-- dump date   	20120504_143229
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003805974.1	COGs: COG0593 ATPase involved in DNA replication initiation; InterProIPR013317:IPR013159:IPR010921:IPR018312:IPR 003593:IPR001957:IPR020591; KEGG: sfu:Sfum_0001 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; ATPase AAA; SPTR: A0LE53 Chromosomal replication initiator protein dnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA
YP_003805975.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774:IPR001179:IPR008104; KEGG: pca:Pcar_0774 FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; SPTR: Q3A6H4 peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YP_003805976.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_3725 acyl-CoA synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FLQ8 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003805977.1	InterPro IPR013429; KEGG: sfu:Sfum_3203 hypothetical protein; PFAM: regulatory protein FmdB; SPTR: A0LN74 Putative uncharacterized protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM:  regulatory protein, FmdB family
YP_003805978.1	COGs: COG2927 DNA polymerase III chi subunit; InterPro IPR007459; KEGG: pca:Pcar_1548 DNA polymerase III, chi subunit; PFAM: DNA polymerase III chi subunit HolC; SPTR: Q3A4B4 DNA polymerase III, chi subunit; PFAM: DNA polymerase III chi subunit, HolC
YP_003805979.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR005467:IPR 009082:IPR004358; KEGG: dal:Dalk_2165 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: B8FF41 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003805980.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2166 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FF42 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003805981.1	COGs: COG2116 formate/nitrite family of transporter; InterPro IPR001789:IPR000292:IPR011006; KEGG: dal:Dalk_2167 response regulator receiver protein; PFAM: formate/nitrite transporter; response regulator receiver; SMART: response regulator receiver; SPTR: B8FF43 Response regulator receiver protein; PFAM: formate/nitrite transporter; Response regulator receiver domain; TIGRFAM: formate/nitrite transporter
YP_003805982.1	COGs: COG0506 proline dehydrogenase; InterPro IPR002872; KEGG: bba:Bd1251 1-pyrroline-5 carboxylate dehydrogenase; PFAM: proline dehydrogenase; SPTR: B4VMU2 delta-1-pyrroline-5-carboxylate dehydrogenase, PFAM: proline dehydrogenase
YP_003805983.1	KEGG: dol:Dole_3245 hypothetical protein; SPTR: A9A0C9 Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395)
YP_003805984.1	InterPro IPR001455; KEGG: tye:THEYE_A1506 hypothetical protein; PFAM: SirA family protein; SPTR: B5YGA5 Putative uncharacterized protein; PFAM: SirA-like protein
YP_003805985.1	KEGG: dol:Dole_3247 hypothetical protein; SPTR: A9A0D1 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3343)
YP_003805986.1	InterPro IPR000631; KEGG: dat:HRM2_44810 hypothetical protein; PFAM: protein of unknown function UPF0031; SPTR: C0QF36 Putative uncharacterized protein; PFAM: carbohydrate kinase
YP_003805987.1	KEGG: adg:Adeg_0943 hypothetical protein; SPTR: C9RCV2 Putative uncharacterized protein
YP_003805988.1	COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873:IPR020845; KEGG: ade:Adeh_2886 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Q2IDJ9 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003805989.1	COGs: COG2406 Protein distantly related to ferritins; InterProIPR008331:IPR009040:IPR009078:IPR012347:IPR 014490; KEGG: mhu:Mhun_0131 ferritin and Dps; PFAM: ferritin Dps family protein; SPTR: Q2FMS4 ferritin and Dps; PFAM: ferritin-like domain
YP_003805990.1	COGs: COG2271 Sugar phosphate permease; InterPro IPR011701:IPR016196; KEGG: dol:Dole_3001 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8ZZ31 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003805991.1	KEGG: bba:Bd1662 hypothetical protein; SPTR: A3ZNI2 Putative uncharacterized protein
YP_003805992.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013767:IPR003018:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000014:IPR011006:IPR009082:IPR019825:I PR004358; KEGG: dal:Dalk_2518 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; response regulator receiver; SPTR: B8FFF1 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003805993.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131; KEGG: dat:HRM2_48490 outer membrane protein; PFAM: outer membrane efflux protein; SPTR: C0QIF3 Outer membrane protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_003805994.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR000731:IPR004764; KEGG: dde:Dde_0401 hydrophobe/amphiphile efflux-1 HAE1; PFAM: acriflavin resistance protein; SPTR: Q316E4 Hydrophobe/amphiphile efflux-1 HAE1; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_003805995.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dde:Dde_0402 secretion protein HlyD; PFAM: secretion protein HlyD family protein; SPTR: Q316E3 Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003805996.1	COGs: COG4651 Kef-type K+ transport system predicted NAD-binding component; InterPro IPR006153:IPR003148:IPR006037:IPR016040; KEGG: dvm:DvMF_1119 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; SPTR: B8DKB1 Sodium/hydrogen exchanger; PFAM: TrkA-N domain; TrkA-C domain; Sodium/hydrogen exchanger family; TIGRFAM: potassium efflux system protein
YP_003805997.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: noc:Noc_1509 UDP-sulfoquinovose synthase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-sulfoquinovose synthase; SPTR: Q3JB02 UDP-sulfoquinovose synthase; PFAM: NAD dependent epimerase/dehydratase family
YP_003805998.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073:IPR005945:IPR002410; KEGG: mpl:Mpal_1914 proline-specific peptidase; PFAM: alpha/beta hydrolase fold; SPTR: B8GKS2 proline-specific peptidase; TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold; TIGRFAM: proline-specific peptidases, Bacillus coagulans-type subfamily
YP_003805999.1	COGs: COG0029 Aspartate oxidase; InterPro IPR003953:IPR015939:IPR005288:IPR013027; KEGG: gau:GAU_0434 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: C1A5G6 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase
YP_003806000.1	COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR002638:IPR004393:IPR013785; KEGG: bpt:Bpet0626 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: A9I465 Nicotinate-mononucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase
YP_003806001.1	COGs: COG0379 Quinolinate synthase; InterPro IPR003473; KEGG: dhd:Dhaf_0917 quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: B8FY93 Quinolinate synthetase complex, A subunit; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit
YP_003806002.1	COGs: COG1827 small molecule binding protein (contains 3H domain); InterPro IPR013196:IPR004173:IPR011991; KEGG: dae:Dtox_2254 helix-turn-helix type 11 domain protein; PFAM: 3H domain protein; Helix-turn-helix type 11 domain protein; SPTR: C8VZU0 Helix-turn-helix type 11 domain protein; PFAM: HTH domain; 3H domain
YP_003806003.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR003661:IPR003594:IPR005467:IPR 000014:IPR009082:IPR004358; KEGG: cag:Cagg_2683 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: B8G4S5 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806004.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006092:IPR006091:IPR006090:IPR009100:IPR 009075:IPR006089:IPR013786:IPR013764; KEGG: mxa:MXAN_3048 acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; PRIAM: Isovaleryl-CoA dehydrogenase; SPTR: A1ZFB4 Acyl-CoA dehydrogenase, long-chain specific; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003806005.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterProIPR001753:IPR006176:IPR008927:IPR016040:IPR 013328; KEGG: hoh:Hoch_3456 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; SPTR: D0LW26 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; PFAM: enoyl-CoA hydratase/isomerase family
YP_003806006.1	COGs: COG2186 Transcriptional regulators; InterPro IPR000524:IPR011711:IPR011991; KEGG: mta:Moth_2304 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; SPTR: Q2RG48 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_003806007.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR005467:IPR 009082:IPR004358; KEGG: dma:DMR_10790 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C4XL31 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003806008.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR011006:IPR 009057:IPR003593:IPR020441; KEGG: tye:THEYE_A0743 response regulator HsfA; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: B9ZPP2 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003806009.1	COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547:IPR002645; KEGG: dde:Dde_3641 sulfate permease; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Q30V62 Sulfate permease; PFAM: Sulfate transporter family; STAS domain; TIGRFAM: high affinity sulphate transporter 1
YP_003806010.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dat:HRM2_40350 response regulator receiver domain protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C0QC76 Response regulator receiver domain protein; PFAM: Response regulator receiver domain
YP_003806011.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR003661:IPR003594:IPR005467:IPR009082:IPR 004358; KEGG: dal:Dalk_2933 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: B8FKY8 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003806012.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: sfu:Sfum_0656 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: A0LG03 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003806013.1	KEGG: dol:Dole_2332 histidine kinase A domain-containing protein; SPTR: A8ZV46 Histidine kinase A domain protein
YP_003806014.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2936 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FKZ1 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003806015.1	KEGG: similar to CG6619 CG6619-PA; SPTR: C1MP00 endonuclease/exonuclease/phosphatase
YP_003806016.1	COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR001789:IPR011006; KEGG: dma:DMR_37700 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C4XMD6 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003806017.1	COGs: COG1639 signal transduction protein; InterPro IPR001789:IPR013976:IPR011006:IPR014626; KEGG: dma:DMR_37710 response regulator receiver protein; PFAM: Metal-dependent hydrolase HDOD; response regulator receiver; SMART: response regulator receiver; SPTR: C4XMD7 Response regulator receiver protein; PFAM: Response regulator receiver domain; HDOD domain
YP_003806018.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013656:IPR013767:IPR003594:IPR005467:IPR 000014:IPR000700:IPR001610:IPR004358; KEGG: dma:DMR_38800 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C4XN68 Sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806019.1	COGs: COG2202 FOG: PAS/PAC domain; InterProIPR001789:IPR013656:IPR013767:IPR000014:IPR 000700:IPR011006; KEGG: mac:MA1267 sensory transduction histidine kinase; PFAM: response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: response regulator receiver; PAS domain containing protein; SPTR: B3U4S0 Response regulator receiver; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806020.1	COGs: COG3359 exonuclease; InterPro IPR012337; KEGG: dal:Dalk_5288 hypothetical protein; SPTR: B8FEH6 Putative uncharacterized protein
YP_003806021.1	KEGG: dba:Dbac_2125 peptidase M48 Ste24p; SPTR: C7LNY5 peptidase M48 Ste24p
YP_003806022.1	COGs: COG2518 Protein-L-isoaspartate carboxylmethyltransferase; InterPro IPR000682; KEGG: sat:SYN_01000 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; PRIAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: Q2LUT4 Protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_003806023.1	COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005268; KEGG: rxy:Rxyl_0512 hypothetical protein; SPTR: Q1AYP2 Putative uncharacterized protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1
YP_003806025.1	COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035:IPR020855:IPR005925; KEGG: mgm:Mmc1_3564  agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: C8R0F8 Agmatinase; TIGRFAM: agmatinase; PFAM: Arginase family; TIGRFAM: agmatinase
YP_003806026.1	InterPro IPR013655:IPR000014:IPR000700:IPR001610; KEGG: dal:Dalk_0127  PAS/PAC sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAC repeat-containing protein; SPTR: B8FKM2 Putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box
YP_003806027.1	COGs: COG4273 conserved hypothetical protein; InterPro IPR014958; KEGG: sfu:Sfum_3599 hypothetical protein; PFAM: DGC domain protein; SPTR: A0LPB7 Putative uncharacterized protein; manually curated; PFAM: DGC domain
YP_003806028.1	InterPro IPR006016:IPR006015:IPR014729; KEGG: dol:Dole_1330 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZYM9 UspA domain protein; PFAM: Universal stress protein family
YP_003806029.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dol:Dole_1361 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: A8ZYR0 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003806030.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR001789:IPR003661:IPR003594:IPR005467:IPR 011006:IPR009082:IPR004358; KEGG: dal:Dalk_2254 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SPTR: B8FIF7 Sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003806031.1	COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR001898; KEGG: dol:Dole_1359 anion transporter; PFAM: sodium/sulphate symporter; SPTR: A8ZYQ8 Anion transporter; TIGRFAM: anion transporter; PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter
YP_003806032.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2251 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FIF4 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003806033.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2250 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FIF3 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003806034.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR003661:IPR003594:IPR005467:IPR009082:IPR 004358; KEGG: dal:Dalk_2249 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: B8FIF2 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003806035.1	InterPro IPR011006; KEGG: gau:GAU_2230 NarL family two-component response regulator; SPTR: C1A9U5 NarL family two-component response regulator
YP_003806036.1	COGs: COG4564 Signal transduction histidine kinase; InterProIPR013656:IPR011712:IPR003594:IPR005467:IPR 000014:IPR000700; KEGG: reh:H16_A0780 signal transduction histidine kinase; PFAM: PAS fold-4 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: PAS domain containing protein; ATP-binding region ATPase domain protein; SPTR: Q0KDJ4 Signal transduction histidine kinase containing PAS/PAC sensor domain; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box
YP_003806037.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR001789:IPR000792:IPR011006:IPR016032:IPR 011991; KEGG: gsu:GSU3229 LuxR family DNA-binding response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Q747N6 DNA-binding response regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_003806038.1	KEGG: gvi:gvip286 carbon dioxide concentrating mechanism protein; SPTR: Q7NIT9 carbon dioxide concentrating mechanism protein
YP_003806039.1	COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR003018:IPR003594:IPR005467:IPR009082:IPR 004358; KEGG: sfu:Sfum_0281 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; SPTR: Q2YZR5 Sensor protein; PFAM: GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003806040.1	InterPro IPR013740:IPR017936:IPR012336:IPR012335; KEGG: afe:Lferr_0206 redoxin domain protein; PFAM: redoxin domain protein; SPTR: C6MAN3 thioredoxin family protein; PFAM: redoxin
YP_003806041.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: chy:CHY_0600 metallo-beta-lactamase family protein; SPTR: Q3AEH8 Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily
YP_003806042.1	InterPro IPR011990; KEGG: sfu:Sfum_0584 hypothetical protein; SPTR: A0LFT1 Putative uncharacterized protein
YP_003806043.1	InterPro IPR017896:IPR017900; KEGG: sfu:Sfum_3217 hypothetical protein; SPTR: A0LN88 Putative uncharacterized protein
YP_003806044.1	COGs: COG1592 Rubrerythrin; InterProIPR003251:IPR004039:IPR009040:IPR009078:IPR 012347; KEGG: dol:Dole_2183 rubrerythrin; PFAM: Rubrerythrin; rubredoxin-type Fe(Cys)4 protein; SPTR: A8ZUF5 Rubrerythrin; PFAM: Rubrerythrin
YP_003806045.1	COGs: COG2337 Growth inhibitor; InterPro IPR003477:IPR011067; KEGG: pph:Ppha_0265 transcriptional modulator of MazE/toxin, MazF; PFAM: PemK family protein; SPTR: B0BJH3 Putative integron gene cassette protein; PFAM: PemK-like protein
YP_003806046.1	COGs: COG2336 Growth regulator; InterPro IPR007159; KEGG: dra:DR_0416 ppGpp-regulated growth inhibitor suppressor ChpR/MazE, PFAM: SpoVT/AbrB domain protein; SPTR: Q9RX99 PpGpp-regulated growth inhibitor suppressor ChpR/MazE, PFAM: SpoVT / AbrB like domain
YP_003806047.1	KEGG: hmo:HM1_0635 hypothetical protein; SPTR: A6BZ10 Putative uncharacterized protein
YP_003806048.1	InterPro IPR011637; KEGG: dol:Dole_2885 DoxX family protein; PFAM: DoxX family protein; SPTR: A8ZYG3 DoxX family protein; PFAM: methylamine utilisation protein MauE
YP_003806049.1	InterPro IPR001763; KEGG: dba:Dbac_0382 rhodanese domain protein; SMART: rhodanese domain protein; SPTR: C0GSB7 rhodanese domain protein; PFAM: rhodanese-like domain
YP_003806050.1	COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: sfu:Sfum_1392 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: A0LI31 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase
YP_003806051.1	COGs: COG1778 Low specificity phosphatase (HAD superfamily); KEGG: dat:HRM2_27830 KdsC; SPTR: C0QJ60 KdsC; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
YP_003806052.1	KEGG: dat:HRM2_34640 hypothetical protein; SPTR: B2DD79 Putative uncharacterized protein
YP_003806053.1	COGs: COG1636 conserved hypothetical protein; InterPro IPR003828; KEGG: dat:HRM2_23120 hypothetical protein; PFAM: protein of unknown function DUF208; SPTR: C0QER5 Putative uncharacterized protein; PFAM: Uncharacterized BCR, COG1636
YP_003806054.1	KEGG: dde:Dde_2148 chemotaxis protein CheZ, SPTR: C8QZ51 Putative chemotaxis phosphatase, CheZ; PFAM: Chemotaxis phosphatase, CheZ
YP_003806055.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: sat:SYN_00971 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Q2LSK6 methyl-accepting chemotaxis protein; PFAM: Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003806056.1	COGs: COG3118 thioredoxin domain-containing protein; InterProIPR013766:IPR017936:IPR012336:IPR017937:IPR 005746:IPR006662:IPR012335; KEGG: tmz:Tmz1t_0651 thioredoxin; PFAM: thioredoxin domain; SPTR: C4ZN11 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin; TIGRFAM: thioredoxin
YP_003806057.1	COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702:IPR000182:IPR016181; KEGG: dat:HRM2_05020  4-hydroxybutyrate CoA-transferase; PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; SPTR: C0QHQ8 Putative 4-hydroxybutyrate CoA-transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; acetyltransferase (GNAT) family
YP_003806058.1	KEGG: fal:FRAAL0050  protein serine/threonine kinase; SPTR: Q0RUK6 Putative uncharacterized protein
YP_003806059.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR001753:IPR006176:IPR006108:IPR016040:IPR 008927:IPR018376:IPR013328; KEGG: 3-hydroxyacyl-CoA dehyrogenase, PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: B9RKN5 3-hydroxyacyl-CoA dehyrogenase, PFAM: enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_003806060.1	COGs: COG1309 Transcriptional regulator; InterProIPR001647:IPR011075:IPR009057:IPR012287:IPR 015893; KEGG: dal:Dalk_2545 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FFH8 Transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family
YP_003806061.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155:IPR016038; KEGG: afu:AF1028 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acyltransferase; SPTR: O29234 3-ketoacyl-CoA thiolase (FadA-1); TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_003806062.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR013163:IPR013767:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000014:IPR000700:IPR011006:IPR009082:I PR001610:IPR004358; KEGG: dol:Dole_3265 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; Cache type 2 domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver; SPTR: A9A0Q1 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Cache domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806063.1	COGs: COG0139 phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496; KEGG: dal:Dalk_3405 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; PRIAM: phosphoribosyl-AMP cyclohydrolase; SPTR: B8FLE7 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase
YP_003806064.1	COGs: COG0040 ATP phosphoribosyltransferase; InterProIPR013820:IPR013115:IPR011322:IPR018198:IPR 015867; KEGG: dal:Dalk_3406 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain; PRIAM: ATP phosphoribosyltransferase; SPTR: B8FLE8 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase
YP_003806065.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR004839:IPR015424:IPR004838:IPR001176:IPR 015421; KEGG: dol:Dole_1584 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: A8ZZY8 Aminotransferase class I and II; PFAM: Aminotransferase class I and II
YP_003806066.1	COGs: COG0218 GTPase; InterPro IPR002917:IPR019987; KEGG: gbm:Gbem_3815 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; SPTR: C6MMA7 Small GTP-binding protein domain protein; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain
YP_003806067.1	COGs: COG4802 Ferredoxin-thioredoxin reductase catalytic subunit; InterPro IPR004209; KEGG: dol:Dole_2967 hypothetical protein; SPTR: A8ZYZ7 Putative uncharacterized protein; PFAM: Ferredoxin thioredoxin reductase catalytic beta chain
YP_003806068.1	COGs: COG0695 Glutaredoxin and related protein; InterPro IPR002109:IPR012336:IPR012335; KEGG: dol:Dole_2968 glutaredoxin; PFAM: glutaredoxin; SPTR: A8ZYZ8 Glutaredoxin; PFAM: Glutaredoxin
YP_003806069.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060:IPR009057:IPR018062; KEGG: gvi:glr0326 AraC family transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Q7NNT4 AraC family transcriptional regulatory protein
YP_003806070.1	InterPro IPR011701:IPR016196; KEGG: mxa:MXAN_5357 RhtX/FptX family siderophore transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Q1D1G6 Siderophore transporter, RhtX/FptX family; PFAM: Major Facilitator Superfamily
YP_003806071.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_5103 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: D1JG71 Putative uncharacterized protein; PFAM: methyltransferase domain
YP_003806072.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR010105; KEGG: rru:Rru_A0865 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C1SI40 Outer membrane receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor
YP_003806073.1	COGs: COG1355 dioxygenase; InterPro IPR002737; KEGG: pca:Pcar_1651 dioxygenase; PFAM: protein of unknown function DUF52; SPTR: C8QZ40 Putative uncharacterized protein; PFAM: Memo-like protein
YP_003806074.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterProIPR020058:IPR008925:IPR001412:IPR004527:IPR 020060:IPR014729:IPR020061:IPR020751; KEGG: sfu:Sfum_1366 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: A0LI05 Glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family
YP_003806075.1	InterPro IPR019734:IPR011990; KEGG: cts:Ctha_0459 hypothetical protein; SPTR: C4RCN7 hypothetical protein
YP_003806076.1	KEGG: dde:Dde_3396 hypothetical protein; SPTR: Q30VV6 Putative uncharacterized protein
YP_003806077.1	InterPro IPR000182:IPR016181; KEGG: pna:Pnap_3112 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: B1FBS0 heparinase II/III family protein; PFAM: acetyltransferase (GNAT) family
YP_003806078.1	InterProIPR001584:IPR012337:IPR009061:IPR009057:IPR 012287; KEGG: dvu:DVU1140 bacteriophage transposase A protein, PFAM: integrase catalytic region; SPTR: Q72CZ1 Bacteriophage transposase A protein, PFAM: Mu DNA binding, I gamma subdomain; Mu DNA-binding domain; integrase core domain
YP_003806079.1	KEGG: dvm:DvMF_0711 hypothetical protein; SPTR: B8DK72 Putative uncharacterized protein; manually curated
YP_003806080.1	COGs: COG2932 transcriptional regulator protein; InterProIPR001387:IPR019759:IPR015927:IPR010982:IPR 011056; KEGG: csa:Csal_1365  phage repressor; PFAM: helix-turn-helix domain protein; peptidase S24/S26A/S26B, conserved region; SMART: helix-turn-helix domain protein; SPTR: Q1QXT8 Putative phage repressor; PFAM: Helix-turn-helix; peptidase S24-like
YP_003806081.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104:IPR011010:IPR013762; KEGG: pde:Pden_3122 phage integrase family protein; PFAM: integrase family protein; SPTR: B6BEF5 Phage integrase; PFAM: Phage integrase family
YP_003806082.1	InterPro IPR009061:IPR010093; KEGG: pla:Plav_1818 hypothetical protein; SPTR: A7HU52 Putative uncharacterized protein; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family
YP_003806084.1	KEGG: eic:NT01EI_1130 outer membrane usher protein FimD, SPTR: B8A6Z1 Putative uncharacterized protein
YP_003806085.1	KEGG: dol:Dole_2951 hypothetical protein; SPTR: A8ZYY1 Putative uncharacterized protein
YP_003806086.1	KEGG: ank:AnaeK_1667 protein of unknown function DUF323; SPTR: B4ULN8 Putative uncharacterized protein
YP_003806087.1	KEGG: sen:SACE_2979 hypothetical protein; SPTR: A4FDY2 Putative uncharacterized protein
YP_003806088.1	KEGG: rce:RC1_0507 SMC family protein; SPTR: B6IR58 SMC family protein
YP_003806089.1	KEGG: aha:AHA_1305 protease LasA; SPTR: C7Z5G2 Putative uncharacterized protein
YP_003806090.1	COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR001576:IPR015824; KEGG: dal:Dalk_0244 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: phosphoglycerate kinase; SPTR: B8FMT6 phosphoglycerate kinase; PFAM: phosphoglycerate kinase
YP_003806091.1	COGs: COG2320 conserved hypothetical protein; InterPro IPR007344; KEGG: geo:Geob_2091 protein of unknown function UPF0157; PFAM: protein of unknown function UPF0157; SPTR: B9M8V0 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0157)
YP_003806092.1	InterPro IPR018247; KEGG: esa:ESA_03941 hypothetical protein; SPTR: A7MQ19 Putative uncharacterized protein
YP_003806093.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: hau:Haur_2614 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A9B0E3 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003806094.1	COGs: COG0033 phosphoglucomutase; InterProIPR005844:IPR005845:IPR005846:IPR005843:IPR 016055:IPR016066:IPR005852; KEGG: gur:Gura_2654 phosphoglucomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: A5G4W1 phosphoglucomutase, alpha-D-glucose phosphate-specific; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific
YP_003806095.1	COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: drt:Dret_1767 sodium:neurotransmitter symporter; PFAM: sodium:neurotransmitter symporter; SPTR: C8X3Q4 Sodium:neurotransmitter symporter; PFAM: Sodium:neurotransmitter symporter family
YP_003806096.1	KEGG: vfi:VF_2632 hypothetical protein; SPTR: B1WN40 Putative uncharacterized protein
YP_003806097.1	InterPro IPR009875:IPR003006; KEGG: dvl:Dvul_0573 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: Q728C0 Putative uncharacterized protein; PFAM: PilZ domain
YP_003806098.1	KEGG: tau:Tola_1087 PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: C4LDB7 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_003806099.1	InterPro IPR000883; KEGG: pca:Pcar_0850 hypothetical protein; SPTR: Q3A6A1 Putative uncharacterized protein; PFAM: cytochrome C and Quinol oxidase polypeptide I
YP_003806100.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: pca:Pcar_0852 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q3A699 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003806101.1	COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692:IPR014395; KEGG: dal:Dalk_4289 peptidase S45 penicillin amidase; PFAM: peptidase S45 penicillin amidase; SPTR: B8FMD1 peptidase S45 penicillin amidase; PFAM: Penicillin amidase
YP_003806102.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dal:Dalk_3768 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: B8FLV1 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family
