-- dump date 20120504_143121 -- class Genbank::CDS -- table cds_note -- id note YP_003135750.1 PFAM: protein of unknown function DUF497; KEGG: efe:EFER_3077 hypothetical protein YP_003135751.1 KEGG: noc:Noc_0692 hypothetical protein YP_003135753.1 PFAM: regulatory protein TetR; KEGG: pla:Plav_2851 TetR family transcriptional regulator YP_003135754.1 PFAM: regulatory protein TetR; KEGG: rle:pRL80046 TetR family transcriptional regulatory protein YP_003135755.1 KEGG: mes:Meso_0579 hypothetical protein YP_003135756.1 KEGG: noc:Noc_2696 hypothetical protein YP_003135758.1 KEGG: bhe:BH16660 chromosome partitioning protein ParA YP_003135759.1 PFAM: transposase IS4 family protein; KEGG: hypothetical protein LOC100198068 YP_003135760.1 KEGG: dde:Dde_2849 ISPg7, transposase YP_003135761.1 KEGG: GH13626 gene product from transcript GH13626-RA YP_003135763.1 KEGG: SPC110; Inner plaque spindle pole body (SPB) component, ortholog of human kendrin; involved in connecting nuclear microtubules to SPB; interacts with Tub4p-complex and calmodulin; phosphorylated by Mps1p in cell cycle-depend-TRUNCATED- YP_003135764.1 KEGG: GH13626 gene product from transcript GH13626-RA YP_003135765.1 PFAM: transposase family protein; KEGG: noc:Noc_1615 transposase YP_003135766.1 KEGG: tmz:Tmz1t_0517 hypothetical protein YP_003135767.1 TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; DNA primase catalytic core domain; KEGG: apa:APP7_0806 putative primase YP_003135768.1 KEGG: hch:HCH_01460 transposase YP_003135769.1 PFAM: transposase IS4 family protein; KEGG: lpp:lpp2895 hypothetical protein YP_003135771.1 KEGG: rhi:NGR_b10010 hypothetical protein YP_003135772.1 KEGG: pna:Pnap_4740 putative transposase YP_003135773.1 PFAM: Protein of unknown function DUF1822 YP_003135774.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003135775.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: dol:Dole_2899 ankyrin YP_003135776.1 KEGG: hypothetical protein YP_003135780.1 KEGG: Bifunctional endo-1,4-beta-xylanase xylA precursor YP_003135781.1 KEGG: Bifunctional endo-1,4-beta-xylanase xylA precursor YP_003135784.1 PFAM: histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; KEGG: azo:azo3909 sensor protein YP_003135785.1 KEGG: oan:Oant_2186 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_003135786.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce0260 hypothetical protein YP_003135787.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: sfu:Sfum_1356 CRISPR-associated protein Cas2 YP_003135788.1 KEGG: mno:Mnod_8094 transposase IS4 family protein YP_003135790.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: mca:MCA0652 CRISPR-associated Cas4 family protein YP_003135791.1 TIGRFAM: CRISPR-associated protein Cas6 YP_003135792.1 KEGG: geo:Geob_3416 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase YP_003135795.1 KEGG: hypothetical protein YP_003135798.1 PFAM: Exonuclease VII small subunit; KEGG: spe:Spro_1080 exodeoxyribonuclease VII small subunit YP_003135799.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_003135800.1 KEGG: dal:Dalk_3579 hypothetical protein YP_003135801.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: glo:Glov_3696 integrase domain protein SAM domain protein YP_003135802.1 PFAM: protein of unknown function DUF1555 YP_003135804.1 KEGG: hypothetical protein YP_003135805.1 KEGG: bpd:BURPS668_A2963 hypothetical protein YP_003135806.1 PFAM: FAD dependent oxidoreductase; amine oxidase; KEGG: hypothetical protein YP_003135807.1 PFAM: aldo/keto reductase; KEGG: Os07g0143000; hypothetical protein YP_003135808.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_003135809.1 KEGG: pin:Ping_1306 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Forkhead-associated protein; SMART: GGDEF domain containing protein; Forkhead-associated protein YP_003135810.1 KEGG: bja:blr1218 hypothetical protein YP_003135811.1 PFAM: protein of unknown function DUF427; KEGG: pna:Pnap_1271 hypothetical protein YP_003135812.1 KEGG: ppd:Ppro_2165 hypothetical protein YP_003135813.1 KEGG: lch:Lcho_1314 hypothetical protein YP_003135814.1 KEGG: Os03g0426900; hypothetical protein; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA YP_003135815.1 PFAM: protein of unknown function DUF29 YP_003135816.1 PFAM: glycosyl transferase family 2; KEGG: dal:Dalk_0845 glycosyl transferase family 2 YP_003135817.1 phytyltransferase acting specifically in the tocopherol biosynthetic pathway; member of the UbiA prenyltransferase family which catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_003135818.1 TIGRFAM: hydrogenase maturation protease; KEGG: sfu:Sfum_2717 hypothetical protein YP_003135819.1 KEGG: mca:MCA1149 hypothetical protein YP_003135820.1 PFAM: Carotenoid oxygenase; KEGG: hypothetical protein YP_003135821.1 KEGG: hypothetical protein YP_003135824.1 PFAM: aldo/keto reductase; KEGG: hypothetical protein YP_003135825.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_003135826.1 KEGG: mlo:mll3440 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein YP_003135827.1 PFAM: PfkB domain protein; KEGG: sfu:Sfum_3386 PfkB domain protein YP_003135828.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: hypothetical protein; K07056 YP_003135829.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003135830.1 PFAM: ATPase AAA; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; KEGG: hypothetical protein YP_003135831.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: ilo:IL0500 signal protein YP_003135832.1 SMART: phospholipid/glycerol acyltransferase YP_003135833.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: abn:AB57_0155 acyl-CoA dehydrogenase YP_003135834.1 PFAM: phosphopantetheine-binding; KEGG: avi:Avi_5619 polyketide synthase YP_003135835.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: dde:Dde_0872 AlgI; alginate O-acetyltransferase YP_003135836.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: NADH dehydrogenase type II, chloroplast precursor; K03885 NADH dehydrogenase YP_003135837.1 PFAM: thioredoxin domain protein; KEGG: TRXm; thioredoxin m YP_003135838.1 KEGG: Os02g0537500; hypothetical protein YP_003135839.1 KEGG: Viral A-type inclusion protein repeat containing protein YP_003135840.1 KEGG: hypothetical protein YP_003135841.1 PFAM: protein of unknown function DUF1486; KEGG: hypothetical protein YP_003135842.1 KEGG: mxa:MXAN_5109 hypothetical protein YP_003135843.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bra:BRADO0047 glutamate carboxypeptidase YP_003135844.1 KEGG: avi:Avi_2221 hypothetical protein YP_003135845.1 PFAM: TrkA-C domain protein; citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: gsu:GSU2317 TrkA domain-containing protein YP_003135846.1 PFAM: glycosyl transferase group 1; KEGG: lip:LIC007 hypothetical protein YP_003135847.1 KEGG: sfr:Sfri_2831 hypothetical protein YP_003135848.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: afr:AFE_1342 UDP-glucose 4-epimerase YP_003135849.1 PFAM: glycosyl transferase family 2; KEGG: met:M446_4968 glycosyl transferase family protein YP_003135850.1 PFAM: glycosyl transferase group 1; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein YP_003135851.1 TIGRFAM: methyltransferase FkbM family; KEGG: nmu:Nmul_A0295 methyltransferase FkbM YP_003135852.1 PFAM: glycosyl transferase family 2; KEGG: sfr:Sfri_2839 glycosyl transferase, family 2 YP_003135853.1 KEGG: vvu:VV2_1577 hypothetical protein YP_003135854.1 PFAM: cyclase family protein; KEGG: scl:sce1525 hypothetical protein YP_003135856.1 PFAM: glycosyl transferase group 1; KEGG: fph:Fphi_1475 glycosyl transferase, group 1 YP_003135857.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bbt:BBta_6893 3-oxoacyl-(acyl-carrier-protein) reductase YP_003135858.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sfr:Sfri_2837 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_003135859.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: swp:swp_1562 acylneuraminate cytidylyltransferase YP_003135860.1 TIGRFAM: photosystem II 44 kDa subunit reaction center protein; PFAM: photosystem antenna family protein; KEGG: psbC; PSII 43 kDa protein; K02705 photosystem II PsbC protein YP_003135861.1 TIGRFAM: photosystem II D2 protein (photosystem q(a) protein); PFAM: photosynthetic reaction centre protein; KEGG: photosystem II D2 protein; K02706 photosystem II PsbD protein YP_003135862.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7168 hypothetical protein YP_003135863.1 KEGG: hypothetical protein YP_003135864.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gur:Gura_2760 cobalt ABC transporter ATPase YP_003135865.1 PFAM: protein of unknown function DUF990; KEGG: acp:A2cp1_0429 protein of unknown function DUF990 YP_003135868.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: hypothetical protein YP_003135869.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: hypothetical protein YP_003135870.1 catalyzes the phosphorylation of NAD to NADP YP_003135871.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_003135872.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: mxa:MXAN_0463 Xaa-Pro aminopeptidase YP_003135873.1 PFAM: protein of unknown function DUF124; KEGG: swd:Swoo_0457 hypothetical protein YP_003135874.1 PFAM: protein of unknown function DUF124; KEGG: hch:HCH_01584 hypothetical protein YP_003135875.1 PFAM: protein of unknown function DUF124; KEGG: swd:Swoo_0459 hypothetical protein YP_003135876.1 PFAM: peptidase M48 Ste24p; KEGG: hch:HCH_01586 TPR repeat-containing Zn-dependent protease YP_003135877.1 KEGG: afw:Anae109_2712 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase 7TM extracellular region; metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003135878.1 KEGG: hypothetical protein YP_003135879.1 PFAM: SH3 type 3 domain protein YP_003135880.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7445 hypothetical protein YP_003135881.1 PFAM: glycosyl transferase family 4; KEGG: sfu:Sfum_3327 glycosyl transferase, family 4 YP_003135882.1 SMART: HTTM domain protein; KEGG: hypothetical protein YP_003135883.1 KEGG: hch:HCH_04699 hypothetical protein YP_003135885.1 KEGG: gbm:Gbem_2571 conserved hypothetical cytosolic protein YP_003135886.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gbm:Gbem_2570 DegT/DnrJ/EryC1/StrS aminotransferase YP_003135887.1 KEGG: similar to conserved hypothetical protein YP_003135888.1 KEGG: lpn:lpg1236 modification methylase (Eco47II, Sau96I); TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; regulatory protein MerR; SMART: regulatory protein MerR YP_003135889.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: sfu:Sfum_2168 carbohydrate kinase, YjeF related protein YP_003135890.1 PFAM: protein of unknown function DUF55; KEGG: hypothetical protein YP_003135891.1 PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: vpa:VP0363 glycerol dehydrogenase YP_003135892.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce0260 hypothetical protein YP_003135893.1 PFAM: UspA domain protein; KEGG: aci:ACIAD2005 universal stress protein YP_003135894.1 KEGG: Os08g0499800; hypothetical protein YP_003135895.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_003135896.1 PFAM: protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: pol:Bpro_4678 protein serine/threonine phosphatases YP_003135897.1 PFAM: dTDP-4-dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; NAD-dependent epimerase/dehydratase; KEGG: sfu:Sfum_1538 dTDP-4-dehydrorhamnose reductase YP_003135898.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: sfu:Sfum_2716 nickel-dependent hydrogenase, large subunit YP_003135899.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: glo:Glov_2792 NADH ubiquinone oxidoreductase 20 kDa subunit YP_003135900.1 with HoxF and HoxE catalyzes H2-dependent NAD(P)+-reduction as well as NAD(P)H-dependent H2-evolution YP_003135901.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: sfu:Sfum_2713 NADH dehydrogenase (quinone) YP_003135902.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: sfu:Sfum_2712 NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_003135903.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003135904.1 PFAM: Haem oxygenase-like; KEGG: HMOX2; heme oxygenase (decycling) 2; K00510 heme oxygenase YP_003135905.1 KEGG: pmr:PMI2885 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; radical SAM protein; SMART: Elongator protein 3/MiaB/NifB YP_003135906.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: mpt:Mpe_A0683 hypothetical protein YP_003135907.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mmw:Mmwyl1_0217 NADH:flavin oxidoreductase/NADH oxidase YP_003135908.1 PFAM: cupin; KEGG: hypothetical protein YP_003135909.1 PFAM: helix-turn-helix HxlR type; KEGG: bja:blr5836 transcriptional regulatory protein PadR- YP_003135910.1 PFAM: conserved hypothetical protein; KEGG: hpy:HP1484 hypothetical protein YP_003135912.1 PFAM: nitroreductase; KEGG: mfa:Mfla_1136 nitroreductase YP_003135914.1 PFAM: heat shock protein DnaJ ; pentapeptide repeat protein; SMART: heat shock protein DnaJ KEGG: mms:mma_2224 pentapeptide repeat-containing protein YP_003135915.1 PFAM: NHL repeat containing protein; KEGG: afr:AFE_0711 NHL repeat protein YP_003135916.1 PFAM: phytanoyl-CoA dioxygenase; KEGG: pin:Ping_2402 hypothetical protein YP_003135920.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; KEGG: bba:Bd1251 1-pyrroline-5 carboxylate dehydrogenase YP_003135924.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_003135925.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7168 hypothetical protein YP_003135926.1 PFAM: peptidase M48 Ste24p; KEGG: acp:A2cp1_1046 peptidase M48 Ste24p YP_003135927.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: similar to 6-pyruvoyl tetrahydrobiopterin synthase YP_003135928.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce4074 protein kinase YP_003135929.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: neu:NE1957 Orn/DAP/Arg decarboxylase family protein YP_003135930.1 PFAM: protein of unknown function DUF147; KEGG: dde:Dde_1515 hypothetical protein YP_003135931.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_003135932.1 KEGG: cation channel family protein YP_003135934.1 PFAM: photosystem I reaction centre subunit IV/PsaE; KEGG: PSAE; PSAE, photosystem I reaction center subunit; K02693 photosystem I subunit IV YP_003135935.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_003135936.1 KEGG: mlo:mll4444 hypothetical protein YP_003135937.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: mca:MCA2770 xaa-pro aminopeptidase YP_003135938.1 PFAM: protein of unknown function UPF0227; KEGG: ade:Adeh_0729 hypothetical protein YP_003135941.1 PFAM: permease YjgP/YjgQ family protein; KEGG: sat:SYN_00415 permease YP_003135943.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dac:Daci_2044 short-chain dehydrogenase/reductase SDR YP_003135944.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: rpb:RPB_1419 hypotheticalprotein YP_003135945.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_003135946.1 PFAM: BioY protein; KEGG: rpc:RPC_1068 BioY protein YP_003135947.1 KEGG: gsu:GSU1584 biotin synthetase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003135950.1 PFAM: protein of unknown function DUF29; KEGG: mno:Mnod_0010 protein of unknown function DUF29 YP_003135951.1 PFAM: XisI protein YP_003135952.1 PFAM: XisH protein YP_003135953.1 PFAM: protein of unknown function DUF1555; KEGG: bmj:BMULJ_04389 outer membrane autotransporter barrel YP_003135955.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: dno:DNO_0387 IS605 family transposase YP_003135956.1 TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: PpSig2; plastid sigma facor SIG2 YP_003135957.1 PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: CGL83; hypothetical protein YP_003135958.1 PFAM: polyprenyl synthetase; KEGG: predicted protein YP_003135959.1 KEGG: hypothetical protein YP_003135960.1 PFAM: ABC transporter; KEGG: hypothetical protein YP_003135961.1 KEGG: aav:Aave_4681 protein serine/threonine phosphatase; PFAM: protein phosphatase 2C-like; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein YP_003135962.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003135964.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rpi:Rpic_2838 GCN5-related N-acetyltransferase YP_003135965.1 TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: PpSig2; plastid sigma facor SIG2 YP_003135966.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_003135967.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pla:Plav_2063 GCN5-related N-acetyltransferase YP_003135970.1 PFAM: protein of unknown function DUF433; KEGG: mch:Mchl_4550 protein of unknown function DUF433 YP_003135972.1 KEGG: rpe:RPE_2423 hypothetical protein YP_003135973.1 KEGG: rpt:Rpal_4399 hypothetical protein YP_003135974.1 PFAM: YcfA family protein; KEGG: rpb:RPB_4579 YcfA-like YP_003135975.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_2743 hypothetical protein YP_003135976.1 PFAM: EAL domain protein; GAF domain protein; SMART: EAL domain protein; GAF domain protein; KEGG: psa:PST_3107 EAL domain protein YP_003135977.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; KEGG: hypothetical protein; K10960 geranylgeranyl reductase YP_003135978.1 KEGG: ppr:PBPRA1243 hypothetical protein YP_003135979.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sde:Sde_2319 hypothetical protein YP_003135983.1 MobA; links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide; involved in molybdenum cofactor biosynthesis YP_003135984.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: hypothetical protein YP_003135986.1 PFAM: globin; KEGG: mca:MCA2507 hypothetical protein YP_003135987.1 PFAM: peptidase M48 Ste24p; KEGG: gbm:Gbem_3390 peptidase M48 Ste24p YP_003135989.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_003135990.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_003135991.1 KEGG: afr:AFE_1965 hypothetical protein YP_003135993.1 PFAM: ABC transporter; KEGG: gsu:GSU1504 ABC transporter permease YP_003135994.1 Essential for recycling GMP and indirectly, cGMP YP_003135995.1 PFAM: protein of unknown function DUF370; KEGG: dde:Dde_2720 hypothetical protein YP_003135996.1 PFAM: glycosyl transferase group 1; KEGG: pat:Patl_1191 glycosyl transferase, group 1 YP_003135997.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bcm:Bcenmc03_6872 Rieske (2Fe-2S) domain-containing protein YP_003135998.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_003135999.1 KEGG: Os02g0267000; hypothetical protein; K03100 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_003136001.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_003136003.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: gsu:GSU2043 type 4 prepilin-like proteins leader peptide processing enzyme YP_003136004.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_003136005.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: apj:APJL_0871 filamentation induced by cAMP protein Fic-like protein YP_003136006.1 PFAM: aldo/keto reductase; KEGG: hypothetical protein YP_003136007.1 TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: pca:Pcar_0738 folylpolyglutamate synthetase; dihydrofolate synthetase YP_003136008.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_003136009.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mfa:Mfla_1884 glyoxalase/bleomycin resistance protein/dioxygenase YP_003136010.1 PFAM: protein of unknown function UPF0150; KEGG: mpo:Mpop_1487 protein of unknown function UPF0150 YP_003136012.1 PFAM: transposase IS4 family protein; KEGG: hypothetical protein YP_003136013.1 SMART: hypothetical protein; KEGG: noc:Noc_0381 hypotheticalprotein YP_003136014.1 KEGG: vfi:VF_2243 general secretion pathway protein A YP_003136015.1 KEGG: hap:HAPS_0434 hypothetical protein YP_003136016.1 KEGG: hap:HAPS_0433 predicted transcription regulator containing HTH domain YP_003136017.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003136018.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_003136019.1 PFAM: protein of unknown function DUF450 YP_003136020.1 PFAM: protein of unknown function DUF486; KEGG: dar:Daro_3184 hypothetical protein YP_003136021.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: sat:SYN_00304 multimodular transpeptidase-transglycosylase YP_003136022.1 PFAM: protein of unknown function UPF0187; KEGG: mxa:MXAN_3733 hypothetical protein YP_003136023.1 KEGG: hypothetical protein YP_003136024.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: 50S ribosomal protein L31 YP_003136025.1 forms a direct contact with the tRNA during translation YP_003136026.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_003136027.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_003136028.1 is a component of the macrolide binding site in the peptidyl transferase center YP_003136029.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_003136030.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_003136031.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_003136032.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_003136033.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_003136034.1 TIGRFAM: adenylate kinase; PFAM: adenylate kinase; KEGG: xcb:XC_0873 adenylate kinase YP_003136035.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_003136036.1 late assembly protein YP_003136037.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_003136038.1 binds 5S rRNA along with protein L5 and L25 YP_003136039.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_003136040.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_003136041.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_003136042.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_003136043.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_003136044.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_003136045.1 one of the stabilizing components for the large ribosomal subunit YP_003136046.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_003136047.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_003136048.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_003136049.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_003136050.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_003136051.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_003136052.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_003136053.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_003136054.1 KEGG: pna:Pnap_4740 transposase YP_003136055.1 converts protoheme IX and farnesyl diphosphate to heme O YP_003136056.1 PFAM: cytochrome oxidase assembly; KEGG: rme:Rmet_0269 cytochrome oxidase assembly YP_003136057.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_003136058.1 KEGG: sfu:Sfum_1234 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; KH type 2 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_003136060.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: mes:Meso_0914 endonuclease/exonuclease/phosphatase YP_003136061.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_003136062.1 PFAM: permease; KEGG: dal:Dalk_1552 permease YP_003136063.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: ypi:YpsIP31758_1306 von Willebrand factor type A domain-containing protein YP_003136064.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: gsu:GSU1462 RNA methyltransferase YP_003136065.1 PFAM: phosphoglycerate mutase; KEGG: hypothetical protein, conserved YP_003136066.1 PFAM: protein of unknown function DUF820 YP_003136067.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_003136068.1 PFAM: NUDIX hydrolase; KEGG: aeh:Mlg_0745 NUDIX hydrolase YP_003136069.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_003136070.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_003136073.1 KEGG: hypothetical protein YP_003136074.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: sat:SYN_01762 GTPase YP_003136075.1 PFAM: histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; KEGG: azo:azo3909 sensor protein YP_003136076.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_003136077.1 KEGG: precursor of protein cell division protease ftsh-like protein; K03798 cell division protease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003136078.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bra:BRADO3708 LysR family transcriptional regulator YP_003136080.1 PFAM: surface antigen (D15); polypeptide-transport-associated domain protein ShlB-type; surface antigen variable number repeat protein; KEGG: hch:HCH_03379 hemolysin activation/secretion protein YP_003136081.1 KEGG: sbl:Sbal_1979 hypothetical protein YP_003136083.1 KEGG: mxa:MXAN_5175 hypothetical protein YP_003136084.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: hch:HCH_03375 heme utilization/adhesion protein YP_003136085.1 KEGG: hypothetical protein YP_003136087.1 PFAM: aldo/keto reductase; KEGG: scl:sce6461 oxidoreductase YP_003136088.1 PFAM: pentapeptide repeat protein; KEGG: sat:SYN_00349 pentapeptide repeat-containing protein YP_003136089.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: mxa:MXAN_7274 SNF2/helicase domain-containing protein YP_003136090.1 KEGG: hypothetical protein YP_003136091.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: pca:Pcar_1278 CMP-N-acetylneuraminic acid synthetase YP_003136092.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH00754 polysaccharide ABC transporter ATP-binding protein YP_003136093.1 KEGG: noc:Noc_0746 integrins alpha chain YP_003136094.1 PFAM: sulfotransferase; KEGG: aeh:Mlg_2328 sulfotransferase YP_003136095.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: dol:Dole_1806 methyltransferase type 11 YP_003136096.1 KEGG: pfo:Pfl01_4047 hypothetical protein YP_003136098.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures YP_003136099.1 PFAM: glycosyl transferase group 1; KEGG: dat:HRM2_19850 glycosyl transferase (group I) YP_003136100.1 KEGG: afw:Anae109_1816 hypothetical protein YP_003136101.1 KEGG: mca:MCA0453 ParA family protein YP_003136103.1 PFAM: cyclic nucleotide-binding; KEGG: lch:Lcho_2129 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003136104.1 SMART: hypothetical protein; KEGG: hypothetical protein LOC100220864 YP_003136105.1 KEGG: hypothetical protein; K10866 DNA repair protein RAD50 YP_003136106.1 PFAM: SMC domain protein; KEGG: aav:Aave_1846 ATPase-like protein YP_003136107.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: PDS1; phytoene desaturase; K02293 phytoene dehydrogenase, phytoene desaturase YP_003136108.1 PFAM: Squalene/phytoene synthase; KEGG: hypothetical protein; K02291 phytoene synthase YP_003136111.1 KEGG: mxa:MXAN_2297 hypothetical protein YP_003136112.1 KEGG: mxa:MXAN_2297 hypothetical protein YP_003136119.1 PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10; KEGG: Os07g0456700; hypothetical protein YP_003136120.1 KEGG: noc:Noc_2911 hypothetical protein YP_003136121.1 PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: hypothetical protein YP_003136122.1 PFAM: lipolytic protein G-D-S-L family; KEGG: rfr:Rfer_2331 lipolytic enzyme, G-D-S-L YP_003136123.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_003136124.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: noc:Noc_2926 UbiE/COQ5 methyltransferase YP_003136125.1 TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: ftn:FTN_0082 HAD superfamily hydrolase YP_003136126.1 KEGG: LCIC; low-CO2 inducible protein YP_003136128.1 PFAM: inner-membrane translocator; KEGG: mno:Mnod_3962 inner-membrane translocator YP_003136129.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: msl:Msil_3760 hydrogenase maturation protease YP_003136130.1 PFAM: aldehyde dehydrogenase; KEGG: amc:MADE_00587 NAD-dependent aldehyde dehydrogenase YP_003136131.1 PFAM: methyltransferase type 11; Cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 12; KEGG: VTE4; gamma-tocopherol methyltransferase YP_003136132.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003136133.1 PFAM: protein of unknown function DUF790; KEGG: scl:sce6812 hypothetical protein YP_003136134.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_003136135.1 PFAM: AMP-dependent synthetase and ligase; KEGG: hypothetical protein YP_003136136.1 KEGG: hypothetical protein YP_003136138.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_003136140.1 PFAM: AIG2 family protein; KEGG: sfu:Sfum_3843 hypothetical protein YP_003136141.1 PFAM: protein of unknown function DUF1555 YP_003136143.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_003136144.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: dde:Dde_1175 RNA-binding region RNP-1 YP_003136148.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: pha:PSHAa2042 pterin-4-alpha-carbinolamine dehydratase YP_003136149.1 PFAM: regulatory protein Crp; SMART: regulatory protein Crp; KEGG: avn:Avin_22000 CopG/Arc/MetJ family transcriptional regulator YP_003136150.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: rpe:RPE_3892 aspartate/glutamate/uridylate kinase YP_003136151.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: bra:BRADO3337 molybdenum storage protein subunit beta (Mo storage protein subunit beta) (MoSto subunit beta) YP_003136152.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: hypothetical protein YP_003136153.1 KEGG: xcv:XCV0112 hypothetical protein YP_003136154.1 PFAM: protein of unknown function DUF1400 YP_003136155.1 PFAM: Carotenoid oxygenase; KEGG: pla:Plav_2656 carotenoid oxygenase YP_003136156.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_003136157.1 KEGG: mca:MCA1149 hypothetical protein YP_003136158.1 PFAM: surface antigen (D15); polypeptide-transport-associated domain protein ShlB-type; surface antigen variable number repeat protein; KEGG: OEP80; chloroplast outer envelope protein; K07277 outer membrane protein YP_003136159.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_003136161.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1184 dipeptide ABC transporter permease protein YP_003136162.1 PFAM: extracellular solute-binding protein family 5; KEGG: pca:Pcar_1870 dipeptide transport protein YP_003136163.1 PFAM: restriction endonuclease; KEGG: pna:Pnap_4472 cobyrinic acid a,c-diamide synthase YP_003136164.1 PFAM: TrkA-N domain protein; ion transport 2 domain protein; TrkA-C domain protein; KEGG: gbm:Gbem_3794 TrkA-N domain protein YP_003136165.1 PFAM: FAD linked oxidase; KEGG: lpc:LPC_1063 oxidase YP_003136166.1 catalyzes the conversion of N-acetyl_L-aspartic acid (NAA) to aspartate and acetate YP_003136167.1 PFAM: protein of unknown function DUF177; KEGG: ppd:Ppro_1739 hypothetical protein YP_003136168.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_003136169.1 KEGG: dal:Dalk_2296 filamentous hemagglutinin family outer membrane protein YP_003136170.1 KEGG: hch:HCH_01460 transposase YP_003136172.1 PFAM: [2Fe-2S]-binding domain protein; KEGG: rso:RSc1469 dehydrogenase oxidoreductase protein YP_003136173.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: bph:Bphy_0094 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding YP_003136174.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: bbt:BBta_2635 carbon monoxide dehydrogenase medium subunit YP_003136176.1 PFAM: protein of unknown function DUF182; KEGG: msl:Msil_0236 protein of unknown function DUF182 YP_003136178.1 KEGG: hypothetical protein; K02523 octaprenyl-diphosphate synthase; TIGRFAM: solanesyl diphosphate synthase; PFAM: polyprenyl synthetase YP_003136179.1 PFAM: ABC transporter; KEGG: ABC1 family protein; K08869 aarF domain-containing kinase YP_003136180.1 PFAM: MOSC domain containing protein; KEGG: hap:HAPS_0672 predicted 2Fe-2S cluster-containing protein YP_003136181.1 KEGG: glo:Glov_2547 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein YP_003136182.1 PFAM: photosystem I protein PsaD; KEGG: hypothetical protein; K02692 photosystem I subunit II YP_003136183.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003136184.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003136185.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_003136186.1 KEGG: Pelp1; proline, glutamic acid and leucine rich protein 1 YP_003136187.1 PFAM: pentapeptide repeat protein; KEGG: mmw:Mmwyl1_0563 pentapeptide repeat-containing protein YP_003136188.1 KEGG: serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003136189.1 PFAM: glycosyl transferase family 2; KEGG: geo:Geob_0317 glycosyl transferase family 2 YP_003136190.1 TIGRFAM: methyltransferase FkbM family; KEGG: mex:Mext_3682 FkbM family methyltransferase YP_003136191.1 KEGG: bid:Bind_3305 outer membrane insertion C-terminal signal YP_003136192.1 PFAM: methyltransferase type 12; KEGG: met:M446_0944 methyltransferase type 12 YP_003136193.1 KEGG: tau:Tola_1240 hypothetical protein YP_003136194.1 KEGG: swp:swp_0600 hypothetical protein swp_0600 YP_003136195.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_003136196.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein YP_003136197.1 TIGRFAM: chorismate mutase; PFAM: chorismate mutase of the AroH class; KEGG: ank:AnaeK_0193 chorismate mutase YP_003136198.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: dat:HRM2_24780 SppA YP_003136199.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_003136200.1 TIGRFAM: AbrB family transcriptional regulator YP_003136201.1 PFAM: hypothetical protein; KEGG: CAAX amino terminal protease family protein; K07052 YP_003136202.1 PFAM: protein of unknown function DUF445; KEGG: pca:Pcar_0273 hypothetical protein YP_003136203.1 KEGG: ppd:Ppro_0406 hypothetical protein YP_003136206.1 KEGG: swp:swp_4052 hypothetical protein YP_003136207.1 KEGG: ade:Adeh_3807 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C YP_003136208.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_003136209.1 PFAM: protein of unknown function DUF450 YP_003136210.1 KEGG: Os07g0418000; hypothetical protein YP_003136211.1 PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: bpd:BURPS668_A2683 chemotaxis histidine kinase/response regulator YP_003136212.1 PFAM: protein of unknown function DUF1555 YP_003136214.1 KEGG: ppd:Ppro_0040 hypothetical protein YP_003136215.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: hypothetical protein YP_003136216.1 KEGG: Tmtc3; transmembrane and tetratricopeptide repeat containing 3 YP_003136217.1 PFAM: peptidase M48 Ste24p; KEGG: hypothetical protein YP_003136218.1 KEGG: Os04g0635700; hypothetical protein YP_003136219.1 TIGRFAM: iron-sulfur cluster biosynthesis transcriptional regulator SufR; PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: ppr:PBPRA0239 hypothetical protein YP_003136220.1 with SufCD activates cysteine desulfurase SufS YP_003136221.1 KEGG: nmu:Nmul_A0697 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA YP_003136222.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: nmu:Nmul_A0698 FeS assembly protein SufD YP_003136223.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: hypothetical protein; K11717 cysteine desulfurase / selenocysteine lyase YP_003136224.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: hypothetical protein YP_003136225.1 PFAM: dienelactone hydrolase; KEGG: bbt:BBta_7870 carboxymethylenebutenolidase YP_003136227.1 cytochrome b6-f complex subunit 5; plastohydroquinone/plastocyanin oxidoreductase; with PetL, PetM and PetN makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_003136229.1 PFAM: manganese and iron superoxide dismutase; KEGG: sfu:Sfum_1767 superoxide dismutase YP_003136230.1 PFAM: FAD dependent oxidoreductase; KEGG: spl:Spea_1708 hypothetical protein YP_003136231.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: afr:AFE_0717 hydrogenase nickel insertion protein HypA YP_003136232.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: msl:Msil_3748 hydrogenase accessory protein HypB YP_003136233.1 KEGG: pca:Pcar_2709 two component signal transduction response regulator; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; response regulator receiver; PAS domain containing protein YP_003136234.1 KEGG: ppd:Ppro_3009 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003136235.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_003136236.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_003136237.1 PFAM: carbohydrate-selective porin OprB; S-layer domain protein; KEGG: similar to CG15920-PA YP_003136238.1 TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: mca:MCA1022 cysteine synthase A YP_003136239.1 PFAM: heat shock protein DnaJ SMART: heat shock protein DnaJ KEGG: Os06g0716100; hypothetical protein YP_003136240.1 PFAM: protein of unknown function DUF156; KEGG: cju:C8J_0474 hypothetical protein YP_003136241.1 PFAM: phosphoribosyltransferase; KEGG: bxe:Bxe_A1607 nucleotide phosphoribosyltransferase YP_003136242.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003136243.1 KEGG: pfs:PFLU0134 hypothetical protein YP_003136244.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_003136246.1 PFAM: protein of unknown function DUF218; KEGG: rfr:Rfer_1557 hypothetical protein YP_003136249.1 TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; KEGG: mrd:Mrad2831_0512 dihydroneopterin aldolase YP_003136250.1 PFAM: rhomboid family protein; KEGG: dat:HRM2_28470 hypothetical protein YP_003136251.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: azo:azo3774 serine/threonine protein kinase YP_003136253.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_003136254.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; KEGG: gme:Gmet_1879 alpha-isopropylmalate/homocitrate synthase family transferase YP_003136255.1 PFAM: ferredoxin; KEGG: hypothetical protein YP_003136256.1 KEGG: mca:MCA1149 hypothetical protein YP_003136257.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_003136258.1 KEGG: Os08g0382400; hypothetical protein YP_003136259.1 KEGG: CHLI1; magnesium chelatase subunit I; K03405 magnesium chelatase subunit ChlI; TIGRFAM: magnesium chelatase ATPase I; PFAM: magnesium chelatase ChlI subunit; SMART: ATPase AAA YP_003136261.1 TIGRFAM: photosystem I reaction center subunit PsaK; PFAM: photosystem I psaG/psaK protein; KEGG: photosystem I reaction center subunit X; K02698 photosystem I subunit X YP_003136262.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_003136263.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_003136264.1 PFAM: protein of unknown function DUF1568; KEGG: hap:HAPS_0834 hypothetical protein YP_003136267.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003136269.1 KEGG: vcm:VCM66_0874 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003136270.1 KEGG: pin:Ping_3621 uridine kinase YP_003136271.1 PFAM: protein of unknown function DUF107; KEGG: prw:PsycPRwf_2365 hypothetical protein YP_003136272.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: hypothetical protein YP_003136273.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce2003 hypothetical protein YP_003136274.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: lysR-like transcriptional regulator YP_003136275.1 PFAM: NnrUfamily protein; KEGG: hypothetical protein YP_003136276.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_003136277.1 KEGG: met:M446_7005 hypothetical protein YP_003136278.1 KEGG: sme:SM_b22012 hypothetical protein YP_003136279.1 TIGRFAM: glutaredoxin-family domain protein; PFAM: Redoxin domain protein; glutaredoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: tcx:Tcr_0139 glutaredoxin-like region YP_003136280.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_2892 two component transcriptional regulator, winged helix family YP_003136281.1 KEGG: glo:Glov_0589 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003136282.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: lpc:LPC_2508 phosphopantetheine-protein transferase YP_003136283.1 KEGG: mfa:Mfla_2011 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase YP_003136284.1 TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: nucleotidyl transferase; KEGG: sse:Ssed_3013 glucose-1-phosphate thymidylyltransferase YP_003136285.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: rme:Rmet_2735 dTDP-glucose 4,6-dehydratase YP_003136286.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_4149 periplasmic sensor signal transduction histidine kinase YP_003136287.1 PFAM: Rho termination factor domain protein; KEGG: afw:Anae109_1114 hypothetical protein YP_003136288.1 KEGG: similar to coiled-coil and C2 domain containing 2A YP_003136289.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dps:DP2354 cytosine deaminase YP_003136290.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mxa:MXAN_6222 short chain dehydrogenase/reductase family oxidoreductase YP_003136292.1 PFAM: GrpE protein; KEGG: hypothetical protein; K03687 molecular chaperone GrpE YP_003136293.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_003136294.1 TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: asa:ASA_0286 translation initiation inhibitor YP_003136295.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis YP_003136296.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: sat:SYN_00180 HflC protein YP_003136297.1 KEGG: hypothetical protein YP_003136300.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: mxa:MXAN_7240 HAE1 family efflux transporter YP_003136301.1 PFAM: ion transport 2 domain protein; KEGG: ppd:Ppro_0413 ion transport 2 domain-containing protein YP_003136302.1 PFAM: Squalene/phytoene synthase; KEGG: Squalene and phytoene synthases family protein ; K00801 farnesyl-diphosphate farnesyltransferase YP_003136303.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: cja:CJA_2451 CRISPR-associated protein Cas2 YP_003136304.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: tgr:Tgr7_2433 CRISPR-associated Cas1/Cas4 family protein YP_003136305.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: net:Neut_1014 CRISPR-associated Cas4 family protein YP_003136307.1 TIGRFAM: CRISPR-associated protein Csc1 YP_003136308.1 TIGRFAM: CRISPR-associated protein Csc2 YP_003136309.1 TIGRFAM: CRISPR-associated protein Csc3 YP_003136310.1 KEGG: tgr:Tgr7_2442 hypothetical protein; TIGRFAM: CRISPR-associated helicase, Cyano-type; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase YP_003136313.1 PFAM: hypothetical protein; KEGG: hypothetical protein YP_003136314.