-- dump date 20120504_143141 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 255470000001 SEQ_END SEQ_END NC_007356.1 1395502 1395502 DR NC_007356.1; contig end 1395502..1395502 Dehalococcoides sp. CBDB1 YP_307196.1 CDS dnaA NC_007356.1 261 1595 D chromosome replication initiator DnaA 261..1595 Dehalococcoides sp. CBDB1 3623177 YP_307197.1 CDS obgE NC_007356.1 1926 3200 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1926..3200 Dehalococcoides sp. CBDB1 3623697 YP_307198.1 CDS nadD NC_007356.1 3188 3802 D nicotinate (nicotinamide) nucleotideadenylyltransferase 3188..3802 Dehalococcoides sp. CBDB1 3623767 YP_307199.1 CDS gyrB NC_007356.1 3884 5812 R DNA gyrase subunit B complement(3884..5812) Dehalococcoides sp. CBDB1 3623614 YP_307200.1 CDS relA NC_007356.1 6017 8203 R GTP pyrophosphokinase complement(6017..8203) Dehalococcoides sp. CBDB1 3623410 YP_307201.1 CDS hisS NC_007356.1 8331 9587 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 8331..9587 Dehalococcoides sp. CBDB1 3623900 YP_307202.1 CDS cbdb_A9 NC_007356.1 9584 10747 D hypothetical protein 9584..10747 Dehalococcoides sp. CBDB1 3623097 YP_307203.1 CDS cbdb_A10 NC_007356.1 10744 11367 R hypothetical protein complement(10744..11367) Dehalococcoides sp. CBDB1 3623436 YP_307204.1 CDS ilvE NC_007356.1 11400 12320 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(11400..12320) Dehalococcoides sp. CBDB1 3623333 YP_307205.1 CDS dinB NC_007356.1 12474 13646 R DNA polymerase IV complement(12474..13646) Dehalococcoides sp. CBDB1 3623176 YP_307206.1 CDS cbdb_A13 NC_007356.1 13646 13834 R hypothetical protein complement(13646..13834) Dehalococcoides sp. CBDB1 3622986 YP_307207.1 CDS pyrF NC_007356.1 13905 14717 R orotidine 5'-phosphate decarboxylase complement(13905..14717) Dehalococcoides sp. CBDB1 3623676 YP_307208.1 CDS cbdb_A15 NC_007356.1 14864 15559 D hypothetical protein 14864..15559 Dehalococcoides sp. CBDB1 3623851 YP_307209.1 CDS cbdb_A17 NC_007356.1 15598 16392 D lipoprotein 15598..16392 Dehalococcoides sp. CBDB1 3623198 YP_307210.1 CDS folC NC_007356.1 16438 17754 D folylpolyglutamate synthetase 16438..17754 Dehalococcoides sp. CBDB1 3622834 YP_307211.1 CDS cbdb_A19 NC_007356.1 17737 17952 R hypothetical protein complement(17737..17952) Dehalococcoides sp. CBDB1 3624070 YP_307212.1 CDS cbdb_A20 NC_007356.1 17966 18229 R hypothetical protein complement(17966..18229) Dehalococcoides sp. CBDB1 3624075 YP_307213.1 CDS dtd NC_007356.1 18532 18993 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 18532..18993 Dehalococcoides sp. CBDB1 3623185 YP_307214.1 CDS cbdb_A24 NC_007356.1 19045 19473 D FUR family transcriptional regulator 19045..19473 Dehalococcoides sp. CBDB1 3624097 YP_307215.1 CDS cbdb_A26 NC_007356.1 19527 20279 R hypothetical protein complement(19527..20279) Dehalococcoides sp. CBDB1 3624104 YP_307216.1 CDS cbdb_A25 NC_007356.1 20382 20768 D hypothetical protein 20382..20768 Dehalococcoides sp. CBDB1 3624100 YP_307217.1 CDS cbdb_A27 NC_007356.1 20850 20990 R hypothetical protein complement(20850..20990) Dehalococcoides sp. CBDB1 3623912 YP_307218.1 CDS comeC NC_007356.1 21047 23437 R DNA internalization-related competence protein,ComEC complement(21047..23437) Dehalococcoides sp. CBDB1 3623161 YP_307219.1 CDS comeA NC_007356.1 23434 24087 R competence protein ComEA complement(23434..24087) Dehalococcoides sp. CBDB1 3623160 YP_307220.1 CDS cbdb_A32 NC_007356.1 24111 24776 R potassium uptake protein, TrkA-like protein complement(24111..24776) Dehalococcoides sp. CBDB1 3623932 YP_307221.1 CDS cbdb_A33 NC_007356.1 24781 25185 R potassium uptake protein, fragment complement(24781..25185) Dehalococcoides sp. CBDB1 3623936 YP_307222.1 CDS cbdb_A34 NC_007356.1 25189 25617 R universal stress family protein complement(25189..25617) Dehalococcoides sp. CBDB1 3623939 YP_307223.1 CDS trkH NC_007356.1 25694 27139 R Trk system potassium uptake protein complement(25694..27139) Dehalococcoides sp. CBDB1 3624029 YP_307224.1 CDS trkA NC_007356.1 27143 28507 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(27143..28507) Dehalococcoides sp. CBDB1 3623956 YP_307225.1 CDS cbdb_B1 NC_007356.1 28511 28663 R hypothetical protein complement(28511..28663) Dehalococcoides sp. CBDB1 3622953 YP_307226.1 CDS cbdb_A39 NC_007356.1 28795 29745 R cation efflux family protein complement(28795..29745) Dehalococcoides sp. CBDB1 3622663 YP_307227.1 CDS cbdb_A40 NC_007356.1 29889 30518 D hypothetical protein 29889..30518 Dehalococcoides sp. CBDB1 3622667 YP_307228.1 CDS cbdb_A41 NC_007356.1 30511 31512 D phosphate transporter 30511..31512 Dehalococcoides sp. CBDB1 3622674 YP_307229.1 CDS gmk NC_007356.1 31509 32129 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(31509..32129) Dehalococcoides sp. CBDB1 3623609 YP_307230.1 CDS cbdb_A43 NC_007356.1 32107 32397 R hypothetical protein complement(32107..32397) Dehalococcoides sp. CBDB1 3622684 YP_307231.1 CDS cbdb_A45 NC_007356.1 32606 33454 D ferredoxin-NADP reductase 32606..33454 Dehalococcoides sp. CBDB1 3622686 YP_307232.1 CDS gltA NC_007356.1 33447 34844 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 33447..34844 Dehalococcoides sp. CBDB1 3623604 YP_307233.1 CDS cbdb_A48 NC_007356.1 34841 35053 R hypothetical protein complement(34841..35053) Dehalococcoides sp. CBDB1 3622693 YP_307234.1 CDS cbdb_A50 NC_007356.1 35163 35696 R hypothetical protein complement(35163..35696) Dehalococcoides sp. CBDB1 3622705 YP_307235.1 CDS cbdb_A52 NC_007356.1 35767 36375 R SAM-dependent methyltransferase complement(35767..36375) Dehalococcoides sp. CBDB1 3622714 YP_307236.1 CDS cbdb_A54 NC_007356.1 36386 36580 R hypothetical protein complement(36386..36580) Dehalococcoides sp. CBDB1 3622722 YP_307237.1 CDS cbdb_A55 NC_007356.1 36722 37093 D hypothetical protein 36722..37093 Dehalococcoides sp. CBDB1 3622728 YP_307238.1 CDS cbdb_A56 NC_007356.1 37229 37675 D redox family protein 37229..37675 Dehalococcoides sp. CBDB1 3622733 YP_307239.1 CDS cbdb_A58 NC_007356.1 37672 38775 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(37672..38775) Dehalococcoides sp. CBDB1 3622745 YP_307240.1 CDS cbdb_A59 NC_007356.1 38797 39039 R hypothetical protein complement(38797..39039) Dehalococcoides sp. CBDB1 3622748 YP_307241.1 CDS holA NC_007356.1 39161 40195 D DNA polymerase III delta subunit-like protein 39161..40195 Dehalococcoides sp. CBDB1 3623902 YP_307242.1 CDS cbdb_A62 NC_007356.1 40197 40808 D hypothetical protein 40197..40808 Dehalococcoides sp. CBDB1 3622789 YP_307243.1 CDS cbdb_A63 NC_007356.1 40843 41850 D transcriptional repressor, ROK family 40843..41850 Dehalococcoides sp. CBDB1 3622796 YP_307244.1 CDS alaS NC_007356.1 41966 44581 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 41966..44581 Dehalococcoides sp. CBDB1 3623265 YP_307245.1 CDS cbdb_A67 NC_007356.1 44628 45029 D hypothetical protein 44628..45029 Dehalococcoides sp. CBDB1 3622809 YP_307246.1 CDS tgt NC_007356.1 45051 46229 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 45051..46229 Dehalococcoides sp. CBDB1 3622864 YP_307247.1 CDS cbdb_A69 NC_007356.1 46324 47466 D iron-containing alcohol dehydrogenase 46324..47466 Dehalococcoides sp. CBDB1 3622816 YP_307248.1 CDS clpC NC_007356.1 51080 53554 D ATP-dependent Clp protease, ATP-binding subunit 51080..53554 Dehalococcoides sp. CBDB1 3623653 YP_307249.1 CDS radA NC_007356.1 53999 55393 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 53999..55393 Dehalococcoides sp. CBDB1 3623211 YP_307250.1 CDS ispD NC_007356.1 55380 56063 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 55380..56063 Dehalococcoides sp. CBDB1 3623990 YP_307251.1 CDS ispF NC_007356.1 56069 56542 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 56069..56542 Dehalococcoides sp. CBDB1 3623992 YP_307252.1 CDS cysS NC_007356.1 56546 57919 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 56546..57919 Dehalococcoides sp. CBDB1 3623169 YP_307253.1 CDS cbdb_B2 NC_007356.1 58013 58810 R recombinase complement(58013..58810) Dehalococcoides sp. CBDB1 3622961 YP_307254.1 CDS rdhD NC_007356.1 58960 59667 R DNA-binding response regulator complement(58960..59667) Dehalococcoides sp. CBDB1 3623113 YP_307255.1 CDS rdhC NC_007356.1 59661 61328 R sensor histidine kinase complement(59661..61328) Dehalococcoides sp. CBDB1 3623868 YP_307256.1 CDS rdhA NC_007356.1 61449 62939 D reductive dehalogenase 61449..62939 Dehalococcoides sp. CBDB1 3623480 YP_307257.1 CDS rdhB NC_007356.1 62977 63279 D reductive dehalogenase anchoring protein 62977..63279 Dehalococcoides sp. CBDB1 3623832 YP_307258.1 CDS rdhF NC_007356.1 64108 64872 D hypothetical protein 64108..64872 Dehalococcoides sp. CBDB1 3623122 YP_307259.1 CDS rdhC NC_007356.1 65088 66593 D sensor histidine kinase 65088..66593 Dehalococcoides sp. CBDB1 3623869 YP_307260.1 CDS rdhD NC_007356.1 66580 67281 D DNA-binding response regulator 66580..67281 Dehalococcoides sp. CBDB1 3623114 YP_307261.1 CDS rdhA NC_007356.1 67523 68989 D reductive dehalogenase 67523..68989 Dehalococcoides sp. CBDB1 3623481 YP_307262.1 CDS rdhB NC_007356.1 69010 69282 D reductive dehalogenase anchoring protein 69010..69282 Dehalococcoides sp. CBDB1 3623831 YP_307263.1 CDS cbdb_A86 NC_007356.1 70199 71053 D hypothetical protein 70199..71053 Dehalococcoides sp. CBDB1 3622890 YP_307264.1 CDS rdhF NC_007356.1 71328 72092 R hypothetical protein complement(71328..72092) Dehalococcoides sp. CBDB1 3623123 YP_307265.1 CDS rdhB NC_007356.1 72179 72475 R reductive dehalogenase anchoring protein complement(72179..72475) Dehalococcoides sp. CBDB1 3623834 YP_307266.1 CDS rdhA NC_007356.1 72513 74060 R reductive dehalogenase complement(72513..74060) Dehalococcoides sp. CBDB1 3623482 YP_307267.1 CDS rdhH NC_007356.1 74171 75037 R hypothetical protein complement(74171..75037) Dehalococcoides sp. CBDB1 3623418 YP_307268.1 CDS rdhD NC_007356.1 75349 76032 R DNA-binding response regulato complement(75349..76032) Dehalococcoides sp. CBDB1 3623115 YP_307269.1 CDS rdhC NC_007356.1 76013 77239 R sensor histidine kinase complement(76013..77239) Dehalococcoides sp. CBDB1 3623870 YP_307270.1 CDS cbdb_A92 NC_007356.1 77336 78820 R radical SAM protein complement(77336..78820) Dehalococcoides sp. CBDB1 3623110 YP_307271.1 CDS rdhI NC_007356.1 78843 79592 R radical SAM domain-containing protein complement(78843..79592) Dehalococcoides sp. CBDB1 3623427 YP_307272.1 CDS rdhH NC_007356.1 79589 80335 R hypothetical protein complement(79589..80335) Dehalococcoides sp. CBDB1 3623419 YP_307273.1 CDS rdhB NC_007356.1 80419 80688 R reductive dehalogenase anchoring protein complement(80419..80688) Dehalococcoides sp. CBDB1 3623836 YP_307274.1 CDS rdhA NC_007356.1 80710 82230 R reductive dehalogenase complement(80710..82230) Dehalococcoides sp. CBDB1 3623483 YP_307275.1 CDS rdhG NC_007356.1 82305 82928 R hypothetical protein complement(82305..82928) Dehalococcoides sp. CBDB1 3623129 YP_307276.1 CDS cbdb_A98 NC_007356.1 82995 83891 D sensor histidin kinase PAS domain-containing protein 82995..83891 Dehalococcoides sp. CBDB1 3622938 YP_307277.1 CDS cbdb_A99 NC_007356.1 83908 84186 D sensor histidin kinase ATP-binding subunit 83908..84186 Dehalococcoides sp. CBDB1 3622945 YP_307278.1 CDS rdhD NC_007356.1 84186 84872 D LuxR family transcriptional regulator 84186..84872 Dehalococcoides sp. CBDB1 3623872 YP_307279.1 CDS cbdb_B6 NC_007356.1 85242 85613 D hypothetical protein 85242..85613 Dehalococcoides sp. CBDB1 3623083 YP_307280.1 CDS cbdb_A101 NC_007356.1 85610 86506 D hypothetical protein 85610..86506 Dehalococcoides sp. CBDB1 3623628 YP_307281.1 CDS cbdb_A102 NC_007356.1 86503 88887 D hypothetical protein 86503..88887 Dehalococcoides sp. CBDB1 3623633 YP_307282.1 CDS cbdb_A103 NC_007356.1 89251 90405 D hypothetical protein 89251..90405 Dehalococcoides sp. CBDB1 3623639 YP_307283.1 CDS cbdb_B7 NC_007356.1 90541 90774 D hypothetical protein 90541..90774 Dehalococcoides sp. CBDB1 3623084 YP_307284.1 CDS cbdb_A104 NC_007356.1 90777 92714 D type I restriction-modification system methylation subunit 90777..92714 Dehalococcoides sp. CBDB1 3623560 YP_307285.1 CDS cbdb_A105 NC_007356.1 92701 93369 D type I restriction enzyme, specificity protein 92701..93369 Dehalococcoides sp. CBDB1 3623568 YP_307286.1 CDS cbdb_A106 NC_007356.1 93366 96350 D restriction enzyme type I helicase subunit 93366..96350 Dehalococcoides sp. CBDB1 3623574 YP_307287.1 CDS cbdb_A107 NC_007356.1 96347 97090 D zinc protease 96347..97090 Dehalococcoides sp. CBDB1 3623578 YP_307288.1 CDS cbdb_A108 NC_007356.1 97184 100285 D helicase 97184..100285 Dehalococcoides sp. CBDB1 3623587 YP_307289.1 CDS cbdb_A109 NC_007356.1 100287 103358 D hypothetical protein 100287..103358 Dehalococcoides sp. CBDB1 3622872 YP_307290.1 CDS cbdb_A111 NC_007356.1 103391 107662 D atp-dependent exoDNAse, exonuclease v 103391..107662 Dehalococcoides sp. CBDB1 3622879 YP_307291.1 CDS cbdb_A113 NC_007356.1 108042 108350 R hypothetical protein complement(108042..108350) Dehalococcoides sp. CBDB1 3622883 YP_307292.1 CDS mobA NC_007356.1 108539 109684 R molybdopterin-guanine dinucleotide biosynthesis protein A complement(108539..109684) Dehalococcoides sp. CBDB1 3623755 YP_307293.1 CDS cbdb_A116 NC_007356.1 109685 110374 R hypothetical protein complement(109685..110374) Dehalococcoides sp. CBDB1 3623345 YP_307294.1 CDS cbdb_A118 NC_007356.1 110397 113609 R molybdopterin oxidoreductase complement(110397..113609) Dehalococcoides sp. CBDB1 3624113 YP_307295.1 CDS cbdb_A120 NC_007356.1 113602 114783 R molybdopterin oxidoreductase, membrane subunit complement(113602..114783) Dehalococcoides sp. CBDB1 3624122 YP_307296.1 CDS cbdb_A121 NC_007356.1 114804 115742 R molybdopterin oxidoreductase, iron-sulfur binding subunit complement(114804..115742) Dehalococcoides sp. CBDB1 3624125 YP_307297.1 CDS cbdb_A122 NC_007356.1 116223 117209 D mrp family protein 116223..117209 Dehalococcoides sp. CBDB1 3624130 YP_307298.1 CDS cbdb_A123 NC_007356.1 117327 117692 R hypothetical protein complement(117327..117692) Dehalococcoides sp. CBDB1 3623351 YP_307299.1 CDS cbdb_A124 NC_007356.1 117838 118677 R degV family protein complement(117838..118677) Dehalococcoides sp. CBDB1 3624016 YP_307300.1 CDS cbdb_A126 NC_007356.1 118876 120180 D hypothetical protein 118876..120180 Dehalococcoides sp. CBDB1 3624052 YP_307301.1 CDS cbdb_A127 NC_007356.1 120243 122162 D endonuclease 120243..122162 Dehalococcoides sp. CBDB1 3624059 YP_307302.1 CDS hoxM NC_007356.1 122229 122711 R Ni/Fe hydrogenase maturation protease complement(122229..122711) Dehalococcoides sp. CBDB1 3623904 YP_307303.1 CDS hupL NC_007356.1 122714 124294 R Ni/Fe hydrogenase large subunit complement(122714..124294) Dehalococcoides sp. CBDB1 3622753 YP_307304.1 CDS hupS NC_007356.1 124325 125389 R Ni/Fe hydrogenase small subunit complement(124325..125389) Dehalococcoides sp. CBDB1 3622754 YP_307305.1 CDS cbdb_A131 NC_007356.1 125442 126245 R Ni/Fe hydrogenase, iron-sulfur cluster-binding subunit complement(125442..126245) Dehalococcoides sp. CBDB1 3623015 YP_307306.1 CDS cbdb_A133 NC_007356.1 126922 127995 R ABC transporter permease complement(126922..127995) Dehalococcoides sp. CBDB1 3623028 YP_307307.1 CDS cbdb_A134 NC_007356.1 127992 129050 R ABC transporter permease complement(127992..129050) Dehalococcoides sp. CBDB1 3623034 YP_307308.1 CDS cbdb_A136 NC_007356.1 129047 129913 R ABC transporter ATP-binding protein complement(129047..129913) Dehalococcoides sp. CBDB1 3623042 YP_307309.1 CDS cbdb_A137 NC_007356.1 129925 130584 R TetR family transcriptional regulator complement(129925..130584) Dehalococcoides sp. CBDB1 3623048 YP_307310.1 CDS cbdb_A138 NC_007356.1 130743 131285 R DJ-1 family protein complement(130743..131285) Dehalococcoides sp. CBDB1 3623741 YP_307311.1 CDS oadA NC_007356.1 131579 133327 D catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 131579..133327 Dehalococcoides sp. CBDB1 3623696 YP_307312.1 CDS accC NC_007356.1 133320 134816 D catalyzes the ATP-dependent carboxylation of a covalently attached biotin and the transfer of the carboxyl group to pyruvate forming oxaloacetate; pyruvate carboxylase subunit A 133320..134816 Dehalococcoides sp. CBDB1 3623091 YP_307313.1 CDS cbdb_A142 NC_007356.1 134813 135100 R hypothetical protein complement(134813..135100) Dehalococcoides sp. CBDB1 3622995 YP_307314.1 CDS cbdb_A143 NC_007356.1 135231 137033 R pyridine nucleotide-disulfide oxidoreductase complement(135231..137033) Dehalococcoides sp. CBDB1 3623001 YP_307315.1 CDS cbdb_B8 NC_007356.1 137386 137532 R hypothetical protein complement(137386..137532) Dehalococcoides sp. CBDB1 3623085 YP_307316.1 CDS cbdb_A145 NC_007356.1 137575 138606 D zinc-containing alcohol dehydrogenase 137575..138606 Dehalococcoides sp. CBDB1 3623009 YP_307317.1 CDS trpD NC_007356.1 138621 139745 D anthranilate phosphoribosyltransferase 138621..139745 Dehalococcoides sp. CBDB1 3623810 YP_307318.1 CDS cbdb_A148 NC_007356.1 139833 143021 R sensor histidine kinase complement(139833..143021) Dehalococcoides sp. CBDB1 3623321 YP_307319.1 CDS cobB NC_007356.1 143100 144491 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(143100..144491) Dehalococcoides sp. CBDB1 3623150 YP_307320.1 CDS cbdb_A150 NC_007356.1 144531 144947 R hypothetical protein complement(144531..144947) Dehalococcoides sp. CBDB1 3623852 YP_307321.1 CDS cbdb_A151 NC_007356.1 144940 145311 R DNA-binding response regulator complement(144940..145311) Dehalococcoides sp. CBDB1 3623856 YP_307322.1 CDS cbdb_A153 NC_007356.1 145392 145784 R response regulator complement(145392..145784) Dehalococcoides sp. CBDB1 3623508 YP_307323.1 CDS cbdb_A154 NC_007356.1 145929 146501 R rhomboid family protein complement(145929..146501) Dehalococcoides sp. CBDB1 3623513 YP_307324.1 CDS arcB NC_007356.1 146608 147567 D ornithine cyclodeaminase 146608..147567 Dehalococcoides sp. CBDB1 3623267 YP_307325.1 CDS cbdb_A156 NC_007356.1 147571 147783 R hypothetical protein complement(147571..147783) Dehalococcoides sp. CBDB1 3623515 YP_307326.1 CDS cbdb_A157 NC_007356.1 147873 148292 R general secretion pathway protein H complement(147873..148292) Dehalococcoides sp. CBDB1 3623518 YP_307327.1 CDS cbdb_A158 NC_007356.1 148425 149117 D DNA-binding response regulator 148425..149117 Dehalococcoides sp. CBDB1 3623067 YP_307328.1 CDS cbdb_A159 NC_007356.1 149120 150865 D sensor histidine kinase 149120..150865 Dehalococcoides sp. CBDB1 3623894 YP_307329.1 CDS mgsA NC_007356.1 151074 151508 D catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 151074..151508 Dehalococcoides sp. CBDB1 3623752 YP_307330.1 CDS pstS NC_007356.1 151578 152402 D phosphate ABC transporter substrate-binding protein 151578..152402 Dehalococcoides sp. CBDB1 3623737 YP_307331.1 CDS cbdb_A162 NC_007356.1 152477 153337 D phosphate ABC transporter permease 152477..153337 Dehalococcoides sp. CBDB1 3623499 YP_307332.1 CDS cbdb_A164 NC_007356.1 153330 154181 D phosphate ABC transporter permease 153330..154181 Dehalococcoides sp. CBDB1 3623504 YP_307333.1 CDS pstB NC_007356.1 154182 154937 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 154182..154937 Dehalococcoides sp. CBDB1 3623736 YP_307334.1 CDS phoU NC_007356.1 154950 155615 D phosphate transport system regulatory protein PhoU 154950..155615 Dehalococcoides sp. CBDB1 3623969 YP_307335.1 CDS arsC NC_007356.1 155617 156030 D arsenate reductase 155617..156030 Dehalococcoides sp. CBDB1 3622650 YP_307336.1 CDS hymA NC_007356.1 156473 156940 D [Fe] hydrogenase subunit HymA 156473..156940 Dehalococcoides sp. CBDB1 3622759 YP_307337.1 CDS hymB NC_007356.1 156942 158195 D [Fe] hydrogenase subunit HymB 156942..158195 Dehalococcoides sp. CBDB1 3622761 YP_307338.1 CDS hymC NC_007356.1 158183 159904 D [Fe] hydrogenase, large subunit HymC 158183..159904 Dehalococcoides sp. CBDB1 3623073 YP_307339.1 CDS hymD NC_007356.1 159944 160447 D [Fe] hydrogenase subunit HymD 159944..160447 Dehalococcoides sp. CBDB1 3623983 YP_307340.1 CDS cbdb_A174 NC_007356.1 160499 160666 R hypothetical protein complement(160499..160666) Dehalococcoides sp. CBDB1 3624060 YP_307341.1 CDS cbdb_A175 NC_007356.1 160674 161507 R lysophospholipase complement(160674..161507) Dehalococcoides sp. CBDB1 3624062 YP_307342.1 CDS cbdb_A176 NC_007356.1 161514 161774 R hypothetical protein complement(161514..161774) Dehalococcoides sp. CBDB1 3624063 YP_307343.1 CDS cbdb_A178 NC_007356.1 161998 162720 R hypothetical protein complement(161998..162720) Dehalococcoides sp. CBDB1 3624064 YP_307344.1 CDS cbdb_A180 NC_007356.1 162717 163610 R hypothetical protein complement(162717..163610) Dehalococcoides sp. CBDB1 3624065 YP_307345.1 CDS gly1 NC_007356.1 163704 164738 D threonine aldolase 163704..164738 Dehalococcoides sp. CBDB1 3623606 YP_307346.1 CDS cbdb_A182 NC_007356.1 164848 165342 D hypothetical protein 164848..165342 Dehalococcoides sp. CBDB1 3624066 YP_307347.1 CDS cbdb_A183 NC_007356.1 165506 166189 D hypothetical protein 165506..166189 Dehalococcoides sp. CBDB1 3624067 YP_307348.1 CDS cbdb_B9 NC_007356.1 166392 166817 D hypothetical protein 166392..166817 Dehalococcoides sp. CBDB1 3623086 YP_307349.1 CDS rdhD NC_007356.1 167058 167738 R DNA-binding response regulator complement(167058..167738) Dehalococcoides sp. CBDB1 3623885 YP_307350.1 CDS rdhC NC_007356.1 167719 169512 R sensor histidine kinase complement(167719..169512) Dehalococcoides sp. CBDB1 3623845 YP_307351.1 CDS cbdb_A186 NC_007356.1 169496 170095 R hypothetical protein complement(169496..170095) Dehalococcoides sp. CBDB1 3624068 YP_307352.1 CDS rdhA NC_007356.1 170338 171705 D reductive dehalogenase 170338..171705 Dehalococcoides sp. CBDB1 3623477 YP_307353.1 CDS rdhB NC_007356.1 171754 172041 D reductive dehalogenase anchoring protein 171754..172041 Dehalococcoides sp. CBDB1 3623829 YP_307354.1 CDS cbdb_B10 NC_007356.1 172045 172299 R hypothetical protein complement(172045..172299) Dehalococcoides sp. CBDB1 3622954 YP_307355.1 CDS cbdb_A189 NC_007356.1 172497 174182 D ATP-dependent RNA helicase, DEAD 172497..174182 Dehalococcoides sp. CBDB1 3624069 YP_307356.1 CDS cbdb_A190 NC_007356.1 174349 175314 D TerC family membrane protein 174349..175314 Dehalococcoides sp. CBDB1 3624071 YP_307357.1 CDS fdhE NC_007356.1 175495 176343 R formate dehydrogenase accessory protein complement(175495..176343) Dehalococcoides sp. CBDB1 3623287 YP_307358.1 CDS cbdb_A193 NC_007356.1 176344 177555 R formate dehydrogenase, membrane subunit complement(176344..177555) Dehalococcoides sp. CBDB1 3624072 YP_307359.1 CDS fdnG NC_007356.1 177643 180624 R formate dehydrogenase, major subunit complement(177643..180624) Dehalococcoides sp. CBDB1 3623288 YP_307360.1 CDS cbdb_A196 NC_007356.1 181003 181581 D methyltransferase 181003..181581 Dehalococcoides sp. CBDB1 3624073 YP_307361.1 CDS coaD NC_007356.1 181553 182032 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 181553..182032 Dehalococcoides sp. CBDB1 3623656 YP_307362.1 CDS fdx1 NC_007356.1 182121 182375 D ferredoxin, iron-sulfur cluster-binding protein 182121..182375 Dehalococcoides sp. CBDB1 3623289 YP_307363.1 CDS cbdb_A199 NC_007356.1 182486 182974 R colicin V production family protein complement(182486..182974) Dehalococcoides sp. CBDB1 3624074 YP_307364.1 CDS proC NC_007356.1 183068 183871 R pyrroline-5-carboxylate reductase complement(183068..183871) Dehalococcoides sp. CBDB1 3623733 YP_307365.1 CDS leuS NC_007356.1 183873 186314 R leucyl-tRNA synthetase complement(183873..186314) Dehalococcoides sp. CBDB1 3624004 YP_307366.1 CDS cbdb_A203 NC_007356.1 186489 187796 D hypothetical protein 186489..187796 Dehalococcoides sp. CBDB1 3624076 YP_307367.1 CDS cbdb_A205 NC_007356.1 187800 188330 D hypothetical protein 187800..188330 Dehalococcoides sp. CBDB1 3624077 YP_307368.1 CDS cbdb_A206 NC_007356.1 188488 188874 D hypothetical protein 188488..188874 Dehalococcoides sp. CBDB1 3624078 YP_307369.1 CDS cbdb_A207 NC_007356.1 189065 189340 D glutaredoxin family protein 189065..189340 Dehalococcoides sp. CBDB1 3624079 YP_307370.1 CDS cbdb_A208 NC_007356.1 189337 189840 D ferredoxin-thioredoxin reductase,catalyticsubunit 189337..189840 Dehalococcoides sp. CBDB1 3624080 YP_307371.1 CDS cbdb_A209 NC_007356.1 189932 190843 D hypothetical protein 189932..190843 Dehalococcoides sp. CBDB1 3624081 YP_307372.1 CDS cbdb_A212 NC_007356.1 190856 191863 R glycosyltransferase complement(190856..191863) Dehalococcoides sp. CBDB1 3624082 YP_307373.1 CDS cbdb_A213 NC_007356.1 192154 192987 D LmbE-like family protein 192154..192987 Dehalococcoides sp. CBDB1 3624083 YP_307374.1 CDS cbdb_A214 NC_007356.1 193064 193204 D hypothetical protein 193064..193204 Dehalococcoides sp. CBDB1 3624084 YP_307375.1 CDS cbdb_A215 NC_007356.1 193259 194233 D oxidoreductase, aldo reductase 193259..194233 Dehalococcoides sp. CBDB1 3624085 YP_307376.1 CDS cbdb_A217 NC_007356.1 194230 194583 R DNA-binding protein complement(194230..194583) Dehalococcoides sp. CBDB1 3624086 YP_307377.1 CDS cbdb_A218 NC_007356.1 194735 195229 D PBS lyase 194735..195229 Dehalococcoides sp. CBDB1 3624087 YP_307378.1 CDS kamA NC_007356.1 195748 197874 D L-lysine 2,3-aminomutase 195748..197874 Dehalococcoides sp. CBDB1 3623995 YP_307379.1 CDS cbdb_A222 NC_007356.1 197956 199236 R serine protease inhibitor family protein complement(197956..199236) Dehalococcoides sp. CBDB1 3624088 YP_307380.1 CDS cbdb_A225 NC_007356.1 199422 200009 D Hly-III family-like protein 199422..200009 Dehalococcoides sp. CBDB1 3624089 YP_307381.1 CDS cbdb_A226 NC_007356.1 200006 201997 R ABC transporter ATP-binding protein complement(200006..201997) Dehalococcoides sp. CBDB1 3624090 YP_307382.1 CDS cbdb_A227 NC_007356.1 202131 202988 R hypothetical protein complement(202131..202988) Dehalococcoides sp. CBDB1 3624091 YP_307383.1 CDS cbdb_A228 NC_007356.1 203114 204253 R hypothetical protein complement(203114..204253) Dehalococcoides sp. CBDB1 3624092 YP_307384.1 CDS cbdb_A229 NC_007356.1 204507 204848 R hypothetical protein complement(204507..204848) Dehalococcoides sp. CBDB1 3624093 YP_307385.1 CDS cbdb_A230 NC_007356.1 204861 205118 R hypothetical protein complement(204861..205118) Dehalococcoides sp. CBDB1 3624094 YP_307386.1 CDS cbdb_A232 NC_007356.1 205206 205532 R hypothetical protein complement(205206..205532) Dehalococcoides sp. CBDB1 3624095 YP_307387.1 CDS rdhD NC_007356.1 205920 206597 R DNA-binding response regulator complement(205920..206597) Dehalococcoides sp. CBDB1 3623886 YP_307388.1 CDS rdhC NC_007356.1 206594 207874 R sensor