YP_003806103.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013767:IPR003661:IPR003594:IPR001789:IPR 005467:IPR000014:IPR000700:IPR011006:IPR009082:IPR002226:I PR001610:IPR004358; KEGG: sfu:Sfum_1337 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; SPTR: B4D2K7 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806104.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123:IPR004552; KEGG: scl:sce3018 hypothetical protein; PFAM: phospholipid/glycerol acyltransferase; PRIAM: 1-acylglycerol-3-phosphate O-acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: A9GFN2 Putative uncharacterized protein; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_003806105.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013767:IPR003661:IPR003594:IPR001789:IPR 005467:IPR000014:IPR000700:IPR011006:IPR009082:IPR004358; KEGG: dal:Dalk_2075 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; SPTR: B8FG89 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806106.1	COGs: COG0686 Alanine dehydrogenase; InterProIPR007886:IPR007698:IPR016040:IPR008143:IPR 008141; KEGG: dvu:DVU0571 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; PRIAM: Alanine dehydrogenase; SPTR: Q72EK7 Alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase
YP_003806107.1	InterPro IPR006016:IPR006015:IPR014729; KEGG: dma:DMR_39250  universal stress protein; PFAM: UspA domain protein; SPTR: C4XNB3 Putative universal stress protein; PFAM: Universal stress protein family
YP_003806108.1	InterPro IPR001647:IPR011075:IPR009057:IPR015893; KEGG: nca:Noca_4300 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: A1SPR2 Transcriptional regulator; PFAM: YsiA-like protein, C-terminal region
YP_003806109.1	KEGG: dal:Dalk_2308 cache, type 2 domain protein; SPTR: B8FIL1 Cache, type 2 domain protein
YP_003806110.1	COGs: COG2183 Transcriptional accessory protein; InterProIPR018974:IPR003029:IPR016027:IPR006641:IPR 012340; KEGG: sfu:Sfum_1838 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; SPTR: A0LJC1 RNA binding S1 domain protein; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain
YP_003806111.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dol:Dole_0337 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A8ZSY3 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003806112.1	COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027:IPR004099:IPR001763:IPR016156; KEGG: hor:Hore_02400 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: rhodanese domain protein; SPTR: B8D132 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; rhodanese-like domain
YP_003806113.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: sco:SCO0391 transferase; PFAM: glycosyl transferase group 1; SPTR: Q8KN06 Putative glycosyl transferase; PFAM: glycosyl transferases group 1
YP_003806114.1	InterPro IPR005358; KEGG: dvm:DvMF_2337 protein of unknown function UPF0153; PFAM: protein of unknown function UPF0153; SPTR: B8DII0 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)
YP_003806115.1	COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; InterPro IPR003382:IPR004507; KEGG: etr:ETAE_2408 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; SPTR: D0ZB09 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases
YP_003806116.1	COGs: COG1945 conserved hypothetical protein; InterPro IPR002724:IPR016104; KEGG: aba:Acid345_1944 pyruvoyl-dependent arginine decarboxylase; PFAM: Pyruvoyl-dependent arginine decarboxylase; PRIAM: Arginine decarboxylase; SPTR: Q1IQA5 Arginine decarboxylase; TIGRFAM: arginine decarboxylase, pyruvoyl-dependent; PFAM: Pyruvoyl-dependent arginine decarboxylase (PvlArgDC); TIGRFAM: arginine decarboxylase, pyruvoyl-dependent
YP_003806117.1	KEGG: bpm:BURPS1710b_3218 AraC family transcriptional regulator; SPTR: Q3JPB4 Transcriptional regulator, AraC family
YP_003806118.1	KEGG: mno:Mnod_6660 hypothetical protein; SPTR: B8IRN9 Putative uncharacterized protein
YP_003806119.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: rmr:Rmar_1316 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: D0MI98 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_003806120.1	COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; InterPro IPR001926; KEGG: dal:Dalk_2543 1-aminocyclopropane-1-carboxylate deaminase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; PRIAM: 1-aminocyclopropane-1-carboxylate deaminase; SPTR: B8FFH6 1-aminocyclopropane-1-carboxylate deaminase; PFAM: pyridoxal-phosphate dependent enzyme
YP_003806121.1	COGs: COG3264 Small-conductance mechanosensitive channel; InterProIPR008910:IPR006685:IPR011066:IPR010920:IPR 011014; KEGG: pca:Pcar_2469  transport protein; PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; SPTR: Q3A1P9 Putative transport protein; PFAM: Mechanosensitive ion channel; Conserved TM helix
YP_003806122.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: chy:CHY_0845 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Q3ADT8 Long-chain-fatty-acid--CoA ligase; PFAM: AMP-binding enzyme
YP_003806123.1	COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterProIPR004137:IPR011254:IPR010048:IPR016100:IPR 016099; KEGG: dma:DMR_35370 hydroxylamine reductase; PFAM: Prismane; SPTR: C4XL87 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: hydroxylamine reductase
YP_003806124.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: dvl:Dvul_2351 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: Q72EH7 Phenylacetic acid degradation protein PaaI; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003806125.1	InterPro IPR002657; KEGG: sfu:Sfum_1523 bile acid:sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: A0LIF9 Bile acid:sodium symporter
YP_003806126.1	COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: gme:Gmet_0034 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: Q39ZP0 Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase
YP_003806127.1	COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645:IPR003658; KEGG: swo:Swol_1795 anti-anti-sigma regulatory factor, SpoIIAA; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Q0AW11 Anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_003806128.1	COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702:IPR000182:IPR016181; KEGG: sfu:Sfum_0746 acetyl-CoA hydrolase/transferase; PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; SPTR: A0LG92 Acetyl-CoA hydrolase/transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; acetyltransferase (GNAT) family
YP_003806129.1	COGs: COG4564 Signal transduction histidine kinase; InterPro IPR013163; KEGG: dma:DMR_14010 methyl-accepting chemotaxis protein; PFAM: Cache type 2 domain protein; SPTR: C4XMV1 methyl-accepting chemotaxis protein; PFAM: Cache domain
YP_003806130.1	COGs: COG4564 Signal transduction histidine kinase; InterPro IPR013163; KEGG: dma:DMR_14010 methyl-accepting chemotaxis protein; PFAM: Cache type 2 domain protein; SPTR: C4XMV1 methyl-accepting chemotaxis protein; PFAM: Cache domain
YP_003806131.1	COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: dal:Dalk_3461 cation diffusion facilitator family transporter; PFAM: cation efflux protein; SPTR: B8FLK3 Cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_003806132.1	COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: sfu:Sfum_3054 MgtC/SapB transporter; PFAM: MgtC/SapB transporter; SPTR: A0LMS6 MgtC/SapB transporter; PFAM: MgtC family
YP_003806133.1	COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: pgn:PGN_1601 conserved hypothetical protein with LemA family domain; PFAM: LemA family protein; SPTR: Q7MX55 LemA protein; PFAM: LemA family
YP_003806134.1	KEGG: sat:SYN_00536  cytoplasmic protein; SPTR: Q2LR08 Hypothetical cytosolic protein; PFAM: Nucleotidyltransferase domain
YP_003806135.1	COGs: COG1512 beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: sus:Acid_0973 hypothetical protein; PFAM: protein of unknown function DUF477; SPTR: Q02AF1 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF477)
YP_003806136.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR001623:IPR002939:IPR008971:IPR018253:IPR 003095; KEGG: sat:SYN_00894 chaperone protein; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Q2LTT1 Chaperone protein; PFAM: DnaJ domain; DnaJ C terminal region
YP_003806137.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: dal:Dalk_2351 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Q1NVV5 Chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003806138.1	COGs: COG1639 signal transduction protein; InterPro IPR013976:IPR003607:IPR006675; KEGG: dba:Dbac_0476  signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: Q1NMB7 Metal-dependent phosphohydrolase, HD subdomain; TIGRFAM: metal dependent phophohydrolase; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG
YP_003806139.1	KEGG: dsa:Desal_2720 hypothetical protein; SPTR: C6BZD7 Putative uncharacterized protein
YP_003806140.1	COGs: COG0009 Putative translation factor (SUA5); InterPro IPR006070:IPR017945:IPR004388; KEGG: ank:AnaeK_1405 SUA5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SPTR: Q1NKA5 Sua5/YciO/YrdC/YwlC; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_003806141.1	COGs: COG0151 phosphoribosylamine-glycine ligase; InterProIPR020562:IPR020561:IPR020560:IPR000031:IPR 011761:IPR016185:IPR011054:IPR020559:IPR000115:IPR013817:I PR013815:IPR013816; KEGG: dal:Dalk_2057 phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain; 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PRIAM: phosphoribosylamine--glycine ligase., phosphoribosylaminoimidazole carboxylase; SPTR: B8FG72 phosphoribosylamine/glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: phosphoribosylglycinamide synthetase, N domain; AIR carboxylase; phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; phosphoribosylaminoimidazole carboxylase, PurE protein
YP_003806142.1	COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR011607:IPR013982; KEGG: glo:Glov_2760 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; PRIAM: phosphoribosylaminoimidazolecarboxamide formyltransferase; SPTR: B3E7F6 Bifunctional purine biosynthesis protein purH; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain
YP_003806143.1	COGs: COG0443 Molecular chaperone; InterPro IPR013126:IPR018181:IPR012725:IPR001023; KEGG: aba:Acid345_0982 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Q1IT15 Chaperone protein dnaK; TIGRFAM: chaperone protein DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK
YP_003806144.1	InterPro IPR000835:IPR011991; KEGG: drm:Dred_0308 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: A4J1A3 Transcriptional regulator, MarR family; PFAM: MarR family
YP_003806145.1	KEGG: dal:Dalk_2494 hypothetical protein; SPTR: B8FFC7 Putative uncharacterized protein
YP_003806146.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: sfu:Sfum_3400 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: A0LNS1 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region
YP_003806147.1	COGs: COG1540 conserved hypothetical protein; InterPro IPR005501; KEGG: sfu:Sfum_3392 LamB/YcsF family protein; PFAM: LamB/YcsF family protein; SPTR: A0LNR3 UPF0271 protein Sfum_3392; PFAM: LamB/YcsF family
YP_003806148.1	COGs: COG2049 Allophanate hydrolase subunit 1; InterPro IPR003833:IPR003778:IPR010016; KEGG: sth:STH379  allophanate hydrolase; PFAM: Allophanate hydrolase subunit 1; Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 1; Allophanate hydrolase subunit 2; SPTR: Q67SH9 Putative allophanate hydrolase; PFAM: Metallo-beta-lactamase superfamily; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: conserved hypothetical protein TIGR00370; biotin-dependent carboxylase uncharacterized domain
YP_003806149.1	KEGG: sfu:Sfum_0274 hypothetical protein; SPTR: A0LEX3 Putative uncharacterized protein
YP_003806150.1	KEGG: mta:Moth_2363  transmembrane transcriptional regulator (anti-sigma factor); SPTR: Q2RFZ4 Putative transmembrane transcriptional regulator (Anti-sigma factor)
YP_003806151.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR007627:IPR013249:IPR013325:IPR013324:IPR 014284; KEGG: sfu:Sfum_0272 fis family transcriptional regulator; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: A0LEX1 Transcriptional regulator, Fis family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003806152.1	InterPro IPR002781; KEGG: dma:DMR_43930 hypothetical membrane protein; PFAM: protein of unknown function DUF81; SPTR: C4XR04 Hypothetical membrane protein; PFAM: Sulfite exporter TauE/SafE
YP_003806153.1	COGs: COG1720 conserved hypothetical protein; InterPro IPR001378; KEGG: drt:Dret_2266 protein of unknown function UPF0066; PFAM: protein of unknown function UPF0066; SPTR: C8X553 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0066; TIGRFAM: conserved hypothetical protein TIGR00104
YP_003806154.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR001638:IPR013656:IPR003661:IPR003594:IPR 005467:IPR000014:IPR000700:IPR009082:IPR001610:IPR004358; KEGG: dsa:Desal_2320 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: extracellular solute-binding protein family 3; PAS fold-4 domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: extracellular solute-binding protein family 3; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: Q1NWA7 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; PAS fold; TIGRFAM: PAS domain S-box
YP_003806155.1	KEGG: ote:Oter_2380 hypothetical protein; SPTR: C5S8G0 Putative uncharacterized protein
YP_003806156.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665:IPR006690:IPR006664; KEGG: nha:Nham_0236 OmpA/MotB; PFAM: OmpA/MotB domain protein; SPTR: Q1QRL1 OmpA/MotB; PFAM: OmpA family
YP_003806157.1	KEGG: mta:Moth_1438 hypothetical protein; SPTR: Q2RIJ0 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF364)
YP_003806158.1	COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: sfu:Sfum_3704 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A0LPM2 ABC transporter related; PFAM: ABC transporter
YP_003806159.1	COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: ppd:Ppro_1462 transport system permease protein; PFAM: transport system permease protein; SPTR: A1AP08 Transport system permease protein; PFAM: FecCD transport family
YP_003806160.1	COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: sfu:Sfum_3702 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: A0LPM0 Periplasmic binding protein; PFAM: Periplasmic binding protein
YP_003806161.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: ppd:Ppro_1470 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A1AP16 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: outer membrane autotransporter barrel domain
YP_003806162.1	COGs: COG1180 pyruvate-formate lyase-activating enzyme; InterPro IPR007197; KEGG: ppd:Ppro_1469 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SPTR: A1AP15 radical SAM domain protein; PFAM: Periplasmic binding protein; radical SAM superfamily
YP_003806163.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: ppd:Ppro_1468 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: A1AP14 methyltransferase type 11; PFAM: methyltransferase domain
YP_003806164.1	COGs: COG3153 acetyltransferase; InterPro IPR000182:IPR016181; KEGG: dhd:Dhaf_2458 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C6ISG3 acetyltransferase; PFAM: acetyltransferase (GNAT) family
YP_003806165.1	COGs: COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; InterPro IPR005546:IPR006315; KEGG: gdj:Gdia_0206 outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; SPTR: B5ZKP4 Outer membrane autotransporter barrel domain protein; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain
YP_003806166.1	COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: dol:Dole_0415 filamentation induced by cAMP protein Fic; PFAM: filamentation induced by cAMP protein Fic; SPTR: Q313X5 Fic family protein; manually curated; PFAM: Fic/DOC family
YP_003806167.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545:IPR001650:IPR014021:IPR014014:IPR 000629:IPR014001; KEGG: dal:Dalk_2316 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: B8FIL9 DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_003806168.1	KEGG: amc:MADE_02511 hypothetical protein; SPTR: Q1NRQ0 Putative uncharacterized protein
YP_003806169.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016:IPR006015:IPR014729; KEGG: rxy:Rxyl_0169 hypothetical protein; PFAM: UspA domain protein; SPTR: C6NV99 UspA domain protein; PFAM: Universal stress protein family
YP_003806170.1	InterPro IPR001173; KEGG: dal:Dalk_2929 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: B8FBH5 glycosyl transferase family 2; PFAM: glycosyl transferase family 2
YP_003806171.1	COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685:IPR011066:IPR010920; KEGG: mbu:Mbur_2331 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: D1JF06 Putative mechanosensitive channel protein; PFAM: Mechanosensitive ion channel
YP_003806172.1	COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523:IPR004488; KEGG: glo:Glov_2520 magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; SPTR: B3E687 Magnesium and cobalt transport protein CorA; TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
YP_003806173.1	COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399:IPR005829; KEGG: drt:Dret_0678 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related domain protein; SPTR: C8X0M3 Mammalian cell entry related domain protein; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein
YP_003806174.1	COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: sat:SYN_00410 ABC-type transport system, ATP-binding component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q2LS07 ABC-type transport system, ATP-binding component; PFAM: ABC transporter
YP_003806175.1	COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component; PFAM: protein of unknown function DUF140; SPTR: Q2LS08 ABC-type transport system involved in resistance to organic solvents, permease component; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein
YP_003806176.1	COGs: COG0351 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR013749:IPR004399; KEGG: pla:Plav_2132 phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; SPTR: A7HV13 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase
YP_003806177.1	COGs: COG0422 Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: adg:Adeg_0145 thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; SPTR: C9RAP0 Thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC
YP_003806178.1	COGs: COG3769 hydrolase (HAD superfamily); InterPro IPR013200:IPR006381:IPR006379; KEGG: rmr:Rmar_0501 mannosyl-3-phosphoglycerate phosphatase; PFAM: haloacid dehalogenase type 3; PRIAM: Mannosyl-3-phosphoglycerate phosphatase; SPTR: D0MEV3 Mannosyl-3-phosphoglycerate phosphatase; TIGRFAM: mannosyl-3-phosphoglycerate phosphatase family; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: mannosyl-3-phosphoglycerate phosphatase family; HAD-superfamily hydrolase, subfamily IIB; mannosyl-3-phosphoglycerate phosphatase
YP_003806179.1	COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterProIPR013196:IPR004143:IPR008988:IPR004408:IPR 011991; KEGG: hmo:HM1_0663 biotin-[acetyl-CoA-carboxylase] ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; SPTR: C0CZ52 Putative uncharacterized protein; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: HTH domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; BirA biotin operon repressor domain
YP_003806180.1	InterPro IPR000182:IPR016181; KEGG: dol:Dole_1891 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: B6B805 histone deacetylase superfamily; PFAM: acetyltransferase (GNAT) family
YP_003806181.1	COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011095:IPR011761:IPR013816; KEGG: sfu:Sfum_0713 D-alanine--D-alanine ligase domain-containing protein; PFAM: D-alanine--D-alanine ligase domain protein; SPTR: A0LG59 D-alanine--D-alanine ligase domain protein; PFAM: D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_003806182.1	COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011095:IPR011761:IPR013816; KEGG: sfu:Sfum_0712 D-alanine--D-alanine ligase domain-containing protein; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: A0LG58 D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_003806183.1	COGs: COG1509 lysine 2 3-aminomutase; InterPro IPR007197:IPR003739; KEGG: sfu:Sfum_0711 lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM domain protein; PRIAM: lysine 2,3-aminomutase; SPTR: A0LG57 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: lysine-2,3-aminomutase; radical SAM superfamily; TIGRFAM: KamA family protein
YP_003806184.1	KEGG: dat:HRM2_13270 hypothetical protein; SPTR: C0Q8U8 Putative uncharacterized protein
YP_003806185.1	KEGG: ter:Tery_1486 hypothetical protein; SPTR: Q115Q0 Putative uncharacterized protein; PFAM: Sulfotransferase family
YP_003806186.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR011006:IPR009057:IPR 003593; KEGG: dde:Dde_3040 two component Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: ATPase AAA; SPTR: Q30WW2 Two component transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Sigma-54 interaction domain
YP_003806187.1	COGs: COG1215 glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dat:HRM2_22260 HasA; PFAM: glycosyl transferase family 2; SPTR: C0QEI2 HasA; PFAM: glycosyl transferase family 2
YP_003806188.1	COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR005321:IPR016117; KEGG: svi:Svir_29210 L-aminopeptidase/D-esterase; PFAM: peptidase S58 DmpA; SPTR: C7MWD0 L-aminopeptidase/D-esterase; PFAM: peptidase family S58
YP_003806189.1	KEGG: aav:Aave_2301 hypothetical protein; SPTR: A1TPJ0 Putative uncharacterized protein
YP_003806190.1	KEGG: sfu:Sfum_3879 hypothetical protein; SPTR: A0LQ46 Putative uncharacterized protein
YP_003806191.1	KEGG: bbt:BBta_4129 hypothetical protein; SPTR: A8WY55 Putative uncharacterized protein
YP_003806192.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR007627:IPR013249:IPR013325:IPR013324:IPR 002011:IPR000838:IPR014284; KEGG: sfu:Sfum_3877 ECF subfamily RNA polymerase sigma-24 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: A0LQ44 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003806193.1	COGs: COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; InterPro IPR006148:IPR005900; KEGG: mrd:Mrad2831_2308 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; SPTR: B1LXU6 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase; PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase
YP_003806194.1	COGs: COG0364 Glucose-6-phosphate 1-dehydrogenase; InterPro IPR001282:IPR016040; KEGG: drt:Dret_2487 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; PRIAM: Glucose-6-phosphate dehydrogenase; SPTR: C8X5S2 Glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal domain; Glucose-6-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glucose-6-phosphate 1-dehydrogenase
YP_003806195.1	COGs: COG0021 Transketolase; InterProIPR005474:IPR005475:IPR005476:IPR009014:IPR 005478:IPR015941; KEGG: pna:Pnap_4499 transketolase; PFAM: transketolase; transketolase; SPTR: A6C7Q1 Transketolase; TIGRFAM: transketolase; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast
YP_003806196.1	KEGG: dol:Dole_2869 hypothetical protein; SPTR: A8ZYE7 Putative uncharacterized protein
YP_003806197.1	COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: dae:Dtox_0718 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C8W1I7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1015)
YP_003806198.1	COGs: COG4123 O-methyltransferase; InterPro IPR007848:IPR002052; KEGG: drt:Dret_0713 methyltransferase small; PFAM: methyltransferase small; SPTR: Q09D37 SAM-dependent methyltransferases; PFAM: methyltransferase small domain
YP_003806199.1	InterPro IPR007922; KEGG: ppd:Ppro_1102 hypothetical protein; PFAM: protein of unknown function DUF721; SPTR: A1AN07 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF721)
YP_003806200.1	COGs: COG0046 phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR000728:IPR010918:IPR016188; KEGG: dal:Dalk_3288 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; PRIAM: phosphoribosylformylglycinamidine synthase; SPTR: B8FJ51 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II
YP_003806201.1	COGs: COG0047 phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; InterPro IPR010075; KEGG: dol:Dole_0483 phosphoribosylformylglycinamidine synthase; PRIAM: phosphoribosylformylglycinamidine synthase; SPTR: A8ZTM9 phosphoribosylformylglycinamidine synthase
YP_003806202.1	COGs: COG3481 HD-superfamily hydrolase; InterPro IPR004365:IPR006674:IPR003607:IPR006675; KEGG: gsu:GSU1122 HD domain-containing protein; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; SMART: metal-dependent phosphohydrolase HD region; SPTR: C6MSS8 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; OB-fold nucleic acid binding domain; TIGRFAM: uncharacterized domain HDIG
YP_003806203.1	COGs: COG0125 Thymidylate kinase; InterPro IPR000062:IPR018095:IPR018094; KEGG: cyb:CYB_0832 thymidylate kinase; PFAM: thymidylate kinase; PRIAM: dTMP kinase; SPTR: Q2JN62 Thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase
YP_003806204.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: afw:Anae109_2451 DNA polymerase III, delta prime subunit; SPTR: A7HD56 DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta' subunit
YP_003806205.1	COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: dal:Dalk_0025 PSP1 domain protein; PFAM: PSP1 domain protein; SPTR: B8FKC0 PSP1 domain protein; PFAM: PSP1 C-terminal conserved region
YP_003806206.1	COGs: COG0143 Methionyl-tRNA synthetase; InterProIPR015413:IPR002547:IPR016027:IPR009080:IPR 002304:IPR004495:IPR014758:IPR014729:IPR012340; KEGG: dal:Dalk_0026 methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); t-RNA-binding domain protein; SPTR: B8FKC1 Methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, subunit beta; PFAM: tRNA synthetases class I (M); Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase
YP_003806207.1	InterPro IPR009875; KEGG: dde:Dde_2940 hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: Q30X62 Putative uncharacterized protein; PFAM: PilZ domain
YP_003806208.1	InterPro IPR008874; KEGG: lpf:plpl0013 hypothetical protein; PFAM: TraT complement resistance family protein; SPTR: Q5WRZ4 Putative uncharacterized protein; PFAM: Enterobacterial TraT complement resistance protein
YP_003806209.1	COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR000489:IPR011005; KEGG: dol:Dole_3182 dihydropteroate synthase DhpS; PFAM: dihydropteroate synthase DHPS; SPTR: A9A066 Dihydropteroate synthase DHPS; PFAM: Pterin binding enzyme
YP_003806210.1	COGs: COG1456 CO dehydrogenase/acetyl-CoA synthase subunit gamma (corrinoid Fe-S protein); InterPro IPR007202:IPR016041:IPR011005:IPR016218; KEGG: dal:Dalk_0682 acetyl-CoA decarbonylase/synthase complex subunit gamma; PFAM: CO dehydrogenase/acetyl-CoA synthase subunit delta, TIM barrel; Fe-S cluster domain protein; SPTR: B8FJV9 CO dehydrogenase/acetyl-CoA synthase subunit delta, TIM barrel; PFAM: Putative Fe-S cluster; CO dehydrogenase/acetyl-CoA synthase subunit delta
YP_003806211.1	COGs: COG1614 CO dehydrogenase/acetyl-CoA synthase subunit beta; InterPro IPR004461:IPR011254:IPR016099; KEGG: dal:Dalk_0681 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; PFAM: CO dehydrogenase/acetyl-CoA synthase complex subunit beta; PRIAM: CO-methylating acetyl-CoA synthase; SPTR: B8FJV8 CO dehydrogenase/acetyl-CoA synthase complex, subunit beta; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase complex, subunit beta; PFAM: CO dehydrogenase/acetyl-CoA synthase complex subunit beta; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase complex, subunit beta
YP_003806212.1	COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterProIPR004137:IPR011254:IPR010047:IPR016101:IPR 016099; KEGG: dat:HRM2_16670 CdhA; PFAM: Prismane; PRIAM: carbon-monoxide dehydrogenase (acceptor); SPTR: C0QAX6 CdhA; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit
YP_003806214.1	COGs: COG2069 CO dehydrogenase/acetyl-CoA synthase subunit delta (corrinoid Fe-S protein); InterPro IPR016041:IPR011005; KEGG: dol:Dole_3186 acetyl-CoA decarbonylase/synthase complex subunit delta; PFAM: CO dehydrogenase/acetyl-CoA synthase subunit delta, TIM barrel; SPTR: A9A070 CO dehydrogenase/acetyl-CoA synthase subunit delta; PFAM: CO dehydrogenase/acetyl-CoA synthase subunit delta; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase, subunit delta