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ABC(ATP-binding) family transporter: toluene tolerance; K02065 ABC transport system ATP-binding protein YP_003136315.1 PFAM: outer membrane efflux protein; KEGG: dde:Dde_0961 outer membrane protein YP_003136316.1 KEGG: ftn:FTN_1159 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_003136317.1 PFAM: amine oxidase; Rieske [2Fe-2S] domain protein; KEGG: PDS3; PDS3 (PHYTOENE DESATURASE); K02293 phytoene dehydrogenase, phytoene desaturase YP_003136318.1 KEGG: scl:sce1966 hypothetical protein YP_003136319.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ecm:EcSMS35_3566 amino acid ABC transporter ATP-binding protein YP_003136320.1 PFAM: FAD dependent oxidoreductase; KEGG: mxa:MXAN_4231 glycine oxidase ThiO YP_003136321.1 KEGG: hypothetical protein YP_003136322.1 TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase; KEGG: dol:Dole_2374 malate dehydrogenase, NAD-dependent YP_003136323.1 SMART: leucine-rich repeat-containing protein typical subtype; KEGG: similar to leucine-rich repeats and immunoglobulin-like domains 1 YP_003136324.1 KEGG: gur:Gura_1761 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003136325.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_003136326.1 PFAM: ATP-grasp domain protein; KEGG: hin:HI1196 succinyl-CoA synthetase subunit beta YP_003136327.1 PFAM: secretion protein HlyD family protein; biotin/lipoyl attachment domain-containing protein; KEGG: plu:plu0635 hypothetical protein YP_003136328.1 KEGG: hch:HCH_06117 bacteriocin/lantibiotic ABC transporter; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; cyclic nucleotide-binding; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: ATPase AAA; cyclic nucleotide-binding YP_003136329.1 KEGG: eba:ebA1670 rotamase (prolyl cis-trans isomerase) YP_003136331.1 KEGG: lip:LI1111 amidophosphoribosyltransferases YP_003136333.1 may be involved in binding plastoquinone and maintaining PSII dimers YP_003136335.1 PFAM: ResB family protein; KEGG: hypothetical protein; K07399 cytochrome c biogenesis protein YP_003136336.1 KEGG: hypothetical protein YP_003136337.1 TIGRFAM: ferredoxin [2Fe-2S]; PFAM: ferredoxin; KEGG: ferredoxin family protein; K02639 ferredoxin YP_003136338.1 PFAM: inositol monophosphatase; KEGG: azo:azo2021 inositol-1-monophosphatase YP_003136339.1 PFAM: heat shock protein DnaJ ; TPR repeat-containing protein; SMART: heat shock protein DnaJ ; hypothetical protein; KEGG: GF13077 gene product from transcript GF13077-RA YP_003136340.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: cja:CJA_1404 oxidoreductase alpha (molybdopterin) subunit YP_003136341.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: Os08g0382400; hypothetical protein YP_003136342.1 required for the assembly of photosystem I complex YP_003136343.1 PFAM: protein of unknown function DUF482; KEGG: mxa:MXAN_6024 hypothetical protein YP_003136344.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: apa:APP7_0406 riboflavin biosynthesis protein YP_003136345.1 PFAM: pentapeptide repeat protein; KEGG: sat:SYN_00349 pentapeptide repeat-containing protein YP_003136346.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_003136347.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_003136348.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: BCC1; acetyl-coa biotin carboxyl carrier; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein YP_003136349.1 PFAM: peptidase M48 Ste24p; KEGG: azc:AZC_4701 protease heat shock protein precursor YP_003136350.1 PFAM: FAD dependent oxidoreductase; KEGG: Os08g0422000; hypothetical protein YP_003136351.1 KEGG: geo:Geob_3477 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003136352.1 KEGG: bid:Bind_3233 hypothetical protein YP_003136353.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: ATPase AAA; PBS lyase HEAT domain protein repeat-containing protein; KEGG: hypothetical protein YP_003136354.1 KEGG: hypothetical protein YP_003136355.1 KEGG: hypothetical protein YP_003136356.1 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms YP_003136357.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: hypothetical protein YP_003136358.1 KEGG: scl:sce4811 hypothetical protein YP_003136359.1 KEGG: hypothetical protein YP_003136360.1 PFAM: thioredoxin domain protein; KEGG: tgr:Tgr7_2125 thioredoxin YP_003136361.1 negatively supercoils closed circular double-stranded DNA YP_003136362.1 PFAM: type III restriction protein res subunit; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: scl:sce6811 DNA repair protein YP_003136363.1 PFAM: Domain of unknown function DUF1816; CpcD phycobilisome linker domain protein YP_003136364.1 PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: tmz:Tmz1t_0633 hypothetical protein YP_003136365.1 KEGG: dol:Dole_1625 hypothetical protein YP_003136366.1 TIGRFAM: cytochrome c oxidase subunit II; PFAM: cytochrome C oxidase subunit II transmembrane region; cytochrome c oxidase subunit II; KEGG: ank:AnaeK_1600 cytochrome c oxidase subunit II YP_003136367.1 KEGG: lhk:LHK_00170 CoxA; TIGRFAM: cytochrome c oxidase subunit I; PFAM: cytochrome c oxidase subunit I YP_003136368.1 PFAM: cytochrome c oxidase subunit III; KEGG: net:Neut_2392 cytochrome c oxidase subunit III YP_003136371.1 KEGG: hypothetical protein; K03106 signal recognition particle subunit SRP54; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_003136372.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: hypothetical protein YP_003136373.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_003136374.1 PFAM: pentapeptide repeat protein; KEGG: CPLD44; thylakoid lumenal protein YP_003136377.1 KEGG: gbm:Gbem_3055 peptidase S8 and S53 subtilisin kexin sedolisin YP_003136378.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nwi:Nwi_0128 GCN5-related N-acetyltransferase YP_003136379.1 PFAM: inositol monophosphatase; KEGG: tgr:Tgr7_0647 inositol-phosphate phosphatase YP_003136381.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: TPR Domain containing protein YP_003136383.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: pat:Patl_4176 peptidase U61, LD-carboxypeptidase A YP_003136384.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003136385.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_003136386.1 KEGG: ppd:Ppro_1062 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003136387.1 PFAM: arsenate reductase; KEGG: fph:Fphi_1746 arsenate reductase YP_003136388.1 TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: pzu:PHZ_c1440 arsenical resistance protein ArsH YP_003136390.1 PFAM: sodium/hydrogen exchanger; KEGG: ank:AnaeK_3726 sodium/hydrogen exchanger YP_003136391.1 PFAM: protein of unknown function DUF820; KEGG: mxa:MXAN_0519 hypothetical protein YP_003136393.1 catalyzes the formation of tyrosine from arogenate YP_003136395.1 PFAM: fatty acid hydroxylase; short-chain dehydrogenase/reductase SDR; KEGG: hypothetical protein YP_003136396.1 PFAM: glycosyl transferase family 2; KEGG: pna:Pnap_0285 glycosyl transferase family protein YP_003136397.1 PFAM: Domain of unknown function DUF1825; KEGG: hypothetical protein, conserved YP_003136398.1 KEGG: hch:HCH_06797 Tfp pilus assembly protein, major pilin PilA YP_003136399.1 KEGG: EEPD1; endonuclease/exonuclease/phosphatase family domain containing 1 YP_003136400.1 PFAM: cyclase/dehydrase; KEGG: scl:sce1328 hypothetical protein YP_003136401.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: tgr:Tgr7_0449 S6 modification enzyme RimK YP_003136402.1 KEGG: hypothetical protein; K03797 carboxyl-terminal processing protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003136403.1 KEGG: noc:Noc_0084 hypothetical protein YP_003136404.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; protein of unknown function DUF205; KEGG: dal:Dalk_5266 pyruvate, water dikinase YP_003136406.1 PFAM: Recombinase; KEGG: dde:Dde_0896 site-specific recombinase YP_003136407.1 KEGG: viral A-type inclusion protein YP_003136408.1 KEGG: nam:NAMH_0827 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003136409.1 KEGG: mno:Mnod_6776 hypothetical protein YP_003136410.1 KEGG: hypothetical protein; K03798 cell division protease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003136412.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003136414.1 PFAM: glycosyl transferase family 9; KEGG: gbm:Gbem_1989 glycosyl transferase family 9 YP_003136415.1 KEGG: maq:Maqu_0563 hypothetical protein YP_003136416.1 PFAM: SMC domain protein; KEGG: gur:Gura_2794 SMC domain-containing protein YP_003136417.1 PFAM: protein of unknown function DUF423; KEGG: ilo:IL0863 hypothetical protein YP_003136419.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: Os05g0387200; hypothetical protein; K06118 UDP-sulfoquinovose synthase YP_003136423.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_003136424.1 KEGG: cjr:CJE0867 hypothetical protein YP_003136429.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003136430.1 PFAM: peptidase M23; KEGG: ank:AnaeK_0799 peptidase M23 YP_003136432.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: lch:Lcho_4286 DNA methylase N-4/N-6 domain-containing protein YP_003136433.1 KEGG: lch:Lcho_4287 hypothetical protein YP_003136435.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: vvu:VV2_1034 dihydrofolate reductase YP_003136436.1 KEGG: cps:CPS_1689 hypothetical protein YP_003136437.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dal:Dalk_1184 DNA protecting protein DprA YP_003136438.1 PFAM: methyltransferase type 12; methyltransferase type 11; methionine biosynthesis MetW protein; KEGG: gur:Gura_2592 methyltransferase type 11 YP_003136439.1 PFAM: fatty acid desaturase; KEGG: FAD5; FAD5 (FATTY ACID DESATURASE 5); oxidoreductase YP_003136440.1 PFAM: Aluminium resistance family protein; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: hypothetical protein YP_003136441.1 KEGG: viral A-type inclusion protein YP_003136442.1 PFAM: ribonuclease III; SMART: ribonuclease III; KEGG: pmy:Pmen_1475 ribonuclease III YP_003136444.1 KEGG: gbm:Gbem_0822 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003136445.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: pca:Pcar_2713 magnesium and cobalt transport protein CorA YP_003136446.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bte:BTH_I2156 phosphinothricin acetyltransferase YP_003136447.1 PFAM: protein of unknown function DUF88; KEGG: rme:Rmet_3395 hypothetical protein YP_003136449.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: gme:Gmet_0066 Fmu, rRNA SAM-dependent methyltransferase:Nop2p YP_003136452.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: hypothetical protein YP_003136453.1 KEGG: bxe:Bxe_C1132 hypothetical protein YP_003136454.1 KEGG: lpn:lpg0034 hypothetical protein YP_003136455.1 PFAM: peptidase M16 domain protein; KEGG: similar to processing protease YP_003136456.1 KEGG: mxa:MXAN_3568 hypothetical protein YP_003136457.1 KEGG: Beige/BEACH domain containing protein YP_003136458.1 KEGG: dps:DP0388 hypothetical protein YP_003136459.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: Fe-S oxidoreductase YP_003136460.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: pca:Pcar_1874 anti-anti-sigma regulatory factor YP_003136461.1 PFAM: flavin reductase domain protein FMN-binding; beta-lactamase domain protein; KEGG: hypothetical protein YP_003136464.1 PFAM: PilT protein domain protein; KEGG: lch:Lcho_1565 PilT domain-containing protein YP_003136465.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls the expression of genes coding cell surface proteins involved in motility and growth on nitrogen YP_003136466.1 KEGG: cak:Caul_2972 hypothetical protein YP_003136467.1 KEGG: HLIP; single helix LHC light protein YP_003136469.1 PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: hypothetical protein YP_003136471.1 KEGG: Os02g0533000; hypothetical protein YP_003136472.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: RNase H domain-containing protein YP_003136473.1 PFAM: transposase family protein; KEGG: noc:Noc_1615 transposase YP_003136474.1 PFAM: protein of unknown function DUF29; KEGG: mch:Mchl_3241 protein of unknown function DUF29 YP_003136478.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: dol:Dole_1700 addiction module antitoxin YP_003136479.1 PFAM: protein of unknown function DUF29; KEGG: mch:Mchl_3241 protein of unknown function DUF29 YP_003136480.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_003136481.1 KEGG: CLIP1, RSN; CAP-GLY domain containing linker protein 1; K10421 CAP-Gly domain-containing linker protein 1 YP_003136482.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: cvi:CV_2366 pterin-4-alpha-carbinolamine dehydratase YP_003136483.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hypothetical protein; K03885 NADH dehydrogenase YP_003136484.1 TIGRFAM: REG-2-like, HAD superfamily (subfamily IA) hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hypothetical protein YP_003136485.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dal:Dalk_0014 glycosyl transferase family 2 YP_003136486.1 PFAM: osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: gsu:GSU2483 sensor histidine kinase KdpD YP_003136488.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_003136489.1 KEGG: neu:NE1561 hypothetical protein YP_003136490.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sit:TM1040_2995 GCN5-related N-acetyltransferase YP_003136492.1 PFAM: glycosyl transferase family 28; KEGG: rpe:RPE_2215 glycosyl transferase, family 28 YP_003136493.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pca:Pcar_3004 repressor of mar (multiple antibiotic resistance) operon YP_003136494.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: hypothetical protein, conserved YP_003136495.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003136496.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_003136497.1 catalyzes the formation of oxaloacetate from L-aspartate YP_003136498.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003136499.1 PFAM: type III restriction protein res subunit; N-6 DNA methylase; protein of unknown function DUF450; helicase domain protein; SMART: DEAD-like helicase; KEGG: neu:NE2499 DEAD/DEAH box helicase YP_003136500.1 KEGG: pap:PSPA7_5523 addiction module antidote family protein YP_003136501.1 PFAM: restriction modification system DNA specificity domain; KEGG: mmw:Mmwyl1_3199 restriction modification system DNA specificity subunit YP_003136502.1 TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: mxa:MXAN_6347 chromate transporter YP_003136503.1 KEGG: xlcry-dash; cryptochrome dash; TIGRFAM: cryptochrome, DASH family; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein YP_003136504.1 PFAM: GUN4 domain protein; KEGG: hypothetical protein YP_003136506.1 KEGG: dal:Dalk_4981 hypothetical protein YP_003136507.1 KEGG: viral A-type inclusion protein YP_003136508.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce2144 hypothetical protein YP_003136509.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_003136510.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_003136512.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3805 glycosyl transferase family protein YP_003136513.1 PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_2388 glycosyl transferase family protein YP_003136514.1 KEGG: hypothetical protein YP_003136515.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mxa:MXAN_5926 fumarylacetoacetate hydrolase family protein YP_003136516.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_003136518.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_003136519.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: csa:Csal_1421 ABC transporter YP_003136520.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tbd:Tbd_0035 7Fe ferredoxin YP_003136522.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; hypothetical protein; KEGG: noc:Noc_1156 peptidase S9, prolyl oligopeptidase active site region YP_003136523.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: tbd:Tbd_2549 chemotaxis sensory transducer YP_003136524.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: ilo:IL1110 chemotaxis protein CheW YP_003136525.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rsh:Rsph17029_1257 two component transcriptional regulator YP_003136526.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dac:Daci_1572 response regulator receiver protein YP_003136527.1 KEGG: viral A-type inclusion protein YP_003136529.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bxe:Bxe_A2534 HTH-type transcriptional regulator,YgjM-like YP_003136530.1 KEGG: hap:HAPS_0434 hypothetical protein YP_003136531.1 KEGG: hypothetical protein YP_003136533.1 PFAM: PilT protein domain protein; SMART: nucleotide binding protein PINc; KEGG: gur:Gura_0308 PilT domain-containing protein YP_003136534.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_003136535.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: mxa:MXAN_1345 sigma-54 dependent trancsriptional regulator YP_003136536.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: eca:ECA2414 ABC transporter ATP-binding protein YP_003136539.1 PFAM: MscS Mechanosensitive ion channel; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sit:TM1040_1438 MscS mechanosensitive ion channel YP_003136540.1 KEGG: hypothetical protein YP_003136541.1 PFAM: SCP-like extracellular; SMART: Allergen V5/Tpx-1 family protein; KEGG: hypothetical protein YP_003136542.1 PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: hypothetical protein YP_003136545.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ppd:Ppro_3258 MscS mechanosensitive ion channel YP_003136546.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: lhk:LHK_01045 cobalamin (vitamin B12) biosynthesis CbiM protein YP_003136547.1 KEGG: pca:Pcar_0061 ABC-type transport system, permease component YP_003136548.1 TIGRFAM: cobalt ABC transporter inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: ppd:Ppro_1806 cobalt ABC transporter inner membrane subunit CbiQ YP_003136549.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_1031 ceramide glucosyltransferase YP_003136550.1 KEGG: dal:Dalk_4980 hypothetical protein YP_003136551.1 KEGG: dal:Dalk_4981 hypothetical protein YP_003136552.1 KEGG: sat:SYN_01800 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003136553.1 PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: lpp:lpp2344 hypothetical protein YP_003136554.1 cytochrome f, with cytochrome b6, subunit IV, and the Rieske protein, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_003136555.1 Rieske protein, with cytochrome b6, cytochrome f, and subunit IV, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_003136556.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_003136558.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: scl:sce9192 formate dehydrogenase YP_003136559.1 PFAM: alkaline phosphatase; SMART: alkaline phosphatase; KEGG: rpi:Rpic_3653 alkaline phosphatase YP_003136560.1 PFAM: protein of unknown function DUF1555; KEGG: amc:MADE_02971 nidogen, extracellular region YP_003136561.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dno:DNO_1097 twitching motility regulator PilG YP_003136562.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: nmu:Nmul_A0332 methyl-accepting chemotaxis sensory transducer YP_003136563.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: nmu:Nmul_A0332 methyl-accepting chemotaxis sensory transducer YP_003136564.1 PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: nam:NAMH_0362 chemotaxis protein CheA YP_003136565.1 PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; KEGG: sat:SYN_00430 protein-glutamate methylesterase YP_003136566.1 KEGG: sat:SYN_00434 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase CheR-type; TPR repeat-containing protein; hypothetical protein; SMART: MCP methyltransferase CheR-type; hypothetical protein YP_003136567.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gme:Gmet_2708 CheW protein YP_003136568.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7168 hypothetical protein YP_003136569.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: predicted protein YP_003136570.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003136571.1 PFAM: polysaccharide deacetylase; KEGG: wol:WD0720 polysaccharide deacetylase YP_003136573.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: MOCS2; molybdenum cofactor synthesis 2 YP_003136574.1 PFAM: periplasmic solute binding protein; KEGG: pna:Pnap_1142 periplasmic solute binding protein YP_003136575.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: tcx:Tcr_2148 ABC transporter YP_003136577.1 PFAM: ABC transporter; KEGG: aeh:Mlg_1043 ABC transporter YP_003136578.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_003136579.1 PFAM: aminotransferase class V; KEGG: mno:Mnod_8515 aminotransferase class V YP_003136581.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; methyltransferase; KEGG: glo:Glov_1664 methyltransferase type 11 YP_003136582.1 KEGG: hypothetical protein YP_003136583.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aha:AHA_3529 glyoxylase I family protein YP_003136584.1 PFAM: pentapeptide repeat protein; KEGG: FIP2; FIP2 (FH protein interacting protein 2); voltage-gated potassium channel YP_003136585.1 KEGG: Os01g0338600; hypothetical protein YP_003136586.1 PFAM: microcompartments protein; KEGG: dps:DP1821 carbon dioxide concentrating mechanism protein (PduA related) YP_003136587.1 KEGG: hypothetical protein YP_003136588.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_003136590.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_003136592.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production YP_003136595.1 KEGG: similar to CG32580-PA YP_003136596.1 KEGG: mlo:mll6700 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein YP_003136597.1 KEGG: tgr:Tgr7_1598 hypothetical protein YP_003136598.1 KEGG: scl:sce1778 hypothetical protein YP_003136599.1 PFAM: peptidase M23; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: dvm:DvMF_2292 peptidase M23 YP_003136600.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_003136602.1 PFAM: alpha/beta hydrolase fold protein; KEGG: hydrolase, alpha/beta fold family protein YP_003136603.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_003136604.1 KEGG: maq:Maqu_3110 hypothetical protein YP_003136605.1 KEGG: afw:Anae109_2725 hypothetical protein YP_003136606.1 KEGG: hypothetical protein YP_003136607.1 PFAM: flavin reductase domain protein FMN-binding; flavodoxin/nitric oxide synthase; beta-lactamase domain protein; KEGG: hypothetical protein YP_003136608.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_003136609.1 TIGRFAM: allophycocyanin, subunit beta; PFAM: phycobilisome protein; KEGG: allophycocyanin (APC) B18 chain YP_003136610.1 TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: ank:AnaeK_4385 glutamine synthetase YP_003136611.1 PFAM: protein of unknown function DUF29; KEGG: plu:plu4118 hypothetical protein YP_003136612.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; KEGG: mmw:Mmwyl1_1086 response regulator receiver modulated metal dependent phosphohydrolase YP_003136613.1 PFAM: protein of unknown function DUF752; KEGG: nis:NIS_1599 hypothetical protein YP_003136614.1 PFAM: monooxygenase FAD-binding; KEGG: similar to kynurenine 3-hydroxylase; K00486 kynurenine 3-monooxygenase YP_003136615.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_003136616.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: dds:Ddes_1466 competence/damage-inducible protein CinA YP_003136617.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003136618.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_003136619.1 PFAM: amine oxidase; KEGG: bba:Bd2540 amine oxidase flavin-containing YP_003136620.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_003136621.1 KEGG: scl:sce8434 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein YP_003136622.1 KEGG: cps:CPS_4411 GAF domain/GGDEF domain/EAL domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver YP_003136624.1 KEGG: rpt:Rpal_1321 FAD linked oxidase domain protein; TIGRFAM: glycolate oxidase subunit GlcD; PFAM: FAD linked oxidase domain protein YP_003136627.1 PFAM: 5'-nucleotidase domain protein; protein of unknown function DUF1555; KEGG: rpb:RPB_0803 5'-nucleotidase YP_003136628.1 KEGG: mxa:MXAN_1114 hypothetical protein YP_003136630.1 PFAM: regulatory protein TetR; KEGG: maq:Maqu_1734 TetR family transcriptional regulator YP_003136631.1 KEGG: bid:Bind_1699 hypothetical protein YP_003136632.1 KEGG: sfu:Sfum_0305 hypothetical protein YP_003136633.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_003136635.1 KEGG: hypothetical protein, conserved YP_003136636.1 KEGG: hypothetical protein YP_003136637.1 KEGG: noc:Noc_1566 hypothetical protein YP_003136638.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_2242 hypothetical protein YP_003136641.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_003136642.1 KEGG: hypothetical protein YP_003136643.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_003136644.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_003136645.1 LHL4; KEGG: LHL4; high intensity light-inducible lhc-like gene YP_003136646.1 KEGG: azo:azo2225 GGDEF/EAL/PAS-domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver YP_003136647.1 TIGRFAM: photosystem I reaction center subunit XII; PFAM: photosystem I M family protein YP_003136649.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_1108 hypothetical protein YP_003136650.1 PFAM: YcfA family protein; KEGG: dvu:DVU1491 hypothetical protein YP_003136651.1 KEGG: mno:Mnod_1063 methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B YP_003136652.1 PFAM: glutathione S-transferase domain; glutaredoxin; KEGG: maq:Maqu_3542 glutathione S-transferase domain-containing protein YP_003136653.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003136654.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_003136655.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; pentapeptide repeat protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce7353 protein kinase YP_003136656.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: peptidase M3 family protein / thimet oligopeptidase family protein; K01414 oligopeptidase A YP_003136657.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dde:Dde_0747 ArsR family transcriptional regulator YP_003136658.1 PFAM: metallothionein family 14; KEGG: mno:Mnod_0440 metallothionein family 14 YP_003136659.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sme:SMc03799 hypothetical protein YP_003136660.1 PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: scl:sce2686 WD repeat-containing protein YP_003136661.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_003136662.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: nwi:Nwi_0756 cobalamin synthesis protein, CobW YP_003136663.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: scl:sce4580 hydrogenase expression/formation protein hypD2 YP_003136664.1 PFAM: Fe-S metabolism associated SufE; KEGG: SUFE; cysteine desulfuration protein YP_003136666.1 PFAM: polysaccharide deacetylase; KEGG: cja:CJA_3127 polysaccharide deacetylase, , pda4D YP_003136667.1 PFAM: ferric-uptake regulator; KEGG: abb:ABBFA_002719 ferric uptake regulation protein (ferric uptake regulator) YP_003136668.1 PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: pscA; peptidase S13, D-Ala-D-Ala carboxypeptidase C; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin binding protein 4) YP_003136669.1 KEGG: rso:RS04713 aminotransferase protein YP_003136670.1 KEGG: viral A-type inclusion protein YP_003136672.1 negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_003136673.1 PFAM: rhodanese domainprotein; SMART: Rhodanese domain protein; KEGG: hypothetical protein YP_003136675.1 KEGG: hypothetical protein YP_003136677.1 TIGRFAM: TonB family protein; KEGG: hypothetical protein YP_003136678.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003136679.1 PFAM: pyridoxal-dependent decarboxylase; KEGG: tyrosine decarboxylase, ; K01593 aromatic-L-amino-acid decarboxylase YP_003136680.1 KEGG: pat:Patl_2702 alkaline phosphatase YP_003136681.1 PFAM: PfkB domain protein; KEGG: ecf:ECH74115_2496 kinase, PfkB family YP_003136682.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: vfm:VFMJ11_2564 DNA-damage-inducible protein F YP_003136683.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_003136684.1 KEGG: hypothetical protein YP_003136685.1 KEGG: hypothetical protein YP_003136686.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: mno:Mnod_4596 CopG/Arc/MetJ family transcriptional regulator YP_003136687.1 KEGG: hypothetical protein YP_003136688.1 PFAM: ABC transporter; transport system permease protein; KEGG: aeh:Mlg_1043 ABC transporter YP_003136689.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: gme:Gmet_1431 NAD-dependent epimerase/dehydratase YP_003136690.1 KEGG: gur:Gura_2308 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_003136691.1 PFAM: peptidase M16 domain protein; KEGG: ecn:Ecaj_0775 insulinase-like:peptidase M16, C-terminal YP_003136692.1 PFAM: fructosamine kinase; aminoglycoside phosphotransferase; KEGG: nmu:Nmul_A2329 fructosamine kinase YP_003136693.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_003136694.1 KEGG: dal:Dalk_4882 hypothetical protein YP_003136695.1 SMART: ATPase AAA; KEGG: dal:Dalk_4883 ATPase-like protein YP_003136696.1 TIGRFAM: hypothetical protein; KEGG: rso:RS00354 rhs-related transmembrane protein YP_003136697.1 TIGRFAM: hypothetical protein; KEGG: hch:HCH_03784 rhs family protein YP_003136698.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_003136699.1 KEGG: Os05g0516400; hypothetical protein YP_003136701.1 KEGG: hypothetical protein YP_003136702.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: cja:CJA_3450 glycosyl transferase, , gt2E YP_003136703.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: dal:Dalk_1693 NAD-dependent epimerase/dehydratase YP_003136704.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: hypothetical protein YP_003136706.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_003136707.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dal:Dalk_2725 short-chain dehydrogenase/reductase SDR YP_003136708.1 KEGG: hypothetical protein; K01495 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I YP_003136709.1 PFAM: hypothetical protein; KEGG: afw:Anae109_4044 hypothetical protein YP_003136710.1 PFAM: protein of unknown function CP12; KEGG: hypothetical protein YP_003136711.1 KEGG: hypothetical protein, conserved YP_003136712.1 KEGG: hypothetical protein YP_003136713.1 KEGG: cla:Cla_1110 branched-chain amino-acid ABC transporter periplasmic binding protein YP_003136715.1 KEGG: hypothetical protein YP_003136716.1 PFAM: peptidase M50; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: noc:Noc_1011 peptidase M50 YP_003136717.1 KEGG: pmy:Pmen_3397 hypothetical protein YP_003136719.1 PFAM: alpha/beta hydrolase fold protein; KEGG: hypothetical protein YP_003136720.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: ktn1; kinectin 1 (kinesin receptor) YP_003136721.1 PFAM: nucleotidyl transferase; KEGG: azo:azo2231 mannose-1-phosphate guanylyltransferase YP_003136722.1 KEGG: mlo:mll3440 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003136723.1 PFAM: CheC domain protein; KEGG: met:M446_2046 CheC, inhibitor of MCP methylation YP_003136724.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: abo:ABO_0265 PilH family regulatory protein YP_003136725.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mxa:MXAN_4591 serine/threonine-protein kinase PKN1 YP_003136726.1 KEGG: maq:Maqu_0155 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_003136727.1 PFAM: protein of unknown function DUF81; KEGG: mes:Meso_0026 protein of unknown function DUF81 YP_003136728.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: similar to CpcE-related prtein YP_003136729.1 KEGG: mxa:MXAN_5783 pilin YP_003136730.1 PFAM: hypothetical protein; Domain of unknown function DUF1863; SMART: hypothetical protein; TIR protein; KEGG: hypothetical protein YP_003136732.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tgr:Tgr7_1070 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003136733.1 KEGG: pub:SAR11_1321 hypothetical protein YP_003136734.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter; SMART: ATPase AAA; KEGG: bba:Bd1221 ABC-type dipeptide transport system, ATPase component YP_003136735.1 KEGG: hypothetical protein YP_003136738.1 ClpR variant present in an operon with ClpP3 in Synechococcus PCC7942; ClpR is missing the catalytic triad Ser-His-Asp characteristic of serine-type proteases; the exact function of ClpR and ClpP3 is unknown however they appear to be necessary for cell viability; hydrolyzes proteins to small peptides; with the ATPases ClpA or ClpX, ClpP degrades specific substrates YP_003136739.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_003136740.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003136741.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_003136742.1 PFAM: peptidase M1 membrane alanine aminopeptidase; PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: scl:sce8633 aminopeptidase YP_003136743.1 PFAM: methyltransferase type 11; thiopurine S-methyltransferase; methyltransferase type 12; KEGG: bid:Bind_2424 methyltransferase type 11 YP_003136744.1 PFAM: hypotheticalprotein; KEGG: pha:PSHAa1483 hypothetical protein YP_003136746.1 PFAM: pentapeptide repeat protein; KEGG: mms:mma_2224 pentapeptide repeat-containing protein YP_003136747.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_003136748.1 PFAM: shikimate kinase; KEGG: hypothetical protein YP_003136750.1 KEGG: hypothetical protein; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; ATPase AAA; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA YP_003136752.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: pol:Bpro_1551 histone-like DNA-binding protein YP_003136754.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_003136755.1 KEGG: cps:CPS_1870 cyanophycinase; TIGRFAM: cyanophycinase; PFAM: peptidase S51 dipeptidase E YP_003136756.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_003136757.1 PFAM: protein of unknown function DUF820; KEGG: hha:Hhal_1924 hypothetical protein YP_003136758.1 PFAM: hypothetical protein; KEGG: sil:SPOA0363 hypothetical protein YP_003136759.1 PFAM: GAF domain protein; histidine kinase A domain protein; SMART: GAF domain protein; histidine kinase A domain protein; KEGG: hha:Hhal_1118 GAF sensor signal transduction histidine kinase YP_003136760.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: oan:Oant_1392 hypotheticalprotein YP_003136761.1 KEGG: NUMA1; nuclear mitotic apparatus protein 1 YP_003136762.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_003136763.1 KEGG: cja:CJA_1584 RloA protein YP_003136764.1 KEGG: cja:CJA_1583 CRISPR-associated protein, Csm2 family YP_003136765.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bmc:BAbS19_II04740 transporter DME family YP_003136766.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_003136767.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: scl:sce4330 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_003136769.1 TIGRFAM: phosphonate C-P lyase system protein PhnG; KEGG: tbd:Tbd_2296 hypothetical protein YP_003136770.1 TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: tcx:Tcr_2083 carbon-phosphorus lyase complex subunit YP_003136771.1 PFAM: phosphonate metabolism; KEGG: pin:Ping_3690 phosphonate metabolism YP_003136772.1 PFAM: carbonic anhydrase; protein of unknown function DUF1555; Cna B domain protein; KEGG: dar:Daro_3922 carbonic anhydrase YP_003136773.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF472; protein of unknown function DUF471; KEGG: aha:AHA_2669 hypothetical protein YP_003136774.1 KEGG: acp:A2cp1_1693 protein of unknown function DUF470 YP_003136775.1 PFAM: esterase; KEGG: bcm:Bcenmc03_5166 esterase YP_003136777.1 KEGG: tsuA; protein serine/threonine kinase; K06228 fused YP_003136779.1 PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ SMART: heat shock protein DnaJ KEGG: dde:Dde_1659 heat shock protein DnaJ-like YP_003136780.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_003136781.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pha:PSHAa1834 hypothetical protein YP_003136782.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pha:PSHAa1835 beta-ureidopropionase YP_003136783.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_003136784.1 KEGG: sfr:Sfri_2083 hypothetical protein YP_003136785.1 KEGG: eba:ebA1134 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase YP_003136786.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: xoo:XOO0607 modification methylase XorII YP_003136788.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_003136789.1 KEGG: ara:Arad_0471 helix-turn-helix protein, CopG YP_003136790.1 KEGG: amc:MADE_00608 hypothetical protein YP_003136791.1 KEGG: ppd:Ppro_2579 hypothetical protein YP_003136792.1 KEGG: ppd:Ppro_1272 hypothetical protein YP_003136793.1 PFAM: PfkB domain protein; KEGG: hypothetical protein YP_003136794.1 PFAM: ferredoxin thioredoxin reductase alpha chain; KEGG: similar to ferredoxin-thioredoxin reductase, variable chain YP_003136796.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4237 hypothetical protein YP_003136797.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis YP_003136798.1 TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: fta:FTA_0524 S-adenosylmethionine decarboxylase YP_003136800.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis YP_003136801.1 KEGG: dvm:DvMF_0210 extracellular ligand-binding receptor YP_003136802.1 KEGG: scl:sce1777 phosphoserine phosphatase; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein YP_003136803.1 PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; KEGG: sit:TM1040_2326 beta-Ig-H3/fasciclin YP_003136804.1 KEGG: lpc:LPC_0295 hypothetical protein YP_003136806.1 KEGG: sfu:Sfum_2929 radical SAM protein; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003136807.1 Catalyzes the transfer of electrons from NADH to quinone YP_003136808.1 Catalyzes the transfer of electrons from NADH to quinone YP_003136809.1 Catalyzes the transfer of electrons from NADH to quinone YP_003136810.1 Catalyzes the transfer of electrons from NADH to quinone YP_003136811.1 PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; KEGG: bja:bll5191 hypothetical protein YP_003136812.1 binds the polymerase to DNA and acts as a sliding clamp YP_003136813.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_1755 ABC transporter YP_003136814.1 PFAM: ABC transporter; KEGG: sfu:Sfum_1754 ABC-type transport system involved in multi-copper enzyme maturation, permease component YP_003136815.1 KEGG: sfu:Sfum_1753 ABC-type transport system involved in gliding motility auxiliary component-like YP_003136817.1 KEGG: nmu:Nmul_A1088 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003136818.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gsu:GSU1097 phosphate ABC transporter permease protein YP_003136819.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A1086 phosphate ABC transporter permease YP_003136820.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: gsu:GSU1099 phosphate ABC transporter periplasmic phosphate-binding protein YP_003136821.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_003136822.1 KEGG: Os03g0183100; hypothetical protein YP_003136823.1 KEGG: cak:Caul_5026 cobyrinic acid ac-diamide synthase YP_003136824.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen III synthase HEM4; KEGG: ppd:Ppro_3374 uroporphyrin-III C-methyltransferase YP_003136826.1 KEGG: Os08g0422000; hypothetical protein YP_003136828.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: hypothetical protein YP_003136830.1 PFAM: glycosyl transferase group 1; KEGG: tgr:Tgr7_2096 glycosyltransferase YP_003136831.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce0956 hypothetical protein YP_003136832.1 KEGG: ppd:Ppro_1151 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein YP_003136833.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_003136834.1 PFAM: esterase; KEGG: pat:Patl_2339 esterase YP_003136835.1 catalyzes the transfer of electrons from NADH to quinones YP_003136836.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_003136837.1 Catalyzes the transfer of electrons from NADH to quinone YP_003136838.1 KEGG: hypothetical protein YP_003136841.1 KEGG: noc:Noc_1740 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003136843.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: sat:SYN_00864 potassium/proton antiporter YP_003136844.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: hypothetical protein YP_003136846.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: mca:MCA1010 RNA-binding protein YP_003136847.1 KEGG: hypothetical protein YP_003136848.1 KEGG: hypothetical protein YP_003136849.1 PFAM: 4-vinyl reductase 4VR; KEGG: dal:Dalk_1478 4-vinyl reductase 4VR YP_003136852.1 PFAM: 4-vinyl reductase 4VR YP_003136853.1 PFAM: ferredoxin; KEGG: afw:Anae109_0642 ferredoxin YP_003136854.1 PFAM: phycobilisome protein; KEGG: viral A-type inclusion protein YP_003136855.1 TIGRFAM: ferredoxin [2Fe-2S]; PFAM: ferredoxin; KEGG: ferredoxin YP_003136856.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003136857.1 PFAM: restriction endonuclease; KEGG: sfu:Sfum_2534 restriction endonuclease YP_003136858.1 KEGG: hypothetical protein YP_003136859.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: hypothetical protein; K04487 cysteine desulfurase YP_003136860.1 KEGG: gme:Gmet_3192 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_003136861.1 PFAM: ribonuclease HII/HIII; KEGG: vei:Veis_1452 ribonuclease H YP_003136862.1 KEGG: hypothetical protein YP_003136863.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: gbm:Gbem_3260 chorismate mutase YP_003136864.1 PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein; KEGG: ATP-dependent protease La (LON) domain-containing protein YP_003136867.1 PFAM: glycerophosphoryl diester phosphodiesterase; protein of unknown function DUF1555; KEGG: aav:Aave_1298 glycerophosphoryl diester phosphodiesterase YP_003136868.1 PFAM: endonuclease/exonuclease/phosphatase; protein of unknown function DUF1555; KEGG: mno:Mnod_1936 endonuclease/exonuclease/phosphatase YP_003136869.1 PFAM: protein of unknown function DUF1555; KEGG: mca:MCA0365 hypothetical protein YP_003136870.1 PFAM: protein of unknown function DUF1555; KEGG: mno:Mnod_1936 endonuclease/exonuclease/phosphatase YP_003136872.