histidine kinase complement(206594..207874) Dehalococcoides sp. CBDB1 3623846 YP_307389.1 CDS cbdb_A237 NC_007356.1 207922 208149 D hypothetical protein 207922..208149 Dehalococcoides sp. CBDB1 3624096 YP_307390.1 CDS rdhA NC_007356.1 208160 209704 D reductive dehalogenase 208160..209704 Dehalococcoides sp. CBDB1 3623478 YP_307391.1 CDS rdhB NC_007356.1 209728 210000 D reductive dehalogenase anchoring protein 209728..210000 Dehalococcoides sp. CBDB1 3623830 YP_307392.1 CDS rdhD NC_007356.1 210286 210969 R DNA-binding response regulator complement(210286..210969) Dehalococcoides sp. CBDB1 3623887 YP_307393.1 CDS rdhC NC_007356.1 210950 212773 R sensor histidine kinase complement(210950..212773) Dehalococcoides sp. CBDB1 3623847 YP_307394.1 CDS cbdb_A242 NC_007356.1 212775 213392 R hypothetical protein complement(212775..213392) Dehalococcoides sp. CBDB1 3624098 YP_307395.1 CDS rdhA NC_007356.1 213820 215295 D reductive dehalogenase 213820..215295 Dehalococcoides sp. CBDB1 3623479 YP_307396.1 CDS rdhB NC_007356.1 215348 215626 D reductive dehalogenase anchoring protein 215348..215626 Dehalococcoides sp. CBDB1 3623837 YP_307397.1 CDS cprC NC_007356.1 215811 217034 D membrane bound regulatory protein 215811..217034 Dehalococcoides sp. CBDB1 3623164 YP_307398.1 CDS rdhH NC_007356.1 217167 217922 D hypothetical protein 217167..217922 Dehalococcoides sp. CBDB1 3623417 YP_307399.1 CDS rdhI NC_007356.1 217919 218665 D radical SAM domain-containing protein 217919..218665 Dehalococcoides sp. CBDB1 3623423 YP_307400.1 CDS cbdb_A247 NC_007356.1 218670 219383 D precorrin methylase 218670..219383 Dehalococcoides sp. CBDB1 3624099 YP_307401.1 CDS rdhI NC_007356.1 219395 220231 D radical SAM domain-containing protein 219395..220231 Dehalococcoides sp. CBDB1 3623424 YP_307402.1 CDS rdhF NC_007356.1 220262 221041 D hypothetical protein 220262..221041 Dehalococcoides sp. CBDB1 3623119 YP_307403.1 CDS rdhI NC_007356.1 221047 221787 D radical SAM domain-containing protein 221047..221787 Dehalococcoides sp. CBDB1 3623425 YP_307404.1 CDS nrd NC_007356.1 221796 223553 D ribonucleotide reductase 221796..223553 Dehalococcoides sp. CBDB1 3623683 YP_307405.1 CDS cobA NC_007356.1 223546 224085 D cob(I)alamin adenosyltransferase 223546..224085 Dehalococcoides sp. CBDB1 3623660 YP_307406.1 CDS cobD NC_007356.1 224102 225058 D cobalamin biosynthesis protein 224102..225058 Dehalococcoides sp. CBDB1 3623153 YP_307407.1 CDS cbdb_A255 NC_007356.1 225073 225333 D hypothetical protein 225073..225333 Dehalococcoides sp. CBDB1 3624101 YP_307408.1 CDS cbdb_A257 NC_007356.1 225348 226499 D cysteine desulfurase 225348..226499 Dehalococcoides sp. CBDB1 3624102 YP_307409.1 CDS rdhF NC_007356.1 226493 227317 D hypothetical protein 226493..227317 Dehalococcoides sp. CBDB1 3623120 YP_307410.1 CDS cbdb_A259 NC_007356.1 227314 228873 D precorrin methylase 227314..228873 Dehalococcoides sp. CBDB1 3624103 YP_307411.1 CDS cbdb_A260 NC_007356.1 229294 229713 R hypothetical protein complement(229294..229713) Dehalococcoides sp. CBDB1 3624105 YP_307412.1 CDS cbdb_A261 NC_007356.1 229939 230106 R hypothetical protein complement(229939..230106) Dehalococcoides sp. CBDB1 3624106 YP_307413.1 CDS cbdb_A262 NC_007356.1 230240 230983 D transcriptional regulator cNTP-binding, Crp 230240..230983 Dehalococcoides sp. CBDB1 3624107 YP_307414.1 CDS cbdb_A263 NC_007356.1 231310 232137 R patatin-like phospholipase complement(231310..232137) Dehalococcoides sp. CBDB1 3623907 YP_307415.1 CDS rimL NC_007356.1 232115 232750 R acetyltransferase complement(232115..232750) Dehalococcoides sp. CBDB1 3623380 YP_307416.1 CDS cbdb_A266 NC_007356.1 232755 234347 R hypothetical protein complement(232755..234347) Dehalococcoides sp. CBDB1 3623908 YP_307417.1 CDS cbdb_A267 NC_007356.1 234344 234943 R hypothetical protein complement(234344..234943) Dehalococcoides sp. CBDB1 3623909 YP_307418.1 CDS cbdb_A268 NC_007356.1 235013 236218 R hypothetical protein complement(235013..236218) Dehalococcoides sp. CBDB1 3623910 YP_307419.1 CDS cbdb_A269 NC_007356.1 236343 236966 D amino acid transporter LysE 236343..236966 Dehalococcoides sp. CBDB1 3623911 YP_307420.1 CDS cbdb_A270 NC_007356.1 236993 238018 D histone deacetylase 236993..238018 Dehalococcoides sp. CBDB1 3623913 YP_307421.1 CDS cbdb_A271 NC_007356.1 237992 238927 R cation efflux family protein complement(237992..238927) Dehalococcoides sp. CBDB1 3623914 YP_307422.1 CDS secF NC_007356.1 238950 239855 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(238950..239855) Dehalococcoides sp. CBDB1 3623784 YP_307423.1 CDS secD NC_007356.1 239848 241197 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(239848..241197) Dehalococcoides sp. CBDB1 3623782 YP_307424.1 CDS cbdb_A275 NC_007356.1 241211 242707 R poly(A) polymerase complement(241211..242707) Dehalococcoides sp. CBDB1 3623915 YP_307425.1 CDS cbdb_A276 NC_007356.1 242867 243268 R DNA-binding protein complement(242867..243268) Dehalococcoides sp. CBDB1 3623916 YP_307426.1 CDS priA NC_007356.1 243528 245975 R primosomal protein N' complement(243528..245975) Dehalococcoides sp. CBDB1 3623730 YP_307427.1 CDS rplS NC_007356.1 245996 246391 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(245996..246391) Dehalococcoides sp. CBDB1 3623364 YP_307428.1 CDS trmD NC_007356.1 246515 247261 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(246515..247261) Dehalococcoides sp. CBDB1 3624030 YP_307429.1 CDS cbdb_A280 NC_007356.1 247460 247870 D hypothetical protein 247460..247870 Dehalococcoides sp. CBDB1 3623917 YP_307430.1 CDS mraW NC_007356.1 247877 248926 D S-adenosyl-methyltransferase MraW 247877..248926 Dehalococcoides sp. CBDB1 3623756 YP_307431.1 CDS ftsA NC_007356.1 248997 250223 D cell division protein FtsA 248997..250223 Dehalococcoides sp. CBDB1 3622840 YP_307432.1 CDS ftsZ NC_007356.1 250263 251393 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 250263..251393 Dehalococcoides sp. CBDB1 3622844 YP_307433.1 CDS nrdR NC_007356.1 251537 252064 D transcriptional regulator NrdR 251537..252064 Dehalococcoides sp. CBDB1 3623918 YP_307434.1 CDS nrdA NC_007356.1 252381 254666 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 252381..254666 Dehalococcoides sp. CBDB1 3623685 YP_307435.1 CDS cbdb_A288 NC_007356.1 254660 254779 D hypothetical protein 254660..254779 Dehalococcoides sp. CBDB1 3623919 YP_307436.1 CDS cbdb_A289 NC_007356.1 254896 255480 D hypothetical protein 254896..255480 Dehalococcoides sp. CBDB1 3623920 YP_307437.1 CDS cbdb_A290 NC_007356.1 255449 257083 D radical SAM domain-containing protein 255449..257083 Dehalococcoides sp. CBDB1 3623921 YP_307438.1 CDS cbdb_A292 NC_007356.1 257132 257581 R GatB domain-containing protein complement(257132..257581) Dehalococcoides sp. CBDB1 3623922 YP_307439.1 CDS rpsU NC_007356.1 257583 257777 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(257583..257777) Dehalococcoides sp. CBDB1 3623776 YP_307440.1 CDS cbdb_A294 NC_007356.1 257949 259712 R hypothetical protein complement(257949..259712) Dehalococcoides sp. CBDB1 3623923 YP_307441.1 CDS cbdb_A296 NC_007356.1 259975 261192 R hypothetical protein complement(259975..261192) Dehalococcoides sp. CBDB1 3623924 YP_307442.1 CDS cbdb_A297 NC_007356.1 261227 261610 R hypothetical protein complement(261227..261610) Dehalococcoides sp. CBDB1 3623925 YP_307443.1 CDS cbdb_A298 NC_007356.1 261697 262392 D hypothetical protein 261697..262392 Dehalococcoides sp. CBDB1 3623926 YP_307444.1 CDS cbdb_A299 NC_007356.1 262669 262815 D hypothetical protein 262669..262815 Dehalococcoides sp. CBDB1 3623927 YP_307445.1 CDS cbdb_A300 NC_007356.1 263356 264015 R hypothetical protein complement(263356..264015) Dehalococcoides sp. CBDB1 3623928 YP_307446.1 CDS cbdb_A302 NC_007356.1 264155 264259 R hypothetical protein complement(264155..264259) Dehalococcoides sp. CBDB1 3623929 YP_307447.1 CDS cbdb_A303 NC_007356.1 264305 264457 D hypothetical protein 264305..264457 Dehalococcoides sp. CBDB1 3623930 YP_307448.1 CDS prc NC_007356.1 264644 265777 D carboxyl-terminal protease 264644..265777 Dehalococcoides sp. CBDB1 3623727 YP_307449.1 CDS pheS NC_007356.1 265893 266933 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 265893..266933 Dehalococcoides sp. CBDB1 3623967 YP_307450.1 CDS pheT NC_007356.1 266935 269364 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 266935..269364 Dehalococcoides sp. CBDB1 3623968 YP_307451.1 CDS ppa NC_007356.1 269454 270089 D catalyzes the hydrolysis of pyrophosphate; inorganic pyrophosphatase 269454..270089 Dehalococcoides sp. CBDB1 3623724 YP_307452.1 CDS proS NC_007356.1 270155 271864 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(270155..271864) Dehalococcoides sp. CBDB1 3623734 YP_307453.1 CDS ispG NC_007356.1 271958 273004 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(271958..273004) Dehalococcoides sp. CBDB1 3623993 YP_307454.1 CDS cbdb_A313 NC_007356.1 273040 274077 R membrane-associated zinc metalloprotease complement(273040..274077) Dehalococcoides sp. CBDB1 3623931 YP_307455.1 CDS dxr NC_007356.1 274078 275211 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(274078..275211) Dehalococcoides sp. CBDB1 3623187 YP_307456.1 CDS cdsA NC_007356.1 275196 275999 R phosphatidate cytidylyltransferase complement(275196..275999) Dehalococcoides sp. CBDB1 3622775 YP_307457.1 CDS uppS NC_007356.1 276003 276713 R undecaprenyl diphosphate synthase complement(276003..276713) Dehalococcoides sp. CBDB1 3623823 YP_307458.1 CDS frr NC_007356.1 276778 277335 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(276778..277335) Dehalococcoides sp. CBDB1 3622839 YP_307459.1 CDS pyrH NC_007356.1 277337 278062 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(277337..278062) Dehalococcoides sp. CBDB1 3623678 YP_307460.1 CDS tsf NC_007356.1 278077 278580 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(278077..278580) Dehalococcoides sp. CBDB1 3623819 YP_307461.1 CDS rpsB NC_007356.1 278605 279342 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(278605..279342) Dehalococcoides sp. CBDB1 3623796 YP_307462.1 CDS purQ NC_007356.1 279527 280294 R phosphoribosylformylglycinamidine synthase I complement(279527..280294) Dehalococcoides sp. CBDB1 3623670 YP_307463.1 CDS purL NC_007356.1 280301 283162 R phosphoribosylformylglycinamidine synthase II complement(280301..283162) Dehalococcoides sp. CBDB1 3623668 YP_307464.1 CDS cbdb_A327 NC_007356.1 283166 284047 R with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS complement(283166..284047) Dehalococcoides sp. CBDB1 3623933 YP_307465.1 CDS cbdb_A328 NC_007356.1 284253 284630 D (Fe-S)-binding protein 284253..284630 Dehalococcoides sp. CBDB1 3623934 YP_307466.1 CDS cbdb_B11 NC_007356.1 284811 285581 D hypothetical protein 284811..285581 Dehalococcoides sp. CBDB1 3622955 YP_307467.1 CDS cbdb_A329 NC_007356.1 285660 286805 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase complement(285660..286805) Dehalococcoides sp. CBDB1 3623935 YP_307468.1 CDS cbdb_A331 NC_007356.1 287067 287891 D tetrapyrrole methylase 287067..287891 Dehalococcoides sp. CBDB1 3623937 YP_307469.1 CDS cbdb_A332 NC_007356.1 287916 288131 D hypothetical protein 287916..288131 Dehalococcoides sp. CBDB1 3623938 YP_307470.1 CDS metG NC_007356.1 288140 289801 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 288140..289801 Dehalococcoides sp. CBDB1 3623747 YP_307471.1 CDS hepT NC_007356.1 289817 290797 D heptaprenyl diphosphate synthase component II 289817..290797 Dehalococcoides sp. CBDB1 3623615 YP_307472.1 CDS ftsH NC_007356.1 291134 292960 R ATP-dependent metalloprotease FtsH complement(291134..292960) Dehalococcoides sp. CBDB1 3622842 YP_307473.1 CDS cbdb_A340 NC_007356.1 293020 293772 R AP endonuclease complement(293020..293772) Dehalococcoides sp. CBDB1 3623940 YP_307474.1 CDS cbdb_A342 NC_007356.1 293969 294313 D iojap family protein 293969..294313 Dehalococcoides sp. CBDB1 3623941 YP_307475.1 CDS ndk NC_007356.1 294314 294742 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(294314..294742) Dehalococcoides sp. CBDB1 3623769 YP_307476.1 CDS cbdb_A344 NC_007356.1 294752 296122 R glycoprotease complement(294752..296122) Dehalococcoides sp. CBDB1 3623942 YP_307477.1 CDS cbdb_A346 NC_007356.1 296100 296591 R hypothetical protein complement(296100..296591) Dehalococcoides sp. CBDB1 3623943 YP_307478.1 CDS thiL NC_007356.1 296588 297598 R thiamine-monophosphate kinase complement(296588..297598) Dehalococcoides sp. CBDB1 3623353 YP_307479.1 CDS cbdb_A349 NC_007356.1 297890 298666 D ubiquinone/menaquinone biosynthesis methlytransferase UbiE 297890..298666 Dehalococcoides sp. CBDB1 3623944 YP_307480.1 CDS cbdb_A350 NC_007356.1 298668 299435 D ubiquinone/menaquinone biosynthesis methlytransferase UbiE 298668..299435 Dehalococcoides sp. CBDB1 3623945 YP_307481.1 CDS aroB NC_007356.1 299437 300531 D 3-dehydroquinate synthase 299437..300531 Dehalococcoides sp. CBDB1 3623548 YP_307482.1 CDS menA NC_007356.1 300515 301435 D 1,4-dihydroxy-2-naphthoateoctaprenyltransferase 300515..301435 Dehalococcoides sp. CBDB1 3623746 YP_307483.1 CDS cbdb_A353 NC_007356.1 301435 302037 D SAM-dependent methyltransferase 301435..302037 Dehalococcoides sp. CBDB1 3623946 YP_307484.1 CDS cbdb_A354 NC_007356.1 302165 302896 D serine/threonine protein phosphatase 302165..302896 Dehalococcoides sp. CBDB1 3623947 YP_307485.1 CDS ksgA NC_007356.1 302916 303791 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 302916..303791 Dehalococcoides sp. CBDB1 3623997 YP_307486.1 CDS ispE NC_007356.1 303785 304639 D 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 303785..304639 Dehalococcoides sp. CBDB1 3623991 YP_307487.1 CDS cbdb_A358 NC_007356.1 304713 305192 D rubrerythrin 304713..305192 Dehalococcoides sp. CBDB1 3623948 YP_307488.1 CDS cbdb_A359 NC_007356.1 305271 305510 R hypothetical protein complement(305271..305510) Dehalococcoides sp. CBDB1 3623949 YP_307489.1 CDS cbdb_A360 NC_007356.1 305596 306402 R cation channel family protein complement(305596..306402) Dehalococcoides sp. CBDB1 3623950 YP_307490.1 CDS cbdb_A361 NC_007356.1 306389 307645 R poly(A) polymerase complement(306389..307645) Dehalococcoides sp. CBDB1 3623951 YP_307491.1 CDS nodI NC_007356.1 307726 308643 D ABC transporter ATP-binding protein 307726..308643 Dehalococcoides sp. CBDB1 3623681 YP_307492.1 CDS nodJ NC_007356.1 308640 309407 D ABC transporter permease 308640..309407 Dehalococcoides sp. CBDB1 3623682 YP_307493.1 CDS cbdb_A364 NC_007356.1 309457 310008 D hypothetical protein 309457..310008 Dehalococcoides sp. CBDB1 3623952 YP_307494.1 CDS cbdb_A365 NC_007356.1 310005 310478 D deoxycytidylate deaminase 310005..310478 Dehalococcoides sp. CBDB1 3623953 YP_307495.1 CDS cbdb_A367 NC_007356.1 310566 311471 D hypothetical protein 310566..311471 Dehalococcoides sp. CBDB1 3623954 YP_307496.1 CDS dut NC_007356.1 311542 312054 R catalyzes the formation of UMP from UTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(311542..312054) Dehalococcoides sp. CBDB1 3623186 YP_307497.1 CDS cbdb_B12 NC_007356.1 312268 312555 D hypothetical protein 312268..312555 Dehalococcoides sp. CBDB1 3622956 YP_307498.1 CDS cbdb_A369 NC_007356.1 312643 313404 R amino acid ABC transporter ATP-binding protein complement(312643..313404) Dehalococcoides sp. CBDB1 3623955 YP_307499.1 CDS cbdb_A370 NC_007356.1 313404 314225 R amino acid ABC transporter permease complement(313404..314225) Dehalococcoides sp. CBDB1 3623957 YP_307500.1 CDS cbdb_A371 NC_007356.1 314278 315051 R amino acid ABC transporter substrate-binding protein complement(314278..315051) Dehalococcoides sp. CBDB1 3623958 YP_307501.1 CDS cbdb_B13 NC_007356.1 315079 315228 R hypothetical protein complement(315079..315228) Dehalococcoides sp. CBDB1 3622957 YP_307502.1 CDS degV NC_007356.1 315251 316090 R degV family protein complement(315251..316090) Dehalococcoides sp. CBDB1 3623175 YP_307503.1 CDS cbdb_A373 NC_007356.1 316267 316407 D hypothetical protein 316267..316407 Dehalococcoides sp. CBDB1 3623959 YP_307504.1 CDS corA NC_007356.1 316861 317811 D magnesium and cobalt transport protein 316861..317811 Dehalococcoides sp. CBDB1 3623162 YP_307505.1 CDS cbdb_A376 NC_007356.1 317833 318492 D hypothetical protein 317833..318492 Dehalococcoides sp. CBDB1 3623960 YP_307506.1 CDS cbdb_A377 NC_007356.1 318513 319289 D hypothetical protein 318513..319289 Dehalococcoides sp. CBDB1 3623961 YP_307507.1 CDS cbdb_A378 NC_007356.1 319292 319795 D hypothetical protein 319292..319795 Dehalococcoides sp. CBDB1 3623962 YP_307508.1 CDS cbdb_A380 NC_007356.1 319832 321370 D carbohydrate kinase 319832..321370 Dehalococcoides sp. CBDB1 3623592 YP_307509.1 CDS cbdb_A381 NC_007356.1 321374 322165 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 321374..322165 Dehalococcoides sp. CBDB1 3622659 YP_307510.1 CDS coaBC NC_007356.1 322268 323449 D phosphopantothenoylcysteine synthetase/decarboxylase 322268..323449 Dehalococcoides sp. CBDB1 3623655 YP_307511.1 CDS valS NC_007356.1 323537 326179 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 323537..326179 Dehalococcoides sp. CBDB1 3623827 YP_307512.1 CDS cbdb_A385 NC_007356.1 326176 327249 R sensor histidine kinase complement(326176..327249) Dehalococcoides sp. CBDB1 3622660 YP_307513.1 CDS cbdb_A386 NC_007356.1 327230 327928 R LuxR family transcriptional regulator complement(327230..327928) Dehalococcoides sp. CBDB1 3622661 YP_307514.1 CDS cbdb_A387 NC_007356.1 328031 328714 R hypothetical protein complement(328031..328714) Dehalococcoides sp. CBDB1 3622662 YP_307515.1 CDS secA NC_007356.1 328739 331597 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(328739..331597) Dehalococcoides sp. CBDB1 3623781 YP_307516.1 CDS prs NC_007356.1 331601 332575 R ribose-phosphate pyrophosphokinase complement(331601..332575) Dehalococcoides sp. CBDB1 3623735 YP_307517.1 CDS glyA NC_007356.1 332591 333838 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(332591..333838) Dehalococcoides sp. CBDB1 3623607 YP_307518.1 CDS cbdb_A391 NC_007356.1 333972 334592 D uracil-DNA glycosylase 333972..334592 Dehalococcoides sp. CBDB1 3622664 YP_307519.1 CDS cbdb_A392 NC_007356.1 334599 336254 D metallo-beta-lactamase 334599..336254 Dehalococcoides sp. CBDB1 3622665 YP_307520.1 CDS ftsK NC_007356.1 336274 338724 D DNA translocase FtsK 336274..338724 Dehalococcoides sp. CBDB1 3622843 YP_307521.1 CDS cbdb_A394 NC_007356.1 338763 338912 R hypothetical protein complement(338763..338912) Dehalococcoides sp. CBDB1 3622666 YP_307522.1 CDS uvrB NC_007356.1 338909 340903 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(338909..340903) Dehalococcoides sp. CBDB1 3623825 YP_307523.1 CDS ruvA NC_007356.1 340949 341533 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(340949..341533) Dehalococcoides sp. CBDB1 3623777 YP_307524.1 CDS ruvC NC_007356.1 341530 342033 R crossover junction endodeoxyribonuclease RuvC complement(341530..342033) Dehalococcoides sp. CBDB1 3623779 YP_307525.1 CDS cbdb_A400 NC_007356.1 342037 342792 R hypothetical protein complement(342037..342792) Dehalococcoides sp. CBDB1 3622668 YP_307526.1 CDS acpS NC_007356.1 342909 343268 R holo-ACP synthase complement(342909..343268) Dehalococcoides sp. CBDB1 3623257 YP_307527.1 CDS cbdb_A403 NC_007356.1 343310 343774 R [Fe] hydrogenase subunit HymA complement(343310..343774) Dehalococcoides sp. CBDB1 3622669 YP_307528.1 CDS cbdb_A404 NC_007356.1 344011 345561 D acyl CoA biotin-dependent carboxyltransferase 344011..345561 Dehalococcoides sp. CBDB1 3622670 YP_307529.1 CDS cbdb_A405 NC_007356.1 345584 346837 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 345584..346837 Dehalococcoides sp. CBDB1 3622671 YP_307530.1 CDS leuD NC_007356.1 346837 347340 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit 346837..347340 Dehalococcoides sp. CBDB1 3622672 YP_307531.1 CDS cbdb_A408 NC_007356.1 347355 348434 D isocitrate dehydrogenase 347355..348434 Dehalococcoides sp. CBDB1 3622673 YP_307532.1 CDS mdh NC_007356.1 348514 349437 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 348514..349437 Dehalococcoides sp. CBDB1 3623745 YP_307533.1 CDS cbdb_A410 NC_007356.1 349460 349831 D hypothetical protein 349460..349831 Dehalococcoides sp. CBDB1 3622675 YP_307534.1 CDS cbdb_A411 NC_007356.1 349832 350674 D Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 349832..350674 Dehalococcoides sp. CBDB1 3622676 YP_307535.1 CDS cbdb_A413 NC_007356.1 350671 351243 D fumarate hydratase subunit beta 350671..351243 Dehalococcoides sp. CBDB1 3622677 YP_307536.1 CDS cbdb_A415 NC_007356.1 351245 351586 D HIT domain-containing protein 351245..351586 Dehalococcoides sp. CBDB1 3622678 YP_307537.1 CDS cbdb_A416 NC_007356.1 351583 352113 R hypothetical protein complement(351583..352113) Dehalococcoides sp. CBDB1 3622679 YP_307538.1 CDS cbdb_A417 NC_007356.1 352130 352606 R catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase complement(352130..352606) Dehalococcoides sp. CBDB1 3622680 YP_307539.1 CDS cbdb_A419 NC_007356.1 352590 353444 R inorganic polyphosphate complement(352590..353444) Dehalococcoides sp. CBDB1 3622681 YP_307540.1 CDS cbdb_A420 NC_007356.1 353516 353839 R hypothetical protein complement(353516..353839) Dehalococcoides sp. CBDB1 3622682 YP_307541.1 CDS cbdb_A423 NC_007356.1 353928 354794 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(353928..354794) Dehalococcoides sp. CBDB1 3622683 YP_307542.1 CDS pheA NC_007356.1 354791 355867 R chorismate mutase complement(354791..355867) Dehalococcoides sp. CBDB1 3623966 YP_307543.1 CDS aroC NC_007356.1 355864 356958 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(355864..356958) Dehalococcoides sp. CBDB1 3622644 YP_307544.1 CDS aroA NC_007356.1 356951 358213 R 3-phosphoshikimate 1-carboxyvinyltransferase complement(356951..358213) Dehalococcoides sp. CBDB1 3623982 YP_307545.1 CDS aroK NC_007356.1 358194 358724 R shikimate kinase complement(358194..358724) Dehalococcoides sp. CBDB1 3622648 YP_307546.1 CDS aroE NC_007356.1 358708 359568 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(358708..359568) Dehalococcoides sp. CBDB1 3622646 YP_307547.1 CDS aroD NC_007356.1 359552 360220 R 3-dehydroquinate dehydratase complement(359552..360220) Dehalococcoides sp. CBDB1 3622645 YP_307548.1 CDS aroB NC_007356.1 360217 361296 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(360217..361296) Dehalococcoides sp. CBDB1 3622643 YP_307549.1 CDS aroF NC_007356.1 361316 362371 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase complement(361316..362371) Dehalococcoides sp. CBDB1 3622647 YP_307550.1 CDS cbdb_A433 NC_007356.1 362626 362745 D hypothetical protein 362626..362745 Dehalococcoides sp. CBDB1 3622685 YP_307551.1 CDS rpsL NC_007356.1 362892 363326 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 362892..363326 Dehalococcoides sp. CBDB1 3623806 YP_307552.1 CDS rpsG NC_007356.1 363340 363810 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 363340..363810 Dehalococcoides sp. CBDB1 3623801 YP_307553.1 CDS fusA NC_007356.1 363866 365947 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 363866..365947 Dehalococcoides sp. CBDB1 3622847 YP_307554.1 CDS rpsJ NC_007356.1 365972 366280 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 365972..366280 Dehalococcoides sp. CBDB1 3623804 YP_307555.1 CDS rplC NC_007356.1 366289 366906 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 366289..366906 Dehalococcoides sp. CBDB1 3623389 YP_307556.1 CDS rplD NC_007356.1 366909 367541 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 366909..367541 Dehalococcoides sp. CBDB1 3623390 YP_307557.1 CDS rplW NC_007356.1 367554 367838 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 367554..367838 Dehalococcoides sp. CBDB1 3623368 YP_307558.1 CDS rplB NC_007356.1 367864 368688 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 367864..368688 Dehalococcoides sp. CBDB1 3623388 YP_307559.1 CDS rpsS NC_007356.1 368695 368976 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 368695..368976 Dehalococcoides sp. CBDB1 3623774 YP_307560.1 CDS rplV NC_007356.1 369007 369336 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 369007..369336 Dehalococcoides sp. CBDB1 3623367 YP_307561.1 CDS rpsC NC_007356.1 369345 370181 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 369345..370181 Dehalococcoides sp. CBDB1 3623797 YP_307562.1 CDS rplP NC_007356.1 370183 370632 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 370183..370632 Dehalococcoides sp. CBDB1 3623361 YP_307563.1 CDS rpmC NC_007356.1 370634 370831 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 370634..370831 Dehalococcoides sp. CBDB1 3623372 YP_307564.1 CDS rpsQ NC_007356.1 370839 371111 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 370839..371111 Dehalococcoides sp. CBDB1 3623772 YP_307565.1 CDS rplN NC_007356.1 371127 371495 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 371127..371495 Dehalococcoides sp. CBDB1 3623359 YP_307566.1 CDS rplX NC_007356.1 371506 371817 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 371506..371817 Dehalococcoides sp. CBDB1 3623369 YP_307567.1 CDS rplE NC_007356.1 371817 372356 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 371817..372356 Dehalococcoides sp. CBDB1 3623391 YP_307568.1 CDS rpsN NC_007356.1 372365 372550 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 372365..372550 Dehalococcoides sp. CBDB1 3623808 YP_307569.1 CDS rpsH NC_007356.1 372584 372979 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 372584..372979 Dehalococcoides sp. CBDB1 3623802 YP_307570.1 CDS rplF NC_007356.1 372995 373543 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 372995..373543 Dehalococcoides sp. CBDB1 3623392 YP_307571.1 CDS rplR NC_007356.1 373543 373908 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 373543..373908 Dehalococcoides sp. CBDB1 3623363 YP_307572.1 CDS rpsE NC_007356.1 373925 374443 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 373925..374443 Dehalococcoides sp. CBDB1 3623799 YP_307573.1 CDS rpmD NC_007356.1 374436 374618 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 374436..374618 Dehalococcoides sp. CBDB1 3623373 YP_307574.1 CDS rplO NC_007356.1 374618 375079 D late assembly protein; 50S ribosomal protein L15 374618..375079 Dehalococcoides sp. CBDB1 3623360 YP_307575.1 CDS secY NC_007356.1 375060 376376 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 375060..376376 Dehalococcoides sp. CBDB1 3623786 YP_307576.1 