YP_003806215.1	COGs: COG3640 CO dehydrogenase maturation factor; InterPro IPR002586:IPR014433; KEGG: dal:Dalk_1102 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: B8F959 Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003806216.1	COGs: COG0593 ATPase involved in DNA replication initiation; InterProIPR013317:IPR013159:IPR010921:IPR018312:IPR 003593:IPR001957:IPR020591; KEGG: hha:Hhal_1227 chromosomal replication initiation protein; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; ATPase AAA; SPTR: A1WWE0 Chromosomal replication initiator protein dnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA
YP_003806217.1	COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: gur:Gura_0002 DNA polymerase III, subunit beta; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III beta chain; SPTR: A5GDX2 DNA polymerase III, subunit beta; TIGRFAM: DNA polymerase III, subunit beta; PFAM: DNA polymerase III subunit beta, C-terminal domain; DNA polymerase III subunit beta, N-terminal domain; DNA polymerase III subunit beta, central domain; TIGRFAM: DNA polymerase III, subunit beta
YP_003806218.1	COGs: COG0295 Cytidine deaminase; InterPro IPR001638:IPR002125:IPR016193; KEGG: dde:Dde_1459 cytidine deaminase; PFAM: extracellular solute-binding protein family 3; CMP/dCMP deaminase zinc-binding; SMART: extracellular solute-binding protein family 3; SPTR: Q311Y8 Cytidine deaminase; PFAM: Bacterial extracellular solute-binding proteins, family 3; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric
YP_003806219.1	SPTR: A6GIX3 Putative uncharacterized protein
YP_003806220.1	InterPro IPR012336:IPR012335; KEGG: gur:Gura_0192 hypothetical protein; SPTR: A5GDC9 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255
YP_003806221.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR003018:IPR013767:IPR003661:IPR 003594:IPR001789:IPR005467:IPR000014:IPR000700:IPR011006:I PR009082:IPR004358; KEGG: gur:Gura_2707 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; response regulator receiver; SPTR: A5G513 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806222.1	KEGG: DHPS_1; dihydrodipicolinate synthase; SPTR: A4CF28 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
YP_003806223.1	SPTR: Q4RUU3 Chromosome 12 SCAF14993, whole genome shotgun sequence
YP_003806224.1	InterPro IPR002545; KEGG: dau:Daud_1560  CheW protein; SPTR: B1I533 Putative CheW protein; PFAM: CheW-like domain
YP_003806225.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR011006:IPR009057:IPR 003593; KEGG: dal:Dalk_0736  two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; ATPase AAA; SPTR: Q74EW8 Sigma-54 dependent DNA-binding response regulator; PFAM: Response regulator receiver domain; Sigma-54 interaction domain
YP_003806226.1	COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR013506:IPR006171:IPR002288:IPR 013760:IPR020568:IPR018522:IPR001241:IPR011557:IPR000565:I PR013759; KEGG: gsu:GSU0003 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: Q74H89 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; DNA gyrase, B subunit
YP_003806227.1	InterPro IPR000835:IPR011991; KEGG: cai:Caci_5835 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C3X2H5 Predicted protein
YP_003806228.1	InterPro IPR006342; KEGG: mlb:MLBr_02346 hypothetical protein; SPTR: B9YTU9 methyltransferase FkbM family; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family
YP_003806229.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155:IPR016038; KEGG: dol:Dole_2160 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: C0GEG4 Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_003806230.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: pag:PLES_58831  GGDEF domain protein; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: A3WM11 Signaling protein with a sensor domain and GGDEF domain; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003806231.1	COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: pca:Pcar_0019 hypothetical protein; PFAM: protein of unknown function UPF0027; SPTR: Q3A8L0 Putative uncharacterized protein; PFAM: Uncharacterized protein family UPF0027
YP_003806232.1	COGs: COG0778 Nitroreductase; InterPro IPR001450:IPR000415:IPR017896:IPR017900; KEGG: dol:Dole_1688 nitroreductase; PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A9A0J2 Nitroreductase; PFAM: Nitroreductase family
YP_003806233.1	COGs: COG0240 glycerol-3-phosphate dehydrogenase; InterProIPR011128:IPR006109:IPR008927:IPR016040:IPR 006168:IPR013328; KEGG: gem:GM21_0007 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; SPTR: C6E7R1 glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YP_003806234.1	COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterProIPR002205:IPR006691:IPR013760:IPR005743:IPR 013758:IPR013757; KEGG: pca:Pcar_0005 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: Q3A8M4 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit
YP_003806235.1	COGs: COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; InterPro IPR004435; KEGG: ppd:Ppro_0305 molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; SPTR: Q1NJ69 Molybdopterin-guanine dinucleotide biosynthesis MobB region; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: Molybdopterin guanine dinucleotide synthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein MobB
YP_003806236.1	InterPro IPR006674; KEGG: dps:DP1279 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: Q6ANR6 Putative uncharacterized protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG
YP_003806237.1	KEGG: dba:Dbac_2024 hypothetical protein; SPTR: C7LNE1 Putative uncharacterized protein
YP_003806238.1	COGs: COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation; InterPro IPR002218:IPR004417:IPR013027:IPR016040; KEGG: geo:Geob_1561 gid protein; PFAM: glucose-inhibited division protein A; PRIAM:methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase(FADH(2)-oxidizing); SPTR: Q1NQ71 Gid protein; TIGRFAM: gid protein; PFAM: Glucose inhibited division protein A; TIGRFAM: tRNA:m(5)U-54 methyltransferase
YP_003806239.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013655:IPR013767:IPR003661:IPR003594:IPR 005467:IPR000014:IPR000700:IPR009082:IPR001610:IPR004358; KEGG: ppd:Ppro_3150 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; PAS fold-3 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; SPTR: A1ATS3 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806240.1	COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR003682; KEGG: glo:Glov_3639 methyltransferase GidB; PFAM: glucose inhibited division protein; SPTR: B3E3R7 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB
YP_003806241.1	COGs: COG0486 GTPase; InterPro IPR018948:IPR002917:IPR004520:IPR005225; KEGG: hau:Haur_3441 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; SPTR: A9B3U1 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE
YP_003806242.1	COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: dsa:Desal_1067 single-stranded nucleic acid binding R3H domain protein; PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; SPTR: C6C0J7 Single-stranded nucleic acid binding R3H domain protein; PFAM: R3H domain
YP_003806243.1	COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708:IPR019998:IPR020001:IPR013308; KEGG: dps:DP0855 hypothetical protein; PFAM: 60 kDa inner membrane insertion protein; SPTR: Q6APY9 Conserved hypothetical membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain
YP_003806244.1	COGs: COG0759 conserved hypothetical protein; InterPro IPR002696; KEGG: sfu:Sfum_2596 hypothetical protein; PFAM: protein of unknown function DUF37; SPTR: A6C6L1 Putative uncharacterized protein; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein TIGR00278
YP_003806245.1	COGs: COG0594 RNase P protein component; InterPro IPR000100:IPR020568:IPR020539:IPR014721; KEGG: ppd:Ppro_3625 ribonuclease P protein component; PFAM: ribonuclease P protein; SPTR: A1AV46 ribonuclease P protein component; TIGRFAM: ribonuclease P protein component; manually curated; PFAM: ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial
YP_003806246.1	InterPro IPR000271; KEGG: drt:Dret_2142 ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: C8X4F2 ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type
YP_003806247.1	COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753:IPR004000; KEGG: sfu:Sfum_2592 rod shape-determining protein MreB; PFAM: cell shape determining protein MreB/Mrl; SMART: actin/actin family protein; SPTR: A0LLG8 Rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family
YP_003806248.1	COGs: COG1792 Cell shape-determining protein; InterPro IPR007221:IPR005223; KEGG: dol:Dole_0593 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: A8ZU91 Rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC
YP_003806249.1	InterPro IPR007227; KEGG: gem:GM21_1756 rod shape-determining protein MreD; SPTR: C6E6G9 Rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD
YP_003806250.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR012338:IPR017790; KEGG: geo:Geob_3477 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: peptidoglycan glycosyltransferase; SPTR: B9M5R1 Penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2
YP_003806251.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182:IPR006162:IPR018365:IPR011923; KEGG: gbm:Gbem_2459 rod shape-determining protein RodA; PFAM: cell cycle protein; SPTR: C6MMI9 Rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA
YP_003806252.1	COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: mxa:MXAN_7475 hypothetical protein; PFAM: protein of unknown function DUF583; SPTR: Q1CVJ5 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF583
YP_003806253.1	InterPro IPR002146; KEGG: sfu:Sfum_2587 fis family transcriptional regulator; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: A8ZU96 H+transporting two-sector ATPase B/B' subunit; PFAM: ATP synthase B/B' CF(0)
YP_003806254.1	COGs: COG0711 F0F1-type ATP synthase subunit b; InterPro IPR002146:IPR005864; KEGG: dal:Dalk_3630 ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: B8FGT8 ATP synthase subunit b; TIGRFAM: ATP synthase F0, B subunit; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b
YP_003806255.1	COGs: COG0712 F0F1-type ATP synthase subunit delta (mitochondrial oligomycin sensitivity protein); InterPro IPR000711; KEGG: dol:Dole_0600 F0F1 ATP synthase subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; SPTR: A8ZU98 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, subunit delta; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 subunit delta
YP_003806256.1	COGs: COG0056 F0F1-type ATP synthase subunit alpha; InterProIPR004100:IPR000194:IPR000793:IPR018118:IPR 020003:IPR005294; KEGG: dal:Dalk_3628 F0F1 ATP synthase subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SPTR: B8FGT6 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, subunit alpha; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 subunit alpha
YP_003806257.1	COGs: COG0224 F0F1-type ATP synthase subunit gamma; InterPro IPR000131:IPR018039; KEGG: dsa:Desal_3455 ATP synthase F1, subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma; SPTR: C0GL89 ATP synthase gamma chain; TIGRFAM: ATP synthase F1, subunit gamma; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 subunit gamma
YP_003806258.1	COGs: COG0055 F0F1-type ATP synthase subunit beta; InterProIPR004100:IPR000194:IPR000793:IPR018118:IPR 020003:IPR003593:IPR005722; KEGG: sfu:Sfum_2582 F0F1 ATP synthase subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA; SPTR: A0LLF8 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, subunit beta; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 subunit beta
YP_003806259.1	COGs: COG0355 F0F1-type ATP synthase subunit epsilon (mitochondrial subunit delta); InterPro IPR020546:IPR020547:IPR001469; KEGG: dma:DMR_04830 ATP synthase epsilon chain; PFAM: ATPase, F1 complex, delta/subunit epsilon-like; SPTR: C4XI12 ATP synthase epsilon chain; TIGRFAM: ATP synthase F1, subunit epsilon; PFAM: ATP synthase, delta/Epsilon chain, beta-sandwich domain; ATP synthase, delta/Epsilon chain, long alpha-helix domain; TIGRFAM: ATP synthase, F1 subunit epsilon (delta in mitochondria)
YP_003806260.1	InterPro IPR001087:IPR013830; KEGG: dal:Dalk_4253 hypothetical protein; PFAM: lipolytic protein G-D-S-L family; SPTR: B8FM96 Putative uncharacterized protein
YP_003806261.1	COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR001228; KEGG: ppd:Ppro_0501 UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: A1ALB2 Bifunctional protein glmU; PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
YP_003806262.1	COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; InterPro IPR000583:IPR001347:IPR017932:IPR005855; KEGG: pca:Pcar_2933 glucosamine--fructose-6-phosphate aminotransferase; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; SPTR: Q3A0D9 Glutamine--fructose-6-phosphate transaminase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
YP_003806263.1	KEGG: sat:SYN_03133  cytoplasmic protein; SPTR: Q2LRA2 Hypothetical cytosolic protein; PFAM: Protein of unknown function (DUF904)
YP_003806264.1	InterPro IPR007838; KEGG: hoh:Hoch_0116 protein of unknown function DUF710; PFAM: protein of unknown function DUF710; SPTR: D0LGL1 Putative uncharacterized protein; PFAM: Cell division protein ZapA
YP_003806265.1	COGs: COG1418 HD superfamily hydrolase; InterProIPR018111:IPR006674:IPR004088:IPR004087:IPR 003607:IPR017705:IPR006675; KEGG: sfu:Sfum_2578 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; SPTR: A0LLF4 2',3'-cyclic-nucleotide 2'-phosphodiesterase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG
YP_003806266.1	COGs: COG1692 conserved hypothetical protein; InterPro IPR004843:IPR005235; KEGG: mta:Moth_1083 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Q74E26 Ser/Thr protein phosphatase family protein; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: conserved hypothetical protein TIGR00282
YP_003806267.1	COGs: COG0162 Tyrosyl-tRNA synthetase; InterPro IPR002305:IPR002942:IPR002307:IPR014729; KEGG: sfu:Sfum_2577 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tyrosine--tRNA ligase; SPTR: A0LLF3 Tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase
YP_003806268.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_4880 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FDC5 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003806269.1	KEGG: mca:MCA0835 fic family protein; SPTR: Q60AL5 Fic family protein
YP_003806270.1	COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB); InterPro IPR001926:IPR006653:IPR006316; KEGG: glo:Glov_1213 tryptophan synthase subunit beta; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; PRIAM: Tryptophan synthase; SPTR: B3E755 pyridoxal-phosphate dependent TrpB-like enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme
YP_003806271.1	COGs: COG0565 rRNA methylase; InterPro IPR001537:IPR004384; KEGG: dma:DMR_35690  RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: C4XLC1 Putative RNA methyltransferase; PFAM: SpoU rRNA methylase family; TIGRFAM: RNA methyltransferase, TrmH family, group 1
YP_003806272.1	SPTR: Q56795 Juglandis copper-resistance genes
YP_003806273.1	COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: hch:HCH_04023 Co/Zn/Cd cation transporter; PFAM: cation efflux protein; SPTR: Q2SF35 Predicted Co/Zn/Cd cation transporters; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_003806274.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR011622:IPR011623:IPR000160:IPR018062; KEGG: dal:Dalk_2685 periplasmic/7TM domain sensor diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; SMART: GGDEF domain containing protein; SPTR: B8FIY6 Periplasmic/7TM domain sensor diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: 7TM diverse intracellular signalling; GGDEF domain; 7TMR-DISM extracellular 2; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003806275.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873:IPR020845; KEGG: mhu:Mhun_2392 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Q2FT08 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003806276.1	COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: bja:bll3651 O-antigen export system ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q89P32 RfbA protein; PFAM: ABC transporter
YP_003806277.1	COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: cef:CE0178  O-antigen export system permease protein; PFAM: ABC transporter; SPTR: C0XTW7 ABC superfamily ATP binding cassette transporter, permease protein; manually curated; PFAM: ABC transporter
YP_003806278.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mta:Moth_1443 UbiE/COQ5 methyltransferase; PFAM: methyltransferase type 11; SPTR: Q2RII5 UbiE/COQ5 methyltransferase; PFAM: methyltransferase domain
YP_003806279.1	COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: pca:Pcar_3056 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: periplasmic binding protein; SPTR: Q3A016 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein
YP_003806280.1	COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593:IPR017871; KEGG: sat:SYN_00216 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q2LY12 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PFAM: ABC transporter
YP_003806281.1	COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: sat:SYN_00217 ABC-type Fe3+-siderophore transport system, permease component; PFAM: transport system permease protein; SPTR: Q2LY04 ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family
YP_003806282.1	COGs: COG1720 conserved hypothetical protein; InterPro IPR001378; KEGG: dal:Dalk_5079 protein of unknown function UPF0066; PFAM: protein of unknown function UPF0066; SPTR: B8FDW9 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0066; TIGRFAM: conserved hypothetical protein TIGR00104
YP_003806283.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: ppd:Ppro_1253 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A1HNQ0 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003806284.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR009082:IPR 004358:IPR005467; KEGG: dal:Dalk_1275 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: B8F9N2 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003806285.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dat:HRM2_07150 sigma-54 dependent DNA-binding response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C0QJH6 Sigma-54 dependent DNA-binding response regulator; PFAM: Response regulator receiver domain
YP_003806286.1	KEGG: dol:Dole_2397 hypothetical protein; SPTR: A8ZVL4 Putative uncharacterized protein
YP_003806287.1	COGs: COG1102 Cytidylate kinase; KEGG: dol:Dole_2398 response regulator receiver protein; SPTR: A8ZVL5 Response regulator receiver protein
YP_003806288.1	COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR004680:IPR006037:IPR016040; KEGG: dol:Dole_2399 TrkA domain-containing protein; PFAM: TrkA-C domain protein; Citrate transporter; SPTR: A8ZVL6 TrkA-C domain protein; PFAM: TrkA-C domain; Citrate transporter
YP_003806289.1	InterPro IPR014729; KEGG: dol:Dole_2400 hypothetical protein; SPTR: A8ZVL7 Putative uncharacterized protein; PFAM: Universal stress protein family
YP_003806290.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR011006:IPR 009057:IPR003593:IPR020441; KEGG: dol:Dole_2401 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003806291.1	KEGG: dol:Dole_0574 hypothetical protein; SPTR: A8ZU72 Conserved hypothetical cytosolic protein
YP_003806292.1	KEGG: hypothetical protein; SPTR: A0E9P2 Chromosome undetermined scaffold_85, whole genome shotgun sequence
YP_003806293.1	COGs: COG1342 DNA-binding protein; InterPro IPR002852; KEGG: rru:Rru_A1194 hypothetical protein; PFAM: protein of unknown function DUF134; SPTR: Q2RV50 UPF0251 protein Rru_A1194; PFAM: Protein of unknown function DUF134
YP_003806294.1	InterPro IPR010305; KEGG: dsa:Desal_2293 protein of unknown function DUF903; PFAM: protein of unknown function DUF903; SPTR: C6BWR9 Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF903)
YP_003806295.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: dal:Dalk_2350 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: B8FAV7 thioesterase superfamily protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003806296.1	COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterProIPR003660:IPR013656:IPR003661:IPR003594:IPR 017232:IPR009082:IPR000014:IPR004358:IPR005467; KEGG: gsu:GSU0812 nitrogen regulation protein NtrY, PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; histidine kinase A domain protein; SPTR: Q74EZ7 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806297.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR011006:IPR 009057:IPR003593:IPR020441; KEGG: sat:SYN_02713 response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: Q2LRW3 Response regulator containing sigma 54 interaction domain; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003806298.1	KEGG: hypothetical protein; SPTR: A2QST1 Putative uncharacterized protein
YP_003806299.1	COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); InterPro IPR016040:IPR006367; KEGG: sfu:Sfum_1588 siroheme synthase; SPTR: A0LIM3 precorrin-2 dehydrogenase; TIGRFAM: siroheme synthase; TIGRFAM: siroheme synthase, N-terminal domain
YP_003806300.1	COGs: COG4137 ABC-type uncharacterized transport system permease component; InterPro IPR002541; KEGG: pca:Pcar_3065 cycothcome C biogenesis protein; PFAM: cycothcome C assembly protein; SPTR: Q3A007 cycothcome C biogenesis protein; PFAM: cytochrome C assembly protein
YP_003806301.1	COGs: COG0373 Glutamyl-tRNA reductase; InterProIPR015895:IPR006151:IPR015896:IPR000343:IPR 016040:IPR018214; KEGG: dal:Dalk_3439 glutamyl-tRNA reductase; PFAM: shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; SPTR: B8FLI1 Glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase
YP_003806302.1	KEGG: dol:Dole_0798 hypothetical protein; SPTR: A8ZVE7 Putative uncharacterized protein
YP_003806303.1	InterPro IPR009923; KEGG: jan:Jann_3624 hypothetical protein; PFAM: protein of unknown function DUF1458; SPTR: A4EEU5 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1458)
YP_003806304.1	COGs: COG2264 ribosomal protein L11 methylase; InterPro IPR007848; KEGG: dal:Dalk_1101 ribosomal L11 methyltransferase; PFAM: methyltransferase small; SPTR: B8F958 ribosomal L11 methyltransferase; PFAM: ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase
YP_003806305.1	COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR000581:IPR004404:IPR020558; KEGG: mja:MJ1276 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: C5U5V1 Dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase
YP_003806306.1	COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterProIPR012001:IPR012000:IPR011766:IPR012846:IPR 000399; KEGG: mtp:Mthe_0110 acetolactate synthase 3 catalytic subunit; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; SPTR: A0B5D8 Acetolactate synthase; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type
YP_003806307.1	COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR002912:IPR019455:IPR004789; KEGG: pth:PTH_0528 acetolactate synthase 3 regulatory subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; SPTR: A5D4Z3 Acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit; PFAM: Small subunit of acetolactate synthase; ACT domain; TIGRFAM: acetolactate synthase, small subunit
YP_003806308.1	COGs: COG0059 Ketol-acid reductoisomerase; InterProIPR013116:IPR000506:IPR008927:IPR016040:IPR 013023; KEGG: gme:Gmet_1262 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase; PRIAM: Ketol-acid reductoisomerase; SPTR: Q39W76 Ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase
YP_003806309.1	COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterProIPR001030:IPR015931:IPR015932:IPR004430:IPR 018136; KEGG: sth:STH2116 isopropylmalate isomerase large subunit; PFAM: aconitate hydratase domain protein; SPTR: Q67MJ2 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit
YP_003806310.1	KEGG: bra:BRADO0955  thioesterase/thiol ester dehydrase-isomerase; SPTR: A4YLU5 Putative thioesterase/thiol ester dehydrase-isomerase; PFAM: thioesterase superfamily
YP_003806311.1	COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR000573:IPR015928:IPR004431; KEGG: pau:PA14_23760 isopropylmalate isomerase small subunit; PFAM: aconitate hydratase domain protein; SPTR: Q02PT3 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit
YP_003806312.1	COGs: COG0473 isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804:IPR019818; KEGG: afu:AF0628 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: O29627 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isopropylmalate/isohomocitrate dehydrogenases
YP_003806313.1	COGs: COG3527 Alpha-acetolactate decarboxylase; InterPro IPR005128; KEGG: pth:PTH_2358 alpha-acetolactate decarboxylase; PFAM: alpha-acetolactate decarboxylase; PRIAM: Acetolactate decarboxylase; SPTR: Q1JWS4 Acetolactate decarboxylase; TIGRFAM: alpha-acetolactate decarboxylase; PFAM: Alpha-acetolactate decarboxylase; TIGRFAM: alpha-acetolactate decarboxylase
YP_003806314.1	COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR004193:IPR006047:IPR006048:IPR017853:IPR 014756:IPR006589:IPR013783:IPR013781:IPR013780:IPR006407; KEGG: tro:trd_1933 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: B9L233 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: Alpha amylase, C-terminal all-beta domain; carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase
YP_003806315.1	COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; InterProIPR004365:IPR004364:IPR016027:IPR012340:IPR 002312:IPR004522:IPR006195; KEGG: dvu:DVU0007 asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: C5TZ48 Asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase
YP_003806316.1	COGs: COG1360 flagellar motor protein; InterPro IPR006665; KEGG: rce:RC1_1008 chemotaxis MotB protein; PFAM: OmpA/MotB domain protein; SPTR: A6EY60 flagellar motor protein; PFAM: OmpA family
YP_003806317.1	COGs: COG1291 flagellar motor component; InterPro IPR002898:IPR000540; KEGG: amt:Amet_2714 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: A6TRP8 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family
YP_003806318.1	COGs: COG2945 hydrolase of the alpha/beta superfamily; KEGG: dol:Dole_3190 alpha/beta hydrolase family protein; SPTR: A9A074 Alpha/beta hydrolase family protein; PFAM: X-Pro dipeptidyl-peptidase (S15 family)
YP_003806319.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013767:IPR003661:IPR003594:IPR009082:IPR 000014:IPR004358:IPR005467; KEGG: sfu:Sfum_2495 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: A0LL72 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806320.1	COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: sfu:Sfum_0147 peptide deformylase; PFAM: formylmethionine deformylase; SPTR: A8TUC7 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: polypeptide deformylase; TIGRFAM: peptide deformylase
YP_003806321.1	COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376:IPR005793:IPR011034:IPR005794; KEGG: pth:PTH_1790 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; SPTR: B0PFT8 Putative uncharacterized protein; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase; formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase
YP_003806322.1	COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR006027:IPR001678:IPR004573; KEGG: dol:Dole_2231 sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; SPTR: A8ZUK3 Sun protein; TIGRFAM: sun protein; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB
YP_003806323.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653:IPR015424:IPR015421:IPR015422; KEGG: sus:Acid_2338 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: C5T0P3 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_003806324.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: ppf:Pput_3929 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C5T0P4 glycosyl transferase family 2; PFAM: glycosyl transferase family 2
YP_003806325.1	COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451:IPR011004:IPR018357; KEGG: rpi:Rpic_0635 hypothetical protein; PFAM: transferase hexapeptide repeat containing protein; SPTR: B2U7C4 Putative uncharacterized protein; PFAM: Bacterial transferase hexapeptide (three repeats)
YP_003806326.1	COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterProIPR001451:IPR008894:IPR011004:IPR011051:IPR 018357; KEGG: rfr:Rfer_0690 WxcM-like; PFAM: WxcM domain protein domain protein; transferase hexapeptide repeat containing protein; SPTR: C5T0P5 WxcM domain protein; PFAM: WxcM-like, C-terminal
YP_003806327.1	InterPro IPR007267; KEGG: gym:GYMC10_5809 GtrA family protein; PFAM: GtrA family protein; SPTR: C5T0P6 GtrA family protein; PFAM: GtrA-like protein