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_003136873.1 KEGG: Os02g0276500; hypothetical protein; K09834 tocopherol cyclase YP_003136874.1 TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; KEGG: cjd:JJD26997_1353 lipoprotein A YP_003136875.1 catalyzes the formation of pantothenate from pantoate and beta-alanine and the formation of cytidine diphosphate from cytidine monophosphate YP_003136876.1 KEGG: xau:Xaut_2728 hypothetical protein YP_003136878.1 PFAM: YiaAB two helix domain protein; KEGG: npu:Npun_F0110 YiaAB two helix domain-containing protein YP_003136879.1 PFAM: PfkB domain protein; KEGG: mar:MAE_27510 sugar kinase YP_003136880.1 PFAM: protein of unknown function UPF0016; KEGG: mar:MAE_06240 hypothetical protein YP_003136881.1 PFAM: protein of unknown function UPF0016; KEGG: syn:ssr1558 hypothetical protein YP_003136882.1 KEGG: syp:SYNPCC7002_A0869 esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: esterase YP_003136883.1 PFAM: transglutaminase; SMART: transglutaminase; KEGG: syn:sll1049 hypothetical protein YP_003136886.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_003136887.1 KEGG: hypothetical protein LOC100205541 YP_003136888.1 PFAM: BRCT domain protein; SMART: BRCT domain protein; KEGG: viral A-type inclusion protein YP_003136889.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_003136890.1 TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; peptidase S14 ClpP; KEGG: aha:AHA_3358 signal peptide peptidase SppA, 67K type YP_003136891.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mxa:MXAN_3285 S8A family peptidase YP_003136892.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: ecp:ECP_0787 virulence protein GipA YP_003136893.1 KEGG: vfm:VFMJ11_A1189 acetyltransferase/hydrolase family protein YP_003136894.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_003136895.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: mca:MCA1016 dioxygenase, iron-sulfur subunit YP_003136897.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: asa:ASA_1412 segregation and condensation protein B YP_003136898.1 KEGG: hypothetical protein YP_003136900.1 KEGG: glo:Glov_1130 transcriptional regulator, XRE family YP_003136901.1 KEGG: hypothetical protein YP_003136902.1 KEGG: bja:blr2114 hypothetical protein YP_003136903.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: hypothetical protein YP_003136904.1 PFAM: cytochrome P450; KEGG: scl:sce3065 cytochrome P450 CYP110H1 YP_003136905.1 KEGG: azo:azo0350 hypothetical protein YP_003136907.1 PFAM: mannose-6-phosphate isomerase type II; Cupin 2 conserved barrel domain protein; KEGG: gur:Gura_3271 mannose-6-phosphate isomerase YP_003136908.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: hypothetical protein; K03564 peroxiredoxin Q/BCP YP_003136909.1 KEGG: she:Shewmr4_2058 radical activating enzyme YP_003136910.1 PFAM: SCP-like extracellular; KEGG: hypothetical protein YP_003136911.1 PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; KEGG: nha:Nham_0179 3'-5' exonuclease YP_003136912.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: NIFU1; iron-sulfur cluster assembly protein YP_003136914.1 PFAM: protein of unknown function DUF307; KEGG: rpa:RPA0774 hypothetical protein YP_003136917.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppu:PP_4454 opine ABC transporter permease protein YP_003136918.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential YP_003136921.1 PFAM: protein of unknown function DUF540; KEGG: pca:Pcar_1024 CysZ protein YP_003136922.1 KEGG: serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003136923.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_003136924.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain protein; KEGG: PtrTrxy1; thioredoxin y YP_003136926.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_003136928.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: binding YP_003136929.1 TIGRFAM: serine O-acetyltransferase; KEGG: pca:Pcar_1862 serine O-acetyltransferase YP_003136930.1 PFAM: protein of unknown function DUF1400; Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: rso:RS03192 lipoprotein signal peptide YP_003136931.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003136932.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dde:Dde_1429 extracellular solute-binding protein YP_003136933.1 KEGG: sde:Sde_2463 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_003136934.1 KEGG: sfu:Sfum_2304 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAC repeat-containing protein; PAS domain containing protein YP_003136935.1 KEGG: hypothetical protein LOC684288 YP_003136937.1 Psb29; involved in biogenesis of the photosystem II; in Arabidopsis it interacts with the heterotrimeric G-protein (GPA1) and seems to be involved in a D-glucose signaling mechanism between plastid and the plasma membranes YP_003136938.1 KEGG: hypothetical protein YP_003136939.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP YP_003136940.1 PFAM: acireductone dioxygenase; KEGG: afr:AFE_0433 dioxygenase, ARD/ARD' family YP_003136942.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_003136943.1 PFAM: thioesterase superfamily protein; KEGG: similar to 4-hydroxybenzoyl-CoA thioesterase; K07107 YP_003136944.1 PFAM: glycosyl transferase group 1; KEGG: xac:XAC0731 hypothetical protein YP_003136945.1 PFAM: glycosyl transferase group 1; KEGG: gur:Gura_2339 glycosyl transferase, group 1 YP_003136946.1 PFAM: glycosyl transferase family 2; KEGG: sat:SYN_00822 glycosyltransferase involved in cell wall biogenesis YP_003136947.1 KEGG: lip:LIC085 glycosyl transferase YP_003136948.1 PFAM: metallophosphoesterase; KEGG: hypothetical protein YP_003136949.1 PFAM: hypothetical protein; KEGG: hypothetical protein YP_003136950.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_003136951.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003136952.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003136955.1 PFAM: conserved hypothetical protein; KEGG: geo:Geob_1537 hypothetical protein YP_003136956.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_003136958.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: dar:Daro_3546 cyclic nucleotide-binding YP_003136960.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_003136961.1 PFAM: peptidase domain protein; KEGG: smt:Smal_3212 hypothetical protein YP_003136963.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: gur:Gura_3980 peptidoglycan glycosyltransferase YP_003136965.1 KEGG: ret:RHE_CH02448 hypothetical protein YP_003136967.1 PFAM: phycobilisome degradation protein nblA; KEGG: phycobilisome degradation protein YP_003136968.1 PFAM: phycobilisome degradation protein nblA YP_003136969.1 KEGG: nis:NIS_1768 N-acetyl-L-amino acid amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003136970.1 FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP. YP_003136971.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_003136972.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: kpe:KPK_A0061 arsenical resistance protein ArsH YP_003136974.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_003136975.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: hha:Hhal_0078 glycerol kinase YP_003136976.1 PFAM: CoA-binding protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: dno:DNO_1313 succinyl-CoA synthetase, alpha subunit YP_003136977.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: geo:Geob_0398 chaperonin GroEL YP_003136978.1 PFAM: resolvase domain protein; KEGG: xfm:Xfasm12_1564 hypothetical protein YP_003136979.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; resolvase domain protein; KEGG: xfm:Xfasm12_1564 hypothetical protein YP_003136980.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: xfm:Xfasm12_1564 hypothetical protein YP_003136981.1 PFAM: NUDIX hydrolase; KEGG: sat:SYN_00539 phosphohydrolase YP_003136982.1 KEGG: cbg:CbuG_1666 hypothetical cytosolic protein YP_003136983.1 KEGG: tmz:Tmz1t_2115 peptidase M15A YP_003136984.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ank:AnaeK_3641 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003136985.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_003136986.1 PFAM: MscS Mechanosensitive ion channel; KEGG: smd:Smed_3001 MscS mechanosensitive ion channel YP_003136987.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003136988.1 PFAM: PemK family protein; KEGG: cak:Caul_3898 toxin ChpA YP_003136989.1 PFAM: SpoVT/AbrB domain protein; KEGG: elf:LF82_0305 PemI-like protein 1 YP_003136990.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; AAA ATPase; KEGG: sfu:Sfum_0872 single-stranded nucleic acid binding R3H domain protein YP_003136991.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hypothetical protein YP_003136992.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bph:Bphy_5651 GCN5-related N-acetyltransferase YP_003136993.1 PFAM: oxidoreductase domain protein; KEGG: bcs:BCAN_B0113 hypothetical protein YP_003136994.1 TIGRFAM: ferredoxin [2Fe-2S]; PFAM: ferredoxin; KEGG: ferredoxin YP_003136995.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_B3514 acyl-CoA synthetase YP_003136996.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate YP_003136997.1 KEGG: mms:mma_2138 ATP-dependent DNA helicase YP_003136998.1 PsbW; part of the phosystem II reaction center YP_003136999.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: afw:Anae109_1304 molybdenum cofactor synthesis domain-containing protein YP_003137000.1 PFAM: protein of unknown function DUF1400; KEGG: hypothetical protein YP_003137002.1 PFAM: exopolysaccharide synthesis protein ExoD; KEGG: smd:Smed_3473 exopolysaccharide synthesis ExoD YP_003137003.1 TIGRFAM: calcium-translocating P-type ATPase, PMCA-type; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; haloacid dehalogenase; KEGG: glo:Glov_2573 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_003137004.1 PFAM: glycosyl transferase family 2; KEGG: rec:RHECIAT_CH0003456 glycosyltransferase protein, family 2 YP_003137005.1 PFAM: hypothetical protein; hypothetical protein; hypotheticalprotein; Tetratricopeptide TPR_3; Sel1 domain protein repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0166 hypotheticalprotein YP_003137006.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: hypothetical protein; K02834 ribosome-binding factor A YP_003137007.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: acp:A2cp1_4420 glycoside hydrolase family 3 domain protein YP_003137008.1 PFAM: protein of unknown function DUF151; KEGG: sfu:Sfum_0418 protein of unknown function DUF151 YP_003137009.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_003137012.1 KEGG: hypothetical protein YP_003137013.1 KEGG: glo:Glov_1638 type II secretion system protein E YP_003137014.1 PFAM: phycobilisome protein; KEGG: allophycocyanin (APC) alpha chain YP_003137016.1 KEGG: bur:Bcep18194_B2051 hypotheticalprotein YP_003137017.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: ank:AnaeK_1656 ammonium transporter YP_003137018.1 KEGG: hypothetical protein; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding YP_003137019.1 PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: hypothetical protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) YP_003137020.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_003137021.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: noc:Noc_0378 5-oxoprolinase (ATP-hydrolyzing) YP_003137022.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: xcv:XCV1174 two-component system response regulator PilH family YP_003137023.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; TrkA-N domain protein; NmrA family protein; KEGG: Os02g0234500; hypothetical protein YP_003137024.1 PFAM: protein of unknown function DUF29 YP_003137025.1 TIGRFAM: photosystem q(b) protein; PFAM: photosynthetic reaction centre protein; KEGG: psbA; PSII D1-protein; K02703 photosystem II PsbA protein YP_003137026.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce1796 hypothetical protein YP_003137030.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: gme:Gmet_1622 CMP/dCMP deaminase, zinc-binding protein YP_003137031.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_003137032.1 KEGG: nam:NAMH_0358 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_003137034.1 PFAM: thymidylate synthase; KEGG: hypothetical protein; K00560 thymidylate synthase YP_003137035.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003137037.1 KEGG: pmy:Pmen_4476 hypothetical protein YP_003137038.1 PFAM: protein of unknown function DUF897; KEGG: mpt:Mpe_A0139 hypothetical protein YP_003137039.1 KEGG: acp:A2cp1_2216 dTMP kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase YP_003137040.1 PFAM: nitrogen-fixing NifU domain protein; Rieske [2Fe-2S] domain protein; KEGG: bbt:BBta_0469 nitrogen-fixing NifU, Rieske (2Fe-2S) region YP_003137041.1 KEGG: msl:Msil_3756 hypothetical protein YP_003137042.1 KEGG: bbt:BBta_0467 hypothetical protein YP_003137043.1 KEGG: bbt:BBta_0466 hypothetical protein YP_003137044.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7056 hypothetical protein YP_003137046.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: sbm:Shew185_2566 cobyrinic acid ac-diamide synthase YP_003137049.1 PFAM: hypothetical protein; KEGG: msl:Msil_1082 hypothetical protein YP_003137050.1 PFAM: RNA methylase; THUMP domain protein; KEGG: gsu:GSU3086 hypothetical protein YP_003137051.1 PFAM: phosphoesterase HXTX; KEGG: gbm:Gbem_0107 2'-5' RNA ligase YP_003137052.1 PFAM: YCII-related; KEGG: hypothetical protein YP_003137053.1 PFAM: GAF domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: rpa:RPA1796 adenylate/guanylate cyclase YP_003137054.1 PFAM: GCN5-related N-acetyltransferase; KEGG: GCN5-related N-acetyltransferase (GNAT) family protein YP_003137056.1 PFAM: extracellular ligand-binding receptor; KEGG: dvu:DVU0738 substrate-binding protein YP_003137057.1 PFAM: general secretory system II protein E domain protein; type II secretion system protein E; KEGG: sat:SYN_01549 general secretion pathway protein E YP_003137058.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_003137060.1 KEGG: scl:sce8434 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; GAF domain protein; response regulator receiver; hypothetical protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein YP_003137061.1 KEGG: mxa:MXAN_5578 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003137062.1 KEGG: hypothetical protein YP_003137063.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: afe:Lferr_1378 cobyrinic acid ac-diamide synthase YP_003137064.1 KEGG: hypothetical protein, conserved YP_003137065.1 part of the core of the reaction center of photosystem I YP_003137066.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: geo:Geob_3446 single-stranded-DNA-specific exonuclease RecJ YP_003137068.1 KEGG: apj:APJL_1764 hypothetical protein YP_003137069.1 negatively supercoils closed circular double-stranded DNA YP_003137070.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: mpt:Mpe_B0029 AAA+ class-like ATPase YP_003137071.1 KEGG: hypothetical protein YP_003137072.1 PFAM: O-antigen polymerase; KEGG: vei:Veis_2478 O-antigen polymerase YP_003137073.1 PFAM: DSH domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: hypothetical protein YP_003137075.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: rso:RSc1291 tRNA pseudouridine synthase B YP_003137076.1 PFAM: protein of unknown function DUF564; KEGG: predicted protein YP_003137077.1 PFAM: phosphoesterase RecJ domain protein; KEGG: dat:HRM2_40810 hypothetical protein YP_003137078.1 PFAM: protein of unknown function DUF62; KEGG: sat:SYN_00195 cytoplasmic protein YP_003137081.1 PFAM: protein of unknown function DUF558; KEGG: xom:XOO_1689 hypothetical protein YP_003137084.1 KEGG: hch:HCH_04480 flagellar hook capping protein YP_003137085.1 PFAM: protein of unknown function DUF433; KEGG: rpe:RPE_2627 protein of unknown function DUF433 YP_003137086.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; hypothetical protein; hypotheticalprotein; Tetratricopeptide TPR_3; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; Sel1 domain protein repeat-containing protein; RNA-processing protein HAT helix repeating-containing protein; KEGG: mno:Mnod_2480 peptidase C14 caspase catalytic subunit P20 YP_003137087.1 PFAM: Conserved hypothetical protein; KEGG: sat:SYN_02631 hypothetical protein YP_003137089.1 interacts with the circadian clock regulator KaiC to maintain circadian rhythms YP_003137090.1 PFAM: Domain of unknown function DUF1957; glycoside hydrolase family 57; KEGG: ade:Adeh_1076 glycoside hydrolase family protein YP_003137091.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mes:Meso_2516 6-phosphogluconate dehydrogenase, NAD-binding YP_003137093.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: lpp:lpp2964 hypothetical protein YP_003137094.1 KEGG: hypothetical protein; K09835 carotenoid isomerase; TIGRFAM: carotene isomerase; PFAM: FAD dependent oxidoreductase YP_003137095.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mmw:Mmwyl1_0961 integral membrane sensor hybrid histidine kinase YP_003137096.1 PFAM: ABC transporter; KEGG: hypothetical protein YP_003137097.1 PFAM: MscS Mechanosensitive ion channel; pleckstrin/ G-protein interacting- domain protein; SMART: pleckstrin/ G-protein interacting- domain protein; KEGG: pca:Pcar_2988 small-conductance mechanosensitive channel YP_003137098.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_003137099.1 KEGG: hypothetical protein, conserved YP_003137100.1 KEGG: hypothetical protein YP_003137101.1 KEGG: gme:Gmet_2402 hypothetical protein YP_003137102.1 involved in de novo purine biosynthesis YP_003137103.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003137104.1 PFAM: cupin; KEGG: nmu:Nmul_A0995 cupin region YP_003137105.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: smd:Smed_4281 NmrA family protein YP_003137106.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: afw:Anae109_3933 NAD-dependent epimerase/dehydratase YP_003137107.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003137108.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: dno:DNO_0576 hypothetical protein YP_003137111.1 KEGG: ank:AnaeK_0760 ribonuclease H YP_003137112.1 PFAM: protein of unknown function DUF1294; Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pap:PSPA7_3336 hypothetical protein YP_003137115.1 PFAM: ABC transporter; ABC transporter; SbmABacA family protein; SMART: ATPase AAA; KEGG: reh:H16_A2170 ABC-type transporter ATPase and permease components: P-FAT family YP_003137119.1 KEGG: mlo:mll0572 hypothetical protein YP_003137120.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003137121.1 PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: eba:p1B202 transposase YP_003137122.1 PFAM: transposase IS200-family protein; KEGG: pmr:PMI1001 IS element transposase YP_003137123.1 KEGG: pfo:Pfl01_4059 hypothetical protein YP_003137125.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: xau:Xaut_0362 1A family penicillin-binding protein YP_003137126.1 PFAM: alpha/beta hydrolase fold protein; KEGG: pin:Ping_2087 alpha/beta hydrolase fold protein YP_003137127.1 Ycf7; cytochrome b6-f complex subunit 6; with PetG, PetM and PetN makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_003137128.1 PFAM: histone deacetylase superfamily; KEGG: pub:SAR11_0460 histone deacetylase family protein YP_003137129.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: avn:Avin_05900 transposase IS891/IS1136/IS1341 YP_003137130.1 PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: gme:Gmet_2614 GAF sensor protein YP_003137131.1 KEGG: gur:Gura_0876 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; Forkhead-associated protein; GGDEF domain containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; Forkhead-associated protein; PAS domain containing protein YP_003137132.1 KEGG: hch:HCH_00794 PAS/PAC domain-containing protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003137133.1 KEGG: tgr:Tgr7_1990 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; response regulator receiver; PAS domain containing protein YP_003137134.1 PFAM: pseudouridine synthase; KEGG: vcj:VCD_003202 ribosomal large subunit pseudouridine synthase E YP_003137135.1 KEGG: hypothetical protein, conserved YP_003137136.1 PFAM: phycobilisome linker polypeptide; KEGG: phycobilisome rod-core linker polypeptide YP_003137137.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_003137138.1 PFAM: O-antigen polymerase; KEGG: vei:Veis_2478 O-antigen polymerase YP_003137139.1 PFAM: cytochrome P450; KEGG: scl:sce3065 cytochrome P450 CYP110H1 YP_003137140.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vpa:VP1373 acetyltransferase YP_003137141.1 KEGG: mca:MCA1149 hypothetical protein YP_003137142.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gur:Gura_0178 peptidylprolyl isomerase, FKBP-type YP_003137143.1 KEGG: gbm:Gbem_0005 DNA gyrase, subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_003137144.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: mpo:Mpop_0906 response regulator receiver protein YP_003137145.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: stage II sporulation D domain protein; KEGG: ppd:Ppro_1802 SpoIID/LytB domain-containing protein YP_003137146.1 KEGG: mca:MCA1149 hypothetical protein YP_003137147.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: similar to coenzyme F420-reducing hydrogenase, beta subunit; K00441 coenzyme F420 hydrogenase subunit beta YP_003137148.1 PFAM: tryptophan halogenase; KEGG: bac:BamMC406_5264 tryptophan halogenase YP_003137149.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: dol:Dole_0374 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_003137151.1 PFAM: MltA domain protein; 3D domain protein; KEGG: sat:SYN_02504 membrane-bound lytic murein transglycosylase A YP_003137152.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: gur:Gura_0187 ATPase YP_003137153.1 KEGG: bgl:bglu_2g10720 hypothetical protein YP_003137154.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003137156.1 PFAM: Amidase; KEGG: dal:Dalk_0731 amidase YP_003137157.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce2003 hypothetical protein YP_003137158.1 transfers the fatty acyl group on membrane lipoproteins YP_003137160.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: phosphoglycerate mutase; KEGG: bba:Bd1011 phosphohistidine phosphatase YP_003137161.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_003137162.1 PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: eba:p1B202 transposase YP_003137163.1 PFAM: transposase IS200-family protein; KEGG: pmr:PMI1001 IS element transposase YP_003137164.1 PFAM: protein of unknown function DUF29; KEGG: mrd:Mrad2831_1125 hypothetical protein YP_003137166.1 PFAM: Haem oxygenase-like; KEGG: heme oxygenase 2-like YP_003137167.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: hypothetical protein, conserved YP_003137168.1 KEGG: hypothetical protein, conserved YP_003137169.1 PFAM: protein of unknown function DUF1001; KEGG: hypothetical protein, conserved YP_003137170.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003137171.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003137172.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sde:Sde_0176 methylase involved in ubiquinone/menaquinone biosynthesis-like YP_003137173.1 PFAM: glutathione S-transferase domain; KEGG: nwi:Nwi_2981 glutathione S-transferase YP_003137174.1 PFAM: protein of unknown function DUF255; KEGG: dat:HRM2_15540 hypothetical protein YP_003137175.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein YP_003137176.1 PFAM: protein of unknown function DUF364; KEGG: mca:MCA2834 hypothetical protein YP_003137177.1 PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: afr:AFE_0462 D-alanyl-D-alanine dipeptidase YP_003137178.1 PFAM: M penetrans paralogue 2 domain protein; KEGG: hypothetical protein YP_003137179.1 PFAM: peptidase M23; KEGG: lip:LI0920 membrane proteins related to metalloendopeptidases YP_003137180.1 KEGG: sfu:Sfum_2349 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain YP_003137181.1 KEGG: sfu:Sfum_2351 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003137182.1 PFAM: glycoside hydrolase family 37; KEGG: lpp:lpp1844 hypothetical protein YP_003137184.1 KEGG: dal:Dalk_5109 hypothetical protein YP_003137186.1 KEGG: MFT7; MATE efflux family protein YP_003137188.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: dno:DNO_0576 hypothetical protein YP_003137189.1 KEGG: ppw:PputW619_2987 hypothetical protein YP_003137190.1 PFAM: conserved hypothetical protein; KEGG: sun:SUN_1999 hypothetical protein YP_003137191.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: ccs:CCNA_03113 membrane-associated phospholipid phosphatase YP_003137192.1 PFAM: glycosyl transferase family 39; KEGG: hypothetical protein, conserved YP_003137193.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003137194.1 PFAM: FAD linked oxidase; KEGG: bbt:BBta_1268 hypothetical protein YP_003137195.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_3382 heavy metal sensor signal transduction histidine kinase YP_003137196.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bph:Bphy_3965 two component transcriptional regulator YP_003137197.1 KEGG: A-agglutinin attachment subunit precursor YP_003137198.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_1294 ribosomal-protein-alanine acetyltransferase YP_003137199.1 PFAM: ATPase AAA; ATPase AAA central domain protein; UvrB/UvrC protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; KEGG: hypothetical protein; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC YP_003137200.1 KEGG: lch:Lcho_1808 TIR protein YP_003137203.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003137204.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit) YP_003137205.1 PFAM: glycosyl transferase family 2; KEGG: mca:MCA1166 glycosyl transferase, group 2 family protein YP_003137206.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_003137208.1 KEGG: dat:HRM2_32220 diguanylate cyclase (GGDEF) domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; GAF domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein YP_003137210.1 KEGG: glo:Glov_2284 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003137211.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: rlt:Rleg2_1885 CrcB protein YP_003137212.1 catalyzes the formation of glutamate from glutamine YP_003137213.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: pap:PSPA7_1429 chemotaxis transducer YP_003137214.1 KEGG: pfs:PFLU1221 chemotaxis-related methyltransferase; PFAM: MCP methyltransferase CheR-type; TPR repeat-containing protein; hypothetical protein; SMART: MCP methyltransferase CheR-type; hypothetical protein YP_003137215.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: pfo:Pfl01_1053 CheW protein YP_003137216.1 KEGG: pca:Pcar_0250 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_003137217.1 PFAM: NUDIX hydrolase; KEGG: ppr:PBPRB0986 MutT/NUDIX family protein YP_003137218.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: mfa:Mfla_0591 deoxyribodipyrimidine photo-lyase type I YP_003137219.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_003137220.1 PFAM: extracellular solute-binding protein family 1; KEGG: reh:H16_A0759 ABC-type transporter periplasmic component: FeT family YP_003137221.1 PFAM: extracellular solute-binding protein family 1; KEGG: cti:RALTA_A0747 iron(III)-binding periplasmic protein precursor YP_003137222.1 PFAM: carbohydrate-selective porin OprB; S-layer domain protein; KEGG: hypothetical protein YP_003137223.1 PFAM: FeoA family protein; KEGG: rsq:Rsph17025_3854 Fe2+ transport system protein B-like protein YP_003137224.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: xau:Xaut_3971 multicopper oxidase type 3 YP_003137225.1 KEGG: ilo:IL0760 hypothetical protein YP_003137226.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: sde:Sde_3956 zinc-containing alcohol dehydrogenase family protein YP_003137227.1 KEGG: mxa:MXAN_5370 lipoprotein YP_003137228.1 KEGG: scl:sce7388 hypothetical protein YP_003137229.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_003137230.1 PFAM: protein of unknown function DUF502; KEGG: dde:Dde_1497 hypothetical protein YP_003137231.1 KEGG: shw:Sputw3181_2661 methyl-accepting chemotaxis sensory transducer YP_003137232.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: gme:Gmet_2618 6-phosphogluconolactonase YP_003137233.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce2516 FHA domain-containing protein YP_003137234.1 PFAM: peptidase M50; CBS domain containing protein; KEGG: noc:Noc_1011 peptidase M50 YP_003137235.1 PFAM: short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: bxe:Bxe_B2697 short-chain type dehydrogenase/reductase YP_003137236.1 KEGG: eba:ebA672 hypothetical protein YP_003137237.1 KEGG: bxe:Bxe_A4241 hypothetical protein YP_003137240.1 PFAM: protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pst:PSPTO_4250 DNA-binding protein YP_003137242.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: bba:Bd1158 chromosome segregation SMC protein YP_003137243.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: sfu:Sfum_3163 extracellular solute-binding protein, family 3 YP_003137244.1 KEGG: GH18272 gene product from transcript GH18272-RA YP_003137245.1 PFAM: radical SAM protein; KEGG: msl:Msil_2595 radical SAM protein YP_003137246.1 PFAM: protein of unknown function UPF0150; KEGG: bac:BamMC406_6579 hypothetical protein YP_003137247.1 PFAM: inositol monophosphatase; KEGG: hypothetical protein YP_003137248.1 PFAM: stress responsive alpha-beta barrel domain protein; KEGG: hypothetical protein YP_003137249.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: gbm:Gbem_0236 histidinol-phosphate aminotransferase YP_003137250.1 PFAM: NACHT nucleoside triphosphatase; KEGG: dat:HRM2_34080 hypothetical protein YP_003137251.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; response regulator receiver; KEGG: lch:Lcho_4113 multi-sensor hybrid histidine kinase YP_003137252.1 PFAM: response regulator receiver; GAF domain protein; SMART: response regulator receiver; GAF domain protein; KEGG: noc:Noc_1271 hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase YP_003137253.1 KEGG: dvl:Dvul_1685 hypothetical protein YP_003137254.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_003137255.1 KEGG: gsu:GSU2996 precorrin-6y c5,15-methyltransferase; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003137256.1 PFAM: permease; KEGG: dal:Dalk_1552 permease YP_003137258.1 KEGG: pzu:PHZ_c0403 hypothetical protein YP_003137259.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: pol:Bpro_3898 multi-sensor signal transduction histidine kinase YP_003137260.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; KEGG: rpe:RPE_0632 multi-sensor signal transduction histidine kinase YP_003137261.1 PFAM: PAP fibrillin family protein; KEGG: hypothetical protein YP_003137262.1 PFAM: glycosyl transferase group 1; KEGG: probabale LPS (Lipopolysaccharide) glycosyltransferase YP_003137263.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate YP_003137264.1 KEGG: hypothetical protein YP_003137265.1 KEGG: CPLD38; hypothetical protein YP_003137266.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_003137267.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: PRX1; 2-cys peroxiredoxin, chloroplastic; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) YP_003137268.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: gur:Gura_1415 Holliday junction resolvase YP_003137270.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: scl:sce2312 two-component hybrid sensor and regulator YP_003137271.1 PFAM: mannose-6-phosphate isomerase type II; Cupin 2 conserved barrel domain protein; KEGG: geo:Geob_1872 mannose-6-phosphate isomerase YP_003137272.1 catalyzes branch migration in Holliday junction intermediates YP_003137273.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: hypothetical protein YP_003137274.1 TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase KEGG: sat:SYN_00910 adenine-specific methyltransferase YP_003137275.1 PFAM: protein of unknown function DUF820; KEGG: mxa:MXAN_1198 hypothetical protein YP_003137276.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_003137277.1 PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: spe:Spro_2993 pyrrolidone-carboxylate peptidase YP_003137279.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone YP_003137280.1 PFAM: protein of unknown function DUF29; KEGG: mpo:Mpop_2482 protein of unknown function DUF29 YP_003137281.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: dal:Dalk_0426 lipopolysaccharide biosynthesis protein YP_003137282.1 PFAM: polysaccharide export protein; KEGG: spl:Spea_1395 polysaccharide export protein YP_003137283.1 PFAM: Na+/Picotransporter; KEGG: vcj:VCD_003645 sodium-dependent phosphate transporter YP_003137284.1 KEGG: hypothetical protein YP_003137285.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; rubrerythrin; KEGG: tgr:Tgr7_0679 rubrerythrin YP_003137286.1 PFAM: YcfA family protein; KEGG: noc:Noc_0412 hypothetical protein YP_003137287.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_0168 hypothetical protein YP_003137288.1 KEGG: scl:sce7545 hypothetical protein YP_003137289.1 KEGG: cbg:CbuG_1666 hypothetical cytosolic protein YP_003137290.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; transferase hexapeptide repeat containing protein; KEGG: gsu:GSU2266 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase YP_003137291.1 KEGG: similar to 5-amp-activated protein kinase, beta subunit YP_003137292.1 KEGG: csa:Csal_0886 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; Cold shock protein YP_003137294.1 TIGRFAM: isochorismate synthase; PFAM: chorismate binding-like; KEGG: psp:PSPPH_2904 salicylate biosynthesis isochorismate synthase YP_003137295.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate YP_003137296.1 PFAM: ferredoxin thioredoxin reductase beta chain; KEGG: Os09g0249900; hypothetical protein YP_003137297.1 PFAM: protein of unknown function DUF309; KEGG: geo:Geob_1322 protein of unknown function DUF309 YP_003137298.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: dde:Dde_1175 RNA-binding region RNP-1 YP_003137302.1 PFAM: aldehyde dehydrogenase; KEGG: aldh2b; aldehyde dehydrogenase 2b; K00128 aldehyde dehydrogenase (NAD+) YP_003137303.1 PFAM: Rieske [2Fe-2S] domain protein; Pheophorbide a oxygenase; KEGG: hypothetical protein YP_003137304.1 PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD-binding; oxidoreductase domain; KEGG: bra:BRADO5189 NAD(P)-dependent oxidoreductase YP_003137305.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_003137306.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_003137307.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003137308.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_003137309.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_003137310.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: avn:Avin_01610 nitrogen fixation Fe-S cluster assembly protein IscAnif YP_003137311.1 PFAM: transposase IS4 family protein; KEGG: hypothetical protein LOC100198068 YP_003137312.1 KEGG: cjd:JJD26997_1909 prophage ps3 protein 01 YP_003137316.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP YP_003137317.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_003137318.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the subunit beta on the DNA YP_003137320.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: hypothetical protein; K06641 serine/threonine-protein kinase Chk2 YP_003137321.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ent:Ent638_2697 glyoxalase/bleomycin resistance protein/dioxygenase YP_003137322.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: hypothetical protein YP_003137323.1 KEGG: bbt:BBta_3910 hypothetical protein YP_003137324.1 PFAM: peptidase M23; KEGG: mpt:Mpe_A3151 hypothetical protein YP_003137325.1 KEGG: sat:SYN_00927 hypothetical protein YP_003137326.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: ppd:Ppro_2070 pseudouridine synthase YP_003137328.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_003137329.1 KEGG: gur:Gura_1489 hypothetical protein YP_003137330.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: glo:Glov_2533 hypotheticalprotein YP_003137331.1 KEGG: hypothetical protein YP_003137332.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; hypothetical protein; KEGG: TPR Domain containing protein YP_003137333.1 PFAM: beta-lactamase domain protein; KEGG: mxa:MXAN_0179 metallo-beta-lactamase family protein YP_003137334.1 PFAM: protein of unknown function DUF1555; KEGG: gur:Gura_1816 Ig family protein YP_003137336.1 KEGG: gsu:GSU1846 glycosyl transferase domain-containing protein; TIGRFAM: anti-anti-sigma factor; PFAM: sugar transferase; sulfate transporter/antisigma-factor antagonist STAS YP_003137337.1 KEGG: sfu:Sfum_4032 anti-sigma regulatory factor, serine/threonine protein kinase YP_003137339.1 PFAM: protein of unknown function DUF721; KEGG: dps:DP0932 hypothetical protein YP_003137340.1 KEGG: rcm:A1E_01860 actin polymerization protein RickA YP_003137341.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: hypothetical protein; K07007 YP_003137342.1 PFAM: transposase IS200-family protein; KEGG: pmr:PMI1001 IS element transposase YP_003137343.1 PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: eba:p1B202 transposase YP_003137344.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: HAD-superfamily hydrolase subfamily IB hypothetical 1; haloacid dehalogenase; KEGG: dal:Dalk_2418 HAD-superfamily hydrolase, subfamily IB (PSPase-like) YP_003137346.1 TIGRFAM: methylthioribulose-1-phosphate dehydratase; PFAM: class II aldolase/adducin family protein; KEGG: afr:AFE_0436 aldolase, class II YP_003137347.1 PFAM: inner-membrane translocator; KEGG: csa:Csal_1420 inner-membrane translocator YP_003137348.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: DRR2; diatom response regulator 2 YP_003137349.1 KEGG: cbg:CbuG_1409 ferredoxin, 2Fe-2s YP_003137350.1 PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: mpo:Mpop_1672 diacylglycerol kinase catalytic region YP_003137351.1 PFAM: PP-loop domain protein; ExsB family protein; KEGG: mxa:MXAN_4063 hypothetical protein YP_003137352.1 KEGG: mca:MCA1149 hypothetical protein YP_003137354.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: dol:Dole_3270 histidine kinase YP_003137355.1 KEGG: mxa:MXAN_5780 efflux ABC transporter permease protein PilI YP_003137356.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_003137357.1 KEGG: hypothetical protein; K03797 carboxyl-terminal processing protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003137358.1 PFAM: NUDIX hydrolase; KEGG: rle:RL2925 mutator MutT protein YP_003137359.1 PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: GK10897 gene product from transcript GK10897-RA YP_003137360.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_003137361.1 catalyzes the transfer of electrons from NADH to ubiquinone; NdhD4 is possibly involved in a constitutive CO(2)-uptake system YP_003137362.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_003137363.1 PFAM: microcompartments protein; KEGG: tau:Tola_1684 microcompartments protein YP_003137364.1 PFAM: microcompartments protein; KEGG: shw:Sputw3181_0429 microcompartment protein YP_003137365.1 PFAM: ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: tau:Tola_1695 ethanolamine utilization protein EutN/carboxysome structural protein CcmL YP_003137366.1 PFAM: ribulose bisphosphate carboxylase small chain; transferase hexapeptide repeat containing protein; KEGG: pca:Pcar_1842 carbonic anhydrase YP_003137367.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: swp:swp_2172 hypothetical protein YP_003137368.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7446 hypothetical protein YP_003137369.1 type III RuBisCO; involved in carbon fixation YP_003137370.1 PFAM: chaperonin family protein RbcX; KEGG: hypothetical protein YP_003137371.1 PFAM: ribulose bisphosphate carboxylase small chain; KEGG: hypothetical protein YP_003137372.1 PFAM: protein of unknown function DUF1555; KEGG: similar to Y51B11A.1 YP_003137373.1 PFAM: PilT protein domain protein; KEGG: hip:CGSHiEE_01420 nucleic acid-binding protein YP_003137374.1 KEGG: hypothetical protein YP_003137375.1 PFAM: beta-lactamase; KEGG: vvu:VV1_0001 beta-lactamase class A YP_003137376.1 KEGG: net:Neut_0212 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein YP_003137377.1 PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: scl:sce4467 type IV pilus biogenesis protein PilB YP_003137378.1 KEGG: geo:Geob_3373 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA YP_003137379.1 PFAM: type II secretion system protein; KEGG: pca:Pcar_2147 general protein secretion protein YP_003137381.1 PFAM: protein of unknown function DUF362; KEGG: gsu:GSU0494 iron-sulfur cluster-binding protein YP_003137382.1 KEGG: pfo:Pfl01_0156 hypothetical protein YP_003137383.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ppg:PputGB1_4630 short-chain dehydrogenase/reductase SDR YP_003137385.1 KEGG: sat:SYN_02904 AmpG protein YP_003137386.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_003137387.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003137388.1 KEGG: hypothetical protein, conserved YP_003137389.1 PFAM: membrane protein of uknown function UCP014873; KEGG: sme:SMa1672 hypothetical protein YP_003137390.1 PFAM: fatty acid desaturase; KEGG: beta-carotene hydroxylase; K02294 beta-carotene hydroxylase YP_003137391.1 KEGG: hypothetical protein YP_003137392.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_003137394.1 PFAM: ferredoxin; KEGG: ferredoxin YP_003137395.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: glo:Glov_3679 cobyric acid synthase CobQ YP_003137398.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: cbs:COXBURSA331_A0978 anti-oxidant AhpCTSA family protein YP_003137399.1 KEGG: ank:AnaeK_0529 hypothetical protein YP_003137401.1 KEGG: pzu:PHZ_p0176 hypothetical protein YP_003137402.1 PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: glo:Glov_0793 GHMP kinase YP_003137403.1 PFAM: nucleotidyl transferase; KEGG: ypb:YPTS_1057 nucleotidyl transferase YP_003137404.