridium difficile R20291 8469489 YP_003219776.1 CDS CDR20291_3301 NC_013316.1 3938096 3938557 R hypothetical protein complement(3938096..3938557) Clostridium difficile R20291 8469257 YP_003219777.1 CDS acpS NC_013316.1 3938572 3938952 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3938572..3938952) Clostridium difficile R20291 8469258 YP_003219778.1 CDS atpC NC_013316.1 3939414 3939674 R ATP synthase subunit epsilon complement(3939414..3939674) Clostridium difficile R20291 8469471 YP_003219779.1 CDS atpD NC_013316.1 3939677 3941071 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(3939677..3941071) Clostridium difficile R20291 8469527 YP_003219780.1 CDS atpG NC_013316.1 3941084 3941926 R ATP synthase subunit gamma complement(3941084..3941926) Clostridium difficile R20291 8469528 YP_003219781.1 CDS atpA NC_013316.1 3941990 3943492 R ATP synthase subunit alpha complement(3941990..3943492) Clostridium difficile R20291 8469531 YP_003219782.1 CDS atpH NC_013316.1 3943509 3944054 R ATP synthase subunit delta complement(3943509..3944054) Clostridium difficile R20291 8469525 YP_003219783.1 CDS atpF NC_013316.1 3944051 3944566 R ATP synthase subunit B complement(3944051..3944566) Clostridium difficile R20291 8469532 YP_003219784.1 CDS atpE NC_013316.1 3944671 3944931 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(3944671..3944931) Clostridium difficile R20291 8469530 YP_003219785.1 CDS atpB NC_013316.1 3945000 3945704 R ATP synthase subunit A complement(3945000..3945704) Clostridium difficile R20291 8469529 YP_003219786.1 CDS atpI NC_013316.1 3945707 3946093 R ATP synthase protein I complement(3945707..3946093) Clostridium difficile R20291 8469526 YP_003219787.1 CDS atpZ NC_013316.1 3946098 3946325 R ATP synthase protein complement(3946098..3946325) Clostridium difficile R20291 8469533 YP_003219788.1 CDS CDR20291_3313 NC_013316.1 3946510 3946947 R cytidine and deoxycytidylate deaminase complement(3946510..3946947) Clostridium difficile R20291 8469534 YP_003219789.1 CDS CDR20291_3314 NC_013316.1 3947173 3947988 R hypothetical protein complement(3947173..3947988) Clostridium difficile R20291 8469259 YP_003219790.1 CDS upp NC_013316.1 3948288 3948917 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(3948288..3948917) Clostridium difficile R20291 8469260 YP_003219791.1 CDS rpiB2 NC_013316.1 3948953 3949405 R ribose-5-phosphate isomerase 2 complement(3948953..3949405) Clostridium difficile R20291 8470413 YP_003219792.1 CDS CDR20291_3317 NC_013316.1 3949422 3949871 R low molecular weight protein-tyrosine-phosphatase complement(3949422..3949871) Clostridium difficile R20291 8470192 YP_003219793.1 CDS CDR20291_3318 NC_013316.1 3949888 3950949 R hypothetical protein complement(3949888..3950949) Clostridium difficile R20291 8469261 YP_003219794.1 CDS CDR20291_3319 NC_013316.1 3950957 3951637 R zinc transporter complement(3950957..3951637) Clostridium difficile R20291 8469262 YP_003219795.1 CDS prfA NC_013316.1 3951766 3952830 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(3951766..3952830) Clostridium difficile R20291 8469263 YP_003219796.1 CDS hemK NC_013316.1 3952874 3953722 R protein methyltransferase complement(3952874..3953722) Clostridium difficile R20291 8470105 YP_003219797.1 CDS CDR20291_3322 NC_013316.1 3953740 3954633 R hypothetical protein complement(3953740..3954633) Clostridium difficile R20291 8469864 YP_003219798.1 CDS rpmE NC_013316.1 3954778 3954978 R 50S ribosomal protein L31 complement(3954778..3954978) Clostridium difficile R20291 8469264 YP_003219799.1 CDS rho NC_013316.1 3955131 3956735 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(3955131..3956735) Clostridium difficile R20291 8470218 YP_003219800.1 CDS gtaB NC_013316.1 3957235 3958200 R utp--glucose-1-phosphate uridylyltransferase (general stress protein 33) complement(3957235..3958200) Clostridium difficile R20291 8470168 YP_003219801.1 CDS CDR20291_3326 NC_013316.1 3958314 3960206 R oligopeptidase complement(3958314..3960206) Clostridium difficile R20291 8469848 YP_003219802.1 CDS spoIIE NC_013316.1 3960557 3962929 R stage II sporulation protein e complement(3960557..3962929) Clostridium difficile R20291 8469265 YP_003219803.1 CDS CDR20291_3328 NC_013316.1 3963019 3963939 R exopolyphosphatase complement(3963019..3963939) Clostridium difficile R20291 8470311 YP_003219804.1 CDS CDR20291_3329 NC_013316.1 3964052 3964336 R septum formation protein complement(3964052..3964336) Clostridium difficile R20291 8469266 YP_003219805.1 CDS CDR20291_3330 NC_013316.1 3964342 3964875 R hypothetical protein complement(3964342..3964875) Clostridium difficile R20291 8469267 YP_003219806.1 CDS CDR20291_3331 NC_013316.1 3964876 3965130 R hypothetical protein complement(3964876..3965130) Clostridium difficile R20291 8469268 YP_003219807.1 CDS CDR20291_3332 NC_013316.1 3965192 3965443 R RNA-binding protein complement(3965192..3965443) Clostridium difficile R20291 8469269 YP_003219808.1 CDS hupA NC_013316.1 3965506 3965784 R DNA-binding protein HU complement(3965506..3965784) Clostridium difficile R20291 8469270 YP_003219809.1 CDS CDR20291_3334 NC_013316.1 3965873 3967348 R bifunctional tetrapyrrole (Corrin/Porphyrin) methylase/nucleoside triphosphate pyrophosphohydrolase complement(3965873..3967348) Clostridium difficile R20291 8469891 YP_003219810.1 CDS spoIIIF NC_013316.1 3967428 3969041 R stage V sporulation protein B complement(3967428..3969041) Clostridium difficile R20291 8469271 YP_003219811.1 CDS spoVT NC_013316.1 3969161 3969718 R stage V sporulation protein T complement(3969161..3969718) Clostridium difficile R20291 8470321 YP_003219812.1 CDS prsA NC_013316.1 3969824 3970789 R foldase lipoprotein complement(3969824..3970789) Clostridium difficile R20291 8470334 YP_003219813.1 CDS mfd NC_013316.1 3970850 3974236 R transcription-repair coupling factor complement(3970850..3974236) Clostridium difficile R20291 8470114 YP_003219814.1 CDS pth NC_013316.1 3974253 3974813 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(3974253..3974813) Clostridium