CDS adk NC_007356.1 376386 377036 D adenylate kinase 376386..377036 Dehalococcoides sp. CBDB1 3623263 YP_307577.1 CDS map NC_007356.1 377044 377799 D methionine aminopeptidase 377044..377799 Dehalococcoides sp. CBDB1 3623744 YP_307578.1 CDS infA NC_007356.1 377809 378030 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 377809..378030 Dehalococcoides sp. CBDB1 3623985 YP_307579.1 CDS rpmJ NC_007356.1 378059 378172 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 378059..378172 Dehalococcoides sp. CBDB1 3623791 YP_307580.1 CDS rpsM NC_007356.1 378182 378571 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 378182..378571 Dehalococcoides sp. CBDB1 3623807 YP_307581.1 CDS rpsK NC_007356.1 378597 378989 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 378597..378989 Dehalococcoides sp. CBDB1 3623805 YP_307582.1 CDS rpsD NC_007356.1 378999 379622 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 378999..379622 Dehalococcoides sp. CBDB1 3623798 YP_307583.1 CDS rpoA NC_007356.1 379643 380635 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 379643..380635 Dehalococcoides sp. CBDB1 3623792 YP_307584.1 CDS rplQ NC_007356.1 380666 381019 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 380666..381019 Dehalococcoides sp. CBDB1 3623362 YP_307585.1 CDS truA NC_007356.1 381056 381796 D tRNA pseudouridine synthase A 381056..381796 Dehalococcoides sp. CBDB1 3623815 YP_307586.1 CDS rplM NC_007356.1 381798 382229 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 381798..382229 Dehalococcoides sp. CBDB1 3623358 YP_307587.1 CDS rpsI NC_007356.1 382242 382640 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 382242..382640 Dehalococcoides sp. CBDB1 3623803 YP_307588.1 CDS cbdb_A471 NC_007356.1 382716 382910 R hypothetical protein complement(382716..382910) Dehalococcoides sp. CBDB1 3622687 YP_307589.1 CDS cbdb_A472 NC_007356.1 383307 384374 R catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate; bifunctional phosphoglucose/phosphomannose isomerase complement(383307..384374) Dehalococcoides sp. CBDB1 3622688 YP_307590.1 CDS cbdb_A474 NC_007356.1 384399 385814 R phosphoglucomutase complement(384399..385814) Dehalococcoides sp. CBDB1 3622689 YP_307591.1 CDS cbdb_A475 NC_007356.1 385810 386013 R hypothetical protein complement(385810..386013) Dehalococcoides sp. CBDB1 3622690 YP_307592.1 CDS metK NC_007356.1 386044 387264 R methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(386044..387264) Dehalococcoides sp. CBDB1 3623748 YP_307593.1 CDS ahcY NC_007356.1 387274 388530 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(387274..388530) Dehalococcoides sp. CBDB1 3623264 YP_307594.1 CDS cbdb_A478 NC_007356.1 388538 390100 R hypothetical protein complement(388538..390100) Dehalococcoides sp. CBDB1 3622691 YP_307595.1 CDS cbdb_A479 NC_007356.1 390100 390300 R hypothetical protein complement(390100..390300) Dehalococcoides sp. CBDB1 3622692 YP_307596.1 CDS cbdb_A481 NC_007356.1 390297 391328 R hypothetical protein complement(390297..391328) Dehalococcoides sp. CBDB1 3622694 YP_307597.1 CDS mtaP NC_007356.1 391321 392205 R methylthioadenosine phosphorylase complement(391321..392205) Dehalococcoides sp. CBDB1 3623760 YP_307598.1 CDS cbdb_A484 NC_007356.1 392280 393278 R aIF-2BI family translation initiation factor complement(392280..393278) Dehalococcoides sp. CBDB1 3622695 YP_307599.1 CDS cbdb_A485 NC_007356.1 393280 394377 R ABC transporter permease complement(393280..394377) Dehalococcoides sp. CBDB1 3622696 YP_307600.1 CDS cbdb_A486 NC_007356.1 394374 395324 R daunorubicin resistance ABC transporter ATP-binding protein complement(394374..395324) Dehalococcoides sp. CBDB1 3622697 YP_307601.1 CDS cbdb_A488 NC_007356.1 395418 395840 D hypothetical protein 395418..395840 Dehalococcoides sp. CBDB1 3622698 YP_307602.1 CDS cbdb_A489 NC_007356.1 395837 396250 D hypothetical protein 395837..396250 Dehalococcoides sp. CBDB1 3622699 YP_307603.1 CDS cbdb_A490 NC_007356.1 396237 396797 R acetyltransferase complement(396237..396797) Dehalococcoides sp. CBDB1 3622700 YP_307604.1 CDS cbdb_A492 NC_007356.1 396801 397751 R PBS lyase complement(396801..397751) Dehalococcoides sp. CBDB1 3622701 YP_307605.1 CDS cbdb_A493 NC_007356.1 397751 398581 R hypothetical protein complement(397751..398581) Dehalococcoides sp. CBDB1 3622702 YP_307606.1 CDS cbdb_A494 NC_007356.1 398595 399896 R hypothetical protein complement(398595..399896) Dehalococcoides sp. CBDB1 3622703 YP_307607.1 CDS cbdb_A496 NC_007356.1 399898 401274 R hypothetical protein complement(399898..401274) Dehalococcoides sp. CBDB1 3622704 YP_307608.1 CDS pmmB NC_007356.1 401412 402704 D phosphomannomutase 401412..402704 Dehalococcoides sp. CBDB1 3623975 YP_307609.1 CDS rfbA NC_007356.1 402706 403908 D glucose-1-phosphate thymidylyltransferase 402706..403908 Dehalococcoides sp. CBDB1 3623411 YP_307610.1 CDS cbdb_A500 NC_007356.1 403926 405107 D glucose-1-phosphate thymidylyltransferase 403926..405107 Dehalococcoides sp. CBDB1 3622706 YP_307611.1 CDS glmS NC_007356.1 405108 406889 D glucosamine--fructose-6-phosphate aminotransferase 405108..406889 Dehalococcoides sp. CBDB1 3623600 YP_307612.1 CDS cbdb_A504 NC_007356.1 406897 407349 R phosphatidylethanolamine-binding protein complement(406897..407349) Dehalococcoides sp. CBDB1 3622707 YP_307613.1 CDS cbdb_A505 NC_007356.1 407361 408065 R HAD family hydrolase complement(407361..408065) Dehalococcoides sp. CBDB1 3622708 YP_307614.1 CDS lysA NC_007356.1 408204 409508 D diaminopimelate decarboxylase 408204..409508 Dehalococcoides sp. CBDB1 3624009 YP_307615.1 CDS holB NC_007356.1 409522 410553 D DNA polymerase III subunit delta' 409522..410553 Dehalococcoides sp. CBDB1 3623903 YP_307616.1 CDS cbdb_A510 NC_007356.1 410546 411379 D hypothetical protein 410546..411379 Dehalococcoides sp. CBDB1 3622709 YP_307617.1 CDS cbdb_A511 NC_007356.1 411368 411898 R HNH endonuclease domain-containing protein complement(411368..411898) Dehalococcoides sp. CBDB1 3622710 YP_307618.1 CDS cbdb_A512 NC_007356.1 411970 413277 R ATP-binding protein complement(411970..413277) Dehalococcoides sp. CBDB1 3622711 YP_307619.1 CDS cbdb_A513 NC_007356.1 413303 414013 R hypothetical protein complement(413303..414013) Dehalococcoides sp. CBDB1 3622712 YP_307620.1 CDS dnaB NC_007356.1 414010 415386 R replicative DNA helicase complement(414010..415386) Dehalococcoides sp. CBDB1 3623178 YP_307621.1 CDS rplI NC_007356.1 415387 415842 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(415387..415842) Dehalococcoides sp. CBDB1 3623393 YP_307622.1 CDS trxB NC_007356.1 415912 416832 R thioredoxin reductase complement(415912..416832) Dehalococcoides sp. CBDB1 3623818 YP_307623.1 CDS plsX NC_007356.1 416813 417856 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(416813..417856) Dehalococcoides sp. CBDB1 3623974 YP_307624.1 CDS cbdb_A519 NC_007356.1 417896 418747 R activator of 2-hydroxyglutaryl-CoA dehydratase complement(417896..418747) Dehalococcoides sp. CBDB1 3622713 YP_307625.1 CDS cbdb_A520 NC_007356.1 418773 419966 R amidohydrolase complement(418773..419966) Dehalococcoides sp. CBDB1 3622715 YP_307626.1 CDS uvrA NC_007356.1 420180 423014 D excinuclease ABC subunit A 420180..423014 Dehalococcoides sp. CBDB1 3623824 YP_307627.1 CDS cbdb_A522 NC_007356.1 423088 423639 D HDIG domain-containing protein 423088..423639 Dehalococcoides sp. CBDB1 3622716 YP_307628.1 CDS cbdb_A523 NC_007356.1 423748 423951 D DNA-binding protein 423748..423951 Dehalococcoides sp. CBDB1 3622717 YP_307629.1 CDS cbdb_A524 NC_007356.1 423948 426527 R exonuclease SbcC complement(423948..426527) Dehalococcoides sp. CBDB1 3622718 YP_307630.1 CDS rpoD NC_007356.1 426698 428260 R RNA polymerase, sigma factor complement(426698..428260) Dehalococcoides sp. CBDB1 3623795 YP_307631.1 CDS dnaG NC_007356.1 428261 430027 R DNA primase complement(428261..430027) Dehalococcoides sp. CBDB1 3623180 YP_307632.1 CDS cbdb_A528 NC_007356.1 430029 431066 R dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(430029..431066) Dehalococcoides sp. CBDB1 3622719 YP_307633.1 CDS ppsA NC_007356.1 431063 433339 R phosphoenolpyruvate synthase complement(431063..433339) Dehalococcoides sp. CBDB1 3623726 YP_307634.1 CDS cbdb_A530 NC_007356.1 433637 434206 D hypothetical protein 433637..434206 Dehalococcoides sp. CBDB1 3622720 YP_307635.1 CDS cbdb_A531 NC_007356.1 434264 434497 D hypothetical protein 434264..434497 Dehalococcoides sp. CBDB1 3622721 YP_307636.1 CDS atpB NC_007356.1 434500 435444 D ATP synthase F0 subunit A 434500..435444 Dehalococcoides sp. CBDB1 3622655 YP_307637.1 CDS atpE NC_007356.1 435485 435715 D ATP synthase F0 subunit C 435485..435715 Dehalococcoides sp. CBDB1 3623595 YP_307638.1 CDS atpF NC_007356.1 435740 436249 D ATP synthase F0 subunit B 435740..436249 Dehalococcoides sp. CBDB1 3623596 YP_307639.1 CDS atpH NC_007356.1 436270 436812 D produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 436270..436812 Dehalococcoides sp. CBDB1 3622767 YP_307640.1 CDS atpA NC_007356.1 436835 438346 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 436835..438346 Dehalococcoides sp. CBDB1 3622654 YP_307641.1 CDS atpG NC_007356.1 438371 439228 D ATP synthase F1 subunit gamma 438371..439228 Dehalococcoides sp. CBDB1 3622766 YP_307642.1 CDS atpD NC_007356.1 439244 440638 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 439244..440638 Dehalococcoides sp. CBDB1 3623594 YP_307643.1 CDS atpC NC_007356.1 440663 441085 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 440663..441085 Dehalococcoides sp. CBDB1 3623549 YP_307644.1 CDS rimM NC_007356.1 441160 441660 R 16S rRNA-processing protein RimM complement(441160..441660) Dehalococcoides sp. CBDB1 3623381 YP_307645.1 CDS cbdb_A541 NC_007356.1 441748 441975 R hypothetical protein complement(441748..441975) Dehalococcoides sp. CBDB1 3622723 YP_307646.1 CDS rpsP NC_007356.1 441991 442239 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(441991..442239) Dehalococcoides sp. CBDB1 3623771 YP_307647.1 CDS nfi NC_007356.1 442384 443055 D endonuclease V 442384..443055 Dehalococcoides sp. CBDB1 3623680 YP_307648.1 CDS prfB NC_007356.1 443182 444252 D peptide chain release factor 2 443182..444252 Dehalococcoides sp. CBDB1 3623729 YP_307649.1 CDS cbdb_A545 NC_007356.1 444252 445478 D hypothetical protein 444252..445478 Dehalococcoides sp. CBDB1 3622724 YP_307650.1 CDS cbdb_A546 NC_007356.1 445489 446148 D RadC family DNA repair protein 445489..446148 Dehalococcoides sp. CBDB1 3622725 YP_307651.1 CDS cbdb_A547 NC_007356.1 446151 447743 D dipeptide/oligopeptide/nickel ABC transporter periplasmic protein 446151..447743 Dehalococcoides sp. CBDB1 3622726 YP_307652.1 CDS cbdb_A549 NC_007356.1 448219 448503 R hypothetical protein complement(448219..448503) Dehalococcoides sp. CBDB1 3622727 YP_307653.1 CDS cbdb_A553 NC_007356.1 448760 449902 R classes I and II aminotransferase complement(448760..449902) Dehalococcoides sp. CBDB1 3622729 YP_307654.1 CDS serS NC_007356.1 449918 451159 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(449918..451159) Dehalococcoides sp. CBDB1 3623788 YP_307655.1 CDS lysS NC_007356.1 451191 452687 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(451191..452687) Dehalococcoides sp. CBDB1 3623742 YP_307656.1 CDS cbdb_A556 NC_007356.1 452917 453096 D hypothetical protein 452917..453096 Dehalococcoides sp. CBDB1 3622730 YP_307657.1 CDS recO NC_007356.1 453110 453871 R recombination protein RecO complement(453110..453871) Dehalococcoides sp. CBDB1 3623407 YP_307658.1 CDS cbdb_A558 NC_007356.1 453872 453967 R hypothetical protein complement(453872..453967) Dehalococcoides sp. CBDB1 3622731 YP_307659.1 CDS cbdb_A559 NC_007356.1 453970 454692 R hypothetical protein complement(453970..454692) Dehalococcoides sp. CBDB1 3622732 YP_307660.1 CDS corA NC_007356.1 454694 455758 R magnesium and cobalt transport protein CorA complement(454694..455758) Dehalococcoides sp. CBDB1 3623163 YP_307661.1 CDS recR NC_007356.1 455797 456411 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(455797..456411) Dehalococcoides sp. CBDB1 3623408 YP_307662.1 CDS cbdb_A562 NC_007356.1 456433 456732 R hypothetical protein complement(456433..456732) Dehalococcoides sp. CBDB1 3622734 YP_307663.1 CDS dnaX NC_007356.1 456742 458454 R DNA polymerase III subunits gamma and tau complement(456742..458454) Dehalococcoides sp. CBDB1 3623184 YP_307664.1 CDS cbdb_A564 NC_007356.1 458555 458815 R hypothetical protein complement(458555..458815) Dehalococcoides sp. CBDB1 3622735 YP_307665.1 CDS cbdb_A565 NC_007356.1 458846 459268 R hypothetical protein complement(458846..459268) Dehalococcoides sp. CBDB1 3622736 YP_307666.1 CDS cbdb_A566 NC_007356.1 459284 459568 R hypothetical protein complement(459284..459568) Dehalococcoides sp. CBDB1 3622737 YP_307667.1 CDS cbdb_A567 NC_007356.1 459568 459942 R hypothetical protein complement(459568..459942) Dehalococcoides sp. CBDB1 3622738 YP_307668.1 CDS cbdb_A568 NC_007356.1 460149 461327 R GTPase domain-containing protein complement(460149..461327) Dehalococcoides sp. CBDB1 3622739 YP_307669.1 CDS gap NC_007356.1 461415 462422 R glyceraldehyde-3-phosphate dehydrogenase complement(461415..462422) Dehalococcoides sp. CBDB1 3622848 YP_307670.1 CDS cbdb_A570 NC_007356.1 462444 463463 R hypothetical protein complement(462444..463463) Dehalococcoides sp. CBDB1 3622740 YP_307671.1 CDS cbdb_A571 NC_007356.1 463460 464278 R hypothetical protein complement(463460..464278) Dehalococcoides sp. CBDB1 3622741 YP_307672.1 CDS eno NC_007356.1 464294 465580 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(464294..465580) Dehalococcoides sp. CBDB1 3623282 YP_307673.1 CDS cbdb_A574 NC_007356.1 465599 466078 R hypothetical protein complement(465599..466078) Dehalococcoides sp. CBDB1 3622742 YP_307674.1 CDS pth NC_007356.1 466126 466695 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(466126..466695) Dehalococcoides sp. CBDB1 3623738 YP_307675.1 CDS ligA NC_007356.1 466695 468728 R NAD-dependent DNA ligase complement(466695..468728) Dehalococcoides sp. CBDB1 3624007 YP_307676.1 CDS cbdb_A578 NC_007356.1 468873 470201 D hypothetical protein 468873..470201 Dehalococcoides sp. CBDB1 3622743 YP_307677.1 CDS cbdb_A579 NC_007356.1 470272 470859 R with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT complement(470272..470859) Dehalococcoides sp. CBDB1 3622744 YP_307678.1 CDS serA NC_007356.1 470934 472514 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(470934..472514) Dehalococcoides sp. CBDB1 3623787 YP_307679.1 CDS cbdb_A581 NC_007356.1 472516 473604 R soluble hydrogenase, tritium exchange subunit complement(472516..473604) Dehalococcoides sp. CBDB1 3622746 YP_307680.1 CDS tyrS NC_007356.1 473664 474854 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(473664..474854) Dehalococcoides sp. CBDB1 3623822 YP_307681.1 CDS ribF NC_007356.1 474861 475778 R riboflavin biosynthesis protein RibF complement(474861..475778) Dehalococcoides sp. CBDB1 3623377 YP_307682.1 CDS rpoB NC_007356.1 476185 480006 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 476185..480006 Dehalococcoides sp. CBDB1 3623793 YP_307683.1 CDS rpoC NC_007356.1 479993 483880 D DNA-directed RNA polymerase subunit beta' 479993..483880 Dehalococcoides sp. CBDB1 3623794 YP_307684.1 CDS ruvB NC_007356.1 484087 485136 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 484087..485136 Dehalococcoides sp. CBDB1 3623778 YP_307685.1 CDS cbdb_A589 NC_007356.1 485126 485674 D hypothetical protein 485126..485674 Dehalococcoides sp. CBDB1 3622747 YP_307686.1 CDS rimI NC_007356.1 485751 486392 D ribosomal-protein-alanine acetyltransferase 485751..486392 Dehalococcoides sp. CBDB1 3623379 YP_307687.1 CDS cbdb_A592 NC_007356.1 486409 486636 R hypothetical protein complement(486409..486636) Dehalococcoides sp. CBDB1 3622749 YP_307688.1 CDS cbdb_A593 NC_007356.1 486701 487240 R hypothetical protein complement(486701..487240) Dehalococcoides sp. CBDB1 3622656 YP_307689.1 CDS cbdb_A594 NC_007356.1 487269 487943 R hypothetical protein complement(487269..487943) Dehalococcoides sp. CBDB1 3622657 YP_307690.1 CDS cbdb_A595 NC_007356.1 487987 489366 D ELP3 family histone acetyltransferase 487987..489366 Dehalococcoides sp. CBDB1 3622658 YP_307691.1 CDS cbdb_A596 NC_007356.1 489582 490520 D hydrogenase 3 subunit VhuG 489582..490520 Dehalococcoides sp. CBDB1 3622762 YP_307692.1 CDS cbdb_A597 NC_007356.1 490552 491991 D hydrogenase 3 subunit VhuA 490552..491991 Dehalococcoides sp. CBDB1 3622776 YP_307693.1 CDS cbdb_A598 NC_007356.1 491994 492497 D hydrogenase maturation protease 491994..492497 Dehalococcoides sp. CBDB1 3622777 YP_307694.1 CDS cbdb_A599 NC_007356.1 492494 492799 R hypothetical protein complement(492494..492799) Dehalococcoides sp. CBDB1 3622778 YP_307695.1 CDS cbdb_A600 NC_007356.1 492817 493356 R thiol-disulfide oxidoreductase complement(492817..493356) Dehalococcoides sp. CBDB1 3622779 YP_307696.1 CDS ccdA NC_007356.1 493358 494080 R cytochrome c-type biogenesis protein CcdA complement(493358..494080) Dehalococcoides sp. CBDB1 3622774 YP_307697.1 CDS cbdb_A602 NC_007356.1 494143 495282 D hypothetical protein 494143..495282 Dehalococcoides sp. CBDB1 3622780 YP_307698.1 CDS cbdb_A604 NC_007356.1 495303 495791 D hypothetical protein 495303..495791 Dehalococcoides sp. CBDB1 3622781 YP_307699.1 CDS rdhI NC_007356.1 495989 496738 D radical SAM domain-containing protein 495989..496738 Dehalococcoides sp. CBDB1 3623426 YP_307700.1 CDS nrd NC_007356.1 496739 498538 D ribonucleotide reductase 496739..498538 Dehalococcoides sp. CBDB1 3623684 YP_307701.1 CDS cbdb_A610 NC_007356.1 498581 499540 R response regulator complement(498581..499540) Dehalococcoides sp. CBDB1 3622782 YP_307702.1 CDS cbdb_A612 NC_007356.1 499570 502128 R sensor histidine kinase complement(499570..502128) Dehalococcoides sp. CBDB1 3622783 YP_307703.1 CDS cbdb_A613 NC_007356.1 502304 502636 R hypothetical protein complement(502304..502636) Dehalococcoides sp. CBDB1 3622784 YP_307704.1 CDS cbdb_A614 NC_007356.1 502718 503983 D hypothetical protein 502718..503983 Dehalococcoides sp. CBDB1 3622785 YP_307705.1 CDS kamA NC_007356.1 504126 505445 D lysine 2,3-aminomutase 504126..505445 Dehalococcoides sp. CBDB1 3623996 YP_307706.1 CDS ddl NC_007356.1 505417 506433 D D-alanine--D-alanine ligase 505417..506433 Dehalococcoides sp. CBDB1 3623173 YP_307707.1 CDS cbdb_A617 NC_007356.1 506564 506995 D FUR family transcriptional regulator 506564..506995 Dehalococcoides sp. CBDB1 3622786 YP_307708.1 CDS cbdb_A618 NC_007356.1 506992 507864 D cation ABC transporter periplasmc-binding protein 506992..507864 Dehalococcoides sp. CBDB1 3622787 YP_307709.1 CDS cbdb_A619 NC_007356.1 507867 508631 D cation ABC transporter ATP-binding protein 507867..508631 Dehalococcoides sp. CBDB1 3622788 YP_307710.1 CDS cbdb_A620 NC_007356.1 508628 509473 D cation ABC transporter permease 508628..509473 Dehalococcoides sp. CBDB1 3622790 YP_307711.1 CDS cbdb_A621 NC_007356.1 509497 509847 R hypothetical protein complement(509497..509847) Dehalococcoides sp. CBDB1 3622791 YP_307712.1 CDS ftsZ NC_007356.1 509963 511093 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(509963..511093) Dehalococcoides sp. CBDB1 3622845 YP_307713.1 CDS ftsA NC_007356.1 511126 512328 R cell division protein FtsA complement(511126..512328) Dehalococcoides sp. CBDB1 3622841 YP_307714.1 CDS cbdb_A624 NC_007356.1 512836 513525 D hypothetical protein 512836..513525 Dehalococcoides sp. CBDB1 3622792 YP_307715.1 CDS cbdb_A625 NC_007356.1 513682 514545 D universal stress protein 513682..514545 Dehalococcoides sp. CBDB1 3622793 YP_307716.1 CDS cbdb_A626 NC_007356.1 514599 515228 D cyclase 514599..515228 Dehalococcoides sp. CBDB1 3622794 YP_307717.1 CDS cbdb_A627 NC_007356.1 515229 515891 D ribulose-phosphate 3-epimerase 515229..515891 Dehalococcoides sp. CBDB1 3622795 YP_307718.1 CDS rpiB NC_007356.1 515888 516346 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(515888..516346) Dehalococcoides sp. CBDB1 3623386 YP_307719.1 CDS tkt NC_007356.1 516339 518339 R transketolase complement(516339..518339) Dehalococcoides sp. CBDB1 3624025 YP_307720.1 CDS cbdb_A630 NC_007356.1 518391 518900 R nitroreductase complement(518391..518900) Dehalococcoides sp. CBDB1 3622797 YP_307721.1 CDS cbdb_A631 NC_007356.1 519026 519868 D hypothetical protein 519026..519868 Dehalococcoides sp. CBDB1 3622798 YP_307722.1 CDS cbdb_A632 NC_007356.1 520049 520639 D hypothetical protein 520049..520639 Dehalococcoides sp. CBDB1 3622799 YP_307723.1 CDS fecB NC_007356.1 521245 522258 D cobalamin/Fe3+-siderophores ABC transporter periplasmic protein 521245..522258 Dehalococcoides sp. CBDB1 3623290 YP_307724.1 CDS fecD NC_007356.1 522314 523405 D cobalamin/Fe3+-siderophores ABC transporter permease 522314..523405 Dehalococcoides sp. CBDB1 3623291 YP_307725.1 CDS fepC NC_007356.1 523417 524244 D cobalamin/Fe3+-siderophores ABC transporter ATPase 523417..524244 Dehalococcoides sp. CBDB1 3623294 YP_307726.1 CDS rdhF NC_007356.1 524234 525004 D hypothetical protein 524234..525004 Dehalococcoides sp. CBDB1 3623121 YP_307727.1 CDS cbiB NC_007356.1 525007 525933 D cobalamin biosynthesis protein 525007..525933 Dehalococcoides sp. CBDB1 3622773 YP_307728.1 CDS cobD NC_007356.1 525917 527023 D threonine-phosphate decarboxylase 525917..527023 Dehalococcoides sp. CBDB1 3623154 YP_307729.1 CDS cobT NC_007356.1 527396 528454 D nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 527396..528454 Dehalococcoides sp. CBDB1 3623157 YP_307730.1 CDS cobS NC_007356.1 528494 529258 D cobalamin 5'-phosphate synthase 528494..529258 Dehalococcoides sp. CBDB1 3623156 YP_307731.1 CDS cobC NC_007356.1 529277 529879 D alpha-ribazole-5'-phosphate phosphatase 529277..529879 Dehalococcoides sp. CBDB1 3623151 YP_307732.1 CDS cobU NC_007356.1 529933 530499 D cobinamide kinase 529933..530499 Dehalococcoides sp. CBDB1 3623158 YP_307733.1 CDS trx NC_007356.1 530575 530898 R thioredoxin complement(530575..530898) Dehalococcoides sp. CBDB1 3623817 YP_307734.1 CDS cbdb_A646 NC_007356.1 531068 532213 R sensor histidine kinase complement(531068..532213) Dehalococcoides sp. CBDB1 3622800 YP_307735.1 CDS cbdb_A647 NC_007356.1 532230 532904 R LuxR family transcriptional regulator complement(532230..532904) Dehalococcoides sp. CBDB1 3622801 YP_307736.1 CDS cbdb_A649 NC_007356.1 532974 533618 R hypothetical protein complement(532974..533618) Dehalococcoides sp. CBDB1 3622802 YP_307737.1 CDS acsC NC_007356.1 533650 534996 R part of a complex that catalyzes the cleavage of acetyl-CoA; acetyl-CoA decarbonylase/synthase complex subunit gamma complement(533650..534996) Dehalococcoides sp. CBDB1 3623259 YP_307738.1 CDS codH NC_007356.1 535017 537218 R in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex; bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta complement(535017..537218) Dehalococcoides sp. CBDB1 3623159 YP_307739.1 CDS acsD NC_007356.1 537278 538219 R part of a complex that catalyzes the cleavage of acetyl-CoA; acetyl-CoA decarbonylase/synthase complex subunit delta complement(537278..538219) Dehalococcoides sp. CBDB1 3623260 YP_307740.1 CDS folD NC_007356.1 538255 539145 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(538255..539145) Dehalococcoides sp. CBDB1 3622835 YP_307741.1 CDS acsF NC_007356.1 539145 539927 R carbon monoxide dehydrogenase nickel-insertion accessory protein complement(539145..539927) Dehalococcoides sp. CBDB1 3623261 YP_307742.1 CDS cbdb_A659 NC_007356.1 539924 541846 R iron-sulfur cluster binding protein complement(539924..541846) Dehalococcoides sp. CBDB1 3622803 YP_307743.1 CDS fhs NC_007356.1 541884 543677 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(541884..543677) Dehalococcoides sp. CBDB1 3623295 YP_307744.1 CDS cbdb_A661 NC_007356.1 543808 544389 D hypothetical protein 543808..544389 Dehalococcoides sp. CBDB1 3622804 YP_307745.1 CDS cbdb_A662 NC_007356.1 544508 544687 D hypothetical protein 544508..544687 Dehalococcoides sp. CBDB1 3622805 YP_307746.1 CDS aspS NC_007356.1 544764 546560 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 544764..546560 Dehalococcoides sp. CBDB1 3622653 YP_307747.1 CDS tig NC_007356.1 546580 547923 D trigger factor 546580..547923 Dehalococcoides sp. CBDB1 3624024 YP_307748.1 CDS clpP NC_007356.1 547920 548522 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 547920..548522 Dehalococcoides sp. CBDB1 3623654 YP_307749.1 CDS cbdb_A667 NC_007356.1 548603 549589 R carbohydrate kinase complement(548603..549589) Dehalococcoides sp. CBDB1 3622806 YP_307750.1 CDS cbdb_A668 NC_007356.1 549591 550412 R phosphoribosylglycinamide transformylase complement(549591..550412) Dehalococcoides sp. CBDB1 3622807 YP_307751.1 CDS cbdb_A669 NC_007356.1 550415 551074 R phosphotransferase domain-containing protein complement(550415..551074) Dehalococcoides sp. CBDB1 3622808 YP_307752.1 CDS efp NC_007356.1 551077 551637 R translation elongation factor P complement(551077..551637) Dehalococcoides sp. CBDB1 3623279 YP_307753.1 CDS cbdb_A671 NC_007356.1 551653 552744 R M24 family metallopeptidase complement(551653..552744) Dehalococcoides sp. CBDB1 3622810 YP_307754.1 CDS xerC NC_007356.1 552741 553664 R tyrosine recombinase XerC complement(552741..553664) Dehalococcoides sp. CBDB1 3623828 YP_307755.1 CDS topA NC_007356.1 553665 555776 R DNA topoisomerase I complement(553665..555776) Dehalococcoides sp. CBDB1 3624027 YP_307756.1 CDS cbdb_A675 NC_007356.1 555783 556934 R DNA processing protein DprA complement(555783..556934) Dehalococcoides sp. CBDB1 3622811 YP_307757.1 CDS cbdb_A676 NC_007356.1 557369 557545 D hypothetical protein 557369..557545 Dehalococcoides sp. CBDB1 3622812 YP_307758.1 CDS gerN NC_007356.1 557675 558958 D antiporter GerN 557675..558958 Dehalococcoides sp. CBDB1 3623598 YP_307759.1 CDS porG NC_007356.1 559100 559672 D pyruvic-ferredoxin oxidoreductase subunit gamma 559100..559672 Dehalococcoides sp. CBDB1 3623723 YP_307760.1 CDS porD NC_007356.1 559701 559961 D pyruvic-ferredoxin oxidoreductase subunit delta 559701..559961 Dehalococcoides sp. CBDB1 3623722 YP_307761.1 CDS porA NC_007356.1 559961 561133 D pyruvic-ferredoxin oxidoreductase subunit alpha 559961..561133 Dehalococcoides sp. CBDB1 3623720 YP_307762.1 CDS porB NC_007356.1 561133 562074 D pyruvic-ferredoxin oxidoreductase subunit beta 561133..562074 Dehalococcoides sp. CBDB1 3623721 YP_307763.1 CDS hymA NC_007356.1 562050 562523 D [Fe] hydrogenase subunit HymA 562050..562523 Dehalococcoides sp. CBDB1 3622760 YP_307764.1 CDS hymB NC_007356.1 562523 564394 D [Fe] hydrogenase subunit HymB 562523..564394 Dehalococcoides sp. CBDB1 3623072 YP_307765.1 CDS hymC NC_007356.1 564407 565129 D [Fe] hydrogenase subunit HymC 564407..565129 Dehalococcoides sp. CBDB1 3623074 YP_307766.1 CDS cbdb_B17 NC_007356.1 565317 566042 D hypothetical protein 565317..566042 Dehalococcoides sp. CBDB1 3622958 YP_307767.1 CDS cbdb_A687 NC_007356.1 566204 567673 D mercuric reductase 566204..567673 Dehalococcoides sp. CBDB1 3622813 YP_307768.1 CDS cbdb_A688 NC_007356.1 567933 568319 D hypothetical protein 567933..568319 Dehalococcoides sp. CBDB1 3622814 YP_307769.1 CDS cbdb_A689 NC_007356.1 568499 569293 R oxidoreductase, short chaindehydrogenase complement(568499..569293) Dehalococcoides sp. CBDB1 3622815 YP_307770.1 CDS cbdb_A691 NC_007356.1 569504 570652 D GTP-binding protein 569504..570652 Dehalococcoides sp. CBDB1 3622817 YP_307771.1 CDS cbdb_A692 NC_007356.1 570656 570868 D hypothetical protein 570656..570868 Dehalococcoides sp. CBDB1 3622818 YP_307772.1 CDS cbdb_A693 NC_007356.1 571250 571411 R hypothetical protein complement(571250..571411) Dehalococcoides sp. CBDB1 3622819 YP_307773.1 CDS cbdb_A694 NC_007356.1 571443 571868 R hypothetical protein complement(571443..571868) Dehalococcoides sp. CBDB1 3622820 YP_307774.1 CDS cbdb_A695 NC_007356.1 571869 572207 R hypothetical protein complement(571869..572207) Dehalococcoides sp. CBDB1 3622821 YP_307775.1 CDS cbdb_A696 NC_007356.1 572204 572413 R hypothetical protein complement(572204..572413) Dehalococcoides sp. CBDB1 3622822 YP_307776.1 CDS cbdb_A697 NC_007356.1 572493 573185 R hypothetical protein complement(572493..573185) Dehalococcoides sp. CBDB1 3622823 YP_307777.1 CDS cbdb_A698 NC_007356.1 573178 573381 R hypothetical protein complement(573178..573381) Dehalococcoides sp. CBDB1 3622824 YP_307778.1 CDS cbdb_A699 NC_007356.1 573381 574511 R hypothetical protein complement(573381..574511) Dehalococcoides sp. CBDB1 3622825 YP_307779.1 CDS cbdb_A700 NC_007356.1 574514 574921 R hypothetical protein complement(574514..574921) Dehalococcoides sp. CBDB1 3622826 YP_307780.1 CDS cbdb_A701 NC_007356.1 574980 575546 R hypothetical protein complement(574980..575546) Dehalococcoides sp. CBDB1 3622827 YP_307781.1 CDS cbdb_A703 NC_007356.1 575548 575826 R hypothetical protein complement(575548..575826) Dehalococcoides sp. CBDB1 3622828 YP_307782.1 CDS cbdb_A704 NC_007356.1 575987 576526 R hypothetical protein complement(575987..576526) Dehalococcoides sp. CBDB1 3622829 YP_307783.1 CDS cbdb_A705 NC_007356.1 576552 576995 R hypothetical protein complement(576552..576995) Dehalococcoides sp. CBDB1 3622830 YP_307784.1 CDS cbdb_A706 NC_007356.1 576992 577267 R hypothetical protein complement(576992..577267) Dehalococcoides sp. CBDB1 3622831 YP_307785.1 CDS cbdb_A707 NC_007356.1 577272 577403 R hypothetical protein complement(577272..577403) Dehalococcoides sp. CBDB1 3622832 YP_307786.1 CDS cbdb_A708 NC_007356.1 577555 577671 D hypothetical protein 577555..577671 Dehalococcoides sp. CBDB1 3623535 YP_307787.1 CDS cbdb_A709 NC_007356.1 577697 578212 R hypothetical protein complement(577697..578212) Dehalococcoides sp. CBDB1 3623536 YP_307788.1 CDS cbdb_A711 NC_007356.1 578315 578521 R hypothetical protein complement(578315..578521) Dehalococcoides sp. CBDB1 3623537 YP_307789.1 CDS cbdb_A712 NC_007356.1 578499 579170 R hypothetical protein complement(578499..579170) Dehalococcoides sp. CBDB1 3623538 YP_307790.1 CDS cbdb_A713 NC_007356.1 579163 579282 R hypothetical protein complement(579163..579282) Dehalococcoides sp. CBDB1 3623547 YP_307791.1 CDS cbdb_A714 NC_007356.1 579674 580840 R catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis; LL-diaminopimelate aminotransferase complement(579674..580840) Dehalococcoides sp. CBDB1 3622750 YP_307792.1 CDS dapF NC_007356.1 580827 581681 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(580827..581681) Dehalococcoides sp. CBDB1 3623172 YP_307793.1 CDS miaA NC_007356.1 581668 582654 R tRNA delta(2)-isopentenylpyrophosphatetransferase complement(581668..582654) Dehalococcoides sp. CBDB1 3623753 YP_307794.1 CDS tpiA NC_007356.1 582715 583476 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(582715..583476) Dehalococcoides sp. CBDB1 3624028 YP_307795.1 CDS cbdb_A718 NC_007356.1 583488 584693 R catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate; this enzyme does not require the cofactor 2,3-bisphosphoglycerate as a phosphate donor; BPG-independent PGAM; aPGAM; cofactor-independent phosphoglycerate mutase complement(583488..584693) Dehalococcoides sp. CBDB1 3623224 YP_307796.1 CDS pgk NC_007356.1 584686 585879 R phosphoglycerate kinase complement(584686..585879) Dehalococcoides sp. CBDB1 3623964 YP_307797.1 CDS dxs NC_007356.1 585979 587922 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(585979..587922) Dehalococcoides sp. CBDB1 3623188 YP_307798.1 CDS cbdb_A721 NC_007356.1 588068 588595 D small multi-drug export protein 588068..588595 Dehalococcoides sp. CBDB1 3623225 YP_307799.1 CDS cbdb_B18 NC_007356.1 588811 588999 D hypothetical protein 588811..588999 Dehalococcoides sp. CBDB1 3622959 YP_307800.1 CDS hpt NC_007356.1 589105 590553 R hypoxanthine phosphoribosyl transferase complement(589105..590553) Dehalococcoides sp. CBDB1 3622751 YP_307801.1 CDS rplT NC_007356.1 590618 590977 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(590618..590977) Dehalococcoides sp. CBDB1 3623365 YP_307802.1 CDS rpmI NC_007356.1 590996 591199 R 50S ribosomal protein L35 complement(590996..591199) Dehalococcoides sp. CBDB1 3623790 YP_307803.1 CDS infC NC_007356.1 591192 591665 R translation initiation factor IF-3 complement(591192..591665) Dehalococcoides sp. CBDB1 3623987 YP_307804.1 CDS thrS NC_007356.1 591816 593564 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(591816..593564) Dehalococcoides sp. CBDB1 3623355 YP_307805.1 CDS cbdb_A727 NC_007356.1 593691 596222 R hypothetical protein complement(593691..596222) Dehalococcoides sp. CBDB1 3623226 YP_307806.1 CDS cbdb_A728 NC_007356.1 596364 597770 R hypothetical protein complement(596364..597770) Dehalococcoides sp. CBDB1 3623227 YP_307807.1 CDS cbdb_A729 NC_007356.1 598456 598824 D hypothetical protein 598456..598824 Dehalococcoides sp. CBDB1 3623228 YP_307808.1 CDS cbdb_A730 NC_007356.1 598835 599497 D hypothetical protein 598835..599497 Dehalococcoides sp. CBDB1 3623229 YP_307809.1 CDS cbdb_A732 NC_007356.1 599494 600153 R 2,3-diketo-5-methylthio-1-phosphopentane phosphatase complement(599494..600153) Dehalococcoides sp. CBDB1 3623230 YP_307810.1 CDS def NC_007356.1 600177 600680 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(600177..600680) Dehalococcoides sp. CBDB1 3623174 YP_307811.1 CDS cbdb_A734 NC_007356.1 600966 601769 R hypothetical protein complement(600966..601769) Dehalococcoides sp. CBDB1 3623231 YP_307812.1 CDS cbdb_A735 NC_007356.1 601827 602228 R hypothetical protein complement(601827..602228) Dehalococcoides sp. CBDB1 3623232 YP_307813.1 CDS cbdb_A736 NC_007356.1 602238 602897 R hypothetical protein complement(602238..602897) Dehalococcoides sp. CBDB1 3623233 YP_307814.1 CDS cbdb_A737 NC_007356.1 603110 603274 D hypothetical protein 603110..603274 Dehalococcoides sp. CBDB1 3623234 YP_307815.1 CDS hppA NC_007356.1 603346 605472 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(603346..605472) Dehalococcoides sp. CBDB1 3623235 YP_307816.1 CDS cbdb_A739 NC_007356.1 605662 605892 D ATPase subunit C family protein 605662..605892 Dehalococcoides sp. CBDB1 3623236 YP_307817.1 CDS cbdb_A740 NC_007356.1 605960 606289 R hypothetical protein complement(605960..606289) Dehalococcoides sp. CBDB1 3623237 YP_307818.1 CDS cbdb_A741 NC_007356.1 606361 607500 R M50 family metallopeptidase complement(606361..607500) Dehalococcoides sp. CBDB1 3623238 YP_307819.1 CDS greA NC_007356.1 607527 608039 R transcription elongation factor GreA complement(607527..608039) Dehalococcoides sp. CBDB1 3623611 YP_307820.1 CDS cbdb_A744 NC_007356.1 608358 609497 R hypothetical protein complement(608358..609497) Dehalococcoides sp. CBDB1 3623239 YP_307821.1 CDS cbdb_A745 NC_007356.1 609638 609874 D hypothetical protein 609638..609874 Dehalococcoides sp. CBDB1 3623240 YP_307822.1 CDS cbdb_A747 NC_007356.1 609863 610603 R hypothetical protein complement(609863..610603) Dehalococcoides sp. CBDB1 3623241 YP_307823.1 CDS cbdb_A748 NC_007356.1 610596 611708 R M50 family metallopeptidase complement(610596..611708) Dehalococcoides sp. CBDB1 3623242 YP_307824.1 CDS thiC NC_007356.1 611744 613039 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(611744..613039) Dehalococcoides sp. CBDB1 3622865 YP_307825.1 CDS gidB NC_007356.1 613267 613974 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 613267..613974 Dehalococcoides sp. CBDB1 3623599 YP_307826.1 CDS cbdb_A751 NC_007356.1 614193 615722 D single-stranded nucleic acid binding R3H domain-containing protein 614193..615722 Dehalococcoides sp. CBDB1 3623243 YP_307827.1 CDS tmk NC_007356.1 615725 616351 D thymidylate kinase 615725..616351 Dehalococcoides sp. CBDB1 3624026 YP_307828.1 CDS mnmA NC_007356.1 616344 617417 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 616344..617417 Dehalococcoides sp. CBDB1 3624031 YP_307829.1 CDS rnhB NC_007356.1 617419 618057 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 617419..618057 Dehalococcoides sp. CBDB1 3623383 YP_307830.1 CDS cbdb_A757 NC_007356.1 618047 618412 D hypothetical protein 618047..618412 Dehalococcoides sp. CBDB1 3623244 YP_307831.1 CDS thiE NC_007356.1 618448 619506 D catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 618448..619506 Dehalococcoides sp. CBDB1 3623335 YP_307832.1 CDS cbdb_A759 NC_007356.1 619520 620152 D haloacid dehalogenase 619520..620152 Dehalococcoides sp. CBDB1 3623245 YP_307833.1 CDS hppA NC_007356.1 620157 622196 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 620157..622196 Dehalococcoides sp. CBDB1 3623588 YP_307834.1 CDS cbdb_A762 NC_007356.1 622208 622825 R metallo-beta-lactamase complement(622208..622825) Dehalococcoides sp. CBDB1 3623246 YP_307835.1 CDS cbdb_A763 NC_007356.1 622896 623477 D hypothetical protein 622896..623477 Dehalococcoides sp. CBDB1 3623247 YP_307836.1 CDS glyS NC_007356.1 623514 624815 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 623514..624815 Dehalococcoides sp. CBDB1 3623608 YP_307837.1 CDS sbcD NC_007356.1 624829 626076 D nuclease SbcD 624829..626076 Dehalococcoides sp. CBDB1 3623780 YP_307838.1 CDS cbdb_A767 NC_007356.1 626100 626849 D RsuA family pseudouridine synthase 626100..626849 Dehalococcoides sp. CBDB1 3623248 YP_307839.1 CDS cbdb_A768 NC_007356.1 626842 627576 R phosphoribosyltransferase complement(626842..627576) Dehalococcoides sp. CBDB1 3623249 YP_307840.1 CDS adeC NC_007356.1 627576 629291 R adenine deaminase complement(627576..629291) Dehalococcoides sp. CBDB1 3623262 YP_307841.1 CDS hpt NC_007356.1 629275 629820 R hypoxanthine phosphoribosyltransferase complement(629275..629820) Dehalococcoides sp. CBDB1 3622752 YP_307842.1 CDS cbdb_A772 NC_007356.1 630043 630774 D ABC transporter associated protein with signal peptide periplasmic substrate binding subunit 630043..630774 Dehalococcoides sp. CBDB1 3623250 YP_307843.1 CDS cbdb_A773 NC_007356.1 630869 631786 D ABC transporter ATP-binding protein 630869..631786 Dehalococcoides sp. CBDB1 3623251 YP_307844.1 CDS cbdb_A774 NC_007356.1 631783 632865 D ABC transporter permease 631783..632865 Dehalococcoides sp. CBDB1 3623252 YP_307845.1 CDS queA NC_007356.1 632948 633979 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(632948..633979) Dehalococcoides sp. CBDB1 3623210 YP_307846.1 CDS surE NC_007356.1 634142 634939 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 634142..634939 Dehalococcoides sp. CBDB1 3622858 YP_307847.1 CDS cbdb_B19 NC_007356.1 635051 635221 R hypothetical protein complement(635051..635221) Dehalococcoides sp. CBDB1 3622960 YP_307848.1 CDS cbdb_A778 NC_007356.1 635295 635627 D hypothetical protein 635295..635627 Dehalococcoides sp. CBDB1 3623253 YP_307849.1 CDS cbdb_A779 NC_007356.1 635796 636653 D hypothetical protein 635796..636653 Dehalococcoides sp. CBDB1 3623254 YP_307850.1 CDS panD NC_007356.1 636676 637050 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 636676..637050 Dehalococcoides sp. CBDB1 3623297 YP_307851.1 CDS panB NC_007356.1 637053 637892 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 637053..637892 Dehalococcoides sp. CBDB1 3623699 YP_307852.1 CDS panC NC_007356.1 637907 638713 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 637907..638713 Dehalococcoides sp. CBDB1 3623296 YP_307853.1 CDS cbdb_A783 NC_007356.1 638710 639972 R major facilitator family transporter complement(638710..639972) Dehalococcoides sp. CBDB1 3623255 YP_307854.1 CDS cbdb_A784 NC_007356.1 639972 640271 R hypothetical protein complement(639972..640271) Dehalococcoides sp. CBDB1 3623256 YP_307855.1 CDS cbdb_A785 NC_007356.1 640934 642436 D phytoene dehydrogenase 640934..642436 Dehalococcoides sp. CBDB1 3623132 YP_307856.1 CDS cbdb_A787 NC_007356.1 642433 643023 R PAP2 family protein complement(642433..643023) Dehalococcoides sp. CBDB1 3624136 YP_307857.1 CDS cbdb_A789 NC_007356.1 643241 643987 D ABC transporter ATP-binding protein 643241..643987 Dehalococcoides sp. CBDB1 3624137 YP_307858.1 CDS cbdb_A791 NC_007356.1 643980 644705 D ABC transporter permease 643980..644705 Dehalococcoides sp. CBDB1 3624138 YP_307859.1 CDS sufC NC_007356.1 644805 645560 D iron-regulated ABC transporter ATP-binding protein, SufC 644805..645560 Dehalococcoides sp. CBDB1 3622857 YP_307860.1 CDS sufB NC_007356.1 645542 646777 D iron-regulated ABC transporter subunit SufB-related 645542..646777 Dehalococcoides sp. CBDB1 3622856 YP_307861.1 CDS cbdb_A795 NC_007356.1 646846 647637 R ABC transporter ATP-binding protein complement(646846..647637) Dehalococcoides sp. CBDB1 3624139 YP_307862.1 CDS thyA NC_007356.1 647913 648566 R thymidylate synthase complement(647913..648566) Dehalococcoides sp. CBDB1 3623356 YP_307863.1 CDS cbdb_A797 NC_007356.1 648578 649285 R hypothetical protein complement(648578..649285) Dehalococcoides sp. CBDB1 3624140 YP_307864.1 CDS cbdb_A799 NC_007356.1 649294 649884 R hypothetical protein complement(649294..649884) Dehalococcoides sp. CBDB1 3624141 YP_307865.1 CDS cbdb_A800 NC_007356.1 649987 650403 D hypothetical protein 649987..650403 Dehalococcoides sp. CBDB1 3624142 YP_307866.1 CDS cbdb_A801 NC_007356.1 650413 651873 D hypothetical protein 650413..651873 Dehalococcoides sp. CBDB1 3624143 YP_307867.1 CDS cbdb_A802 NC_007356.1 651874 652488 D nitroreductase 651874..652488 Dehalococcoides sp. CBDB1 3624144 YP_307868.1 CDS cbdb_A803 NC_007356.1 652493 654094 R catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA; alpha-isopropylmalate/homocitrate synthase transferase complement(652493..654094) Dehalococcoides sp. CBDB1 3624145 YP_307869.1 CDS leuB NC_007356.1 654101 655198 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(654101..655198) Dehalococcoides sp. CBDB1 3624001 YP_307870.1 CDS leuD NC_007356.1 655199 655699 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit complement(655199..655699) Dehalococcoides sp. CBDB1 3624003 YP_307871.1 CDS leuC NC_007356.1 655771 657021 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit complement(655771..657021) Dehalococcoides sp. CBDB1 3624002 YP_307872.1 CDS cbdb_A807 NC_007356.1 657042 657443 R membrane protein, MgtC complement(657042..657443) Dehalococcoides sp. CBDB1 3624146 YP_307873.1 CDS leuA NC_007356.1 657459 658976 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(657459..658976) Dehalococcoides sp. CBDB1 3624000 YP_307874.1 CDS ilvC NC_007356.1 659152 660150 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(659152..660150) Dehalococcoides sp. CBDB1 3623545 YP_307875.1 CDS ilvH NC_007356.1 660169 660705 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(660169..660705) Dehalococcoides sp. CBDB1 3623984 YP_307876.1 CDS ilvB NC_007356.1 660681 662390 R acetolactate synthase, large subunit complement(660681..662390) Dehalococcoides sp. CBDB1 3623544 YP_307877.1 CDS ilvD NC_007356.1 662412 664079 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(662412..664079) Dehalococcoides sp. CBDB1 3623546 YP_307878.1 CDS cbdb_A816 NC_007356.1 664180 664821 R translation factor Sua5 complement(664180..664821) Dehalococcoides sp. CBDB1 3624147 YP_307879.1 CDS guaA NC_007356.1 665053 666654 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 665053..666654 Dehalococcoides sp. CBDB1 3622765 YP_307880.1 CDS cbdb_A818 NC_007356.1 666661 666972 D hypothetical protein 666661..666972 Dehalococcoides sp. CBDB1 3624148 YP_307881.1 CDS purD NC_007356.1 666992 668269 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 666992..668269 Dehalococcoides sp. CBDB1 3623664 YP_307882.1 CDS purE NC_007356.1 668260 668724 D phosphoribosylaminoimidazole carboxylase,catalytic subunit 668260..668724 Dehalococcoides sp. CBDB1 3623665 YP_307883.1 CDS purB NC_007356.1 668721 670076 D adenylosuccinate lyase 668721..670076 Dehalococcoides sp. CBDB1 3623662 YP_307884.1 CDS purC NC_007356.1 670077 670991 D phosphoribosylaminoimidazole-succinocarboxamide synthase 670077..670991 Dehalococcoides sp. CBDB1 3623663 YP_307885.1 CDS hisB NC_007356.1 671064 671654 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(671064..671654) Dehalococcoides sp. CBDB1 3623075 YP_307886.1 CDS hisC NC_007356.1 671656 672732 R histidinol-phosphate aminotransferase complement(671656..672732) Dehalococcoides sp. CBDB1 3623520 YP_307887.1 CDS hisD NC_007356.1 672745 674055 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(672745..674055) Dehalococcoides sp. CBDB1 3623070 YP_307888.1 CDS cbdb_A828 NC_007356.1 674062 675468 R ATP phosphoribosyltransferase complement(674062..675468) Dehalococcoides sp. CBDB1 3624149 YP_307889.1 CDS hisS NC_007356.1 675461 676699 R histidyl-tRNA synthetase complement(675461..676699) Dehalococcoides sp. CBDB1 3623901 YP_307890.1 CDS cbdb_A830 NC_007356.1 676840 677130 D hypothetical protein 676840..677130 Dehalococcoides sp. CBDB1 3624150 YP_307891.1 CDS cbdb_A831 NC_007356.1 677131 677934 D SPFH domain-containing protein 677131..677934 Dehalococcoides sp. CBDB1 3624151 YP_307892.1 CDS birA NC_007356.1 678004 678804 R biotin--acetyl-CoA-carboxylase ligase complement(678004..678804) Dehalococcoides sp. CBDB1 3622768 YP_307893.1 CDS cbdb_A833 NC_007356.1 678883 679437 D hypothetical protein 678883..679437 Dehalococcoides sp. CBDB1 3624152 YP_307894.1 CDS cbdb_A834 NC_007356.1 679476 680372 D ABC transporter ATP-binding protein 679476..680372 Dehalococcoides sp. CBDB1 3623906 YP_307895.1 CDS cbdb_A835 NC_007356.1 680332 681582 D ABC transporter permease 680332..681582 Dehalococcoides sp. CBDB1 3623647 YP_307896.1 CDS cbdb_A837 NC_007356.1 682091 682306 D hypothetical protein 682091..682306 Dehalococcoides sp. CBDB1 3623648 YP_307897.1 CDS cbdb_A838 NC_007356.1 682623 683846 D ABC transporter permease 682623..683846 Dehalococcoides sp. CBDB1 3623649 YP_307898.1 CDS cbdb_A839 NC_007356.1 683848 684558 D ABC transporter ATP-binding protein 683848..684558 Dehalococcoides sp. CBDB1 3623650 YP_307899.1 CDS cbdb_A840 NC_007356.1 684571 685707 D oxygen-independent coproporphyrinogen III oxidase 684571..685707 Dehalococcoides sp. CBDB1 3623651 YP_307900.1 CDS lepA NC_007356.1 685771 687588 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 685771..687588 Dehalococcoides sp. CBDB1 3623998 YP_307901.1 CDS echA NC_007356.1 687728 689674 D hydrogenase subunit EchA 687728..689674 Dehalococcoides sp. CBDB1 3623276 YP_307902.1 CDS echB NC_007356.1 689671 690519 D hydrogenase subunit EchB 689671..690519 Dehalococcoides sp. CBDB1 3623277 YP_307903.1 CDS echC NC_007356.1 690520 690987 D hydrogenase 4 subunit EchC 690520..690987 Dehalococcoides sp. CBDB1 3623278 YP_307904.1 CDS cbdb_A845 NC_007356.1 690980 691465 D hydrogenase subunit HymA 690980..691465 Dehalococcoides sp. CBDB1 3623302 YP_307905.1 CDS cbdb_A846 NC_007356.1 691479 693401 D hydrogenase subunit HymB 691479..693401 Dehalococcoides sp. CBDB1 3623303 YP_307906.1 CDS cbdb_A848 NC_007356.1 693401 693994 D hydrogenase subunit HymC 693401..693994 Dehalococcoides sp. CBDB1 3623304 YP_307907.1 CDS cbdb_A849 NC_007356.1 693997 695382 D hydrogenase subunit 693997..695382 Dehalococcoides sp. CBDB1 3623305 YP_307908.1 CDS cbdb_A850 NC_007356.1 695383 696462 D hydrogenase 4 subunit EchE 695383..696462 Dehalococcoides sp. CBDB1 3623306 YP_307909.1 CDS cbdb_A851 NC_007356.1 696472 696816 D hydrogenase subunit EchF 696472..696816 Dehalococcoides sp. CBDB1 3623307 YP_307910.1 CDS cbdb_A853 NC_007356.1 696898 697827 R lysyl-tRNA synthetase complement(696898..697827) Dehalococcoides sp. CBDB1 3623308 YP_307911.1 CDS efp NC_007356.1 697833 698399 R translation elongation factor P complement(697833..698399) Dehalococcoides sp. CBDB1 3623280 YP_307912.1 CDS rdhR NC_007356.1 698589 699074 D MarR family transcriptional regulator 698589..699074 Dehalococcoides sp. CBDB1 3623402 YP_307913.1 CDS cbdb_A856 NC_007356.1 699079 702003 D MmpL domain-containing protein 699079..702003 Dehalococcoides sp. CBDB1 3622887 YP_307914.1 CDS cbdb_A857 NC_007356.1 702049 702693 R DNA-binding protein complement(702049..702693) Dehalococcoides sp. CBDB1 3622888 YP_307915.1 CDS cbdb_A858 NC_007356.1 703199 703534 R hypothetical protein complement(703199..703534) Dehalococcoides sp. CBDB1 3622889 YP_307916.1 CDS arsB NC_007356.1 703898 705172 D arsenical pump membrane protein 703898..705172 Dehalococcoides sp. CBDB1 3622649 YP_307917.1 CDS cbdb_A860 NC_007356.1 705174 706559 D hypothetical protein 705174..706559 Dehalococcoides sp. CBDB1 3622891 YP_307918.1 CDS cbdb_A861 NC_007356.1 706709 707818 D aminopeptidase 706709..707818 Dehalococcoides sp. CBDB1 3622892 YP_307919.1 CDS cbdb_A862 NC_007356.1 707855 708526 D phosphoribosyltransferase 707855..708526 Dehalococcoides sp. CBDB1 3622893 YP_307920.1 CDS cbdb_A863 NC_007356.1 708734 709189 D hypothetical protein 708734..709189 Dehalococcoides sp. CBDB1 3622894 YP_307921.1 CDS cbdb_A864 NC_007356.1 709251 709946 D hypothetical protein 709251..709946 Dehalococcoides sp. CBDB1 3622895 YP_307922.1 CDS cbdb_A865 NC_007356.1 709965 710771 R hypothetical protein complement(709965..710771) Dehalococcoides sp. CBDB1 3622896 YP_307923.1 CDS cbdb_A867 NC_007356.1 710755 711663 R hypothetical protein complement(710755..711663) Dehalococcoides sp. CBDB1 3622897 YP_307924.1 CDS cbdb_A868 NC_007356.1 711880 712080 R hypothetical protein complement(711880..712080) Dehalococcoides sp. CBDB1 3622898 YP_307925.1 CDS cbdb_A869 NC_007356.1 712107 712361 R hypothetical protein complement(712107..712361) Dehalococcoides sp. CBDB1 3622899 YP_307926.1 CDS cbdb_A870 NC_007356.1 712519 713271 R hypothetical protein complement(712519..713271) Dehalococcoides sp. CBDB1 3622900 YP_307927.1 CDS cbdb_A871 NC_007356.1 713281 713691 R (Fe-S)-binding protein complement(713281..713691) Dehalococcoides sp. CBDB1 3622901 YP_307928.1 CDS cbdb_A872 NC_007356.1 713700 714926 R hypothetical protein complement(713700..714926) Dehalococcoides sp. CBDB1 3622902 YP_307929.1 CDS pilT NC_007356.1 715147 716229 D twitching mobility protein 715147..716229 Dehalococcoides sp. CBDB1 3623973 YP_307930.1 CDS cbdb_A874 NC_007356.1 716512 716883 D proton-translocating NADH-quinone oxidoreductase subunit A 716512..716883 Dehalococcoides sp. CBDB1 3622903 YP_307931.1 CDS nuoB NC_007356.1 716874 717476 D proton-translocating NADH-quinone oxidoreductase subunit B 716874..717476 Dehalococcoides sp. CBDB1 3623687 YP_307932.1 CDS nuoC NC_007356.1 717481 717930 D proton-translocating NADH-quinone oxidoreductase subunit C 717481..717930 Dehalococcoides sp. CBDB1 3623688 YP_307933.1 CDS nuoD NC_007356.1 717920 719023 D proton-translocating NADH-quinone oxidoreductase subunit D 717920..719023 Dehalococcoides sp. CBDB1 3623689 YP_307934.1 CDS nuoH NC_007356.1 719023 720084 D proton-translocating NADH-quinone oxidoreductase subunit H 719023..720084 Dehalococcoides sp. CBDB1 3623690 YP_307935.1 CDS cbdb_A880 NC_007356.1 720110 720619 D proton-translocating NADH-quinone oxidoreductase subunit I 720110..720619 Dehalococcoides sp. CBDB1 3622904 YP_307936.1 CDS cbdb_A881 NC_007356.1 720626 721108 D proton-translocating NADH-quinone oxidoreductase subunit J 720626..721108 Dehalococcoides sp. CBDB1 3622905 YP_307937.1 CDS cbdb_A882 NC_007356.1 721110 721415 D proton-translocating NADH-quinone oxidoreductase subunit K 721110..721415 Dehalococcoides sp. CBDB1 3622906 YP_307938.1 CDS cbdb_A883 NC_007356.1 721432 723396 D proton-translocating NADH-quinone oxidoreductase subunit L 721432..723396 Dehalococcoides sp. CBDB1 3622907 YP_307939.1 CDS nuoM NC_007356.1 723406 724899 D proton-translocating NADH-quinone oxidoreductase subunit M 723406..724899 Dehalococcoides sp. CBDB1 3623691 YP_307940.1 CDS nuoN NC_007356.1 724918 726363 D proton-translocating NADH-quinone oxidoreductase subunit N 724918..726363 Dehalococcoides sp. CBDB1 3623692 YP_307941.1 CDS cbdb_A887 NC_007356.1 726380 727168 D TatD family hydrolase 726380..727168 Dehalococcoides sp. CBDB1 3622908 YP_307942.1 CDS nth NC_007356.1 727148 727804 R endonuclease III complement(727148..727804) Dehalococcoides sp. CBDB1 3623686 YP_307943.1 CDS cobQ NC_007356.1 727929 729440 D cobyric acid synthase CobQ 727929..729440 Dehalococcoides sp. CBDB1 3623155 YP_307944.1 CDS cbdb_A891 NC_007356.1 729437 729847 D thioesterase 729437..729847 Dehalococcoides sp. CBDB1 3622909 YP_307945.1 CDS cbdb_A892 NC_007356.1 729855 730685 R branched chain amino acid ABC transporter ATP-binding protein complement(729855..730685) Dehalococcoides sp. CBDB1 3622910 YP_307946.1 CDS cbdb_A893 NC_007356.1 730672 730938 R hypothetical protein complement(730672..730938) Dehalococcoides sp. CBDB1 3622911 YP_307947.1 CDS cbdb_A894 NC_007356.1 730948 732237 R acyl-CoA synthetase complement(730948..732237) Dehalococcoides sp. CBDB1 3622912 YP_307948.1 CDS cbdb_A895 NC_007356.1 732228 733019 R branched chain amino acid ABC transporter ATP-binding protein complement(732228..733019) Dehalococcoides sp. CBDB1 3622913 YP_307949.1 CDS cbdb_A896 NC_007356.1 733040 734326 R branched chain amino acid ABC transporter substrate-binding protein complement(733040..734326) Dehalococcoides