YP_003806328.1	KEGG: ppf:Pput_3927 hypothetical protein; SPTR: A5W7E1 Putative uncharacterized protein
YP_003806329.1	COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: gur:Gura_4185 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SPTR: A5G960 phosphoglycerate mutase; PFAM: phosphoglycerate mutase family; TIGRFAM: alpha-ribazole phosphatase
YP_003806330.1	InterPro IPR011467; KEGG: dal:Dalk_3698 protein of unknown function DUF1573; PFAM: protein of unknown function DUF1573; SPTR: B8FLN2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1573)
YP_003806331.1	InterPro IPR019587; KEGG: dol:Dole_0158 hypothetical protein; PFAM: polyketide cyclase/dehydrase; SPTR: A8ZSQ5 Putative uncharacterized protein; PFAM: polyketide cyclase / dehydrase and lipid transport
YP_003806332.1	COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; KEGG: dol:Dole_2797  tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase; SPTR: Q1K1V6 Thiamine biosynthesis protein; PFAM: Thiamine biosynthesis protein (ThiI)
YP_003806333.1	COGs: COG2454 conserved hypothetical protein; InterPro IPR007368; KEGG: scl:sce7378 hypothetical protein; PFAM: protein of unknown function DUF434; SPTR: A9EYI8 Uncharacterized conserved protein; PFAM: Protein of unknown function (DUF434)
YP_003806334.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR013767:IPR003594:IPR001789:IPR011006:IPR 000014:IPR001610:IPR004358:IPR005467:IPR000700; KEGG: rpd:RPD_3277 ATP-binding region, ATPase-like; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver; SPTR: Q134I8 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box
YP_003806335.1	COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056:IPR011060:IPR013785; KEGG: gyc:GYMC61_1959 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: C9RZQ3 Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase
YP_003806336.1	KEGG: lxx:Lxx09000 hypothetical protein; SPTR: A6FRA1 Putative uncharacterized protein; PFAM: VanZ like family
YP_003806337.1	COGs: COG1742 conserved hypothetical protein; InterPro IPR003844; KEGG: cja:CJA_3703 hypothetical protein; PFAM: protein of unknown function UPF0060; SPTR: B3PHW0 UPF0060 membrane protein CJA_3703; PFAM: Uncharacterised BCR, YnfA/UPF0060 family
YP_003806338.1	KEGG: mrd:Mrad2831_2771 hypothetical protein; SPTR: B9QX89 Putative uncharacterized protein
YP_003806339.1	COGs: COG1196 Chromosome segregation ATPase; KEGG: hypothetical protein; SPTR: Q4Q3D8 Putative uncharacterized protein
YP_003806340.1	KEGG: tcu:Tcur_3642 RNA polymerase, sigma-24 subunit, ECF subfamily; SPTR: D1CAK6 Putative uncharacterized protein
YP_003806341.1	InterPro IPR013177; KEGG: dat:HRM2_30640 hypothetical protein; PFAM: Protein of unknown function DUF1713; SPTR: C0QKQ7 Putative uncharacterized protein; PFAM: Mitochondrial domain of unknown function (DUF1713)
YP_003806342.1	COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258:IPR000189; KEGG: maq:Maqu_2905 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase catalytic; SPTR: A1U4R0 Lytic transglycosylase, catalytic; PFAM: Transglycosylase SLT domain
YP_003806343.1	COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845:IPR011268; KEGG: dvu:DVU2230 purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; PRIAM: Purine-nucleoside phosphorylase; SPTR: B6WVY3 Putative uncharacterized protein; TIGRFAM: inosine guanosine and xanthosine phosphorylase family; PFAM: phosphorylase superfamily; TIGRFAM: inosine guanosine and xanthosine phosphorylase family
YP_003806344.1	COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680:IPR011059; KEGG: sfu:Sfum_2961 amidohydrolase; PFAM: amidohydrolase; SPTR: A0LMI3 5-methylthioadenosine/S-adenosylhomocysteine deaminase; PFAM: Amidohydrolase family
YP_003806345.1	COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680:IPR011059; KEGG: sat:SYN_01991 chlorohydrolase/deaminase family protein; PFAM: amidohydrolase; SPTR: Q2LUH4 5-methylthioadenosine/S-adenosylhomocysteine deaminase 2; PFAM: Amidohydrolase family
YP_003806346.1	COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: sru:SRU_2696 endonuclease/exonuclease/phosphatase family protein, PFAM: endonuclease/exonuclease/phosphatase; SPTR: B4WQH8 endonuclease/exonuclease/phosphatase family; PFAM: endonuclease/Exonuclease/phosphatase family
YP_003806347.1	KEGG: dba:Dbac_2704 hypothetical protein; SPTR: C7LTL4 Putative uncharacterized protein
YP_003806348.1	KEGG: drt:Dret_1987 hypothetical protein; SPTR: C8X4P8 Putative uncharacterized protein
YP_003806349.1	COGs: COG0391 conserved hypothetical protein; InterPro IPR002882; KEGG: dma:DMR_20270 hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; SPTR: C4XRH3 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0052; TIGRFAM: conserved hypothetical protein, cofD-related
YP_003806350.1	KEGG: dma:DMR_18060 hypothetical protein; SPTR: C4XQD2 Putative uncharacterized protein
YP_003806351.1	COGs: COG0189 Glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651:IPR011761; KEGG: dba:Dbac_2700 RimK domain protein ATP-grasp; PFAM: RimK domain protein ATP-grasp; SPTR: C7LTL0 RimK domain protein ATP-grasp; PFAM: RimK-like ATP-grasp domain
YP_003806352.1	COGs: COG0704 phosphate uptake regulator; InterPro IPR008170:IPR002575:IPR011009; KEGG: dma:DMR_33380 hypothetical protein; PFAM: PhoU family protein; aminoglycoside phosphotransferase; SPTR: C4XK89 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF227); PhoU domain
YP_003806353.1	KEGG: tcx:Tcr_1766 hypothetical protein; SPTR: A6GK59 Putative uncharacterized protein
YP_003806354.1	KEGG: dma:DMR_33400 hypothetical protein; SPTR: C4XK91 Putative uncharacterized protein
YP_003806355.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_0599 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FHL6 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003806356.1	COGs: COG1735 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001559:IPR017947; KEGG: dal:Dalk_0598 aryldialkylphosphatase; PFAM: aryldialkylphosphatase; SPTR: B8FHL5 Aryldialkylphosphatase; PFAM: phosphotriesterase family
YP_003806357.1	COGs: COG0556 Helicase subunit of the DNA excision repair complex; InterProIPR006935:IPR001650:IPR001943:IPR009055:IPR 014001:IPR004807:IPR014021; KEGG: glo:Glov_3444 excinuclease ABC subunit B; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: B3E245 UvrABC system protein B; TIGRFAM: excinuclease ABC, B subunit; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit
YP_003806358.1	COGs: COG1639 signal transduction protein; InterPro IPR013976:IPR003607:IPR006675; KEGG: dal:Dalk_0653 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: B8FJT0 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG
YP_003806359.1	COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006963:IPR006656:IPR006657:IPR009010; KEGG: dol:Dole_1621 nitrate reductase; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; SPTR: A9A025 Nitrate reductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain
YP_003806360.1	COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991:IPR000792; KEGG: gme:Gmet_2133 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Q39TR2 Transcriptional regulator, MarR family; PFAM: MarR family
YP_003806361.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013656:IPR013767:IPR003661:IPR003594:IPR 001789:IPR011006:IPR009082:IPR000014:IPR001610:IPR004358:I PR005467:IPR000700; KEGG: ppd:Ppro_3150 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver; SPTR: A1ATS3 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806362.1	COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: rpd:RPD_2374 beta-lactamase-like; SPTR: Q137Y3 beta-lactamase-like; PFAM: Metallo-beta-lactamase superfamily
YP_003806363.1	InterPro IPR011006:IPR001789; KEGG: dal:Dalk_2680 response regulator receiver protein; SMART: response regulator receiver; SPTR: B8FIY1 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003806364.1	COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterProIPR001732:IPR014026:IPR014027:IPR008927:IPR 016040:IPR017476; KEGG: dal:Dalk_1698 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase; SPTR: B8FEJ1 Nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_003806365.1	COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: gbm:Gbem_1326 ROK family protein; PFAM: ROK family protein; SPTR: B5EI81 ROK family protein; PFAM: ROK family; TIGRFAM: ROK family protein ( glucokinase)
YP_003806366.1	InterProIPR011717:IPR013105:IPR019734:IPR011990:IPR 013026; KEGG: dal:Dalk_1963 hypothetical protein; PFAM: hypothetical protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide repeat; SPTR: B8FEY2 hypothetical protein; PFAM: Tetratricopeptide repeat
YP_003806367.1	KEGG: dvl:Dvul_1182 hypothetical protein; SPTR: A1VCN6 Putative uncharacterized protein
YP_003806368.1	KEGG: hba:Hbal_2364 glycosyl transferase family 39; SPTR: C6XNA0 glycosyl transferase family 39
YP_003806369.1	InterPro IPR011009:IPR000719; KEGG: dsa:Desal_2316 hypothetical protein; SPTR: C6BWU2 Putative uncharacterized protein
YP_003806370.1	InterPro IPR006016:IPR014729:IPR006015; KEGG: dba:Dbac_2062 UspA domain protein; PFAM: UspA domain protein; SPTR: C7LNS3 UspA domain protein; PFAM: Universal stress protein family
YP_003806371.1	COGs: COG3920 Signal transduction histidine kinase; InterProIPR013767:IPR013655:IPR011495:IPR003594:IPR 000014:IPR001610:IPR005467:IPR000700; KEGG: ppd:Ppro_3009 hypothetical protein; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: A1ATD6 Signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box
YP_003806372.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013655:IPR013767:IPR003661:IPR 003594:IPR011006:IPR009082:IPR000014:IPR001610:IPR004358:I PR005467:IPR000700; KEGG: sfu:Sfum_3740  PAS/PAC sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: A0LPQ8 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806373.1	KEGG: dal:Dalk_0156 hypothetical protein; SPTR: B8FMJ9 Putative uncharacterized protein
YP_003806374.1	COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325:IPR000169; KEGG: dal:Dalk_1541 cyclase family protein; PFAM: cyclase family protein; SPTR: B8FAE3 Cyclase family protein; PFAM: Putative cyclase
YP_003806375.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_0098 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: B8FKJ3 methyltransferase type 11; PFAM: methyltransferase domain
YP_003806376.1	COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: glo:Glov_0554 peptidase M48 Ste24p; PFAM: peptidase M48 Ste24p; SPTR: B3E370 peptidase M48 Ste24p; PFAM: peptidase family M48
YP_003806377.1	COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478:IPR009003:IPR001940; KEGG: dde:Dde_3776 PDZ/DHR/GLGF; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: Q30US8 PDZ/DHR/GLGF; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family
YP_003806378.1	KEGG: fps:FP1649 hypothetical protein; SPTR: A6H043 Putative uncharacterized protein
YP_003806379.1	COGs: COG0509 glycine cleavage system H protein (lipoate-binding); InterPro IPR002930:IPR011053:IPR017453:IPR003016; KEGG: ttr:Tter_1497 glycine cleavage system H protein; PFAM: glycine cleavage H-protein; SPTR: A3TKX5 glycine cleavage system protein H; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein
YP_003806380.1	COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: dol:Dole_1189 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: A8ZXN7 Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase
YP_003806381.1	COGs: COG0597 Lipoprotein signal peptidase; InterPro IPR001872; KEGG: mpt:Mpe_A3047 signal peptidase II; PFAM: peptidase A8 signal peptidase II; SPTR: A2SKB1 Lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase
YP_003806382.1	COGs: COG0060 Isoleucyl-tRNA synthetase; InterProIPR002300:IPR013155:IPR010663:IPR009080:IPR 009008:IPR014729:IPR015905:IPR002301:IPR001412; KEGG: sfu:Sfum_0122 isoleucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; zinc finger Fpg domain protein; SPTR: A0LEH3 Isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Zinc finger found in FPG and IleRS; TIGRFAM: isoleucyl-tRNA synthetase
YP_003806383.1	COGs: COG2006 conserved hypothetical protein; InterPro IPR007160:IPR001450:IPR017896:IPR017900; KEGG: gsu:GSU0494 iron-sulfur cluster-binding protein; PFAM: protein of unknown function DUF362; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1TQG7 Uncharacterized conserved protein; PFAM: 4Fe-4S binding domain; Domain of unknown function (DUF362)
YP_003806384.1	InterPro IPR018392:IPR002482; KEGG: mpt:Mpe_A2160  transmembrane protein; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; SPTR: A2SHS7 Putative transmembrane protein; PFAM: LysM domain
YP_003806385.1	COGs: COG1639 signal transduction protein; InterPro IPR013976:IPR003661:IPR003594:IPR005467; KEGG: aeh:Mlg_1873 diguanylate cyclase; PFAM: Metal-dependent hydrolase HDOD; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: Q0A7H0 Diguanylate cyclase; PFAM: HDOD domain; His Kinase A (phosphoacceptor) domain
YP_003806387.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: nth:Nther_1582 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B2A4I0 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_003806388.1	COGs: COG2606 conserved hypothetical protein; InterPro IPR007214:IPR004369; KEGG: gsu:GSU3088 YbaK/EbsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; SPTR: Q748B9 YbaK/EbsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein
YP_003806389.1	KEGG: dal:Dalk_4656 integrin-like repeat-containing protein; SPTR: B8FNQ3 Integrin-like repeat-containing protein
YP_003806390.1	KEGG: dal:Dalk_1095 hypothetical protein; SPTR: B8F952 Putative uncharacterized protein
YP_003806391.1	COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: dol:Dole_1493  6-pyruvoyl tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; SPTR: A8ZZE4 Putative uncharacterized protein; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein
YP_003806392.1	COGs: COG2046 ATP sulfurylase (sulfate adenylyltransferase); InterPro IPR002650:IPR015947:IPR014729; KEGG: abo:ABO_0730 sulfate adenylyltransferase; PFAM: ATP-sulfurylase; PRIAM: Sulfate adenylyltransferase; SPTR: B9ZMM6 Sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; TIGRFAM: ATP sulphurylase
YP_003806393.1	COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: dde:Dde_0972 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; PRIAM: phenylacetate--CoA ligase; SPTR: Q313X3 phenylacetate-CoA ligase; PFAM: AMP-binding enzyme
YP_003806394.1	KEGG: hypothetical protein; SPTR: A7RZB3 Predicted protein (Fragment)
YP_003806395.1	COGs: COG0612 Zn-dependent peptidase; InterProIPR011765:IPR007863:IPR011249:IPR011237:IPR 001431; KEGG: mxa:MXAN_1141 M16 family peptidase; PFAM: peptidase M16 domain protein; SPTR: Q1DD72 peptidase, M16 (Pitrilysin) family; PFAM: peptidase M16 inactive domain; Insulinase (peptidase family M16)
YP_003806396.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sat:SYN_02851 Zn-dependent hydrolase; SPTR: Q2LSY9 Zn-dependent hydrolase including glyoxylases; PFAM: Metallo-beta-lactamase superfamily
YP_003806397.1	KEGG: sil:SPO0655 hypothetical protein; SPTR: B4D151 Putative uncharacterized protein
YP_003806398.1	COGs: COG3375 conserved hypothetical protein; InterPro IPR000182:IPR016181; KEGG: tpe:Tpen_1785 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: B7A7E4 Putative uncharacterized protein; PFAM: acetyltransferase (GNAT) family
YP_003806399.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR011545:IPR001650:IPR005580:IPR014001:IPR 014021:IPR014014:IPR000629; KEGG: dps:DP1690 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: Q6AMK6 Probable ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase
YP_003806400.1	KEGG: hoh:Hoch_5429 TonB-dependent receptor; SPTR: C1WWS0 2-oxoglutarate dehydrogenase E2 component
YP_003806401.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891:IPR013785; KEGG: cag:Cagg_1303 pyruvate carboxyltransferase; PFAM: pyruvate carboxyltransferase; SPTR: B8G8E9 pyruvate carboxyltransferase; PFAM: HMGL-like
YP_003806402.1	COGs: COG0535 Fe-S oxidoreductase; InterProIPR007197:IPR003731:IPR006638:IPR013785:IPR 005980; KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB; PFAM: radical SAM domain protein; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C8QZK3 Nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: radical SAM superfamily; Dinitrogenase iron-molybdenum cofactor; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB
YP_003806403.1	COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510:IPR000318; KEGG: dma:DMR_17510 nitrogenase molybdenum-iron cofactor biosynthesis protein; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: C4XQ77 Nitrogenase molybdenum-iron cofactor biosynthesis protein; PFAM: Nitrogenase component 1 type Oxidoreductase
YP_003806404.1	COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510:IPR005973:IPR000318; KEGG: dba:Dbac_0841 nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; SPTR: C7LPB6 Nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifE
YP_003806405.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197:IPR003731; KEGG: dsa:Desal_0442 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM domain protein; SPTR: C6BX29 Dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: radical SAM superfamily; Dinitrogenase iron-molybdenum cofactor
YP_003806406.1	COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510:IPR005976:IPR000318; KEGG: dsa:Desal_0443 nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: C8R0M8 Nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase molybdenum-iron protein beta chain
YP_003806407.1	COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510:IPR005972:IPR010143:IPR000318; KEGG: dsa:Desal_0444 nitrogenase molybdenum-iron protein alpha chain; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: C8R0M9 Nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase molybdenum-iron protein alpha chain
YP_003806408.1	COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR011322:IPR015867:IPR017918; KEGG: dsa:Desal_0445 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: C6BX32 Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II
YP_003806409.1	COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR011322:IPR015867; KEGG: dba:Dbac_0835 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: C7LPB0 Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II
YP_003806410.1	COGs: COG1348 Nitrogenase subunit NifH (ATPase); InterPro IPR000392:IPR005977; KEGG: dba:Dbac_0834 nitrogenase iron protein; PFAM: NifH/frxC-family protein; PRIAM: Nitrogenase; SPTR: C7LPA9 Nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; TIGRFAM: nitrogenase iron protein
YP_003806411.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148:IPR006037:IPR016040; KEGG: dba:Dbac_0339 TrkA-N domain protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: C7LVC4 TrkA-N domain protein; PFAM: TrkA-N domain; TrkA-C domain
YP_003806412.1	COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: pca:Pcar_0086 TrkH family potassium uptake protein; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: Q3A8E3 Potassium uptake protein, TrkH family; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family
YP_003806413.1	COGs: COG0496 acid phosphatase; InterPro IPR002828; KEGG: sfu:Sfum_1169 stationary-phase survival protein SurE; PFAM: Survival protein SurE; SPTR: A0LHG0 5'-nucleotidase surE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE
YP_003806414.1	InterPro IPR013429; KEGG: rmu:RMDY18_05530 hypothetical protein; PFAM: regulatory protein FmdB; SPTR: C6R3Q5 Type I antifreeze protein; PFAM: Zinc ribbon domain
YP_003806415.1	KEGG: dae:Dtox_1266 protein of unknown function UPF0153; SPTR: C8W5G6 Putative uncharacterized protein; manually curated
YP_003806416.1	COGs: COG2206 HD-GYP domain; InterPro IPR006674:IPR003607; KEGG: dat:HRM2_39120 HD-GYP hydrolase domain family protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C0QBG8 HD-GYP hydrolase domain family protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG
YP_003806417.1	KEGG: dra:DR_2413 chromate transport protein; SPTR: A4TWU0 Putative uncharacterized protein
YP_003806418.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: sti:Sthe_0904 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: D1C274 glycosyl transferase group 1; PFAM: glycosyl transferases group 1
YP_003806419.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: mba:Mbar_A0373 hexosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Q46FI5 Hexosyltransferase; PFAM: glycosyl transferases group 1
YP_003806420.1	InterPro IPR013216; KEGG: mac:MA1178 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Q8TRJ7 Putative uncharacterized protein; PFAM: methyltransferase domain
YP_003806421.1	COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: mxa:MXAN_4622 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q1D3I3 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter
YP_003806422.1	COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR016040:IPR017473:IPR017475; KEGG: mxa:MXAN_2922 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Q1PWC3 Similar to capsular polysaccharide synthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
YP_003806423.1	COGs: COG1734 DnaK suppressor protein; InterPro IPR000962:IPR012784:IPR020458; KEGG: sfu:Sfum_2611 TraR/DksA family transcriptional regulator; PFAM: zinc finger DksA/TraR C4-type; SPTR: A0LLI7 Transcriptional regulator, TraR/DksA family; TIGRFAM: RNA polymerase-binding protein DksA; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: RNA polymerase-binding protein DksA
YP_003806424.1	COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: krh:KRH_05920 molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; SPTR: B2GIJ0 Molybdenum cofactor biosynthesis protein MoaC; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC
YP_003806425.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterProIPR001623:IPR001305:IPR002939:IPR008971:IPR 003095:IPR012724; KEGG: dal:Dalk_3206 chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: C4XRE3 Chaperone protein dnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ
YP_003806426.1	InterPro IPR006110:IPR003716; KEGG: sfu:Sfum_1758 DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; SPTR: A0LJ43 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit
YP_003806427.1	KEGG: fre:Franean1_6300 hypothetical protein; SPTR: A8LF02 Putative uncharacterized protein
YP_003806428.1	COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterProIPR010523:IPR004096:IPR002078:IPR002197:IPR 009057:IPR003593:IPR020441; KEGG: dal:Dalk_3884 sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; 4-vinyl reductase 4VR; Activator of aromatic catabolism; helix-turn-helix Fis-type; SMART: ATPase AAA; SPTR: B8FCF2 Sigma54 specific transcriptional regulator, Fis family; PFAM: Activator of aromatic catabolism; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; V4R domain
YP_003806429.1	KEGG: GL12930 gene product from transcript GL12930-RA; SPTR: B5DN74 GA22861
YP_003806430.1	COGs: COG1750 serine protease; InterPro IPR008269:IPR020568; KEGG: pfu:PF1438 hypothetical protein; PFAM: peptidase S16 lon domain protein; SPTR: Q8U0Z2 Putative uncharacterized protein; PFAM: Lon protease (S16) C-terminal proteolytic domain
YP_003806431.1	InterPro IPR004360; KEGG: mac:MA0108 glyoxalase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C0EBN9 Putative uncharacterized protein; PFAM: glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003806432.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873:IPR005914:IPR020845; KEGG: noc:Noc_2047 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase and ligase; SPTR: Q3J9I9 Acetoacetyl-CoA synthase; TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-binding enzyme; TIGRFAM: acetoacetyl-CoA synthase
YP_003806433.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: dol:Dole_2556 beta-lactamase domain-containing protein; SPTR: A8ZWM9 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003806434.1	COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027:IPR000103; KEGG: dal:Dalk_2354 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: B8FAW1 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_003806435.1	KEGG: kse:Ksed_04660 major facilitator superfamily transporter; SPTR: B0BI40 Putative integron gene cassette protein
YP_003806436.1	COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding; InterProIPR015375:IPR015376:IPR000086:IPR015797:IPR 020084; KEGG: scl:sce4370 NADH pyrophosphatase; PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; PRIAM: NAD(+) diphosphatase; SPTR: A9F2Z4 NADH pyrophosphatase; PFAM: NADH pyrophosphatase zinc ribbon domain; NUDIX domain
YP_003806437.1	KEGG: bpy:Bphyt_2747 thioesterase superfamily protein; SPTR: B2SZF3 thioesterase superfamily protein; PFAM: thioesterase superfamily
YP_003806438.1	KEGG: ote:Oter_1689 cell wall surface anchor family protein; SPTR: B1ZUT9 Cell wall surface anchor family protein
YP_003806439.1	KEGG: sus:Acid_7814 YVTN beta-propeller repeat-containing protein; SPTR: Q01NQ8 40-residue YVTN family beta-propeller repeat protein
YP_003806440.1	KEGG: mxa:MXAN_6434 hypothetical protein; SPTR: Q1CYG5 Putative uncharacterized protein
YP_003806441.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531:IPR010917; KEGG: wsu:WS1416 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; SPTR: Q7MRE4 HUGA; PFAM: TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain
YP_003806442.1	COGs: COG2875 precorrin-4 methylase; InterPro IPR000878:IPR014777:IPR014776; KEGG: ppd:Ppro_1250 uroporphyrin-III C/tetrapyrrole methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Q1JX26 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases
YP_003806443.1	KEGG: mmi:MMAR_5339 PE-PGRS family protein; SPTR: B2HLL1 PE-PGRS family protein
YP_003806444.1	KEGG: esi:Exig_2649 hypothetical protein; SPTR: D0GPN5 Outer membrane protein
YP_003806445.1	COGs: COG0287 prephenate dehydrogenase; InterPro IPR003099:IPR016040; KEGG: dal:Dalk_1765 prephenate dehydrogenase; PFAM: prephenate dehydrogenase; SPTR: B8FFQ7 prephenate dehydrogenase; PFAM: prephenate dehydrogenase
YP_003806446.1	COGs: COG0077 prephenate dehydratase; InterProIPR020822:IPR001086:IPR002912:IPR008242:IPR 002701:IPR018528; KEGG: pca:Pcar_1887 chorismate mutase-P and prephenate dehydratase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; SPTR: Q1K0T9 Chorismate mutase; PFAM: prephenate dehydratase; ACT domain; Chorismate mutase type II
YP_003806447.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR013785:IPR006268; KEGG: sat:SYN_01940 phospho-2-dehydro-3-deoxyheptanoate aldolase; PFAM: DAHP synthetase I/KDSA; SPTR: Q2LUE1 phospho-2-dehydro-3-deoxyheptanoate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_003806448.1	COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR001041:IPR001450:IPR006963:IPR006656:IPR 009051:IPR017896:IPR017900:IPR006655; KEGG: dds:Ddes_1544 molybdopterin oxidoreductase Fe4s4 region; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8J119 Molybdopterin oxidoreductase Fe4S4 region; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Molybdopterin oxidoreductase; 4Fe-4S binding domain; Molybdopterin oxidoreductase Fe4S4 domain
YP_003806449.1	COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterPro IPR006656:IPR006657:IPR009010; KEGG: sfu:Sfum_0031 molybdopterin oxidoreductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; SPTR: A0LE82 Molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain
YP_003806450.1	InterPro IPR007844:IPR016160; KEGG: noc:Noc_2265 hypothetical protein; PFAM: AsmA family protein; SPTR: Q3J8X3 Putative uncharacterized protein; PFAM: AsmA family
YP_003806451.1	KEGG: gsu:GSU0840 hypothetical protein; SPTR: Q74EW9 Putative uncharacterized protein
YP_003806452.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004090:IPR018212; KEGG: dba:Dbac_1917 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: C0GS91 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003806453.1	KEGG: mgi:Mflv_4017 alanine dehydrogenase; SPTR: A4TCI0 L-alanine dehydrogenase
YP_003806454.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR019575:IPR013027:IPR009051:IPR012285:IPR 016040:IPR000759:IPR001949; KEGG: dds:Ddes_1543 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SPTR: B8J118 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; manually curated; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
YP_003806455.1	COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR001041:IPR019574:IPR001450:IPR006963:IPR 006656:IPR017896:IPR017900; KEGG: sfu:Sfum_3509 formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LP28 formate dehydrogenase, subunit alpha; PFAM: Molybdopterin oxidoreductase; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; 4Fe-4S binding domain; Molybdopterin oxidoreductase Fe4S4 domain