difficile R20291 8469964 YP_003219815.1 CDS CDR20291_3340 NC_013316.1 3974827 3975477 R type IV prepilin leader peptidase complement(3974827..3975477) Clostridium difficile R20291 8470116 YP_003219816.1 CDS CDR20291_3341 NC_013316.1 3975579 3976361 R type IV prepilin leader peptidase complement(3975579..3976361) Clostridium difficile R20291 8469272 YP_003219817.1 CDS CDR20291_3342 NC_013316.1 3976342 3977424 R type IV pilus retraction protein complement(3976342..3977424) Clostridium difficile R20291 8469273 YP_003219818.1 CDS CDR20291_3343 NC_013316.1 3977524 3979062 R hypothetical protein complement(3977524..3979062) Clostridium difficile R20291 8469274 YP_003219819.1 CDS CDR20291_3344 NC_013316.1 3979083 3979610 R type IV pilin complement(3979083..3979610) Clostridium difficile R20291 8469275 YP_003219820.1 CDS CDR20291_3345 NC_013316.1 3979647 3980213 R type IV pilin complement(3979647..3980213) Clostridium difficile R20291 8469276 YP_003219821.1 CDS CDR20291_3346 NC_013316.1 3980240 3981148 R type IV pilus assembly protein complement(3980240..3981148) Clostridium difficile R20291 8469277 YP_003219822.1 CDS CDR20291_3347 NC_013316.1 3981141 3982853 R hypothetical protein complement(3981141..3982853) Clostridium difficile R20291 8469278 YP_003219823.1 CDS CDR20291_3348 NC_013316.1 3982868 3984076 R type IV pilus assembly protein complement(3982868..3984076) Clostridium difficile R20291 8469279 YP_003219824.1 CDS CDR20291_3349 NC_013316.1 3984088 3985773 R type IV pilus assembly protein complement(3984088..3985773) Clostridium difficile R20291 8469280 YP_003219825.1 CDS CDR20291_3350 NC_013316.1 3985915 3986436 R pilin complement(3985915..3986436) Clostridium difficile R20291 8469281 YP_003219826.1 CDS prs NC_013316.1 3987523 3988473 R ribose-phosphate pyrophosphokinase complement(3987523..3988473) Clostridium difficile R20291 8469282 YP_003219827.1 CDS glmU NC_013316.1 3988568 3989947 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(3988568..3989947) Clostridium difficile R20291 8470113 YP_003219828.1 CDS spoVG NC_013316.1 3990157 3990435 R stage V sporulation protein G complement(3990157..3990435) Clostridium difficile R20291 8469799 YP_003219829.1 CDS purR NC_013316.1 3990591 3991469 R pur operon repressor complement(3990591..3991469) Clostridium difficile R20291 8470332 YP_003219830.1 CDS murC NC_013316.1 3991688 3993040 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3991688..3993040 Clostridium difficile R20291 8470131 YP_003219831.1 CDS CDR20291_3356 NC_013316.1 3993096 3993893 R hypothetical protein complement(3993096..3993893) Clostridium difficile R20291 8469996 YP_003219832.1 CDS CDR20291_3357 NC_013316.1 3993963 3994916 R cation efflux protein complement(3993963..3994916) Clostridium difficile R20291 8469283 YP_003219833.1 CDS CDR20291_3358 NC_013316.1 3995045 3996226 R peptidase complement(3995045..3996226) Clostridium difficile R20291 8469284 YP_003219834.1 CDS CDR20291_3359 NC_013316.1 3996311 3997582 R hypothetical protein complement(3996311..3997582) Clostridium difficile R20291 8469285 YP_003219835.1 CDS ksgA NC_013316.1 3997648 3998517 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(3997648..3998517) Clostridium difficile R20291 8469286 YP_003219836.1 CDS CDR20291_3361 NC_013316.1 3998688 3999218 R DNA-binding protein complement(3998688..3999218) Clostridium difficile R20291 8469926 YP_003219837.1 CDS CDR20291_3362 NC_013316.1 3999410 4000477 R iron ABC transporter substrate-binding protein complement(3999410..4000477) Clostridium difficile R20291 8469287 YP_003219838.1 CDS CDR20291_3363 NC_013316.1 4001243 4002346 R iron ABC transporter solute-binding lipoprotein complement(4001243..4002346) Clostridium difficile R20291 8469288 YP_003219839.1 CDS CDR20291_3364 NC_013316.1 4002322 4004010 R iron ABC transporter permease complement(4002322..4004010) Clostridium difficile R20291 8469289 YP_003219840.1 CDS CDR20291_3365 NC_013316.1 4004028 4005023 R iron ABC transporter ATP-binding protein complement(4004028..4005023) Clostridium difficile R20291 8469290 YP_003219841.1 CDS CDR20291_3366 NC_013316.1 4005024 4005860 R phophoesterase complement(4005024..4005860) Clostridium difficile R20291 8469291 YP_003219842.1 CDS phnM NC_013316.1 4005864 4007033 R amidohydrolase complement(4005864..4007033) Clostridium difficile R20291 8469292 YP_003219843.1 CDS phnL NC_013316.1 4007034 4007765 R phosphonate ABC transporter ATP-binding protein complement(4007034..4007765) Clostridium difficile R20291 8470085 YP_003219844.1 CDS phnK NC_013316.1 4007788 4008654 R phosphonate ABC transporter ATP-binding protein complement(4007788..4008654) Clostridium difficile R20291 8470084 YP_003219845.1 CDS phnJ NC_013316.1 4008647 4009516 R phosphonate metabolism protein complement(4008647..4009516) Clostridium difficile R20291 8470083 YP_003219846.1 CDS phnI NC_013316.1 4009536 4010621 R phosphonate metabolism protein complement(4009536..4010621) Clostridium difficile R20291 8470082 YP_003219847.1 CDS phnH NC_013316.1 4010624 4011199 R phosphonate metabolism protein complement(4010624..4011199) Clostridium difficile R20291 8470081 YP_003219848.1 CDS phnG NC_013316.1 4011214 4011645 R phosphonate metabolism protein complement(4011214..4011645) Clostridium difficile R20291 8470080 YP_003219849.1 CDS CDR20291_3374 NC_013316.1 4011982 4012752 R deoxyribonuclease complement(4011982..4012752) Clostridium difficile R20291 8470079 YP_003219850.1 CDS metG NC_013316.1 4012782 4014719 R methionyl-tRNA synthetase complement(4012782..4014719) Clostridium difficile R20291 8469293 YP_003219851.1 CDS spmB NC_013316.1 4015115 4015636 R spore maturation protein B complement(4015115..4015636) Clostridium difficile R20291 8469960 YP_003219852.1 CDS spmA NC_013316.1 4015652 4016236 R spore maturation protein A complement(4015652..4016236) Clostridium difficile R20291 8470305 YP_003219853.1 CDS CDR20291_3378 NC_013316.1 4016368 4017798 D nicotinate phosphribosyltransferase 4016368..4017798 Clostridium