sp. CBDB1 3623093 YP_307950.1 CDS cbdb_A897 NC_007356.1 734415 735707 R branched chain amino acid ABC transporter substrate-binding protein complement(734415..735707) Dehalococcoides sp. CBDB1 3623094 YP_307951.1 CDS cbdb_A898 NC_007356.1 735750 736802 R branched-chain amino acid ABC transporter permease complement(735750..736802) Dehalococcoides sp. CBDB1 3623095 YP_307952.1 CDS cbdb_A899 NC_007356.1 736805 737689 R branched-chain amino acid ABC transporter permease complement(736805..737689) Dehalococcoides sp. CBDB1 3623096 YP_307953.1 CDS cbdb_A901 NC_007356.1 737699 739591 R acyl-CoA synthetase complement(737699..739591) Dehalococcoides sp. CBDB1 3623098 YP_307954.1 CDS iorA NC_007356.1 739922 741718 D indolepyruvate ferredoxin oxidoreductase subunit alpha 739922..741718 Dehalococcoides sp. CBDB1 3623988 YP_307955.1 CDS iorB NC_007356.1 741723 742316 D Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit beta 741723..742316 Dehalococcoides sp. CBDB1 3623989 YP_307956.1 CDS cbdb_A904 NC_007356.1 742313 742801 R hypothetical protein complement(742313..742801) Dehalococcoides sp. CBDB1 3623099 YP_307957.1 CDS cbdb_A905 NC_007356.1 742816 743016 R hypothetical protein complement(742816..743016) Dehalococcoides sp. CBDB1 3623100 YP_307958.1 CDS cbdb_A906 NC_007356.1 743018 743401 R NifU domain-containing protein complement(743018..743401) Dehalococcoides sp. CBDB1 3623101 YP_307959.1 CDS cbdb_A907 NC_007356.1 743570 743824 D hypothetical protein 743570..743824 Dehalococcoides sp. CBDB1 3623102 YP_307960.1 CDS cbdb_A908 NC_007356.1 743834 746320 D copper-translocating P-type ATPase 743834..746320 Dehalococcoides sp. CBDB1 3623103 YP_307961.1 CDS cbdb_A909 NC_007356.1 746418 746906 D heat shock protein 20 746418..746906 Dehalococcoides sp. CBDB1 3623104 YP_307962.1 CDS cbdb_A911 NC_007356.1 746959 747786 D bacterioferritin domain-containing protein 746959..747786 Dehalococcoides sp. CBDB1 3623105 YP_307963.1 CDS sodA NC_007356.1 747816 748394 D superoxide dismutase 747816..748394 Dehalococcoides sp. CBDB1 3622853 YP_307964.1 CDS cbdb_A914 NC_007356.1 748492 749262 R hypothetical protein complement(748492..749262) Dehalococcoides sp. CBDB1 3623106 YP_307965.1 CDS cbdb_A915 NC_007356.1 749695 749997 R Smr domain-containing protein complement(749695..749997) Dehalococcoides sp. CBDB1 3623107 YP_307966.1 CDS hisF NC_007356.1 750153 750959 D Imidazole glycerol phosphate synthase cyclase subunit 750153..750959 Dehalococcoides sp. CBDB1 3623897 YP_307967.1 CDS cbdb_A918 NC_007356.1 751018 752070 D hypothetical protein 751018..752070 Dehalococcoides sp. CBDB1 3623108 YP_307968.1 CDS cbdb_A919 NC_007356.1 752124 753374 R MiaB family tRNA modification protein complement(752124..753374) Dehalococcoides sp. CBDB1 3623109 YP_307969.1 CDS fabF NC_007356.1 753463 754731 D 3-oxoacyl-ACP synthase 753463..754731 Dehalococcoides sp. CBDB1 3623284 YP_307970.1 CDS recJ NC_007356.1 754715 756415 D single-stranded-DNA-specific exonuclease RecJ 754715..756415 Dehalococcoides sp. CBDB1 3623405 YP_307971.1 CDS cbdb_A924 NC_007356.1 756431 757063 D hypothetical protein 756431..757063 Dehalococcoides sp. CBDB1 3623111 YP_307972.1 CDS lgt NC_007356.1 757243 758025 R prolipoprotein diacylglyceryl transferase complement(757243..758025) Dehalococcoides sp. CBDB1 3624006 YP_307973.1 CDS cbdb_A928 NC_007356.1 758096 760390 R ATP-dependent RNA helicase, DEAD complement(758096..760390) Dehalococcoides sp. CBDB1 3623112 YP_307974.1 CDS cbdb_A929 NC_007356.1 760402 760692 R hypothetical protein complement(760402..760692) Dehalococcoides sp. CBDB1 3622914 YP_307975.1 CDS rpsO NC_007356.1 760877 761140 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 760877..761140 Dehalococcoides sp. CBDB1 3623770 YP_307976.1 CDS pnp NC_007356.1 761182 763344 D polynucleotide phosphorylase 761182..763344 Dehalococcoides sp. CBDB1 3623977 YP_307977.1 CDS dapB NC_007356.1 763361 764152 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 763361..764152 Dehalococcoides sp. CBDB1 3623171 YP_307978.1 CDS asd NC_007356.1 764163 765179 D aspartate-semialdehyde dehydrogenase 764163..765179 Dehalococcoides sp. CBDB1 3622651 YP_307979.1 CDS dapA NC_007356.1 765182 766075 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 765182..766075 Dehalococcoides sp. CBDB1 3623170 YP_307980.1 CDS cbdb_A936 NC_007356.1 766077 766742 D puromycin N-acetyltransferase,-like protein 766077..766742 Dehalococcoides sp. CBDB1 3622915 YP_307981.1 CDS cbdb_A937 NC_007356.1 766702 767331 D acetyltransferase 766702..767331 Dehalococcoides sp. CBDB1 3622916 YP_307982.1 CDS purA NC_007356.1 767451 768722 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(767451..768722) Dehalococcoides sp. CBDB1 3623661 YP_307983.1 CDS cbdb_A940 NC_007356.1 768828 769409 R CDP-alcohol phosphatidyltransferase complement(768828..769409) Dehalococcoides sp. CBDB1 3622917 YP_307984.1 CDS cbdb_A942 NC_007356.1 769454 770602 R glycoside hydrolase family protein complement(769454..770602) Dehalococcoides sp. CBDB1 3622918 YP_307985.1 CDS cbdb_A943 NC_007356.1 770647 771759 R myo-inositol-1-phosphate synthase complement(770647..771759) Dehalococcoides sp. CBDB1 3622919 YP_307986.1 CDS cbdb_A944 NC_007356.1 771903 772076 R hypothetical protein complement(771903..772076) Dehalococcoides sp. CBDB1 3622920 YP_307987.1 CDS truB NC_007356.1 772123 773025 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(772123..773025) Dehalococcoides sp. CBDB1 3623816 YP_307988.1 CDS rbfA NC_007356.1 773028 773384 R ribosome-binding factor A complement(773028..773384) Dehalococcoides sp. CBDB1 3623212 YP_307989.1 CDS infB NC_007356.1 773384 775165 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(773384..775165) Dehalococcoides sp. CBDB1 3623986 YP_307990.1 CDS cbdb_A948 NC_007356.1 775146 775460 R hypothetical protein complement(775146..775460) Dehalococcoides sp. CBDB1 3622921 YP_307991.1 CDS nusA NC_007356.1 775435 776910 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(775435..776910) Dehalococcoides sp. CBDB1 3623693 YP_307992.1 CDS cbdb_A950 NC_007356.1 777100 778620 D Mg chelatase,-like protein 777100..778620 Dehalococcoides sp. CBDB1 3622922 YP_307993.1 CDS cbdb_A951 NC_007356.1 778622 779497 D acetyltransferase 778622..779497 Dehalococcoides sp. CBDB1 3622923 YP_307994.1 CDS cbdb_A952 NC_007356.1 779542 779859 R acetyltransferase complement(779542..779859) Dehalococcoides sp. CBDB1 3622924 YP_307995.1 CDS cbdb_A953 NC_007356.1 780078 780722 D hypothetical protein 780078..780722 Dehalococcoides sp. CBDB1 3622925 YP_307996.1 CDS rplL NC_007356.1 780803 781174 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(780803..781174) Dehalococcoides sp. CBDB1 3623396 YP_307997.1 CDS rplJ NC_007356.1 781208 781738 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(781208..781738) Dehalococcoides sp. CBDB1 3623394 YP_307998.1 CDS rplA NC_007356.1 781890 782603 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(781890..782603) Dehalococcoides sp. CBDB1 3623387 YP_307999.1 CDS rplK NC_007356.1 782607 783029 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(782607..783029) Dehalococcoides sp. CBDB1 3623395 YP_308000.1 CDS nusG NC_007356.1 783048 783581 R transcription antitermination protein NusG complement(783048..783581) Dehalococcoides sp. CBDB1 3623695 YP_308001.1 CDS secE NC_007356.1 783628 783846 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(783628..783846) Dehalococcoides sp. CBDB1 3623783 YP_308002.1 CDS rpmG NC_007356.1 783870 784037 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 complement(783870..784037) Dehalococcoides sp. CBDB1 3623376 YP_308003.1 CDS tuf NC_007356.1 784039 785241 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(784039..785241) Dehalococcoides sp. CBDB1 3623820 YP_308004.1 CDS cbdb_A962 NC_007356.1 785767 786480 R hypothetical protein complement(785767..786480) Dehalococcoides sp. CBDB1 3622926 YP_308005.1 CDS cbdb_A963 NC_007356.1 786493 787710 R glycoside hydrolase family protein complement(786493..787710) Dehalococcoides sp. CBDB1 3622927 YP_308006.1 CDS cbdb_A964 NC_007356.1 787703 788692 R hypothetical protein complement(787703..788692) Dehalococcoides sp. CBDB1 3622928 YP_308007.1 CDS cbdb_B21 NC_007356.1 788694 788810 R hypothetical protein complement(788694..788810) Dehalococcoides sp. CBDB1 3622962 YP_308008.1 CDS cbdb_A966 NC_007356.1 788822 789160 D ArsR family transcriptional regulator 788822..789160 Dehalococcoides sp. CBDB1 3622929 YP_308009.1 CDS cbdb_A968 NC_007356.1 789160 790191 D permease 789160..790191 Dehalococcoides sp. CBDB1 3622930 YP_308010.1 CDS cbdb_A969 NC_007356.1 790209 790451 D redox-active disulfide protein 2 790209..790451 Dehalococcoides sp. CBDB1 3622931 YP_308011.1 CDS cbdb_A971 NC_007356.1 790525 791337 R hypothetical protein complement(790525..791337) Dehalococcoides sp. CBDB1 3622932 YP_308012.1 CDS cbdb_A973 NC_007356.1 791661 792932 R major facilitator family transporter complement(791661..792932) Dehalococcoides sp. CBDB1 3622933 YP_308013.1 CDS cbdb_A974 NC_007356.1 793080 793220 R hypothetical protein complement(793080..793220) Dehalococcoides sp. CBDB1 3622934 YP_308014.1 CDS cbdb_A975 NC_007356.1 793286 793525 D hypothetical protein 793286..793525 Dehalococcoides sp. CBDB1 3622935 YP_308015.1 CDS cbdb_A976 NC_007356.1 793509 794129 R hypothetical protein complement(793509..794129) Dehalococcoides sp. CBDB1 3622936 YP_308016.1 CDS cbdb_A979 NC_007356.1 794234 794476 D hypothetical protein 794234..794476 Dehalococcoides sp. CBDB1 3622937 YP_308017.1 CDS cbdb_A981 NC_007356.1 794660 795169 R hypothetical protein complement(794660..795169) Dehalococcoides sp. CBDB1 3622939 YP_308018.1 CDS cbdb_A982 NC_007356.1 795210 795446 R hypothetical protein complement(795210..795446) Dehalococcoides sp. CBDB1 3622940 YP_308019.1 CDS cbdb_A983 NC_007356.1 795696 795947 R hypothetical protein complement(795696..795947) Dehalococcoides sp. CBDB1 3622941 YP_308020.1 CDS cbdb_A985 NC_007356.1 796149 796538 R ACT domain-containing protein complement(796149..796538) Dehalococcoides sp. CBDB1 3622942 YP_308021.1 CDS cbdb_A988 NC_007356.1 796559 797878 R acyl-CoA synthetase complement(796559..797878) Dehalococcoides sp. CBDB1 3622943 YP_308022.1 CDS cbdb_A989 NC_007356.1 798106 801894 R sensor histidine kinase/response regulator complement(798106..801894) Dehalococcoides sp. CBDB1 3622944 YP_308023.1 CDS cbdb_A990 NC_007356.1 802165 802734 R hypothetical protein complement(802165..802734) Dehalococcoides sp. CBDB1 3622946 YP_308024.1 CDS cbdb_A991 NC_007356.1 802779 802880 R hypothetical protein complement(802779..802880) Dehalococcoides sp. CBDB1 3622947 YP_308025.1 CDS cbdb_A992 NC_007356.1 805189 805350 R hypothetical protein complement(805189..805350) Dehalococcoides sp. CBDB1 3622948 YP_308026.1 CDS cbdb_A993 NC_007356.1 805537 805704 R hypothetical protein complement(805537..805704) Dehalococcoides sp. CBDB1 3622949 YP_308027.1 CDS rnc NC_007356.1 806931 807644 D ribonuclease III 806931..807644 Dehalococcoides sp. CBDB1 3623382 YP_308028.1 CDS cbdb_A995 NC_007356.1 807674 807814 D hypothetical protein 807674..807814 Dehalococcoides sp. CBDB1 3622950 YP_308029.1 CDS cbdb_A998 NC_007356.1 807836 808111 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 807836..808111 Dehalococcoides sp. CBDB1 3622951 YP_308030.1 CDS cbdb_A999 NC_007356.1 808138 808872 R hypothetical protein complement(808138..808872) Dehalococcoides sp. CBDB1 3622952 YP_308031.1 CDS cbdb_A1000 NC_007356.1 808869 809123 R hypothetical protein complement(808869..809123) Dehalococcoides sp. CBDB1 3623437 YP_308032.1 CDS pepA NC_007356.1 809403 810896 R cytosol aminopeptidase complement(809403..810896) Dehalococcoides sp. CBDB1 3623963 YP_308033.1 CDS cbdb_A1002 NC_007356.1 810896 811498 R hypothetical protein complement(810896..811498) Dehalococcoides sp. CBDB1 3623438 YP_308034.1 CDS cbdb_A1004 NC_007356.1 811547 812404 R degV family protein complement(811547..812404) Dehalococcoides sp. CBDB1 3623439 YP_308035.1 CDS cbdb_A1006 NC_007356.1 812487 814004 R acyl-CoA synthetase complement(812487..814004) Dehalococcoides sp. CBDB1 3623440 YP_308036.1 CDS cbdb_A1008 NC_007356.1 814574 815938 D catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 814574..815938 Dehalococcoides sp. CBDB1 3623441 YP_308037.1 CDS cbdb_A1009 NC_007356.1 816061 816876 D serine protease DegP 816061..816876 Dehalococcoides sp. CBDB1 3623627 YP_308038.1 CDS cbdb_A1011 NC_007356.1 816885 818018 D serine protease DegP 816885..818018 Dehalococcoides sp. CBDB1 3623629 YP_308039.1 CDS ileS NC_007356.1 818031 821075 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(818031..821075) Dehalococcoides sp. CBDB1 3623543 YP_308040.1 CDS cbdb_A1014 NC_007356.1 821378 821959 R SpoIIIJ-associated protein Jag complement(821378..821959) Dehalococcoides sp. CBDB1 3623630 YP_308041.1 CDS cbdb_A1015 NC_007356.1 821970 822917 R inner membrane protein, 60 kDa complement(821970..822917) Dehalococcoides sp. CBDB1 3623631 YP_308042.1 CDS cbdb_A1016 NC_007356.1 822929 824044 R hypothetical protein complement(822929..824044) Dehalococcoides sp. CBDB1 3623632 YP_308043.1 CDS rnpA NC_007356.1 824238 824600 R ribonuclease P protein component complement(824238..824600) Dehalococcoides sp. CBDB1 3623384 YP_308044.1 CDS rpmH NC_007356.1 824659 824799 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(824659..824799) Dehalococcoides sp. CBDB1 3623789 YP_308045.1 CDS rpsR NC_007356.1 824835 825278 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(824835..825278) Dehalococcoides sp. CBDB1 3623773 YP_308046.1 CDS ssb NC_007356.1 825313 825720 R single-strand binding protein complement(825313..825720) Dehalococcoides sp. CBDB1 3622855 YP_308047.1 CDS rpsF NC_007356.1 825771 826100 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(825771..826100) Dehalococcoides sp. CBDB1 3623800 YP_308048.1 CDS cbdb_A1021 NC_007356.1 826622 826864 D hypothetical protein 826622..826864 Dehalococcoides sp. CBDB1 3623634 YP_308049.1 CDS cbdb_A1023 NC_007356.1 826937 827314 R translation initiation inhibitor complement(826937..827314) Dehalococcoides sp. CBDB1 3623635 YP_308050.1 CDS cbdb_A1024 NC_007356.1 827445 828770 D hypothetical protein 827445..828770 Dehalococcoides sp. CBDB1 3623636 YP_308051.1 CDS cbdb_A1025 NC_007356.1 828859 829998 R cell division protein complement(828859..829998) Dehalococcoides sp. CBDB1 3623637 YP_308052.1 CDS recN NC_007356.1 830182 831948 D DNA repair protein RecN 830182..831948 Dehalococcoides sp. CBDB1 3623406 YP_308053.1 CDS cbdb_A1028 NC_007356.1 831951 832814 D transporter 831951..832814 Dehalococcoides sp. CBDB1 3623638 YP_308054.1 CDS cbdb_A1030 NC_007356.1 832921 833445 D hypothetical protein 832921..833445 Dehalococcoides sp. CBDB1 3623640 YP_308055.1 CDS cbdb_A1032 NC_007356.1 833548 834231 D DNA-binding response regulator 833548..834231 Dehalococcoides sp. CBDB1 3623641 YP_308056.1 CDS cbdb_A1033 NC_007356.1 834239 835660 D sensor histidine kinase 834239..835660 Dehalococcoides sp. CBDB1 3623642 YP_308057.1 CDS cbdb_A1034 NC_007356.1 835685 836662 R peptide ABC transporter ATP-binding protein complement(835685..836662) Dehalococcoides sp. CBDB1 3623643 YP_308058.1 CDS cbdb_A1036 NC_007356.1 836647 837654 R peptide ABC transporter ATP-binding protein complement(836647..837654) Dehalococcoides sp. CBDB1 3623644 YP_308059.1 CDS cbdb_A1037 NC_007356.1 837656 838561 R peptide ABC transporter permease complement(837656..838561) Dehalococcoides sp. CBDB1 3623645 YP_308060.1 CDS cbdb_A1038 NC_007356.1 838569 839486 R peptide ABC transporter permease complement(838569..839486) Dehalococcoides sp. CBDB1 3623646 YP_308061.1 CDS cbdb_A1039 NC_007356.1 839563 841239 R dipeptide/oligopeptide/nickel ABC transporter periplasmic protein complement(839563..841239) Dehalococcoides sp. CBDB1 3623559 YP_308062.1 CDS cbdb_A1040 NC_007356.1 841485 842891 D metallo-beta-lactamase 841485..842891 Dehalococcoides sp. CBDB1 3623561 YP_308063.1 CDS cbdb_A1041 NC_007356.1 843260 843958 R LuxR family transcriptional regulator complement(843260..843958) Dehalococcoides sp. CBDB1 3623562 YP_308064.1 CDS cbdb_A1042 NC_007356.1 843955 847644 R sensor histidine kinase complement(843955..847644) Dehalococcoides sp. CBDB1 3623563 YP_308065.1 CDS cbdb_A1043 NC_007356.1 847778 848959 D RNA methyltransferase 847778..848959 Dehalococcoides sp. CBDB1 3623564 YP_308066.1 CDS cbdb_A1044 NC_007356.1 848995 849384 D hypothetical protein 848995..849384 Dehalococcoides sp. CBDB1 3623565 YP_308067.1 CDS cbdb_A1045 NC_007356.1 849381 849530 D hypothetical protein 849381..849530 Dehalococcoides sp. CBDB1 3623566 YP_308068.1 CDS maF NC_007356.1 849559 850233 D maf-like protein 849559..850233 Dehalococcoides sp. CBDB1 3623743 YP_308069.1 CDS cbdb_A1048 NC_007356.1 850278 850703 R hypothetical protein complement(850278..850703) Dehalococcoides sp. CBDB1 3623567 YP_308070.1 CDS nadE NC_007356.1 850731 852431 R glutamine-dependent NAD(+) synthetase complement(850731..852431) Dehalococcoides sp. CBDB1 3623768 YP_308071.1 CDS glnA NC_007356.1 852516 853847 R glutamine synthetase, type I complement(852516..853847) Dehalococcoides sp. CBDB1 3623601 YP_308072.1 CDS glnB NC_007356.1 853974 854312 R P2-like signal transmitter protein GlnB complement(853974..854312) Dehalococcoides sp. CBDB1 3623603 YP_308073.1 CDS amt NC_007356.1 854309 855535 R ammonium transporter complement(854309..855535) Dehalococcoides sp. CBDB1 3623266 YP_308074.1 CDS cbdb_A1053 NC_007356.1 855674 856345 R response regulator complement(855674..856345) Dehalococcoides sp. CBDB1 3623569 YP_308075.1 CDS cbdb_A1054 NC_007356.1 856367 857137 R hypothetical protein complement(856367..857137) Dehalococcoides sp. CBDB1 3623570 YP_308076.1 CDS cbdb_A1055 NC_007356.1 857138 858640 R glutamate synthase subunit alpha complement(857138..858640) Dehalococcoides sp. CBDB1 3623571 YP_308077.1 CDS hisF NC_007356.1 858642 859403 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(858642..859403) Dehalococcoides sp. CBDB1 3623071 YP_308078.1 CDS cbdb_A1058 NC_007356.1 859397 860527 R glutamine amidotransferase complement(859397..860527) Dehalococcoides sp. CBDB1 3623572 YP_308079.1 CDS cbdb_A1059 NC_007356.1 860540 861847 R pyridine nucleotide-disulfide oxidoreductase complement(860540..861847) Dehalococcoides sp. CBDB1 3623573 YP_308080.1 CDS hisH NC_007356.1 861844 862461 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(861844..862461) Dehalococcoides sp. CBDB1 3623898 YP_308081.1 CDS cbdb_A1061 NC_007356.1 862477 862908 R (Fe-S)-binding protein complement(862477..862908) Dehalococcoides sp. CBDB1 3623575 YP_308082.1 CDS cbdb_A1062 NC_007356.1 863040 863621 R hypothetical protein complement(863040..863621) Dehalococcoides sp. CBDB1 3623576 YP_308083.1 CDS cysK NC_007356.1 863743 864705 D O-acetylserine(thiol)-lyase-A-like protein 863743..864705 Dehalococcoides sp. CBDB1 3623168 YP_308084.1 CDS cbdb_A1064 NC_007356.1 864805 865311 R hypothetical protein complement(864805..865311) Dehalococcoides sp. CBDB1 3623577 YP_308085.1 CDS rdhI NC_007356.1 865479 866300 D radical SAM domain-containing protein 865479..866300 Dehalococcoides sp. CBDB1 3623420 YP_308086.1 CDS cobD NC_007356.1 866351 867274 D cobalamin biosynthesis protein 866351..867274 Dehalococcoides sp. CBDB1 3623152 YP_308087.1 CDS cobA NC_007356.1 867310 867858 D cob(I)alamin adenosyltransferase 867310..867858 Dehalococcoides sp. CBDB1 3623658 YP_308088.1 CDS cbdb_A1070 NC_007356.1 867858 868640 D carbon-nitrogen hydrolase 867858..868640 Dehalococcoides sp. CBDB1 3623579 YP_308089.1 CDS cbdb_A1071 NC_007356.1 868674 870113 D glycosyl transferase family protein 868674..870113 Dehalococcoides sp. CBDB1 3623580 YP_308090.1 CDS cbdb_A1072 NC_007356.1 870123 870785 D hypothetical protein 870123..870785 Dehalococcoides sp. CBDB1 3623581 YP_308091.1 CDS cbdb_A1073 NC_007356.1 870782 871603 R hypothetical protein complement(870782..871603) Dehalococcoides sp. CBDB1 3623582 YP_308092.1 CDS cbdb_A1074 NC_007356.1 871756 872487 D hypothetical protein 871756..872487 Dehalococcoides sp. CBDB1 3623583 YP_308093.1 CDS cbdb_A1075 NC_007356.1 872580 873323 R LuxR family transcriptional regulator complement(872580..873323) Dehalococcoides sp. CBDB1 3623584 YP_308094.1 CDS cbdb_A1077 NC_007356.1 873532 876207 R acetyl-CoA synthetase complement(873532..876207) Dehalococcoides sp. CBDB1 3623585 YP_308095.1 CDS cbdb_B23 NC_007356.1 876257 876340 R hypothetical protein complement(876257..876340) Dehalococcoides sp. CBDB1 3622963 YP_308096.1 CDS cbdb_A1078 NC_007356.1 876339 876509 D hypothetical protein 876339..876509 Dehalococcoides sp. CBDB1 3623586 YP_308097.1 CDS cbdb_A1080 NC_007356.1 876686 877126 D hypothetical protein 876686..877126 Dehalococcoides sp. CBDB1 3623340 YP_308098.1 CDS cbdb_A1081 NC_007356.1 877302 877709 R FUR family transcriptional regulator complement(877302..877709) Dehalococcoides sp. CBDB1 3623341 YP_308099.1 CDS cbdb_A1082 NC_007356.1 877850 878635 R hypothetical protein complement(877850..878635) Dehalococcoides sp. CBDB1 3623342 YP_308100.1 CDS cbdb_A1083 NC_007356.1 878796 879344 D PadR-like family transcriptional regulator 878796..879344 Dehalococcoides sp. CBDB1 3622866 YP_308101.1 CDS cbdb_A1085 NC_007356.1 879535 880014 D MarR family transcriptional regulator 879535..880014 Dehalococcoides sp. CBDB1 3622867 YP_308102.1 CDS cbdb_A1086 NC_007356.1 880058 882283 D ABC transporter ATP-binding protein/permease 880058..882283 Dehalococcoides sp. CBDB1 3622868 YP_308103.1 CDS cbdb_A1087 NC_007356.1 882280 884190 D ABC transporter ATP-binding protein/permease 882280..884190 Dehalococcoides sp. CBDB1 3622869 YP_308104.1 CDS cbdb_A1088 NC_007356.1 884287 884595 D (Fe-S)-binding protein 884287..884595 Dehalococcoides sp. CBDB1 3622870 YP_308105.1 CDS cbdb_A1089 NC_007356.1 884626 884742 D hypothetical protein 884626..884742 Dehalococcoides sp. CBDB1 3622871 YP_308106.1 CDS rdhR NC_007356.1 885119 885580 R MarR family transcriptional regulator complement(885119..885580) Dehalococcoides sp. CBDB1 3623428 YP_308107.1 CDS rdhA NC_007356.1 885869 887467 D reductive dehalogenase 885869..887467 Dehalococcoides sp. CBDB1 3623213 YP_308108.1 CDS rdhB NC_007356.1 887469 887765 D reductive dehalogenase anchoring protein 887469..887765 Dehalococcoides sp. CBDB1 3623484 YP_308109.1 CDS cbdb_A1095 NC_007356.1 887822 888124 D hypothetical protein 887822..888124 Dehalococcoides sp. CBDB1 3622873 YP_308110.1 CDS cbdb_B24 NC_007356.1 888127 888597 D hypothetical protein 888127..888597 Dehalococcoides sp. CBDB1 3622964 YP_308111.1 CDS cbdb_B25 NC_007356.1 888688 888927 D hypothetical protein 888688..888927 Dehalococcoides sp. CBDB1 3622965 YP_308112.1 CDS rdhF NC_007356.1 888911 889675 D hypothetical protein 888911..889675 Dehalococcoides sp. CBDB1 3623116 YP_308113.1 CDS cbdb_A1098 NC_007356.1 889834 890481 R BioY family protein complement(889834..890481) Dehalococcoides sp. CBDB1 3622874 YP_308114.1 CDS cbdb_A1099 NC_007356.1 890534 890770 R hypothetical protein complement(890534..890770) Dehalococcoides sp. CBDB1 3622875 YP_308115.1 CDS cbdb_A1100 NC_007356.1 890914 891165 D hypothetical protein 890914..891165 Dehalococcoides sp. CBDB1 3622876 YP_308116.1 CDS ribH NC_007356.1 891162 891629 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(891162..891629) Dehalococcoides sp. CBDB1 3623378 YP_308117.1 CDS ribA NC_007356.1 891658 892869 R 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(891658..892869) Dehalococcoides sp. CBDB1 3623413 YP_308118.1 CDS ribE NC_007356.1 892902 893519 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(892902..893519) Dehalococcoides sp. CBDB1 3623415 YP_308119.1 CDS ribD NC_007356.1 893522 894619 R riboflavin biosynthesis protein RibD complement(893522..894619) Dehalococcoides sp. CBDB1 3623414 YP_308120.1 CDS cbdb_A1106 NC_007356.1 894765 895529 R hypothetical protein complement(894765..895529) Dehalococcoides sp. CBDB1 3622877 YP_308121.1 CDS lepB NC_007356.1 895633 896211 D signal peptidase I 895633..896211 Dehalococcoides sp. CBDB1 3623999 YP_308122.1 CDS pyrE NC_007356.1 896214 896777 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 896214..896777 Dehalococcoides sp. CBDB1 3623675 YP_308123.1 CDS cbdb_A1109 NC_007356.1 896806 897333 D hypothetical protein 896806..897333 Dehalococcoides sp. CBDB1 3622878 YP_308124.1 CDS mutL NC_007356.1 897330 899030 R DNA mismatch repair protein, MutL complement(897330..899030) Dehalococcoides sp. CBDB1 3623761 YP_308125.1 CDS pcrA NC_007356.1 899129 901345 R ATP-dependent DNA helicase PcrA complement(899129..901345) Dehalococcoides sp. CBDB1 3623298 YP_308126.1 CDS pyrR NC_007356.1 901613 902161 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 901613..902161 Dehalococcoides sp. CBDB1 3623209 YP_308127.1 CDS pyrB NC_007356.1 902164 903159 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 902164..903159 Dehalococcoides sp. CBDB1 3623672 YP_308128.1 CDS pyrC NC_007356.1 903162 904448 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 903162..904448 Dehalococcoides sp. CBDB1 3623673 YP_308129.1 CDS carA NC_007356.1 904484 905578 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 904484..905578 Dehalococcoides sp. CBDB1 3622769 YP_308130.1 CDS carB NC_007356.1 905604 908873 D carbamoyl-phosphate synthase large subunit 905604..908873 Dehalococcoides sp. CBDB1 3622770 YP_308131.1 CDS pyrK NC_007356.1 908883 909668 D dihydroorotate dehydrogenase, electron transfersubunit 908883..909668 Dehalococcoides sp. CBDB1 3623679 YP_308132.1 CDS folE NC_007356.1 909750 910319 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(909750..910319) Dehalococcoides sp. CBDB1 3622836 YP_308133.1 CDS thrC NC_007356.1 910354 911400 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(910354..911400) Dehalococcoides sp. CBDB1 3623354 YP_308134.1 CDS metM NC_007356.1 911409 912710 R homoserine dehydrogenase complement(911409..912710) Dehalococcoides sp. CBDB1 3623750 YP_308135.1 CDS cbdb_A1124 NC_007356.1 912728 913996 R protein export protein complement(912728..913996) Dehalococcoides sp. CBDB1 3622880 YP_308136.1 CDS cbdb_A1125 NC_007356.1 914300 915385 D nucleotidyl transferase 914300..915385 Dehalococcoides sp. CBDB1 3622881 YP_308137.1 CDS acs NC_007356.1 915410 917368 D acetyl-CoA synthetase 915410..917368 Dehalococcoides sp. CBDB1 3623258 YP_308138.1 CDS prfA NC_007356.1 917487 918554 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 