YP_003806456.1	COGs: COG1525 Micrococcal nuclease (thermonuclease) homologs; InterPro IPR006021:IPR016071; KEGG: mpt:Mpe_B0143  nuclease; PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); SPTR: A2SMY2 Putative nuclease; PFAM: Staphylococcal nuclease homologue
YP_003806457.1	COGs: COG0127 Xanthosine triphosphate pyrophosphatase; InterPro IPR002637; KEGG: dma:DMR_43210 HAM1 protein homolog; PFAM: Ham1 family protein; SPTR: C4XQS8 Nucleoside-triphosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
YP_003806458.1	COGs: COG0689 RNase PH; InterProIPR001247:IPR015847:IPR020568:IPR002381:IPR 018336; KEGG: cko:CKO_05101 ribonuclease PH; PFAM: 3' exoribonuclease; exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: A8ARN1 ribonuclease PH; TIGRFAM: ribonuclease PH; manually curated; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
YP_003806459.1	InterPro IPR001584:IPR012337:IPR009057; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain
YP_003806460.1	KEGG: cpb:Cphamn1_2546 hypothetical protein; SPTR: B3EQE2 Putative uncharacterized protein; PFAM: Putative phosphatase
YP_003806461.1	InterPro IPR001584:IPR012337:IPR009057; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain
YP_003806462.1	COGs: COG0459 Chaperonin GroEL (HSP60 family); InterPro IPR002423:IPR001844:IPR018370; KEGG: dal:Dalk_4242 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: B8FM86 60 kDa chaperonin; TIGRFAM: chaperonin GroEL; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL
YP_003806463.1	COGs: COG0234 Co-chaperonin GroES (HSP10); InterPro IPR020818:IPR011032:IPR001476:IPR018369; KEGG: sfu:Sfum_0120 chaperonin Cpn10; PFAM: Chaperonin Cpn10; SPTR: C1SNI1 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit
YP_003806464.1	COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR007197:IPR004383; KEGG: ank:AnaeK_2229 radical SAM enzyme, Cfr family; PFAM: radical SAM domain protein; SPTR: B4UDP0 radical SAM enzyme, Cfr family; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family
YP_003806465.1	InterPro IPR000415:IPR020051; KEGG: dol:Dole_2124 hypothetical protein; PFAM: nitroreductase; SPTR: A8ZTZ5 Putative uncharacterized protein; TIGRFAM: SagB-type dehydrogenase domain; PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain
YP_003806466.1	KEGG: lbf:LBF_4045 transglycosylase; SPTR: B0STQ0 Putative soluble lytic murein transglycosylase; SLT domain
YP_003806467.1	COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300:IPR011330; KEGG: tro:trd_1935 glycosyl hydrolase, family 57; PFAM: glycoside hydrolase family 57; SPTR: B9L234 glycosyl hydrolase, family 57; PFAM: glycosyl hydrolase family 57; Domain of unknown function (DUF3536)
YP_003806468.1	COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterProIPR004300:IPR015178:IPR015179:IPR011330:IPR 011013:IPR000602; KEGG: rba:RB2160 alpha-amylase; PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1925; Domain of unknown function DUF1926; PRIAM: 4-alpha-glucanotransferase; SPTR: Q7UWA6 Alpha-amylase; PFAM: Domain of unknown function (DUF1925); glycosyl hydrolase family 57; Domain of unknown function (DUF1926)
YP_003806469.1	COGs: COG2200 FOG: EAL domain; InterPro IPR001633:IPR000644:IPR000160; KEGG: drt:Dret_0176 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: C8WZK3 Diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain; CBS domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003806470.1	KEGG: svi:Svir_36200 hypothetical protein; SPTR: C8RV23 Putative uncharacterized protein
YP_003806471.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006091:IPR006090:IPR009075:IPR009100:IPR 013764; KEGG: dal:Dalk_3085 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FBM2 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain
YP_003806472.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_3084 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FBM1 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003806473.1	InterProIPR000160:IPR001440:IPR013105:IPR006597:IPR 011717:IPR019734:IPR011990:IPR013026; KEGG: drt:Dret_2188 diguanylate cyclase and serine/threonine protein kinase with TPR repeats; PFAM: hypothetical protein; GGDEF domain containing protein; hypothetical protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_4; SMART: GGDEF domain containing protein; Tetratricopeptide repeat; SPTR: C8X4X5 Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; PFAM: GGDEF domain; Tetratricopeptide repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003806474.1	COGs: COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; InterPro IPR018319:IPR015424:IPR004534:IPR018062; KEGG: gsu:GSU3369 selenocysteine synthase; PFAM: pyridoxal phosphate-dependent transferase; PRIAM: L-seryl-tRNA(Sec) selenium transferase; SPTR: P61736 L-seryl-tRNA(Sec) selenium transferase; TIGRFAM: L-seryl-tRNA selenium transferase; PFAM: Selenocysteine synthase N terminal; L-seryl-tRNA selenium transferase; TIGRFAM: seryl-tRNA(sec) selenium transferase
YP_003806475.1	InterPro IPR000086:IPR015797:IPR020084; KEGG: rmr:Rmar_0039 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: D0MK35 NUDIX hydrolase; PFAM: NUDIX domain
YP_003806476.1	COGs: COG1406 inhibitor of MCP methylation homolog of CheC; InterPro IPR007597; KEGG: dat:HRM2_37370 CheX2; PFAM: CheC domain protein; SPTR: C0QAL2 CheX2
YP_003806477.1	InterPro IPR003425; KEGG: pmx:PERMA_1227 YGGT family protein; PFAM: protein of unknown function YGGT; SPTR: A6DA20 YGGT family protein; PFAM: YGGT family
YP_003806478.1	InterPro IPR009875; KEGG: sat:SYN_02698  cytoplasmic protein; PFAM: type IV pilus assembly PilZ; SPTR: Q2LWK0 Hypothetical cytosolic protein; PFAM: PilZ domain
YP_003806479.1	InterPro IPR019734:IPR013026; KEGG: hypothetical protein; SPTR: A0FJY8 Type I fatty acid synthase
YP_003806480.1	COGs: COG0607 rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: dat:HRM2_03660 hypothetical protein; PFAM: rhodanese domain protein; SMART: rhodanese domain protein; SPTR: C0QGL1 Putative uncharacterized protein; PFAM: rhodanese-like domain
YP_003806481.1	COGs: COG2379 Putative glycerate kinase; InterPro IPR007835; KEGG: sus:Acid_0778 glycerate 2-kinase; PFAM: MOFRL domain protein; PRIAM: hydroxypyruvate reductase; SPTR: Q02AY9 glycerate 2-kinase; PFAM: MOFRL family
YP_003806482.1	COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR003439:IPR013563:IPR003593:IPR010066:IPR 017871; KEGG: gau:GAU_0758  peptide ABC transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; SPTR: C1A6E0 Putative peptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
YP_003806483.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterProIPR003439:IPR013563:IPR002696:IPR003593:IPR 010066:IPR017871; KEGG: sro:Sros_5910 peptide ABC transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; SPTR: B5GVG5 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region
YP_003806484.1	COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127:IPR006128; KEGG: dal:Dalk_1551 periplasmic solute binding protein; PFAM: periplasmic solute binding protein; SPTR: B8FAF3 Periplasmic solute binding protein; PFAM: Periplasmic solute binding protein family
YP_003806485.1	KEGG: lsa:LSA0016 chromosome partitioning ATPase; SPTR: A2AXF8 Putative mevalonate kinase
YP_003806486.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004090; KEGG: dal:Dalk_0574 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8FHJ1 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003806487.1	KEGG: gvi:gll4127 cyanophycinase; SPTR: Q7NDV5 Cyanophycinase
YP_003806488.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR013022; KEGG: sfu:Sfum_0023 xylose isomerase domain-containing protein; PFAM: xylose isomerase domain protein TIM barrel; SPTR: A0LE74 xylose isomerase domain protein TIM barrel; PFAM: xylose isomerase-like TIM barrel
YP_003806489.1	KEGG: pcu:pc1812 hypothetical protein; SPTR: Q6MA63 Putative uncharacterized protein
YP_003806490.1	KEGG: dvl:Dvul_1412 hypothetical protein; SPTR: Q72BG1 Putative uncharacterized protein
YP_003806491.1	KEGG: dsa:Desal_2286 calcium-binding EF-hand-containing protein; SPTR: C6BWR2 Calcium-binding EF-hand-containing protein
YP_003806492.1	COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: kol:Kole_1745 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: B9R0S1 peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_003806493.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: dsa:Desal_2341 secretion protein HlyD family protein; PFAM: secretion protein HlyD family protein; SPTR: C6BX91 Secretion protein HlyD family protein
YP_003806494.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: dma:DMR_22930  ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C4XSU2 Putative ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_003806495.1	COGs: COG0842 ABC-type multidrug transport system permease component; InterPro IPR013525:IPR000412; KEGG: dma:DMR_22920  ABC transporter permease protein; PFAM: ABC transporter; SPTR: B4D6L5 ABC transporter; PFAM: ABC transporter
YP_003806496.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: similar to peroxisomal enoyl-coenzyme A hydratase-like protein; PFAM: enoyl-CoA hydratase/isomerase; SPTR: C9Y8M4 delta(3,5)-delta(2,4)-dienoyl-CoA isomerase, mitochondrial; PFAM: enoyl-CoA hydratase/isomerase family
YP_003806497.1	InterPro IPR013216; KEGG: afw:Anae109_4101 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: A7HHT3 methyltransferase type 11; PFAM: methyltransferase domain
YP_003806498.1	COGs: COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: ank:AnaeK_0029 NAD(P)H dehydrogenase (quinone); PFAM: NAD(P)H dehydrogenase (quinone); SPTR: B4UKI1 NAD(P)H dehydrogenase (Quinone); PFAM: Flavodoxin-like fold
YP_003806499.1	InterPro IPR002790; KEGG: rfr:Rfer_1542 hypothetical protein; PFAM: protein of unknown function DUF88; SPTR: Q21Y79 Putative uncharacterized protein; PFAM: Protein of unknown function DUF88
YP_003806500.1	COGs: COG0215 Cysteinyl-tRNA synthetase; InterProIPR015803:IPR015273:IPR009080:IPR014729:IPR 002308; KEGG: sfu:Sfum_1634 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: A0LIR9 Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase
YP_003806501.1	COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; InterPro IPR001228:IPR003526:IPR020555; KEGG: dau:Daud_0186 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: Q1NQ03 4-diphosphocytidyl-2C-methyl-D-erythritol synthase:MECDP-synthase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: YgbB family; Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_003806502.1	InterPro IPR005500; KEGG: dat:HRM2_21250 hypothetical protein; PFAM: protein of unknown function DUF309; SPTR: C0QDF9 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF309)
YP_003806503.1	COGs: COG0057 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR020828:IPR020829:IPR020831:IPR016040:IPR 020832:IPR006424:IPR020830; KEGG: sfu:Sfum_1468 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: A0LIA5 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I
YP_003806504.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: dde:Dde_1077 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Q313L8 methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003806505.1	COGs: COG1313 Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating protein; InterPro IPR007197:IPR016431; KEGG: glo:Glov_2082 radical SAM; PFAM: radical SAM domain protein; SPTR: B3E3H9 radical SAM; PFAM: radical SAM superfamily
YP_003806506.1	COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR013767:IPR000160:IPR001633:IPR000014:IPR 000700; KEGG: tmz:Tmz1t_3959 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; SPTR: C5S5K8 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain
YP_003806507.1	COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: dvm:DvMF_1514 diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: B8DLT6 Diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003806508.1	COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: dal:Dalk_2736 hypothetical protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: B8FKQ6 Putative uncharacterized protein; PFAM: Nickel uptake substrate-specific transmembrane region
YP_003806509.1	KEGG: dsa:Desal_0113 hypothetical protein; SPTR: C6BVH0 Putative uncharacterized protein
YP_003806510.1	COGs: COG0370 Fe2+ transport system protein B; InterProIPR002917:IPR011619:IPR011642:IPR011640:IPR 006073:IPR005225:IPR003373; KEGG: dal:Dalk_2738 ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; Ferrous iron transport B domain protein; SPTR: B8FKQ8 Ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain
YP_003806511.1	COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167:IPR008988; KEGG: dds:Ddes_0645 FeoA family protein; PFAM: FeoA family protein; SPTR: B8IYF8 FeoA family protein; PFAM: FeoA domain
YP_003806512.1	COGs: COG2217 Cation transport ATPase; InterProIPR008250:IPR005834:IPR001757:IPR000695:IPR 006416:IPR018303:IPR000150; KEGG: dde:Dde_0489 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; SPTR: Q315V6 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_003806513.1	KEGG: dde:Dde_0490 hypothetical protein; SPTR: Q315V5 Putative uncharacterized protein
YP_003806514.1	KEGG: dde:Dde_0491 hypothetical protein; SPTR: Q315V4 Putative uncharacterized protein
YP_003806515.1	KEGG: dsa:Desal_0107 hypothetical protein; SPTR: C1SFS5 Putative uncharacterized protein
YP_003806516.1	KEGG: dde:Dde_0493 hypothetical protein; SPTR: C1SFS4 Putative uncharacterized protein
YP_003806517.1	KEGG: rru:Rru_A1028 hypothetical protein; SPTR: Q2RVL6 Putative uncharacterized protein
YP_003806518.1	COGs: COG2217 Cation transport ATPase; InterProIPR008250:IPR005834:IPR001757:IPR006416:IPR 018303:IPR000150; KEGG: dde:Dde_0495 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; SPTR: Q315V0 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_003806519.1	InterPro IPR007167; KEGG: dsa:Desal_0100 FeoA family protein; PFAM: FeoA family protein; SPTR: C6BV34 FeoA family protein; PFAM: FeoA domain
YP_003806520.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004090; KEGG: dal:Dalk_0094 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8FKI9 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003806521.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092:IPR008949; KEGG: gbm:Gbem_3415 polyprenyl synthetase; PFAM: polyprenyl synthetase; SPTR: B5EBB6 polyprenyl synthetase; PFAM: polyprenyl synthetase
YP_003806522.1	InterPro IPR000305; KEGG: cyh:Cyan8802_3969 group I intron endonuclease; PFAM: excinuclease ABC C subunit domain protein; SMART: excinuclease ABC C subunit domain protein; SPTR: C7QQW2 Group I intron endonuclease; PFAM: GIY-YIG catalytic domain; TIGRFAM: group I intron endonuclease
YP_003806523.1	COGs: COG0288 carbonic anhydrase; InterPro IPR001765; KEGG: pca:Pcar_2939 carbonic anhydrase; PFAM: carbonic anhydrase; SPTR: Q3A0D3 carbonic anhydrase; PFAM: carbonic anhydrase
YP_003806524.1	COGs: COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); InterPro IPR002731:IPR008275; KEGG: adg:Adeg_1706 CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; PRIAM: benzoyl-CoA reductase; SPTR: C6PAT9 CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: BadF/BadG/BcrA/BcrD ATPase family; TIGRFAM: CoA-substrate-specific enzyme activase
YP_003806525.1	COGs: COG1775 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: afu:AF1958 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (HgdA); PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; PRIAM: benzoyl-CoA reductase; SPTR: O28321 2-hydroxyglutaryl-CoA dehydratase, subunit alpha (HgdA); PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component
YP_003806526.1	COGs: COG1775 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: dal:Dalk_0249 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; SPTR: B8F8S6 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component
YP_003806527.1	KEGG: ppg:PputGB1_3052 nonspecific acid phosphatase; SPTR: B0KGE3 Nonspecific acid phosphatase
YP_003806528.1	InterPro IPR004360; KEGG: dma:DMR_03790 hypothetical protein; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: C4XHA2 Putative uncharacterized protein; PFAM: glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_003806529.1	KEGG: sfu:Sfum_1145 hypothetical protein; SPTR: A0LHD6 Putative uncharacterized protein
YP_003806530.1	COGs: COG2181 Nitrate reductase subunit gamma; InterPro IPR003816; KEGG: drt:Dret_0235 nitrate reductase subunit gamma; PFAM: Nitrate reductase subunit gamma; SPTR: C8WZR2 Membrane-bound menaquinol oxidoreductase, cytochrome b subunit; PFAM: Nitrate reductase subunit gamma
YP_003806531.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR009051:IPR012285:IPR017896:IPR017900; KEGG: mta:Moth_1606 4Fe-4S ferredoxin, iron-sulfur binding; SPTR: Q2RI27 4Fe-4S ferredoxin, iron-sulfur binding
YP_003806532.1	InterPro IPR011031; KEGG: sfu:Sfum_1148 cycothcome C family protein; SPTR: A0LHD9 cycothcome C family protein
YP_003806533.1	COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterProIPR001450:IPR006311:IPR017909:IPR017896:IPR 017900; KEGG: dal:Dalk_0608 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FJN5 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003806534.1	COGs: COG5557 polysulphide reductase; InterPro IPR005614; KEGG: dol:Dole_0454 polysulphide reductase NrfD; PFAM: polysulphide reductase NrfD; SPTR: A8ZTK0 polysulphide reductase NrfD; PFAM: polysulphide reductase, NrfD
YP_003806535.1	COGs: COG1661 DNA-binding protein with PD1-like DNA-binding motif; InterPro IPR005175; KEGG: plt:Plut_1663 DNA-binding protein; PFAM: protein of unknown function DUF296; SPTR: Q3B2B4 DNA-binding proteins with PD1-like DNA-binding motif; PFAM: Domain of unknown function (DUF296)
YP_003806536.1	COGs: COG0588 phosphoglycerate mutase 1; InterPro IPR013078:IPR005952:IPR001345; KEGG: dde:Dde_3004 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; PRIAM: Bisphosphoglycerate mutase; SPTR: C0GUB8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase family; TIGRFAM: phosphoglycerate mutase, BPG-dependent, family 1
YP_003806537.1	COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: SORBIDRAFT_09g028950; hypothetical protein; PFAM: Bile acid:sodium symporter; SPTR: A6DUG7 Putative uncharacterized protein; PFAM: Sodium Bile acid symporter family
YP_003806538.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650:IPR001261; KEGG: mrd:Mrad2831_2432 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: B1LZ06 Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
YP_003806539.1	InterPro IPR000182:IPR016181; KEGG: bbt:BBta_5735 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: A5ENE3 Putative uncharacterized protein; PFAM: acetyltransferase (GNAT) family
YP_003806540.1	KEGG: tnp:Tnap_1048 formate--tetrahydrofolate ligase; SPTR: B1FY89 Putative uncharacterized protein
YP_003806541.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006092:IPR006091:IPR006090:IPR009100:IPR 009075:IPR013786:IPR013764:IPR006089; KEGG: dal:Dalk_2663 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FIW4 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003806542.1	InterPro IPR018588:IPR009056; KEGG: dde:Dde_1896  lipoprotein; PFAM: Dihaem cycothcome C; SPTR: Q310F3 Lipoprotein, PFAM: Dihaem cycothcome C
YP_003806543.1	COGs: COG0001 glutamate-1-semialdehyde aminotransferase; InterPro IPR005814:IPR015424:IPR015421:IPR004639; KEGG: pca:Pcar_0266 glutamate-1-semialdehyde aminotransferase; PFAM: aminotransferase class-III; SPTR: Q3A7W5 glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase
YP_003806544.1	COGs: COG1522 Transcriptional regulators; InterPro IPR011991; KEGG: dal:Dalk_4278  transcriptional regulator, AsnC family; SPTR: B8FMC0 Putative transcriptional regulator, AsnC family
YP_003806545.1	COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR002376; KEGG: sss:SSUSC84_0029 phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; SPTR: A6PR94 Putative uncharacterized protein; PFAM: formyl transferase
YP_003806546.1	COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125:IPR016193:IPR016192; KEGG: bpt:Bpet2566  zinc-binding hydrolase; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Q1NJM2 Cytidine/deoxycytidylate deaminase, zinc-binding region; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_003806547.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR018486:IPR020845; KEGG: dal:Dalk_0694 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FJX1 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003806548.1	InterPro IPR003251:IPR009078:IPR012347; KEGG: dal:Dalk_3005 rubrerythrin; PFAM: Rubrerythrin; SPTR: B8FL60 Rubrerythrin; PFAM: Rubrerythrin
YP_003806549.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004010; KEGG: pca:Pcar_0052  methyl-accepting chemotaxis protein (MCP); PFAM: chemotaxis sensory transducer; Cache domain protein; SMART: chemotaxis sensory transducer; SPTR: C1SLV7 methyl-accepting chemotaxis protein; PFAM: EAL-domain associated signalling protein domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003806550.1	COGs: COG0421 Spermidine synthase; InterPro IPR001045; KEGG: mar:MAE_08080 spermine synthase; PFAM: spermine synthase; SPTR: B0JQH1 spermine synthase; PFAM: spermine/spermidine synthase; TIGRFAM: spermidine synthase
YP_003806551.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873; KEGG: dol:Dole_1973 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A8ZT94 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003806552.1	COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: dol:Dole_1974 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily; SPTR: A8ZT95 histone deacetylase superfamily; PFAM: histone deacetylase domain
YP_003806553.1	COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807:IPR000644:IPR014743; KEGG: sfu:Sfum_2352 Cl-channel, voltage-gated family protein; PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein; SPTR: A0LKT1 Cl-channel, voltage-gated family protein; PFAM: CBS domain; Voltage gated chloride channel
YP_003806554.1	InterPro IPR001440:IPR019734:IPR011990:IPR013026; KEGG: rca:Rcas_0215 hypothetical protein; PFAM: hypothetical protein; SPTR: A7NFW7 hypothetical protein
YP_003806555.1	InterPro IPR005586; KEGG: dol:Dole_1014 ABC-type transport system auxiliary component-like protein; PFAM: protein of unknown function DUF330; SPTR: A8ZWW8 ABC-type transport system auxiliary component-like protein; PFAM: Protein of unknown function (DUF330)
YP_003806556.1	COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: dol:Dole_1015 hypothetical protein; PFAM: Mammalian cell entry related domain protein; SPTR: A8ZWW9 Mammalian cell entry related domain protein; PFAM: mce related protein
YP_003806557.1	COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: pca:Pcar_2750 ABC-type transport system, ATPase component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B9ZQV3 ABC transporter; PFAM: ABC transporter
YP_003806558.1	COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR002645:IPR003453; KEGG: dba:Dbac_0468 protein of unknown function DUF140; PFAM: protein of unknown function DUF140; Sulfate transporter/antisigma-factor antagonist STAS; SPTR: C7LVW4 Putative uncharacterized protein; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein
YP_003806559.1	KEGG: asa:ASA_4345 sensory histidine kinase CreC; SPTR: Q0UKW3 Putative uncharacterized protein
YP_003806560.1	COGs: COG1409 phosphohydrolase; InterPro IPR004843; KEGG: sml:Smlt2170  calcineurin phosphoesterase; PFAM: metallophosphoesterase; SPTR: B2FPM6 Putative calcineurin phosphoesterase; PFAM: Calcineurin-like phosphoesterase
YP_003806561.1	COGs: COG4232 thiol:disulfide interchange protein; InterPro IPR003834:IPR012336:IPR012335:IPR017936; KEGG: sfu:Sfum_2885 cycothcome C biogenesis protein, transmembrane region; PFAM: cycothcome C biogenesis protein transmembrane region; PRIAM: protein-disulfide reductase; SPTR: C0GMD4 cycothcome C biogenesis protein transmembrane region; PFAM: thioredoxin; cytochrome C biogenesis protein transmembrane region
YP_003806562.1	InterPro IPR008258:IPR018392:IPR002482; KEGG: pca:Pcar_2042 membrane-bound lytic murein transglycosylase D precursor; PFAM: Lytic transglycosylase catalytic; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; SPTR: Q3A2X4 Membrane-bound lytic murein transglycosylase D; PFAM: Transglycosylase SLT domain; LysM domain
YP_003806563.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterProIPR001789:IPR013105:IPR011717:IPR001440:IPR 011006:IPR019734:IPR011990:IPR013026:IPR005829; KEGG: hch:HCH_04305 FOG: CheY-like receiver; PFAM: response regulator receiver; hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: response regulator receiver; Tetratricopeptide repeat; SPTR: A6F3F5 CheY-like receiver protein; PFAM: Response regulator receiver domain; Tetratricopeptide repeat
YP_003806564.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterProIPR003018:IPR003661:IPR003594:IPR004358:IPR 005467; KEGG: dal:Dalk_2141 GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SPTR: Q1NPH4 Sensor protein; PFAM: GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003806565.1	COGs: COG1432 conserved hypothetical protein; InterPro IPR002790; KEGG: hmo:HM1_0800 hypothetical protein; PFAM: protein of unknown function DUF88; SPTR: B0TB28 Putative uncharacterized protein; PFAM: Protein of unknown function DUF88
YP_003806566.1	COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: dal:Dalk_3435 beta-lactamase domain protein; SPTR: B8FLH7 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003806567.1	COGs: COG0613 metal-dependent phosphoesterase (PHP family); InterPro IPR004013:IPR016195:IPR003141; KEGG: chy:CHY_2227 phosphotransferase domain-containing protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: Q3A9Z4 PHP domain protein; PFAM: PHP domain
YP_003806568.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: sat:SYN_01292 response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q2LX20 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; PFAM: Response regulator receiver domain
YP_003806569.1	COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: dal:Dalk_2384 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C8R0H6 ABC transporter; PFAM: ABC transporter
YP_003806570.1	COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: noc:Noc_2421 ABC Mn2+/Zn2+ transporter,inner membrane subunit; PFAM: ABC transporter; SPTR: C5SCP6 ABC transporter; PFAM: ABC 3 transport family
YP_003806571.1	COGs: COG0502 Biotin synthase; InterProIPR007197:IPR010722:IPR006638:IPR013785:IPR 002684; KEGG: gsu:GSU1584 biotin synthetase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q74CT7 Biotin synthase; TIGRFAM: biotin synthase; PFAM: radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase
YP_003806572.1	COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814:IPR015424:IPR015421:IPR005815; KEGG: hmo:HM1_0395 adenosylmethionine-8-amino-7-oxononanoate transaminase; PFAM: aminotransferase class-III; SPTR: A1HTZ2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase
YP_003806573.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterProIPR004839:IPR015424:IPR015421:IPR004723:IPR 001917; KEGG: gsu:GSU2629 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: Q749W3 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase
YP_003806574.1	COGs: COG0132 Dethiobiotin synthetase; InterPro IPR004472; KEGG: bbe:BBR47_54630 dethiobiotin synthetase; SPTR: A1HTZ3 Dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: dethiobiotin synthase
YP_003806575.1	COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR004772:IPR003445; KEGG: dba:Dbac_2454 potassium uptake protein, TrkH family; PFAM: cation transporter; SPTR: C7LRM5 Potassium uptake protein, TrkH family; TIGRFAM: potassium uptake protein, TrkH family; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family
YP_003806576.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148:IPR006037:IPR016040:IPR006036; KEGG: dol:Dole_3218 potassium transporter peripheral membrane component; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: A9A0A2 TrkA-N domain protein; PFAM: TrkA-N domain; TrkA-C domain
YP_003806577.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: mxa:MXAN_2921  mannosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Q1D891 Putative mannosyltransferase; PFAM: glycosyl transferases group 1