difficile R20291 8470304 YP_003219854.1 CDS CDR20291_3379 NC_013316.1 4017835 4018263 D AsnC family transcriptional regulator 4017835..4018263 Clostridium difficile R20291 8469294 YP_003219855.1 CDS CDR20291_3380 NC_013316.1 4018451 4019155 R hypothetical protein complement(4018451..4019155) Clostridium difficile R20291 8469295 YP_003219856.1 CDS CDR20291_3381 NC_013316.1 4019178 4020011 R corrin/porphyrin methyltransferase complement(4019178..4020011) Clostridium difficile R20291 8469296 YP_003219857.1 CDS CDR20291_3382 NC_013316.1 4020012 4020758 R hypothetical protein complement(4020012..4020758) Clostridium difficile R20291 8469297 YP_003219858.1 CDS CDR20291_3383 NC_013316.1 4020836 4021729 R signal peptidase II complement(4020836..4021729) Clostridium difficile R20291 8469298 YP_003219859.1 CDS CDR20291_3384 NC_013316.1 4021726 4022661 R DNA polymerase III subunit delta complement(4021726..4022661) Clostridium difficile R20291 8469299 YP_003219860.1 CDS CDR20291_3385 NC_013316.1 4022664 4023368 R thymidylate kinase complement(4022664..4023368) Clostridium difficile R20291 8469300 YP_003219861.1 CDS speA NC_013316.1 4023484 4024893 R arginine decarboxylase complement(4023484..4024893) Clostridium difficile R20291 8469301 YP_003219862.1 CDS CDR20291_3387 NC_013316.1 4025048 4025239 R hypothetical protein complement(4025048..4025239) Clostridium difficile R20291 8470299 YP_003219863.1 CDS CDR20291_3388 NC_013316.1 4030509 4030790 R hypothetical protein complement(4030509..4030790) Clostridium difficile R20291 8469432 YP_003219864.1 CDS lysS NC_013316.1 4031012 4032541 R lysyl-tRNA synthetase complement(4031012..4032541) Clostridium difficile R20291 8469303 YP_003219865.1 CDS greA NC_013316.1 4032556 4033035 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(4032556..4033035) Clostridium difficile R20291 8469946 YP_003219866.1 CDS dusB NC_013316.1 4033144 4034112 R tRNA-dihydrouridine synthase complement(4033144..4034112) Clostridium difficile R20291 8469843 YP_003219867.1 CDS CDR20291_3392 NC_013316.1 4034249 4035019 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(4034249..4035019) Clostridium difficile R20291 8469684 YP_003219868.1 CDS CDR20291_3393 NC_013316.1 4035038 4035655 R hypothetical protein complement(4035038..4035655) Clostridium difficile R20291 8469304 YP_003219869.1 CDS CDR20291_3394 NC_013316.1 4035812 4036780 R peptidase complement(4035812..4036780) Clostridium difficile R20291 8469305 YP_003219870.1 CDS birA NC_013316.1 4036773 4037750 R BirA bifunctional protein [includes: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase complement(4036773..4037750) Clostridium difficile R20291 8469306 YP_003219871.1 CDS ftsH2 NC_013316.1 4038064 4040058 R cell division protein complement(4038064..4040058) Clostridium difficile R20291 8469553 YP_003219872.1 CDS CDR20291_3397 NC_013316.1 4040068 4041456 R ATPase complement(4040068..4041456) Clostridium difficile R20291 8469778 YP_003219873.1 CDS CDR20291_3398 NC_013316.1 4041639 4042067 R hypothetical protein complement(4041639..4042067) Clostridium difficile R20291 8469307 YP_003219874.1 CDS murI NC_013316.1 4042084 4042890 R glutamate racemase complement(4042084..4042890) Clostridium difficile R20291 8469308 YP_003219875.1 CDS CDR20291_3400 NC_013316.1 4043092 4043598 R spore cortex-lytic enzyme complement(4043092..4043598) Clostridium difficile R20291 8470001 YP_003219876.1 CDS spoIIR NC_013316.1 4043628 4044287 R stage II sporulation protein complement(4043628..4044287) Clostridium difficile R20291 8469309 YP_003219877.1 CDS CDR20291_3402 NC_013316.1 4044432 4045112 R GntR family transcriptional regulator complement(4044432..4045112) Clostridium difficile R20291 8470324 YP_003219878.1 CDS ipk NC_013316.1 4045096 4046016 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(4045096..4046016) Clostridium difficile R20291 8469310 YP_003219879.1 CDS CDR20291_3404 NC_013316.1 4046104 4047654 R cell wall hydrolase complement(4046104..4047654) Clostridium difficile R20291 8469907 YP_003219880.1 CDS veg NC_013316.1 4047748 4048014 R hypothetical protein complement(4047748..4048014) Clostridium difficile R20291 8469311 YP_003219881.1 CDS CDR20291_3406 NC_013316.1 4048162 4049022 R peptidase complement(4048162..4049022) Clostridium difficile R20291 8470428 YP_003219882.1 CDS CDR20291_3407 NC_013316.1 4049106 4050044 R dipeptidase complement(4049106..4050044) Clostridium difficile R20291 8469312 YP_003219883.1 CDS CDR20291_3408 NC_013316.1 4050154 4050315 R hypothetical protein complement(4050154..4050315) Clostridium difficile R20291 8469313 YP_003219884.1 CDS CDR20291_3409 NC_013316.1 4050325 4050822 R hypothetical protein complement(4050325..4050822) Clostridium difficile R20291 8469314 YP_003219885.1 CDS CDR20291_3410 NC_013316.1 4050937 4051647 R hypothetical protein complement(4050937..4051647) Clostridium difficile R20291 8469315 YP_003219886.1 CDS CDR20291_3411 NC_013316.1 4051823 4052353 R hypothetical protein complement(4051823..4052353) Clostridium difficile R20291 8469316 YP_003219887.1 CDS CDR20291_3412 NC_013316.1 4052370 4052600 R hypothetical protein complement(4052370..4052600) Clostridium difficile R20291 8469317 YP_003219888.1 CDS CDR20291_3413 NC_013316.1 4052615 4054024 R sodium:solute symporter complement(4052615..4054024) Clostridium difficile R20291 8469318 YP_003219889.1 CDS CDR20291_3414 NC_013316.1 4054135 4055388 R transporter complement(4054135..4055388) Clostridium difficile R20291 8469319 YP_003219890.1 CDS mdeA NC_013316.1 4055439 4056593 R methionine gamma-lyase complement(4055439..4056593) Clostridium difficile R20291 8469320 YP_003219891.1 CDS CDR20291_3416 NC_013316.1 4057152 4057721 R resolvase complement(4057152..4057721) Clostridium difficile R20291 8469957 YP_003219892.1 CDS CDR20291_3417 NC_013316.1 4057924 4058151 D hypothetical protein 4057924..4058151 Clostridium difficile R20291 8469321 YP_003219893.1 CDS CDR20291_3418 NC_013316.1 4058370 4059113 R hypothetical protein complement(4058370..4059113) Clostridium