917487..918554 Dehalococcoides sp. CBDB1 3623728 YP_308139.1 CDS cbdb_A1128 NC_007356.1 918554 919387 D SAM-dependent methyltransferase HemK family protein 918554..919387 Dehalococcoides sp. CBDB1 3622882 YP_308140.1 CDS fusA NC_007356.1 919473 921533 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(919473..921533) Dehalococcoides sp. CBDB1 3622846 YP_308141.1 CDS cbdb_A1131 NC_007356.1 921604 922161 R hypothetical protein complement(921604..922161) Dehalococcoides sp. CBDB1 3622884 YP_308142.1 CDS cbdb_A1132 NC_007356.1 922278 922544 R hypothetical protein complement(922278..922544) Dehalococcoides sp. CBDB1 3622885 YP_308143.1 CDS xerD NC_007356.1 922578 923486 R tyrosine recombinase XerD complement(922578..923486) Dehalococcoides sp. CBDB1 3623979 YP_308144.1 CDS uvrC NC_007356.1 923652 925475 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 923652..925475 Dehalococcoides sp. CBDB1 3623826 YP_308145.1 CDS cbdb_A1135 NC_007356.1 925553 926044 D acetyltransferase 925553..926044 Dehalococcoides sp. CBDB1 3622886 YP_308146.1 CDS cbdb_A1136 NC_007356.1 926056 926871 R HAD family hydrolase complement(926056..926871) Dehalococcoides sp. CBDB1 3623343 YP_308147.1 CDS mutS NC_007356.1 927033 929609 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 927033..929609 Dehalococcoides sp. CBDB1 3623763 YP_308148.1 CDS cbdb_A1138 NC_007356.1 929606 929824 R hypothetical protein complement(929606..929824) Dehalococcoides sp. CBDB1 3623299 YP_308149.1 CDS cbdb_A1139 NC_007356.1 930071 930433 D hypothetical protein 930071..930433 Dehalococcoides sp. CBDB1 3623301 YP_308150.1 CDS cbdb_A1140 NC_007356.1 930493 931254 R fumarylacetoacetate hydrolase complement(930493..931254) Dehalococcoides sp. CBDB1 3624108 YP_308151.1 CDS cobA NC_007356.1 931418 931963 D cob(I)alamin adenosyltransferase 931418..931963 Dehalococcoides sp. CBDB1 3623659 YP_308152.1 CDS cbdb_A1142 NC_007356.1 931984 933081 D hypothetical protein 931984..933081 Dehalococcoides sp. CBDB1 3623617 YP_308153.1 CDS cbdb_A1143 NC_007356.1 933085 933684 D non-canonical purine NTP pyrophosphatase, RdgB 933085..933684 Dehalococcoides sp. CBDB1 3623618 YP_308154.1 CDS dnaN NC_007356.1 933858 934994 D DNA polymerase III subunit beta 933858..934994 Dehalococcoides sp. CBDB1 3623183 YP_308155.1 CDS cbdb_A1146 NC_007356.1 934969 935151 R hypothetical protein complement(934969..935151) Dehalococcoides sp. CBDB1 3623619 YP_308156.1 CDS cbdb_A1147 NC_007356.1 935852 936268 D hypothetical protein 935852..936268 Dehalococcoides sp. CBDB1 3623620 YP_308157.1 CDS cbdb_A1148 NC_007356.1 936543 936671 R hypothetical protein complement(936543..936671) Dehalococcoides sp. CBDB1 3623621 YP_308158.1 CDS cbdb_A1149 NC_007356.1 937074 937934 R hypothetical protein complement(937074..937934) Dehalococcoides sp. CBDB1 3623622 YP_308159.1 CDS cbdb_A1150 NC_007356.1 938041 939003 D hypothetical protein 938041..939003 Dehalococcoides sp. CBDB1 3623623 YP_308160.1 CDS cbdb_A1151 NC_007356.1 939137 939499 D hypothetical protein 939137..939499 Dehalococcoides sp. CBDB1 3623624 YP_308161.1 CDS cbdb_A1152 NC_007356.1 939474 940442 D hydrolase 939474..940442 Dehalococcoides sp. CBDB1 3623625 YP_308162.1 CDS cbdb_A1154 NC_007356.1 940450 940569 D hypothetical protein 940450..940569 Dehalococcoides sp. CBDB1 3623626 YP_308163.1 CDS cbdb_A1156 NC_007356.1 940576 940830 D hypothetical protein 940576..940830 Dehalococcoides sp. CBDB1 3623344 YP_308164.1 CDS purU NC_007356.1 940996 941850 D formyltetrahydrofolate deformylase 940996..941850 Dehalococcoides sp. CBDB1 3623671 YP_308165.1 CDS ppiB NC_007356.1 942096 942722 D peptidyl-prolyl isomerase 942096..942722 Dehalococcoides sp. CBDB1 3623725 YP_308166.1 CDS cbdb_A1160 NC_007356.1 942978 944042 D arsenical-resistance protein 942978..944042 Dehalococcoides sp. CBDB1 3623346 YP_308167.1 CDS msrA NC_007356.1 944074 944598 R peptide methionine sulfoxide reductase complement(944074..944598) Dehalococcoides sp. CBDB1 3623758 YP_308168.1 CDS msrB NC_007356.1 944595 944969 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; a fusion protein of this enzyme with MsrA and thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase B complement(944595..944969) Dehalococcoides sp. CBDB1 3623759 YP_308169.1 CDS cbdb_A1164 NC_007356.1 945104 945676 R iron-sulfur flavoprotein complement(945104..945676) Dehalococcoides sp. CBDB1 3623347 YP_308170.1 CDS cbdb_A1165 NC_007356.1 945895 946230 R TfoX domain-containing protein complement(945895..946230) Dehalococcoides sp. CBDB1 3623348 YP_308171.1 CDS cbdb_A1167 NC_007356.1 946252 946719 R hypothetical protein complement(946252..946719) Dehalococcoides sp. CBDB1 3623349 YP_308172.1 CDS cbdb_A1168 NC_007356.1 947004 947303 D ArsR family transcriptional regulator 947004..947303 Dehalococcoides sp. CBDB1 3623350 YP_308173.1 CDS cbdb_A1169 NC_007356.1 947303 947968 D hypothetical protein 947303..947968 Dehalococcoides sp. CBDB1 3623593 YP_308174.1 CDS cbdb_A1171 NC_007356.1 948111 948305 D hypothetical protein 948111..948305 Dehalococcoides sp. CBDB1 3624109 YP_308175.1 CDS cbdb_A1172 NC_007356.1 948318 948878 R NADPH-dependent FMN reductase complement(948318..948878) Dehalococcoides sp. CBDB1 3624110 YP_308176.1 CDS cbdb_A1174 NC_007356.1 948980 949228 D hypothetical protein 948980..949228 Dehalococcoides sp. CBDB1 3624111 YP_308177.1 CDS cbdb_A1176 NC_007356.1 949385 949585 D hypothetical protein 949385..949585 Dehalococcoides sp. CBDB1 3624112 YP_308178.1 CDS pilT NC_007356.1 949810 950886 D twitching mobility protein 949810..950886 Dehalococcoides sp. CBDB1 3623971 YP_308179.1 CDS argJ NC_007356.1 950977 952194 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 950977..952194 Dehalococcoides sp. CBDB1 3623274 YP_308180.1 CDS argB NC_007356.1 952201 953019 D acetylglutamate kinase 952201..953019 Dehalococcoides sp. CBDB1 3623268 YP_308181.1 CDS argD NC_007356.1 953092 954288 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 953092..954288 Dehalococcoides sp. CBDB1 3623270 YP_308182.1 CDS cbdb_A1182 NC_007356.1 954295 955185 D hypothetical protein 954295..955185 Dehalococcoides sp. CBDB1 3624114 YP_308183.1 CDS argG NC_007356.1 955248 956468 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 955248..956468 Dehalococcoides sp. CBDB1 3623272 YP_308184.1 CDS argH NC_007356.1 956469 957854 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 956469..957854 Dehalococcoides sp. CBDB1 3623273 YP_308185.1 CDS rpmB NC_007356.1 957864 958052 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(957864..958052) Dehalococcoides sp. CBDB1 3623371 YP_308186.1 CDS cbdb_A1187 NC_007356.1 958181 959815 D DAK2 domain-containing protein 958181..959815 Dehalococcoides sp. CBDB1 3624115 YP_308187.1 CDS cbdb_A1190 NC_007356.1 959825 960664 D degV family protein 959825..960664 Dehalococcoides sp. CBDB1 3624116 YP_308188.1 CDS cbdb_A1191 NC_007356.1 960681 961523 D degV family protein 960681..961523 Dehalococcoides sp. CBDB1 3624117 YP_308189.1 CDS cbdb_A1192 NC_007356.1 961560 962393 D degV family protein 961560..962393 Dehalococcoides sp. CBDB1 3624118 YP_308190.1 CDS cbdb_A1193 NC_007356.1 962423 963355 D degV family protein 962423..963355 Dehalococcoides sp. CBDB1 3624119 YP_308191.1 CDS recG NC_007356.1 963716 965938 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 963716..965938 Dehalococcoides sp. CBDB1 3623404 YP_308192.1 CDS cbdb_A1195 NC_007356.1 965953 967227 D deoxyguanosinetriphosphate triphosphohydrolase 965953..967227 Dehalococcoides sp. CBDB1 3624120 YP_308193.1 CDS argS NC_007356.1 967305 968975 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 967305..968975 Dehalococcoides sp. CBDB1 3623275 YP_308194.1 CDS cbdb_A1198 NC_007356.1 969068 969298 R hypothetical protein complement(969068..969298) Dehalococcoides sp. CBDB1 3624121 YP_308195.1 CDS fabI NC_007356.1 969459 970298 D enoyl-ACP reductase 969459..970298 Dehalococcoides sp. CBDB1 3623286 YP_308196.1 CDS cbdb_A1201 NC_007356.1 970329 970532 D hypothetical protein 970329..970532 Dehalococcoides sp. CBDB1 3624123 YP_308197.1 CDS cbdb_A1202 NC_007356.1 970608 971051 D hypothetical protein 970608..971051 Dehalococcoides sp. CBDB1 3624124 YP_308198.1 CDS rpmF NC_007356.1 971056 971274 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 971056..971274 Dehalococcoides sp. CBDB1 3623375 YP_308199.1 CDS fabD NC_007356.1 971300 972232 D malonyl CoA-ACP transacylase 971300..972232 Dehalococcoides sp. CBDB1 3623283 YP_308200.1 CDS fabG NC_007356.1 972241 972984 D 3-oxoacyl-ACP reductase 972241..972984 Dehalococcoides sp. CBDB1 3623285 YP_308201.1 CDS nusB NC_007356.1 972996 973427 D N utilization substance protein B 972996..973427 Dehalococcoides sp. CBDB1 3623694 YP_308202.1 CDS acpP NC_007356.1 973432 973692 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 973432..973692 Dehalococcoides sp. CBDB1 3623092 YP_308203.1 CDS cbdb_A1210 NC_007356.1 973958 975469 R radical SAM domain-containing protein complement(973958..975469) Dehalococcoides sp. CBDB1 3624126 YP_308204.1 CDS mfd NC_007356.1 975541 978987 R transcription-repair coupling factor complement(975541..978987) Dehalococcoides sp. CBDB1 3623751 YP_308205.1 CDS proB NC_007356.1 979137 980258 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 979137..980258 Dehalococcoides sp. CBDB1 3623732 YP_308206.1 CDS cbdb_A1213 NC_007356.1 980271 980537 D hypothetical protein 980271..980537 Dehalococcoides sp. CBDB1 3624127 YP_308207.1 CDS cbdb_A1215 NC_007356.1 980534 980860 D hypothetical protein 980534..980860 Dehalococcoides sp. CBDB1 3624128 YP_308208.1 CDS cbdb_A1217 NC_007356.1 980900 982084 R serine protease DegP complement(980900..982084) Dehalococcoides sp. CBDB1 3624129 YP_308209.1 CDS cbdb_A1220 NC_007356.1 982174 983016 R serine protease DegP complement(982174..983016) Dehalococcoides sp. CBDB1 3624131 YP_308210.1 CDS cbdb_A1223 NC_007356.1 983208 983960 R MerR family transcriptional regulator complement(983208..983960) Dehalococcoides sp. CBDB1 3624132 YP_308211.1 CDS proA NC_007356.1 984082 985356 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 984082..985356 Dehalococcoides sp. CBDB1 3623731 YP_308212.1 CDS rph NC_007356.1 985438 986163 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(985438..986163) Dehalococcoides sp. CBDB1 3623385 YP_308213.1 CDS cbdb_A1227 NC_007356.1 986244 986654 R NUDIX domain-containing protein complement(986244..986654) Dehalococcoides sp. CBDB1 3624133 YP_308214.1 CDS cbdb_A1229 NC_007356.1 986647 987156 R competence-damage inducible protein CinA complement(986647..987156) Dehalococcoides sp. CBDB1 3624134 YP_308215.1 CDS cbdb_A1230 NC_007356.1 987186 987479 D hypothetical protein 987186..987479 Dehalococcoides sp. CBDB1 3623352 YP_308216.1 CDS cbdb_A1232 NC_007356.1 987427 988611 R sensor histidine kinase complement(987427..988611) Dehalococcoides sp. CBDB1 3624010 YP_308217.1 CDS cbdb_A1233 NC_007356.1 988611 989339 R hypothetical protein complement(988611..989339) Dehalococcoides sp. CBDB1 3624011 YP_308218.1 CDS cbdb_A1234 NC_007356.1 989488 990030 R DNA-binding response regulator complement(989488..990030) Dehalococcoides sp. CBDB1 3624012 YP_308219.1 CDS cbdb_A1235 NC_007356.1 990406 991515 D hypothetical protein 990406..991515 Dehalococcoides sp. CBDB1 3624013 YP_308220.1 CDS cbdb_B26 NC_007356.1 991611 991931 R hypothetical protein complement(991611..991931) Dehalococcoides sp. CBDB1 3622966 YP_308221.1 CDS typA NC_007356.1 992294 994123 D GTP-binding protein TypA 992294..994123 Dehalococcoides sp. CBDB1 3623821 YP_308222.1 CDS cbdb_A1238 NC_007356.1 994341 995747 R major facilitator family transporter complement(994341..995747) Dehalococcoides sp. CBDB1 3624014 YP_308223.1 CDS cbdb_A1239 NC_007356.1 995815 996141 R universal stress protein complement(995815..996141) Dehalococcoides sp. CBDB1 3624015 YP_308224.1 CDS cbdb_A1240 NC_007356.1 996763 997410 R hypothetical protein complement(996763..997410) Dehalococcoides sp. CBDB1 3624017 YP_308225.1 CDS cbdb_A1241 NC_007356.1 997571 997975 R fasciclin domain-containing protein complement(997571..997975) Dehalococcoides sp. CBDB1 3624018 YP_308226.1 CDS cbdb_A1244 NC_007356.1 998206 998769 D hypothetical protein 998206..998769 Dehalococcoides sp. CBDB1 3624019 YP_308227.1 CDS cbdb_A1245 NC_007356.1 998835 999182 R hypothetical protein complement(998835..999182) Dehalococcoides sp. CBDB1 3624020 YP_308228.1 CDS cbdb_A1246 NC_007356.1 999378 999566 D hypothetical protein 999378..999566 Dehalococcoides sp. CBDB1 3624021 YP_308229.1 CDS cbdb_A1247 NC_007356.1 999888 1000076 D hypothetical protein 999888..1000076 Dehalococcoides sp. CBDB1 3624022 YP_308230.1 CDS cbdb_A1248 NC_007356.1 1000170 1000997 R hydrolase complement(1000170..1000997) Dehalococcoides sp. CBDB1 3624023 YP_308231.1 CDS cbdb_A1249 NC_007356.1 1000987 1002360 R recombination factor protein RarA complement(1000987..1002360) Dehalococcoides sp. CBDB1 3624043 YP_308232.1 CDS cbdb_A1251 NC_007356.1 1002332 1002880 R hypothetical protein complement(1002332..1002880) Dehalococcoides sp. CBDB1 3624044 YP_308233.1 CDS cbdb_A1252 NC_007356.1 1002894 1003169 R hypothetical protein complement(1002894..1003169) Dehalococcoides sp. CBDB1 3624045 YP_308234.1 CDS cbdb_A1253 NC_007356.1 1003290 1004447 R hypothetical protein complement(1003290..1004447) Dehalococcoides sp. CBDB1 3624046 YP_308235.1 CDS cbdb_A1254 NC_007356.1 1004606 1005643 R radical SAM domain-containing protein complement(1004606..1005643) Dehalococcoides sp. CBDB1 3624047 YP_308236.1 CDS cbdb_A1255 NC_007356.1 1005717 1006625 R hypothetical protein complement(1005717..1006625) Dehalococcoides sp. CBDB1 3624048 YP_308237.1 CDS cbdb_B27 NC_007356.1 1006985 1007209 D hypothetical protein 1006985..1007209 Dehalococcoides sp. CBDB1 3622967 YP_308238.1 CDS cbdb_A1256 NC_007356.1 1007301 1007792 R nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein complement(1007301..1007792) Dehalococcoides sp. CBDB1 3624049 YP_308239.1 CDS cbdb_A1257 NC_007356.1 1007952 1008407 D hypothetical protein 1007952..1008407 Dehalococcoides sp. CBDB1 3624050 YP_308240.1 CDS cbdb_A1259 NC_007356.1 1008437 1009006 D hypothetical protein 1008437..1009006 Dehalococcoides sp. CBDB1 3624051 YP_308241.1 CDS cbdb_A1260 NC_007356.1 1009459 1010190 R hypothetical protein complement(1009459..1010190) Dehalococcoides sp. CBDB1 3624053 YP_308242.1 CDS cbdb_A1263 NC_007356.1 1010337 1010885 D iron-sulfur flavoprotein 1010337..1010885 Dehalococcoides sp. CBDB1 3624054 YP_308243.1 CDS cbdb_A1264 NC_007356.1 1010876 1011679 R acetyltransferase complement(1010876..1011679) Dehalococcoides sp. CBDB1 3624055 YP_308244.1 CDS cbdb_A1265 NC_007356.1 1011803 1011946 R hypothetical protein complement(1011803..1011946) Dehalococcoides sp. CBDB1 3624056 YP_308245.1 CDS cbdb_A1266 NC_007356.1 1011968 1012189 R hypothetical protein complement(1011968..1012189) Dehalococcoides sp. CBDB1 3624057 YP_308246.1 CDS coaE NC_007356.1 1012441 1013037 D dephospho-CoA kinase 1012441..1013037 Dehalococcoides sp. CBDB1 3623657 YP_308247.1 CDS cbdb_A1269 NC_007356.1 1013012 1013920 R hypothetical protein complement(1013012..1013920) Dehalococcoides sp. CBDB1 3624058 YP_308248.1 CDS rplU NC_007356.1 1014151 1014549 D 50S ribosomal protein L21 1014151..1014549 Dehalococcoides sp. CBDB1 3623366 YP_308249.1 CDS rpmA NC_007356.1 1014539 1014793 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1014539..1014793 Dehalococcoides sp. CBDB1 3623370 YP_308250.1 CDS rpmE NC_007356.1 1014800 1015006 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1014800..1015006 Dehalococcoides sp. CBDB1 3623374 YP_308251.1 CDS cbdb_A1275 NC_007356.1 1015086 1016009 D hypothetical protein 1015086..1016009 Dehalococcoides sp. CBDB1 3623309 YP_308252.1 CDS hisI NC_007356.1 1016002 1016316 R phosphoribosyl-AMP cyclohydrolase complement(1016002..1016316) Dehalococcoides sp. CBDB1 3623899 YP_308253.1 CDS cbdb_A1277 NC_007356.1 1016447 1016905 D acetyltransferase 1016447..1016905 Dehalococcoides sp. CBDB1 3623612 YP_308254.1 CDS hisA NC_007356.1 1016912 1017646 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(1016912..1017646) Dehalococcoides sp. CBDB1 3623616 YP_308255.1 CDS cbdb_A1279 NC_007356.1 1017652 1017894 R hypothetical protein complement(1017652..1017894) Dehalococcoides sp. CBDB1 3623329 YP_308256.1 CDS cbdb_A1281 NC_007356.1 1017974 1018354 R hypothetical protein complement(1017974..1018354) Dehalococcoides sp. CBDB1 3623330 YP_308257.1 CDS gatC NC_007356.1 1018463 1018750 D glutamyl-tRNA(Gln) amidotransferase subunit C 1018463..1018750 Dehalococcoides sp. CBDB1 3622851 YP_308258.1 CDS gatA NC_007356.1 1018750 1020210 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1018750..1020210 Dehalococcoides sp. CBDB1 3622849 YP_308259.1 CDS cbdb_A1285 NC_007356.1 1020227 1020691 D hypothetical protein 1020227..1020691 Dehalococcoides sp. CBDB1 3623331 YP_308260.1 CDS cbdb_A1287 NC_007356.1 1020815 1021189 D hypothetical protein 1020815..1021189 Dehalococcoides sp. CBDB1 3623332 YP_308261.1 CDS cbdb_A1288 NC_007356.1 1021195 1021404 D DNA-binding protein 1021195..1021404 Dehalococcoides sp. CBDB1 3623905 YP_308262.1 CDS cbdb_A1289 NC_007356.1 1021401 1022321 D ABC transporter ATP-binding protein 1021401..1022321 Dehalococcoides sp. CBDB1 3622978 YP_308263.1 CDS cbdb_A1290 NC_007356.1 1022321 1023016 D ABC transporter permease 1022321..1023016 Dehalococcoides sp. CBDB1 3622979 YP_308264.1 CDS cbdb_A1291 NC_007356.1 1023154 1023636 D AsnC family transcriptional regulator 1023154..1023636 Dehalococcoides sp. CBDB1 3622980 YP_308265.1 CDS aspC NC_007356.1 1023659 1024855 D aspartate aminotransferase 1023659..1024855 Dehalococcoides sp. CBDB1 3622652 YP_308266.1 CDS trpS NC_007356.1 1024935 1025906 R tryptophanyl-tRNA synthetase complement(1024935..1025906) Dehalococcoides sp. CBDB1 3623814 YP_308267.1 CDS ispH NC_007356.1 1025961 1026815 R hydroxymethylbutenyl pyrophosphate reductase complement(1025961..1026815) Dehalococcoides sp. CBDB1 3623994 YP_308268.1 CDS cbdb_A1295 NC_007356.1 1026901 1027911 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase 1026901..1027911 Dehalococcoides sp. CBDB1 3622981 YP_308269.1 CDS cbdb_A1296 NC_007356.1 1027908 1028840 D carbohydrate kinase 1027908..1028840 Dehalococcoides sp. CBDB1 3622982 YP_308270.1 CDS cbdb_A1297 NC_007356.1 1028844 1029701 R hypothetical protein complement(1028844..1029701) Dehalococcoides sp. CBDB1 3622983 YP_308271.1 CDS cbdb_A1298 NC_007356.1 1029707 1030246 R ECF subfamily RNA polymerase sigma factor complement(1029707..1030246) Dehalococcoides sp. CBDB1 3622984 YP_308272.1 CDS cbdb_A1299 NC_007356.1 1030296 1030457 R hypothetical protein complement(1030296..1030457) Dehalococcoides sp. CBDB1 3622985 YP_308273.1 CDS cbdb_A1300 NC_007356.1 1030613 1030837 D excisionase 1030613..1030837 Dehalococcoides sp. CBDB1 3622987 YP_308274.1 CDS cbdb_A1301 NC_007356.1 1030853 1031530 D LuxR family transcriptional regulator 1030853..1031530 Dehalococcoides sp. CBDB1 3622988 YP_308275.1 CDS gspE NC_007356.1 1031635 1033971 D type II secretion system protein GspE 1031635..1033971 Dehalococcoides sp. CBDB1 3622764 YP_308276.1 CDS pilC NC_007356.1 1033981 1035186 D pilin biogenesis protein 1033981..1035186 Dehalococcoides sp. CBDB1 3623970 YP_308277.1 CDS cbdb_A1304 NC_007356.1 1035199 1035654 D type II secretion system protein, GspI 1035199..1035654 Dehalococcoides sp. CBDB1 3622989 YP_308278.1 CDS cbdb_A1305 NC_007356.1 1035651 1036205 D type II secretion system protein 1035651..1036205 Dehalococcoides sp. CBDB1 3622990 YP_308279.1 CDS cbdb_A1306 NC_007356.1 1036236 1037363 D hypothetical protein 1036236..1037363 Dehalococcoides sp. CBDB1 3622991 YP_308280.1 CDS cbdb_A1307 NC_007356.1 1037478 1039085 D hypothetical protein 1037478..1039085 Dehalococcoides sp. CBDB1 3622992 YP_308281.1 CDS cbdb_A1308 NC_007356.1 1039095 1039670 D hypothetical protein 1039095..1039670 Dehalococcoides sp. CBDB1 3623013 YP_308282.1 CDS cbdb_A1309 NC_007356.1 1039676 1041160 D type IV pilus assembly family protein 1039676..1041160 Dehalococcoides sp. CBDB1 3623014 YP_308283.1 CDS pilT NC_007356.1 1041172 1042287 D twitching mobility protein 1041172..1042287 Dehalococcoides sp. CBDB1 3623972 YP_308284.1 CDS cbdb_A1311 NC_007356.1 1042426 1042785 R general secretion family protein complement(1042426..1042785) Dehalococcoides sp. CBDB1 3623016 YP_308285.1 CDS cbdb_A1313 NC_007356.1 1043010 1043777 D type IV prepilin leader peptidase 1043010..1043777 Dehalococcoides sp. CBDB1 3623017 YP_308286.1 CDS cbdb_A1314 NC_007356.1 1043902 1045986 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; functions in mannosylglycerate biosynthesis; bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase 1043902..1045986 Dehalococcoides sp. CBDB1 3623018 YP_308287.1 CDS cbdb_A1315 NC_007356.1 1046172 1046672 D hypothetical protein 1046172..1046672 Dehalococcoides sp. CBDB1 3623019 YP_308288.1 CDS gltX NC_007356.1 1046733 1048196 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1046733..1048196 Dehalococcoides sp. CBDB1 3623605 YP_308289.1 CDS cbdb_A1317 NC_007356.1 1048371 1048970 D hypothetical protein 1048371..1048970 Dehalococcoides sp. CBDB1 3623020 YP_308290.1 CDS cbdb_A1318 NC_007356.1 1049070 1049327 D hypothetical protein 1049070..1049327 Dehalococcoides sp. CBDB1 3623021 YP_308291.1 CDS cbdb_A1319 NC_007356.1 1049329 1050333 D radical SAM domain-containing protein 1049329..1050333 Dehalococcoides sp. CBDB1 3623022 YP_308292.1 CDS cbdb_A1320 NC_007356.1 1050352 1050501 R hypothetical protein complement(1050352..1050501) Dehalococcoides sp. CBDB1 3623023 YP_308293.1 CDS cbdb_A1322 NC_007356.1 1050621 1051121 D hypothetical protein 1050621..1051121 Dehalococcoides sp. CBDB1 3623024 YP_308294.1 CDS cbdb_A1323 NC_007356.1 1051118 1051690 D NADPH-dependent FMN reductase 1051118..1051690 Dehalococcoides sp. CBDB1 3623025 YP_308295.1 CDS pyrD NC_007356.1 1051692 1052624 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(1051692..1052624) Dehalococcoides sp. CBDB1 3623674 YP_308296.1 CDS cbdb_A1326 NC_007356.1 1052962 1053333 D dnaK suppressor protein 1052962..1053333 Dehalococcoides sp. CBDB1 3623026 YP_308297.1 CDS lspA NC_007356.1 1053360 1053842 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1053360..1053842 Dehalococcoides sp. CBDB1 3624008 YP_308298.1 CDS cbdb_A1328 NC_007356.1 1053829 1054731 D ribosomal large subunit pseudouridine synthase D 1053829..1054731 Dehalococcoides sp. CBDB1 3623027 YP_308299.1 CDS cbdb_A1330 NC_007356.1 1054831 1055112 D hypothetical protein 1054831..1055112 Dehalococcoides sp. CBDB1 3623029 YP_308300.1 CDS cbdb_A1331 NC_007356.1 1055140 1055550 D hypothetical protein 1055140..1055550 Dehalococcoides sp. CBDB1 3623030 YP_308301.1 CDS cbdb_A1332 NC_007356.1 1055691 1056281 D hypothetical protein 1055691..1056281 Dehalococcoides sp. CBDB1 3623031 YP_308302.1 CDS cbdb_A1333 NC_007356.1 1056278 1057909 D auxin-responsive GH3 protein 1056278..1057909 Dehalococcoides sp. CBDB1 3623032 YP_308303.1 CDS cbdb_B28 NC_007356.1 1058042 1058221 R hypothetical protein complement(1058042..1058221) Dehalococcoides sp. CBDB1 3622968 YP_308304.1 CDS cbdb_A1335 NC_007356.1 1058229 1060607 D diguanylate cyclase 1058229..1060607 Dehalococcoides sp. CBDB1 3623033 YP_308305.1 CDS nadC NC_007356.1 1060650 1061510 R nicotinate-nucleotide pyrophosphorylase complement(1060650..1061510) Dehalococcoides sp. CBDB1 3623766 YP_308306.1 CDS nabD NC_007356.1 1061512 1063059 R L-aspartate oxidase complement(1061512..1063059) Dehalococcoides sp. CBDB1 3623764 YP_308307.1 CDS yajC NC_007356.1 1063081 1063359 R preprotein translocase subunit YajC complement(1063081..1063359) Dehalococcoides sp. CBDB1 3623980 YP_308308.1 CDS miaB NC_007356.1 1063370 1064626 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1063370..1064626) Dehalococcoides sp. CBDB1 3623754 YP_308309.1 CDS cbdb_A1341 NC_007356.1 1064723 1065073 R hypothetical protein complement(1064723..1065073) Dehalococcoides sp. CBDB1 3623035 YP_308310.1 CDS mscL NC_007356.1 1065323 1065787 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 1065323..1065787 Dehalococcoides sp. CBDB1 3623757 YP_308311.1 CDS mutM NC_007356.1 1066005 1066817 R formamidopyrimidine-DNA glycosylase complement(1066005..1066817) Dehalococcoides sp. CBDB1 3623762 YP_308312.1 CDS cbdb_A1346 NC_007356.1 1066810 1067433 R PAP2 family protein complement(1066810..1067433) Dehalococcoides sp. CBDB1 3623036 YP_308313.1 CDS polA NC_007356.1 1067442 1070153 R DNA-directed DNA polymerase I complement(1067442..1070153) Dehalococcoides sp. CBDB1 3623978 YP_308314.1 CDS cbdb_A1349 NC_007356.1 1070316 1070762 R rhodanese-like domain-containing protein complement(1070316..1070762) Dehalococcoides sp. CBDB1 3623037 YP_308315.1 CDS cbdb_A1350 NC_007356.1 1070766 1071344 R hypothetical protein complement(1070766..1071344) Dehalococcoides sp. CBDB1 3623038 YP_308316.1 CDS cbdb_A1351 NC_007356.1 1071397 1071600 R hypothetical protein complement(1071397..1071600) Dehalococcoides sp. CBDB1 3623039 YP_308317.1 CDS cbdb_A1352 NC_007356.1 1071688 1071807 D hypothetical protein 1071688..1071807 Dehalococcoides sp. CBDB1 3623040 YP_308318.1 CDS argF NC_007356.1 1071868 1072803 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1071868..1072803 Dehalococcoides sp. CBDB1 3623271 YP_308319.1 CDS engA NC_007356.1 1072824 1074152 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1072824..1074152 Dehalococcoides sp. CBDB1 3623281 YP_308320.1 CDS cbdb_A1355 NC_007356.1 1074146 1074796 D hypothetical protein 1074146..1074796 Dehalococcoides sp. CBDB1 3623041 YP_308321.1 CDS gpsA NC_007356.1 1074845 1075924 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1074845..1075924 Dehalococcoides sp. CBDB1 3623610 YP_308322.1 CDS dnaJ NC_007356.1 1075928 1077007 R co-chaperone protein DnaJ complement(1075928..1077007) Dehalococcoides sp. CBDB1 3623181 YP_308323.1 CDS dnaK NC_007356.1 1077159 1079069 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1077159..1079069) Dehalococcoides sp. CBDB1 3623182 YP_308324.1 CDS grpE NC_007356.1 1079104 1079667 R co-chaperone protein GrpE complement(1079104..1079667) Dehalococcoides sp. CBDB1 3622763 YP_308325.1 CDS cbdb_A1361 NC_007356.1 1079717 1080754 R heat-inducible transcription repressor HrcA complement(1079717..1080754) Dehalococcoides sp. CBDB1 3623043 YP_308326.1 CDS cbdb_A1363 NC_007356.1 1080920 1081552 D hypothetical protein 1080920..1081552 