YP_003806578.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: mxa:MXAN_2920 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase group 1; SPTR: Q1D892 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferases group 1
YP_003806579.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: rrs:RoseRS_3332 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: A5UYJ0 glycosyl transferase, group 1; PFAM: glycosyl transferases group 1
YP_003806580.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: glo:Glov_2754 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: B3E7F0 glycosyl transferase family 2; PFAM: glycosyl transferase family 2
YP_003806581.1	InterPro IPR007404; KEGG: hch:HCH_06173 hypothetical protein; PFAM: membrane-bound metal-dependent hydrolase; SPTR: A0YXX1 Putative uncharacterized protein; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457)
YP_003806582.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: gbm:Gbem_3449 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: B5EBF0 glycosyl transferase group 1; PFAM: glycosyl transferases group 1
YP_003806583.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: amr:AM1_2706 NAD-dependent epimerase/dehydratase, PFAM: NAD-dependent epimerase/dehydratase; SPTR: B0C822 NAD-dependent epimerase/dehydratase, PFAM: NAD dependent epimerase/dehydratase family
YP_003806584.1	KEGG: glo:Glov_0605 hypothetical protein; SPTR: B3E3C0 Putative uncharacterized protein; PFAM: Prolipoprotein diacylglyceryl transferase
YP_003806585.1	COGs: COG0688 phosphatidylserine decarboxylase; InterPro IPR003817; KEGG: gur:Gura_1505 phosphatidylserine decarboxylase-related; PFAM: phosphatidylserine decarboxylase-related; PRIAM: phosphatidylserine decarboxylase; SPTR: A5GE49 phosphatidylserine decarboxylase-related; PFAM: phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor
YP_003806586.1	KEGG: ppd:Ppro_2684 hypothetical protein; SPTR: A1ASG7 Putative uncharacterized protein; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
YP_003806587.1	COGs: COG1775 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: dal:Dalk_3066 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; SPTR: B8FBK3 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component
YP_003806588.1	InterPro IPR001647:IPR012287:IPR009057:IPR011075; KEGG: dps:DP1699 transcription regulator; PFAM: regulatory protein TetR; SPTR: Q1JVZ2 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003806589.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: rmr:Rmar_0901 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: D0MH10 Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003806590.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: hoh:Hoch_6213 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: D0LMK0 Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_003806591.1	COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterProIPR003018:IPR003593:IPR002078:IPR009057:IPR 020441:IPR002197; KEGG: sfu:Sfum_1010 NifA subfamily transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: GAF domain protein; ATPase AAA; SPTR: C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: Nif-specific regulatory protein
YP_003806592.1	COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR006091:IPR013764:IPR004925; KEGG: cbe:Cbei_2100 vinylacetyl-CoA delta-isomerase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; PRIAM: vinylacetyl-CoA delta-isomerase; SPTR: A6LV87 vinylacetyl-CoA delta-isomerase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal
YP_003806593.1	COGs: COG0247 Fe-S oxidoreductase; InterProIPR017896:IPR012285:IPR009051:IPR004017:IPR 017900:IPR017969; KEGG: sfu:Sfum_2146 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A0LK76 Putative uncharacterized protein; PFAM: Cysteine-rich domain
YP_003806594.1	InterPro IPR013830:IPR003006; KEGG: lhk:LHK_02194 probable oxidoreductase; SPTR: B4D6B2 Putative uncharacterized protein
YP_003806595.1	COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299:IPR020726; KEGG: pdi:BDI_1486 alginate O-acetylation protein, alginate O-acetyltransferase; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: B4D6B3 Membrane bound O-acyl transferase MBOAT family protein; PFAM: MBOAT family
YP_003806596.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR000014:IPR003018:IPR003661:IPR003594:IPR 001789:IPR005467:IPR011006:IPR009082:IPR004358:IPR013656:I PR013767; KEGG: sfu:Sfum_3740  PAS/PAC sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; GAF domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; response regulator receiver; SPTR: A0LPQ8 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806597.1	COGs: COG2200 FOG: EAL domain; InterPro IPR001633; KEGG: pth:PTH_0666 signaling protein; PFAM: EAL domain protein; SMART: EAL domain protein; SPTR: A5D4I7 Hypothetical signaling protein; PFAM: EAL domain
YP_003806598.1	COGs: COG0159 Tryptophan synthase alpha chain; InterPro IPR002028:IPR013785:IPR011060; KEGG: pla:Plav_0142 tryptophan synthase, subunit alpha; PFAM: tryptophan synthase alpha chain; PRIAM: Tryptophan synthase; SPTR: A7HPD2 Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, subunit alpha; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, subunit alpha
YP_003806599.1	COGs: COG0133 Tryptophan synthase beta chain; InterPro IPR006654:IPR001926:IPR006653; KEGG: ttr:Tter_1249 tryptophan synthase, subunit beta; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; SPTR: D1CBJ2 Tryptophan synthase, subunit beta; TIGRFAM: tryptophan synthase, subunit beta; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, subunit beta
YP_003806600.1	COGs: COG0135 phosphoribosylanthranilate isomerase; InterPro IPR013785:IPR011060:IPR001240; KEGG: gme:Gmet_2492 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: Q39SQ9 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YP_003806601.1	COGs: COG0134 indole-3-glycerol phosphate synthase; InterPro IPR013785:IPR011060:IPR013798:IPR001468; KEGG: afw:Anae109_0373 indole-3-glycerol-phosphate synthase; PFAM: indole-3-glycerol phosphate synthase; PRIAM: indole-3-glycerol-phosphate synthase; SPTR: A7H792 indole-3-glycerol-phosphate synthase; PFAM: indole-3-glycerol phosphate synthase
YP_003806602.1	COGs: COG0547 anthranilate phosphoribosyltransferase; InterPro IPR005940:IPR020072:IPR000312:IPR017459; KEGG: mta:Moth_1340 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like; SPTR: C8R139 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family, a/b domain; glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase
YP_003806603.1	InterPro IPR001647:IPR012287:IPR009057; KEGG: dal:Dalk_3086 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FBM3 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003806604.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000700:IPR003660:IPR011006:IPR009082:I PR004358:IPR004010:IPR013767; KEGG: drt:Dret_0936 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; Cache domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; SPTR: C0GLG7 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Cache domain; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806605.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709:IPR001828; KEGG: geo:Geob_3442 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: B9M5M6 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region
YP_003806606.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: app:CAP2UW1_2211 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: C7RP21 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region
YP_003806607.1	KEGG: dma:DMR_44390 hypothetical protein; SPTR: C9PZP5 Putative uncharacterized protein
YP_003806608.1	COGs: COG0370 Fe2+ transport system protein B; InterProIPR005225:IPR003373:IPR006073:IPR002917:IPR 011619:IPR011642:IPR011640; KEGG: dal:Dalk_4622 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; SPTR: B8FNL9 Ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain
YP_003806609.1	COGs: COG1918 Fe2+ transport system protein A; InterPro IPR008988:IPR007167; KEGG: drt:Dret_0317 FeoA family protein; PFAM: FeoA family protein; SPTR: C8WZZ4 FeoA family protein; PFAM: FeoA domain
YP_003806610.1	COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; KEGG: dsa:Desal_2695 TRAP dicarboxylate transporter-DctP subunit; PFAM: extracellular solute-binding protein, family 7; SPTR: C6BZB2 TRAP dicarboxylate transporter-DctP subunit; PFAM: Bacterial extracellular solute-binding protein, family 7
YP_003806611.1	KEGG: dol:Dole_2002 tripartite ATP-independent periplasmic transporter DctQ; SPTR: A8ZTC3 Tripartite ATP-independent periplasmic transporter DctQ component; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component
YP_003806612.1	COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR004681:IPR010656; KEGG: dat:HRM2_35000 TRAP-type C4-dicarboxylate transport system, large permease component; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: C0Q966 TRAP-type C4-dicarboxylate transport system, large permease component; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit
YP_003806613.1	KEGG: sfu:Sfum_2838 hypothetical protein; SPTR: A0LM64 Conserved hypothetical cytosolic protein
YP_003806614.1	KEGG: hypothetical protein; SPTR: C3XWY5 Putative uncharacterized protein (Fragment)
YP_003806615.1	KEGG: 3110006E14Rik; RIKEN cDNA 3110006E14 gene ; K10582 ubiquitin-conjugating enzyme E2 Q; SPTR: A7M8L6 Major ampullate spidroin 1 (Fragment)
YP_003806616.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR013704:IPR007197; KEGG: dvu:DVU2413 radical SAM domain-containing protein; PFAM: radical SAM domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q729D8 radical SAM domain protein; manually curated; PFAM: radical SAM superfamily; radical SAM N-terminal
YP_003806617.1	KEGG: mxa:MXAN_4632  lipoprotein; SPTR: Q1D3H5 Putative lipoprotein
YP_003806618.1	COGs: COG0015 Adenylosuccinate lyase; InterProIPR004769:IPR008948:IPR000362:IPR003031:IPR 019468:IPR020557; KEGG: dal:Dalk_1188 adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; SPTR: B8F9E5 Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase
YP_003806619.1	COGs: COG1906 conserved hypothetical protein; InterPro IPR007294; KEGG: dol:Dole_1082 hypothetical protein; PFAM: protein of unknown function DUF401; SPTR: A8ZX33 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF401); TIGRFAM: converved hypothetical integral membrane protein
YP_003806620.1	KEGG: dma:DMR_30720 hypothetical protein; SPTR: C4XII7 Putative uncharacterized protein
YP_003806621.1	InterPro IPR013247; KEGG: dal:Dalk_4331 SH3 type 3 domain protein; PFAM: SH3 type 3 domain protein; SPTR: B8FMH3 SH3 type 3 domain protein; PFAM: Bacterial SH3 domain
YP_003806622.1	COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR001789:IPR003607:IPR011006:IPR006674; KEGG: tye:THEYE_A0181 response regulator; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; SPTR: C6MU13 Response regulator receiver modulated metal dependent phosphohydrolase; PFAM: HD domain; Response regulator receiver domain
YP_003806623.1	InterPro IPR018202:IPR019775; KEGG: azc:AZC_3620 hypothetical protein; SPTR: B4V1D3 Superoxide dismutase
YP_003806624.1	COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; InterPro IPR004528:IPR003329; KEGG: dol:Dole_0968 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: A8ZWH0 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase
YP_003806625.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015421:IPR015424:IPR000653; KEGG: dps:DP1941 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: C8R1K8 Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_003806626.1	COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR019822:IPR002033; KEGG: gdj:Gdia_0438 sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; SPTR: A9HLG5 Putative sec-independent protein translocase protein tatC; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC
YP_003806627.1	COGs: COG1826 Sec-independent protein secretion pathway components; InterPro IPR018448:IPR006312:IPR003998:IPR003369; KEGG: gsu:GSU0022 MttA/Hcf106 family protein; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Q74H70 MttA/Hcf106 family protein; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; twin-arginine translocation protein, TatB subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; twin arginine-targeting protein translocase TatB
YP_003806628.1	COGs: COG0322 Nuclease subunit of the excinuclease complex; InterProIPR004791:IPR000305:IPR001943:IPR001162:IPR 010994:IPR009055; KEGG: sat:SYN_01348 nuclease subunit of the excinuclease complex; PFAM: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: excinuclease ABC C subunit domain protein; SPTR: Q1NJH4 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit
YP_003806629.1	COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; InterPro IPR003779; KEGG: sml:Smlt1304  4-carboxymuconolactone decarboxylase; PFAM: carboxymuconolactone decarboxylase; SPTR: B2FTF6 Putative 4-carboxymuconolactone decarboxylase; PFAM: carboxymuconolactone decarboxylase family
YP_003806630.1	COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; InterPro IPR004463:IPR015870:IPR011334:IPR020568; KEGG: mmb:Mmol_1997 UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; SPTR: C6WYI0 UDP-3-0-acyl N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase
YP_003806631.1	COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: deb:DehaBAV1_0269 molybdenum cofactor guanylyltransferase; SPTR: A5FSG4 Molybdenum cofactor guanylyltransferase
YP_003806632.1	InterPro IPR000551:IPR009061; KEGG: sfu:Sfum_0360 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: A0LF58 Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein
YP_003806633.1	KEGG: hsm:HSM_1696 hypothetical protein; SPTR: B0UVR5 Haemophilus-specific protein, uncharacterized
YP_003806634.1	COGs: COG2199 FOG: GGDEF domain; InterProIPR000014:IPR000160:IPR000700:IPR013767:IPR 006089; KEGG: dsa:Desal_3020 diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; SPTR: Q2BH87 Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) (Fragment); TIGRFAM: diguanylate cyclase; PAS sensor protein; manually curated; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain
YP_003806635.1	COGs: COG2202 FOG: PAS/PAC domain; InterProIPR000014:IPR001610:IPR000700:IPR009082:IPR 013655:IPR013767; KEGG: dal:Dalk_3642 PAS modulated sigma54 specific transcriptional regulator, Fis family; PFAM: PAS fold domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; SPTR: B8FGV0 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806636.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753:IPR018376; KEGG: acr:Acry_1715 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: A5FZ87 enoyl-CoA hydratase; PFAM: enoyl-CoA hydratase/isomerase family
YP_003806637.1	InterPro IPR002482:IPR018392; KEGG: rmr:Rmar_0215 lytic transglycosylase catalytic; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; SPTR: D0MD11 Lytic transglycosylase catalytic; PFAM: LysM domain
YP_003806638.1	COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646:IPR006674; KEGG: chl:Chy400_2505 polynucleotide adenylyltransferase region; PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SPTR: Q1NUR4 polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomain; PFAM: HD domain; poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG
YP_003806639.1	KEGG: afw:Anae109_0448 NusB/RsmB/TIM44; SPTR: A7H7G7 NusB/RsmB/TIM44
YP_003806640.1	COGs: COG1073 Hydrolase of the alpha/beta superfamily; KEGG: pca:Pcar_2424  enzyme (3.4.-); SPTR: Q3A1U4 Putative enzyme (3.4.-); PFAM: Prolyl oligopeptidase family; Putative lysophospholipase
YP_003806641.1	KEGG: xcv:XCV0971 hypothetical protein; SPTR: Q3BX11 Putative membrane protein
YP_003806642.1	InterPro IPR010753; KEGG: dal:Dalk_0245 protein of unknown function DUF1330; PFAM: protein of unknown function DUF1330; SPTR: B8FMT7 Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function (DUF1330)
YP_003806643.1	COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR001789:IPR002545:IPR011006; KEGG: dal:Dalk_0296 response regulator receiver modulated CheW protein; PFAM: CheW domain protein; response regulator receiver; SMART: response regulator receiver; CheW domain protein; SPTR: C8QZE4 Response regulator receiver modulated CheW protein; PFAM: CheW-like domain; Response regulator receiver domain
YP_003806644.1	COGs: COG2043 conserved hypothetical protein; InterPro IPR003748; KEGG: dal:Dalk_1633 protein of unknown function DUF169; PFAM: protein of unknown function DUF169; SPTR: B8FAN5 Putative uncharacterized protein; PFAM: Uncharacterised ArCR, COG2043
YP_003806645.1	KEGG: rmr:Rmar_2607 hypothetical protein; SPTR: D0MFZ1 Putative uncharacterized protein
YP_003806646.1	KEGG: dat:HRM2_47730 hypothetical protein; SPTR: C0QHG3 Putative uncharacterized protein
YP_003806647.1	InterProIPR000014:IPR001610:IPR000700:IPR013656:IPR 013655; KEGG: dal:Dalk_1610  PAS/PAC sensor protein; PFAM: PAS fold-4 domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; SPTR: B8FAL2 Putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box
YP_003806648.1	COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterProIPR011761:IPR016040:IPR016102:IPR013650:IPR 003781; KEGG: dat:HRM2_02900 hypothetical protein; PFAM: CoA-binding domain protein; ATP-grasp domain protein; SPTR: C0QFL6 Putative uncharacterized protein; PFAM: CoA binding domain
YP_003806649.1	KEGG: bav:BAV2122 hypothetical protein; SPTR: B5GK01 Two-component system response regulator
YP_003806650.1	COGs: COG2233 xanthine/uracil permease; InterPro IPR006043; KEGG: mem:Memar_0808 xanthine/uracil/vitamin C permease; PFAM: xanthine/uracil/vitamin C permease; SPTR: A3CTP1 xanthine/uracil/vitamin C permease; PFAM: Permease family
YP_003806651.1	InterPro IPR000868; KEGG: aba:Acid345_0669 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: Q1ITX6 Isochorismatase hydrolase; PFAM: Isochorismatase family
YP_003806652.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089:IPR004090; KEGG: vap:Vapar_4189 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: C5CXU6 methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003806653.1	COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: adg:Adeg_0325 xylose isomerase domain protein TIM barrel; PFAM: xylose isomerase domain protein TIM barrel; SPTR: C9RB61 xylose isomerase domain protein TIM barrel; PFAM: xylose isomerase-like TIM barrel
YP_003806654.1	COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterProIPR017772:IPR015421:IPR015424:IPR000192:IPR 020578:IPR016454; KEGG: pca:Pcar_0050 cysteine desulfurase; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: C8QX39 Cysteine desulfurase NifS; TIGRFAM: cysteine desulfurase NifS; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS
YP_003806655.1	COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterProIPR010238:IPR002871:IPR007419:IPR001075:IPR 016217; KEGG: dvl:Dvul_2295 Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; SPTR: C8QX38 Fe-S cluster assembly protein NifU; TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: NifU-like N terminal domain; BFD-like [2Fe-2S] binding domain; NifU-like domain; TIGRFAM: Fe-S cluster assembly protein NifU
YP_003806656.1	InterPro IPR017515:IPR004360; KEGG: sfu:Sfum_0455 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: A0LFF3 methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase
YP_003806657.1	InterPro IPR001387:IPR011051:IPR010982:IPR013096; KEGG: sfu:Sfum_4068 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; cupin; SMART: helix-turn-helix domain protein; SPTR: A0LQN1 Transcriptional regulator, XRE family; PFAM: Cupin domain; Helix-turn-helix
YP_003806658.1	COGs: COG0069 glutamate synthase domain 2; InterPro IPR013785:IPR002932; KEGG: ate:Athe_2034 ferredoxin-dependent glutamate synthase; PFAM: ferredoxin-dependent glutamate synthase; SPTR: B9MLC1 Ferredoxin-dependent glutamate synthase; PFAM: Conserved region in glutamate synthase
YP_003806659.1	COGs: COG1249 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR004099:IPR016156:IPR013027:IPR000815:IPR 012999; KEGG: rxy:Rxyl_1767 mercuric reductase MerA; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: B4D639 Pyridine nucleotide-disulphide oxidoreductase dimerisation region; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_003806660.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR002550; KEGG: dps:DP2605 hypothetical protein; PFAM: protein of unknown function DUF21; CBS domain containing protein; SPTR: Q6AJZ2 Putative uncharacterized protein; PFAM: CBS domain; Domain of unknown function DUF21
YP_003806661.1	InterPro IPR000073; KEGG: rha:RHA1_ro03772 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: B5HUR7 Alpha/beta hydrolase; PFAM: alpha/beta hydrolase fold
YP_003806662.1	COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterProIPR010099:IPR016040:IPR001509:IPR013549:IPR 003006; KEGG: dal:Dalk_2593 domain of unknown function DUF1731; PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; SPTR: Q1NNH6 Putative uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777
YP_003806663.1	COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR012833; KEGG: tai:Taci_0633 anaerobic ribonucleoside-triphosphate reductase; SPTR: D1B9B6 Anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase
YP_003806664.1	KEGG: ava:Ava_3599 FAD dependent oxidoreductase; SPTR: Q3M731 FAD dependent oxidoreductase
YP_003806665.1	COGs: COG1180 pyruvate-formate lyase-activating enzyme; InterPro IPR012840:IPR007197; KEGG: pvi:Cvib_0808 anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM domain protein; SPTR: Q1PZG6 Similar to ribonucleoside triphosphate reductase activating protein NrdG; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein
YP_003806666.1	KEGG: dge:Dgeo_0876 tetratricopeptide TPR_2; SPTR: Q1J006 P-loop ATPase, LuxR family containing TPR repeats
YP_003806667.1	KEGG: dae:Dtox_4264 HNH nuclease; SPTR: C8VZI6 HNH nuclease
YP_003806668.1	COGs: COG0546 phosphatase; InterPro IPR006402:IPR006439:IPR005834; KEGG: dvm:DvMF_0135 haloacid dehalogenase domain protein hydrolase; PFAM: haloacid dehalogenase; SPTR: B8DNN9 haloacid dehalogenase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_003806669.1	COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR001453; KEGG: dps:DP1721 molybdopterin biosynthesis protein; PFAM: molybdopterin binding domain; SPTR: C8QZ64 Molybdopterin binding domain protein; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain
YP_003806670.1	COGs: COG2191 formylmethanofuran dehydrogenase subunit E; InterPro IPR003814; KEGG: aba:Acid345_0503 formylmethanofuran dehydrogenase, subunit E; PFAM: formylmethanofuran dehydrogenase subunit E region; SPTR: Q1IUE2 formylmethanofuran dehydrogenase, subunit E; PFAM: FmdE, Molybdenum formylmethanofuran dehydrogenase operon
YP_003806671.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216:IPR017441; KEGG: dol:Dole_1525 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: A8ZZS9 methyltransferase type 11; PFAM: methyltransferase domain
YP_003806672.1	KEGG: mxa:MXAN_4033 hypothetical protein; SPTR: Q1D561 Putative uncharacterized protein
YP_003806673.1	COGs: COG0398 conserved hypothetical protein; InterPro IPR015414; KEGG: dal:Dalk_0616 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; SPTR: B8FJP3 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein
YP_003806674.1	COGs: COG0205 6-phosphofructokinase; InterPro IPR000023:IPR012004; KEGG: dol:Dole_2111 diphosphate--fructose-6-phosphate 1-phosphotransferase; PFAM: phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: A8ZTY2 Diphosphate--fructose-6-phosphate 1-phosphotransferase; PFAM: phosphofructokinase
YP_003806675.1	COGs: COG1454 alcohol dehydrogenase class IV; InterPro IPR001670:IPR018211; KEGG: tai:Taci_1279 iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: Q1NLZ5 Iron-containing alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase
YP_003806676.1	COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: mhu:Mhun_1561 acetyl-CoA hydrolase/transferase; PFAM: acetyl-CoA hydrolase/transferase; SPTR: Q2FRF0 Acetyl-CoA hydrolase/transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain
YP_003806677.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR001958:IPR011701:IPR005829; KEGG: drt:Dret_2117 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C8X4C7 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003806678.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bav:BAV2236 lipopolysaccharide core biosynthesis glycosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Q2KYR6 Lipopolysaccharide core biosynthesis glycosyl transferase; PFAM: glycosyl transferase family 2
YP_003806679.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR011330:IPR002509; KEGG: sco:SCO2710 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Q9KYG2 Putative polysaccharide deacetylase; PFAM: polysaccharide deacetylase
YP_003806680.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: nam:NAMH_1720  WalR protein; PFAM: glycosyl transferase group 1; SPTR: B9L6W2 Putative WalR protein; PFAM: glycosyl transferases group 1
YP_003806681.1	COGs: COG0571 dsRNA-specific ribonuclease; InterPro IPR011907:IPR000999:IPR001159:IPR014720; KEGG: sat:SYN_00796 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; PRIAM: ribonuclease III; SMART: ribonuclease III; double-stranded RNA binding domain protein; SPTR: Q2LVR4 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial
YP_003806682.1	COGs: COG1159 GTPase; InterProIPR005225:IPR005662:IPR004044:IPR015946:IPR 009019:IPR002917; KEGG: dal:Dalk_3409 GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; SPTR: B8FLF1 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTPase of unknown function; KH domain; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain
YP_003806683.1	COGs: COG0321 Lipoate-protein ligase B; InterPro IPR000544:IPR004143; KEGG: tro:trd_0170 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: B9KXI2 Lipoate-protein ligase B; TIGRFAM: lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B
YP_003806684.1	InterPro IPR002781; KEGG: dal:Dalk_2526 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: B8FFF9 Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_003806685.1	KEGG: dde:Dde_0600 hypothetical protein; SPTR: Q315J5 Putative uncharacterized protein
YP_003806686.1	KEGG: glo:Glov_0940 hypothetical protein; SPTR: B3E5J2 Putative uncharacterized protein
YP_003806687.1	COGs: COG0075 serine-pyruvate aminotransferase/ aspartate aminotransferase; InterProIPR015421:IPR015422:IPR015424:IPR000192:IPR 020578; KEGG: tye:THEYE_A0936 soluble hydrogenase 42 kDa subunit; PFAM: aminotransferase class V; SPTR: A3EWA6 Aminotransferase, class V; PFAM: Aminotransferase class-V
YP_003806688.1	COGs: COG0111 phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR016040:IPR006139:IPR006140; KEGG: dal:Dalk_3379 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: B8FLC2 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase
YP_003806689.1	InterPro IPR014995; KEGG: sfu:Sfum_3650 hypothetical protein; PFAM: Domain of unknown function DUF1844; SPTR: A0LPG8 Conserved hypothetical cytosolic protein; PFAM: Domain of unknown function (DUF1844)
YP_003806690.1	COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterProIPR011782:IPR001478:IPR009003:IPR001940:IPR 001254; KEGG: gme:Gmet_1014 peptidase S1C, Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Q39WW8 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family
YP_003806691.1	COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; InterProIPR004424:IPR014721:IPR020568:IPR006204:IPR 013750; KEGG: gme:Gmet_2849 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; SPTR: Q39RQ7 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
YP_003806692.1	COGs: COG2088 Uncharacterized protein involved in the regulation of septum location; InterPro IPR007170; KEGG: ank:AnaeK_0129 regulatory protein SpoVG; PFAM: SpoVG family protein; SPTR: B4ULC5 Putative septation protein spoVG; PFAM: SpoVG
YP_003806693.1	COGs: COG0462 phosphoribosylpyrophosphate synthetase; InterPro IPR005946:IPR000836; KEGG: geo:Geob_1566 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: ribose-phosphate diphosphokinase; SPTR: Q1NQA1 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_003806694.1	COGs: COG1825 ribosomal protein L25 (general stress protein Ctc); InterProIPR001021:IPR020056:IPR020057:IPR011035:IPR 020055; KEGG: gau:GAU_1218 50S ribosomal protein L25; PFAM: ribosomal protein L25-like; SPTR: B9XFD6 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form
YP_003806695.1	COGs: COG0193 peptidyl-tRNA hydrolase; InterPro IPR001328:IPR018171; KEGG: sfu:Sfum_3654 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: A0LPH2 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase
YP_003806696.1	COGs: COG3808 Inorganic pyrophosphatase; InterPro IPR004131; KEGG: pca:Pcar_2001 membrane-bound proton-translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: C1SKP4 Vacuolar-type H(+)-translocating pyrophosphatase; TIGRFAM: V-type H(+)-translocating pyrophosphatase; PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase
YP_003806697.1	COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: dal:Dalk_3372 transcriptional regulator, CarD family; PFAM: transcription factor CarD; SPTR: B8FLB5 Transcriptional regulator, CarD family; PFAM: CarD-like/TRCF domain
YP_003806698.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterProIPR006225:IPR002942:IPR020103:IPR006145:IPR 006224; KEGG: acp:A2cp1_2063 pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: B8J8A5 Pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family
YP_003806699.1	COGs: COG0237 Dephospho-CoA kinase; InterPro IPR001977; KEGG: pjd:Pjdr2_1526 dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: C6CWY3 Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase
YP_003806700.1	COGs: COG1158 Transcription termination factor; InterProIPR004665:IPR011129:IPR003593:IPR016027:IPR 011112:IPR011113:IPR000194; KEGG: geo:Geob_0681 transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; Rho termination factor RNA-binding; Rho termination factor domain protein; SMART: Cold shock protein; ATPase AAA; SPTR: C6MMV4 Transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho
YP_003806701.1	COGs: COG0254 ribosomal protein L31; InterPro IPR002150; KEGG: dol:Dole_0471 ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: A8ZTL7 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; TIGRFAM: ribosomal protein L31
YP_003806702.1	COGs: COG3872 metal-dependent protein; InterPro IPR010787; KEGG: dma:DMR_31290 hypothetical membrane protein; PFAM: protein of unknown function DUF1385; SPTR: C4XIQ2 Hypothetical membrane protein; PFAM: Protein of unknown function (DUF1385)
YP_003806703.1	COGs: COG0216 Protein chain release factor A; InterPro IPR004373:IPR005139:IPR000352; KEGG: dma:DMR_31280 peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein; SPTR: C4XIQ1 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1
YP_003806704.1	COGs: COG2890 methylase of polypeptide chain release factors; InterPro IPR004556:IPR019874:IPR007848; KEGG: mxa:MXAN_4908  protein methyltransferase HemK; PFAM: methyltransferase small; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q93NC8 Protoporphyrinogen oxidase HemK; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small domain; TIGRFAM: HemK family  methylases; protein-(glutamine-N5) methyltransferase, release factor-specific
YP_003806705.1	COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; InterPro IPR005750:IPR001986:IPR013792; KEGG: gsu:GSU3102 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: Q39YP9 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_003806706.1	COGs: COG0052 ribosomal protein S2; InterPro IPR005706:IPR001865:IPR018130; KEGG: gur:Gura_3733 30S ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: A5G7W8 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type
YP_003806707.1	COGs: COG0264 Translation elongation factor Ts; InterProIPR001816:IPR014039:IPR009060:IPR000449:IPR 018101; KEGG: sfu:Sfum_1779 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; SPTR: Q1NXW3 Elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts
YP_003806708.1	COGs: COG0528 Uridylate kinase; InterPro IPR015963:IPR001048:IPR011817; KEGG: ank:AnaeK_0291 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: B8J9V8 Uridylate kinase; TIGRFAM: uridylate kinase; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase
YP_003806709.1	COGs: COG0233 ribosome recycling factor; InterPro IPR002661; KEGG: dal:Dalk_3162 ribosome recycling factor; PFAM: ribosome recycling factor; SPTR: B8FGE3 ribosome-recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; TIGRFAM: ribosome recycling factor
YP_003806710.1	COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441:IPR018520; KEGG: ade:Adeh_3585 undecaprenyl pyrophosphate synthetase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Q2IFJ1 Undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase
YP_003806711.1	COGs: COG4589 CDP-diglyceride synthetase/phosphatidate cytidylyltransferase; InterPro IPR000374; KEGG: bgl:bglu_1g12770 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: Q1NXW7 phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family
YP_003806712.1	COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821:IPR016040:IPR013512:IPR013644; KEGG: pvi:Cvib_0138 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: A4SCF3 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_003806713.1	COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR004387:IPR001478:IPR008915; KEGG: dol:Dole_0481  membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: A8ZTM7 Putative membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP
YP_003806714.1	COGs: COG1214 Inactive homolog of metal-dependent protease  molecular chaperone; InterPro IPR000905; KEGG: dps:DP1162 glycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease; SPTR: Q6AP33 Related to glycoprotein endopeptidase; PFAM: glycoprotease family
YP_003806715.1	COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: pde:Pden_1932 hypothetical protein; PFAM: protein of unknown function DUF541; SPTR: Q1N8P4 Outer membrane protein; PFAM: Protein of unknown function (DUF541)
YP_003806716.1	KEGG: dba:Dbac_0407 hypothetical protein; SPTR: C7LVQ4 Putative uncharacterized protein
YP_003806717.1	COGs: COG0688 phosphatidylserine decarboxylase; InterPro IPR004428:IPR003817; KEGG: gme:Gmet_1263 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; PRIAM: phosphatidylserine decarboxylase; SPTR: Q39W75 phosphatidylserine decarboxylase proenzyme; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein
YP_003806718.1	COGs: COG1183 phosphatidylserine synthase; InterPro IPR004533:IPR000462; KEGG: glo:Glov_2499 CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: B3E5X2 CDP-diacylglycerol/serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_003806719.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterProIPR005671:IPR000891:IPR013785:IPR013709:IPR 002034; KEGG: dal:Dalk_0565 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; SPTR: B8FHI3 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; TIGRFAM: 2-isopropylmalate synthase, bacterial type
YP_003806720.1	COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterProIPR005986:IPR016040:IPR000534:IPR012280:IPR 000319:IPR012080; KEGG: gme:Gmet_0604 aspartate semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Q39Y27 Aspartate semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)
YP_003806721.1	COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398:IPR016065:IPR002052; KEGG: scl:sce8059  methylase; PFAM: Protein of unknown function methylase SPTR: A9FHL8 Putative methylase; TIGRFAM: methyltransferase; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family
YP_003806722.1	COGs: COG0669 phosphopantetheine adenylyltransferase; InterPro IPR004821:IPR001980:IPR014729:IPR004820; KEGG: sat:SYN_00909 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Q2LTS1 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain
YP_003806723.1	COGs: COG2078 conserved hypothetical protein; InterPro IPR002733; KEGG: sat:SYN_00073  cytoplasmic protein; PFAM: AMMECR1 domain protein; SPTR: Q2LQ75 Hypothetical cytosolic protein; PFAM: AMMECR1; TIGRFAM: conserved hypothetical protein TIGR00296
YP_003806724.1	COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086:IPR015797:IPR020476:IPR020084; KEGG: gme:Gmet_0988 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: Q39WZ4 NUDIX hydrolase; PFAM: NUDIX domain
YP_003806725.1	KEGG: dal:Dalk_3826 hypothetical protein; SPTR: B8FC94 Putative uncharacterized protein
YP_003806726.1	COGs: COG2258 conserved hypothetical protein; InterPro IPR005302:IPR015808:IPR011037; KEGG: ppd:Ppro_0303 MOSC domain-containing protein; PFAM: MOSC domain containing protein; SPTR: A1AKR7 MOSC domain containing protein; PFAM: MOSC domain
YP_003806727.1	COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR012795:IPR012796:IPR014729:IPR011063; KEGG: geo:Geob_3424 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; SPTR: A1HRS0 TRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain
YP_003806728.1	COGs: COG0465 ATP-dependent Zn protease; InterProIPR005936:IPR003593:IPR011546:IPR003959:IPR 000642:IPR003960; KEGG: dma:DMR_25740 cell division protein FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; PRIAM: Microtubule-severing ATPase; SMART: ATPase AAA; SPTR: C4XU43 Cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: FtsH extracellular; peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH
YP_003806729.1	COGs: COG0294 Dihydropteroate synthase; InterPro IPR006390:IPR000489:IPR011005; KEGG: mxa:MXAN_4353 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; PRIAM: Dihydropteroate synthase; SPTR: Q1D497 Dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase
YP_003806730.1	COGs: COG1624 conserved hypothetical protein; InterPro IPR014046:IPR003390; KEGG: tye:THEYE_A0044 hypothetical protein; PFAM: protein of unknown function DUF147; SPTR: C8R143 Putative uncharacterized protein; PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: conserved hypothetical protein TIGR00159
YP_003806731.1	InterPro IPR012505; KEGG: pca:Pcar_1000 hypothetical protein; PFAM: YbbR family protein; SPTR: Q1JY24 YbbR-like; PFAM: YbbR-like protein
YP_003806732.1	COGs: COG1109 phosphomannomutase; InterProIPR006352:IPR016055:IPR005841:IPR005844:IPR 005845:IPR005846:IPR005843:IPR016066; KEGG: gbm:Gbem_2635 phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: C6MN75 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase
YP_003806733.1	COGs: COG1521 Putative transcriptional regulator protein; InterPro IPR004619; KEGG: sfu:Sfum_0549 pantothenate kinase; PFAM: Bvg accessory factor; PRIAM: Pantothenate kinase; SPTR: A0LFP6 Type III pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III
YP_003806734.1	COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: ade:Adeh_3395 peptidase S66, LD-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: Q2IF02 peptidase S66, LD-carboxypeptidase A; PFAM: LD-carboxypeptidase
YP_003806735.1	COGs: COG1680 beta-lactamase class C and other penicillin binding protein; InterPro IPR012338:IPR001466; KEGG: dol:Dole_0591 beta-lactamase; PFAM: beta-lactamase; SPTR: A8ZU89 beta-lactamase; PFAM: beta-lactamase
YP_003806736.1	COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR016040:IPR013221:IPR004101:IPR000713; KEGG: dps:DP2930 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diamino pimelate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: Q1NLI3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase
YP_003806737.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: sat:SYN_01425 outer membrane B12 receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: C0GQ96 Outer membrane insertion C-terminal signal; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003806738.1	COGs: COG1865 conserved hypothetical protein; InterPro IPR002808; KEGG: ppd:Ppro_1265 hypothetical protein; PFAM: protein of unknown function DUF105; SPTR: A1ANG6 Putative uncharacterized protein; PFAM: Adenosylcobinamide amidohydrolase
YP_003806739.1	COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: dal:Dalk_2985 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; SPTR: B8FL40 Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator
YP_003806740.1	COGs: COG3875 conserved hypothetical protein; InterPro IPR018657; KEGG: afu:AF0049 hypothetical protein; PFAM: Protein of unknown function DUF2088; SPTR: O30187 Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2088)
YP_003806741.1	COGs: COG4843 conserved hypothetical protein; KEGG: dal:Dalk_1835 hypothetical protein; SPTR: B8FFX7 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2179)
YP_003806742.1	COGs: COG1884 methylmalonyl-CoA mutase N-terminal domain/subunit; InterProIPR006159:IPR006098:IPR006158:IPR014348:IPR 016176:IPR005129:IPR006099; KEGG: dal:Dalk_2754 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; ArgK protein; PRIAM: methylmalonyl-CoA mutase; SPTR: B8FKS4 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain
YP_003806743.1	InterPro IPR001647:IPR012287:IPR009057; KEGG: dal:Dalk_2753 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FKS3 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003806744.1	KEGG: ote:Oter_2531 hypothetical protein; SPTR: B1ZT24 Putative uncharacterized protein
YP_003806745.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197:IPR017200; KEGG: sfu:Sfum_3058 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SPTR: A0LMT0 radical SAM domain protein; PFAM: radical SAM superfamily
YP_003806746.1	COGs: COG1150 Heterodisulfide reductase subunit C; InterProIPR009056:IPR017896:IPR012285:IPR009051:IPR 017900; KEGG: dal:Dalk_5066 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDV6 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Nitrate reductase subunit gamma
YP_003806747.1	COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: dal:Dalk_5067 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: B8FDV7 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich domain
YP_003806748.1	KEGG: pag:PLES_30211  protease; SPTR: Q9I1J2 Putative uncharacterized protein
YP_003806749.1	COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterProIPR000014:IPR003593:IPR002078:IPR000700:IPR 009057:IPR020441:IPR013767:IPR013656:IPR002197; KEGG: dal:Dalk_2273 PAS modulated sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; PAS fold domain protein; helix-turn-helix Fis-type; SMART: ATPase AAA; PAS domain containing protein; SPTR: B8FIH6 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806750.1	COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023:IPR012335:IPR012336; KEGG: dal:Dalk_2272 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: B8FIH5 NADH dehydrogenase (Ubiquinone) 24 kDa subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit
YP_003806751.1	COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR017896:IPR012335:IPR012336:IPR011538:IPR 019554:IPR019575:IPR001450:IPR017900:IPR019825:IPR001949; KEGG: dal:Dalk_2271 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: NADH dehydrogenase (quinone); SPTR: B8FIH4 NADH dehydrogenase (Quinone); PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; 4Fe-4S binding domain; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain
YP_003806752.1	COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterProIPR001041:IPR017896:IPR001450:IPR017900:IPR 000283; KEGG: dal:Dalk_2270 ferredoxin; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FIH3 Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain
YP_003806753.1	COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterPro IPR017896:IPR001450:IPR003813; KEGG: dal:Dalk_2269 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase subunit delta; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FIH2 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase, subunit delta
YP_003806754.1	COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR000485:IPR011991:IPR011008; KEGG: dal:Dalk_4142  transcriptional regulator, AsnC family; SMART: Transcription regulator, AsnC-type; SPTR: B8FMV6 Putative transcriptional regulator, AsnC family; PFAM: AsnC family
YP_003806755.1	InterPro IPR001387:IPR010982; KEGG: rsq:Rsph17025_1373 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: A4WSA6 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix
YP_003806756.1	COGs: COG1309 Transcriptional regulator; InterProIPR001647:IPR012287:IPR015893:IPR011075:IPR 009057:IPR013570; KEGG: dal:Dalk_3280 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YsiA domain protein; SPTR: B8FJ43 Transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family
YP_003806757.1	COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000014:IPR000160:IPR001610:IPR001633:IPR 000700:IPR013767:IPR013656:IPR013655; KEGG: pap:PSPA7_0717 hypothetical protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; PAS fold-3 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: A6UZ77 Putative uncharacterized protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain
YP_003806758.1	InterPro IPR008254; KEGG: sat:SYN_01229 flavodoxin; SPTR: Q2LW80 Flavodoxin; PFAM: NADPH-dependent FMN reductase
YP_003806759.1	KEGG: dma:DMR_26440 hypothetical membrane protein; SPTR: C4XUB3 Hypothetical membrane protein; PFAM: Protein of unknown function (DUF2975)
YP_003806760.1	COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: glo:Glov_0100 transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; SPTR: B3E9H1 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix
YP_003806761.1	InterPro IPR020080:IPR013838; KEGG: ppd:Ppro_2085 hypothetical protein; SPTR: A1AQS3 Putative uncharacterized protein
YP_003806762.1	KEGG: ppd:Ppro_2085 hypothetical protein; SPTR: A1AQS3 Putative uncharacterized protein
YP_003806763.1	COGs: COG0371 glycerol dehydrogenase; InterPro IPR001670:IPR016160:IPR018211:IPR016205; KEGG: sth:STH1267 glycerol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: C1TM17 glycerol dehydrogenase-like oxidoreductase; PFAM: Iron-containing alcohol dehydrogenase
YP_003806764.1	COGs: COG0753 catalase; InterProIPR011614:IPR020835:IPR018028:IPR010582:IPR 002226; KEGG: mbu:Mbur_0523 catalase; PFAM: catalase related subgroup; catalase domain protein; PRIAM: catalase; SPTR: Q12YH1 catalase; PFAM: catalase; catalase-related immune-responsive
YP_003806765.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: dvm:DvMF_1241 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: B8DLC9 Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family
YP_003806766.1	InterPro IPR006683:IPR012660; KEGG: pmy:Pmen_0555 hypothetical protein; PFAM: thioesterase ; thioesterase superfamily protein; SPTR: A4XPQ9 Putative uncharacterized protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1; thioesterase domain
YP_003806767.1	COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterProIPR000644:IPR000595:IPR014710:IPR018490:IPR 005105:IPR018821; KEGG: tye:THEYE_A0033  nucleotidyltransferase family; PFAM: protein of unknown function DUF294 nucleotidyltransferase ; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294,  nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein; SPTR: B5YGV7 Putative nucleotidyltransferase family; PFAM: Putative nucleotidyltransferase substrate binding domain; CBS domain; Cyclic nucleotide-binding domain; Putative nucleotidyltransferase DUF294
YP_003806768.1	COGs: COG2176 DNA polymerase III subunit alpha (gram-positive type); InterPro IPR006054:IPR006055:IPR012337:IPR013520; KEGG: cte:CT1039 DNA polymerase III, subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: Q8KDK8 DNA polymerase III, subunit epsilon; TIGRFAM: DNA polymerase III, subunit epsilon; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, subunit epsilon family
YP_003806769.1	KEGG: hmo:HM1_1627 flagellar hook-associated protein 2, SPTR: B0TE02 flagellar hook-associated protein 2
YP_003806770.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dat:HRM2_38320 AcsA3; PFAM: AMP-dependent synthetase and ligase; SPTR: C0GH76 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003806771.1	COGs: COG1472 beta-glucosidase-related glycosidase; InterPro IPR001764:IPR017853; KEGG: ank:AnaeK_4399 glycoside hydrolase family 3 domain protein; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Q1NXP1 glycoside hydrolase, family 3-like; PFAM: glycosyl hydrolase family 3 N terminal domain
YP_003806772.1	KEGG: mar:MAE_45780 magnesium protoporphyrin IX chelatase subunit D; SPTR: A8YEX0 Similar to Q4BXZ0_CROWT Magnesium chelatase
YP_003806773.1	COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/subunit epsilons (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR011004:IPR005835:IPR018357; KEGG: ank:AnaeK_3750 nucleotidyl transferase; PFAM: Nucleotidyl transferase; SPTR: B4UE03 Nucleotidyl transferase; PFAM: Nucleotidyl transferase
YP_003806774.1	COGs: COG3178 phosphotransferase related to Ser/Thr protein kinase; InterPro IPR011009:IPR002575; KEGG: dps:DP2940 hypothetical protein; PFAM: aminoglycoside phosphotransferase; SPTR: C8QX22 Aminoglycoside phosphotransferase; PFAM: phosphotransferase enzyme family
YP_003806775.1	COGs: COG1160 GTPase; InterProIPR005225:IPR016484:IPR015946:IPR006073:IPR 002917; KEGG: sfu:Sfum_1809 small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: A0LJ92 GTP-binding protein engA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain
YP_003806776.1	COGs: COG0279 phosphoheptose isomerase; InterPro IPR001347; KEGG: dde:Dde_2619 phosphoheptose isomerase; PFAM: sugar isomerase (SIS); SPTR: Q30Y31 phosphoheptose isomerase; PFAM: SIS domain; TIGRFAM: phosphoheptose isomerase
YP_003806777.1	KEGG: dal:Dalk_4350 hypothetical protein; SPTR: B8FN60 Putative uncharacterized protein
YP_003806778.1	InterPro IPR013429:IPR006058; KEGG: sfu:Sfum_3203 hypothetical protein; PFAM: regulatory protein FmdB; SPTR: Q30Y30 Putative uncharacterized protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM:  regulatory protein, FmdB family
YP_003806779.1	COGs: COG0181 porphobilinogen deaminase; InterPro IPR000860; KEGG: dvm:DvMF_0584 porphobilinogen deaminase; PFAM: porphobilinogen deaminase; SPTR: B8DKW2 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: porphobilinogen deaminase, C-terminal domain; porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase
YP_003806780.1	COGs: COG0007 uroporphyrinogen-III methylase; InterProIPR006366:IPR014777:IPR014776:IPR000878:IPR 003754:IPR003043; KEGG: sfu:Sfum_3201 uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen III synthase HEM4; SPTR: A0LN72 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases; uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase
YP_003806781.1	COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016:IPR014017:IPR000212; KEGG: dma:DMR_07030 ATP-dependent DNA helicase; PFAM: UvrD/REP helicase; SPTR: Q1NUA0 UvrD/REP helicase; PFAM: UvrD/REP helicase
YP_003806782.1	COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR001645:IPR013221:IPR004101; KEGG: sfu:Sfum_1671 FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; PRIAM: Tetrahydrofolate synthase; SPTR: A0LIV6 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase
YP_003806783.1	COGs: COG1452 Organic solvent tolerance protein OstA; InterPro IPR005653:IPR007543; KEGG: dal:Dalk_3824 organic solvent tolerance protein; PFAM: OstA family protein; Organic solvent tolerance protein; SPTR: B8FC92 Organic solvent tolerance protein; PFAM: Organic solvent tolerance protein; OstA-like protein
YP_003806784.1	COGs: COG0102 ribosomal protein L13; InterPro IPR005823:IPR005822; KEGG: hor:Hore_02460 ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: B8D0U3 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type
YP_003806785.1	COGs: COG0103 ribosomal protein S9; InterProIPR014721:IPR020568:IPR000754:IPR017441:IPR 020574; KEGG: pca:Pcar_1899 30S ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: Q3A3B7 30S ribosomal protein S9; PFAM: ribosomal protein S9/S16
YP_003806786.1	COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; InterPro IPR000706:IPR016040:IPR000534:IPR012280; KEGG: gsu:GSU2874 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: C6MUG3 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form
YP_003806787.1	COGs: COG0101 Pseudouridylate synthase; InterProIPR001406:IPR020094:IPR020095:IPR020103:IPR 020097; KEGG: dol:Dole_0466 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; PRIAM: tRNA-pseudouridine synthase I; SPTR: A8ZTL2 Pseudouridylate synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I
YP_003806788.1	KEGG: dal:Dalk_3199 hypothetical protein; SPTR: B8FGI0 Putative uncharacterized protein
YP_003806789.1	COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); InterProIPR014763:IPR003594:IPR020568:IPR013507:IPR 014790:IPR014762; KEGG: pca:Pcar_1304 DNA mismatch repair protein; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; SPTR: Q3A504 DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL C terminal dimerisation domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL
YP_003806790.1	COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022:IPR002627; KEGG: ppd:Ppro_2963 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: A1AT90 tRNA delta(2)-isopentenylpyrophosphate transferase 1; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA)
YP_003806791.1	KEGG: dol:Dole_1197 hypothetical protein; SPTR: A8ZXP5 Putative uncharacterized protein
YP_003806792.1	COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR002320:IPR006195:IPR004154:IPR018163:IPR 018158:IPR012947:IPR002314; KEGG: dde:Dde_2639 threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; Anticodon-binding domain protein; SPTR: Q30Y11 Threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: threonyl-tRNA synthetase
YP_003806793.1	COGs: COG0290 Translation initiation factor 3 (IF-3); InterPro IPR001288:IPR019814:IPR019815:IPR019813; KEGG: eba:ebA870 translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; SPTR: Q5P7X6 Translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; manually curated; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3
YP_003806794.1	InterPro IPR001706:IPR018265; KEGG: mgm:Mmc1_0365 50S ribosomal protein L35P; PFAM: ribosomal protein L35; SPTR: A6BKH0 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; TIGRFAM: ribosomal protein L35
YP_003806795.1	COGs: COG0292 ribosomal protein L20; InterPro IPR005813; KEGG: gme:Gmet_1414 50S ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: C6MWH9 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; TIGRFAM: ribosomal protein L20
YP_003806796.1	COGs: COG0016 Phenylalanyl-tRNA synthetase subunit alpha; InterProIPR004529:IPR006195:IPR010978:IPR004188:IPR 002319; KEGG: sfu:Sfum_0428 phenylalanyl-tRNA synthetase, subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; SPTR: C8QYJ1 Phenylalanyl-tRNA synthetase, subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha
YP_003806797.1	COGs: COG0072 Phenylalanyl-tRNA synthetase subunit beta; InterProIPR004532:IPR002547:IPR005121:IPR012340:IPR 020825:IPR005147:IPR016027:IPR009061:IPR005146; KEGG: sfu:Sfum_0429 phenylalanyl-tRNA synthetase, subunit beta; PFAM: B3/4 domain protein; t-RNA-binding domain protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; SPTR: A0LFC7 Phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, subunit beta; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, subunit beta, non-spirochete bacterial
YP_003806798.1	InterPro IPR000551:IPR009061; KEGG: aca:ACP_2017 transcription regulator protein; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C1F8V8 Transcription regulator protein; PFAM: MerR family regulatory protein
YP_003806799.1	COGs: COG1669 nucleotidyltransferase; InterPro IPR002934; KEGG: cyn:Cyan7425_1203 DNA polymerase beta domain protein region; PFAM: DNA polymerase beta domain protein region; SPTR: B8HMG8 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain
YP_003806800.1	InterPro IPR019410; KEGG: sfu:Sfum_0452 methyltransferase type 12; PFAM: methyltransferase-16, SPTR: C0GTM9 methyltransferase small; PFAM: Putative methyltransferase
YP_003806801.1	COGs: COG1295 membrane protein; InterPro IPR017039:IPR004664; KEGG: gme:Gmet_2779 ribonuclease BN; PFAM: ribonuclease BN; SPTR: Q39RX7 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN)
YP_003806802.1	COGs: COG1001 Adenine deaminase; InterPro IPR006679:IPR011059:IPR006680; KEGG: dma:DMR_21960 adenine deaminase; PFAM: amidohydrolase; PRIAM: Adenine deaminase; SPTR: C4XSJ0 Adenine deaminase; TIGRFAM: adenine deaminase; PFAM: Amidohydrolase family; TIGRFAM: adenine deaminase
YP_003806803.1	COGs: COG0729 Outer membrane protein; InterPro IPR010827:IPR000184; KEGG: sfu:Sfum_0758 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: A0LGA4 Surface antigen (D15); PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein
YP_003806804.1	COGs: COG2911 conserved hypothetical protein; InterPro IPR007452; KEGG: rce:RC1_3925 hypothetical protein; PFAM: protein of unknown function DUF490; SPTR: B6IY93 Putative uncharacterized protein; PFAM: Family of unknown function (DUF490)
YP_003806805.1	COGs: COG1102 Cytidylate kinase; InterPro IPR007055; KEGG: gbm:Gbem_2312 transport-associated; PFAM: transport-associated; SPTR: C6MT75 Transport-associated protein; PFAM: Putative phospholipid-binding domain