difficile R20291 8469322 YP_003219894.1 CDS CDR20291_3419 NC_013316.1 4059281 4060153 D hypothetical protein 4059281..4060153 Clostridium difficile R20291 8469323 YP_003219895.1 CDS CDR20291_3420 NC_013316.1 4060153 4060818 D pseudouridylate synthase 4060153..4060818 Clostridium difficile R20291 8469324 YP_003219896.1 CDS CDR20291_3421 NC_013316.1 4060839 4061696 D MerR family transcriptional regulator 4060839..4061696 Clostridium difficile R20291 8469325 YP_003219897.1 CDS CDR20291_3422 NC_013316.1 4061852 4064398 R ABC transporter permease complement(4061852..4064398) Clostridium difficile R20291 8469326 YP_003219898.1 CDS CDR20291_3423 NC_013316.1 4064398 4065084 R ABC transporter ATP-binding protein complement(4064398..4065084) Clostridium difficile R20291 8469327 YP_003219899.1 CDS CDR20291_3424 NC_013316.1 4065167 4066156 R two-component sensor histidine kinase complement(4065167..4066156) Clostridium difficile R20291 8469328 YP_003219900.1 CDS CDR20291_3425 NC_013316.1 4066143 4066829 R two-component response regulator complement(4066143..4066829) Clostridium difficile R20291 8469329 YP_003219901.1 CDS carB NC_013316.1 4067329 4070535 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(4067329..4070535) Clostridium difficile R20291 8469330 YP_003219902.1 CDS pyrAA1 NC_013316.1 4070728 4071822 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(4070728..4071822) Clostridium difficile R20291 8470136 YP_003219903.1 CDS carB NC_013316.1 4072035 4075241 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(4072035..4075241) Clostridium difficile R20291 8470134 YP_003219904.1 CDS pyrAA2 NC_013316.1 4075294 4076337 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(4075294..4076337) Clostridium difficile R20291 8470137 YP_003219905.1 CDS pyrF NC_013316.1 4076363 4077079 R orotidine 5'-phosphate decarboxylase complement(4076363..4077079) Clostridium difficile R20291 8470135 YP_003219906.1 CDS CDR20291_3431 NC_013316.1 4077455 4078090 R hypothetical protein complement(4077455..4078090) Clostridium difficile R20291 8470143 YP_003219907.1 CDS CDR20291_3432 NC_013316.1 4078114 4079028 R hypothetical protein complement(4078114..4079028) Clostridium difficile R20291 8469331 YP_003219908.1 CDS CDR20291_3433 NC_013316.1 4079628 4080857 D aminopeptidase 4079628..4080857 Clostridium difficile R20291 8469332 YP_003219909.1 CDS CDR20291_3434 NC_013316.1 4081062 4083443 R homocysteine S-methyltransferase complement(4081062..4083443) Clostridium difficile R20291 8469333 YP_003219910.1 CDS CDR20291_3435 NC_013316.1 4083415 4084140 R hypothetical protein complement(4083415..4084140) Clostridium difficile R20291 8469334 YP_003219911.1 CDS luxS NC_013316.1 4084130 4084585 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(4084130..4084585) Clostridium difficile R20291 8469335 YP_003219912.1 CDS CDR20291_3437 NC_013316.1 4084867 4086021 R two-component sensor histidine kinase complement(4084867..4086021) Clostridium difficile R20291 8469943 YP_003219913.1 CDS CDR20291_3438 NC_013316.1 4086038 4086730 R two-component response regulator complement(4086038..4086730) Clostridium difficile R20291 8469336 YP_003219914.1 CDS CDR20291_3439 NC_013316.1 4086864 4087580 R D-alanyl-D-alanine carboxypeptidase complement(4086864..4087580) Clostridium difficile R20291 8469337 YP_003219915.1 CDS CDR20291_3440 NC_013316.1 4087706 4088440 D ATPase 4087706..4088440 Clostridium difficile R20291 8469338 YP_003219916.1 CDS CDR20291_3441 NC_013316.1 4088725 4089576 R exported phosphoesterase complement(4088725..4089576) Clostridium difficile R20291 8469339 YP_003219917.1 CDS CDR20291_3442 NC_013316.1 4089602 4090540 R hypothetical protein complement(4089602..4090540) Clostridium difficile R20291 8469340 YP_003219918.1 CDS CDR20291_3443 NC_013316.1 4090643 4091293 R phosphatase complement(4090643..4091293) Clostridium difficile R20291 8469341 YP_003219919.1 CDS CDR20291_3444 NC_013316.1 4091443 4091631 R ferredoxin complement(4091443..4091631) Clostridium difficile R20291 8469342 YP_003219920.1 CDS CDR20291_3445 NC_013316.1 4091738 4092922 R amidohydrolase complement(4091738..4092922) Clostridium difficile R20291 8469343 YP_003219921.1 CDS CDR20291_3446 NC_013316.1 4093064 4093981 R hypothetical protein complement(4093064..4093981) Clostridium difficile R20291 8469344 YP_003219922.1 CDS CDR20291_3447 NC_013316.1 4094003 4094731 R ABC transporter ATP-binding protein complement(4094003..4094731) Clostridium difficile R20291 8469345 YP_003219923.1 CDS CDR20291_3448 NC_013316.1 4094927 4095127 R hypothetical protein complement(4094927..4095127) Clostridium difficile R20291 8469346 YP_003219924.1 CDS CDR20291_3449 NC_013316.1 4095252 4095632 R glyoxalase complement(4095252..4095632) Clostridium difficile R20291 8469347 YP_003219925.1 CDS CDR20291_3450 NC_013316.1 4095905 4097263 R multidrug resistance protein complement(4095905..4097263) Clostridium difficile R20291 8469348 YP_003219926.1 CDS CDR20291_3451 NC_013316.1 4097747 4098163 D hypothetical protein 4097747..4098163 Clostridium difficile R20291 8469349 YP_003219927.1 CDS CDR20291_3452 NC_013316.1 4098320 4098937 R hypothetical protein complement(4098320..4098937) Clostridium difficile R20291 8469350 YP_003219928.1 CDS CDR20291_3453 NC_013316.1 4099441 4102146 D collagen-binding surface protein 4099441..4102146 Clostridium difficile R20291 8469351 YP_003219929.1 CDS CDR20291_3454 NC_013316.1 4102371 4102694 D conjugative transposon protein 4102371..4102694 Clostridium difficile R20291 8469352 YP_003219930.1 CDS CDR20291_3455 NC_013316.1 4103708 4104166 D hypothetical protein 4103708..4104166 Clostridium difficile R20291 8469353 YP_003219931.1 CDS CDR20291_3456 NC_013316.1 4104191 4104733 D hypothetical protein 4104191..4104733 Clostridium difficile R20291 8469354 YP_003219932.1 CDS CDR20291_3457 NC_013316.1 4104769 4105296 D hypothetical protein 4104769..4105296 Clostridium difficile R20291 8469355 YP_003219933.1 CDS CDR20291_3458 NC_013316.1 4105406 4106800 D conjugative