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_003137406.1 PFAM: ABC transporter; Forkhead-associated protein; ABC transporter; SMART: ATPase AAA; Forkhead-associated protein; KEGG: scl:sce2512 hypothetical protein YP_003137407.1 hemoprotein; NADPH dependent; with the subunit alpha (a flavoprotein) catalyzes the reduction of sulfite to sulfide YP_003137408.1 KEGG: rfr:Rfer_0944 hypothetical protein YP_003137409.1 KEGG: dal:Dalk_0047 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein YP_003137410.1 PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: hypothetical protein YP_003137411.1 PFAM: photosystem II protein PsbN; KEGG: psbN, OrsajCp055; photosystem II protein N; K02715 PsbN protein YP_003137412.1 may be involved in regulating PSII assembly and/or stability YP_003137413.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_003137414.1 PFAM: heat shock protein DnaJ KEGG: hypothetical protein YP_003137415.1 PFAM: protein of unknown function UPF0027; zinc finger C2H2-type domain protein; SMART: Hedgehog/intein hint domain protein; KEGG: bba:Bd2854 cytoplasmic protein YP_003137416.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bba:Bd3294 oxidase-related protein YP_003137417.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_003137418.1 PFAM: YcfA family protein; KEGG: hpa:HPAG1_0203 hypothetical protein YP_003137419.1 PFAM: protein of unknown function UPF0150; KEGG: hpa:HPAG1_0204 hypothetical protein YP_003137420.1 PFAM: protein of unknown function DUF820; KEGG: mpo:Mpop_5185 protein of unknown function DUF820 YP_003137421.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_003137422.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_003137423.1 PFAM: protein of unknown function DUF167; KEGG: hypothetical protein; K09131 hypothetical protein YP_003137425.1 PFAM: ribonuclease II; KEGG: hypothetical protein YP_003137426.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_003137427.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_003137429.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: amc:MADE_01614 xenobiotic reductase B YP_003137432.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mca:MCA1587 phosphoketolase YP_003137434.1 KEGG: noc:Noc_2065 lipolytic protein YP_003137435.1 KEGG: aha:AHA_3618 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003137436.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_003137437.1 PFAM: protein of unknown function DUF938; KEGG: bph:Bphy_4714 hypothetical protein YP_003137439.1 PFAM: endonuclease/exonuclease/phosphatase; Hemolysin-type calcium-binding region; KEGG: pap:PSPA7_1201 PKD domain-containing protein YP_003137440.1 PFAM: helix-turn-helix HxlR type; KEGG: abu:Abu_0028 hypothetical protein YP_003137441.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: azo:azo2427 hypothetical protein YP_003137442.1 KEGG: sil:SPO0462 antibiotic biosynthesis monooxygenase domain-containing protein YP_003137443.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_003137445.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: mex:Mext_4811 PucC protein YP_003137446.1 amylomaltase; acts to release glucose from maltodextrins YP_003137447.1 KEGG: hypothetical protein YP_003137448.1 KEGG: ank:AnaeK_4122 phosphate binding protein YP_003137450.1 PFAM: alanine racemase domain protein; KEGG: ilo:IL1974 TIM-barrel fold family protein YP_003137451.1 PFAM: protein of unknown function DUF552 YP_003137452.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_003137453.1 KEGG: sme:SMa1990 hypothetical protein YP_003137454.1 KEGG: rlt:Rleg2_5180 hypothetical protein YP_003137455.1 KEGG: rhi:NGR_c01370 hypothetical protein YP_003137457.1 KEGG: dal:Dalk_4292 transcription regulator with HTH domain YP_003137458.1 PFAM: cytochrome P450; KEGG: scl:sce6424 cytochrome P450 CYP110J1 YP_003137459.1 TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: glo:Glov_3453 sugar fermentation stimulation protein YP_003137460.1 KEGG: tmz:Tmz1t_0517 hypothetical protein YP_003137461.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase; KEGG: noc:Noc_2960 tRNA-dihydrouridine synthase A YP_003137462.1 PFAM: alpha/beta hydrolase fold protein; KEGG: hydrolase, alpha/beta fold family protein YP_003137464.1 PFAM: protein of unknown function DUF955; KEGG: pol:Bpro_0956 hypothetical protein YP_003137465.1 KEGG: ppu:PP_5401 hypothetical protein YP_003137466.1 PFAM: Domain of unknown function DUF1817; KEGG: hypothetical protein YP_003137467.1 PFAM: polysaccharide pyruvyl transferase; KEGG: bvi:Bcep1808_0811 polysaccharide pyruvyl transferase YP_003137468.1 PFAM: sodium/hydrogen exchanger; UspA domain protein; KEGG: lhk:LHK_02018 KefB YP_003137469.1 KEGG: ppd:Ppro_2370 Ig family protein YP_003137472.1 KEGG: shl:Shal_1141 methylation site containing protein YP_003137473.1 KEGG: ypi:YpsIP31758_3429 rhs element Vgr protein YP_003137474.1 KEGG: dat:HRM2_32220 diguanylate cyclase (GGDEF) domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein YP_003137475.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sfu:Sfum_3017 response regulator receiver protein YP_003137476.1 KEGG: pol:Bpro_4149 periplasmic sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein YP_003137477.1 PFAM: Hemolysin-type calcium-binding region; KEGG: rpb:RPB_0803 5'-nucleotidase YP_003137478.1 KEGG: GF16644 gene product from transcript GF16644-RA YP_003137479.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: acp:A2cp1_0313 ATPase AAA YP_003137482.1 KEGG: ppf:Pput_2585 hypothetical protein YP_003137483.1 PFAM: PAP fibrillin family protein; KEGG: hypothetical protein YP_003137484.1 catalyzes the reduction of biliverdin IX-alpha producing (3Z)-phycocyanobilin and oxidized ferredoxin YP_003137485.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: hypothetical protein YP_003137487.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce5208 hypothetical protein YP_003137488.1 KEGG: hypothetical protein, conserved YP_003137489.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: hypothetical protein YP_003137490.1 PFAM: protein of unknown function DUF37; KEGG: tmz:Tmz1t_2332 protein of unknown function DUF37 YP_003137492.1 KEGG: GL11413 gene product from transcript GL11413-RA YP_003137493.1 PFAM: protein of unknown function UPF0060; KEGG: hypothetical protein YP_003137494.1 PFAM: ferrochelatase; KEGG: geo:Geob_1076 ferrochelatase YP_003137496.1 PFAM: glycosyl transferase family 2; TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: sat:SYN_02803 glycosyltransferase YP_003137497.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_003137498.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_003137499.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_003137500.1 binds directly to 23S ribosomal RNA YP_003137501.1 Modulates Rho-dependent transcription termination YP_003137502.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: aeh:Mlg_0445 preprotein translocase subunit SecE YP_003137503.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_003137505.1 PFAM: protein of unknown function UPF0175 YP_003137508.1 PFAM: NB-ARC domain protein; TPR repeat-containing protein; hypothetical protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: noc:Noc_0166 hypotheticalprotein YP_003137511.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_003137512.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_003137513.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_003137514.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: tgr:Tgr7_1826 TatD-related deoxyribonuclease YP_003137515.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_003137516.1 KEGG: pna:Pnap_4740 transposase YP_003137517.1 KEGG: nis:NIS_0217 hypothetical protein YP_003137518.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: avn:Avin_14020 ABC transporter ATP binding component YP_003137519.1 KEGG: rpd:RPD_3572 hypothetical protein YP_003137521.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: vha:VIBHAR_05108 ATP-binding ABC transporter YP_003137522.1 PFAM: cobalt transport protein; KEGG: vsp:VS_II0187 ABC transporter: transmembrane protein YP_003137523.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003137524.1 KEGG: hch:HCH_05847 gamma-glutamyl phosphate reductase YP_003137527.1 PFAM: alpha/beta hydrolase fold protein; KEGG: predicted protein YP_003137529.1 KEGG: hypothetical protein YP_003137530.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gur:Gura_4381 phosphoglucomutase YP_003137531.1 KEGG: pca:Pcar_2768 molybdopterin biosynthesis, protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; radical SAM protein; SMART: Elongator protein 3/MiaB/NifB YP_003137532.1 KEGG: gsu:GSU0165 hypothetical protein YP_003137534.1 TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase; KEGG: msl:Msil_1764 nitrogenase-associated protein YP_003137535.1 KEGG: sfu:Sfum_2704 NADH dehydrogenase (quinone) YP_003137536.1 TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: mca:MCA0213 hypothetical protein YP_003137537.1 PFAM: NifZ family protein; KEGG: bja:blr1761 iron-sulfur cofactor synthesis protein YP_003137538.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis YP_003137541.1 TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; KEGG: gur:Gura_1495 serine O-acetyltransferase YP_003137542.1 TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM protein; KEGG: bbt:BBta_5904 nitrogenase FeMo cofactor biosynthesis protein NifB YP_003137544.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: nis:NIS_0409 4Fe-4S ferredoxin YP_003137545.1 KEGG: gbm:Gbem_1569 cysteine desulfurase NifS; TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003137546.1 TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: gbm:Gbem_1568 Fe-S cluster assembly protein NifU YP_003137547.1 KEGG: mno:Mnod_3996 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_003137548.1 TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; KEGG: mca:MCA0230 nitrogenase molybdenum-iron protein alpha chain YP_003137549.1 KEGG: mca:MCA0231 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_003137550.1 TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; KEGG: bvi:Bcep1808_6020 nitrogenase MoFe cofactor biosynthesis protein NifE YP_003137551.1 functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe YP_003137552.1 TIGRFAM: nitrogen fixation protein NifX; PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: bbt:BBta_5920 nitrogenase molybdenum-iron protein NifX YP_003137553.1 TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: rpd:RPD_1079 hypothetical protein YP_003137554.1 PFAM: protein of unknown function DUF683; KEGG: mca:MCA0237 hypothetical protein YP_003137555.1 associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage YP_003137556.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: avn:Avin_02710 molybdopterin biosynthesis protein YP_003137557.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: ank:AnaeK_3562 iron-sulfur cluster assembly accessory protein YP_003137558.1 TIGRFAM: ferredoxin [2Fe-2S]; PFAM: ferredoxin; KEGG: ferredoxin YP_003137561.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: geo:Geob_2253 ferrous iron transport protein B YP_003137562.1 PFAM: nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: gme:Gmet_2444 ferrous iron transport protein B YP_003137563.1 PFAM: FeoA family protein; KEGG: ppd:Ppro_3680 DtxR family iron dependent repressor YP_003137564.1 TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afr:AFE_1512 ferredoxin YP_003137565.1 CCB4; KEGG: CCB4; CGLD23 protein required for cyt b6 assembly YP_003137566.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; KEGG: pmr:PMI0860 malonyl CoA-acyl carrier protein transacylase YP_003137567.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; chalcone and stilbene synthase domain protein; KEGG: hypothetical protein; K00648 3-oxoacyl-(acyl-carrier-protein) synthase III YP_003137568.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_003137569.1 PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: bba:Bd0816 D-alanyl-D-alanine carboxypeptidase YP_003137570.1 PFAM: protein of unknown function DUF450 YP_003137571.1 KEGG: aeh:Mlg_2693 hypothetical protein YP_003137572.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: DRR1; diatom response regulator 1 YP_003137573.1 PFAM: protein of unknown function DUF1232; KEGG: pol:Bpro_2926 hypothetical protein YP_003137574.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: Os04g0668800; hypothetical protein YP_003137575.1 PFAM: protein of unknown function DUF29; KEGG: plu:plu4118 hypothetical protein YP_003137579.1 KEGG: mca:MCA3007 hypothetical protein YP_003137580.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_003137583.1 KEGG: bra:BRADO2238 hypothetical protein YP_003137584.1 KEGG: pfo:Pfl01_1621 hypothetical protein YP_003137585.1 KEGG: kpe:KPK_5384 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_003137586.1 PFAM: protein of unknown function DUF928 YP_003137587.1 KEGG: pla:Plav_0680 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: CHASE2 domain protein; EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003137588.1 KEGG: dal:Dalk_2331 hypothetical protein YP_003137589.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: ara:Arad_1091 phosphoglycolate phosphatase protein YP_003137590.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_003137592.1 PFAM: MbtH domain protein; KEGG: mxa:MXAN_3118 MbtH-like domain-containing protein YP_003137593.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: avn:Avin_25570 non-ribosomal peptide synthase, PvdD/PvdJ-like protein YP_003137594.1 KEGG: sun:SUN_0277 efflux system, membrane fusion protein YP_003137595.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: TPR Domain containing protein YP_003137596.1 KEGG: pca:Pcar_1828 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase YP_003137597.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; sulfotransferase; Thioesterase; phosphopantetheine-binding; KEGG: scl:sce8262 non-ribosomal peptide synthetase YP_003137598.1 PFAM: ferric-uptake regulator; KEGG: dal:Dalk_2365 ferric uptake regulator, Fur family YP_003137599.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: par:Psyc_0602 nitrate/nitrite response regulator YP_003137600.1 KEGG: VAR2; VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding; K03798 cell division protease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003137601.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: geo:Geob_3040 anti-sigma-factor antagonist YP_003137602.1 PFAM: response regulator receiver; stage II sporulation E family protein; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: dal:Dalk_3497 PAS/PAC sensor protein YP_003137603.1 KEGG: glo:Glov_2102 anti-sigma regulatory factor, serine/threonine protein kinase YP_003137604.1 PFAM: rhodanese domainprotein; SMART: Rhodanese domain protein; KEGG: cja:CJA_1940 thiosulfate sulfurtransferase YP_003137605.1 PFAM: protein of unknown function DUF88; KEGG: pla:Plav_2865 hypothetical protein YP_003137606.1 PFAM: nitrogen regulatory protein P-II; KEGG: slo:Shew_1110 nitrogen regulatory protein P-II YP_003137607.1 PFAM: thioesterase superfamily protein; KEGG: scl:sce3016 hypothetical protein YP_003137608.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003137609.1 PFAM: DNA polymerase beta domain protein region; KEGG: hha:Hhal_0686 DNA polymerase subunit beta YP_003137610.1 PFAM: protein of unknown function DUF86; TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: glo:Glov_3038 protein of unknown function DUF86 YP_003137611.1 PFAM: DNA polymerase beta domain protein region; KEGG: gme:Gmet_0479 DNA polymerase, beta-like region YP_003137612.1 PFAM: protein of unknown function DUF86; KEGG: gme:Gmet_0480 hypothetical protein YP_003137613.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein YP_003137614.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_003137615.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_1501 transposase YP_003137616.1 PFAM: protein of unknown function DUF820 YP_003137617.1 PFAM: microcompartments protein; KEGG: yen:YE2735 propanediol utilization protein YP_003137618.1 PFAM: microcompartments protein; KEGG: rpc:RPC_1168 microcompartments protein YP_003137619.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: cak:Caul_4919 NAD-dependent epimerase/dehydratase YP_003137620.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: apl:APL_1464 ABC transporter integral membrane subunit YP_003137621.1 PFAM: ABC transporter; KEGG: noc:Noc_1227 ABC-type polysaccharide/polyol phosphate export systems permease component YP_003137623.1 KEGG: hypothetical protein YP_003137624.1 TIGRFAM: chlorophyll synthase, ChlG; bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: hypothetical protein; K04040 chlorophyll synthase YP_003137626.1 PFAM: protein of unknown function DUF820; KEGG: ppd:Ppro_3209 hypothetical protein YP_003137627.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_003137628.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_003137629.1 KEGG: noc:Noc_0525 hypothetical protein YP_003137636.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_003137637.1 KEGG: ppu:PP_0640 hypothetical protein YP_003137638.1 KEGG: ppu:PP_0639 hypothetical protein YP_003137639.1 PFAM: protein of unknown function DUF433; KEGG: lch:Lcho_4191 hypothetical protein YP_003137640.1 PFAM: protein of unknown function DUF433; KEGG: lch:Lcho_4191 hypothetical protein YP_003137641.1 KEGG: tgr:Tgr7_2091 hypothetical protein YP_003137642.1 PFAM: XisI protein YP_003137643.1 PFAM: membrane protein of uknown function UCP014873; KEGG: lip:LI0059 hypothetical protein YP_003137644.1 PFAM: Auxin Efflux Carrier; KEGG: tau:Tola_2495 auxin efflux carrier YP_003137645.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003137646.1 PFAM: cytochrome P450; KEGG: nmu:Nmul_A2167 cytochrome P450 YP_003137647.1 KEGG: hypothetical protein YP_003137648.1 PFAM: protein of unknown function DUF1257; KEGG: hypothetical protein YP_003137649.1 KEGG: hypothetical protein YP_003137650.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003137651.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: avi:Avi_3928 ABC transporter membrane spanning protein (oligopeptide) YP_003137652.1 KEGG: hypothetical protein YP_003137653.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_003137654.1 KEGG: sfu:Sfum_0358 N-acyl-D-glucosamine 2-epimerase YP_003137655.1 PFAM: ThiJ/PfpI domain protein; KEGG: sfu:Sfum_0357 ThiJ/PfpI domain protein YP_003137656.1 PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sfu:Sfum_1851 thiamine pyrophosphate enzyme domain protein TPP-binding YP_003137657.1 KEGG: swd:Swoo_0391 hypothetical protein YP_003137659.1 PFAM: protein of unknown function DUF751; KEGG: hypothetical protein YP_003137660.1 PFAM: protein of unknown function DUF187; KEGG: hypothetical protein YP_003137661.1 PFAM: transposase family protein; KEGG: noc:Noc_1615 transposase YP_003137663.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dat:HRM2_13790 hypothetical protein YP_003137665.1 KEGG: bpy:Bphyt_4379 PilT protein domain protein YP_003137666.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate YP_003137667.1 PFAM: pentapeptide repeat protein; KEGG: mms:mma_2224 pentapeptide repeat-containing protein YP_003137668.1 KEGG: binding / catalytic/ coenzyme binding YP_003137671.1 KEGG: met:M446_6778 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Forkhead-associated protein; SMART: Forkhead-associated protein YP_003137673.1 KEGG: neu:NE0906 cell division protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003137674.1 PFAM: phospholipase/carboxylesterase; KEGG: lpc:LPC_1983 hypothetical protein YP_003137675.1 PFAM: phosphoribosyltransferase; KEGG: mxa:MXAN_4250 phosphoribosyl transferase domain-containing protein YP_003137678.1 PFAM: endoribonuclease L-PSP; KEGG: nmu:Nmul_A2263 endoribonuclease L-PSP YP_003137679.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: noc:Noc_0378 5-oxoprolinase (ATP-hydrolyzing) YP_003137680.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rpi:Rpic_4675 two component transcriptional regulator, LuxR family YP_003137681.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: afw:Anae109_2452 histidine kinase YP_003137682.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_003137683.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_003137684.1 PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: hac:Hac_1550 ISHa1675 transposase B YP_003137685.1 TIGRFAM: K+-transporting ATPase, F subunit YP_003137686.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex YP_003137687.1 KEGG: sil:SPO3881 twin-arginine translocation pathway signal sequence domain-containing protein YP_003137688.1 PFAM: alpha/beta hydrolase fold protein; KEGG: mxa:MXAN_6097 alpha/beta fold family hydrolase YP_003137689.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_1846 two component transcriptional regulator, winged helix family YP_003137690.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_003137692.1 PFAM: protein of unknown function DUF565; KEGG: hypothetical protein YP_003137693.1 KEGG: hypothetical protein YP_003137695.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_003137696.1 KEGG: eca:ECA3840 hypothetical protein YP_003137697.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: vfm:VFMJ11_2152 neopullulanase YP_003137698.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003137699.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_003137700.1 PFAM: sporulation domain protein; KEGG: lpp:lpp2903 hypothetical protein YP_003137701.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_003137702.1 KEGG: she:Shewmr4_3593 hypothetical protein YP_003137703.1 PFAM: pentapeptide repeat protein; KEGG: scl:sce0105 hypothetical protein YP_003137704.1 KEGG: mxa:MXAN_2061 HAMP domain/HD domain-containing protein YP_003137705.1 PFAM: amidohydrolase; amidohydrolase; KEGG: ara:Arad_3529 cytosine deaminase protein YP_003137706.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ank:AnaeK_2951 protein of unknown function DUF224 cysteine-rich region domain protein YP_003137707.1 PFAM: FAD linked oxidase; KEGG: acp:A2cp1_3046 FAD linked oxidase YP_003137708.1 KEGG: mxa:MXAN_3546 KH domain-containing protein YP_003137709.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_003137710.1 PFAM: protein of unknown function DUF218; KEGG: hap:HAPS_2205 hypothetical protein YP_003137713.1 TIGRFAM: photosystem II D2 protein (photosystem q(a) protein); PFAM: photosynthetic reaction centre protein; KEGG: photosystem II D2 protein; K02706 photosystem II PsbD protein YP_003137714.1 KEGG: scl:sce2357 hypothetical protein YP_003137715.1 PFAM: FAD dependent oxidoreductase; KEGG: dat:HRM2_38480 FAD dependent oxidoreductase YP_003137716.1 PFAM: protein of unknown function DUF1963; KEGG: hypothetical protein YP_003137717.1 KEGG: dar:Daro_4059 hypothetical protein YP_003137718.1 KEGG: bra:BRADO7131 hypothetical protein YP_003137719.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_3038 secretion protein HlyD YP_003137720.1 PFAM: protein of unknown function DUF214; KEGG: ppd:Ppro_3235 hypothetical protein YP_003137721.1 KEGG: ppw:PputW619_3822 hypothetical protein YP_003137722.1 PFAM: protein of unknown function DUF497; KEGG: bpy:Bphyt_3748 protein of unknown function DUF497 YP_003137723.1 PFAM: polynucleotide adenylyltransferase region; KEGG: gur:Gura_3120 polynucleotide adenylyltransferase region YP_003137724.1 KEGG: hypothetical protein YP_003137725.1 KEGG: mmw:Mmwyl1_2489 DNA-binding protein YP_003137726.1 KEGG: dvm:DvMF_2354 ATPase AAA YP_003137727.1 PFAM: Mo-dependent nitrogenase family protein YP_003137728.1 KEGG: shn:Shewana3_2920 hypothetical protein YP_003137730.1 PFAM: protein of unknown function DUF1555; protein of unknown function DUF839; KEGG: mno:Mnod_0281 protein of unknown function DUF839 YP_003137732.1 PFAM: Lanthionine synthetase C family protein; KEGG: mxa:MXAN_2857 lantibiotic modification protein YP_003137733.1 KEGG: sit:TM1040_3291 hypothetical protein YP_003137734.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sit:TM1040_3290 GCN5-related N-acetyltransferase YP_003137735.1 PFAM: Tail Collar domain protein; KEGG: mxa:MXAN_0326 phage tail collar domain-containing protein YP_003137736.1 KEGG: hypothetical protein; PFAM: alkaline phosphatase; protein of unknown function DUF1555; SMART: alkaline phosphatase YP_003137737.1 KEGG: lch:Lcho_1594 hypothetical protein YP_003137739.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_003137740.1 PFAM: peptidase M22 glycoprotease; KEGG: csa:Csal_0858 peptidase M22, glycoprotease YP_003137741.1 PFAM: protein of unknown function DUF29; KEGG: mno:Mnod_0010 protein of unknown function DUF29 YP_003137742.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: btr:Btr_2603 phage-related modification methylase YP_003137744.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: tmz:Tmz1t_0564 protein of unknown function DUF6 transmembrane YP_003137746.1 PFAM: protein of unknown function DUF323; KEGG: dps:DP2315 hypothetical protein YP_003137748.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: gur:Gura_1707 DNA repair protein RecN YP_003137750.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_003137751.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: tcx:Tcr_1242 HAD family hydrolase YP_003137752.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: similar to mRNA binding protein CSP41 precursor YP_003137753.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: dar:Daro_4042 ExsB YP_003137754.1 KEGG: gsu:GSU3327 hypothetical protein YP_003137755.1 KEGG: vesicular transport-associated repeat protein YP_003137757.1 PFAM: NUDIX hydrolase; KEGG: msl:Msil_0220 NUDIX hydrolase YP_003137758.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_003137760.1 PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mll4149 sugar ABC transporter (sugar-binding protein) YP_003137761.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_2988 small-conductance mechanosensitive channel YP_003137762.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: pmr:PMI1485 hypothetical protein YP_003137764.1 PFAM: cytochrome c class I; KEGG: PetJ; cytochrome c6, cytochrome c553 YP_003137765.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: stage II sporulation D domain protein; KEGG: dol:Dole_0035 SpoIID/LytB domain-containing protein YP_003137766.1 KEGG: predicted protein YP_003137767.1 TIGRFAM: photosystem q(b) protein; PFAM: photosynthetic reaction centre protein; KEGG: psbA; PSII D1-protein; K02703 photosystem II PsbA protein YP_003137768.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4237 hypothetical protein YP_003137770.1 PFAM: Spermine synthase; KEGG: spermine synthase; K00797 spermidine synthase YP_003137772.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_003137773.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003137774.1 PFAM: manganese and iron superoxide dismutase; KEGG: xca:xccb100_1900 superoxidase dismutase YP_003137775.1 PFAM: membrane protein of unknown function; KEGG: bpt:Bpet4762 hypothetical protein YP_003137776.1 PFAM: type III restriction protein res subunit; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: gur:Gura_2481 type III restriction enzyme, res subunit YP_003137777.1 PFAM: protein of unknown function DUF820; KEGG: hha:Hhal_1924 hypothetical protein YP_003137778.1 PFAM: protein of unknown function DUF28; KEGG: geo:Geob_2326 protein of unknown function DUF28 YP_003137779.1 TIGRFAM: sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: glo:Glov_2234 sugar epimerase YP_003137780.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: mlo:mll9513 hypothetical protein YP_003137781.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ade:Adeh_0404 ABC transporter ATPase YP_003137782.1 KEGG: hypothetical protein, conserved YP_003137783.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_003137784.1 PFAM: peptidase M50; KEGG: ATEGY2; ATEGY2; metalloendopeptidase YP_003137785.1 shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradien YP_003137786.1 KEGG: dvl:Dvul_2945 hypothetical protein YP_003137787.1 PFAM: PhoH family protein; KEGG: afw:Anae109_2713 PhoH family protein YP_003137789.1 PFAM: methyltransferase type 12; methyltransferase type 11; methyltransferase; KEGG: sse:Ssed_1280 methylase involved in ubiquinone/menaquinone biosynthesis-like protein YP_003137790.1 KEGG: sde:Sde_2463 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_003137791.1 PFAM: inorganic pyrophosphatase; KEGG: bba:Bd0571 hypothetical protein YP_003137792.1 KEGG: hypothetical protein YP_003137793.1 KEGG: hypothetical protein LOC100217812 YP_003137794.1 PFAM: protein of unknown function DUF86; KEGG: glo:Glov_3038 protein of unknown function DUF86 YP_003137795.1 PFAM: DNA polymerase beta domain protein region; KEGG: azo:azo0144 nucleotidyltransferase YP_003137796.1 KEGG: pmu:PM1197 VatB YP_003137797.1 PFAM: methylenetetrahydrofolate reductase; KEGG: geo:Geob_1801 methylenetetrahydrofolate reductase YP_003137798.1 KEGG: hypothetical protein; K01867 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003137799.1 KEGG: har:HEAR2418 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; response regulator receiver; PAS domain containing protein YP_003137800.1 PFAM: Domain of unknown function DUF1818; KEGG: hypothetical protein, conserved YP_003137802.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and subunit alphas YP_003137803.1 PFAM: oxidoreductase molybdopterin binding; KEGG: afw:Anae109_1055 oxidoreductase molybdopterin binding YP_003137804.1 NADH-dependent; catalyzes a key regulatory step in fatty acid biosynthesis YP_003137805.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: scl:sce7185 cAMP phosphodiesterase YP_003137806.1 KEGG: viral A-type inclusion protein YP_003137807.1 SMART: Resolvase RNase H domain protein fold; KEGG: dat:HRM2_18530 transcriptional accessory protein (S1 RNA binding domain protein) YP_003137808.1 PFAM: glycosyl transferase family 2; KEGG: azo:azo2380 glycosyltransferase YP_003137809.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rpa:RPA2560 ABC transporter periplasmic amino acid binding protein AapJ-1 YP_003137810.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV3057 L-amino acid ABC transporter permease protein YP_003137811.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU0238 radical SAM domain-containing protein YP_003137812.1 PFAM: Domain of unknown function DUF1830 YP_003137813.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce0260 hypothetical protein YP_003137814.1 KEGG: hypothetical protein YP_003137815.1 PFAM: protein of unknown function DUF427; KEGG: mrd:Mrad2831_5492 hypothetical protein YP_003137816.1 KEGG: dar:Daro_3749 hypothetical protein YP_003137817.1 PFAM: phycobilisome linker polypeptide; phycobilisome protein; KEGG: phycobilisome linker polypeptide YP_003137818.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: afr:AFE_0434 ribulose bisphosphate carboxylase, large subunit 2 YP_003137819.1 PFAM: Mo-dependent nitrogenase family protein YP_003137824.1 KEGG: viral A-type inclusion protein YP_003137826.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003137828.1 KEGG: hypothetical LOC413161 YP_003137829.1 PFAM: integrase family protein; KEGG: pin:Ping_2946 phage integrase family protein YP_003137832.1 KEGG: similar to gamma-aminobutyric acid A receptor, epsilon YP_003137840.1 KEGG: afw:Anae109_3762 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: ATPase AAA central domain protein; DNA polymerase III delta; SMART: ATPase AAA YP_003137841.1 KEGG: GG18845 gene product from transcript GG18845-RA YP_003137842.1 PFAM: stress protein; KEGG: hso:HS_0633 stress response protein YP_003137843.1 PFAM: stress protein; KEGG: noc:Noc_1002 stress protein YP_003137844.1 PFAM: stress protein; KEGG: psp:PSPPH_0837 tellurium resistance protein TerD YP_003137845.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: slo:Shew_1098 riboflavin biosynthesis protein RibF YP_003137846.1 PFAM: alpha/beta hydrolase fold protein; KEGG: hypothetical protein YP_003137848.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: predicted protein YP_003137850.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; Myb DNA-binding; KEGG: hypothetical protein; K03501 glucose inhibited division protein B YP_003137851.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: geo:Geob_3183 metallophosphoesterase YP_003137852.1 PFAM: protein of unknown function DUF58; KEGG: gur:Gura_0188 hypothetical protein YP_003137854.1 PFAM: ATP-binding region ATPase domain protein; CHASE domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: scl:sce8434 two-component hybrid sensor and regulator YP_003137855.1 KEGG: hypothetical protein YP_003137857.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: gbm:Gbem_3051 multi-sensor hybrid histidine kinase YP_003137860.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_003137861.1 PFAM: HupE/UreJ protein; KEGG: mpo:Mpop_4228 HupE/UreJ protein YP_003137862.1 KEGG: CLIP1; CAP-GLY domain containing linker protein 1; K10421 CAP-Gly domain-containing linker protein 1 YP_003137864.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_003137866.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: kpn:KPN_03954 glutaredoxin 3 YP_003137867.1 PFAM: beta-lactamase domain protein; KEGG: hypothetical protein YP_003137868.1 PFAM: conserved hypothetical protein; KEGG: sbm:Shew185_1696 hypothetical protein YP_003137869.1 PFAM: cytochrome c class I; KEGG: vei:Veis_1827 cytochrome c, class I YP_003137872.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gur:Gura_3801 NAD-dependent epimerase/dehydratase YP_003137873.1 PFAM: glycosyl transferase family 2; KEGG: ade:Adeh_3054 glycosyl transferase family protein YP_003137874.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: net:Neut_0989 alpha amylase, catalytic region YP_003137876.1 TIGRFAM: photosystem II protein PsbQ; KEGG: hypothetical protein; K08901 photosystem II oxygen-evolving enhancer protein YP_003137877.1 PFAM: alpha/beta hydrolase fold protein; KEGG: hydrolase, alpha/beta fold family protein YP_003137880.1 KEGG: lch:Lcho_1808 TIR protein YP_003137881.1 KEGG: bpd:BURPS668_3046 hypothetical protein YP_003137882.1 KEGG: ppw:PputW619_2278 hypothetical protein YP_003137883.1 KEGG: bcm:Bcenmc03_1790 hypothetical protein YP_003137884.1 KEGG: bte:BTH_I0097 hypothetical protein YP_003137885.1 maintains the balance of metabolites in the pentose-phosphate pathway YP_003137887.1 PFAM: membrane protein of unknown function; KEGG: bgl:bglu_1g02000 predicted membrane protein YP_003137888.1 KEGG: gur:Gura_0625 hypothetical protein YP_003137889.1 PFAM: OstA family protein; KEGG: gsu:GSU1889 hypothetical protein YP_003137890.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: afr:AFE_3026 ABC transporter ATP-binding protein YP_003137891.1 PFAM: permease YjgP/YjgQ family protein; KEGG: geo:Geob_1523 permease YjgP/YjgQ family protein YP_003137892.1 PFAM: CobB/CobQ domain protein glutamine amidotransferase YP_003137893.1 KEGG: mca:MCA0408 hypothetical protein YP_003137894.1 KEGG: mca:MCA0409 lipoprotein YP_003137895.1 PFAM: protein-arginine deiminase domain protein; protein-arginine deiminase (PAD) central region; KEGG: hypothetical protein YP_003137896.1 KEGG: tbd:Tbd_0211 hypothetical protein YP_003137898.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_003137899.1 KEGG: scl:sce7388 hypothetical protein YP_003137900.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: vha:VIBHAR_06836 peptidase YP_003137902.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: hypothetical protein, conserved YP_003137903.1 KEGG: glutathione S-transferase YP_003137905.1 PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: hypothetical protein YP_003137906.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sfu:Sfum_0297 AMP-dependent synthetase and ligase YP_003137907.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: pol:Bpro_4273 SUF system FeS assembly protein YP_003137908.1 KEGG: bbt:BBta_5312 molybdenum cofactor cytidylyltransferase / molybdopterin molybdochelatase YP_003137910.1 KEGG: mex:Mext_2245 hypothetical protein YP_003137911.1 PFAM: cytochrome P450; KEGG: scl:sce3065 cytochrome P450 CYP110H1 YP_003137912.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: CPLD26; pyridoxamine 5' phosphate oxidase-related protein YP_003137913.1 PFAM: protein of unknown function DUF323; KEGG: dps:DP2315 hypothetical protein YP_003137914.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: geo:Geob_3649 radical SAM protein YP_003137915.1 KEGG: rpt:Rpal_2335 hypothetical protein YP_003137916.1 PFAM: metallophosphoesterase; KEGG: sfu:Sfum_1247 metallophosphoesterase YP_003137917.1 PFAM: transposase-like Mu; Integrase catalytic region; KEGG: msu:MS2016 hypothetical protein YP_003137918.1 KEGG: abm:ABSDF3330 ATP-binding YP_003137919.1 KEGG: dvu:DVU2019 hypothetical protein YP_003137920.1 PFAM: PglZ domain protein; KEGG: dvu:DVU2020 hypothetical protein YP_003137921.1 PFAM: XisI protein YP_003137922.1 PFAM: XisH protein YP_003137923.1 KEGG: dvu:DVU2022 hypothetical protein YP_003137924.1 KEGG: eba:ebA5225 hypothetical protein YP_003137926.1 KEGG: dvu:DVU2025 hypothetical protein YP_003137927.1 PFAM: Domain of unknown function DUF1788; KEGG: maq:Maqu_0556 hypothetical protein YP_003137928.1 SMART: regulatory protein MerR; KEGG: afw:Anae109_4225 MerR family transcriptional regulator YP_003137929.1 KEGG: hypothetical protein YP_003137930.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: sat:SYN_00307 aspartyl/glutamyl-tRNA(asn/Gln) amidotransferase subunit C YP_003137931.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: ycf3; photosystem I assembly protein Ycf3 YP_003137932.1 catalyzes the formation of precorrin-8x from precorrin-6y YP_003137933.1 PFAM: sulfotransferase; KEGG: hypothetical protein YP_003137934.1 PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: glo:Glov_2390 thiamine pyrophosphate protein TPP binding domain protein YP_003137936.1 KEGG: kpe:KPK_2833 hypothetical protein YP_003137937.1 PFAM: pentapeptide repeat protein; KEGG: sat:SYN_00349 pentapeptide repeat-containing protein YP_003137938.1 KEGG: sfu:Sfum_1516 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein YP_003137940.1 PFAM: MASE1 domain protein; ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: hch:HCH_00309 signal transduction histidine kinase YP_003137941.1 KEGG: mrd:Mrad2831_2553 hypothetical protein YP_003137942.1 KEGG: GA14308 gene product from transcript GA14308-RA; K01443 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_003137943.1 PFAM: TOBE domain protein; KEGG: sbn:Sbal195_1632 TOBE domain-containing protein YP_003137944.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sfu:Sfum_3697 molybdenum ABC transporter periplasmic molybdate-binding protein YP_003137945.1 KEGG: bxe:Bxe_B1189 ABC molybdenum transporter fused ATPase and inner membrane subunits; TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: ABC transporter; binding-protein-dependent transport systems inner membrane component; SMART: ATPase AAA YP_003137946.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_003137947.1 KEGG: pla:Plav_1509 hypothetical protein YP_003137948.1 PFAM: phytanoyl-CoA dioxygenase; KEGG: pla:Plav_2677 phytanoyl-CoA dioxygenase YP_003137949.1 PFAM: peptidase M23; KEGG: pzu:PHZ_c0491 peptidase YP_003137950.1 KEGG: hypothetical protein YP_003137951.1 PFAM: beta-lactamase; KEGG: mxa:MXAN_7171 beta lactamase family protein YP_003137952.1 SMART: HTTM domain protein; KEGG: hypothetical protein YP_003137954.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hypothetical protein, conserved YP_003137956.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: rle:RL0899 maturation protein YP_003137957.1 KEGG: hypothetical protein YP_003137958.1 PFAM: UspA domain protein; KEGG: ppd:Ppro_3112 UspA domain-containing protein YP_003137959.1 KEGG: ATTIC21/CIA5/PIC1/TIC21 (CHLOROPLAST IMPORT APPARATUS 5); copper uptake transmembrane transporter/ iron ion transmembrane transporter/ protein homodimerization YP_003137960.1 KEGG: similar to Prg4 protein YP_003137961.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pha:PSHAb0027 Peyer's patch-specific virulence factor GipA (transposase) YP_003137962.1 KEGG: sfu:Sfum_0927 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein YP_003137963.1 PFAM: tRNA-hydroxylase; KEGG: abo:ABO_1203 tRNA-(ms(2)io(6)a)-hydroxylase YP_003137964.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_003137966.1 KEGG: cja:CJA_3412 O-antigen polymerase family protein YP_003137967.1 PFAM: glycosyl transferase family 2; KEGG: sat:SYN_00821 glycosyltransferase YP_003137968.1 PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_1030 glycosyl transferase, group 1 YP_003137969.1 PFAM: glycosyl transferase family 8; KEGG: reu:Reut_A2558 glycosyl transferase family protein YP_003137970.1 KEGG: hypothetical protein YP_003137972.1 PFAM: 2OG-Fe(II) oxygenase; SMART: prolyl 4-hydroxylase subunit alpha; KEGG: ilo:IL0759 hydroxylase YP_003137973.1 KEGG: GD20044 gene product from transcript GD20044-RA YP_003137974.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_003137975.1 KEGG: cell surface protein YP_003137976.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7168 hypothetical protein YP_003137977.1 PFAM: protein of unknown function DUF608; KEGG: gba2; glucosidase, beta (bile acid) 2 YP_003137978.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_003137980.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7446 hypothetical protein YP_003137981.1 TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GCS2; KEGG: scl:sce3587 carboxylate-amine ligase YP_003137982.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: hypothetical protein YP_003137984.1 PFAM: peptidase M23; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: ade:Adeh_0752 peptidoglycan-binding peptidase M23B YP_003137985.1 KEGG: hypothetical protein YP_003137987.1 PFAM: N-6 DNA methylase; KEGG: afr:AFE_0826 type I restriction-modification system, M subunit YP_003137988.1 PFAM: protein of unknown function DUF559; KEGG: ret:RHE_CH01424 hypothetical protein YP_003137989.1 KEGG: mca:MCA0653 hypothetical protein YP_003137990.1 PFAM: YcfA family protein; KEGG: gur:Gura_0355 hypothetical protein YP_003137991.1 PFAM: restriction modification system DNA specificity domain; KEGG: ftn:FTN_0285 type I restriction-modification system, subunit S YP_003137994.1 SMART: nucleotide binding protein PINc; KEGG: tmz:Tmz1t_1065 PilT protein domain protein YP_003137995.1 KEGG: afr:AFE_0841 type I restriction-modification system, R subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase YP_003137996.1 PFAM: protein of unknown function DUF45; KEGG: afr:AFE_0842 hypothetical protein YP_003137997.1 KEGG: ppr:PBPRA1623 hypothetical protein YP_003137998.