Dehalococcoides sp. CBDB1 3623044 YP_308327.1 CDS cbdb_A1365 NC_007356.1 1081592 1083124 D hypothetical protein 1081592..1083124 Dehalococcoides sp. CBDB1 3623045 YP_308328.1 CDS cbdb_A1366 NC_007356.1 1083169 1083666 D hypothetical protein 1083169..1083666 Dehalococcoides sp. CBDB1 3623046 YP_308329.1 CDS cbdb_B29 NC_007356.1 1083707 1083844 R hypothetical protein complement(1083707..1083844) Dehalococcoides sp. CBDB1 3622969 YP_308330.1 CDS cbdb_A1368 NC_007356.1 1084174 1087221 R hypothetical protein complement(1084174..1087221) Dehalococcoides sp. CBDB1 3623047 YP_308331.1 CDS rho NC_007356.1 1087496 1088770 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(1087496..1088770) Dehalococcoides sp. CBDB1 3623412 YP_308332.1 CDS tal NC_007356.1 1088857 1089507 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase complement(1088857..1089507) Dehalococcoides sp. CBDB1 3622859 YP_308333.1 CDS pyrG NC_007356.1 1089546 1091180 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1089546..1091180) Dehalococcoides sp. CBDB1 3623677 YP_308334.1 CDS cbdb_A1372 NC_007356.1 1091464 1092456 D DnaJ family protein 1091464..1092456 Dehalococcoides sp. CBDB1 3623049 YP_308335.1 CDS cbdb_A1373 NC_007356.1 1092469 1092774 D MerR family transcriptional regulator 1092469..1092774 Dehalococcoides sp. CBDB1 3623050 YP_308336.1 CDS clpA NC_007356.1 1092779 1095217 D ATP-dependent Clp protease, ATP-binding subunit ClpC 1092779..1095217 Dehalococcoides sp. CBDB1 3623652 YP_308337.1 CDS cbdb_A1375 NC_007356.1 1095340 1095891 D hypothetical protein 1095340..1095891 Dehalococcoides sp. CBDB1 3623051 YP_308338.1 CDS purF NC_007356.1 1095977 1097395 D amidophosphoribosyltransferase 1095977..1097395 Dehalococcoides sp. CBDB1 3623666 YP_308339.1 CDS purM NC_007356.1 1097511 1098533 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1097511..1098533 Dehalococcoides sp. CBDB1 3623669 YP_308340.1 CDS cbdb_A1379 NC_007356.1 1098530 1099150 D SAM-dependent methyltransferase 1098530..1099150 Dehalococcoides sp. CBDB1 3623740 YP_308341.1 CDS purH NC_007356.1 1099179 1100720 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1099179..1100720 Dehalococcoides sp. CBDB1 3623667 YP_308342.1 CDS pncB NC_007356.1 1100738 1101739 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1100738..1101739 Dehalococcoides sp. CBDB1 3623976 YP_308343.1 CDS cbdb_A1383 NC_007356.1 1101923 1102171 D hypothetical protein 1101923..1102171 Dehalococcoides sp. CBDB1 3623133 YP_308344.1 CDS arsM NC_007356.1 1102175 1103011 D in Rhodopseudomonas palustris this protein confers resistance to arsenite; catalyzes the formation of a number of methylated intermediates from arsenite and SAM producing trimethylarsine; arsenite S-adenosylmethyltransferase 1102175..1103011 Dehalococcoides sp. CBDB1 3623134 YP_308345.1 CDS cbdb_A1385 NC_007356.1 1103008 1104423 R PP-loop family protein complement(1103008..1104423) Dehalococcoides sp. CBDB1 3623135 YP_308346.1 CDS cbdb_A1386 NC_007356.1 1104481 1105104 R phosphoglycerate mutase complement(1104481..1105104) Dehalococcoides sp. CBDB1 3623136 YP_308347.1 CDS cbdb_A1387 NC_007356.1 1105107 1106285 R M48 family peptidase complement(1105107..1106285) Dehalococcoides sp. CBDB1 3623137 YP_308348.1 CDS cbdb_A1388 NC_007356.1 1106285 1106929 R hypothetical protein complement(1106285..1106929) Dehalococcoides sp. CBDB1 3623138 YP_308349.1 CDS cbdb_A1389 NC_007356.1 1106910 1108184 R hemolysin-like protein complement(1106910..1108184) Dehalococcoides sp. CBDB1 3623139 YP_308350.1 CDS gcp NC_007356.1 1108302 1109282 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 1108302..1109282 Dehalococcoides sp. CBDB1 3623597 YP_308351.1 CDS groES NC_007356.1 1109775 1110071 D molecular chaperone GroES 1109775..1110071 Dehalococcoides sp. CBDB1 3623551 YP_308352.1 CDS groEL NC_007356.1 1110099 1111712 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 1110099..1111712 Dehalococcoides sp. CBDB1 3623550 YP_308353.1 CDS cbdb_A1394 NC_007356.1 1111800 1113059 R M16 family peptidase complement(1111800..1113059) Dehalococcoides sp. CBDB1 3623140 YP_308354.1 CDS hypA NC_007356.1 1113172 1113531 D hydrogenase nickel incorporation protein HypA 1113172..1113531 Dehalococcoides sp. CBDB1 3623334 YP_308355.1 CDS hypB NC_007356.1 1113512 1114165 D hydrogenase nickel incorporation protein HypB 1113512..1114165 Dehalococcoides sp. CBDB1 3624135 YP_308356.1 CDS hypF NC_007356.1 1114166 1116457 D [NiFe] hydrogenase maturation protein HypF 1114166..1116457 Dehalococcoides sp. CBDB1 3623542 YP_308357.1 CDS hypC NC_007356.1 1116457 1116672 D hydrogenase assembly chaperone HypC 1116457..1116672 Dehalococcoides sp. CBDB1 3623539 YP_308358.1 CDS hypD NC_007356.1 1116676 1117770 D hydrogenase expression/formation protein HypD 1116676..1117770 Dehalococcoides sp. CBDB1 3623540 YP_308359.1 CDS hypE NC_007356.1 1117763 1118770 D hydrogenase expression/formation protein HypE 1117763..1118770 Dehalococcoides sp. CBDB1 3623541 YP_308360.1 CDS cbdb_A1404 NC_007356.1 1118933 1119553 D TetR family transcriptional regulator 1118933..1119553 Dehalococcoides sp. CBDB1 3623141 YP_308361.1 CDS cbdb_A1405 NC_007356.1 1119563 1119886 D hypothetical protein 1119563..1119886 Dehalococcoides sp. CBDB1 3623142 YP_308362.1 CDS cbdb_A1406 NC_007356.1 1120703 1120837 D hypothetical protein 1120703..1120837 Dehalococcoides sp. CBDB1 3623143 YP_308363.1 CDS cbdb_A1409 NC_007356.1 1121452 1121742 R hypothetical protein complement(1121452..1121742) Dehalococcoides sp. CBDB1 3623144 YP_308364.1 CDS cbdb_A1410 NC_007356.1 1121726 1121959 D hypothetical protein 1121726..1121959 Dehalococcoides sp. CBDB1 3623145 YP_308365.1 CDS cbdb_A1412 NC_007356.1 1122011 1122424 R excisionase complement(1122011..1122424) Dehalococcoides sp. CBDB1 3623146 YP_308366.1 CDS cbdb_A1413 NC_007356.1 1122428 1122760 D hypothetical protein 1122428..1122760 Dehalococcoides sp. CBDB1 3623147 YP_308367.1 CDS cbdb_A1414 NC_007356.1 1122824 1123435 R multiple antibiotic resistance protein MarC complement(1122824..1123435) Dehalococcoides sp. CBDB1 3623148 YP_308368.1 CDS cbdb_A1416 NC_007356.1 1123550 1123996 D hypothetical protein 1123550..1123996 Dehalococcoides sp. CBDB1 3623149 YP_308369.1 CDS cbdb_A1417 NC_007356.1 1124001 1124978 R hypothetical protein complement(1124001..1124978) Dehalococcoides sp. CBDB1 3622993 YP_308370.1 CDS cbdb_A1418 NC_007356.1 1125167 1125568 D hypothetical protein 1125167..1125568 Dehalococcoides sp. CBDB1 3622994 YP_308371.1 CDS ctc NC_007356.1 1125743 1126399 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1125743..1126399 Dehalococcoides sp. CBDB1 3623165 YP_308372.1 CDS cbdb_A1420 NC_007356.1 1126413 1127264 D hypothetical protein 1126413..1127264 Dehalococcoides sp. CBDB1 3622996 YP_308373.1 CDS cbdb_A1421 NC_007356.1 1127257 1127838 D 2'-5' RNA ligase 1127257..1127838 Dehalococcoides sp. CBDB1 3622997 YP_308374.1 CDS cbdb_A1422 NC_007356.1 1127910 1128113 D hypothetical protein 1127910..1128113 Dehalococcoides sp. CBDB1 3622998 YP_308375.1 CDS cbdb_A1424 NC_007356.1 1128152 1128853 D comF family protein 1128152..1128853 Dehalococcoides sp. CBDB1 3622999 YP_308376.1 CDS cbdb_A1426 NC_007356.1 1128867 1129406 D ribosomal subunit interface protein 1128867..1129406 Dehalococcoides sp. CBDB1 3623000 YP_308377.1 CDS ogt NC_007356.1 1129482 1130045 D methylated-DNA--protein-cysteine methyltransferase 1129482..1130045 Dehalococcoides sp. CBDB1 3623698 YP_308378.1 CDS cbdb_A1430 NC_007356.1 1130023 1130406 R hypothetical protein complement(1130023..1130406) Dehalococcoides sp. CBDB1 3623002 YP_308379.1 CDS cbdb_A1432 NC_007356.1 1130429 1131247 R RadC family DNA repair protein complement(1130429..1131247) Dehalococcoides sp. CBDB1 3623003 YP_308380.1 CDS cbdb_A1433 NC_007356.1 1131231 1131479 R hypothetical protein complement(1131231..1131479) Dehalococcoides sp. CBDB1 3623004 YP_308381.1 CDS dnaE NC_007356.1 1131463 1134975 R DNA polymerase III subunit alpha complement(1131463..1134975) Dehalococcoides sp. CBDB1 3623179 YP_308382.1 CDS cbdb_A1437 NC_007356.1 1135122 1135832 D hypothetical protein 1135122..1135832 Dehalococcoides sp. CBDB1 3623005 YP_308383.1 CDS cbdb_A1438 NC_007356.1 1135923 1136339 R hypothetical protein complement(1135923..1136339) Dehalococcoides sp. CBDB1 3623006 YP_308384.1 CDS cbdb_A1439 NC_007356.1 1136321 1136443 R hypothetical protein complement(1136321..1136443) Dehalococcoides sp. CBDB1 3623007 YP_308385.1 CDS cbdb_A1440 NC_007356.1 1136688 1136903 R hypothetical protein complement(1136688..1136903) Dehalococcoides sp. CBDB1 3623008 YP_308386.1 CDS cbdb_B30 NC_007356.1 1137514 1137738 D hypothetical protein 1137514..1137738 Dehalococcoides sp. CBDB1 3622970 YP_308387.1 CDS trpE NC_007356.1 1138150 1139607 D anthranilate synthase component I 1138150..1139607 Dehalococcoides sp. CBDB1 3623811 YP_308388.1 CDS trpG NC_007356.1 1139591 1140181 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1139591..1140181 Dehalococcoides sp. CBDB1 3623813 YP_308389.1 CDS trpD NC_007356.1 1140186 1141211 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1140186..1141211 Dehalococcoides sp. CBDB1 3623809 YP_308390.1 CDS trpC NC_007356.1 1141216 1141995 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 1141216..1141995 Dehalococcoides sp. CBDB1 3623558 YP_308391.1 CDS trpF NC_007356.1 1141992 1142651 D N-(5'-phosphoribosyl)anthranilate isomerase 1141992..1142651 Dehalococcoides sp. CBDB1 3623812 YP_308392.1 CDS aroA NC_007356.1 1142645 1143667 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 1142645..1143667 Dehalococcoides sp. CBDB1 3623981 YP_308393.1 CDS trpB NC_007356.1 1143655 1144854 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1143655..1144854 Dehalococcoides sp. CBDB1 3623557 YP_308394.1 CDS trpA NC_007356.1 1144851 1145618 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1144851..1145618 Dehalococcoides sp. CBDB1 3623556 YP_308395.1 CDS rdhB NC_007356.1 1145731 1146015 R reductive dehalogenase anchoring protein complement(1145731..1146015) Dehalococcoides sp. CBDB1 3623485 YP_308396.1 CDS rdhA NC_007356.1 1146028 1147515 R reductive dehalogenase complement(1146028..1147515) Dehalococcoides sp. CBDB1 3623214 YP_308397.1 CDS rdhB NC_007356.1 1147950 1148222 R reductive dehalogenase anchoring protein complement(1147950..1148222) Dehalococcoides sp. CBDB1 3623486 YP_308398.1 CDS rdhA NC_007356.1 1148252 1149745 R reductive dehalogenase complement(1148252..1149745) Dehalococcoides sp. CBDB1 3623215 YP_308399.1 CDS rdhR NC_007356.1 1149998 1150588 D MarR family transcriptional regulator 1149998..1150588 Dehalococcoides sp. CBDB1 3623429 YP_308400.1 CDS thyX NC_007356.1 1150734 1151321 D thymidylate synthase 1150734..1151321 Dehalococcoides sp. CBDB1 3623357 YP_308401.1 CDS cbdb_A1458 NC_007356.1 1151355 1152290 R peptide ABC transporter ATP-binding protein complement(1151355..1152290) Dehalococcoides sp. CBDB1 3623010 YP_308402.1 CDS cbdb_A1459 NC_007356.1 1152284 1153252 R peptide ABC transporter ATP-binding protein complement(1152284..1153252) Dehalococcoides sp. CBDB1 3623011 YP_308403.1 CDS cbdb_A1461 NC_007356.1 1153249 1154088 R peptide ABC transporter permease complement(1153249..1154088) Dehalococcoides sp. CBDB1 3623012 YP_308404.1 CDS cbdb_A1462 NC_007356.1 1154090 1155064 R peptide ABC transporter permease complement(1154090..1155064) Dehalococcoides sp. CBDB1 3623888 YP_308405.1 CDS cbdb_A1463 NC_007356.1 1155124 1156755 R peptide ABC transporter substrate-binding protein complement(1155124..1156755) Dehalococcoides sp. CBDB1 3623889 YP_308406.1 CDS cbdb_A1465 NC_007356.1 1156760 1157581 R hypothetical protein complement(1156760..1157581) Dehalococcoides sp. CBDB1 3623890 YP_308407.1 CDS cbdb_A1466 NC_007356.1 1157870 1158316 D MarR family transcriptional regulator 1157870..1158316 Dehalococcoides sp. CBDB1 3623891 YP_308408.1 CDS cbdb_A1467 NC_007356.1 1158460 1158564 D hypothetical protein 1158460..1158564 Dehalococcoides sp. CBDB1 3623892 YP_308409.1 CDS cbdb_A1469 NC_007356.1 1158565 1158957 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1158565..1158957 Dehalococcoides sp. CBDB1 3623315 YP_308410.1 CDS cbdb_A1470 NC_007356.1 1159007 1159783 R hypothetical protein complement(1159007..1159783) Dehalococcoides sp. CBDB1 3623316 YP_308411.1 CDS cbdb_A1471 NC_007356.1 1159905 1160423 D hypothetical protein 1159905..1160423 Dehalococcoides sp. CBDB1 3623317 YP_308412.1 CDS cbdb_A1472 NC_007356.1 1160449 1160883 D flavodoxin 1160449..1160883 Dehalococcoides sp. CBDB1 3623318 YP_308413.1 CDS cbdb_A1474 NC_007356.1 1160994 1162391 R major facilitator family transporter complement(1160994..1162391) Dehalococcoides sp. CBDB1 3623319 YP_308414.1 CDS feoB NC_007356.1 1162443 1164173 R ferrous iron transport protein B complement(1162443..1164173) Dehalococcoides sp. CBDB1 3623293 YP_308415.1 CDS feoA NC_007356.1 1164170 1164415 R iron(II) transport protein A complement(1164170..1164415) Dehalococcoides sp. CBDB1 3623292 YP_308416.1 CDS cbdb_A1478 NC_007356.1 1164455 1164880 R FUR family transcriptional regulator complement(1164455..1164880) Dehalococcoides sp. CBDB1 3623320 YP_308417.1 CDS smpB NC_007356.1 1164955 1165473 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1164955..1165473 Dehalococcoides sp. CBDB1 3622852 YP_308418.1 CDS cbdb_A1480 NC_007356.1 1165760 1167427 R site-specific recombinase complement(1165760..1167427) Dehalococcoides sp. CBDB1 3623322 YP_308419.1 CDS cbdb_A1481 NC_007356.1 1167601 1168218 R DNA invertase/resolvase complement(1167601..1168218) Dehalococcoides sp. CBDB1 3623323 YP_308420.1 CDS cbdb_A1482 NC_007356.1 1168218 1168667 R hypothetical protein complement(1168218..1168667) Dehalococcoides sp. CBDB1 3623324 YP_308421.1 CDS cbdb_A1483 NC_007356.1 1168911 1169546 R hypothetical protein complement(1168911..1169546) Dehalococcoides sp. CBDB1 3623325 YP_308422.1 CDS cbdb_A1485 NC_007356.1 1170232 1172439 R hypothetical protein complement(1170232..1172439) Dehalococcoides sp. CBDB1 3623326 YP_308423.1 CDS cbdb_A1486 NC_007356.1 1172517 1173272 R hypothetical protein complement(1172517..1173272) Dehalococcoides sp. CBDB1 3623327 YP_308424.1 CDS cbdb_B31 NC_007356.1 1173656 1173934 D IS3 family transposase 1173656..1173934 Dehalococcoides sp. CBDB1 3622971 YP_308425.1 CDS cbdb_A1487 NC_007356.1 1173967 1174770 D transposase orfB 1173967..1174770 Dehalococcoides sp. CBDB1 3623328 YP_308426.1 CDS cbdb_A1488 NC_007356.1 1174814 1175929 D methyltransferase 1174814..1175929 Dehalococcoides sp. CBDB1 3623848 YP_308427.1 CDS cbdb_A1489 NC_007356.1 1175929 1176696 D hypothetical protein 1175929..1176696 Dehalococcoides sp. CBDB1 3623849 YP_308428.1 CDS rdhB NC_007356.1 1176883 1177155 R reductive dehalogenase anchoring protein complement(1176883..1177155) Dehalococcoides sp. CBDB1 3623700 YP_308429.1 CDS rdhA NC_007356.1 1177174 1178622 R reductive dehalogenase complement(1177174..1178622) Dehalococcoides sp. CBDB1 3623216 YP_308430.1 CDS rdhC NC_007356.1 1179150 1180466 D sensor histidine kinase 1179150..1180466 Dehalococcoides sp. CBDB1 3623838 YP_308431.1 CDS rdhD NC_007356.1 1180453 1181136 D DNA-binding response regulator 1180453..1181136 Dehalococcoides sp. CBDB1 3623873 YP_308432.1 CDS cbdb_A1494 NC_007356.1 1181628 1182164 R hypothetical protein complement(1181628..1182164) Dehalococcoides sp. CBDB1 3623850 YP_308433.1 CDS rdhG NC_007356.1 1182154 1182774 R hypothetical protein complement(1182154..1182774) Dehalococcoides sp. CBDB1 3623130 YP_308434.1 CDS rdhB NC_007356.1 1182844 1183119 R reductive dehalogenase anchoring protein complement(1182844..1183119) Dehalococcoides sp. CBDB1 3623833 YP_308435.1 CDS rdhA NC_007356.1 1183152 1184669 R reductive dehalogenase complement(1183152..1184669) Dehalococcoides sp. CBDB1 3623217 YP_308436.1 CDS rdhC NC_007356.1 1184972 1186270 D sensor histidine kinase 1184972..1186270 Dehalococcoides sp. CBDB1 3623839 YP_308437.1 CDS rdhD NC_007356.1 1186279 1186950 D DNA-binding response regulator 1186279..1186950 Dehalococcoides sp. CBDB1 3623874 YP_308438.1 CDS rdhF NC_007356.1 1187286 1188050 R hypothetical protein complement(1187286..1188050) Dehalococcoides sp. CBDB1 3623117 YP_308439.1 CDS cbdb_A1501 NC_007356.1 1188377 1188688 R hypothetical protein complement(1188377..1188688) Dehalococcoides sp. CBDB1 3623853 YP_308440.1 CDS cbdb_B34 NC_007356.1 1188744 1189172 R hypothetical protein complement(1188744..1189172) Dehalococcoides sp. CBDB1 3623532 YP_308441.1 CDS rdhB NC_007356.1 1189227 1189520 R reductive dehalogenase anchoring protein complement(1189227..1189520) Dehalococcoides sp. CBDB1 3623701 YP_308442.1 CDS rdhA NC_007356.1 1189522 1191102 R reductive dehalogenase complement(1189522..1191102) Dehalococcoides sp. CBDB1 3623218 YP_308443.1 CDS cbdb_A1504 NC_007356.1 1191222 1191335 R hypothetical protein complement(1191222..1191335) Dehalococcoides sp. CBDB1 3623854 YP_308444.1 CDS cbdb_A1505 NC_007356.1 1191934 1192389 R hypothetical protein complement(1191934..1192389) Dehalococcoides sp. CBDB1 3623855 YP_308445.1 CDS rdhG NC_007356.1 1192394 1192969 R hypothetical protein complement(1192394..1192969) Dehalococcoides sp. CBDB1 3623124 YP_308446.1 CDS rdhB NC_007356.1 1193044 1193313 R reductive dehalogenase anchoring protein complement(1193044..1193313) Dehalococcoides sp. CBDB1 3623702 YP_308447.1 CDS rdhA NC_007356.1 1193343 1194734 R reductive dehalogenase complement(1193343..1194734) Dehalococcoides sp. CBDB1 3623219 YP_308448.1 CDS rdhR NC_007356.1 1195021 1195560 D MarR family transcriptional regulator 1195021..1195560 Dehalococcoides sp. CBDB1 3623430 YP_308449.1 CDS cbdb_B35 NC_007356.1 1196186 1196395 R hypothetical protein complement(1196186..1196395) Dehalococcoides sp. CBDB1 3623533 YP_308450.1 CDS rdhD NC_007356.1 1196848 1197519 D DNA-binding response regulator 1196848..1197519 Dehalococcoides sp. CBDB1 3623875 YP_308451.1 CDS cbdb_A1512 NC_007356.1 1197506 1198918 D sensor histidine kinase 1197506..1198918 Dehalococcoides sp. CBDB1 3623857 YP_308452.1 CDS cbdb_A1513 NC_007356.1 1199927 1200145 D hypothetical protein 1199927..1200145 Dehalococcoides sp. CBDB1 3623858 YP_308453.1 CDS cbdb_A1514 NC_007356.1 1200212 1200379 R hypothetical protein complement(1200212..1200379) Dehalococcoides sp. CBDB1 3623859 YP_308454.1 CDS cbdb_A1516 NC_007356.1 1200421 1200657 R hypothetical protein complement(1200421..1200657) Dehalococcoides sp. CBDB1 3623860 YP_308455.1 CDS cbdb_A1517 NC_007356.1 1201240 1201389 R hypothetical protein complement(1201240..1201389) Dehalococcoides sp. CBDB1 3623861 YP_308456.1 CDS cas1 NC_007356.1 1203162 1204091 R CRISPR-associated Cas1 family protein complement(1203162..1204091) Dehalococcoides sp. CBDB1 3622771 YP_308457.1 CDS cbdb_A1519 NC_007356.1 1204091 1204720 R CRISPR-associated protein complement(1204091..1204720) Dehalococcoides sp. CBDB1 3623862 YP_308458.1 CDS cbdb_B36 NC_007356.1 1204745 1205362 R hypothetical protein complement(1204745..1205362) Dehalococcoides sp. CBDB1 3623534 YP_308459.1 CDS cbdb_A1520 NC_007356.1 1205359 1206642 R hypothetical protein complement(1205359..1206642) Dehalococcoides sp. CBDB1 3623863 YP_308460.1 CDS cbdb_B37 NC_007356.1 1206635 1207168 R hypothetical protein complement(1206635..1207168) Dehalococcoides sp. CBDB1 3623076 YP_308461.1 CDS cbdb_A1521 NC_007356.1 1207158 1208789 R hypothetical protein complement(1207158..1208789) Dehalococcoides sp. CBDB1 3623864 YP_308462.1 CDS cas3 NC_007356.1 1208782 1211475 R CRISPR-associated helicase Cas3 family protein complement(1208782..1211475) Dehalococcoides sp. CBDB1 3622772 YP_308463.1 CDS cbdb_A1523 NC_007356.1 1211697 1212497 R hypothetical protein complement(1211697..1212497) Dehalococcoides sp. CBDB1 3623865 YP_308464.1 CDS cbdb_A1524 NC_007356.1 1212940 1213278 R hypothetical protein complement(1212940..1213278) Dehalococcoides sp. CBDB1 3623866 YP_308465.1 CDS cbdb_B38 NC_007356.1 1213400 1213894 R hypothetical protein complement(1213400..1213894) Dehalococcoides sp. CBDB1 3623077 YP_308466.1 CDS cbdb_A1527 NC_007356.1 1214057 1215535 R hypothetical protein complement(1214057..1215535) Dehalococcoides sp. CBDB1 3623867 YP_308467.1 CDS cbdb_A1529 NC_007356.1 1215673 1216779 R hypothetical protein complement(1215673..1216779) Dehalococcoides sp. CBDB1 3623507 YP_308468.1 CDS cbdb_A1530 NC_007356.1 1216776 1218071 R ATPase AAA complement(1216776..1218071) Dehalococcoides sp. CBDB1 3623509 YP_308469.1 CDS cbdb_A1531 NC_007356.1 1218246 1218716 D hypothetical protein 1218246..1218716 Dehalococcoides sp. CBDB1 3623510 YP_308470.1 CDS cbdb_A1532 NC_007356.1 1218773 1219822 D transcriptional regulator 1218773..1219822 Dehalococcoides sp. CBDB1 3623511 YP_308471.1 CDS cbdb_A1533 NC_007356.1 1220195 1220806 D hypothetical protein 1220195..1220806 Dehalococcoides sp. CBDB1 3623512 YP_308472.1 CDS cbdb_B39 NC_007356.1 1220781 1221218 D hypothetical protein 1220781..1221218 Dehalococcoides sp. CBDB1 3623078 YP_308473.1 CDS rdhR NC_007356.1 1221553 1222041 D MarR family transcriptional regulator 1221553..1222041 Dehalococcoides sp. CBDB1 3623431 YP_308474.1 CDS rdhA NC_007356.1 1222599 1224086 D reductive dehalogenase 1222599..1224086 Dehalococcoides sp. CBDB1 3623220 YP_308475.1 CDS rdhB NC_007356.1 1224114 1224383 D reductive dehalogenase anchoring protein 1224114..1224383 Dehalococcoides sp. CBDB1 3623703 YP_308476.1 CDS rdhG NC_007356.1 1224519 1225085 D hypothetical protein 1224519..1225085 Dehalococcoides sp. CBDB1 3623125 YP_308477.1 CDS rdhH NC_007356.1 1225085 1225819 D hypothetical protein 1225085..1225819 Dehalococcoides sp. CBDB1 3623131 YP_308478.1 CDS rdhB NC_007356.1 1226129 1226410 R reductive dehalogenase anchoring protein complement(1226129..1226410) Dehalococcoides sp. CBDB1 3623835 YP_308479.1 CDS rdhA NC_007356.1 1226459 1227841 R reductive dehalogenase complement(1226459..1227841) Dehalococcoides sp. CBDB1 3623221 YP_308480.1 CDS cbdb_A1540 NC_007356.1 1227975 1228127 R reductive dehalogenase- N-terminal fragment complement(1227975..1228127) Dehalococcoides sp. CBDB1 3623514 YP_308481.1 CDS rdhB NC_007356.1 1228683 1228955 R reductive dehalogenase anchoring protein complement(1228683..1228955) Dehalococcoides sp. CBDB1 3623704 YP_308482.1 CDS rdhA NC_007356.1 1228967 1230430 R reductive dehalogenase complement(1228967..1230430) Dehalococcoides sp. CBDB1 3623222 YP_308483.1 CDS rdhC NC_007356.1 1230682 1232295 D sensor histidine kinase 1230682..1232295 Dehalococcoides sp. CBDB1 3623840 YP_308484.1 CDS rdhD NC_007356.1 1232301 1232987 D DNA-binding response regulator 1232301..1232987 Dehalococcoides sp. CBDB1 3623876 YP_308485.1 CDS rdhB NC_007356.1 1233375 1233662 R reductive dehalogenase anchoring protein complement(1233375..1233662) Dehalococcoides sp. CBDB1 3623705 YP_308486.1 CDS rdhA NC_007356.1 1233683 1235200 R reductive dehalogenase complement(1233683..1235200) Dehalococcoides sp. CBDB1 3623223 YP_308487.1 CDS rdhC NC_007356.1 1235417 1236586 D sensor histidine kinase 1235417..1236586 Dehalococcoides sp. CBDB1 3623841 YP_308488.1 CDS rdhD NC_007356.1 1236600 1237316 D LuxR family transcriptional regulator 1236600..1237316 Dehalococcoides sp. CBDB1 3623877 YP_308489.1 CDS rdhB NC_007356.1 1237596 1237865 R reductive dehalogenase anchoring protein complement(1237596..1237865) Dehalococcoides sp. CBDB1 3623706 YP_308490.1 CDS rdhA NC_007356.1 1237886 1239412 R reductive dehalogenase complement(1237886..1239412) Dehalococcoides sp. CBDB1 3623444 YP_308491.1 CDS rdhD NC_007356.1 1239510 1240151 R DNA-binding response regulator complement(1239510..1240151) Dehalococcoides sp. CBDB1 3623878 YP_308492.1 CDS rdhD NC_007356.1 1240329 1241021 R DNA-binding response regulator complement(1240329..1241021) Dehalococcoides sp. CBDB1 3623879 YP_308493.1 CDS rdhR NC_007356.1 1241686 1242198 D MarR family transcriptional regulator 1241686..1242198 Dehalococcoides sp. CBDB1 3623432 YP_308494.1 CDS rdhF NC_007356.1 1242331 1243011 R hypothetical protein complement(1242331..1243011) Dehalococcoides sp. CBDB1 3623118 YP_308495.1 CDS rdhI NC_007356.1 1243354 1244211 R radical SAM domain-containing protein complement(1243354..1244211) Dehalococcoides sp. CBDB1 3623421 YP_308496.1 CDS rdhI NC_007356.1 1244208 1244966 R radical SAM domain-containing protein complement(1244208..1244966) Dehalococcoides sp. CBDB1 3623422 YP_308497.1 CDS rdhG NC_007356.1 1244996 1245568 R hypothetical protein complement(1244996..1245568) Dehalococcoides sp. CBDB1 3623126 YP_308498.1 CDS rdhB NC_007356.1 1245686 1245958 R reductive dehalogenase anchoring protein complement(1245686..1245958) Dehalococcoides sp. CBDB1 3623707 YP_308499.1 CDS rdhA NC_007356.1 1245976 1247517 R reductive dehalogenase complement(1245976..1247517) Dehalococcoides sp. CBDB1 3623445 YP_308500.1 CDS cbdb_A1561 NC_007356.1 1247670 1247789 R hypothetical protein complement(1247670..1247789) Dehalococcoides sp. CBDB1 3623516 YP_308501.1 CDS rdhB NC_007356.1 1248269 1248556 R reductive dehalogenase anchoring protein complement(1248269..1248556) Dehalococcoides sp. CBDB1 3623708 YP_308502.1 CDS rdhA NC_007356.1 1248605 1250002 R reductive dehalogenase complement(1248605..1250002) Dehalococcoides sp. CBDB1 3623446 YP_308503.1 CDS rdhD NC_007356.1 1250136 1250828 R DNA-binding response regulator complement(1250136..1250828) Dehalococcoides sp. CBDB1 3623880 YP_308504.1 CDS rdhC NC_007356.1 1250829 1252574 R sensor histidine kinase complement(1250829..1252574) Dehalococcoides sp. CBDB1 3623842 YP_308505.1 CDS cbdb_A1566 NC_007356.1 1252550 1253173 R hypothetical protein complement(1252550..1253173) Dehalococcoides sp. CBDB1 3623517 YP_308506.1 CDS rdhD NC_007356.1 1253762 1254736 R regulatory protein complement(1253762..1254736) Dehalococcoides sp. CBDB1 3623881 YP_308507.1 CDS cbdb_B41 NC_007356.1 1255274 1255504 D hypothetical protein 1255274..1255504 Dehalococcoides sp. CBDB1 3623079 YP_308508.1 CDS glnA NC_007356.1 1255494 1256999 D glutamine synthetase 1255494..1256999 Dehalococcoides sp. CBDB1 3623602 YP_308509.1 CDS rdhB NC_007356.1 1257362 1257631 R reductive dehalogenase anchoring protein complement(1257362..1257631) Dehalococcoides sp. CBDB1 3623709 YP_308510.1 CDS rdhA NC_007356.1 1257652 1259175 R reductive dehalogenase complement(1257652..1259175) Dehalococcoides sp. CBDB1 3623447 YP_308511.1 CDS rdhR NC_007356.1 1259380 1259886 D MarR family transcriptional regulator 1259380..1259886 Dehalococcoides sp. CBDB1 3623433 YP_308512.1 