transposon FtsK_SpoIIIE-related protein 4105406..4106800 Clostridium difficile R20291 8469356 YP_003219934.1 CDS CDR20291_3459 NC_013316.1 4107080 4108201 D conjugative transposon replication initiation factor 4107080..4108201 Clostridium difficile R20291 8469357 YP_003219935.1 CDS CDR20291_3460 NC_013316.1 4108343 4108564 D conjugative transposon protein 4108343..4108564 Clostridium difficile R20291 8469358 YP_003219936.1 CDS CDR20291_3461 NC_013316.1 4108878 4109522 D chloramphenicol o-acetyltransferase 4108878..4109522 Clostridium difficile R20291 8469359 YP_003219937.1 CDS CDR20291_3462 NC_013316.1 4109808 4110305 D conjugative transposon protein 4109808..4110305 Clostridium difficile R20291 8469360 YP_003219938.1 CDS CDR20291_3463 NC_013316.1 4110321 4110824 D conjugative transposon protein 4110321..4110824 Clostridium difficile R20291 8469361 YP_003219939.1 CDS CDR20291_3464 NC_013316.1 4111313 4113745 D conjugative transposon protein 4111313..4113745 Clostridium difficile R20291 8469362 YP_003219940.1 CDS CDR20291_3465 NC_013316.1 4113745 4115880 D conjugative transposon protein 4113745..4115880 Clostridium difficile R20291 8469363 YP_003219941.1 CDS CDR20291_3466 NC_013316.1 4115877 4116884 D cell wall hydrolase 4115877..4116884 Clostridium difficile R20291 8469364 YP_003219942.1 CDS CDR20291_3467 NC_013316.1 4116900 4117793 D conjugative transposon protein 4116900..4117793 Clostridium difficile R20291 8469365 YP_003219943.1 CDS CDR20291_3468 NC_013316.1 4118006 4118863 D hypothetical protein 4118006..4118863 Clostridium difficile R20291 8469366 YP_003219944.1 CDS CDR20291_3469 NC_013316.1 4118935 4119522 D transcriptional regulator 4118935..4119522 Clostridium difficile R20291 8469367 YP_003219945.1 CDS CDR20291_3470 NC_013316.1 4119551 4120471 D ABC transporter ATP-binding protein 4119551..4120471 Clostridium difficile R20291 8469368 YP_003219946.1 CDS CDR20291_3471 NC_013316.1 4120468 4121151 D ABC transporter permease 4120468..4121151 Clostridium difficile R20291 8469369 YP_003219947.1 CDS CDR20291_3472 NC_013316.1 4121148 4121846 D ABC transporter permease 4121148..4121846 Clostridium difficile R20291 8469370 YP_003219948.1 CDS CDR20291_3473 NC_013316.1 4121858 4122769 D hypothetical protein 4121858..4122769 Clostridium difficile R20291 8469371 YP_003219949.1 CDS CDR20291_3474 NC_013316.1 4123650 4124078 D hypothetical protein 4123650..4124078 Clostridium difficile R20291 8469372 YP_003219950.1 CDS int-Tn NC_013316.1 4124193 4125374 D integrase 4124193..4125374 Clostridium difficile R20291 8469373 YP_003219951.1 CDS CDR20291_3476 NC_013316.1 4125714 4126526 R MerR family transcriptional regulator complement(4125714..4126526) Clostridium difficile R20291 8469904 YP_003219952.1 CDS CDR20291_3477 NC_013316.1 4126602 4129996 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(join(4126602..4127819,4129844..4129996)) Clostridium difficile R20291 8469374 YP_003219953.1 CDS CDR20291_3478 NC_013316.1 4127985 4129103 R transposase-like protein b complement(4127985..4129103) Clostridium difficile R20291 8469375 YP_003219954.1 CDS CDR20291_3479 NC_013316.1 4130479 4131396 R hypothetical protein complement(4130479..4131396) Clostridium difficile R20291 8469376 YP_003219955.1 CDS CDR20291_3480 NC_013316.1 4131652 4132035 D hypothetical protein 4131652..4132035 Clostridium difficile R20291 8469377 YP_003219956.1 CDS CDR20291_3481 NC_013316.1 4132191 4132640 R acetyltransferase complement(4132191..4132640) Clostridium difficile R20291 8469378 YP_003219957.1 CDS CDR20291_3482 NC_013316.1 4132818 4133186 R hypothetical protein complement(4132818..4133186) Clostridium difficile R20291 8469379 YP_003219958.1 CDS CDR20291_3483 NC_013316.1 4133335 4134201 R hypothetical protein complement(4133335..4134201) Clostridium difficile R20291 8469380 YP_003219959.1 CDS phnA NC_013316.1 4134771 4135115 R phosphonoacetate hydrolase complement(4134771..4135115) Clostridium difficile R20291 8469381 YP_003219960.1 CDS CDR20291_3485 NC_013316.1 4135304 4135921 R ABC transporter ATP-binding protein complement(4135304..4135921) Clostridium difficile R20291 8470078 YP_003219961.1 CDS CDR20291_3486 NC_013316.1 4135926 4138097 R ABC transporter permease complement(4135926..4138097) Clostridium difficile R20291 8469382 YP_003219962.1 CDS kdgA NC_013316.1 4138512 4139144 R 2-keto-3-deoxy-6-phospho-gluconate aldolase complement(4138512..4139144) Clostridium difficile R20291 8469383 YP_003219963.1 CDS CDR20291_3488 NC_013316.1 4139250 4140155 R dihydrodipicolinate synthase complement(4139250..4140155) Clostridium difficile R20291 8469919 YP_003219964.1 CDS CDR20291_3489 NC_013316.1 4140160 4140783 R sugar-phosphate isomerase complement(4140160..4140783) Clostridium difficile R20291 8469384 YP_003219965.1 CDS CDR20291_3490 NC_013316.1 4140817 4142088 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(4140817..4142088) Clostridium difficile R20291 8469385 YP_003219966.1 CDS CDR20291_3491 NC_013316.1 4142115 4142402 R PTS system, IIb component complement(4142115..4142402) Clostridium difficile R20291 8469386 YP_003219967.1 CDS CDR20291_3492 NC_013316.1 4142417 4144504 R transcription antiterminator complement(4142417..4144504) Clostridium difficile R20291 8469387 YP_003219968.1 CDS CDR20291_3493 NC_013316.1 4145071 4145925 R hypothetical protein complement(4145071..4145925) Clostridium difficile R20291 8469388 YP_003219969.1 CDS CDR20291_3494 NC_013316.1 4145957 4146469 R hypothetical protein complement(4145957..4146469) Clostridium difficile R20291 8469389 YP_003219970.1 CDS CDR20291_3495 NC_013316.1 4146462 4146686 R hypothetical protein complement(4146462..4146686) Clostridium difficile R20291 8469390 YP_003219971.1 CDS CDR20291_3496 NC_013316.1 4146746 4147699 R hypothetical protein complement(4146746..4147699) Clostridium difficile R20291 8469391 YP_003219972.1 CDS CDR20291_3497 NC_013316.1 4147727 4149115 R hypothetical protein complement(4147727..4149115) Clostridium difficile R20291 8469392 YP_003219973.1 CDS CDR20291_3498 