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00317 sugar ABC transporter permease protein YP_003137999.1 PFAM: phosphatidate cytidylyltransferase; KEGG: CTP:phosphatidate cytidylyltransferase, phosphatidate cytidylyltransferase YP_003138000.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003138001.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_003138003.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce5807 protein kinase YP_003138004.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_003138006.1 participates in electron transfer in photosystem I YP_003138007.1 PFAM: protein of unknown function DUF1702 YP_003138008.1 TIGRFAM: FeS-containing Cyanobacterial-specific oxidoreductase; PFAM: protein of unknown function DUF512; KEGG: gur:Gura_1774 hypothetical protein YP_003138010.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mxa:MXAN_6475 ABC transporter ATP-binding protein YP_003138011.1 KEGG: noc:Noc_1781 ABC transporter inner membrane subunit YP_003138013.1 PFAM: protein of unknown function DUF355; KEGG: dal:Dalk_1099 protein of unknown function DUF355 YP_003138014.1 KEGG: yen:YE2684 hypothetical protein YP_003138015.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SMART: helix-turn-helix domain protein; KEGG: vok:COSY_0292 4Fe-4S ferredoxin YP_003138016.1 TIGRFAM: sulfate transporter; PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; KEGG: mms:mma_2411 sulfate transporter YP_003138017.1 KEGG: afw:Anae109_4383 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase barrel; HpcH/HpaI aldolase; pyruvate kinase alpha/beta YP_003138018.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: cti:RALTA_A1561 fermentative D-lactate dehydrogenase, NAD-dependent YP_003138019.1 PFAM: alpha/beta hydrolase fold protein; KEGG: hypothetical protein YP_003138020.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: scl:sce4579 hydrogenase expression/formation protein YP_003138021.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_003138022.1 PFAM: beta-lactamase domain protein; KEGG: scl:sce0859 hypothetical protein YP_003138023.1 oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis YP_003138024.1 SMART: peptidase metallopeptidase; KEGG: interstitial collagenase YP_003138025.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pzu:PHZ_c1752 preprotein translocase, SecG subunit YP_003138026.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_003138027.1 KEGG: noc:Noc_0155 hypothetical protein YP_003138028.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr1354 peptide ABC transporter permease protein YP_003138030.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7056 hypothetical protein YP_003138031.1 PFAM: ThiJ/PfpI domain protein; KEGG: bbt:BBta_4230 hypothetical protein YP_003138032.1 PFAM: extracellular solute-binding protein family 5; KEGG: bra:BRADO1093 oligopeptide ABC transporter periplasmic substrate-binding protein YP_003138034.1 PFAM: GUN4 domain protein; KEGG: gme:Gmet_1196 PASTA YP_003138035.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: gur:Gura_1732 anthranilate synthase component II YP_003138036.1 PFAM: diacylglycerol kinase; KEGG: gur:Gura_1783 diacylglycerol kinase YP_003138037.1 PFAM: protein of unknown function UPF0054; KEGG: dno:DNO_1243 hypothetical protein YP_003138040.1 KEGG: scl:sce7899 phosphoprotein phosphatase; PFAM: protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein YP_003138041.1 KEGG: lch:Lcho_2947 2-alkenal reductase YP_003138042.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: ade:Adeh_4137 ABC transporter ATPase subunit YP_003138043.1 PFAM: lipolytic protein G-D-S-L family; KEGG: rpe:RPE_1115 hypothetical protein YP_003138044.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; involved in carboxysome formation YP_003138045.1 KEGG: hypothetical protein, conserved YP_003138046.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_003138047.1 PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: pae:PA0074 serine/threonine protein kinase PpkA YP_003138048.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_003138049.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mpt:Mpe_B0474 sirohydrochlorin cobaltochelatase YP_003138050.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0262 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003138051.1 PFAM: thioredoxin domain protein; KEGG: thioredoxin-like protein YP_003138058.1 fusion of two genes involved in the fifth and sixth steps of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate and converts orotidine 5'phosphate to UMP and carbon dioxide YP_003138059.1 TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: hypothetical protein YP_003138060.1 PFAM: protein of unknown function DUF192; KEGG: bja:blr4411 hypothetical protein YP_003138061.1 PFAM: protein of unknown function DUF262; KEGG: scl:sce6757 hypothetical protein YP_003138063.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ompR-like transcriptional regulator YP_003138064.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_003138065.1 PFAM: pentapeptide repeat protein; KEGG: mms:mma_2224 pentapeptide repeat-containing protein YP_003138067.1 PFAM: glycosyl transferase family 39; KEGG: geo:Geob_0316 glycosyl transferase family 39 YP_003138069.1 KEGG: lpp:lpp1078 hypothetical protein; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_003138070.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_003138071.1 PFAM: ABC transporter; KEGG: ret:RHE_CH00753 polysaccharide ABC transporter permease protein YP_003138073.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mfa:Mfla_1199 ABC transporter YP_003138074.1 PFAM: glycosyl transferase group 1; KEGG: afr:AFE_0081 mannosyltransferase YP_003138076.1 PFAM: glycosyl transferase group 1; KEGG: gur:Gura_3800 glycosyl transferase, group 1 YP_003138078.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: hpy:HP0860 hypothetical protein YP_003138079.1 TIGRFAM: phosphoheptose isomerase; KEGG: hac:Hac_1220 phosphoheptose isomerase YP_003138080.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: sat:SYN_00585 GDP-L-fucose synthase YP_003138081.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dat:HRM2_45220 arsenical-resistance protein YP_003138082.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: eca:ECA1605 DNA-binding transcriptional repressor ArsR YP_003138083.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: scl:sce5062 hypothetical protein YP_003138085.1 PFAM: metallophosphoesterase YP_003138086.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_003138087.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003138088.1 PFAM: carbohydrate-selective porin OprB; S-layer domain protein YP_003138089.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cja:CJA_1743 LysR family transcriptional regulator YP_003138090.1 PFAM: UspA domain protein; KEGG: hypothetical protein LOC100209624 YP_003138091.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_003138092.1 PFAM: protein of unknown function DUF561; KEGG: hypothetical protein YP_003138093.1 PFAM: multicopper oxidase type 2; KEGG: sde:Sde_0315 phosphoenolpyruvate-protein phosphotransferase YP_003138094.1 KEGG: sfu:Sfum_2957 glycogen/starch/alpha-glucan phosphorylases; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003138096.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003138097.1 PFAM: Orn/Lys/Arg decarboxylase major region; Soluble liver antigen/liver pancreas antigen; Orn/Lys/Arg decarboxylase domain protein; aminotransferase class I and II; aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: hypothetical protein YP_003138098.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: tcx:Tcr_0541 two component transcriptional regulator YP_003138100.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: nwi:Nwi_0756 cobalamin synthesis protein, CobW YP_003138101.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: dno:DNO_0576 hypothetical protein YP_003138102.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin domain protein; KEGG: hypothetical protein; K00384 thioredoxin reductase (NADPH) YP_003138103.1 KEGG: cvi:CV_0220 methylated-DNA-[protein]-cysteine S-methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type YP_003138104.1 KEGG: rpi:Rpic_2775 protein of unknown function DUF6 transmembrane YP_003138105.1 KEGG: sdk2-a; nuclear protein SDK2 YP_003138107.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: lpc:LPC_1187 RNA methyltransferase YP_003138108.1 KEGG: ara:Arad_3635 hydrolase protein YP_003138109.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: zgc:112315 YP_003138111.1 KEGG: noc:Noc_0904 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase all-beta; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003138112.1 KEGG: hypothetical protein; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003138113.1 KEGG: dvl:Dvul_1999 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_003138114.1 KEGG: hypothetical protein; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein YP_003138115.1 KEGG: aha:AHA_0939 hypothetical protein YP_003138116.1 KEGG: mca:MCA0044 hypothetical protein YP_003138117.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_003138118.1 KEGG: sfu:Sfum_0046 hypothetical protein YP_003138119.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_003138120.1 PFAM: rhodanese domainprotein; SMART: Rhodanese domain protein; KEGG: mfa:Mfla_2319 rhodanese-like protein YP_003138121.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_003138122.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mca:MCA1821 hypothetical protein YP_003138123.1 PFAM: exopolysaccharide synthesis protein ExoD; KEGG: neu:NE0797 hypothetical protein YP_003138124.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_003138125.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sat:SYN_01019 two-component response regulator YP_003138126.1 TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase; NADH:flavin oxidoreductase/NADH oxidase; KEGG: rbo:A1I_01285 dihydrouridine synthase Dus YP_003138127.1 PFAM: regulatory protein TetR; KEGG: gur:Gura_0986 TetR family transcriptional regulator YP_003138128.1 PFAM: Domain of unknown function DUF1821 YP_003138130.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: gme:Gmet_0408 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_003138132.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_003138133.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_003138134.1 PFAM: hypothetical protein; SMART: hypothetical protein; TIR protein; KEGG: hypothetical protein YP_003138135.1 PFAM: C-methyltransferase; methyltransferase domain protein; methyltransferase type 12; methyltransferase type 11; KEGG: mrd:Mrad2831_1221 C-methyltransferase YP_003138136.1 PFAM: lipase class 3; KEGG: hch:HCH_04845 class 3 lipase YP_003138138.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: scl:sce0912 hypothetical protein YP_003138139.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hypothetical protein; K00059 3-oxoacyl-(acyl-carrier-protein) reductase YP_003138141.1 PFAM: glycosyl transferase group 1; KEGG: probable glycosyl transferase YP_003138142.1 KEGG: hypothetical protein YP_003138143.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4237 hypothetical protein YP_003138145.1 PFAM: protein of unknown function Spy-related; KEGG: hch:HCH_00063 hypothetical protein YP_003138147.1 PFAM: protein of unknown function DUF29; KEGG: mch:Mchl_3241 protein of unknown function DUF29 YP_003138148.1 PFAM: protein of unknown function DUF1526; KEGG: lpc:LPC_2819 hypothetical protein YP_003138149.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: ppabcb1; ATP-binding cassette transporter subfamily B, member 1, group LLP protein PpABCB1 YP_003138150.1 KEGG: pat:Patl_1097 hypothetical protein YP_003138151.1 KEGG: dhx16; DEAH (Asp-Glu-Ala-His) box polypeptide 16 YP_003138152.1 KEGG: ecp:ECP_3026 hypothetical protein YP_003138154.1 PFAM: GUN4 domain protein; KEGG: dat:HRM2_34080 hypothetical protein YP_003138155.1 KEGG: sde:Sde_2338 hypothetical protein YP_003138157.1 cytochrome b6-f complex subunit 8; with PetL, PetG and PetM makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_003138158.1 KEGG: hypothetical protein YP_003138160.1 KEGG: hypothetical protein YP_003138161.1 TIGRFAM: DNA sulfur modification protein DndE; PFAM: Domain of unknown function DUF1832; KEGG: dal:Dalk_4796 DNA sulfur modification protein DndE YP_003138162.1 TIGRFAM: DNA sulfur modification protein DndD; PFAM: SMC domain protein; KEGG: dal:Dalk_4797 DNA sulfur modification protein DndD YP_003138163.1 TIGRFAM: sulfurtransferase DndC; KEGG: gur:Gura_2474 hypothetical protein YP_003138164.1 KEGG: pca:Pcar_0295 restriction endonuclease YP_003138165.1 TIGRFAM: DGQHR domain protein; KEGG: dal:Dalk_4799 DNA sulfur modification protein DndB YP_003138166.1 TIGRFAM: DGQHR domain protein YP_003138167.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003138168.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: mxa:MXAN_3230 hypothetical protein YP_003138169.1 PFAM: protein of unknown function UPF0079; KEGG: gme:Gmet_1881 hypothetical protein YP_003138170.1 TIGRFAM: AbrB family transcriptional regulator PFAM: SpoVT/AbrB domain protein; KEGG: mca:MCA3006 AbrB family transcriptional regulator YP_003138171.1 KEGG: neu:NE0921 hypothetical protein YP_003138172.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_003138173.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_003138175.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: mno:Mnod_2480 peptidase C14 caspase catalytic subunit P20 YP_003138176.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003138177.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: sat:SYN_02177 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase YP_003138178.1 PFAM: protein of unknown function DUF1292; KEGG: hypothetical protein YP_003138179.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_003138180.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003138181.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_003138182.1 PFAM: protein of unknown function DUF1555; KEGG: avn:Avin_45680 alkaline phosphatase YP_003138185.1 TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: pin:Ping_3188 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_003138187.1 PFAM: protein of unknown function DUF187; KEGG: ypb:YPTS_2665 hypothetical protein YP_003138188.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3181 precorrin-3 methyltransferase YP_003138189.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_3382 heavy metal sensor signal transduction histidine kinase YP_003138190.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gsu:GSU0451 DNA-binding response regulator YP_003138191.1 KEGG: hypothetical protein YP_003138193.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; KEGG: net:Neut_0311 copper-resistance protein, CopA family protein YP_003138194.1 PFAM: copper resistance B precursor; KEGG: afw:Anae109_4266 copper resistance B precursor YP_003138195.1 KEGG: sat:SYN_01583 hypothetical protein YP_003138196.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; KEGG: noc:Noc_2686 transposase YP_003138197.1 PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sfr:Sfri_0211 MerR family transcriptional regulator protein YP_003138198.1 TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ppd:Ppro_3639 heavy metal translocating P-type ATPase YP_003138199.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_05809 ABC-type amino acid transport system, permease component YP_003138200.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: scl:sce4618 peroxiredoxin YP_003138201.1 TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: sfu:Sfum_2059 triose-phosphate isomerase YP_003138202.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: bpy:Bphyt_6272 glycosyl transferase, WecB/TagA/CpsF family YP_003138203.1 KEGG: hypothetical protein, conserved YP_003138204.1 PFAM: glycosyl transferase group 1; KEGG: SQD2; glycosyl transferase, group 1 YP_003138205.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_003138206.1 PFAM: plasmid stabilization system; KEGG: rpc:RPC_2216 plasmid stabilization system protein YP_003138207.1 KEGG: rfe:RF_1339 transcriptional regulator YP_003138208.1 PFAM: CHASE2 domain protein; KEGG: lch:Lcho_1807 WD-40 repeat-containing protein YP_003138209.1 PFAM: beta-lactamase domain protein; flavin reductase domain protein FMN-binding; flavodoxin/nitric oxide synthase; KEGG: hypothetical protein YP_003138210.1 KEGG: afr:AFE_3115 hypothetical protein YP_003138211.1 PFAM: flavin reductase domain protein FMN-binding; beta-lactamase domain protein; KEGG: hypothetical protein YP_003138213.1 PFAM: FAD dependent oxidoreductase; amine oxidase; KEGG: predicted protein YP_003138214.1 KEGG: hypothetical protein YP_003138215.1 KEGG: dal:Dalk_3989 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_003138216.1 PFAM: protein of unknown function DUF477; KEGG: Os05g0401100; hypothetical protein YP_003138217.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: hypothetical protein YP_003138219.1 KEGG: sde:Sde_1638 hypothetical protein YP_003138222.1 PFAM: glucose sorbosone dehydrogenase; KEGG: tgr:Tgr7_3156 glucose sorbosone dehydrogenase YP_003138223.1 PFAM: protein of unknown function UPF0153; KEGG: hypothetical protein; K06940 YP_003138224.1 PFAM: protein of unknown function DUF888 YP_003138225.1 PFAM: peptidase T2 asparaginase 2; KEGG: ftn:FTN_1208 asparaginase YP_003138226.1 KEGG: fph:Fphi_0460 hypothetical protein YP_003138227.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: pin:Ping_1218 (NiFe) hydrogenase maturation protein HypF YP_003138228.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: scl:sce2769 class III alcohol dehydrogenase YP_003138229.1 KEGG: hypothetical protein YP_003138230.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: eba:ebA1078 molybdopterin biosynthesis MoeA protein YP_003138231.1 PFAM: protein of unknown function DUF1400; KEGG: vei:Veis_4713 lipoprotein signal peptide YP_003138233.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pzu:PHZ_c1111 GCN5-related N-acetyltransferase YP_003138234.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_003138235.1 PFAM: hypothetical protein; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: Os02g0834700; hypothetical protein; K07071 YP_003138236.1 TIGRFAM: photosystem II reaction center protein Psb28; PFAM: photosystem II protein PsbW class I; KEGG: photosystem II protein W YP_003138237.1 PFAM: PetM of cytochrome b6f complex subunit 7 YP_003138238.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_003138241.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_003138242.1 PFAM: S-layer domain protein YP_003138243.1 KEGG: afw:Anae109_4390 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003138244.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_003138246.1 PFAM: glycosyl transferase family 2; KEGG: bra:BRADO4817 glycosyl transferase family protein YP_003138247.1 PFAM: glycosyl transferase group 1; KEGG: mca:MCA1433 glycosyl transferase, group 1 family protein YP_003138248.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: bra:BRADO4824 UDP-glucose 4-epimerase (NAD-dependent epimerase/dehydratase) YP_003138249.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; dihydrodipicolinate reductase; KEGG: bcs:BCAN_B0113 hypothetical protein YP_003138250.1 PFAM: glycosyl transferase family 2; KEGG: ppg:PputGB1_2718 glycosyl transferase family protein YP_003138251.1 PFAM: pirin; KEGG: gbm:Gbem_3095 pirin domain protein YP_003138252.1 KEGG: pfl:PFL_0150 hypothetical protein YP_003138253.1 KEGG: dat:HRM2_34010 ATPase family protein YP_003138254.1 TIGRFAM: addiction module antidote protein, HigA family; KEGG: pla:Plav_2942 XRE family plasmid maintenance system antidote protein YP_003138255.1 PFAM: phosphopantetheine-binding; KEGG: hypothetical protein YP_003138256.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_003138258.1 KEGG: scl:sce2807 hypothetical protein YP_003138259.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_003138260.1 KEGG: aci:ACIAD1174 hypothetical protein YP_003138261.1 PFAM: histone deacetylase superfamily; KEGG: similar to predicted protein YP_003138262.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: dal:Dalk_1945 methyltransferase type 12 YP_003138263.1 KEGG: hch:HCH_06933 Tfp pilus assembly protein, major pilin PilA YP_003138264.1 PFAM: protein of unknown function DUF1350; KEGG: hypothetical protein YP_003138265.1 PFAM: cupin; KEGG: tdn:Suden_1847 hypothetical protein YP_003138266.1 KEGG: bbt:BBta_1569 hypothetical protein YP_003138269.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_003138270.1 transfers electrons from NAD(P)H to quinons in the respiratory chain YP_003138273.1 electron transport protein YP_003138274.1 PetD, with cytochrome b6, cytochrome F, and the Rieske protein, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_003138275.1 KEGG: azc:AZC_3466 hypotheticalprotein YP_003138276.1 KEGG: bur:Bcep18194_A5224 ATP-dependent Clp protease proteolytic subunit; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_003138277.1 KEGG: viral A-type inclusion protein YP_003138279.1 KEGG: gur:Gura_0355 hypothetical protein YP_003138280.1 PFAM: protein of unknown function UPF0150 YP_003138282.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: hpa:HPAG1_0201 transposase OrfB YP_003138284.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_003138285.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003138286.1 PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_4404 major facilitator family transporter YP_003138287.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_003138288.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_003138289.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gme:Gmet_3382 heavy metal sensor signal transduction histidine kinase YP_003138290.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pca:Pcar_3081 two component signal transduction response regulator YP_003138291.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gsu:GSU2946 DNA-binding heavy metal response regulator YP_003138292.1 PFAM: Hemolysin-type calcium-binding region; KEGG: dde:Dde_1416 hypothetical protein YP_003138293.1 KEGG: avi:Avi_5897 ABC transporter substrate binding protein (nitrate) YP_003138294.1 TIGRFAM: nitrate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1759 nitrate transport permease YP_003138295.1 KEGG: dar:Daro_0832 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003138296.1 KEGG: cti:RALTA_A0302 nitrate ABC transporter ATP_binding component; TIGRFAM: nitrate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003138299.1 PFAM: protein of unknown function UPF0150; KEGG: hpa:HPAG1_0204 hypothetical protein YP_003138300.1 PFAM: YcfA family protein; KEGG: abu:Abu_0898 hypothetical protein YP_003138301.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_003138302.1 PFAM: cupin; KEGG: dar:Daro_2588 cupin region YP_003138304.1 KEGG: sse:Ssed_1815 hypothetical protein YP_003138306.1 KEGG: ypy:YPK_0063 hypothetical protein YP_003138307.1 PFAM: protein of unknown function DUF262; KEGG: pcr:Pcryo_2494 hypothetical protein YP_003138308.1 KEGG: hypothetical protein; K03404 magnesium chelatase subunit ChlD; TIGRFAM: magnesium chelatase ATPase D; PFAM: magnesium chelatase ChlI subunit; SMART: von Willebrand factor type A; ATPase AAA YP_003138311.1 PFAM: phospholipase/carboxylesterase; KEGG: aeh:Mlg_2535 hypothetical protein YP_003138312.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003138313.1 KEGG: similar to coiled-coil and C2 domain containing 2A YP_003138314.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_003138315.1 PFAM: fatty acid desaturase; KEGG: pla:Plav_3282 fatty acid desaturase YP_003138317.1 KEGG: hypothetical protein YP_003138318.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: mxa:MXAN_6492 Gfo/Idh/MocA family oxidoreductase YP_003138319.1 PFAM: Penicillinase repressor; KEGG: smt:Smal_3667 transcriptional repressor, CopY family YP_003138320.1 PFAM: peptidase M56 BlaR1; KEGG: pin:Ping_1350 peptidase M56, BlaR1 YP_003138321.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: nis:NIS_1538 peroxiredoxin family protein YP_003138322.1 PFAM: plasmid stabilization system; KEGG: gur:Gura_3199 addiction module antitoxin YP_003138323.1 KEGG: gur:Gura_3200 hypothetical protein YP_003138324.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_003138327.1 PFAM: aminotransferase class V; KEGG: bid:Bind_3524 serine--glyoxylate transaminase YP_003138328.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; HI0933 family protein; KEGG: scl:sce3024 NADH dehydrogenase YP_003138329.1 KEGG: mxa:MXAN_3286 hypothetical protein YP_003138330.1 KEGG: hypothetical protein YP_003138331.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_003138332.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: ppd:Ppro_2071 hypothetical protein YP_003138335.1 KEGG: hypothetical protein YP_003138337.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_003138338.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; methyltransferase; KEGG: cvi:CV_3396 methyltransferase YP_003138339.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; extracellular ligand-binding receptor; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: glo:Glov_1587 serine/threonine protein kinase with CHASE2 sensor YP_003138340.1 PFAM: amine oxidase; KEGG: cak:Caul_1379 L-amino-acid oxidase YP_003138341.1 KEGG: mno:Mnod_1936 endonuclease/exonuclease/phosphatase YP_003138342.1 SMART: hypothetical protein; KEGG: hypothetical protein LOC100220864 YP_003138343.1 PFAM: metallophosphoesterase; KEGG: sat:SYN_00526 calcineurin-like phosphoesterase YP_003138344.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_003138346.1 PFAM: photosystem II protein PsbX; KEGG: photosystem II protein X YP_003138347.1 PFAM: Ycf66 family protein; KEGG: ycf66; hypothetical protein YP_003138348.1 KEGG: eba:ebA2650 translocation protein TolB YP_003138351.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: vha:VIBHAR_05253 alpha-amylase YP_003138352.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: glo:Glov_1806 heavy metal sensor signal transduction histidine kinase YP_003138353.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sde:Sde_3703 two component transcriptional regulator YP_003138354.1 PFAM: creatininase; KEGG: pla:Plav_1337 creatininase YP_003138355.1 KEGG: dat:HRM2_p00230 sensory box histidine kinase/response regulator protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein YP_003138356.1 PFAM: carbamoyltransferase; KEGG: bpy:Bphyt_0258 carbamoyltransferase YP_003138357.1 KEGG: cja:CJA_2488 hypothetical protein YP_003138358.1 KEGG: hch:HCH_00214 hypothetical protein YP_003138359.1 KEGG: mca:MCA1149 hypothetical protein YP_003138360.1 PFAM: sodium/hydrogen exchanger; KEGG: scl:sce7467 Na+/H+|K+/H+antiporter YP_003138361.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: abm:p2ABSDF0016 modification methylase (cytosine-specific methyltransferase)(HpaIIM-like) YP_003138362.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: scl:sce7466 TrkA family potassium uptake protein YP_003138363.1 PFAM: N-acetylneuraminic acid synthase domain; Xylose isomerase domain protein TIM barrel; SAF domain protein; CBS domain containing protein; KEGG: neu:NE1570 type III antifreeze protein YP_003138364.1 KEGG: mca:MCA0453 ParA family protein YP_003138365.1 PFAM: glutaminase, core; KEGG: bja:bll4798 glutaminase YP_003138366.1 KEGG: dde:Dde_0370 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: histidine kinase HAMP region domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003138367.1 KEGG: mca:MCA1149 hypothetical protein YP_003138368.1 PFAM: polypeptide-transport-associated domain protein ShlB-type; surface antigen (D15); surface antigen variable number repeat protein; KEGG: hch:HCH_03379 hemolysin activation/secretion protein YP_003138369.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: hch:HCH_03375 heme utilization/adhesion protein YP_003138372.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; note this protein has an additional C-terminal tail of unknown function as compared to similar bifunctional enzymes YP_003138373.1 KEGG: bid:Bind_3177 hypothetical protein YP_003138375.1 PFAM: chloride channel core; CBS domain containing protein; UspA domain protein; SMART: CBS domain containing protein; KEGG: mca:MCA2509 chloride channel protein YP_003138377.1 PFAM: O-methyltransferase family 3; KEGG: noc:Noc_1264 O-methyltransferase family protein YP_003138378.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: pca:Pcar_0610 thiamine biosynthesis protein ThiS YP_003138379.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate YP_003138380.1 PFAM: cyclase/dehydrase; KEGG: hypothetical protein YP_003138381.1 KEGG: hypothetical protein; TIGRFAM: carotene 7,8-desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase YP_003138382.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: vpa:VPA0138 TldD protein YP_003138384.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vpa:VPA0124 acetyltransferase YP_003138385.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003138386.1 PFAM: Domain of unknown function DUF1824; KEGG: predicted protein YP_003138387.1 KEGG: dat:HRM2_19780 hypothetical protein YP_003138391.1 PFAM: PEBP family protein; KEGG: sat:SYN_03131 phosphatidylethanolamine-binding protein YP_003138392.1 PFAM: pentapeptide repeat protein; KEGG: gur:Gura_3507 pentapeptide repeat-containing protein YP_003138393.1 KEGG: geo:Geob_1970 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase; BRCT domain protein; DNA-binding protein YP_003138394.1 PFAM: phospholipase/carboxylesterase; KEGG: pat:Patl_3337 phospholipase/carboxylesterase YP_003138396.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: gur:Gura_1670 non-specific protein-tyrosine kinase YP_003138397.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003138398.1 TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: scl:sce2296 4-alpha-glucanotransferase YP_003138400.1 KEGG: YALI0B21846p; K00457 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_003138402.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mlo:mll7176 ABC transporter ATP-binding protein YP_003138403.1 KEGG: hypothetical protein YP_003138404.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: sil:SPOA0123 hypothetical protein YP_003138405.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_1502 LysR family transcriptional regulator YP_003138407.1 TIGRFAM: methyltransferase; KEGG: noc:Noc_2028 hypothetical protein YP_003138408.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_003138409.1 PFAM: photosystem I reaction center protein PsaF subunit III; KEGG: hypothetical protein; K02694 photosystem I subunit III YP_003138410.1 Enables the organization of the psaE and psaF subunits YP_003138411.1 PFAM: stem cell self-renewal protein Piwi domain protein; KEGG: hip:CGSHiEE_02760 transcription regulator YP_003138412.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_003138413.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce3871 hypothetical protein YP_003138414.1 PFAM: rhomboid family protein; KEGG: mfa:Mfla_1842 rhomboid-like protein YP_003138416.1 KEGG: Os08g0359000; hypothetical protein YP_003138417.1 KEGG: sfu:Sfum_2957 glycogen/starch/alpha-glucan phosphorylases; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003138418.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: msl:Msil_2382 peptidase C14 caspase catalytic subunit P20 YP_003138419.1 KEGG: scl:sce3893 hypothetical protein YP_003138420.1 KEGG: scl:sce3894 hypothetical protein YP_003138421.1 PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_A3860 glycosyl transferase YP_003138424.1 KEGG: hypothetical protein YP_003138426.1 KEGG: hypothetical protein YP_003138427.1 PFAM: BolA family protein; KEGG: rpb:RPB_3710 BolA-like protein YP_003138428.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: GRX3; glutaredoxin, CGFS type YP_003138430.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: afw:Anae109_3104 two component transcriptional regulator YP_003138431.1 TIGRFAM: C-3',4' desaturase CrtD; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: carotenoid isomerase; K09835 carotenoid isomerase YP_003138432.1 PFAM: protein of unknown function DUF820; KEGG: gur:Gura_3383 hypothetical protein YP_003138434.1 KEGG: ank:AnaeK_0141 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_003138435.1 PFAM: protein of unknown function UPF0118; KEGG: psa:PST_0396 hypothetical protein YP_003138437.1 KEGG: gsu:GSU1846 glycosyl transferase domain-containing protein; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_003138438.1 PFAM: pentapeptide repeat protein; KEGG: scl:sce8323 hypothetical protein YP_003138439.1 PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce4530 acetyltransferase YP_003138440.1 KEGG: cvi:CV_0751 hypothetical protein YP_003138441.1 KEGG: rle:pRL90144 exopolysaccharide biosynthesis-related protein; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_003138442.1 PFAM: glycosyl transferase group 1; KEGG: probabale LPS (Lipopolysaccharide) glycosyltransferase YP_003138444.1 PFAM: glycosyl transferase group 1; KEGG: afr:AFE_0081 mannosyltransferase YP_003138445.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3779 glycosyl transferase family protein YP_003138449.1 PFAM: glycosyl transferase group 1; KEGG: gbm:Gbem_2565 glycosyl transferase group 1 YP_003138450.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gsu:GSU1505 ABC transporter ATP-binding protein YP_003138451.1 TIGRFAM: methyltransferase FkbM family; KEGG: bbt:BBta_6684 methyltransferase YP_003138452.1 PFAM: methyltransferase type 11; KEGG: gbm:Gbem_2566 methyltransferase type 11 YP_003138453.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_003138454.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_003138455.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: hch:HCH_00579 response regulator YP_003138457.1 blocks the formation of polar Z-ring septums YP_003138458.1 TIGRFAM: septum site-determining protein MinD; PFAM: cobyrinic acid ac-diamide synthase; KEGG: MIND1; chloroplast septum site-determining protein; K03609 septum site-determining protein MinD YP_003138459.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_003138460.1 KEGG: sdn:Sden_3399 transposase, IS4 YP_003138461.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: PRPL21; plastid ribosomal protein L21 YP_003138462.1 involved in the peptidyltransferase reaction during translation YP_003138463.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: rpe:RPE_3636 CheW protein YP_003138464.1 PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: maq:Maqu_3772 CheA signal transduction histidine kinase YP_003138465.1 PFAM: chemotaxis sensory transducer; GAF domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; GAF domain protein; histidine kinase HAMP region domain protein; KEGG: aeh:Mlg_0358 methyl-accepting chemotaxis sensory transducer YP_003138466.1 KEGG: reh:H16_B0950 hypothetical protein YP_003138467.1 PFAM: chemotaxis sensory transducer; GAF domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; GAF domain protein; histidine kinase HAMP region domain protein; KEGG: tgr:Tgr7_2901 methyl-accepting chemotaxis sensory transducer YP_003138468.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: vsp:VS_0847 chemotaxis protein CheW YP_003138469.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: tbd:Tbd_2551 response regulator receiver domain-containing protein YP_003138470.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rpi:Rpic_0612 response regulator receiver protein YP_003138471.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: nucleotidyl transferase; KEGG: sat:SYN_02649 glucose-1-phosphate cytidylyltransferase YP_003138472.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; polysaccharide biosynthesis protein CapD; KEGG: sed:SeD_A2431 CDP-glucose 4,6-dehydratase YP_003138473.1 PFAM: C-methyltransferase; methyltransferase domain protein; methyltransferase type 11; methyltransferase type 12; KEGG: met:M446_4987 C-methyltransferase YP_003138474.1 KEGG: oca:OCAR_4621 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003138475.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sat:SYN_02652 CDP-4-dehydro-6-deoxy-D-gulose 4-reductase YP_003138477.1 KEGG: similar to prostate specific G-protein coupled receptor; PSGR YP_003138478.1 PFAM: glycosyl transferase family 2; KEGG: bac:BamMC406_2285 glycosyl transferase family protein YP_003138479.1 PFAM: FAD linked oxidase; KEGG: noc:Noc_1951 FAD linked oxidase-like YP_003138480.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpc:RPC_4216 short-chain dehydrogenase/reductase SDR YP_003138481.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003138482.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: abu:Abu_2184 hypothetical protein YP_003138483.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce6515 hypothetical protein YP_003138484.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: scl:sce4581 hydrogenase expression/formation protein HypE YP_003138485.1 KEGG: smt:Smal_1885 RNA polymerase, sigma 54 subunit, RpoN YP_003138486.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: eta:ETA_09780 heat shock protein YP_003138487.1 PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: hypothetical protein YP_003138488.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: vfm:VFMJ11_2246 two-component sensor histidine kinase YP_003138490.1 PFAM: regulatory protein TetR; KEGG: pfo:Pfl01_2737 TetR family transcriptional regulator YP_003138491.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bra:BRADO6192 acetyltransferase YP_003138492.1 PFAM: dienelactone hydrolase; BAAT/acyl-CoA thioester hydrolase; KEGG: mxa:MXAN_7109 dienelactone hydrolase family protein YP_003138493.1 KEGG: hypothetical protein YP_003138495.1 KEGG: neu:NE1444 hypotheticalprotein YP_003138496.1 KEGG: pin:Ping_1785 SOUL heme-binding protein YP_003138497.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: asa:ASA_1614 peptidyl-prolyl cis-trans isomerase B YP_003138498.1 KEGG: sfu:Sfum_3124 hypothetical protein YP_003138499.1 PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; KEGG: pat:Patl_0924 DNA/RNA non-specific endonuclease YP_003138500.1 KEGG: glo:Glov_1945 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein YP_003138501.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: wsu:WS0975 hybrid histidine kinase YP_003138502.1 KEGG: bur:Bcep18194_A4806 cobaltochelatase; TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase YP_003138503.1 PFAM: pentapeptide repeat protein; KEGG: gur:Gura_0761 pentapeptide repeat-containing protein YP_003138507.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_1506 hypothetical protein YP_003138508.1 TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: rpe:RPE_4194 protein of unknown function DUF891 YP_003138509.1 TIGRFAM: addiction module antidote protein; KEGG: noc:Noc_0449 hypothetical protein YP_003138510.1 TIGRFAM: phosphate binding protein; KEGG: gsu:GSU1099 phosphate ABC transporter periplasmic phosphate-binding protein YP_003138512.1 TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pfs:PFLU3318 phosphate-binding periplasmic protein YP_003138513.1 KEGG: hypothetical protein LOC687636 YP_003138514.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppg:PputGB1_3146 phosphate ABC transporter inner membrane subunit PstC YP_003138515.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppg:PputGB1_3145 phosphate ABC transporter inner membrane subunit PstA YP_003138516.1 KEGG: pfs:PFLU3315 ABC transporter ATP-binding protein; TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003138517.1 KEGG: sat:SYN_00059 ABC-type phosphate transport system, ATPase component; TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003138518.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_003138519.1 PFAM: serine/threonine protein kinase-related; TPR repeat-containing protein; tyrosine protein kinase; Tetratricopeptide TPR_2 repeat protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; hypothetical protein; KEGG: scl:sce7353 protein kinase YP_003138520.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_003138521.1 PFAM: NERD domain protein; KEGG: pag:PLES_23561 hypothetical protein YP_003138522.1 KEGG: hypothetical protein YP_003138523.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: hypothetical protein YP_003138524.1 PFAM: alpha/beta hydrolase fold protein; KEGG: hypothetical protein YP_003138525.1 KEGG: nmu:Nmul_A1900 cyanophycinase-like protein YP_003138527.1 PFAM: protein of unknown function DUF1349; KEGG: mmw:Mmwyl1_4025 hypothetical protein YP_003138528.1 KEGG: geo:Geob_1869 organic solvent tolerance protein YP_003138529.1 4.8-kDa protein; may be involved in assembling and stabilizing of PSII dimers YP_003138531.1 KEGG: reh:H16_A2685 parvulin-like peptidyl-prolyl isomerase YP_003138538.1 PFAM: hypothetical protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_04187 hypothetical protein YP_003138539.1 PFAM: glycosyl transferase family 2; TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; Sel1 domain protein repeat-containing protein; KEGG: rsp:RSP_4080 TPR repeat-containing SPINDLY family protein YP_003138541.1 PFAM: secretion protein HlyD family protein; KEGG: plu:plu0635 hypothetical protein YP_003138542.1 KEGG: eba:ebA1666 fusion of ABC transporter-type transmembrane and ATP binding protein; TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: ATPase AAA YP_003138543.1 KEGG: pmy:Pmen_1396 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein YP_003138544.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_2673 MotA/TolQ/ExbB proton channel YP_003138545.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: cps:CPS_3753 biopolymer transport ExbD protein YP_003138546.1 KEGG: similar to viral A-type inclusion protein YP_003138547.1 KEGG: hypothetical protein YP_003138548.1 PFAM: protein of unknown function DUF820 YP_003138549.