CDS cbdb_B42 NC_007356.1 1259895 1260284 R IS1477 transposase, orfB (fragment) complement(1259895..1260284) Dehalococcoides sp. CBDB1 3623080 YP_308513.1 CDS cbdb_A1572 NC_007356.1 1260902 1262863 D hypothetical protein 1260902..1262863 Dehalococcoides sp. CBDB1 3623519 YP_308514.1 CDS rdhB NC_007356.1 1263219 1263506 R reductive dehalogenase anchoring protein complement(1263219..1263506) Dehalococcoides sp. CBDB1 3623710 YP_308515.1 CDS rdhA NC_007356.1 1263534 1265051 R reductive dehalogenase complement(1263534..1265051) Dehalococcoides sp. CBDB1 3623448 YP_308516.1 CDS rdhR NC_007356.1 1265283 1265759 D MarR family transcriptional regulator 1265283..1265759 Dehalococcoides sp. CBDB1 3623434 YP_308517.1 CDS rdhB NC_007356.1 1266163 1266450 R reductive dehalogenase anchoring protein complement(1266163..1266450) Dehalococcoides sp. CBDB1 3623711 YP_308518.1 CDS rdhA NC_007356.1 1266472 1267989 R reductive dehalogenase complement(1266472..1267989) Dehalococcoides sp. CBDB1 3623468 YP_308519.1 CDS rdhH NC_007356.1 1268179 1268916 R hypothetical protein complement(1268179..1268916) Dehalococcoides sp. CBDB1 3623416 YP_308520.1 CDS rdhG NC_007356.1 1268916 1269482 R hypothetical protein complement(1268916..1269482) Dehalococcoides sp. CBDB1 3623127 YP_308521.1 CDS rdhB NC_007356.1 1269618 1269887 R reductive dehalogenase anchoring protein complement(1269618..1269887) Dehalococcoides sp. CBDB1 3623712 YP_308522.1 CDS rdhA NC_007356.1 1269916 1271391 R reductive dehalogenase complement(1269916..1271391) Dehalococcoides sp. CBDB1 3623469 YP_308523.1 CDS rdhR NC_007356.1 1271952 1272473 R MarR family transcriptional regulator complement(1271952..1272473) Dehalococcoides sp. CBDB1 3623435 YP_308524.1 CDS cbdb_A1584 NC_007356.1 1272538 1272696 R hypothetical protein complement(1272538..1272696) Dehalococcoides sp. CBDB1 3623068 YP_308525.1 CDS cbdb_A1585 NC_007356.1 1272854 1273303 R hypothetical protein complement(1272854..1273303) Dehalococcoides sp. CBDB1 3623893 YP_308526.1 CDS rdhG NC_007356.1 1273308 1273883 R hypothetical protein complement(1273308..1273883) Dehalococcoides sp. CBDB1 3623128 YP_308527.1 CDS rdhB NC_007356.1 1273958 1274227 R reductive dehalogenase anchoring protein complement(1273958..1274227) Dehalococcoides sp. CBDB1 3623713 YP_308528.1 CDS rdhA NC_007356.1 1274257 1275744 R reductive dehalogenase complement(1274257..1275744) Dehalococcoides sp. CBDB1 3623470 YP_308529.1 CDS rdhD NC_007356.1 1276045 1276722 R DNA-binding response regulator complement(1276045..1276722) Dehalococcoides sp. CBDB1 3623882 YP_308530.1 CDS rdhC NC_007356.1 1276697 1278301 R sensor histidine kinase complement(1276697..1278301) Dehalococcoides sp. CBDB1 3623843 YP_308531.1 CDS cbdb_A1591 NC_007356.1 1278634 1281912 D sensor histidine kinase/response regulator 1278634..1281912 Dehalococcoides sp. CBDB1 3623895 YP_308532.1 CDS cbdb_A1593 NC_007356.1 1282026 1282424 R nitrogenase iron-molybdenum cofactor maturation domain-containing protein complement(1282026..1282424) Dehalococcoides sp. CBDB1 3623896 YP_308533.1 CDS rdhB NC_007356.1 1282704 1282973 R reductive dehalogenase anchoring protein complement(1282704..1282973) Dehalococcoides sp. CBDB1 3623714 YP_308534.1 CDS rdhA NC_007356.1 1283001 1284485 R reductive dehalogenase complement(1283001..1284485) Dehalococcoides sp. CBDB1 3623471 YP_308535.1 CDS rdhR NC_007356.1 1285082 1285597 D MarR family transcriptional regulator 1285082..1285597 Dehalococcoides sp. CBDB1 3623397 YP_308536.1 CDS rdhB NC_007356.1 1285663 1285935 R reductive dehalogenase anchoring protein complement(1285663..1285935) Dehalococcoides sp. CBDB1 3623715 YP_308537.1 CDS rdhA NC_007356.1 1285951 1287450 R reductive dehalogenase complement(1285951..1287450) Dehalococcoides sp. CBDB1 3623472 YP_308538.1 CDS cbdb_A1599 NC_007356.1 1287890 1288525 D hypothetical protein 1287890..1288525 Dehalococcoides sp. CBDB1 3623487 YP_308539.1 CDS rdhCD NC_007356.1 1289094 1293398 D sensor histidine kinase/response regulator 1289094..1293398 Dehalococcoides sp. CBDB1 3623871 YP_308540.1 CDS rdhD NC_007356.1 1293398 1294453 D response regulator 1293398..1294453 Dehalococcoides sp. CBDB1 3623883 YP_308541.1 CDS cbdb_A1604 NC_007356.1 1294567 1294968 R hypothetical protein complement(1294567..1294968) Dehalococcoides sp. CBDB1 3623488 YP_308542.1 CDS cbdb_A1605 NC_007356.1 1294987 1295529 R hypothetical protein complement(1294987..1295529) Dehalococcoides sp. CBDB1 3623489 YP_308543.1 CDS cbdb_A1606 NC_007356.1 1295676 1296131 R hypothetical protein complement(1295676..1296131) Dehalococcoides sp. CBDB1 3623490 YP_308544.1 CDS cbdb_A1607 NC_007356.1 1296147 1296743 R hypothetical protein complement(1296147..1296743) Dehalococcoides sp. CBDB1 3623491 YP_308545.1 CDS cbdb_A1608 NC_007356.1 1297148 1299706 D sensor histidine kinase/response regulator 1297148..1299706 Dehalococcoides sp. CBDB1 3623492 YP_308546.1 CDS cbdb_A1609 NC_007356.1 1299780 1300460 D hypothetical protein 1299780..1300460 Dehalococcoides sp. CBDB1 3623493 YP_308547.1 CDS cbdb_A1610 NC_007356.1 1300611 1301048 R hypothetical protein complement(1300611..1301048) Dehalococcoides sp. CBDB1 3623494 YP_308548.1 CDS cbdb_A1611 NC_007356.1 1301068 1301499 R MerR family transcriptional regulator complement(1301068..1301499) Dehalococcoides sp. CBDB1 3623495 YP_308549.1 CDS cbdb_A1612 NC_007356.1 1301618 1303570 D ABC-transporter ATPase/permease 1301618..1303570 Dehalococcoides sp. CBDB1 3623496 YP_308550.1 CDS cbdb_A1613 NC_007356.1 1303725 1305476 D hypothetical protein 1303725..1305476 Dehalococcoides sp. CBDB1 3623497 YP_308551.1 CDS cbdb_A1614 NC_007356.1 1305652 1308666 R integral membrane efflux protein complement(1305652..1308666) Dehalococcoides sp. CBDB1 3623498 YP_308552.1 CDS rdhR NC_007356.1 1308689 1309138 R MarR family transcriptional regulator complement(1308689..1309138) Dehalococcoides sp. CBDB1 3623398 YP_308553.1 CDS rdhB NC_007356.1 1309393 1309665 R reductive dehalogenase anchoring protein complement(1309393..1309665) Dehalococcoides sp. CBDB1 3623716 YP_308554.1 CDS rdhA NC_007356.1 1309684 1311111 R reductive dehalogenase complement(1309684..1311111) Dehalococcoides sp. CBDB1 3623473 YP_308555.1 CDS rdhR NC_007356.1 1311430 1311954 D MarR family transcriptional regulator 1311430..1311954 Dehalococcoides sp. CBDB1 3623399 YP_308556.1 CDS cbdb_A1620 NC_007356.1 1311996 1314128 R radical SAM protein complement(1311996..1314128) Dehalococcoides sp. CBDB1 3623500 YP_308557.1 CDS cbdb_A1621 NC_007356.1 1314289 1315950 R major facilitator family transporter complement(1314289..1315950) Dehalococcoides sp. CBDB1 3623501 YP_308558.1 CDS rdhR NC_007356.1 1315966 1316400 R MarR family transcriptional regulator complement(1315966..1316400) Dehalococcoides sp. CBDB1 3623400 YP_308559.1 CDS rdhB NC_007356.1 1316606 1316890 R reductive dehalogenase anchoring protein complement(1316606..1316890) Dehalococcoides sp. CBDB1 3623717 YP_308560.1 CDS rdhA NC_007356.1 1316903 1318390 R reductive dehalogenase complement(1316903..1318390) Dehalococcoides sp. CBDB1 3623474 YP_308561.1 CDS rdhR NC_007356.1 1318637 1319125 D MarR family transcriptional regulator 1318637..1319125 Dehalococcoides sp. CBDB1 3623401 YP_308562.1 CDS rdhB NC_007356.1 1319200 1319472 R reductive dehalogenase anchoring protein complement(1319200..1319472) Dehalococcoides sp. CBDB1 3623718 YP_308563.1 CDS rdhA NC_007356.1 1319491 1320969 R reductive dehalogenase complement(1319491..1320969) Dehalococcoides sp. CBDB1 3623475 YP_308564.1 CDS rdhC NC_007356.1 1321244 1322422 D sensor histidine kinase 1321244..1322422 Dehalococcoides sp. CBDB1 3623844 YP_308565.1 CDS rdhD NC_007356.1 1322419 1323096 D DNA-binding response regulator 1322419..1323096 Dehalococcoides sp. CBDB1 3623884 YP_308566.1 CDS cbdb_A1633 NC_007356.1 1323170 1323526 R hypothetical protein complement(1323170..1323526) Dehalococcoides sp. CBDB1 3623502 YP_308567.1 CDS cbdb_A1635 NC_007356.1 1323683 1324516 R hypothetical protein complement(1323683..1324516) Dehalococcoides sp. CBDB1 3623503 YP_308568.1 CDS rdhB NC_007356.1 1324794 1325066 R reductive dehalogenase anchoring protein complement(1324794..1325066) Dehalococcoides sp. CBDB1 3623719 YP_308569.1 CDS rdhA NC_007356.1 1325086 1326588 R reductive dehalogenase complement(1325086..1326588) Dehalococcoides sp. CBDB1 3623476 YP_308570.1 CDS pheA NC_007356.1 1326986 1327816 R prephenate dehydratase complement(1326986..1327816) Dehalococcoides sp. CBDB1 3623965 YP_308571.1 CDS cbdb_A1640 NC_007356.1 1328263 1329111 R hypothetical protein complement(1328263..1329111) Dehalococcoides sp. CBDB1 3623505 YP_308572.1 CDS secG NC_007356.1 1329124 1329342 R preprotein translocase subunit SecG complement(1329124..1329342) Dehalococcoides sp. CBDB1 3623785 YP_308573.1 CDS gatB NC_007356.1 1329345 1330823 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1329345..1330823) Dehalococcoides sp. CBDB1 3622850 YP_308574.1 CDS cbdb_A1644 NC_007356.1 1331127 1331831 D hypothetical protein 1331127..1331831 Dehalococcoides sp. CBDB1 3623506 YP_308575.1 CDS cbdb_A1646 NC_007356.1 1332008 1332172 R hypothetical protein complement(1332008..1332172) Dehalococcoides sp. CBDB1 3623449 YP_308576.1 CDS cbdb_B43 NC_007356.1 1332193 1332450 R (Fe-S)-binding protein complement(1332193..1332450) Dehalococcoides sp. CBDB1 3623081 YP_308577.1 CDS cbdb_A1647 NC_007356.1 1332468 1333145 R MerR family transcriptional regulator complement(1332468..1333145) Dehalococcoides sp. CBDB1 3623450 YP_308578.1 CDS cbdb_A1648 NC_007356.1 1333272 1334309 R hypothetical protein complement(1333272..1334309) Dehalococcoides sp. CBDB1 3623451 YP_308579.1 CDS cbdb_A1649 NC_007356.1 1334526 1334825 R hypothetical protein complement(1334526..1334825) Dehalococcoides sp. CBDB1 3623452 YP_308580.1 CDS cbdb_A1650 NC_007356.1 1334825 1335217 R hypothetical protein complement(1334825..1335217) Dehalococcoides sp. CBDB1 3623453 YP_308581.1 CDS cbdb_A1651 NC_007356.1 1335279 1335416 D hypothetical protein 1335279..1335416 Dehalococcoides sp. CBDB1 3623454 YP_308582.1 CDS hycG NC_007356.1 1335458 1335973 R hydrogenase 4 subunit HycG complement(1335458..1335973) Dehalococcoides sp. CBDB1 3622758 YP_308583.1 CDS hycE NC_007356.1 1335984 1337564 R hydrogenase 4 subunit HycE complement(1335984..1337564) Dehalococcoides sp. CBDB1 3622757 YP_308584.1 CDS cbdb_A1655 NC_007356.1 1337568 1338962 R Catalyzes the transfer of electrons from NADH to ubiquinone; hydrogenase membrane subunit complement(1337568..1338962) Dehalococcoides sp. CBDB1 3623455 YP_308585.1 CDS cbdb_A1656 NC_007356.1 1339049 1339729 R hydrogenase subunit complement(1339049..1339729) Dehalococcoides sp. CBDB1 3623456 YP_308586.1 CDS hycD NC_007356.1 1339733 1340674 R hydrogenase, HycD subunit complement(1339733..1340674) Dehalococcoides sp. CBDB1 3622756 YP_308587.1 CDS hycC NC_007356.1 1340671 1342605 R Catalyzes the transfer of electrons from NADH to ubiquinone; hydrogenase membrane subunit complement(1340671..1342605) Dehalococcoides sp. CBDB1 3622755 YP_308588.1 CDS mgsA NC_007356.1 1342883 1343314 D catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1342883..1343314 Dehalococcoides sp. CBDB1 3623457 YP_308589.1 CDS cbdb_A1662 NC_007356.1 1343502 1343711 D hypothetical protein 1343502..1343711 Dehalococcoides sp. CBDB1 3623458 YP_308590.1 CDS cbdb_A1663 NC_007356.1 1343819 1345195 R mechanosensitive ion channel MscS complement(1343819..1345195) Dehalococcoides sp. CBDB1 3623459 YP_308591.1 CDS cbdb_A1664 NC_007356.1 1345258 1345641 R TetR family transcriptional regulator complement(1345258..1345641) Dehalococcoides sp. CBDB1 3623460 YP_308592.1 CDS cbdb_A1665 NC_007356.1 1345710 1345847 R hypothetical protein complement(1345710..1345847) Dehalococcoides sp. CBDB1 3623461 YP_308593.1 CDS cbdb_A1667 NC_007356.1 1345945 1346934 R dihydroflavonol 4-reductase complement(1345945..1346934) Dehalococcoides sp. CBDB1 3623462 YP_308594.1 CDS cbdb_A1668 NC_007356.1 1346938 1347924 R hypothetical protein complement(1346938..1347924) Dehalococcoides sp. CBDB1 3623463 YP_308595.1 CDS cbdb_A1669 NC_007356.1 1348375 1349016 D antioxidant, AhpC 1348375..1349016 Dehalococcoides sp. CBDB1 3623464 YP_308596.1 CDS cbdb_A1670 NC_007356.1 1349026 1349247 D hypothetical protein 1349026..1349247 Dehalococcoides sp. CBDB1 3623465 YP_308597.1 CDS cbdb_A1671 NC_007356.1 1349582 1349839 D hypothetical protein 1349582..1349839 Dehalococcoides sp. CBDB1 3623466 YP_308598.1 CDS cbdb_A1673 NC_007356.1 1350039 1350422 D hypothetical protein 1350039..1350422 Dehalococcoides sp. CBDB1 3623467 YP_308599.1 CDS cbdb_A1675 NC_007356.1 1350464 1351030 D hypothetical protein 1350464..1351030 Dehalococcoides sp. CBDB1 3623189 YP_308600.1 CDS cbdb_A1677 NC_007356.1 1351048 1352241 D peptidase 1351048..1352241 Dehalococcoides sp. CBDB1 3623190 YP_308601.1 CDS cysE NC_007356.1 1352322 1353014 R serine O-acetyltransferase complement(1352322..1353014) Dehalococcoides sp. CBDB1 3623167 YP_308602.1 CDS cutA NC_007356.1 1353042 1353386 R divalent cation tolerance protein CutA complement(1353042..1353386) Dehalococcoides sp. CBDB1 3623166 YP_308603.1 CDS nadA NC_007356.1 1353392 1354300 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(1353392..1354300) Dehalococcoides sp. CBDB1 3623765 YP_308604.1 CDS cbdb_A1683 NC_007356.1 1354426 1355091 R SAM-dependent methyltransferase complement(1354426..1355091) Dehalococcoides sp. CBDB1 3623191 YP_308605.1 CDS cbdb_A1684 NC_007356.1 1355088 1356161 R AIR synthase domain-containing protein complement(1355088..1356161) Dehalococcoides sp. CBDB1 3623192 YP_308606.1 CDS cbdb_B44 NC_007356.1 1356154 1356267 R hypothetical protein complement(1356154..1356267) Dehalococcoides sp. CBDB1 3623082 YP_308607.1 CDS cbdb_A1685 NC_007356.1 1356390 1356836 R transcriptional regulator complement(1356390..1356836) Dehalococcoides sp. CBDB1 3623193 YP_308608.1 CDS cbdb_A1686 NC_007356.1 1357007 1358068 R hypothetical protein complement(1357007..1358068) Dehalococcoides sp. CBDB1 3623194 YP_308609.1 CDS cbdb_A1688 NC_007356.1 1358152 1359345 R membrane bound regulatory protein CprC complement(1358152..1359345) Dehalococcoides sp. CBDB1 3623195 YP_308610.1 CDS cbdb_A1689 NC_007356.1 1359537 1359659 R hypothetical protein complement(1359537..1359659) Dehalococcoides sp. CBDB1 3623196 YP_308611.1 CDS cbdb_A1690 NC_007356.1 1359623 1360822 R membrane bound regulatory protein CprC complement(1359623..1360822) Dehalococcoides sp. CBDB1 3623197 YP_308612.1 CDS tatC NC_007356.1 1360943 1361731 R Sec-independent protein translocase TatC complement(1360943..1361731) Dehalococcoides sp. CBDB1 3622863 YP_308613.1 CDS tatB NC_007356.1 1361728 1362018 R twin-arginine translocation protein TatB complement(1361728..1362018) Dehalococcoides sp. CBDB1 3622862 YP_308614.1 CDS tatA/E NC_007356.1 1362095 1362331 R twin-arginine translocation protein TatA complement(1362095..1362331) Dehalococcoides sp. CBDB1 3622860 YP_308615.1 CDS tatA/E NC_007356.1 1362423 1362620 R twin-arginine translocation protein TatA complement(1362423..1362620) Dehalococcoides sp. CBDB1 3622861 YP_308616.1 CDS folP NC_007356.1 1362868 1363716 D dihydropteroate synthase 1362868..1363716 Dehalococcoides sp. CBDB1 3622838 YP_308617.1 CDS folK NC_007356.1 1363707 1364237 D 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1363707..1364237 Dehalococcoides sp. CBDB1 3622837 YP_308618.1 CDS ptpS NC_007356.1 1364237 1364608 D 6-pyruvoyl tetrahydrobiopterin synthase 1364237..1364608 Dehalococcoides sp. CBDB1 3623739 YP_308619.1 CDS recA NC_007356.1 1364732 1365745 D recA protein 1364732..1365745 Dehalococcoides sp. CBDB1 3623403 YP_308620.1 CDS recX NC_007356.1 1365833 1366477 D regulatory protein RecX 1365833..1366477 Dehalococcoides sp. CBDB1 3623409 YP_308621.1 CDS cbdb_A1702 NC_007356.1 1366546 1368129 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1366546..1368129 Dehalococcoides sp. CBDB1 3623199 YP_308622.1 CDS cbdb_A1703 NC_007356.1 1368141 1368911 D hypothetical protein 1368141..1368911 Dehalococcoides sp. CBDB1 3623200 YP_308623.1 CDS cbdb_A1704 NC_007356.1 1368914 1369777 D phosphotransferase domain-containing protein 1368914..1369777 Dehalococcoides sp. CBDB1 3623201 YP_308624.1 CDS cbdb_A1705 NC_007356.1 1369774 1370472 D hypothetical protein 1369774..1370472 Dehalococcoides sp. CBDB1 3623202 YP_308625.1 CDS cbdb_A1706 NC_007356.1 1370499 1371170 R HhH-GPD family DNA repair protein complement(1370499..1371170) Dehalococcoides sp. CBDB1 3623203 YP_308626.1 CDS cbdb_A1707 NC_007356.1 1371152 1371595 R hypothetical protein complement(1371152..1371595) Dehalococcoides sp. CBDB1 3623204 YP_308627.1 CDS cbdb_A1708 NC_007356.1 1371649 1372896 R homocitrate synthase complement(1371649..1372896) Dehalococcoides sp. CBDB1 3623205 YP_308628.1 CDS cbdb_A1709 NC_007356.1 1373058 1373549 D HIT domain-containing protein 1373058..1373549 Dehalococcoides sp. CBDB1 3623206 YP_308629.1 CDS cbdb_A1710 NC_007356.1 1373696 1373968 D AbrB family transcriptional regulator 1373696..1373968 Dehalococcoides sp. CBDB1 3623207 YP_308630.1 CDS cbdb_A1711 NC_007356.1 1373965 1374279 D hypothetical protein 1373965..1374279 Dehalococcoides sp. CBDB1 3623208 YP_308631.1 CDS cbdb_A1713 NC_007356.1 1374298 1374489 D hypothetical protein 1374298..1374489 Dehalococcoides sp. CBDB1 3623052 YP_308632.1 CDS cbdb_A1715 NC_007356.1 1374493 1375434 D ABC transporter ATP-binding protein 1374493..1375434 Dehalococcoides sp. CBDB1 3623053 YP_308633.1 CDS cbdb_A1716 NC_007356.1 1375431 1376192 D ABC-transporter, permease component 1375431..1376192 Dehalococcoides sp. CBDB1 3623054 YP_308634.1 CDS cbdb_A1717 NC_007356.1 1376227 1377525 D hypothetical protein 1376227..1377525 Dehalococcoides sp. CBDB1 3623055 YP_308635.1 CDS cbdb_A1718 NC_007356.1 1377620 1378063 D hypothetical protein 1377620..1378063 Dehalococcoides sp. CBDB1 3623056 YP_308636.1 CDS cbdb_A1720 NC_007356.1 1378230 1378397 R desulforedoxin complement(1378230..1378397) Dehalococcoides sp. CBDB1 3623057 YP_308637.1 CDS cbdb_A1721 NC_007356.1 1378429 1378638 R hypothetical protein complement(1378429..1378638) Dehalococcoides sp. CBDB1 3623058 YP_308638.1 CDS argC NC_007356.1 1378885 1379910 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(1378885..1379910) Dehalococcoides sp. CBDB1 3623269 YP_308639.1 CDS cbdb_A1724 NC_007356.1 1379966 1381669 R sodium exchanger complement(1379966..1381669) Dehalococcoides sp. CBDB1 3623059 YP_308640.1 CDS cbdb_A1725 NC_007356.1 1381824 1382597 D metallo-beta-lactamase 1381824..1382597 Dehalococcoides sp. CBDB1 3623060 YP_308641.1 CDS cbdb_A1727 NC_007356.1 1382652 1384484 D radical SAM domain-containing protein 1382652..1384484 Dehalococcoides sp. CBDB1 3623061 YP_308642.1 CDS gyrA NC_007356.1 1384559 1386988 R DNA gyrase subunit A complement(1384559..1386988) Dehalococcoides sp. CBDB1 3623613 YP_308643.1 CDS cbdb_A1729 NC_007356.1 1386992 1387798 R hypothetical protein complement(1386992..1387798) Dehalococcoides sp. CBDB1 3623062 YP_308644.1 CDS cbdb_A1730 NC_007356.1 1388011 1388229 D nifU protein,-like protein 1388011..1388229 Dehalococcoides sp. CBDB1 3623063 YP_308645.1 CDS metL NC_007356.1 1388287 1389504 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(1388287..1389504) Dehalococcoides sp. CBDB1 3623749 YP_308646.1 CDS cbdb_A1733 NC_007356.1 1389619 1389822 R hypothetical protein complement(1389619..1389822) Dehalococcoides sp. CBDB1 3623064 YP_308647.1 CDS cbdb_A1734 NC_007356.1 1389846 1391027 R catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate; this enzyme does not require the cofactor 2,3-bisphosphoglycerate as a phosphate donor; BPG-independent PGAM; aPGAM; cofactor-independent phosphoglycerate mutase complement(1389846..1391027) Dehalococcoides sp. CBDB1 3623065 YP_308648.1 CDS cbdb_A1735 NC_007356.1 1391189 1391974 R nucleotide pyrophosphohydrolase complement(1391189..1391974) Dehalococcoides sp. CBDB1 3623066 YP_308649.1 CDS cbdb_A1737 NC_007356.1 1392094 1392792 R hypothetical protein complement(1392094..1392792) Dehalococcoides sp. CBDB1 3623069 YP_308650.1 CDS rpsT NC_007356.1 1392931 1393197 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1392931..1393197 Dehalococcoides sp. CBDB1 3623775 YP_308651.1 CDS lexA NC_007356.1 1393298 1393942 D LexA repressor 1393298..1393942 Dehalococcoides sp. CBDB1 3624005 YP_308652.1 CDS cbdb_A1741 NC_007356.1 1393954 1394535 D catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 1393954..1394535 Dehalococcoides sp. CBDB1 3624061 YP_308653.1 CDS fmt NC_007356.1 1394532 1395470 R methionyl-tRNA formyltransferase complement(1394532..1395470) Dehalococcoides sp. CBDB1 3622833 cbdb_t01 tRNA tRNA-Ala NC_007356.1 58025 58100 D tRNA-Ala 58025..58100 Dehalococcoides sp. CBDB1 3624033 cbdb_t02 tRNA tRNA-Val NC_007356.1 165392 165467 D tRNA-Val 165392..165467 Dehalococcoides sp. CBDB1 3623553 cbdb_t03 tRNA tRNA-Ala NC_007356.1 231199 231274 R tRNA-Ala complement(231199..231274) Dehalococcoides sp. CBDB1 3624035 cbdb_t04 tRNA tRNA-Thr NC_007356.1 284708 284782 D tRNA-Thr 284708..284782 Dehalococcoides sp. CBDB1 3623314 cbdb_t05 tRNA tRNA-Met NC_007356.1 316546 316620 R tRNA-Met complement(316546..316620) Dehalococcoides sp. CBDB1 3623531 cbdb_t06 tRNA tRNA-Ser NC_007356.1 447868 447957 R tRNA-Ser complement(447868..447957) Dehalococcoides sp. CBDB1 3623310 cbdb_t07 tRNA tRNA-Ser NC_007356.1 557033 557122 R tRNA-Ser complement(557033..557122) Dehalococcoides sp. CBDB1 3623311 cbdb_t08 tRNA tRNA-Ser NC_007356.1 557159 557248 R tRNA-Ser complement(557159..557248) Dehalococcoides sp. CBDB1 3623312 cbdb_t09 tRNA tRNA-Arg NC_007356.1 558994 559065 D tRNA-Arg 558994..559065 Dehalococcoides sp. CBDB1 3624036 cbdb_t10 tRNA tRNA-Pro NC_007356.1 565185 565262 D tRNA-Pro 565185..565262 Dehalococcoides sp. CBDB1 3623443 cbdb_t11 tRNA tRNA-Gly NC_007356.1 567710 567784 R tRNA-Gly complement(567710..567784) Dehalococcoides sp. CBDB1 3623590 cbdb_t12 tRNA tRNA-Met NC_007356.1 568336 568410 D tRNA-Met 568336..568410 Dehalococcoides sp. CBDB1 3623529 cbdb_t13 tRNA tRNA-Arg NC_007356.1 588635 588711 D tRNA-Arg 588635..588711 Dehalococcoides sp. CBDB1 3624037 cbdb_t14 tRNA tRNA-Leu NC_007356.1 598274 598358 R tRNA-Leu complement(598274..598358) Dehalococcoides sp. CBDB1 3623526 cbdb_t15 tRNA tRNA-Pro NC_007356.1 600806 600882 D tRNA-Pro 600806..600882 Dehalococcoides sp. CBDB1 3623336 cbdb_t16 tRNA tRNA-Phe NC_007356.1 640404 640479 D tRNA-Phe 640404..640479 Dehalococcoides sp. CBDB1 3623442 cbdb_t17 tRNA tRNA-Leu NC_007356.1 640554 640640 D tRNA-Leu 640554..640640 Dehalococcoides sp. CBDB1 3623522 cbdb_t18 tRNA tRNA-Gln NC_007356.1 640671 640744 D tRNA-Gln 640671..640744 Dehalococcoides sp. CBDB1 3622973 cbdb_t19 tRNA tRNA-Asn NC_007356.1 640755 640829 D tRNA-Asn 640755..640829 Dehalococcoides sp. CBDB1 3624041 cbdb_t20 tRNA tRNA-Lys NC_007356.1 647726 647798 R tRNA-Lys complement(647726..647798) Dehalococcoides sp. CBDB1 3623527 cbdb_t21 tRNA tRNA-Gly NC_007356.1 681729 681803 D tRNA-Gly 681729..681803 Dehalococcoides sp. CBDB1 3622977 cbdb_t22 tRNA tRNA-Lys NC_007356.1 703018 703093 R tRNA-Lys complement(703018..703093) Dehalococcoides sp. CBDB1 3623528 cbdb_t23 tRNA tRNA-Arg NC_007356.1 749457 749532 R tRNA-Arg complement(749457..749532) Dehalococcoides sp. CBDB1 3624040 cbdb_t24 tRNA tRNA-His NC_007356.1 749548 749623 R tRNA-His complement(749548..749623) Dehalococcoides sp. CBDB1 3623591 cbdb_t25 tRNA tRNA-Thr NC_007356.1 785270 785345 R tRNA-Thr complement(785270..785345) Dehalococcoides sp. CBDB1 3623338 cbdb_t26 tRNA tRNA-Tyr NC_007356.1 785408 785491 R tRNA-Tyr complement(785408..785491) Dehalococcoides sp. CBDB1 3623552 cbdb_t27 tRNA tRNA-Thr NC_007356.1 785532 785604 R tRNA-Thr complement(785532..785604) Dehalococcoides sp. CBDB1 3623339 cbdb_t28 tRNA tRNA-Ile NC_007356.1 803153 803229 R tRNA-Ile complement(803153..803229) Dehalococcoides sp. CBDB1 3623521 cbdb_t29 tRNA tRNA-Glu NC_007356.1 806417 806493 R tRNA-Glu complement(806417..806493) Dehalococcoides sp. CBDB1 3622975 cbdb_t30 tRNA tRNA-Gln NC_007356.1 806506 806579 R tRNA-Gln complement(806506..806579) Dehalococcoides sp. CBDB1 3622974 cbdb_t31 tRNA tRNA-Asp NC_007356.1 826263 826339 D tRNA-Asp 826263..826339 Dehalococcoides sp. CBDB1 3624042 cbdb_t32 tRNA tRNA-Val NC_007356.1 889710 889786 R tRNA-Val complement(889710..889786) Dehalococcoides sp. CBDB1 3623555 cbdb_t33 tRNA tRNA-Met NC_007356.1 1006848 1006922 D tRNA-Met 1006848..1006922 Dehalococcoides sp. CBDB1 3623530 cbdb_t34 tRNA tRNA-Ser NC_007356.1 1065835 1065926 R tRNA-Ser complement(1065835..1065926) Dehalococcoides sp. CBDB1 3623313 cbdb_t35 tRNA tRNA-Trp NC_007356.1 1119992 1120068 D tRNA-Trp 1119992..1120068 Dehalococcoides sp. CBDB1 3623300 cbdb_t36 tRNA tRNA-Leu NC_007356.1 1120074 1120160 D tRNA-Leu 1120074..1120160 Dehalococcoides sp. CBDB1 3623523 cbdb_t37 tRNA tRNA-Gly NC_007356.1 1120174 1120248 D tRNA-Gly 1120174..1120248 Dehalococcoides sp. CBDB1 3623589 cbdb_t38 tRNA tRNA-Cys NC_007356.1 1120286 1120360 D tRNA-Cys 1120286..1120360 Dehalococcoides sp. CBDB1 3622972 cbdb_t39 tRNA tRNA-Leu NC_007356.1 1121299 1121383 D tRNA-Leu 1121299..1121383 Dehalococcoides sp. CBDB1 3623524 cbdb_t40 tRNA tRNA-Leu NC_007356.1 1137162 1137248 D tRNA-Leu 1137162..1137248 Dehalococcoides sp. CBDB1 3623525 cbdb_t41 tRNA tRNA-Arg NC_007356.1 1137254 1137331 D tRNA-Arg 1137254..1137331 Dehalococcoides sp. CBDB1 3624038 cbdb_t42 tRNA tRNA-Val NC_007356.1 1137342 1137418 D tRNA-Val 1137342..1137418 Dehalococcoides sp. CBDB1 3623554 cbdb_t43 tRNA tRNA NC_007356.1 1170156 1170231 R tRNA-OTHER complement(1170156..1170231) Dehalococcoides sp. CBDB1 3624032 cbdb_t44 tRNA tRNA-Ala NC_007356.1 1330950 1331022 D tRNA-Ala 1330950..1331022 Dehalococcoides sp. CBDB1 3624034 cbdb_t45 tRNA tRNA-Arg NC_007356.1 1349381 1349456 D tRNA-Arg 1349381..1349456 Dehalococcoides sp. CBDB1 3624039 cbdb_t46 tRNA tRNA-Glu NC_007356.1 1378760 1378835 R tRNA-Glu complement(1378760..1378835) Dehalococcoides sp. CBDB1 3622976 cbdb_t47 tRNA tRNA-Pro NC_007356.1 1391100 1391177 D tRNA-Pro 1391100..1391177 Dehalococcoides sp. CBDB1 3623337 cbdb_r01 rRNA cbdb_r01 NC_007356.1 47731 50680 D 23S ribosomal RNA 47731..50680 Dehalococcoides sp. CBDB1 3623089 cbdb_r02 rRNA cbdb_r02 NC_007356.1 50780 50902 D 5S ribosomal RNA 50780..50902 Dehalococcoides sp. CBDB1 3623090 cbdb_r03 rRNA cbdb_r03 NC_007356.1 803576 805010 R 16S ribosomal RNA complement(803576..805010) Dehalococcoides sp. CBDB1 3623088