NC_013316.1 4149388 4150269 D LysR family transcriptional regulator 4149388..4150269 Clostridium difficile R20291 8469393 YP_003219974.1 CDS CDR20291_3499 NC_013316.1 4150456 4151448 R carbohydrate kinase complement(4150456..4151448) Clostridium difficile R20291 8469394 YP_003219975.1 CDS CDR20291_3500 NC_013316.1 4151453 4152208 R hypothetical protein complement(4151453..4152208) Clostridium difficile R20291 8469395 YP_003219976.1 CDS CDR20291_3501 NC_013316.1 4152258 4153367 R selenocysteine synthase complement(4152258..4153367) Clostridium difficile R20291 8469396 YP_003219977.1 CDS CDR20291_3502 NC_013316.1 4153385 4154518 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(4153385..4154518) Clostridium difficile R20291 8469397 YP_003219978.1 CDS CDR20291_3503 NC_013316.1 4154520 4155614 R hypothetical protein complement(4154520..4155614) Clostridium difficile R20291 8469398 YP_003219979.1 CDS CDR20291_3504 NC_013316.1 4155751 4157052 R PTS system transporter subunit IIC complement(4155751..4157052) Clostridium difficile R20291 8469399 YP_003219980.1 CDS CDR20291_3505 NC_013316.1 4157276 4157977 R GntR family transcriptional regulator complement(4157276..4157977) Clostridium difficile R20291 8469400 YP_003219981.1 CDS CDR20291_3506 NC_013316.1 4158190 4158507 R PTS system transporter subunit IIA complement(4158190..4158507) Clostridium difficile R20291 8469401 YP_003219982.1 CDS CDR20291_3507 NC_013316.1 4158555 4158866 R PTS system transporter subunit IIB complement(4158555..4158866) Clostridium difficile R20291 8469402 YP_003219983.1 CDS CDR20291_3508 NC_013316.1 4159015 4159494 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(4159015..4159494) Clostridium difficile R20291 8469403 YP_003219984.1 CDS CDR20291_3509 NC_013316.1 4159562 4161664 R signaling protein complement(4159562..4161664) Clostridium difficile R20291 8469404 YP_003219985.1 CDS CDR20291_3510 NC_013316.1 4161677 4162474 R metallo-beta-lactamase complement(4161677..4162474) Clostridium difficile R20291 8469405 YP_003219986.1 CDS CDR20291_3511 NC_013316.1 4162576 4163982 R peptidase complement(4162576..4163982) Clostridium difficile R20291 8469406 YP_003219987.1 CDS CDR20291_3512 NC_013316.1 4164164 4165222 D hypothetical protein 4164164..4165222 Clostridium difficile R20291 8469407 YP_003219988.1 CDS CDR20291_3513 NC_013316.1 4165231 4166223 D acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 4165231..4166223 Clostridium difficile R20291 8469408 YP_003219989.1 CDS purA NC_013316.1 4167276 4168565 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(4167276..4168565) Clostridium difficile R20291 8469409 YP_003219990.1 CDS CDR20291_3515 NC_013316.1 4168647 4168955 R hypothetical protein complement(4168647..4168955) Clostridium difficile R20291 8470122 YP_003219991.1 CDS dnaB NC_013316.1 4169160 4170488 R replicative DNA helicase complement(4169160..4170488) Clostridium difficile R20291 8469410 YP_003219992.1 CDS rplI NC_013316.1 4170507 4170956 R 50S ribosomal protein L9 complement(4170507..4170956) Clostridium difficile R20291 8469670 YP_003219993.1 CDS CDR20291_3518 NC_013316.1 4170957 4172951 R RNA/single-stranded DNA exonuclease complement(4170957..4172951) Clostridium difficile R20291 8470199 YP_003219994.1 CDS CDR20291_3519 NC_013316.1 4172962 4173888 R hypothetical protein complement(4172962..4173888) Clostridium difficile R20291 8469411 YP_003219995.1 CDS CDR20291_3520 NC_013316.1 4173926 4174246 R hypothetical protein complement(4173926..4174246) Clostridium difficile R20291 8469412 YP_003219996.1 CDS rpsR NC_013316.1 4174389 4174616 R 30S ribosomal protein S18 complement(4174389..4174616) Clostridium difficile R20291 8469413 YP_003219997.1 CDS ssb NC_013316.1 4174635 4175069 R single-strand binding protein complement(4174635..4175069) Clostridium difficile R20291 8470245 YP_003219998.1 CDS rpsF NC_013316.1 4175106 4175384 R 30S ribosomal protein S6 complement(4175106..4175384) Clostridium difficile R20291 8470341 YP_003219999.1 CDS CDR20291_3524 NC_013316.1 4175598 4176794 R amino acid aminotransferase complement(4175598..4176794) Clostridium difficile R20291 8470233 YP_003220000.1 CDS CDR20291_3525 NC_013316.1 4176897 4177082 R hypothetical protein complement(4176897..4177082) Clostridium difficile R20291 8469414 YP_003220001.1 CDS CDR20291_3526 NC_013316.1 4177097 4177360 R hypothetical protein complement(4177097..4177360) Clostridium difficile R20291 8469415 YP_003220002.1 CDS CDR20291_3527 NC_013316.1 4177433 4178065 R hypothetical protein complement(4177433..4178065) Clostridium difficile R20291 8469416 YP_003220003.1 CDS CDR20291_3528 NC_013316.1 4178140 4179456 R transcriptional regulator complement(4178140..4179456) Clostridium difficile R20291 8469417 YP_003220004.1 CDS CDR20291_3529 NC_013316.1 4179692 4180267 D hypothetical protein 4179692..4180267 Clostridium difficile R20291 8469418 YP_003220005.1 CDS CDR20291_3530 NC_013316.1 4180401 4181543 R selenocysteine lyase complement(4180401..4181543) Clostridium difficile R20291 8469419 YP_003220006.1 CDS spo0J NC_013316.1 4181576 4182439 R stage 0 sporulation protein J complement(4181576..4182439) Clostridium difficile R20291 8469420 YP_003220007.1 CDS soj NC_013316.1 4182441 4183295 R sporulation initiation inhibitor complement(4182441..4183295) Clostridium difficile R20291 8470307 YP_003220008.1 CDS CDR20291_3533 NC_013316.1 4183349 4184134 R stage 0 sporulation protein complement(4183349..4184134) Clostridium difficile R20291 8470292 YP_003220009.1 CDS gidB NC_013316.1 4184309 4185037 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4184309..4185037) Clostridium difficile R20291 8469421 YP_003220010.1 CDS gidA NC_013316.1 4185021 4186916 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(4185021..4186916) Clostridium difficile R20291 8469422 YP_003220011.1 CDS trmE NC_013316.1 4187011 4188399 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(4187011..4188399) Clostridium difficile R20291 8469804 YP_003220012.1 CDS jag NC_013316.1 4188502 