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_003138550.1 KEGG: ppd:Ppro_2103 glycosyl transferase, group 1 YP_003138551.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: mno:Mnod_4318 glycosyl transferase group 1 YP_003138552.1 TIGRFAM: methyltransferase FkbM family; KEGG: noc:Noc_0747 methyltransferase FkbM YP_003138553.1 KEGG: ftm:FTM_0862 hypothetical membrane protein YP_003138554.1 PFAM: glycosyl transferase family 39; KEGG: gur:Gura_0502 glycosyl transferase family protein YP_003138556.1 PFAM: heat shock protein DnaJ SMART: heat shock protein DnaJ KEGG: hypothetical protein YP_003138557.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_003138558.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_003138559.1 carries the fatty acid chain in fatty acid biosynthesis YP_003138560.1 KEGG: dal:Dalk_4980 hypothetical protein YP_003138561.1 PFAM: protein of unknown function DUF433; KEGG: rpt:Rpal_3160 protein of unknown function DUF433 YP_003138562.1 KEGG: tgr:Tgr7_2091 hypothetical protein YP_003138565.1 PFAM: YcfA family protein; KEGG: bpa:BPP3141 hypothetical protein YP_003138566.1 PFAM: protein of unknown function UPF0150; KEGG: sit:TM1040_1684 hypothetical protein YP_003138567.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_003138568.1 KEGG: bra:BRADO1241 hypothetical protein YP_003138570.1 PFAM: transposase family protein; KEGG: noc:Noc_1615 transposase YP_003138573.1 KEGG: gme:Gmet_1321 hypothetical protein YP_003138574.1 PFAM: beta-lactamase domain protein; KEGG: hypothetical protein YP_003138576.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: dol:Dole_2292 sodium/hydrogen exchanger YP_003138577.1 PFAM: glycosyl transferase family 39; KEGG: gme:Gmet_0887 glycosyl transferase family protein YP_003138578.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit beta is part of the catalytic core of the ATP synthase complex YP_003138579.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_003138580.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: gur:Gura_0418 H(+)-transporting two-sector ATPase YP_003138581.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_003138582.1 KEGG: gene 11-1 protein precursor YP_003138584.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_1501 transposase YP_003138585.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_5253 GCN5-related N-acetyltransferase YP_003138586.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit alpha is part of the catalytic core of the ATP synthase complex YP_003138587.1 TIGRFAM: photosystem q(b) protein; PFAM: photosynthetic reaction centre protein; KEGG: psbA; photosystem II protein D1; K02703 photosystem II PsbA protein YP_003138588.1 PFAM: protein of unknown function UPF0057; KEGG: sdn:Sden_0810 hypothetical protein YP_003138589.1 PFAM: Heavy metal transport/detoxification protein; KEGG: bpr:GBP346_A0228 heavy-metal-associated domain protein YP_003138590.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: msl:Msil_3763 nickel-dependent hydrogenase large subunit YP_003138591.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: msl:Msil_3764 NADH ubiquinone oxidoreductase 20 kDa subunit YP_003138592.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003138593.1 KEGG: cja:CJA_3780 hypothetical protein YP_003138594.1 KEGG: lpc:LPC_1685 hypothetical protein YP_003138595.1 PFAM: nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; transferase hexapeptide repeat containing protein; KEGG: gbm:Gbem_3402 nucleotidyl transferase YP_003138596.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: fph:Fphi_0702 single-strand DNA binding protein YP_003138597.1 photosystem I subunit PsaK; maybe involved in the assembly of PSI monomers into trimers; active under low light conditions YP_003138598.1 PFAM: extracellular ligand-binding receptor; KEGG: csa:Csal_1418 extracellular ligand-binding receptor YP_003138599.1 PFAM: protein of unknown function DUF29; KEGG: mch:Mchl_3241 protein of unknown function DUF29 YP_003138600.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003138601.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: lpp:lpp3005 fumarate hydratase YP_003138602.1 KEGG: dal:Dalk_4793 hypothetical protein YP_003138603.1 KEGG: nis:NIS_1676 hypothetical protein YP_003138605.1 PFAM: protein of unknown function DUF552 YP_003138607.1 TIGRFAM: photosystem II protein Psb27; KEGG: 11 kDa protein of photosystem II, psbZ; K08902 photosystem II Psb27 protein YP_003138609.1 KEGG: net:Neut_1851 hypothetical protein YP_003138610.1 PFAM: dienelactone hydrolase; KEGG: lch:Lcho_0092 carboxymethylenebutenolidase YP_003138611.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_003138612.1 PFAM: SirA family protein; KEGG: gme:Gmet_1571 hypothetical protein YP_003138613.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_003138615.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003138617.1 KEGG: scl:sce6765 hypothetical protein YP_003138618.1 KEGG: cbc:CbuK_0395 hypothetical membrane spanning protein YP_003138621.1 PFAM: methyltransferase type 11; KEGG: hypothetical protein YP_003138622.1 PFAM: glutamine amidotransferase class-II; KEGG: tgr:Tgr7_2474 hypothetical protein YP_003138623.1 PFAM: protein of unknown function DUF323; KEGG: mxa:MXAN_7471 hypothetical protein YP_003138624.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; KEGG: noc:Noc_2686 transposase YP_003138625.1 PFAM: PspA/IM30 family protein; KEGG: hypothetical protein; K03969 phage shock protein A YP_003138626.1 KEGG: predicted protein YP_003138627.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: net:Neut_1661 ABC transporter-related protein YP_003138629.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_1501 transposase YP_003138630.1 KEGG: ppw:PputW619_4057 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_003138631.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003138632.1 PFAM: glycosyl transferase family 2; KEGG: sme:SM_b20391 cellulose synthase catalytic subunit protein YP_003138633.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: cps:CPS_2675 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_003138634.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pzu:PHZ_c2848 short-chain dehydrogenase/reductase SDR YP_003138635.1 PFAM: carbonic anhydrase; KEGG: rpb:RPB_4625 carbonate dehydratase YP_003138636.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003138637.1 KEGG: hypothetical protein; K11808 phosphoribosylaminoimidazole carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_003138638.1 KEGG: hypothetical protein YP_003138639.1 KEGG: hypothetical protein YP_003138640.1 PFAM: hypotheticalprotein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dal:Dalk_5269 hypotheticalprotein YP_003138641.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_003138642.1 PFAM: GUN4 domain protein; KEGG: ORF155 YP_003138643.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mxa:MXAN_7239 HAE1 family efflux transporter MFP subunit YP_003138645.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: hypothetical protein YP_003138646.1 KEGG: mrd:Mrad2831_2846 hypothetical protein YP_003138647.1 involved in start site selection during the initiation of translation YP_003138648.1 PFAM: glycoside hydrolase family 57; KEGG: glo:Glov_0408 glycoside hydrolase family 57 YP_003138654.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sbl:Sbal_4434 prevent-host-death family protein YP_003138655.1 KEGG: swp:swp_2682 glucan 1,4-alpha-glucosidase; TIGRFAM: glucan 1,4-alpha-glucosidase; PFAM: glucodextranase N; glycoside hydrolase 15-related YP_003138656.1 PFAM: major royal jelly protein; KEGG: sfr:Sfri_2814 hypothetical protein YP_003138657.1 PFAM: ThiJ/PfpI domain protein; KEGG: ppw:PputW619_2068 ThiJ/PfpI domain-containing protein YP_003138658.1 KEGG: hypothetical protein YP_003138659.1 PFAM: Domain of unknown function DUF1929; KEGG: scl:sce4871 hypothetical protein YP_003138660.1 PFAM: xylose isomerase; KEGG: rec:RHECIAT_PC0000670 xylose isomerase domain protein YP_003138662.1 KEGG: bur:Bcep18194_C7237 hypothetical protein YP_003138663.1 PFAM: xylose isomerase; KEGG: smd:Smed_5989 xylose isomerase domain-containing protein YP_003138664.1 KEGG: rec:RHECIAT_PC0000666 dehydrogenase protein YP_003138665.1 KEGG: rec:RHECIAT_PC0000667 hypothetical protein YP_003138666.1 KEGG: smd:Smed_5988 hypothetical protein YP_003138667.1 PFAM: pentapeptide repeat protein; KEGG: tbd:Tbd_0916 hypothetical protein YP_003138668.1 KEGG: hch:HCH_05472 hypothetical protein YP_003138669.1 PFAM: aldo/keto reductase; KEGG: rhi:NGR_b07520 aldo-keto reductase protein YP_003138670.1 PFAM: GUN4 domain protein; KEGG: predicted protein YP_003138671.1 PFAM: pentapeptide repeat protein; KEGG: sat:SYN_00349 pentapeptide repeat-containing protein YP_003138672.1 PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_2181 antibiotic transporter YP_003138673.1 KEGG: gme:Gmet_2694 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein YP_003138675.1 PFAM: DRTGG domain protein; KEGG: dvl:Dvul_1641 DRTGG domain-containing protein YP_003138676.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tgr:Tgr7_1070 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003138677.1 KEGG: pca:Pcar_0922 hypothetical protein YP_003138678.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_003138680.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_003138681.1 PFAM: L-asparaginase II; KEGG: eba:ebA4634 L-asparaginase II YP_003138682.1 PFAM: protein of unknown function DUF1230; KEGG: Os03g0439700; hypothetical protein YP_003138683.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sfu:Sfum_3646 iojap-like protein YP_003138684.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003138685.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pca:Pcar_0366 ABC-type transport system, ATPase component PhnL YP_003138686.1 PFAM: ABC transporter; KEGG: predicted protein YP_003138688.1 PFAM: histidine triad (HIT) protein; KEGG: expressed hypothetical protein YP_003138689.1 KEGG: hypothetical protein YP_003138690.1 TIGRFAM: exonuclease SbcC; PFAM: SMC domain protein; KEGG: hypothetical protein YP_003138692.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_003138693.1 PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; KEGG: ppd:Ppro_3293 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_003138694.1 PFAM: cytochrome P450; KEGG: hypothetical protein YP_003138695.1 PFAM: Lipoxygenase; KEGG: pau:PA14_49300 lipoxygenase YP_003138696.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mxa:MXAN_3043 cation efflux family protein YP_003138697.1 KEGG: hypothetical protein YP_003138701.1 catalyzes the formation of precorrin-3 from precorrin-2 YP_003138702.1 PFAM: photosystem II protein PsbY YP_003138703.1 KEGG: reu:Reut_C6221 hexapaptide repeat-containing transferase YP_003138705.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kpn:KPN_01697 glyoxalase/bleomycin resistance protein/dioxygenas YP_003138706.1 PFAM: acriflavin resistance protein; KEGG: geo:Geob_0948 acriflavin resistance protein YP_003138709.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hypothetical protein YP_003138710.1 PFAM: alpha/beta hydrolase fold protein; KEGG: spl:Spea_3972 alpha/beta hydrolase fold protein YP_003138711.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_003138712.1 PFAM: photosystem I assembly BtpA; KEGG: mlo:mll7660 hypothetical protein YP_003138713.1 KEGG: pmy:Pmen_1048 signal transduction protein YP_003138714.1 PFAM: protein of unknown function DUF497; KEGG: pen:PSEEN3950 hypothetical protein YP_003138715.1 KEGG: gur:Gura_1489 hypothetical protein YP_003138717.1 PFAM: protein of unknown function UPF0118; KEGG: nha:Nham_0862 hypothetical protein YP_003138718.1 KEGG: noc:Noc_1740 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003138719.1 PFAM: protein of unknown function DUF990; KEGG: mxa:MXAN_6002 ABC transporter permease protein YP_003138720.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: glo:Glov_0765 oxidoreductase domain protein YP_003138721.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis along with cofG YP_003138722.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: phycocyanobilin lyase subunit alpha; K02288 phycocyanobilin lyase alpha subunit YP_003138723.1 PFAM: CpcD phycobilisome linker domain protein YP_003138724.1 PFAM: phycobilisome linker polypeptide; CpcD phycobilisome linker domain protein; KEGG: phycocyanin-associated rod linker protein; K02286 phycocyanin-associated rod linker protein YP_003138725.1 PFAM: phycobilisome linker polypeptide; CpcD phycobilisome linker domain protein; KEGG: phycocyanin-associated rod linker protein; K02286 phycocyanin-associated rod linker protein YP_003138726.1 TIGRFAM: phycocyanin, subunit alpha; PFAM: phycobilisome protein; KEGG: phycocyanin (PC) alpha chain YP_003138727.1 TIGRFAM: phycocyanin, subunit beta; PFAM: phycobilisome protein; KEGG: phycocyanin (PC) beta chain YP_003138728.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: phycocyanobilin lyase beta subuni; K02289 phycocyanobilin lyase subunit beta YP_003138729.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_003138730.1 PFAM: ATP-cone domain protein; KEGG: mxa:MXAN_4765 transcriptional regulator NrdR YP_003138731.1 Ycf8; may be involved in the formation and/or stabilization of PSII system complexes YP_003138732.1 TIGRFAM: photosystem II chlorophyll-binding protein CP47; PFAM: photosystem antenna family protein; KEGG: photosystem II p680 chlorophyll A apoprotein (CP-47); K02704 photosystem II PsbB protein YP_003138733.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: tbd:Tbd_0524 hypothetical protein YP_003138734.1 PFAM: cell wall hydrolase/autolysin; protein of unknown function DUF1058; SMART: cell wall hydrolase/autolysin; SH3 domain protein; KEGG: cla:Cla_0620 N-acetylmuramoyl-L-alanine amidase YP_003138735.1 PFAM: alpha/beta hydrolase fold protein; KEGG: hypothetical protein YP_003138736.1 PFAM: XisH protein YP_003138737.1 KEGG: avn:Avin_17420 hypothetical protein YP_003138739.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_003138740.1 SMART: phospholipid/glycerol acyltransferase YP_003138741.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; the sigma factors in this cluster are not essential for growth or development; however they may be involved in the expression of nitrogen fixation genes and in dark/light adaption YP_003138742.1 KEGG: hypothetical protein YP_003138743.1 KEGG: dat:HRM2_46670 MutY; TIGRFAM: A/G-specific adenine glycosylase; mutator MutT protein; PFAM: NUDIX hydrolase; HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein YP_003138745.1 PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; KEGG: aeh:Mlg_1727 peptidase M14, carboxypeptidase A YP_003138747.1 KEGG: hypothetical protein YP_003138749.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: pca:Pcar_3082 two component sensor histidine kinase YP_003138750.1 KEGG: noc:Noc_1628 hypothetical protein YP_003138751.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: GRHPR; glyoxylate reductase/hydroxypyruvate reductase YP_003138752.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: similar to dehydrogenase/reductase (SDR family) member 1 YP_003138753.1 PFAM: hypothetical protein; KEGG: csa:Csal_2373 abortive infection protein YP_003138755.1 KEGG: hypothetical protein YP_003138756.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: tgr:Tgr7_2984 2-hydroxy-3-oxopropionate reductase YP_003138757.1 PFAM: protein of unknown function DUF1499; KEGG: dps:DP1404 hypothetical protein YP_003138758.1 PFAM: protein of unknown function DUF82; KEGG: acp:A2cp1_3352 protein of unknown function DUF82 YP_003138760.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: neu:NE0549 TonB-dependent receptor protein YP_003138761.1 PFAM: periplasmic binding protein; KEGG: pmu:PM0131 iron-dicitrate transporter substrate-binding subunit YP_003138762.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: hch:HCH_03458 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase components YP_003138763.1 PFAM: transport system permease protein; KEGG: hch:HCH_03457 ABC-type enterobactin transport system, permease component YP_003138764.1 PFAM: transport system permease protein; KEGG: mmw:Mmwyl1_0464 transport system permease protein YP_003138765.1 PFAM: MORN repeat-containing protein; SMART: MORN repeat-containing protein; KEGG: hypothetical protein YP_003138766.1 TIGRFAM: TonB family protein; KEGG: hypothetical protein YP_003138767.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_003138768.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: mxa:MXAN_4598 non-ribosomal peptide synthase YP_003138769.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; taurine catabolism dioxygenase TauD/TfdA; phosphopantetheine-binding; condensation domain protein; KEGG: scl:sce8256 non-ribosomal peptide synthetase YP_003138770.1 TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_4598 non-ribosomal peptide synthase YP_003138771.1 PFAM: taurine catabolism dioxygenase TauD/TfdA; KEGG: scl:sce8258 SyrP protein YP_003138772.1 TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: avn:Avin_25570 non-ribosomal peptide synthase, PvdD/PvdJ-like protein YP_003138773.1 TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: scl:sce8257 non-ribosomal peptide synthetase YP_003138774.1 PFAM: beta-ketoacyl synthase; acyl transferase; phosphopantetheine-binding; KEGG: mxa:MXAN_3621 polyketide synthase type I YP_003138775.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; Non-ribosomal peptide synthetase; condensation domain protein; KEGG: mxa:MXAN_4299 non-ribosomal peptide synthase/polyketide synthase YP_003138776.1 PFAM: acyl transferase; beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: mxa:MXAN_4292 polyketide synthase YP_003138777.1 PFAM: KR domain protein; acyl transferase; beta-ketoacyl synthase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: mxa:MXAN_4527 polyketide synthase YP_003138778.1 PFAM: acyl transferase; beta-ketoacyl synthase; phosphopantetheine-binding; KEGG: mxa:MXAN_4292 polyketide synthase YP_003138779.1 PFAM: beta-ketoacyl synthase; KEGG: mxa:MXAN_4402 non-ribosomal peptide synthetase YP_003138780.1 PFAM: phosphopantetheine-binding; KEGG: pol:Bpro_5327 phosphopantetheine-binding YP_003138781.1 PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_4533 major facilitator family transporter YP_003138782.1 PFAM: Thioesterase; KEGG: scl:sce0356 thioesterase YP_003138783.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dat:HRM2_00070 TolQ3 YP_003138784.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: aha:AHA_4249 biopolymer transport exbD2 protein YP_003138785.1 KEGG: bph:Bphy_5441 hypothetical protein YP_003138786.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: vsp:VS_1599 hypothetical protein YP_003138787.1 KEGG: wsu:WS0003 7-cyano-7-deazaguanine reductase; TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I YP_003138788.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_003138789.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: bcj:BCAL0179 hypothetical protein YP_003138790.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: scl:sce3990 isovaleryl-CoA dehydrogenase protein YP_003138791.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_003138792.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: nmu:Nmul_A0037 ATPase, E1-E2 type YP_003138793.1 KEGG: mca:MCA1086 hypothetical protein YP_003138794.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bav:BAV1578 C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter permease component YP_003138795.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: oan:Oant_0444 tripartite ATP-independent periplasmic transporter DctQ component YP_003138796.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: tbd:Tbd_2164 transporter periplasmic component YP_003138797.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_003138799.1 KEGG: afw:Anae109_4225 MerR family transcriptional regulator YP_003138800.1 KEGG: hip:CGSHiEE_01420 nucleic acid-binding protein YP_003138802.1 KEGG: pmy:Pmen_1048 signal transduction protein YP_003138803.1 KEGG: abm:ABSDF3330 ATP-binding YP_003138804.1 PFAM: transposase-like Mu; Integrase catalytic region; KEGG: msu:MS2016 hypothetical protein YP_003138806.1 PFAM: PilT protein domain protein; KEGG: neu:NE2174 hypothetical protein YP_003138807.1 PFAM: restriction modification system DNA specificity domain; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant YP_003138808.1 PFAM: PilT protein domain protein; SMART: nucleotide binding protein PINc; KEGG: tmz:Tmz1t_1065 PilT protein domain protein YP_003138810.1 PFAM: DNA polymerase beta domain protein region; KEGG: gme:Gmet_0479 DNA polymerase, beta-like region YP_003138811.1 PFAM: protein of unknown function DUF86; KEGG: gme:Gmet_0480 hypothetical protein YP_003138812.1 TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: mch:Mchl_2982 MazE family transcriptional regulator YP_003138813.1 TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: rpe:RPE_4100 death-on-curing family protein YP_003138814.1 PFAM: protein of unknown function UPF0175; KEGG: hch:HCH_03117 hypothetical protein YP_003138815.1 PFAM: DNA polymerase beta domain protein region; KEGG: hap:HAPS_1902 DNA polymerase beta-like protein YP_003138816.1 PFAM: protein of unknown function DUF86; KEGG: eba:ebB137 hypothetical protein YP_003138817.1 KEGG: aeh:Mlg_0504 HsdR family type I site-specific deoxyribonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase YP_003138818.1 PFAM: protein of unknown function DUF45; KEGG: sat:SYN_02061 zinc metalloprotease YP_003138819.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: mfa:Mfla_1107 tRNA/rRNA methyltransferase (SpoU) YP_003138820.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_003138821.1 PFAM: Rare lipoprotein A; KEGG: sfr:Sfri_0060 rare lipoprotein A YP_003138822.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: mno:Mnod_7349 peptidase C14 caspase catalytic subunit P20 YP_003138823.1 PFAM: acylphosphatase; KEGG: hypothetical protein; K01512 acylphosphatase YP_003138824.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce2144 hypothetical protein YP_003138825.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sun:SUN_1202 succinate dehydrogenase/fumarate reductase, subunit C YP_003138826.1 PFAM: protein of unknown function DUF29; KEGG: mca:MCA0580 hypothetical protein YP_003138827.1 PFAM: YcfA family protein; KEGG: rpb:RPB_4579 YcfA-like YP_003138828.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_2743 hypothetical protein YP_003138830.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_003138831.1 PFAM: pentapeptide repeat protein; KEGG: mms:mma_2224 pentapeptide repeat-containing protein YP_003138832.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: hha:Hhal_1863 sodium/hydrogen exchanger YP_003138833.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: pcr:Pcryo_1653 histone-like DNA-binding protein YP_003138834.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: tau:Tola_1705 L-threonine-O-3-phosphate decarboxylase YP_003138835.1 PFAM: FG-GAP repeat protein; KEGG: tbd:Tbd_1355 hypothetical protein YP_003138836.1 KEGG: dde:Dde_3758 hypothetical protein YP_003138837.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; methyltransferase type 11; methyltransferase type 12; KEGG: pae:PA1390 glycosyl transferase YP_003138838.1 PFAM: glycosyl transferase group 1; KEGG: ypy:YPK_3184 glycosyl transferase group 1 YP_003138839.1 PFAM: heat shock protein DnaJ KEGG: xop:PXO_01879 DnaJ domain protein YP_003138840.1 PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase; KEGG: hypothetical protein YP_003138841.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7168 hypothetical protein YP_003138842.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: gme:Gmet_0366 hypothetical protein YP_003138843.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase YP_003138844.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_003138845.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_003138846.1 KEGG: pnu:Pnuc_0934 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_003138847.1 binds and unfolds substrates as part of the ClpXP protease YP_003138848.1 PFAM: alpha/beta hydrolase fold protein; KEGG: pmy:Pmen_2705 alpha/beta hydrolase fold protein YP_003138849.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: GK21951 gene product from transcript GK21951-RA YP_003138850.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: flot1; flotillin 1; K07192 flotillin YP_003138852.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: hypothetical protein; K02493 HemK protein YP_003138853.1 PFAM: Tic22 family proein; KEGG: hypothetical protein YP_003138854.1 PFAM: Tic22 family proein; KEGG: similar to chloroplast inner membrane protein Tic22 YP_003138855.1 KEGG: gur:Gura_4031 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase YP_003138856.1 PFAM: pseudouridine synthase; KEGG: vvu:VV2_1318 pseudouridylate synthase, 23S RNA-specific YP_003138857.1 PFAM: K channel inward rectifier conserved region 2 domain protein; ion transport 2 domain protein; KEGG: bxe:Bxe_A4289 inward rectifier potassium channel YP_003138858.1 KEGG: hypothetical protein YP_003138859.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: glo:Glov_2362 peptidylprolyl isomerase FKBP-type YP_003138860.1 KEGG: dol:Dole_0646 hypothetical protein YP_003138861.1 SMART: Mov34/MPN/PAD-1 family protein; KEGG: kpe:KPK_1753 hypothetical protein YP_003138862.1 PFAM: HicB family protein; KEGG: rbe:RBE_1327 HicB-like protein YP_003138863.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; KEGG: hypothetical protein; K03292 glycoside/pentoside/hexuronide:cation symporter, GPH family YP_003138864.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; rhodanese domainprotein; SMART: Rhodanese domain protein; KEGG: ade:Adeh_3493 UBA/ThiF-type NAD/FAD binding, MoeZ/MoeB fmaily protein YP_003138866.1 PFAM: protein of unknown function DUF901; KEGG: hypothetical protein; K06962 YP_003138867.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ATNAP13 (EMBRYO DEFECTIVE 2751) YP_003138868.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_003138869.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_003138870.1 PFAM: aldo/keto reductase; KEGG: hypothetical protein YP_003138871.1 KEGG: pst:PSPTO_0931 hypothetical protein YP_003138872.1 KEGG: mno:Mnod_8602 hypothetical protein YP_003138873.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: hha:Hhal_2276 NAD(P) transhydrogenase subunit alpha YP_003138874.1 KEGG: abo:ABO_1328 oxidoreductase YP_003138875.1 PFAM: NAD(P) transhydrogenase subunit beta; KEGG: abo:ABO_1327 pyridine nucleotide transhydrogenase, subunit beta YP_003138876.1 PFAM: malic protein NAD-binding; amino acid-binding ACT domain protein; malic protein domain protein; KEGG: sat:SYN_00517 NAD-dependent malic enzyme YP_003138877.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_003138878.1 KEGG: hypothetical protein YP_003138880.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2281 response regulator receiver protein YP_003138881.1 KEGG: pla:Plav_0632 hypothetical protein YP_003138882.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hch:HCH_03071 phosphatase YP_003138883.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: noc:Noc_0340 4Fe-4S cluster binding protein YP_003138884.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_003138885.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_003138886.1 PFAM: transketolase; transketolase domain protein; KEGG: pyruvate dehydrogenase E1 component subunit beta YP_003138887.1 PFAM: NACHT nucleoside triphosphatase; KEGG: pmy:Pmen_1048 signal transduction protein YP_003138890.1 PFAM: protein of unknown function DUF820; KEGG: mxa:MXAN_0519 hypothetical protein YP_003138891.1 KEGG: noc:Noc_0983 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003138892.1 KEGG: serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003138893.1 KEGG: Os12g0596000; hypothetical protein; K03801 lipoyl(octanoyl) transferase; TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase YP_003138894.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: hypothetical protein YP_003138895.1 PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pna:Pnap_2764 IS605 family transposase OrfB YP_003138897.1 PFAM: phosphatidate cytidylyltransferase; KEGG: hypothetical protein YP_003138899.1 KEGG: tgr:Tgr7_1784 hypothetical protein YP_003138900.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_003138901.1 PFAM: helix-hairpin-helix motif; phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; DNA-binding protein; KEGG: sdn:Sden_1075 phospholipase D/transphosphatidylase YP_003138902.1 PFAM: cobalt transport protein; KEGG: ppabci12; ATP-binding cassette transporter subfamily I, member 12, ABC component protein PpABCI12 YP_003138903.1 This is a divergent form of trpE. It is not obvious if it is active in Trp biosynthesis. Component I catalyzes the formation of anthranilate using ammonia rather than glutamine, whereas component II provides glutamine amidotransferase activity YP_003138904.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gsu:GSU1723 mechanosensitive ion channel family protein YP_003138905.1 KEGG: ara:Arad_9224 undecaprenol kinase; TIGRFAM: undecaprenol kinase; PFAM: bacitracin resistance protein BacA YP_003138906.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class-III; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tgr:Tgr7_1173 glutamine--scyllo-inositol transaminase YP_003138907.1 PFAM: heat shock protein DnaJ KEGG: mlo:mll4676 contains weak similarity to thioredoxin reductase YP_003138908.1 TIGRFAM: photosystem II reaction center protein PsbM; PFAM: photosystem II protein PsbM; KEGG: psbM; PSII M-protein; K02714 photosystem II PsbM protein YP_003138909.1 PFAM: ferredoxin; KEGG: unknown YP_003138910.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dar:Daro_0025 peptidase C56, PfpI YP_003138911.1 KEGG: dal:Dalk_3051 ATPase-like protein YP_003138913.1 KEGG: similar to LOC558785 protein YP_003138914.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_003138915.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_003138916.1 PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pna:Pnap_2764 IS605 family transposase OrfB YP_003138917.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_003138920.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: glo:Glov_2544 RNA binding S1 domain protein YP_003138921.1 KEGG: mca:MCA1149 hypothetical protein YP_003138922.1 TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM protein; KEGG: afw:Anae109_4083 radical SAM domain-containing protein YP_003138923.1 KEGG: hypothetical protein; TIGRFAM: photosystem II S4 domain protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003138925.1 KEGG: ppd:Ppro_1272 hypothetical protein YP_003138926.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mxa:MXAN_7239 HAE1 family efflux transporter MFP subunit YP_003138927.1 KEGG: gbm:Gbem_3360 squalene-hopene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: prenyltransferase/squalene oxidase YP_003138928.1 PFAM: conserved hypothetical protein; KEGG: sun:SUN_1999 hypothetical protein YP_003138930.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_003138934.1 KEGG: rpt:Rpal_3227 hypothetical protein YP_003138935.1 PFAM: protein of unknown function DUF497; KEGG: bbr:BB2141 hypothetical protein YP_003138936.1 KEGG: dol:Dole_1898 hypothetical protein YP_003138937.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_003138938.1 PFAM: DNA polymerase beta domain protein region YP_003138939.1 KEGG: gur:Gura_3172 hypothetical protein YP_003138942.1 PFAM: hypothetical protein; KEGG: scl:sce3368 hypothetical protein YP_003138943.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: DD-carboxypeptidase YP_003138944.1 PFAM: protein of unknown function DUF205; KEGG: rlt:Rleg2_1778 protein of unknown function DUF205 YP_003138945.1 KEGG: TPR; translocated promoter region (to activated MET oncogene); K09291 nucleoprotein TPR YP_003138946.1 KEGG: hypothetical protein YP_003138947.1 PFAM: glycosyl transferase group 1; KEGG: mch:Mchl_1395 glycosyl transferase group 1 YP_003138948.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: asa:ASA_2230 S-adenosylmethionine-dependentmethyltransferase YP_003138949.1 TIGRFAM: methyltransferase FkbM family; KEGG: hypothetical protein YP_003138950.1 KEGG: abu:Abu_1613 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein YP_003138951.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: vcm:VCM66_A0278 transcriptional regulator, HTH_3 family YP_003138952.1 KEGG: avn:Avin_17420 hypothetical protein YP_003138953.1 PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ SMART: heat shock protein DnaJ KEGG: dvu:DVU1876 DnaJ protein YP_003138954.1 PFAM: protein of unknown function DUF820; KEGG: bph:Bphy_6321 hypothetical protein YP_003138955.1 PFAM: peptidase M50; KEGG: afw:Anae109_4470 peptidase M50 YP_003138956.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; HNH endonuclease; SMART: HNH nuclease; KEGG: shm:Shewmr7_0556 RNA-directed DNA polymerase YP_003138957.1 KEGG: hypothetical protein YP_003138959.1 PFAM: citrate transporter; Arsenical pump membrane protein; KEGG: sfu:Sfum_2052 citrate transporter YP_003138960.1 PFAM: UvrD/REP helicase; KEGG: bba:Bd3339 ATP-dependent DNA helicase YP_003138961.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein YP_003138962.1 KEGG: maq:Maqu_0678 hypothetical protein YP_003138963.1 KEGG: sfu:Sfum_1671 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_003138964.1 PFAM: RimK domain protein ATP-grasp; KEGG: dol:Dole_0111 RimK domain-containing protein ATP-grasp YP_003138965.1 PFAM: fatty acid desaturase; KEGG: hypothetical protein; K10255 omega-6 fatty acid desaturase (delta-12 desaturase) YP_003138966.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: gur:Gura_2323 CRP/FNR family transcriptional regulator YP_003138967.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: ade:Adeh_3288 peptidase M61 YP_003138968.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_003138969.1 KEGG: bpy:Bphyt_6669 hypothetical protein YP_003138970.1 KEGG: ecw:EcE24377A_0989 hypothetical protein YP_003138971.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_003138973.1 PFAM: protein of unknown function DUF815; KEGG: abo:ABO_0011 hypothetical protein YP_003138974.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_003138975.1 PFAM: TrkA-N domain protein; KEGG: mxa:MXAN_5903 TrkA family protein YP_003138976.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: tdn:Suden_1565 DNA (cytosine-5-)-methyltransferase YP_003138977.1 KEGG: bpy:Bphyt_4695 protein of unknown function DUF1130 YP_003138979.1 PFAM: phosphoglycerate mutase; KEGG: rpd:RPD_0651 phosphoglycerate mutase YP_003138980.1 PFAM: phosphoglycerate mutase; KEGG: rpd:RPD_0651 phosphoglycerate mutase YP_003138981.1 PFAM: CpcD phycobilisome linker domain protein; KEGG: phycocyanin-associated rod linker protein, fragment; K02286 phycocyanin-associated rod linker protein YP_003138982.1 TIGRFAM: allophycocyanin, subunit beta; PFAM: phycobilisome protein; KEGG: allophycocyanin (APC) beta chain YP_003138983.1 PFAM: phycobilisome protein; KEGG: allophycocyanin (APC) alpha chain YP_003138984.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: net:Neut_2039 phosphotransferase domain-containing protein YP_003138985.1 KEGG: similar to Splicing factor, arginine/serine-rich 4 YP_003138987.1 PFAM: sugar transferase; KEGG: eca:ECA1420 undecaprenyl-phosphate galactosephosphotransferase YP_003138988.1 PFAM: glycosyl transferase group 1; KEGG: see:SNSL254_A2264 glycosyl transferase, group 1 YP_003138990.1 TIGRFAM: ferredoxin [2Fe-2S]; PFAM: ferredoxin; KEGG: hypothetical protein; K02639 ferredoxin YP_003138991.1 PFAM: KaiB domain protein; KEGG: bbt:BBta_6553 circadian clock protein YP_003138992.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dno:DNO_0675 twitching motility protein PilT YP_003138997.1 PFAM: transposase IS4 family protein; KEGG: hypothetical protein YP_003138998.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: sfu:Sfum_3720 biotin--acetyl-CoA-carboxylase ligase YP_003138999.1 PFAM: protein of unknown function DUF152; KEGG: scl:sce0037 hypothetical protein YP_003139000.1 PFAM: ABC transporter; KEGG: pca:Pcar_2342 ubiquinone biosynthesis protein AarF YP_003139001.1 PFAM: nucleotidyl transferase; KEGG: sat:SYN_01031 mannose-1-phosphate guanylyltransferase YP_003139002.1 required for 70S ribosome assembly YP_003139003.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: vvy:VV2044 sodium/alanine symporter YP_003139004.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_003139005.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_003139008.1 KEGG: swd:Swoo_3950 monovalent cation/proton antiporter, MnhG/PhaG subunit YP_003139009.1 KEGG: rrj:RrIowa_0427 monovalent cation/H+ antiporter subunit B YP_003139010.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_003139011.1 KEGG: pla:Plav_2122 beta-propeller repeat-containing to-pal system protein TolB YP_003139012.1 KEGG: mca:MCA1149 hypothetical protein YP_003139013.1 PFAM: cell cycle protein; KEGG: sfu:Sfum_3469 cell division protein FtsW YP_003139014.1 PFAM: Domain of unknown function DUF1823; KEGG: hypothetical protein YP_003139016.1 TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: har:HEAR0822 sulfate ABC transporter periplasmic substrate-binding protein YP_003139017.1 KEGG: dvm:DvMF_0262 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003139018.1 TIGRFAM: sulfate ABC transporter inner membrane subunit CysT; sulfate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: SULP1; chloroplast sulfate permease YP_003139019.1 TIGRFAM: sulfate ABC transporter inner membrane subunit CysW; sulfate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A0125 ABC type transporter YP_003139020.1 KEGG: pmy:Pmen_4348 sulfate ABC transporter ATPase subunit; TIGRFAM: sulfate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003139021.1 PFAM: peptidase M16 domain protein; KEGG: ppd:Ppro_3215 peptidase M16 domain-containing protein YP_003139022.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: sun:SUN_0966 lipoate protein ligase YP_003139023.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: gbm:Gbem_3274 response regulator receiver sensor signal transduction histidine kinase YP_003139024.1 PFAM: LOR/SDH bifunctional protein conserved domain protein; amidinotransferase; KEGG: pca:Pcar_2163 hypothetical protein YP_003139027.1 KEGG: scl:sce2777 site-specific DNA-methyltransferase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_003139028.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_003139030.1 KEGG: hypothetical protein YP_003139031.1 PFAM: integral membrane protein TerC; KEGG: pca:Pcar_2785 membrane protein TerC YP_003139032.1 This protein performs the mismatch recognition step during the DNA repair process YP_003139033.1 PFAM: methyltransferase type 11; KEGG: tbd:Tbd_2169 hypothetical protein YP_003139034.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: met:M446_5719 integral membrane protein YP_003139035.1 KEGG: hypothetical protein YP_003139037.1 PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_0602 MscS mechanosensitive ion channel YP_003139038.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: vvy:VVA0960 glycosidase YP_003139039.1 PFAM: protein of unknown function DUF839; KEGG: ccs:CCNA_01439 dTDP-glucose 4,6-dehydratase YP_003139040.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: gme:Gmet_3416 ABC transporter-related protein YP_003139042.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: csa:Csal_1635 multi-sensor hybrid histidine kinase YP_003139043.1 PFAM: peptidase M48 Ste24p; KEGG: Os01g0970700; hypothetical protein YP_003139044.1 KEGG: gme:Gmet_0521 protein tyrosine phosphatase; TIGRFAM: arsenate reductase, glutathione/glutaredoxin type; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight YP_003139045.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_003139046.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_003139047.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex YP_003139048.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel. YP_003139049.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_003139050.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_003139051.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_003139052.1 PFAM: ATP synthase I; KEGG: CGLD22; ATP synthase I-like protein; K02116 ATP synthase protein I YP_003139053.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_003139054.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_003139055.1 PFAM: protein of unknown function DUF448; KEGG: hypothetical protein; K07742 hypothetical protein YP_003139056.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_003139057.1 KEGG: sme:SM_b22012 hypothetical protein YP_003139059.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_003139060.1 KEGG: xop:PXO_03536 hypothetical protein YP_003139061.1 KEGG: sat:SYN_00009 cytoplasmic protein YP_003139062.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: scl:sce2586 zinc-binding hydrolase YP_003139063.1 SMART: TIR protein; ATPase AAA; KEGG: tmz:Tmz1t_0031 TIR protein YP_003139064.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_0610 glyoxalase/bleomycin resistance protein/dioxygenase YP_003139065.1 PFAM: pentapeptide repeat protein; KEGG: gur:Gura_3507 pentapeptide repeat-containing protein YP_003139066.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis YP_003139067.1 PFAM: pentapeptide repeat protein; KEGG: gur:Gura_3507 pentapeptide repeat-containing protein YP_003139068.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_003139069.1 KEGG: wpi:WPa_0834 hypothetical protein YP_003139070.1 PFAM: ribonuclease BN; KEGG: cti:RALTA_B0678 ribonuclease BN YP_003139071.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein YP_003139072.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_003139073.1 KEGG: hypothetical protein YP_003139075.1 KEGG: mno:Mnod_1565 hypothetical protein YP_003139076.1 PFAM: protein of unknown function nitrogen fixation YP_003139077.1 PFAM: protein of unknown function nitrogen fixation YP_003139078.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: scl:sce1829 heme biosynthesis protein YP_003139081.1 PFAM: aminoglycoside phosphotransferase; KEGG: hypothetical protein YP_003139082.1 KEGG: similar to predicted protein YP_003139084.1 KEGG: eba:ebA1670 rotamase (prolyl cis-trans isomerase) YP_003139085.1 PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_B0473 secretion protein HylD YP_003139086.1 PFAM: ABC transporter; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: eba:ebA1666 fusion of ABC transporter-type transmembrane and ATP binding protein YP_003139087.1 KEGG: son:SO_2141 transposase YP_003139088.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_003139089.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_003139090.1 PFAM: protein of unknown function UPF0047; KEGG: pzu:PHZ_c0766 hypothetical protein YP_003139091.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: noc:Noc_1851 hypotheticalprotein YP_003139092.1 PFAM: protein of unknown function DUF490; KEGG: predicted protein YP_003139093.1 PFAM: Ycf66 family protein; KEGG: hypothetical protein YP_003139095.1 SMART: extracellular solute-binding protein family 3; KEGG: cko:CKO_02507 glutamate and aspartate transporter subunit YP_003139096.1 PFAM: protein of unknown function UPF0118; KEGG: psa:PST_0396 hypothetical protein YP_003139097.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tgr:Tgr7_0454 binding-protein-dependent transport systems inner membrane component YP_003139101.1 KEGG: hypothetical protein YP_003139102.1 KEGG: sfu:Sfum_0955 hypothetical protein YP_003139103.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_003139104.1 PFAM: XisI protein YP_003139105.1 PFAM: MEKHLA domain protein; KEGG: neu:NE0286 hypothetical protein YP_003139106.1 KEGG: pna:Pnap_4776 cobyrinic acid a,c-diamide synthase YP_003139107.1 KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; Forkhead-associated protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; Forkhead-associated protein YP_003139108.1 KEGG: gur:Gura_0876 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Forkhead-associated protein; SMART: EAL domain protein; GGDEF domain containing protein; Forkhead-associated protein YP_003139111.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: glo:Glov_3164 hypothetical protein YP_003139112.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: hypothetical protein; K03100 signal peptidase I YP_003139113.1 KEGG: dps:DP1282 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase YP_003139115.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: sfu:Sfum_3163 extracellular solute-binding protein, family 3 YP_003139117.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: ade:Adeh_0291 ATPase AAA YP_003139118.1 PFAM: protein of unknown function DUF1257 YP_003139119.1 KEGG: MCP1; molybdenum cofactor carrier protein YP_003139120.1 KEGG: rpa:RPA1017 nitrogen fixation protein YP_003139122.1 KEGG: rpe:RPE_0617 protein of unknown function DUF201 YP_003139123.1 PFAM: NUDIX hydrolase; KEGG: geo:Geob_3053 NUDIX hydrolase YP_003139124.1 PFAM: carbohydrate kinase FGGY; KEGG: hypothetical protein YP_003139125.1 PFAM: protein of unknown function DUF92 transmembrane; KEGG: hypothetical protein YP_003139126.1 KEGG: scl:sce0271 hypothetical protein YP_003139127.1 PFAM: heat shock protein Hsp20; KEGG: sat:SYN_00029 molecular chaperone YP_003139129.1 PFAM: NLP/P60 protein; KEGG: pol:Bpro_2667 peptidace C40 NLP/P60 YP_003139130.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hypothetical protein YP_003139131.1 PFAM: histidine kinase A domain protein; SMART: histidine kinase A domain protein; KEGG: vfm:VFMJ11_A1146 transcriptional regulator YP_003139132.1 PFAM: SUA5/yciO/yrdC domain; KEGG: nmu:Nmul_A0607 SUA5/YciO/YrdC/YwlC YP_003139134.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7056 hypothetical protein YP_003139136.1 KEGG: swp:swp_0648 dehydrogenase (flavoproteins) YP_003139137.1 KEGG: hch:HCH_03141 hypothetical protein YP_003139138.1 PFAM: MASE1 domain protein; ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: mxa:MXAN_6855 sensory box histidine kinase/response regulator YP_003139139.1 PFAM: response regulator receiver; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: dal:Dalk_5003 two component LuxR family transcriptional regulator YP_003139141.1 TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_1613 selenide, water dikinase YP_003139142.1 PFAM: protein of unknown function DUF820; KEGG: gur:Gura_3383 hypothetical protein YP_003139143.1 PFAM: protein of unknown function DUF262; KEGG: shn:Shewana3_0645 hypothetical protein YP_003139144.1 KEGG: shn:Shewana3_0646 hypothetical protein YP_003139145.1 KEGG: mfa:Mfla_1922 peptidase A2A YP_003139146.1 TIGRFAM: CO2 hydration protein YP_003139148.1 molecular chaperone YP_003139150.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: hypothetical protein, conserved YP_003139151.1 KEGG: hypothetical protein YP_003139155.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_003139156.1 KEGG: hypothetical protein YP_003139157.1 KEGG: dar:Daro_3745 hypothetical protein YP_003139158.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pca:Pcar_1420 ribosomal protein L35 YP_003139159.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_003139160.1 PFAM: type III effector Hrp-dependent outers; KEGG: tgr:Tgr7_2035 type III effector Hrp-dependent outers YP_003139161.1 PFAM: macrophage migration inhibitory factor family protein; KEGG: tgr:Tgr7_1126 hypothetical protein YP_003139162.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: rms:RMA_0199 flavoprotein oxygenase DIM6/NTAB family protein YP_003139163.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_003139164.1 PFAM: PilT protein domain protein; SMART: nucleotide binding protein PINc; KEGG: sat:SYN_01402 hypothetical protein YP_003139165.1 KEGG: predicted protein YP_003139166.1 PFAM: hypothetical protein; KEGG: CAAX amino terminal protease family protein; K07052 YP_003139167.1 KEGG: hypothetical protein YP_003139169.1 KEGG: avi:Avi_5803 hypothetical protein YP_003139170.1 KEGG: msl:Msil_0936 hypothetical protein YP_003139171.1 PFAM: alpha/beta hydrolase fold protein; KEGG: noc:Noc_0991 alpha/beta hydrolase fold protein YP_003139173.1 PFAM: PEBP family protein; KEGG: bxe:Bxe_A3372 PBP family phospholipid-binding protein YP_003139175.1 PFAM: ABC transporter; KEGG: har:HEAR2357 ABC-type drug export system, membrane protein YP_003139176.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ATP-binding subunit of unknown ABC transporter; K01990 ABC-2 type transport system ATP-binding protein YP_003139177.1 PFAM: acriflavin resistance protein; KEGG: aeh:Mlg_0882 acriflavin resistance protein YP_003139179.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfu:Sfum_3379 efflux transporter RND family, MFP subunit YP_003139180.1 KEGG: hypothetical protein YP_003139181.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_003139183.1 KEGG: similar to CG6129-PB, isoform B YP_003139184.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_003139185.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_003139186.1 KEGG: vsa:VSAL_II0666 thermosensitive gluconokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_003139187.1 PFAM: RNA-binding S4 domain protein; KEGG: gme:Gmet_0098 RNA-binding S4 YP_003139188.1 KEGG: hypothetical protein YP_003139189.1 PFAM: protein of unknown function UPF0061; KEGG: cak:Caul_4337 hypothetical protein YP_003139192.1 KEGG: scl:sce1777 phosphoserine phosphatase; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; histidine kinase HAMP region domain protein; PAS fold domain protein; PAS fold-3 domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein YP_003139193.1 KEGG: tgr:Tgr7_1598 hypothetical protein YP_003139195.1 KEGG: met:M446_0068 hypothetical protein YP_003139196.1 KEGG: mca:MCA2055 hypothetical protein YP_003139197.1 PFAM: protein of unknown function DUF952; KEGG: bid:Bind_1067 hypothetical protein YP_003139198.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sat:SYN_00585 GDP-L-fucose synthase YP_003139199.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: cbc:CbuK_1565 GDP-mannose 4,6 dehydratase YP_003139200.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_003139201.1 Catalyzes the phosphorylation of UMP to UDP YP_003139202.1 PFAM: GUN4 domain protein; KEGG: ORF155 YP_003139203.1 NAD and NADP-dependent; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; this isozyme is involved in the photosynthetic carbon assimilation pathway in Anabaena YP_003139204.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_003139205.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_003139206.1 PFAM: conserved hypothetical protein; KEGG: hypothetical protein YP_003139208.1 PFAM: nuclear transport factor 2 YP_003139209.1 PFAM: Orange carotenoid protein YP_003139210.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: dal:Dalk_1431 phosphate uptake regulator, PhoU YP_003139211.1 TIGRFAM: calcium/proton antiporter, CaCA family; calcium/proton exchanger; PFAM: sodium/calcium exchanger membrane region; KEGG: mca:MCA0142 calcium/proton exchanger YP_003139213.1 PFAM: response regulator receiver; CheW domain protein; Signal transducing histidine kinase homodimeric; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; CheW domain protein; KEGG: maq:Maqu_3772 CheA signal transduction histidine kinase YP_003139214.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_003139215.1 PFAM: adenylate cyclase; KEGG: dds:Ddes_1849 adenylate cyclase YP_003139217.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; CpcD phycobilisome linker domain protein; KEGG: hypothetical protein; K02641 ferredoxin--NADP+ reductase YP_003139218.1 PFAM: protein of unknown function DUF187; KEGG: eum:ECUMN_1745 lipoprotein YP_003139219.1 PFAM: protein of unknown function DUF39; KEGG: sfu:Sfum_1059 protein of unknown function DUF39 YP_003139221.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; the sigma factors in this cluster are not required for growth or development, however may be involved in expression of nitrogen fixation genes YP_003139223.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: yps:pYptb0009 hypothetical protein YP_003139224.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce2003 hypothetical protein YP_003139226.1 KEGG: psa:PST_1291 cob(I)yrinic acid a,c-diamide adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_003139228.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_003139229.1 PFAM: photosystem II oxygen evolving complex protein PsbP; KEGG: Os10g0461100; hypothetical protein YP_003139230.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003139231.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_003139232.1 KEGG: viral A-type inclusion protein YP_003139233.1 KEGG: dno:DNO_0576 hypothetical protein YP_003139234.1 KEGG: scl:sce2799 hypothetical protein YP_003139235.1 PFAM: pentapeptide repeat protein; KEGG: CPLD44; thylakoid lumenal protein YP_003139236.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: hypothetical protein YP_003139237.1 PFAM: protein of unknown function UPF0118; KEGG: atc:AGR_C_2113 hypothetical protein YP_003139238.1 KEGG: bba:Bd1290 fimbrial protein PilA YP_003139239.1 PFAM: protein of unknown function YGGT; KEGG: predicted protein YP_003139241.1 PFAM: hypothetical protein; KEGG: CAAX amino terminal protease family protein; K07052 YP_003139242.1 PFAM: glycosyl transferase family 39; KEGG: gme:Gmet_0887 glycosyl transferase family protein YP_003139243.1 KEGG: rec:RHECIAT_CH0002972 hypothetical protein YP_003139244.1 PFAM: phosphoglycerate mutase; KEGG: hypothetical protein YP_003139245.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003139246.1 KEGG: pca:Pcar_1464 exopolysaccharide biosynthesis protein YP_003139247.1 PFAM: polysaccharide export protein; KEGG: vcj:VCD_003399 capsular polysaccharide synthesis enzyme CpsC polysaccharide export YP_003139249.1 TIGRFAM: eight transmembrane protein EpsH; KEGG: dat:HRM2_19780 hypothetical protein YP_003139250.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mrd:Mrad2831_4614 glutamine--scyllo-inositol transaminase YP_003139251.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO1095 oligopeptide ABC transporter membrane protein YP_003139252.1 KEGG: hpg:HPG27_441 type II DNA modification enzyme YP_003139254.1 KEGG: hap:HAPS_1919 moodification methylase HgaIA (M.HgaIA) (cytosine-specific methyltransferase HgaIA) (M.HgaI-1) YP_003139255.1 PFAM: pentapeptide repeat protein; KEGG: mms:mma_2224 pentapeptide repeat-containing protein YP_003139256.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; transketolase; KEGG: tgr:Tgr7_2034 transketolase YP_003139257.1 KEGG: scl:sce2252 hypothetical protein YP_003139258.1 KEGG: dol:Dole_2184 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_003139259.1 PFAM: protein of unknown function DUF1555; KEGG: hypothetical protein LOC763824 YP_003139260.1 PFAM: protein of unknown function DUF29; KEGG: plu:plu4118 hypothetical protein YP_003139262.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_003139263.1 TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; KEGG: sun:SUN_1818 5-methyltetrahydrofolate--homocysteine methyltransferase YP_003139264.1 KEGG: dol:Dole_1784 hypothetical protein YP_003139265.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pha:PSHAa2862 DNA-damage-inducible protein F YP_003139266.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: mxa:MXAN_4688 single-stranded-DNA-specific exonuclease RecJ YP_003139267.1 PFAM: protein of unknown function DUF1555; KEGG: bac:BamMC406_3019 type VI secretion system Vgr family protein YP_003139268.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: similar to 3'(2',5')-bisphosphate nucleotidase; K01082 3'(2'), 5'-bisphosphate nucleotidase YP_003139269.1 PFAM: CHAD domain containing protein; KEGG: bph:Bphy_1766 CHAD domain-containing protein YP_003139270.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: geo:Geob_1545 peptidase U62 modulator of DNA gyrase YP_003139271.1 SMART: hypothetical protein; KEGG: hch:HCH_03378 hypothetical protein YP_003139272.1 PFAM: protein of unknown function UPF0150; KEGG: aeh:Mlg_2272 hypothetical protein YP_003139273.1 PFAM: YcfA family protein; KEGG: nha:Nham_0566 YcfA-like YP_003139274.1 PFAM: protein of unknown function DUF928 YP_003139275.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_3622 ABC transporter YP_003139276.1 PFAM: periplasmic solute binding protein; KEGG: bbt:BBta_1341 ABC transporter substrate-binding protein YP_003139277.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bpy:Bphyt_7085 Rieske (2Fe-2S) domain protein YP_003139279.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: tau:Tola_2845 prevent-host-death family protein YP_003139280.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: plasmid stabilization system; Addiction module toxin Txe/YoeB; KEGG: tau:Tola_2844 addiction module toxin, Txe/YoeB family YP_003139282.1 PFAM: glycosyl transferase family 2; KEGG: hypothetical protein YP_003139283.1 KEGG: hypothetical protein YP_003139284.1 PFAM: glutathione S-transferase domain; KEGG: mxa:MXAN_1427 glutathione S-transferase YP_003139285.1 controls the interaction of photosystem II cores with light-harvesting antenna YP_003139286.1 KEGG: dal:Dalk_3315 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_003139287.1 PFAM: glycosyl transferase, family 3-like; KEGG: tgr:Tgr7_2176 glycosyl transferase, family 3-like protein YP_003139288.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: bmj:BMULJ_01954 phycobiliprotein YP_003139289.1 ferredoxin-dependent assimilatory nitrite reductase YP_003139290.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_1511 nitrite transporter YP_003139292.1 PFAM: protein of unknown function DUF820 YP_003139293.1 KEGG: saz:Sama_0310 hypothetical protein YP_003139294.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: mpt:Mpe_A2319 assimilatory nitrate reductase (NADH) subunit alpha apoprotein YP_003139296.1 PFAM: hypotheticalprotein; SMART: hypothetical protein; KEGG: hch:HCH_03378 hypothetical protein YP_003139297.1 KEGG: shl:Shal_2443 hypothetical protein YP_003139298.1 PFAM: band 7 protein; KEGG: ecg:E2348C_3344 hypothetical protein YP_003139299.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce2003 hypothetical protein YP_003139300.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_003139301.1 KEGG: hypothetical protein, conserved; K09966 hypothetical protein YP_003139302.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; KEGG: scl:sce7353 protein kinase YP_003139303.1 PFAM: UspA domain protein; KEGG: dvm:DvMF_2102 UspA domain protein YP_003139304.1 PFAM: protein of unknown function DUF204; KEGG: cju:C8J_0163 hypothetical protein YP_003139305.1 KEGG: gbm:Gbem_1450 respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_003139307.1 PFAM: Ferritin Dps family protein; KEGG: aha:AHA_1110 DPS family protein YP_003139308.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003139309.1 TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pfl:PFL_3655 cobalamin biosynthesis protein CobW YP_003139310.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003139311.1 PFAM: ion transport 2 domain protein; ion transport protein; KEGG: similar to ion transporter YP_003139312.1 KEGG: hypothetical protein; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein YP_003139313.1 PFAM: glycosyl hydrolase 38 domain protein; glycoside hydrolase family 38; glycoside hydrolase family 38 central region; KEGG: ret:RHE_PF00487 alpha-mannosidase protein YP_003139314.1 KEGG: NADH-ubiquinone oxidoreductase chain 4 YP_003139315.1 KEGG: sew:SeSA_A1756 inner membrane protein YP_003139316.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_5851 acetyltransferase YP_003139317.1 PFAM: pentapeptide repeat protein; KEGG: net:Neut_2273 hypothetical protein YP_003139318.1 KEGG: cak:Caul_1506 XRE family transcriptional regulator YP_003139319.1 PFAM: protein of unknown function DUF497; KEGG: xfm:Xfasm12_0665 hypothetical protein YP_003139320.1 KEGG: mxa:MXAN_1745 hypothetical protein YP_003139321.1 PFAM: cytochrome P450; KEGG: bja:bll0020 hypothetical protein YP_003139322.1 KEGG: son:SO_3711 hypothetical protein YP_003139323.1 PFAM: peptidase S45 penicillin amidase; KEGG: pla:Plav_0937 glutaryl-7-aminocephalosporanic-acid acylase YP_003139325.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: sfu:Sfum_4050 protein of unknown function DUF21 YP_003139327.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: DRR2; diatom response regulator 2 YP_003139329.1 main replicative polymerase; these cyanobacterial enzymes contain C-terminal split inteins; they are joined with the C-terminal fragments that contain N-terminal inteins that are encoded elsewhere in the genome YP_003139330.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: Pts; 6-pyruvoyl-tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase YP_003139331.1 KEGG: hypothetical protein YP_003139332.1 SMART: ribonuclease III; KEGG: URF 4-related YP_003139333.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: kpe:KPK_3076 anti-anti-sigma factor YP_003139334.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: hch:HCH_01952 serine/threonine protein kinase YP_003139335.1 KEGG: hypothetical protein YP_003139336.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_003139338.1 KEGG: dal:Dalk_2271 NADH dehydrogenase (quinone) YP_003139339.1 PFAM: protein of unknown function DUF87; KEGG: efe:EFER_3096 nucleoside triphosphate hydrolase YP_003139341.1 KEGG: mms:mma_2251 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003139342.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: dal:Dalk_0932 SUA5/YciO/YrdC/YwlC family protein YP_003139343.1 PFAM: protein of unknown function DUF111; KEGG: gur:Gura_0215 hypothetical protein YP_003139344.1 KEGG: mlo:mlr7557 hypothetical protein YP_003139345.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: G3PAT-1; glycerol-3-phosphate-acyltransferase YP_003139346.1 PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: neu:NE0981 HhH-GPD YP_003139347.1 PFAM: protein of unknown function DUF785; KEGG: dat:HRM2_29420 RimK2 YP_003139348.1 PFAM: lytic transglycosylase catalytic; KEGG: geo:Geob_3392 lytic transglycosylase catalytic YP_003139350.1 PFAM: ROK family protein; KEGG: glo:Glov_1263 ROK family protein YP_003139351.1 PFAM: protein of unknown function DUF820 YP_003139353.1 PFAM: CBS domain containing protein; protein of unknown function CP12; SMART: CBS domain containing protein; KEGG: vvy:VV0994 hypothetical protein YP_003139354.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: gsu:GSU1199 nuclease YP_003139355.1 KEGG: peptidyl-tRNA hydrolase family protein; K01056 peptidyl-tRNA hydrolase, PTH1 family; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003139356.1 PFAM: ribosomal protein PSRP-3/Ycf65; KEGG: PSRP-3; plastid-specific ribosomal protein 3 YP_003139357.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_003139358.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_003139359.1 PFAM: Ppx/GppA phosphatase; KEGG: gme:Gmet_0880 Ppx/GppA phosphatase YP_003139360.1 PFAM: NUDIX hydrolase; KEGG: scl:sce4456 MutT/nudix family protein YP_003139361.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_003139363.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: geo:Geob_2606 protein serine phosphatase with GAF(s) sensor(s) YP_003139364.1 KEGG: hypothetical protein YP_003139365.1 KEGG: scl:sce2260 secreted protein YP_003139366.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: hch:HCH_05741 FOG: CheY-like receiver YP_003139369.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gsu:GSU0451 DNA-binding response regulator YP_003139370.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-subunit beta is inserted between the strands, where it probes for the presence of a lesion YP_003139372.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: spc:Sputcn32_0105 RND family efflux transporter MFP subunit YP_003139373.1 PFAM: acriflavin resistance protein; KEGG: dde:Dde_2381 acriflavin resistance protein D YP_003139374.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pca:Pcar_3082 two component sensor histidine kinase YP_003139375.1 PFAM: inositol monophosphatase; KEGG: scl:sce0670 inositol monophosphatase family protein CysQ YP_003139376.1 TIGRFAM: nitrate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: har:HEAR0429 nitrate ABC transporter permease YP_003139377.1 KEGG: aeh:Mlg_1703 nitrate transporter YP_003139378.1 KEGG: psa:PST_4094 nitrate ABC transporter ATP-binding protein, TIGRFAM: nitrate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003139379.1 KEGG: gme:Gmet_1425 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003139380.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_003139381.1 PFAM: protein of unknown function DUF1555; KEGG: tmz:Tmz1t_1138 variant PEP-Cterm exosortase signal YP_003139382.1 PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_4404 major facilitator family transporter YP_003139383.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; type IV pilus assembly PilZ; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase YP_003139384.1 KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase; TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; PFAM: condensation domain protein; phosphopantetheine-binding YP_003139385.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; type IV pilus assembly PilZ; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3634 non-ribosomal peptide synthase YP_003139386.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; type IV pilus assembly PilZ; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase YP_003139387.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase YP_003139388.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_003139389.1 PFAM: restriction endonuclease; KEGG: dps:DP2035 Mrr restriction system protein YP_003139390.1 PFAM: protein of unknown function DUF29; KEGG: plu:plu4118 hypothetical protein YP_003139391.1 KEGG: glo:Glov_2250 HicB family protein YP_003139392.1 PFAM: transglutaminase; SMART: transglutaminase; KEGG: gur:Gura_0189 transglutaminase domain-containing protein YP_003139393.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003139394.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis along with cofH YP_003139395.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_003139396.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_2130 cation transporting ATPase, E1-E2 type YP_003139398.1 involved in light-induced Na+-dependent proton extrusion YP_003139399.1 TIGRFAM: thioester reductase domain protein; PFAM: Male sterility domain; KEGG: mxa:MXAN_4525 non-ribosomal peptide synthase MxaA YP_003139400.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: pna:Pnap_2826 regulatory protein, ArsR YP_003139401.1 PFAM: pentapeptide repeat protein; KEGG: sat:SYN_00349 pentapeptide repeat-containing protein YP_003139402.1 oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis YP_003139404.1 PFAM: aldose 1-epimerase; KEGG: mxa:MXAN_5892 aldose 1-epimerase family protein YP_003139406.1 PFAM: PemK family protein; KEGG: gur:Gura_3814 hypothetical protein YP_003139410.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mch:Mchl_2640 5-formyltetrahydrofolate cyclo-ligase YP_003139413.1 main replicative polymerase YP_003139414.1 PFAM: glycosyl transferase family 2; KEGG: acp:A2cp1_2967 glycosyl transferase family 2 YP_003139415.1 PFAM: sulfotransferase; KEGG: hch:HCH_02730 hypothetical protein YP_003139416.1 KEGG: hypothetical protein YP_003139417.1 Converts chlorophyllide a into protochlorophyllide; light dependent YP_003139418.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: scl:sce1810 phosphohydrolase YP_003139419.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: gme:Gmet_3392 phenylacrylic acid decarboxylase YP_003139421.1 PFAM: isochorismatase hydrolase; KEGG: hypothetical protein YP_003139422.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: noc:Noc_2551 zinc-containing alcohol dehydrogenase superfamily protein YP_003139423.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase subunit alpha domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: hypothetical protein; K00284 glutamate synthase (ferredoxin) YP_003139424.1 PFAM: protein of unknown function DUF497 YP_003139425.1 KEGG: rpe:RPE_2042 hypothetical protein YP_003139426.1 PFAM: protein of unknown function DUF1704; KEGG: afw:Anae109_0751 hypothetical protein YP_003139427.1 PFAM: histidine kinase A domain protein; SMART: histidine kinase A domain protein; KEGG: pau:PA14_72390 two-component sensor YP_003139428.1 KEGG: cko:CKO_04418 hypothetical protein YP_003139429.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_0762 hypothetical protein YP_003139431.1 PFAM: polynucleotide adenylyltransferase region; CBS domain containing protein; phosphoesterase RecJ domain protein; SMART: CBS domain containing protein; KEGG: glo:Glov_0878 CBS domain containing protein YP_003139433.1 PFAM: glycosyl transferase family 2; KEGG: dol:Dole_1612 glycosyl transferase family protein YP_003139434.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aha:AHA_3529 glyoxylase I family protein YP_003139436.1 PFAM: glycosyl transferase family 2; KEGG: afr:AFE_1346 glycosyl transferase, group 2 family protein YP_003139437.1 KEGG: bxe:Bxe_A3010 glutathione S-transferase domain-containing protein YP_003139438.1 KEGG: sde:Sde_2784 heterocyst specific ABC-transporter ATP-binding subunit DevA-like; TIGRFAM: ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA YP_003139439.1 TIGRFAM: DevC protein; PFAM: protein of unknown function DUF214; KEGG: sde:Sde_2783 ABC transporter membrane spanning subunit, DevC-like YP_003139440.1 TIGRFAM: ABC exporter membrane fusion protein, DevB family; PFAM: secretion protein HlyD family protein; KEGG: sde:Sde_2782 multidrug resistance efflux pump-like YP_003139441.1 PFAM: stage II sporulation E family protein; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; KEGG: scl:sce1777 phosphoserine phosphatase YP_003139442.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_003139443.1 KEGG: tgr:Tgr7_1598 hypothetical protein YP_003139444.1 KEGG: tgr:Tgr7_1597 hypothetical protein YP_003139445.1 KEGG: rpt:Rpal_2176 adenylate/guanylate cyclase with integral membrane sensor YP_003139446.1 PFAM: methyltransferase type 11; KEGG: mca:MCA2563 hypothetical protein YP_003139447.1 KEGG: psb:Psyr_4751 cell division transporter substrate-binding protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_003139448.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: gur:Gura_3506 methyltransferase type 11 YP_003139449.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_003139450.1 PFAM: pentapeptide repeat protein; KEGG: sat:SYN_00349 pentapeptide repeat-containing protein YP_003139453.1 KEGG: lip:LIC079 hypothetical protein YP_003139455.1 KEGG: tbd:Tbd_1486 hypothetical protein YP_003139456.1 KEGG: mxa:MXAN_0389 hypothetical protein YP_003139457.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_003139458.1 KEGG: dat:HRM2_32220 diguanylate cyclase (GGDEF) domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver; GAF domain protein YP_003139459.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_003139461.1 KEGG: xfn:XfasM23_1700 modification methylase NspV YP_003139462.1 KEGG: xfn:XfasM23_1701 type II site-specific deoxyribonuclease YP_003139464.1 KEGG: reu:Reut_C6171 hypothetical protein YP_003139465.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: maq:Maqu_2951 GntR family transcriptional regulator YP_003139467.1 PFAM: substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: cbc:CbuK_0364 glycine betaine transport system permease protein YP_003139468.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: cti:RALTA_A2358 transmembrane lipoprotein, DUF306 YP_003139470.1 KEGG: maq:Maqu_3542 glutathione S-transferase domain-containing protein YP_003139473.1 PFAM: DoxX family protein; KEGG: rhi:NGR_c35980 conserved hypothetical protein, DoxX family YP_003139474.1 KEGG: sdn:Sden_1121 hypothetical protein YP_003139475.1 synthesizes RNA primers at the replication forks YP_003139476.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: esa:ESA_02618 DNA-binding transcriptional repressor MngR YP_003139477.1 KEGG: pin:Ping_3687 ABC phosphonate transporter ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter; SMART: ATPase AAA YP_003139478.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: maq:Maqu_4145 ABC transporter YP_003139479.1 PFAM: phosphonate metabolism PhnJ; KEGG: tbd:Tbd_2293 phosphonate metabolism protein PhnJ YP_003139480.1 KEGG: gur:Gura_2479 hypothetical protein YP_003139482.1 KEGG: tau:Tola_1357 hypothetical protein YP_003139483.1 PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: pst:PSPTO_5280 transcriptional regulator CadR YP_003139484.1 PFAM: protein of unknown function DUF1555; KEGG: hypothetical protein YP_003139485.1 PFAM: pentapeptide repeat protein; WD-40 repeat protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_003139486.1 PFAM: aminotransferase class V; KEGG: hypothetical protein YP_003139487.1 KEGG: hypothetical protein YP_003139488.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce2003 hypothetical protein YP_003139489.1 PFAM: polysaccharide deacetylase; KEGG: hypothetical protein YP_003139490.1 KEGG: predicted protein YP_003139491.1 PFAM: heat shock protein DnaJ SMART: heat shock protein DnaJ KEGG: hypothetical protein YP_003139492.1 KEGG: hypothetical protein YP_003139494.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pmu:PM0317 hypothetical protein YP_003139495.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: sde:Sde_3356 hypothetical protein YP_003139496.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: ses:SARI_00854 cobalamin biosynthesis protein YP_003139497.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_003139498.1 TIGRFAM: OpcA protein; PFAM: peptidoglycan-binding domain 1 protein; KEGG: scl:sce4354 oxppcycle protein OpcA YP_003139499.1 KEGG: afr:AFE_0072 hypothetical protein YP_003139500.1 KEGG: rpb:RPB_2524 hypothetical protein YP_003139501.1 KEGG: scl:sce5398 hypothetical protein YP_003139502.1 KEGG: sun:SUN_0701 hypothetical protein YP_003139505.1 KEGG: gur:Gura_3638 hypothetical protein YP_003139506.1 KEGG: mlo:mlr0096 hypothetical protein YP_003139507.1 KEGG: pfo:Pfl01_3332 hypothetical protein YP_003139509.1 PFAM: protein of unknown function DUF185; KEGG: gur:Gura_0943 hypothetical protein YP_003139510.1 PFAM: protein of unknown function DUF1499; KEGG: dps:DP1404 hypothetical protein YP_003139511.1 KEGG: Os04g0528100; hypothetical protein YP_003139513.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_003139514.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_003139515.1 PFAM: metallophosphoesterase; KEGG: vok:COSY_0614 metallophosphoesterase YP_003139516.1 PFAM: photosystem II oxygen evolving complex protein PsbU; KEGG: photosystem II 12 kD extrinsic protein; K02719 photosystem II PsbU protein YP_003139517.1 PFAM: sodium/hydrogen exchanger; UspA domain protein; KEGG: scl:sce2508 cation/hydrogen exchanger YP_003139520.1 PFAM: protein of unknown function DUF218; KEGG: psa:PST_3766 probable transmembrane protein YP_003139521.1 PFAM: glycosyl transferase family 2; KEGG: oan:Oant_3379 glycosyl transferase, group 2 family protein YP_003139522.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sun:SUN_0807 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_003139523.1 KEGG: scl:sce4360 hypothetical protein YP_003139524.1 KEGG: nmu:Nmul_A2461 hypothetical protein YP_003139525.1 shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunit D, with NdhB and NdhF are core membrane components YP_003139526.1 PFAM: chloride channel core; KEGG: pat:Patl_2595 Cl-channel, voltage gated YP_003139527.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gsu:GSU1723 mechanosensitive ion channel family protein YP_003139528.1 KEGG: hypothetical protein YP_003139529.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: hch:HCH_06472 hypothetical protein YP_003139530.1 PFAM: cytochrome c class I; KEGG: cytochrome c553; K08906 cytochrome c6 YP_003139531.1 KEGG: scl:sce7056 hypothetical protein YP_003139532.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrsubunit betas scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_003139533.1 PFAM: RDD domain containing protein YP_003139534.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_003139535.1 KEGG: cja:CJA_2624 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_003139538.1 TIGRFAM: photosystem q(b) protein; PFAM: photosynthetic reaction centre protein; KEGG: psbA; PSII D1-protein; K02703 photosystem II PsbA protein YP_003139539.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce4360 hypothetical protein YP_003139540.1 PFAM: GTP-binding protein HSR1-related; KEGG: tau:Tola_1167 GTP-binding protein HSR1-related YP_003139541.1 PFAM: GTP-binding protein HSR1-related; KEGG: tau:Tola_1166 GTP-binding protein HSR1-related YP_003139542.1 KEGG: hypothetical protein YP_003139543.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: mxa:MXAN_5032 HAE1 family efflux transporter YP_003139544.1 PFAM: amidohydrolase; amidohydrolase; KEGG: maq:Maqu_4150 amidohydrolase 3 YP_003139545.1 TIGRFAM: phosphonate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2966 phosphonate ABC transporter inner membrane subunit YP_003139546.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: pmy:Pmen_2889 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_003139547.1 KEGG: psb:Psyr_2247 ABC transporter; TIGRFAM: phosphonate ABC transporter ATPase; PFAM: ABC transporter; SMART: AAA ATPase YP_003139548.1 PFAM: pentapeptide repeat protein; KEGG: mms:mma_2224 pentapeptide repeat-containing protein YP_003139549.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_003139550.1 KEGG: hypothetical protein; K10798 poly YP_003139551.1 SMART: CHRD domain containing protein; KEGG: nmu:Nmul_A1290 CHRD YP_003139552.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: hypothetical protein YP_003139553.1 PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: scl:sce3630 WD repeat-containing protein YP_003139555.1 PFAM: PspA/IM30 family protein; KEGG: hypothetical protein; K03969 phage shock protein A YP_003139556.1 PFAM: thioredoxin domain protein; KEGG: mmw:Mmwyl1_3584 thioredoxin YP_003139557.1 catalyzes the formation of N-succinyl-2-L-amino-6-oxoheptanedioate and L-glutamate from N-succinyl-L-2,6-diaminoheptanedioate and 2-oxoglutarate YP_003139558.1 PFAM: protein of unknown function UPF0102; KEGG: prw:PsycPRwf_0497 hypothetical protein YP_003139559.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: har:HEAR0512 transcriptional regulator YP_003139561.1 KEGG: sec:SC4351 hypothetical protein YP_003139562.1 PFAM: pentapeptide repeat protein; KEGG: hypothetical protein YP_003139563.1 PFAM: sulfotransferase; KEGG: scl:sce1864 hypothetical protein YP_003139564.1 KEGG: ank:AnaeK_2876 hypothetical protein YP_003139565.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: gme:Gmet_2330 NAD-dependent epimerase/dehydratase YP_003139566.1 PFAM: glycosyl transferase group 1; KEGG: sil:SPO0854 glycosyl transferase, group 1 family protein YP_003139567.1 PFAM: glycosyl transferase family 2; KEGG: dvm:DvMF_2696 glycosyl transferase family 2 YP_003139568.1 KEGG: eta:ETA_13300 exopolysaccharide biosynthesis protein YP_003139569.1 KEGG: dvl:Dvul_3035 asparagine synthase (glutamine-hydrolyzing) YP_003139570.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ret:RHE_CH00754 polysaccharide ABC transporter ATP-binding protein YP_003139571.1 PFAM: ABC transporter; KEGG: ret:RHE_CH00753 polysaccharide ABC transporter permease protein YP_003139572.1 PFAM: PKD domain containing protein; Hemolysin-type calcium-binding region; SMART: PKD domain containing protein; KEGG: tcx:Tcr_0105 VCBS YP_003139573.1 KEGG: dat:HRM2_19780 hypothetical protein YP_003139575.1 PFAM: GtrA family protein; glycosyl transferase family 2; KEGG: dolichol monophosphate mannose synthase; K00721 dolichol-phosphate mannosyltransferase YP_003139576.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_003139577.1 PFAM: periplasmic solute binding protein; KEGG: abu:Abu_1739 cation ABC transporter periplasmic-binding protein YP_003139578.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_2734 ABC transporter YP_003139579.1 PFAM: ABC transporter; KEGG: sfu:Sfum_2735 ABC transporter YP_003139580.1 PFAM: FAD dependent oxidoreductase; KEGG: pub:SAR11_0568 D-amino acid oxidoreductase family protein YP_003139581.1 PFAM: major royal jelly protein; KEGG: sbl:Sbal_1418 hypothetical protein YP_003139582.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; resolvase domain protein; KEGG: xfm:Xfasm12_1564 hypothetical protein YP_003139583.1 KEGG: cff:CFF8240_0491 glycosyl transferase, group 1 YP_003139584.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce5208 hypothetical protein YP_003139585.1 PFAM: glycosyl transferase family 39; KEGG: fph:Fphi_1811 4-amino-4-deoxy-L-arabinose transferase-like protein YP_003139586.1 KEGG: ajs:Ajs_1712 hydratase/decarboxylase YP_003139587.1 PFAM: lipase class 2; KEGG: shl:Shal_3716 PGAP1 family protein YP_003139588.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pub:SAR11_0553 DegT/DnrJ/EryC1/StrS aminotransferase YP_003139590.1 PFAM: protein of unknown function DUF497; KEGG: ppr:PBPRB0296 hypothetical protein YP_003139591.1 KEGG: gur:Gura_2218 hypothetical protein YP_003139593.1 KEGG: scl:sce4876 hypothetical protein YP_003139596.1 PFAM: TROVE domain protein; KEGG: scl:sce5600 hypothetical protein YP_003139598.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_003139601.1 KEGG: gur:Gura_1360 hypothetical protein YP_003139602.1 KEGG: gur:Gura_1361 hypothetical protein YP_003139603.1 KEGG: oan:Oant_4708 hypothetical protein YP_003139604.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afw:Anae109_0236 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_003139605.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003139606.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_003139607.1 KEGG: pol:Bpro_1923 excinuclease ABC, C subunit-like; TIGRFAM: group I intron endonuclease; PFAM: excinuclease ABC C subunit domain protein; SMART: excinuclease ABC C subunit domain protein YP_003139609.1 PFAM: protein of unknown function DUF497; KEGG: cak:Caul_1507 hypothetical protein YP_003139610.1 PFAM: protein of unknown function DUF29; KEGG: mrd:Mrad2831_1125 hypothetical protein YP_003139611.1 PFAM: glutathione peroxidase; KEGG: bxe:Bxe_A1665 glutathione peroxidase YP_003139614.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce0260 hypothetical protein YP_003139615.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: dehydrogenase YP_003139617.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_003139618.1 Catalyzes a reaction in which the CO2 acceptor molecule, RuBP, is generated via the phosphorylation of ribulose 5-phosphate with ATP YP_003139619.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_1700 PAS sensor, signal transduction histidine kinase YP_003139620.1 PFAM: KaiB domain protein; KEGG: geo:Geob_3568 KaiB domain protein YP_003139621.1 acts as a promotor non-specific transcription repressor YP_003139622.1 PFAM: N-6 DNA methylase; KEGG: lpc:LPC_2790 type I restriction enzyme HindVIIP M protein YP_003139623.1 KEGG: rlt:Rleg2_0774 hypothetical protein YP_003139624.1 KEGG: noc:Noc_2942 hypothetical protein YP_003139626.1 PFAM: PilT protein domain protein; KEGG: gur:Gura_1138 PilT domain-containing protein YP_003139627.1 PFAM: restriction modification system DNA specificity domain; KEGG: sfr:Sfri_2607 restriction modification system DNA specificity domain YP_003139629.1 PFAM: PilT protein domain protein; KEGG: pnu:Pnuc_0688 PilT domain-containing protein YP_003139630.1 PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; KEGG: dol:Dole_0278 hypothetical protein YP_003139631.1 PFAM: PEP-utilising protein mobile region; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilizing protein; KEGG: mxa:MXAN_6800 phosphoenolpyruvate synthase YP_003139632.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003139633.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_003139634.1 PFAM: TnsA endonuclease; KEGG: afr:AFE_3199 Tn5468, transposase protein A YP_003139635.1 PFAM: transposase IS4 family protein; KEGG: hypothetical protein LOC100198068 YP_003139636.1 PFAM: transposase family protein; KEGG: noc:Noc_1615 transposase YP_003139637.1 PFAM: monooxygenase FAD-binding; KEGG: mxa:MXAN_3398 FAD-dependent oxidoreductase YP_003139638.1 PFAM: regulatory protein TetR; KEGG: atc:AGR_L_676 hypothetical protein YP_003139639.