4189062 R SpoIIIJ-associated protein complement(4188502..4189062) Clostridium difficile R20291 8470394 YP_003220013.1 CDS oxaA1 NC_013316.1 4189100 4189807 R sporulation membrane protein complement(4189100..4189807) Clostridium difficile R20291 8469917 YP_003220014.1 CDS CDR20291_3539 NC_013316.1 4189839 4190024 R hypothetical protein complement(4189839..4190024) Clostridium difficile R20291 8470047 YP_003220015.1 CDS rnpA NC_013316.1 4190122 4190466 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(4190122..4190466) Clostridium difficile R20291 8469423 YP_003220016.1 CDS rpmH NC_013316.1 4190544 4190681 R 50S ribosomal protein L34 complement(4190544..4190681) Clostridium difficile R20291 8470186 CDR20291_t11 tRNA CDR20291_t11 NC_013316.1 19761 19852 D tRNA-Ser 19761..19852 Clostridium difficile R20291 9519058 CDR20291_t22 tRNA CDR20291_t22 NC_013316.1 30023 30097 D tRNA-Asn 30023..30097 Clostridium difficile R20291 9519052 CDR20291_t33 tRNA CDR20291_t33 NC_013316.1 30104 30189 D tRNA-Leu 30104..30189 Clostridium difficile R20291 9519079 CDR20291_t44 tRNA CDR20291_t44 NC_013316.1 30205 30280 D tRNA-Met 30205..30280 Clostridium difficile R20291 9519025 CDR20291_t55 tRNA CDR20291_t55 NC_013316.1 30288 30362 D tRNA-Glu 30288..30362 Clostridium difficile R20291 9519032 CDR20291_t62 tRNA CDR20291_t62 NC_013316.1 30372 30445 D tRNA-Gly 30372..30445 Clostridium difficile R20291 9519039 CDR20291_t63 tRNA CDR20291_t63 NC_013316.1 30451 30526 D tRNA-Val 30451..30526 Clostridium difficile R20291 9519043 CDR20291_t64 tRNA CDR20291_t64 NC_013316.1 30532 30608 D tRNA-Asp 30532..30608 Clostridium difficile R20291 9519044 CDR20291_t65 tRNA CDR20291_t65 NC_013316.1 30618 30692 D tRNA-Thr 30618..30692 Clostridium difficile R20291 9519045 CDR20291_t01 tRNA CDR20291_t01 NC_013316.1 30707 30791 D tRNA-Tyr 30707..30791 Clostridium difficile R20291 9519046 CDR20291_t02 tRNA CDR20291_t02 NC_013316.1 30800 30883 D tRNA-Leu 30800..30883 Clostridium difficile R20291 9519059 CDR20291_t03 tRNA CDR20291_t03 NC_013316.1 30913 30989 D tRNA-Arg 30913..30989 Clostridium difficile R20291 9519060 CDR20291_t04 tRNA CDR20291_t04 NC_013316.1 30997 31072 D tRNA-Gln 30997..31072 Clostridium difficile R20291 9519061 CDR20291_t05 tRNA CDR20291_t05 NC_013316.1 31161 31249 D tRNA-Ser 31161..31249 Clostridium difficile R20291 9519062 CDR20291_t06 tRNA CDR20291_t06 NC_013316.1 31253 31328 D tRNA-Phe 31253..31328 Clostridium difficile R20291 9519063 CDR20291_t07 tRNA CDR20291_t07 NC_013316.1 31335 31411 D tRNA-Met 31335..31411 Clostridium difficile R20291 9519064 CDR20291_t08 tRNA CDR20291_t08 NC_013316.1 31423 31499 D tRNA-Met 31423..31499 Clostridium difficile R20291 9519065 CDR20291_t09 tRNA CDR20291_t09 NC_013316.1 31523 31599 D tRNA-Pro 31523..31599 Clostridium difficile R20291 9519066 CDR20291_t10 tRNA CDR20291_t10 NC_013316.1 31607 31683 D tRNA-His 31607..31683 Clostridium difficile R20291 9519067 CDR20291_t12 tRNA CDR20291_t12 NC_013316.1 31692 31767 D tRNA-Lys 31692..31767 Clostridium difficile R20291 9519068 CDR20291_t13 tRNA CDR20291_t13 NC_013316.1 31775 31848 D tRNA-Cys 31775..31848 Clostridium difficile R20291 9519069 CDR20291_t14 tRNA CDR20291_t14 NC_013316.1 31855 31929 D tRNA-Asn 31855..31929 Clostridium difficile R20291 9519070 CDR20291_t15 tRNA CDR20291_t15 NC_013316.1 31935 32020 D tRNA-Leu 31935..32020 Clostridium difficile R20291 9519071 CDR20291_t16 tRNA CDR20291_t16 NC_013316.1 32036 32111 D tRNA-Met 32036..32111 Clostridium difficile R20291 9519072 CDR20291_t17 tRNA CDR20291_t17 NC_013316.1 32119 32193 D tRNA-Glu 32119..32193 Clostridium difficile R20291 9519073 CDR20291_t18 tRNA CDR20291_t18 NC_013316.1 32203 32276 D tRNA-Gly 32203..32276 Clostridium difficile R20291 9519074 CDR20291_t19 tRNA CDR20291_t19 NC_013316.1 32282 32357 D tRNA-Val 32282..32357 Clostridium difficile R20291 9519075 CDR20291_t20 tRNA CDR20291_t20 NC_013316.1 32363 32439 D tRNA-Asp 32363..32439 Clostridium difficile R20291 9519076 CDR20291_t21 tRNA CDR20291_t21 NC_013316.1 32449 32523 D tRNA-Thr 32449..32523 Clostridium difficile R20291 9519077 CDR20291_t23 tRNA CDR20291_t23 NC_013316.1 32538 32622 D tRNA-Tyr 32538..32622 Clostridium difficile R20291 9519078 CDR20291_t24 tRNA CDR20291_t24 NC_013316.1 32632 32715 D tRNA-Leu 32632..32715 Clostridium difficile R20291 9519080 CDR20291_t25 tRNA CDR20291_t25 NC_013316.1 32739 32813 D tRNA-Gly 32739..32813 Clostridium difficile R20291 9519081 CDR20291_t26 tRNA CDR20291_t26 NC_013316.1 32838 32914 D tRNA-Arg 32838..32914 Clostridium difficile R20291 9519082 CDR20291_t27 tRNA CDR20291_t27 NC_013316.1 32924 32999 D tRNA-Gln 32924..32999 Clostridium difficile R20291 9519018 CDR20291_t28 tRNA CDR20291_t28 NC_013316.1 33008 33083 D tRNA-Lys 33008..33083 Clostridium difficile R20291 9519019 CDR20291_t29 tRNA CDR20291_t29 NC_013316.1 33086 33174 D tRNA-Ser 33086..33174 Clostridium difficile R20291 9519020 CDR20291_t30 tRNA CDR20291_t30 NC_013316.1 33178 33253 D tRNA-Phe 33178..33253 Clostridium difficile R20291 9519021 CDR20291_t31 tRNA CDR20291_t31 NC_013316.1 33260 33336 D tRNA-Met 33260..33336 Clostridium difficile R20291 9519022 CDR20291_t32 tRNA CDR20291_t32 NC_013316.1 33348 33424 D tRNA-Met 33348..33424 Clostridium difficile R20291 9519023 CDR20291_t34 tRNA CDR20291_t34 NC_013316.1 33442 33518 D tRNA-His 33442..33518 Clostridium difficile R20291 9519024 CDR20291_t35 tRNA CDR20291_t35 NC_013316.1 33527 33602 D tRNA-Lys 33527..33602 Clostridium difficile R20291 9519026 CDR20291_t36 tRNA CDR20291_t36 NC_013316.1 33610 33683 D tRNA-Cys 33610..33683 Clostridium difficile R20291 9519027 CDR20291_t37 tRNA CDR20291_t37 NC_013316.1 33691 33767 D tRNA-Arg 33691..33767 Clostridium difficile R20291 9519028 CDR20291_t38 tRNA CDR20291_t38 NC_013316.1 33780 33855 D tRNA-Val 33780..33855 Clostridium difficile R20291 9519029 CDR20291_t39 tRNA CDR20291_t39 NC_013316.1 129461 129536 D tRNA-Ala 129461..129536 Clostridium difficile R20291 9519049 CDR20291_t40 tRNA CDR20291_t40 NC_013316.1 132935 133011 D tRNA-Met 132935..133011 