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: gur:Gura_2320 CBS domain-containing protein YP_003139640.1 KEGG: hypothetical protein YP_003139641.1 KEGG: xau:Xaut_1362 glycosyl transferase family protein YP_003139642.1 KEGG: hypothetical protein YP_003139643.1 KEGG: hypothetical protein YP_003139644.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_003139645.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hypothetical protein YP_003139647.1 PFAM: monooxygenase FAD-binding; KEGG: mno:Mnod_7773 monooxygenase FAD-binding YP_003139648.1 Converts isocitrate to alpha ketoglutarate YP_003139649.1 KEGG: vsp:VS_II0832 ABC transporter ATP-binding protein-related protein YP_003139650.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; KEGG: pae:PA1740 hypothetical protein YP_003139651.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: geo:Geob_3726 cyclic nucleotide-binding protein YP_003139653.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: sfu:Sfum_2882 pseudouridine synthase, RluA family YP_003139654.1 PFAM: hypothetical protein; KEGG: tgr:Tgr7_2229 hypothetical protein YP_003139655.1 KEGG: hypothetical protein YP_003139657.1 PFAM: photosystem I reaction centre subunit XI PsaL; KEGG: photosystem I reaction center subunit XI; K02699 photosystem I subunit XI YP_003139658.1 TIGRFAM: photosystem I reaction center subunit VIII YP_003139659.1 KEGG: abo:ABO_2129 hypothetical protein YP_003139660.1 KEGG: abo:ABO_2128 iron-sulfur binding domain-containing protein YP_003139661.1 KEGG: abo:ABO_2127 DsrE/DsrF family oxidoreductase family protein YP_003139662.1 PFAM: UspA domain protein; KEGG: Os01g0511100; hypothetical protein YP_003139663.1 KEGG: eum:ECUMN_3207 hypothetical protein YP_003139664.1 PFAM: transcriptional regulator domain protein; response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0243 two component transcriptional regulator, winged helix family YP_003139665.1 PFAM: protein of unknown function DUF1239; KEGG: pfs:PFLU0885 hypothetical protein YP_003139666.1 PFAM: protein of unknown function DUF88; KEGG: oan:Oant_2638 protein of unknown function DUF88 YP_003139667.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_003139668.1 PFAM: alpha/beta hydrolase fold protein; KEGG: rpd:RPD_1181 alpha/beta hydrolase fold protein YP_003139669.1 PFAM: inositol monophosphatase; KEGG: ccs:CCNA_02335 myo-inositol-1(or 4)-monophosphatase YP_003139671.1 KEGG: GART; phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase; K11787 phosphoribosylamine--glycine ligase / phosphoribosylglycin-TRUNCATED-; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase YP_003139672.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis YP_003139673.1 KEGG: dal:Dalk_3770 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: Miro domain protein; leucine-rich repeat protein; Ras family protein; SMART: Ras small GTPase, Rab type; Ras small GTPase, Ras type; leucine-rich repeat-containing protein typical subtype YP_003139674.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase; KEGG: spe:Spro_0036 sugar phosphatase YP_003139675.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: vsp:VS_1632 methyltransferase YP_003139676.1 PFAM: protein of unknown function DUF214; KEGG: glo:Glov_3570 protein of unknown function DUF214 YP_003139678.1 KEGG: hypothetical protein YP_003139679.1 KEGG: bgl:bglu_2p1030 5'-methylthioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine or other phosphorylase family 1 YP_003139680.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_003139681.1 KEGG: Os04g0379400; hypothetical protein YP_003139682.1 KEGG: CPLD36; hypothetical protein YP_003139683.1 KEGG: dvl:Dvul_1263 hypothetical protein YP_003139684.1 KEGG: hypothetical protein YP_003139685.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_003139686.1 PFAM: response regulator receiver; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: acb:A1S_2811 chemotactic signal transduction system component YP_003139687.1 PFAM: chemotaxis sensory transducer; GAF domain protein; SMART: chemotaxis sensory transducer; GAF domain protein; histidine kinase HAMP region domain protein; KEGG: rfr:Rfer_1374 methyl-accepting chemotaxis sensory transducer YP_003139688.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: tdn:Suden_0971 CheW protein YP_003139689.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_0131 response regulator receiver YP_003139690.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_003139691.1 PFAM: UspA domain protein; KEGG: mxa:MXAN_3966 universal stress family protein YP_003139692.1 KEGG: mrd:Mrad2831_4636 alkaline phosphatase YP_003139693.1 PFAM: heat shock protein Hsp20; KEGG: gsu:GSU0538 HSP20 family protein YP_003139694.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_003139695.1 KEGG: dal:Dalk_4473 hypothetical protein YP_003139696.1 PFAM: protein of unknown function DUF1622; KEGG: asa:ASA_1145 hypothetical protein YP_003139697.1 PFAM: thiamineS protein; KEGG: scl:sce5755 hypothetical protein YP_003139698.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_003139699.1 KEGG: GA28568 gene product from transcript GA28568-RA YP_003139700.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce0260 hypothetical protein YP_003139701.1 KEGG: hypothetical protein YP_003139702.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_003139703.1 KEGG: hypothetical protein YP_003139704.1 PFAM: protein of unknown function DUF323; tyrosine protein kinase; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: dps:DP2315 hypothetical protein YP_003139706.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_4414 non-ribosomal peptide synthase YP_003139707.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: lpn:lpg1092 beta-phosphoglucomutase YP_003139708.1 KEGG: abm:p3ABSDF0014 methyltransferase cytosine (N4) specific (C2-like) YP_003139710.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_003139711.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sat:SYN_01251 cysteine desulfurase / selenocysteine lyase YP_003139712.1 KEGG: afr:AFE_1140 hypothetical protein YP_003139713.1 TIGRFAM: chaperone protein DnaK; PFAM: heat shock protein 70; KEGG: hypothetical protein YP_003139714.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: psa:PST_0206 probable uracil-DNA glycosylase YP_003139715.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dac:Daci_1781 ABC transporter YP_003139718.1 KEGG: mno:Mnod_8094 transposase IS4 family protein YP_003139720.1 PFAM: microcompartments protein; KEGG: mpt:Mpe_B0498 hypothetical protein YP_003139721.1 PFAM: TrkA-N domain protein; KEGG: dat:HRM2_16330 TrkA2 YP_003139722.1 KEGG: sat:SYN_01091 potassium uptake protein; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter YP_003139723.1 KEGG: aci:ACIAD3028 hypothetical protein YP_003139724.1 PFAM: glutaredoxin 2; KEGG: Os02g0767900; hypothetical protein YP_003139725.1 KEGG: har:HEAR1787 hypothetical protein YP_003139726.1 KEGG: hypothetical protein YP_003139727.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: sat:SYN_01015 single-strand nucleic acid-binding domain-containing protein YP_003139728.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_003139729.1 KEGG: Os03g0170500; hypothetical protein YP_003139730.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_003139731.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_003139732.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_003139733.1 PFAM: S-layer domain protein; KEGG: S-layer homology domain containing protein YP_003139734.1 PFAM: Ferritin Dps family protein; KEGG: reu:Reut_A2804 ferritin and Dps YP_003139735.1 TIGRFAM: phosphate binding protein; KEGG: nmu:Nmul_A0486 phosphate binding protein YP_003139736.1 PFAM: protein of unknown function DUF140; KEGG: ppabci14; ATP-binding cassette transporter subfamily I, member 14, ABC component protein PpABCI14; K02066 ABC transport system permease protein YP_003139737.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dvl:Dvul_2188 rod shape-determining protein RodA YP_003139738.1 PFAM: protein of unknown function DUF59; cobyrinic acid ac-diamide synthase; KEGG: afw:Anae109_2130 hypothetical protein YP_003139739.1 KEGG: ftn:FTN_0478 hypothetical protein YP_003139740.1 PFAM: Hpt domain protein; SMART: Hpt domain protein; KEGG: nis:NIS_0604 chemotaxis sensor histidine kinase CheA YP_003139741.1 PFAM: hypothetical protein; KEGG: pca:Pcar_2090 hypothetical protein YP_003139742.1 PFAM: radical SAM protein; KEGG: sde:Sde_2221 hypothetical protein YP_003139743.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: pca:Pcar_2089 methyltransferase YP_003139744.1 PFAM: GUN4 domain protein; KEGG: hypothetical protein YP_003139745.1 KEGG: hypothetical protein YP_003139746.1 Essential for efficient processing of 16S rRNA YP_003139747.1 PFAM: protein of unknown function DUF1092; KEGG: TAB2; PsaB RNA binding protein YP_003139748.1 KEGG: bph:Bphy_6436 Ap4A phosphorylase II YP_003139749.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: cytochrome c biogenesis protein family YP_003139750.1 KEGG: predicted protein; K03403 magnesium chelatase; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase YP_003139751.1 KEGG: tau:Tola_2631 RNA methyltransferase, TrmA family; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; methyltransferase small; (uracil-5)-methyltransferase YP_003139752.1 KEGG: dat:HRM2_02490 predicted anti-sigma regulatory factor RsbW1 (serine/threonine protein kinase) YP_003139754.1 KEGG: similar to golgi-associated microtubule-binding protein HOOK3 YP_003139756.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and subunit alphas YP_003139757.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_003139758.1 PFAM: C-type lectin domain protein; SMART: C-type lectin domain protein; KEGG: hypothetical LOC589466 YP_003139759.1 TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: rbo:A1I_07050 ComEC/Rec2 family protein YP_003139760.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: avi:Avi_3498 two component sensor kinase YP_003139761.1 PFAM: hypothetical protein; KEGG: gur:Gura_1562 hypothetical protein YP_003139762.1 PFAM: creatininase; KEGG: kpn:KPN_02038 creatininase YP_003139763.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: mch:Mchl_2030 peptidase S15 YP_003139764.1 PFAM: esterase; KEGG: dac:Daci_2656 esterase YP_003139765.1 PFAM: PRC-barrel domain protein; KEGG: hypothetical protein YP_003139769.1 with PsaB binds the primary electron donor of photosystem I, P700, and subsequent electron acceptors as part of photosystem I YP_003139770.1 with PsaA binds the primary electron donor of photosystem I, P700, and subsequent electron acceptors as part of photosystem I YP_003139774.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: hpp:HPP12_1468 hemolysin domain-containing protein YP_003139775.1 TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: abb:ABBFA_001780 chromate transport protein YP_003139776.1 TIGRFAM: glycine oxidase ThiO; PFAM: thiazole biosynthesis family protein; FAD dependent oxidoreductase; KEGG: thiamine biosynthesis protein YP_003139777.1 PFAM: glutathione S-transferase domain; KEGG: glutathione S-transferase, mitochondrial YP_003139778.1 PFAM: PAS fold-2 domain protein; Phytochrome central region domain protein; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; KEGG: rpd:RPD_2403 ATP-binding region, ATPase-like YP_003139779.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_1704 response regulator receiver YP_003139781.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA YP_003139782.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain protein; KEGG: predicted protein; K03671 thioredoxin 1 YP_003139784.1 KEGG: pca:Pcar_2202 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyltransferase 28 domain; glycosyl transferase family 28 YP_003139785.1 KEGG: sea:SeAg_B1520 inner membrane protein YP_003139786.1 KEGG: cvi:CV_2502 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: ATPase AAA YP_003139787.1 TIGRFAM: prevent-host-death family protein; KEGG: dal:Dalk_2398 prevent-host-death family protein YP_003139788.1 PFAM: protein of unknown function UPF0150; KEGG: dps:DP0409 hypothetical protein YP_003139789.1 KEGG: bba:Bd0699 Zn-dependent protease YP_003139790.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: bba:Bd0700 Zn-dependent protease YP_003139791.1 KEGG: rms:RMA_0739 hypothetical protein YP_003139792.1 PFAM: pentapeptide repeat protein; KEGG: gur:Gura_0761 pentapeptide repeat-containing protein YP_003139793.1 PFAM: carbonic anhydrase; KEGG: scl:sce6888 hypothetical protein YP_003139794.1 PFAM: transposase IS605 OrfB; transposase IS891/IS1136/IS1341 family; KEGG: ecm:EcSMS35_3236 IS200 transposase orfB YP_003139795.1 TIGRFAM: rod shape-determining protein MreD; KEGG: gbm:Gbem_2461 hypothetical protein YP_003139796.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_003139797.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: mxa:MXAN_6789 rod shape-determining protein MreB YP_003139798.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: hypothetical protein YP_003139799.1 TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: PpSig2; plastid sigma facor SIG2 YP_003139800.1 KEGG: gsu:GSU2000 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_003139801.1 PFAM: ferric-uptake regulator; KEGG: pca:Pcar_1952 negative regulator of ferric uptake YP_003139802.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway YP_003139803.1 KEGG: rpb:RPB_3716 phosphoribosylformylglycinamidine synthase I; TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase YP_003139804.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_003139805.1 PFAM: hypothetical protein; KEGG: rsq:Rsph17025_0562 translocation protein TolB YP_003139806.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: saz:Sama_2948 response regulator receiver protein YP_003139807.1 PFAM: protein of unknown function DUF344; KEGG: hha:Hhal_1873 hypothetical protein YP_003139808.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: afr:AFE_1342 UDP-glucose 4-epimerase YP_003139810.1 KEGG: scl:sce2433 hypothetical protein YP_003139811.1 may be involved in assembling and maintaining PSII complexes in the thylakoid membrane YP_003139812.1 may have a role in PSII core assembly, maintaining PSII dimers and donor side electron transfer YP_003139813.1 photosystem II reaction center subunit VI; associated with the reaction center of photosystem II YP_003139814.1 photosystem II reaction center subunit VI; associated with the reaction center of photosystem II YP_003139815.1 similar to Arabidopsis thaliana photosystem II assembly protein YP_003139816.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: Os08g0323400; hypothetical protein YP_003139817.1 PFAM: regulatory protein TetR; KEGG: rme:Rmet_4265 TetR family transcriptional regulator YP_003139818.1 KEGG: hypothetical protein; K00161 pyruvate dehydrogenase E1 component subunit alpha; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component YP_003139819.1 PFAM: Domain of unknown function DUF1815 YP_003139820.1 PFAM: heat shock protein 70; KEGG: tcx:Tcr_0870 heat shock protein HSP70 YP_003139821.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: pin:Ping_3063 transposase, IS605 OrfB family protein YP_003139822.1 PFAM: protein of unknown function UPF0182; KEGG: sun:SUN_1015 hypothetical protein YP_003139823.1 PFAM: pentapeptide repeat protein; TPR repeat-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: mms:mma_2224 pentapeptide repeat-containing protein YP_003139824.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: bid:Bind_3310 glutaredoxin 3 YP_003139825.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cja:CJA_0006 alpha-amylase, , amy13G YP_003139826.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: scl:sce1657 methyltransferase YP_003139828.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_003139829.1 KEGG: mno:Mnod_4696 hypothetical protein YP_003139830.1 KEGG: hypothetical LOC100053844 YP_003139831.1 PFAM: HicB family protein; KEGG: bhe:BH03220 hypothetical protein YP_003139832.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis YP_003139833.1 PFAM: aldehyde dehydrogenase; acyl-CoA reductase; KEGG: scl:sce5973 succinate-semialdehyde dehydrogenase (NAD(P)(+)) YP_003139834.1 PFAM: type II and III secretion system protein; Secretin/TonB short domain; KEGG: bba:Bd1597 general secretion pathway protein D YP_003139835.1 PFAM: fimbrial assembly family protein; KEGG: glo:Glov_1641 fimbrial assembly family protein YP_003139836.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: sat:SYN_01776 pili assembly protein YP_003139837.1 PFAM: extracellular solute-binding protein family 1; KEGG: cvi:CV_0262 sugar ABC transporter periplasmic protein YP_003139838.1 PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; KEGG: hypothetical protein YP_003139841.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_003139843.1 KEGG: YALI0C01155p YP_003139844.1 required for the assembly and function of the DNAX complex which are required for the assembly of the subunit beta onto primed DNA YP_003139845.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: gur:Gura_3419 magnesium and cobalt transport protein CorA YP_003139846.1 KEGG: ppd:Ppro_2027 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_003139847.1 PFAM: carbohydrate-selective porin OprB; S-layer domain protein YP_003139848.1 PFAM: protein of unknown function DUF1460; KEGG: sat:SYN_02612 cytoplasmic protein YP_003139849.1 PFAM: UspA domain protein; KEGG: pst:PSPTO_3520 universal stress protein YP_003139850.1 TIGRFAM: MoaD family protein; PFAM: thiamineS protein; KEGG: CNX7/SIR5; catalytic YP_003139851.1 PFAM: nitroreductase; KEGG: dol:Dole_2124 hypothetical protein YP_003139853.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pae:PA4925 hypothetical protein YP_003139854.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: mpo:Mpop_2793 phenazine biosynthesis protein PhzF family YP_003139855.1 PFAM: glycosyl transferase group 1; KEGG: dat:HRM2_19850 glycosyl transferase (group I) YP_003139856.1 KEGG: hypothetical protein YP_003139857.1 PFAM: peptidase M16 domain protein; KEGG: abo:ABO_2565 zinc protease YP_003139858.1 PFAM: protein of unknown function DUF1626; KEGG: hypothetical protein YP_003139859.1 PFAM: peptidase M16 domain protein; KEGG: mxa:MXAN_1141 M16 family peptidase YP_003139861.1 PFAM: phytase; KEGG: hch:HCH_03662 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) YP_003139862.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: ecp:ECP_0787 virulence protein GipA YP_003139863.1 TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: cvi:CV_2410 GTP-binding protein TypA YP_003139864.1 KEGG: afw:Anae109_1812 hypothetical protein YP_003139865.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nam:NAMH_1065 acetyltransferase, GNAT family YP_003139866.1 KEGG: mca:MCA1225 hypothetical protein YP_003139867.1 PFAM: KGK family protein YP_003139869.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: scl:sce8204 helicase YP_003139870.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: gbm:Gbem_3974 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_003139871.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce2332 hypothetical protein YP_003139873.1 PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Forkhead-associated protein; KEGG: lpc:LPC_0592 adenylate cyclase YP_003139874.1 PFAM: adenosine/AMP deaminase; KEGG: ank:AnaeK_2615 adenosine deaminase YP_003139875.1 TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cjr:CJE0220 DNA adenine methylase YP_003139876.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bpy:Bphyt_7274 transcriptional regulator, XRE family YP_003139877.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_003139878.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: rpi:Rpic_0704 peroxidase YP_003139879.1 PFAM: protein of unknown function DUF490; KEGG: predicted protein YP_003139881.1 PFAM: transaldolase; KEGG: afw:Anae109_0364 translaldolase YP_003139882.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gur:Gura_4293 two component transcriptional regulator YP_003139883.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_2006 integral membrane sensor signal transduction histidine kinase YP_003139891.1 KEGG: similar to gamma-aminobutyric acid A receptor, epsilon YP_003139894.1 PFAM: integrase family protein; KEGG: pin:Ping_2946 phage integrase family protein YP_003139895.1 KEGG: hypothetical LOC413161 YP_003139897.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003139899.1 KEGG: viral A-type inclusion protein YP_003139907.1 TIGRFAM: inorganic carbon transporter; PFAM: O-antigen polymerase; KEGG: dps:DPPB82 related to polysaccharide transport proteins YP_003139909.1 KEGG: hypothetical protein YP_003139910.1 KEGG: viral A-type inclusion protein YP_003139911.1 KEGG: msl:Msil_1540 nuclease YP_003139912.1 PFAM: peptidase membrane zinc metallopeptidase KEGG: hha:Hhal_0175 peptidase, membrane zinc metallopeptidase YP_003139913.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; ferredoxin; Forkhead-associated protein; KEGG: ppf:Pput_0337 oxidoreductase FAD-binding subunit YP_003139914.1 acts as a promotor non-specific transcription repressor YP_003139915.1 Decreases the phosphorylation of KaiC, a component of the main circadian regulator in cyanobacteria YP_003139916.1 PFAM: KaiA family protein YP_003139917.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; CBS domain containing protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: met:M446_6441 GAF sensor hybrid histidine kinase YP_003139919.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0261 sugar ABC transporter permease protein YP_003139920.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xau:Xaut_2381 glyoxalase/bleomycin resistance protein/dioxygenase YP_003139921.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_003139922.1 PFAM: hypothetical protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Tetratricopeptide domain protein; KEGG: SLEI family protein YP_003139923.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: noc:Noc_0989 hypothetical protein YP_003139924.1 PFAM: conserved hypothetical protein; KEGG: glo:Glov_1804 hypothetical protein YP_003139925.1 TIGRFAM: hopene-associated glycosyltransferase HpnB; PFAM: glycosyl transferase family 2; KEGG: bch:Bcen2424_5551 glycosyl transferase family protein YP_003139926.1 KEGG: psb:Psyr_3020 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003139927.1 PFAM: protein of unknown function DUF88; Cold-shock protein DNA-binding; KEGG: dal:Dalk_1950 cold-shock DNA-binding domain protein YP_003139928.1 PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: saz:Sama_2091 prolyl oligopeptidase YP_003139929.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: mca:MCA0659 hypothetical protein YP_003139930.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_003139931.1 PFAM: carbonic anhydrase; KEGG: CAH4; mitochondrial carbonic anhydrase, beta type YP_003139932.1 catalyzes the transfer of electrons from NADH to ubiquinone; NdhD3 is associated with a low CO2-induced uptake system YP_003139933.1 TIGRFAM: CO2 hydration protein YP_003139934.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_2130 cation transporting ATPase, E1-E2 type YP_003139935.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: plastid division protein FtsZ (AB032072); K03531 cell division protein FtsZ YP_003139936.1 PFAM: polypeptide-transport-associated domain protein FtsQ-type YP_003139937.1 KEGG: hypothetical protein; K03797 carboxyl-terminal processing protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003139938.1 PFAM: Ferritin Dps family protein; KEGG: nmu:Nmul_A2388 ferritin and Dps YP_003139939.1 PFAM: iron permease FTR1; KEGG: nmn:NMCC_0035 integral membrane protein YP_003139941.1 PFAM: protein of unknown function DUF55; KEGG: xop:PXO_02383 hypothetical protein YP_003139944.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_003139945.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: bba:Bd0339 RNA-binding protein YP_003139946.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: hypothetical protein; K00059 3-oxoacyl-(acyl-carrier-protein) reductase YP_003139947.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sme:SMc03268 peptide transport system ATP-binding ABC transporter protein YP_003139948.1 KEGG: similar to rCG61012 YP_003139949.1 PFAM: extracellular solute-binding protein family 5; KEGG: hap:HAPS_0936 periplasmic dipeptide transport protein DppA YP_003139950.1 KEGG: hypothetical protein YP_003139951.1 KEGG: asu:Asuc_0060 hypothetical protein YP_003139952.1 PFAM: glycosyl transferase group 1; KEGG: asu:Asuc_0059 glycosyl transferase group 1 YP_003139953.1 PFAM: glycosyl transferase group 1; KEGG: asu:Asuc_0058 glycosyl transferase group 1 YP_003139954.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: asu:Asuc_0057 ABC transporter YP_003139955.1 PFAM: aminoglycoside phosphotransferase; KEGG: asu:Asuc_0056 hypothetical protein YP_003139956.1 PFAM: cyclic nucleotide-binding; KEGG: bxe:Bxe_C0542 Crp/FNR family transcriptional regulator YP_003139957.1 KEGG: ank:AnaeK_0100 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003139958.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: pat:Patl_0418 DEAD/DEAH box helicase-like YP_003139960.1 PFAM: rhodanese domainprotein; SMART: Rhodanese domain protein; KEGG: sfu:Sfum_0511 rhodanese domain protein YP_003139961.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: bpy:Bphyt_4545 protein of unknown function DUF395 YeeE/YedE YP_003139962.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ppd:Ppro_1744 3-oxoacyl-(acyl-carrier-protein) reductase YP_003139963.1 KEGG: viral A-type inclusion protein YP_003139964.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2; KEGG: cvi:CV_3643 hypothetical protein YP_003139965.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: noc:Noc_0126 CheA signal transduction histidine kinase YP_003139966.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pol:Bpro_1137 response regulator receiver domain protein (CheY-like) YP_003139967.1 PFAM: CheW domain protein; SMART: CheW domain protein YP_003139968.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: mms:mma_2953 PilJ twitching motility protein YP_003139969.1 PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: hch:HCH_00541 chemotaxis protein histidine kinase-like kinase YP_003139970.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: APG2; APG2 (ALBINO AND PALE GREEN 2); K03118 sec-independent protein translocase protein TatC YP_003139971.1 PFAM: protein of unknown function DUF820; KEGG: scl:sce7446 hypothetical protein YP_003139972.1 KEGG: CPLD11; hypothetical protein YP_003139973.1 KEGG: similar to CG31550-PB, isoform B YP_003139975.1 KEGG: atc:AGR_C_2882 hypothetical protein YP_003139976.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_003139977.1 KEGG: nmn:NMCC_1162 DNA (cytosine-5-)-methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_003139979.1 PFAM: metallophosphoesterase; KEGG: bba:Bd2508 phosphoesterase YP_003139980.1 KEGG: nam:NAMH_0403 ribonucleoside-diphosphate reductase, subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; Ribonucleotide reductase large subunit domain protein YP_003139985.1 KEGG: scl:sce4372 hypothetical protein YP_003139986.1 PFAM: protein of unknown function DUF29; KEGG: noc:Noc_1894 hypothetical protein YP_003139987.1 PFAM: ribonucleotide reductase; KEGG: sun:SUN_2398 ribonucleotide-diphosphate reductase subunit beta YP_003139988.1 PFAM: aminotransferase class IV; KEGG: vfm:VFMJ11_1864 aminodeoxychorismate lyase YP_003139989.1 TIGRFAM: folate/biopterin transporter; PFAM: biopterin transport-related protein BT1; major facilitator superfamily MFS_1; KEGG: hypothetical protein YP_003139991.1 low-potential cytochrome c; with PsbO, PsbP, PsbQ, and PsbU makes up the oxygen-evolving complex of photosystem II YP_003139993.1 KEGG: ppd:Ppro_2108 hypothetical protein YP_003139994.1 KEGG: gur:Gura_0140 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: TRCF domain protein; DEAD/DEAH box helicase domain protein; transcription factor CarD; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein YP_003139995.1 KEGG: bpy:Bphyt_4006 hypothetical protein YP_003139997.1 PFAM: protein of unknown function DUF433 YP_003139998.1 PFAM: protein of unknown function UPF0150; KEGG: tbd:Tbd_1973 hypothetical protein YP_003139999.1 PFAM: YcfA family protein YP_003140000.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_1293 hypothetical protein YP_003140001.1 KEGG: hypothetical protein YP_003140002.1 catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis YP_003140006.1 KEGG: bcs:BCAN_A0810 hypothetical protein YP_003140007.1 PFAM: protein of unknown function UPF0150; KEGG: sit:TM1040_1684 hypothetical protein YP_003140008.1 KEGG: ajs:Ajs_3020 hypothetical protein YP_003140011.1 PFAM: photosystem II manganese-stabilizing protein PsbO; KEGG: psbO; psbO, PSII-O, OEE1, photosystem II polypeptide, oxygen evolving enhancer 1; K02716 photosystem II PsbO protein YP_003140012.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls the expression of genes coding cell surface proteins involved in motility and growth on nitrogen YP_003140015.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gur:Gura_2050 binding-protein-dependent transport systems inner membrane component YP_003140016.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_003140019.1 KEGG: hypothetical protein YP_003140020.1 PFAM: protein of unknown function DUF820; KEGG: mca:MCA1143 hypothetical protein YP_003140021.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_003140022.1 PFAM: Carotenoid oxygenase; KEGG: 9-cis-epoxycarotenoid dioxygenase, neoxanthin cleavage enzyme-like protein YP_003140023.1 PFAM: protein of unknown function DUF1611; KEGG: bvi:Bcep1808_4935 hypothetical protein YP_003140024.1 KEGG: hypothetical protein YP_003140025.1 PFAM: protein of unknown function DUF820; KEGG: pna:Pnap_0294 hypothetical protein YP_003140026.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: ppr:PBPRA1898 muconate cycloisomerase I YP_003140027.1 PFAM: DNA polymerase beta domain protein region; KEGG: gme:Gmet_0479 DNA polymerase, beta-like region YP_003140028.1 KEGG: hypothetical protein YP_003140031.1 KEGG: bra:BRADO5752 sensor histidine kinase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; response regulator receiver; hypothetical protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; ATP-binding region ATPase domain protein YP_003140032.1 KEGG: pca:Pcar_2565 two component signal transduction response regulator; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; response regulator receiver; hypothetical protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver; PAS domain containing protein YP_003140033.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: tgr:Tgr7_1115 response regulator receiver protein YP_003140034.1 KEGG: gsu:GSU2815 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_003140035.1 catalyzes the phosphorylation of NAD to NADP YP_003140036.1 KEGG: bra:BRADO5212 cyclase YP_003140037.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_003140038.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_003140039.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_003140041.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_003140042.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: hypothetical protein YP_003140043.1 KEGG: pca:Pcar_1058 rRNA methylase; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein YP_003140044.1 KEGG: nam:NAMH_0969 hypothetical protein YP_003140046.1 KEGG: afe:Lferr_0198 hypothetical protein YP_003140047.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_003140048.1 KEGG: hypothetical protein YP_003140049.1 PFAM: Na-Ca exchanger/integrin-beta4; peptidase M10A and M12B matrixin and adamalysin; SMART: Na-Ca exchanger/integrin-beta4; peptidase metallopeptidase; KEGG: azc:AZC_1301 endoglucanase YP_003140050.1 KEGG: dvm:DvMF_1012 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003140051.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: predicted protein YP_003140052.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_003140053.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine YP_003140054.1 PFAM: ribonuclease H; KEGG: sat:SYN_00291 ribonuclease H YP_003140055.1 KEGG: mca:MCA0589 nitrate transporter YP_003140056.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_003140057.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gur:Gura_3961 radical SAM domain-containing protein YP_003140058.1 PFAM: Proto-chlorophyllide reductase 57 kD subunit; KEGG: hha:Hhal_1636 light-independent protochlorophyllide reductase subunit B YP_003140060.1 KEGG: ecx:EcHS_A4046 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein YP_003140061.1 KEGG: predicted protein YP_003140062.1 PFAM: glycosyl transferase family 2; KEGG: bph:Bphy_0866 glycosyl transferase family protein YP_003140063.1 KEGG: bid:Bind_1207 hypothetical protein YP_003140064.1 PFAM: glycosyl transferase family 2; KEGG: gsu:GSU0623 glycosyl transferase, group 2 family protein YP_003140065.1 PFAM: protein of unknown function DUF1092; KEGG: TAB2; PsaB RNA binding protein YP_003140066.1 PFAM: sugar transferase; KEGG: gsu:GSU1846 glycosyl transferase domain-containing protein YP_003140067.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_003140069.1 Shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain YP_003140070.1 PFAM: protein of unknown function DUF820; KEGG: mca:MCA1143 hypothetical protein YP_003140071.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_003140072.1 PFAM: Mo-dependent nitrogenase family protein; KEGG: scl:sce7792 hypothetical protein YP_003140073.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pca:Pcar_2026 hypothetical protein YP_003140074.1 KEGG: pol:Bpro_3269 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003140075.1 KEGG: bja:blr2805 nitrate ABC transporter ATP-binding protein; TIGRFAM: nitrate ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003140076.1 TIGRFAM: nitrate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_b15170 nitrate transport permease protein NrtB YP_003140077.1 KEGG: avi:Avi_5897 ABC transporter substrate binding protein (nitrate) YP_003140078.1 PFAM: short-chain dehydrogenase/reductase SDR; class II aldolase/adducin family protein; KEGG: tdn:Suden_1970 short chain dehydrogenase YP_003140080.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: xfn:XfasM23_2061 phosphoesterase PA-phosphatase related YP_003140081.1 PFAM: cadmium resistance transporter; KEGG: hypothetical protein YP_003140082.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: sat:SYN_00180 HflC protein YP_003140083.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpb:RPB_3595 LysR family transcriptional regulator YP_003140085.1 PFAM: cadmium resistance transporter; KEGG: hypothetical protein YP_003140086.1 PFAM: protein of unknown function DUF202; KEGG: scl:sce7181 hypothetical protein YP_003140087.1 PFAM: PAS fold domain protein; SMART: PAS domain containing protein; KEGG: hha:Hhal_0057 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_003140088.1 PFAM: glutaredoxin; KEGG: fph:Fphi_1639 hypothetical protein YP_003140089.1 PFAM: TrkA-C domain protein; citrate transporter; KEGG: pca:Pcar_0606 membrane transport protein YP_003140090.1 PFAM: integral membrane protein TerC; KEGG: pca:Pcar_2785 membrane protein TerC YP_003140091.1 PFAM: cadmium resistance transporter; KEGG: hypothetical protein YP_003140092.1 KEGG: psa:PST_3158 preprotein translocase subunit SecA (ATPase, RNA helicase) YP_003140093.1 PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: lch:Lcho_1807 WD-40 repeat-containing protein YP_003140094.1 PFAM: glycosyl transferase group 1; KEGG: lch:Lcho_3084 glycosyl transferase group 1 YP_003140095.1 PFAM: TrkA-N domain protein; KEGG: mxa:MXAN_5903 TrkA family protein YP_003140096.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; KEGG: hypothetical protein; K03292 glycoside/pentoside/hexuronide:cation symporter, GPH family YP_003140097.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_003140098.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_003140099.1 KEGG: oan:Oant_4610 hypothetical protein YP_003140100.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_003140101.1 KEGG: TPP1; chloroplast thylakoid processing peptidase; K03100 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_003140102.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_003140104.1 PFAM: protein of unknown function Spy-related; KEGG: bba:Bd0880 periplasmic protein CpxP YP_003140105.1 PFAM: phospholipase/carboxylesterase; KEGG: net:Neut_1182 carboxylesterase YP_003140106.1 KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; hypothetical protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003140107.1 PFAM: transglutaminase; transglutaminase domain protein; SMART: transglutaminase; KEGG: pfo:Pfl01_0541 transglutaminase-like YP_003140109.1 PFAM: protein of unknown function DUF81; KEGG: xau:Xaut_3951 hypothetical protein YP_003140110.1 PFAM: protein of unknown function DUF541; KEGG: mes:Meso_2073 protein of unknown function DUF541 YP_003140111.1 PFAM: protein of unknown function DUF403; KEGG: dat:HRM2_13800 hypothetical protein YP_003140112.1 PFAM: glycosyl transferase group 1; KEGG: mfa:Mfla_1739 glycosyl transferase, group 1 YP_003140113.1 PFAM: metallophosphoesterase; KEGG: hypothetical protein YP_003140114.1 PFAM: protein of unknown function YGGT; KEGG: predicted protein; K02221 YggT family protein YP_003140115.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: dal:Dalk_3806 peptidase U61 LD-carboxypeptidase A YP_003140116.1 PFAM: LemA family protein; KEGG: shm:Shewmr7_0849 LemA family protein YP_003140117.1 PFAM: glycosyl transferase family 2; KEGG: afr:AFE_1776 glycosyl transferase YP_003140119.1 PFAM: protein of unknown function DUF490; KEGG: predicted protein YP_003140120.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: sfu:Sfum_3163 extracellular solute-binding protein, family 3 YP_003140121.1 KEGG: spe:Spro_1171 hypothetical protein YP_003140122.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: stage II sporulation D domain protein; KEGG: sat:SYN_02905 sporulation related protein YP_003140123.1 PFAM: lipolytic protein G-D-S-L family; KEGG: har:HEAR0752 hypothetical protein YP_003140125.1 KEGG: pin:Ping_3323 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003140126.1 PFAM: protein of unknown function UPF0150; KEGG: hpa:HPAG1_0204 hypothetical protein YP_003140127.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003142300.1 KEGG: hypothetical protein YP_003142302.1 KEGG: mno:Mnod_8094 transposase IS4 family protein YP_003142305.1 PFAM: PilT protein domain protein; KEGG: reh:PHG187 putative plasmid maintenance protein YP_003142307.1 PFAM: integrase family protein; KEGG: ent:Ent638_4229 phage integrase family protein YP_003142308.1 KEGG: sme:SMa1784 hypothetical protein YP_003142309.1 KEGG: tmz:Tmz1t_0517 hypothetical protein YP_003142310.1 TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: rpe:RPE_4100 death-on-curing family protein YP_003142311.1 TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: xau:Xaut_0218 putative addiction module antidote YP_003142316.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: pna:Pnap_5006 relaxase/mobilization nuclease family protein YP_003142317.1 PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: pna:Pnap_5006 relaxase/mobilization nuclease family protein YP_003142318.1 KEGG: hypothetical protein YP_003142320.1 KEGG: pfl:PFL_2449 hypothetical protein YP_003142321.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein YP_003142322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bba:Bd1728 ABC transporter, ATP-binding protein YP_003147824.1 PFAM: DNA polymerase beta domain protein region; KEGG: gur:Gura_1277 DNA polymerase beta subunit YP_003147825.1 PFAM: HNH endonuclease; KEGG: ecl:EcolC_3890 hypothetical protein YP_003147826.1 PFAM: GUN4 domain protein; KEGG: bph:Bphy_6797 hypothetical protein YP_003147828.1 SMART: ParB domain protein nuclease; KEGG: dal:Dalk_2606 hypothetical protein YP_003147829.1 KEGG: hypothetical protein YP_003147830.1 PFAM: regulatory protein TetR; KEGG: rle:RL1228 TetR family transcriptional regulator YP_003147834.1 PFAM: integrase family protein; KEGG: asa:ASA_P4G112 integrase/recombinase YP_003147835.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: scl:sce0462 hypothetical protein YP_003147836.1 KEGG: hypothetical protein YP_003147840.1 KEGG: GOLGB1; golgin B1, golgi integral membrane protein YP_003147841.1 KEGG: hypothetical protein YP_003147842.1 KEGG: nam:NAMH_1650 hypothetical protein YP_003147843.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_A0032 membrane-bound metal-dependent hydrolase YP_003147846.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: hpa:HPAG1_0201 putative transposase OrfB YP_003147847.1 PFAM: Peptidase M23; KEGG: ank:AnaeK_0799 peptidase M23 YP_003147848.1 PFAM: YcfA family protein; KEGG: rpb:RPB_4579 YcfA-like YP_003147849.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_0452 hypothetical protein YP_003147850.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: csa:Csal_3293 chromosome segregation ATPase YP_003147851.1 KEGG: similar to CG12909 CG12909-PA YP_003147853.1 KEGG: rfr:Rfer_2244 excinuclease ABC, C subunit YP_003147855.1 KEGG: scl:sce5012 hypothetical protein YP_003147856.1 KEGG: scl:sce5011 hypothetical protein YP_003147857.1 PFAM: transposase IS200-family protein; KEGG: pmr:PMI1001 IS element transposase YP_003147858.1 PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: eba:p1B202 transposase YP_003147859.1 PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: pna:Pnap_5006 relaxase/mobilization nuclease family protein YP_003147860.1 KEGG: dat:HRM2_18240 hypothetical protein YP_003147861.1 KEGG: eta:ETA_00550 hypothetical protein YP_003147862.1 PFAM: integrase family protein; KEGG: pin:Ping_2946 phage integrase family protein YP_003147863.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vfm:VFMJ11_A0700 spermine/spermidine acetyltransferase YP_003147864.1 KEGG: eta:ETA_00550 hypothetical protein