Clostridium difficile R20291 9519050 CDR20291_t41 tRNA CDR20291_t41 NC_013316.1 144112 144187 D tRNA-Ala 144112..144187 Clostridium difficile R20291 9519054 CDR20291_t42 tRNA CDR20291_t42 NC_013316.1 147711 147785 D tRNA-Asn 147711..147785 Clostridium difficile R20291 9519053 CDR20291_t43 tRNA CDR20291_t43 NC_013316.1 147791 147876 D tRNA-Leu 147791..147876 Clostridium difficile R20291 9519030 CDR20291_t45 tRNA CDR20291_t45 NC_013316.1 147892 147967 D tRNA-Met 147892..147967 Clostridium difficile R20291 9519031 CDR20291_t46 tRNA CDR20291_t46 NC_013316.1 147975 148049 D tRNA-Glu 147975..148049 Clostridium difficile R20291 9519033 CDR20291_t47 tRNA CDR20291_t47 NC_013316.1 148064 148137 D tRNA-Gly 148064..148137 Clostridium difficile R20291 9519034 CDR20291_t48 tRNA CDR20291_t48 NC_013316.1 148143 148218 D tRNA-Val 148143..148218 Clostridium difficile R20291 9519035 CDR20291_t49 tRNA CDR20291_t49 NC_013316.1 148224 148300 D tRNA-Asp 148224..148300 Clostridium difficile R20291 9519036 CDR20291_t50 tRNA CDR20291_t50 NC_013316.1 148311 148385 D tRNA-Gly 148311..148385 Clostridium difficile R20291 9519037 CDR20291_t51 tRNA CDR20291_t51 NC_013316.1 148395 148468 D tRNA-Arg 148395..148468 Clostridium difficile R20291 9519038 CDR20291_t52 tRNA CDR20291_t52 NC_013316.1 831769 831859 D tRNA-Ser 831769..831859 Clostridium difficile R20291 9519056 CDR20291_t53 tRNA CDR20291_t53 NC_013316.1 1092816 1092889 D tRNA-Gly 1092816..1092889 Clostridium difficile R20291 9519051 CDR20291_t54 tRNA CDR20291_t54 NC_013316.1 1181950 1182032 R tRNA-Leu complement(1181950..1182032) Clostridium difficile R20291 9519055 CDR20291_t56 tRNA CDR20291_t56 NC_013316.1 1833473 1833553 D tRNA-Leu 1833473..1833553 Clostridium difficile R20291 9519057 CDR20291_t57 tRNA CDR20291_t57 NC_013316.1 3063163 3063237 R tRNA-Thr complement(3063163..3063237) Clostridium difficile R20291 9519047 CDR20291_t58 tRNA CDR20291_t58 NC_013316.1 4166607 4166681 R tRNA-Thr complement(4166607..4166681) Clostridium difficile R20291 9519048 CDR20291_t59 tRNA CDR20291_t59 NC_013316.1 4166715 4166790 R tRNA-Val complement(4166715..4166790) Clostridium difficile R20291 9519040 CDR20291_t60 tRNA CDR20291_t60 NC_013316.1 4166795 4166869 R tRNA-Glu complement(4166795..4166869) Clostridium difficile R20291 9519041 CDR20291_t61 tRNA CDR20291_t61 NC_013316.1 4166876 4166951 R tRNA-Lys complement(4166876..4166951) Clostridium difficile R20291 9519042 CDR20291_r27 rRNA CDR20291_r27 NC_013316.1 10716 12345 D 16S ribosomal RNA 10716..12345 Clostridium difficile R20291 8470276 CDR20291_r18 rRNA CDR20291_r18 NC_013316.1 12598 15548 D 23S ribosomal RNA 12598..15548 Clostridium difficile R20291 8469424 CDR20291_r19 rRNA CDR20291_r19 NC_013316.1 15610 15726 D 5S ribosomal RNA 15610..15726 Clostridium difficile R20291 8469433 CDR20291_r01 rRNA CDR20291_r01 NC_013316.1 24945 26723 D 16S ribosomal RNA 24945..26723 Clostridium difficile R20291 8466885 CDR20291_r02 rRNA CDR20291_r02 NC_013316.1 26820 29770 D 23S ribosomal RNA 26820..29770 Clostridium difficile R20291 8469425 CDR20291_r03 rRNA CDR20291_r03 NC_013316.1 29899 30015 D 5S ribosomal RNA 29899..30015 Clostridium difficile R20291 8469434 CDR20291_r04 rRNA CDR20291_r04 NC_013316.1 127805 129435 D 16S ribosomal RNA 127805..129435 Clostridium difficile R20291 8469632 CDR20291_r05 rRNA CDR20291_r05 NC_013316.1 129786 132416 D 23S ribosomal RNA 129786..132416 Clostridium difficile R20291 8469426 CDR20291_r06 rRNA CDR20291_r06 NC_013316.1 133029 134660 D 16S ribosomal RNA 133029..134660 Clostridium difficile R20291 8469435 CDR20291_r07 rRNA CDR20291_r07 NC_013316.1 135270 137865 D 23S ribosomal RNA 135270..137865 Clostridium difficile R20291 8469427 CDR20291_r08 rRNA CDR20291_r08 NC_013316.1 137938 138054 D 5S ribosomal RNA 137938..138054 Clostridium difficile R20291 8469436 CDR20291_r20 rRNA CDR20291_r20 NC_013316.1 144561 147513 D 23S ribosomal RNA 144561..147513 Clostridium difficile R20291 8470021 CDR20291_r21 rRNA CDR20291_r21 NC_013316.1 147586 147702 D 5S ribosomal RNA 147586..147702 Clostridium difficile R20291 8469437 CDR20291_r09 rRNA CDR20291_r09 NC_013316.1 378649 380273 D 16S ribosomal RNA 378649..380273 Clostridium difficile R20291 8467055 CDR20291_r10 rRNA CDR20291_r10 NC_013316.1 380464 383416 D 23S ribosomal RNA 380464..383416 Clostridium difficile R20291 8469428 CDR20291_r11 rRNA CDR20291_r11 NC_013316.1 383489 383605 D 5S ribosomal RNA 383489..383605 Clostridium difficile R20291 8469438 CDR20291_r12 rRNA CDR20291_r12 NC_013316.1 1087908 1089531 D 16S ribosomal RNA 1087908..1089531 Clostridium difficile R20291 8467491 CDR20291_r13 rRNA CDR20291_r13 NC_013316.1 1089825 1092777 D 23S ribosomal RNA 1089825..1092777 Clostridium difficile R20291 8469429 CDR20291_r14 rRNA CDR20291_r14 NC_013316.1 1092897 1093013 D 5S ribosomal RNA 1092897..1093013 Clostridium difficile R20291 8469439 CDR20291_r22 rRNA CDR20291_r22 NC_013316.1 3063277 3066229 R 23S ribosomal RNA complement(3063277..3066229) Clostridium difficile R20291 8468754 CDR20291_r15 rRNA CDR20291_r15 NC_013316.1 3066387 3068009 R 16S ribosomal RNA complement(3066387..3068009) Clostridium difficile R20291 8469440 CDR20291_r25 rRNA CDR20291_r25 NC_013316.1 3869670 3869786 R 5S ribosomal RNA complement(3869670..3869786) Clostridium difficile R20291 8469223 CDR20291_r23 rRNA CDR20291_r23 NC_013316.1 3869859 3872811 R 23S ribosomal RNA complement(3869859..3872811) Clostridium difficile R20291 8469449 CDR20291_r16 rRNA CDR20291_r16 NC_013316.1 3873066 3874690 R 16S ribosomal RNA complement(3873066..3874690) Clostridium difficile R20291 8469441 CDR20291_r26 rRNA CDR20291_r26 NC_013316.1 4025359 4025475 R 5S ribosomal RNA complement(4025359..4025475) Clostridium difficile R20291 8469302 CDR20291_r24 rRNA CDR20291_r24 NC_013316.1 4025548 4028500 R 23S ribosomal RNA complement(4025548..4028500) Clostridium difficile R20291 8469450 CDR20291_r17 rRNA CDR20291_r17 NC_013316.1 4028691 4030315 R 16S ribosomal RNA complement(4028691..4030315) Clostridium difficile R20291 8469442