YP_003806806.1	KEGG: cpy:Cphy_3493 acyltransferase 3; SPTR: Q3HTI6 Putative acyltransferase; PFAM: Acyltransferase family
YP_003806807.1	InterPro IPR001584:IPR012337:IPR009057; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain
YP_003806808.1	COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR006405:IPR015977:IPR007229; KEGG: sen:SACE_2423 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; SPTR: A4FCE6 Nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM:  nicotinate phosphoribosyltransferase
YP_003806809.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR002078:IPR011006:IPR 009057:IPR020441:IPR002197; KEGG: dvu:DVU3381 transcriptional regulatory protein ZraR; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: Q725P3 Transcriptional regulatory protein zraR; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003806810.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dat:HRM2_30840 PhoR; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C0QKS7 Sensor protein; PFAM: Response regulator receiver domain
YP_003806811.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR005786:IPR001544:IPR018300; KEGG: bsu:BSU38550 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: C8R2U2 Branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II
YP_003806812.1	COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; InterPro IPR005251:IPR011559:IPR000649; KEGG: pth:PTH_1730 translation initiation factor 2B subunit; PFAM: initiation factor 2B related; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; SPTR: A5D1G8 methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase
YP_003806813.1	COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); InterProIPR004413:IPR003789:IPR006075:IPR006107:IPR 018027:IPR017958; KEGG: dma:DMR_31400 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; PFAM: GatB region; GatB central domain protein; Asn/Gln amidotransferase; SPTR: Q1NKQ9 Glutamyl-tRNA(Gln) amidotransferase B subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit
YP_003806814.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR011701:IPR005829; KEGG: dol:Dole_1430 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8ZZ81 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003806815.1	InterPro IPR014729:IPR006015:IPR006016; KEGG: dol:Dole_1866 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZSD3 UspA domain protein; PFAM: Universal stress protein family
YP_003806816.1	KEGG: dvm:DvMF_2890 hypothetical protein; SPTR: B8DRJ0 Putative uncharacterized protein
YP_003806817.1	COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: ate:Athe_1504 phenylacetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; PRIAM: phenylacetate--CoA ligase; SPTR: A5ZDJ1 Putative uncharacterized protein; PFAM: AMP-binding enzyme
YP_003806818.1	KEGG: dma:DMR_34840 hypothetical protein; SPTR: C4XK82 Putative uncharacterized protein
YP_003806819.1	KEGG: cdl:CDR20291_0586 hypothetical protein; SPTR: B0PCE4 Putative uncharacterized protein; PFAM: Pathogenicity locus
YP_003806820.1	COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterProIPR006200:IPR011991:IPR011056:IPR015927:IPR 006197:IPR006199:IPR019759; KEGG: dal:Dalk_2674 SOS-response transcriptional repressor, LexA; PFAM: LexA DNA-binding domain protein; peptidase S24/S26A/S26B, conserved region; SPTR: B8FIX5 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA binding domain; peptidase S24-like; TIGRFAM: SOS regulatory protein LexA
YP_003806821.1	COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: aeh:Mlg_1873 diguanylate cyclase; PFAM: Metal-dependent hydrolase HDOD; SPTR: Q0A7H0 Diguanylate cyclase; PFAM: HDOD domain
YP_003806822.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR003736:IPR006683; KEGG: dal:Dalk_1038 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: B8FK66 thioesterase superfamily protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003806823.1	COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: dba:Dbac_2275 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SPTR: C7LQF5 Dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor
YP_003806824.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_3279 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FJ42 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003806825.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR002078:IPR011006:IPR 009057; KEGG: gur:Gura_2708 two component, sigma-54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; ATPase AAA; SPTR: A5G514 Putative two component, sigma-54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Sigma-54 interaction domain
YP_003806826.1	COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000700:IPR011006:IPR009082:IPR004358:I PR013767:IPR000169; KEGG: sfu:Sfum_2401 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; SPTR: A0LKY0 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003806827.1	KEGG: drt:Dret_1754 hypothetical protein; SPTR: C8X3P1 Putative uncharacterized protein
YP_003806828.1	KEGG: dal:Dalk_4108 hypothetical protein; SPTR: B8FM60 Putative uncharacterized protein
YP_003806829.1	COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR017963:IPR017961:IPR001126; KEGG: pca:Pcar_3129 damage-inducible protein DinP; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: Q39ZU3 Damage-inducible protein DinP; manually curated; PFAM: impB/mucB/samB family C-terminal; impB/mucB/samB family
YP_003806830.1	KEGG: afw:Anae109_1784 hypothetical protein; SPTR: A7HB91 Putative uncharacterized protein
YP_003806831.1	COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR000760:IPR020583:IPR020550; KEGG: mxa:MXAN_1914 inositol-1-monophosphatase; PFAM: inositol monophosphatase; SPTR: Q1DB15 inositol-1-monophosphatase; PFAM: inositol monophosphatase family
YP_003806832.1	COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR010206:IPR002646; KEGG: dps:DP0573 polyA polymerase; PFAM: polynucleotide adenylyltransferase region; SPTR: C8QWW9 polynucleotide adenylyltransferase; TIGRFAM: poly(A) polymerase; PFAM: poly A polymerase head domain; TIGRFAM: poly(A) polymerase
YP_003806833.1	InterPro IPR017896:IPR001450:IPR017900; KEGG: dat:HRM2_45120 iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C0QF67 Iron-sulfur cluster binding protein; PFAM: 4Fe-4S binding domain
YP_003806834.1	COGs: COG2109 ATP:corrinoid adenosyltransferase; InterPro IPR003724; KEGG: etr:ETAE_1548 cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: B2Q3M2 Putative uncharacterized protein; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase
YP_003806835.1	KEGG: mpa:MAP1642 hypothetical protein; SPTR: D1C8K5 Putative uncharacterized protein
YP_003806836.1	KEGG: dal:Dalk_2588 hypothetical protein; SPTR: B8FIP0 Putative uncharacterized protein
YP_003806837.1	COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR015867:IPR011322; KEGG: nis:NIS_0493 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: Q1PX04 Strongly similar to nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II
YP_003806838.1	COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047; KEGG: csc:Csac_1344 ammonium transporter; PFAM: ammonium transporter; SPTR: A4XJ61 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter
YP_003806839.1	COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR015867:IPR011322; KEGG: sdl:Sdel_0104 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: Q1PX04 Strongly similar to nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II
YP_003806840.1	COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047; KEGG: mpd:MCP_0587 ammonium transporter; PFAM: ammonium transporter; SPTR: A4XJ61 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter
YP_003806841.1	COGs: COG0124 Histidyl-tRNA synthetase; InterProIPR015807:IPR006195:IPR004154:IPR002314:IPR 004516; KEGG: ppd:Ppro_1381 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; PRIAM: Histidine--tRNA ligase; SPTR: A1ANS7 Histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; manually curated; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase
YP_003806842.1	COGs: COG0173 Aspartyl-tRNA synthetase; InterProIPR004524:IPR006195:IPR012340:IPR016027:IPR 002312:IPR004365:IPR004364:IPR004115; KEGG: dps:DP0570 aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; SPTR: Q1NIK4 Aspartyl-tRNA synthetase bacterial/mitochondrial type; TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type
YP_003806843.1	InterPro IPR018392; KEGG: tgr:Tgr7_2244 hypothetical protein; PFAM: peptidoglycan-binding lysin domain; SPTR: C0GS09 Putative uncharacterized protein; PFAM: LysM domain
YP_003806844.1	COGs: COG4770 Acetyl/propionyl-CoA carboxylase subunit alpha; InterPro IPR000089:IPR011053:IPR001882; KEGG: hoh:Hoch_6688 biotin/lipoyl attachment domain-containing protein; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: D0LT17 Biotin/lipoyl attachment domain-containing protein; manually curated; PFAM: Biotin-requiring enzyme
YP_003806845.1	COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR011762:IPR011763:IPR000438:IPR000022; KEGG: pdi:BDI_0075 propionyl-CoA carboxylase beta chain; PFAM: carboxyl transferase; SPTR: C1SKV2 Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta); PFAM: carboxyl transferase domain
YP_003806846.1	COGs: COG1884 methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006098:IPR014348:IPR016176:IPR006099; KEGG: tex:Teth514_1855 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; PRIAM: methylmalonyl-CoA mutase; SPTR: C7IS99 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain
YP_003806847.1	COGs: COG2185 methylmalonyl-CoA mutase C-terminal domain/subunit (cobalamin-binding); InterPro IPR006159:IPR006158; KEGG: pth:PTH_1362 methylmalonyl-CoA mutase C-terminal domain-containing protein; PFAM: cobalamin B12-binding domain protein; SPTR: A5D2I7 methylmalonyl-CoA mutase, C-terminal domain/subunit; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain
YP_003806848.1	KEGG: mpt:Mpe_A0106 hypothetical protein; SPTR: A2SBX9 Putative uncharacterized protein
YP_003806849.1	COGs: COG1014 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit gamma; InterPro IPR019752:IPR002869; KEGG: dat:HRM2_33520 IorB3; PFAM: pyruvate/ketoisovalerate oxidoreductase; PRIAM: indolepyruvate ferredoxin oxidoreductase; SPTR: C0QMB0 IorB3; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, subunit beta
YP_003806850.1	COGs: COG4231 indolepyruvate ferredoxin oxidoreductase alpha and subunit betas; InterPro IPR017896:IPR011766:IPR001450:IPR017900; KEGG: dal:Dalk_2981 indolepyruvate ferredoxin oxidoreductase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: indolepyruvate ferredoxin oxidoreductase; SPTR: B8FL36 indolepyruvate ferredoxin oxidoreductase; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, subunit alpha
YP_003806851.1	COGs: COG1035 Coenzyme F420-reducing hydrogenase subunit beta; InterProIPR017896:IPR001450:IPR007516:IPR007525:IPR 017900; KEGG: dal:Dalk_2982 coenzyme F420 hydrogenase; PFAM: coenzyme F420 hydrogenase/dehydrogenase subunit beta domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: Coenzyme F420 hydrogenase; SPTR: B8FL37 Coenzyme F420 hydrogenase; PFAM: Coenzyme F420 hydrogenase/dehydrogenase, subunit beta N-term; Coenzyme F420 hydrogenase/dehydrogenase, subunit beta C terminus
YP_003806852.1	InterPro IPR003728; KEGG: scl:sce5801 hypothetical protein; PFAM: protein of unknown function DUF150; SPTR: Q1NIJ0 Putative uncharacterized protein; PFAM: Uncharacterised BCR, YhbC family COG0779
YP_003806853.1	COGs: COG0195 Transcription elongation factor; InterProIPR010213:IPR004087:IPR004088:IPR003029:IPR 013735:IPR012340:IPR015946:IPR009019:IPR016027:IPR010995:I PR018111; KEGG: dal:Dalk_4737 transcription elongation factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; K Homology, type 1, subgroup; SPTR: B8FCY4 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA
YP_003806854.1	COGs: COG2740 nucleic-acid-binding protein implicated in transcription termination; InterPro IPR007393; KEGG: hor:Hore_07830 predicted nucleic-acid-binding protein implicated in transcription termination; PFAM: protein of unknown function DUF448; SPTR: B8DN13 Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function (DUF448)
YP_003806855.1	COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR000178:IPR005225:IPR009000:IPR006847:IPR 000795:IPR004161; KEGG: dal:Dalk_4738 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; elongation factor Tu domain 2 protein; SPTR: B8FCY5 Translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2
YP_003806856.1	COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: drm:Dred_1275 hypothetical protein; PFAM: protein of unknown function DUF503; SPTR: A4J406 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF503)
YP_003806857.1	COGs: COG0858 ribosome-binding factor A; InterPro IPR000238:IPR015946; KEGG: hna:Hneap_1466 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: D0L0S5 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; TIGRFAM: ribosome-binding factor A
YP_003806858.1	COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: hmo:HM1_2316 dhh family domain protein, PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: B0THR6 Dhh family domain protein, PFAM: DHH family; DHHA1 domain
YP_003806859.1	COGs: COG0130 Pseudouridine synthase; InterPro IPR014780:IPR020103:IPR012960:IPR002501; KEGG: csa:Csal_3072 tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; DKCLD domain protein; SPTR: Q1QSZ2 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: TruB family pseudouridylate synthase (N terminal domain); DKCLD (NUC011) domain; TIGRFAM: tRNA pseudouridine 55 synthase
YP_003806860.1	COGs: COG0184 ribosomal protein S15P/S13E; InterPro IPR005290:IPR009068:IPR000589; KEGG: pca:Pcar_1560 30S ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: Q3A4A2 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle
YP_003806861.1	COGs: COG1185 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); InterProIPR012162:IPR004087:IPR004088:IPR003029:IPR 015848:IPR012340:IPR020568:IPR015847:IPR016027:IPR001247:I PR018111; KEGG: dal:Dalk_4743 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; PRIAM: polyribonucleotide nucleotidyltransferase; SMART: KH domain protein; SPTR: B8FCZ0 polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase
YP_003806862.1	COGs: COG0612 Zn-dependent peptidase; InterProIPR011237:IPR011249:IPR011765:IPR007863:IPR 001431; KEGG: gem:GM21_2975 peptidase M16 domain protein; PFAM: peptidase M16 domain protein; SPTR: C6E2P4 peptidase M16 domain protein; PFAM: peptidase M16 inactive domain; Insulinase (peptidase family M16)
YP_003806863.1	COGs: COG0756 dUTPase; InterPro IPR008181:IPR008180; KEGG: mgm:Mmc1_3419 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase; PRIAM: dUTP diphosphatase; SPTR: A0LD62 Deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)
YP_003806864.1	COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: gme:Gmet_1944 beta-lactamase-like; SPTR: C8QYE7 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003806865.1	COGs: COG0466 ATP-dependent Lon protease; InterProIPR004815:IPR003111:IPR003593:IPR020568:IPR 001984:IPR003959:IPR008269:IPR008268; KEGG: gem:GM21_0618 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; ATPase AAA; SPTR: C6E076 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La
YP_003806866.1	COGs: COG1641 conserved hypothetical protein; InterPro IPR002822; KEGG: gsu:GSU0141 hypothetical protein; PFAM: protein of unknown function DUF111; SPTR: Q74GV3 UPF0272 protein GSU0141; PFAM: Protein of unknown function DUF111; TIGRFAM: conserved hypothetical protein TIGR00299
YP_003806867.1	COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068:IPR008978; KEGG: dol:Dole_2642 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: A8ZX66 Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family
YP_003806868.1	COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068:IPR008978; KEGG: dol:Dole_2643 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: A8ZX67 Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family
YP_003806869.1	COGs: COG1503 peptide chain release factor 1 (eRF1); KEGG: rmr:Rmar_2532 peptide chain release factor 1 (eRF1)-like protein; SPTR: D0MFR9 peptide chain release factor 1 (ERF1)-like protein
YP_003806870.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR003593:IPR002078:IPR001789:IPR011006:IPR 009057:IPR020441:IPR002197; KEGG: dal:Dalk_0661 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; SPTR: B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003806871.1	InterProIPR019734:IPR013026:IPR011990:IPR001440:IPR 013105; KEGG: dvm:DvMF_1325 hypothetical protein; PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: B8DLL2 hypothetical protein; TIGRFAM: outer membrane assembly lipoprotein YfiO
YP_003806872.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR002078:IPR011006:IPR 009057:IPR020441:IPR002197; KEGG: dal:Dalk_0663 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: Q1NVH0 Response regulator receiver; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003806873.1	COGs: COG1815 flagellar basal body protein; InterPro IPR006300; KEGG: gme:Gmet_3115 flagellar basal-body rod protein FlgB; SPTR: Q39QZ5 flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB
YP_003806874.1	COGs: COG1558 flagellar basal body rod protein; InterPro IPR001444:IPR010930:IPR006299; KEGG: mgm:Mmc1_0267 flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: C7ILJ6 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC
YP_003806875.1	COGs: COG1677 flagellar hook-basal body protein; InterPro IPR001624; KEGG: gem:GM21_3923 flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; SPTR: C6MM83 flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE
YP_003806876.1	COGs: COG1766 flagellar biosynthesis/type III secretory pathway lipoprotein; InterPro IPR000067:IPR006182:IPR013556; KEGG: dvl:Dvul_2668 flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; flagellar M-ring domain protein; SPTR: Q1NVG6 flagellar FliF M-ring protein; TIGRFAM: flagellar M-ring protein FliF; PFAM: Secretory protein of YscJ/FliF family; flagellar M-ring protein C-terminal; TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)
YP_003806877.1	COGs: COG1536 flagellar motor switch protein; InterPro IPR000090:IPR011002; KEGG: dba:Dbac_3030 flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; SPTR: C0GRQ1 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG
YP_003806878.1	COGs: COG1317 flagellar biosynthesis/type III secretory pathway protein; KEGG: dal:Dalk_0669 flagellar assembly protein FliH; SPTR: B8FJU6 flagellar assembly protein FliH; PFAM: flagellar assembly protein FliH
YP_003806879.1	COGs: COG1157 flagellar biosynthesis/type III secretory pathway ATPase; InterProIPR004100:IPR000194:IPR005714:IPR020005:IPR 003593; KEGG: dma:DMR_45080 flagellum-specific ATP synthase; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA; SPTR: Q1NVG3 ATPase FliI/YscN; TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; flagellar protein export ATPase FliI
YP_003806880.1	InterPro IPR012823; KEGG: gem:GM21_3918 flagellar export protein FliJ; SPTR: C6E8E4 flagellar export protein FliJ; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; TIGRFAM: flagellar export protein FliJ
YP_003806881.1	InterPro IPR006668; KEGG: mag:amb3500 FlaA locus 229 kDa protein; PFAM: MgtE intracellular region; SPTR: Q2W1H1 FlaA locus 229 kDa protein; PFAM: MgtE intracellular N domain
YP_003806882.1	COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR009010:IPR006963:IPR006656:IPR006657; KEGG: dal:Dalk_0693 molydopterin dinucleotide-binding region; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; SPTR: B8FJX0 Molydopterin dinucleotide-binding region; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain
YP_003806883.1	COGs: COG3576 flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase; InterPro IPR009002:IPR011576; KEGG: sat:SYN_02719 flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Q2LRW1 Flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase
YP_003806884.1	COGs: COG4887 Uncharacterized metal-binding protein; InterPro IPR014997; KEGG: dal:Dalk_4328 protein of unknown function DUF1847; PFAM: Protein of unknown function DUF1847; SPTR: B8FMH0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1847)
YP_003806885.1	KEGG: dba:Dbac_0543 hypothetical protein; SPTR: C7LWH5 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3124)
YP_003806886.1	COGs: COG0266 formamidopyrimidine-DNA glycosylase; InterProIPR012319:IPR010979:IPR015886:IPR010663:IPR 015887:IPR000214:IPR000191; KEGG: sti:Sthe_0785 formamidopyrimidine-DNA glycosylase; PFAM: formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; zinc finger Fpg domain protein; PRIAM: DNA-formamidopyrimidine glycosylase; SPTR: D1C1V5 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: formamidopyrimidine-DNA glycosylase H2TH domain; formamidopyrimidine-DNA glycosylase N-terminal domain; Zinc finger found in FPG and IleRS; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg)
YP_003806887.1	KEGG: fno:Fnod_1360 hypothetical protein; SPTR: A7HMS4 Putative uncharacterized protein
YP_003806888.1	InterPro IPR003018; KEGG: sfu:Sfum_1918 hypothetical protein; PFAM: GAF domain protein; SMART: GAF domain protein; SPTR: A0LJK1 Putative uncharacterized protein; PFAM: GAF domain
YP_003806889.1	COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: sfu:Sfum_1917 rod shape-determining protein MreB; PFAM: cell shape determining protein MreB/Mrl; SPTR: A0LJK0 Rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family
YP_003806890.1	KEGG: dat:HRM2_18580 hypothetical protein; SPTR: C0QBU8 Putative uncharacterized protein
YP_003806891.1	KEGG: hoh:Hoch_4871 hypothetical protein; SPTR: A6G4G1 Putative uncharacterized protein
YP_003806892.1	COGs: COG1872 conserved hypothetical protein; InterPro IPR003746; KEGG: dae:Dtox_1088 protein of unknown function DUF167; PFAM: protein of unknown function DUF167; SPTR: C8W4A6 Putative uncharacterized protein; PFAM: Uncharacterised ACR, YggU family COG1872; TIGRFAM: conserved hypothetical protein TIGR00251
YP_003806893.1	InterPro IPR007793:IPR019933; KEGG: dsa:Desal_2401 DivIVA family protein; PFAM: DivIVA family protein; SPTR: C0GMA7 DivIVA family protein; TIGRFAM: DivIVA domain; PFAM: DivIVA protein; TIGRFAM: DivIVA domain
YP_003806894.1	InterPro IPR015797:IPR000086; KEGG: rde:RD1_0410 hydrolase, PFAM: NUDIX hydrolase; SPTR: Q16D17 Hydrolase, PFAM: NUDIX domain
YP_003806895.1	COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: bvu:BVU_2240  hydrolase; SPTR: C6Z5F9 Metal-dependent hydrolase; PFAM: Metallo-beta-lactamase superfamily
YP_003806896.1	KEGG: nfa:nfa15900 hypothetical protein; SPTR: Q5YZF5 Putative uncharacterized protein
YP_003806897.1	KEGG: afu:AF0367 oxalate/formate antiporter (OxlT-2); SPTR: O29880 Oxalate/formate antiporter (OxlT-2)
YP_003806898.1	COGs: COG3926 Putative secretion activating protein; InterPro IPR008565:IPR018537; KEGG: pde:Pden_4087 hypothetical protein; PFAM: peptidoglycan binding domain; protein of unknown function DUF847; SPTR: A1B9F9 Putative uncharacterized protein; PFAM: Predicted peptidoglycan domain; Predicted lysozyme (DUF847)
YP_003806899.1	KEGG: chu:CHU_2908 ribonucleoprotein-like; SPTR: Q11R14 Putative uncharacterized protein
YP_003806900.1	COGs: COG0499 S-adenosylhomocysteine hydrolase; InterPro IPR016040:IPR000043:IPR015878:IPR020082; KEGG: dal:Dalk_2505 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; PRIAM: Adenosylhomocysteinase; SPTR: B8FFD8 Adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase
YP_003806901.1	COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: dal:Dalk_3253 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: B8FJ16 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase
YP_003806902.1	COGs: COG0853 Aspartate 1-decarboxylase; InterPro IPR009010:IPR003190; KEGG: drm:Dred_1790 aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: A4J5G2 L-aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase
YP_003806903.1	COGs: COG0414 Panthothenate synthetase; InterPro IPR003721:IPR014729; KEGG: sat:SYN_00420 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Q2LSQ5 Pantothenate synthetase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase
YP_003806904.1	COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR001737:IPR020596:IPR011530:IPR020598; KEGG: dal:Dalk_3122 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase-like; SPTR: B8FBQ9 Dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase
YP_003806905.1	COGs: COG0533 Metal-dependent protease with possible chaperone activity; InterPro IPR017861:IPR000905; KEGG: hoh:Hoch_6887 metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: D0LVN2 Metalloendopeptidase, glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: glycoprotease family; TIGRFAM: metalloendopeptidase, , glycoprotease family
YP_003806906.1	COGs: COG0158 Fructose-1 6-bisphosphatase; InterPro IPR000146:IPR020548; KEGG: dvm:DvMF_0404 fructose-1,6-bisphosphatase; PFAM: inositol phosphatase/fructose-16-bisphosphatase; SPTR: C0GQU0 inositol phosphatase/fructose-16-bisphosphatase; PFAM: Fructose-1-6-bisphosphatase
YP_003806907.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterProIPR013709:IPR000891:IPR002034:IPR013785:IPR 005675; KEGG: sfu:Sfum_2174  alpha-isopropylmalate/homocitrate synthase family transferase; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; SPTR: A0LKA4 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein
YP_003806908.1	COGs: COG0527 Aspartokinase; InterProIPR001057:IPR001048:IPR002912:IPR018042:IPR 001341:IPR005260; KEGG: pca:Pcar_1006 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; SPTR: Q3A5V0 Aspartokinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase
YP_003806909.1	COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: sat:SYN_02780 ATP/GTP hydrolase; PFAM: protein of unknown function UPF0079; SPTR: Q2LTJ6 ATP/GTP hydrolase; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: conserved hypothetical nucleotide-binding protein
YP_003806910.1	COGs: COG0063 sugar kinase; InterPro IPR004443:IPR000631:IPR017953; KEGG: dol:Dole_0775 carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; SPTR: A8ZVC4 carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: carbohydrate kinase; YjeF-related protein N-terminus; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region
YP_003806911.1	COGs: COG0736 phosphopantetheinyl transferase (holo-ACP synthase); InterPro IPR008278:IPR001484:IPR004568:IPR002582; KEGG: plu:plu3336 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: Q7N1X9 Holo-[acyl-carrier-protein] synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-[acyl-carrier-protein] synthase
YP_003806912.1	COGs: COG0854 pyridoxal phosphate biosynthesis protein; InterPro IPR004569:IPR013785; KEGG: ank:AnaeK_2367 pyridoxine 5'-phosphate synthase; PFAM: pyridoxal phosphate biosynthetic protein PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: B8JBG6 pyridoxal phosphate biosynthetic protein PdxJ; TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase
YP_003806913.1	COGs: COG0319 metal-dependent hydrolase; InterPro IPR002036:IPR020549; KEGG: pca:Pcar_1233 hypothetical protein; PFAM: protein of unknown function UPF0054; SPTR: Q1K125 Putative uncharacterized protein; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: conserved hypothetical protein TIGR00043
YP_003806914.1	COGs: COG1480 membrane-associated HD superfamily hydrolase; InterPro IPR011621:IPR006674:IPR006675:IPR003607; KEGG: dol:Dole_0778 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; SMART: metal-dependent phosphohydrolase HD region; SPTR: A8ZVC7 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); uncharacterized domain HDIG
YP_003806915.1	COGs: COG1702 phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: dal:Dalk_3324 PhoH family protein; PFAM: PhoH family protein; SPTR: B8FJ86 PhoH family protein; PFAM: PhoH-like protein
YP_003806916.1	COGs: COG1286 membrane protein required for colicin V production; InterPro IPR003825; KEGG: dal:Dalk_3649 colicin V production protein; PFAM: Colicin V production protein; SPTR: B8FGV7 Colicin V production protein; PFAM: Colicin V production protein
YP_003806917.1	COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR004518:IPR011551; KEGG: scl:sce4803 hypothetical protein; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: A9FF91 Putative uncharacterized protein mazG; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein
YP_003806918.1	InterPro IPR002322; KEGG: dat:HRM2_40490 hypothetical protein; SPTR: C0QC90 Putative uncharacterized protein; PFAM: class III cytochrome C family
YP_003806919.1	InterPro IPR001450:IPR017900:IPR017896; KEGG: dba:Dbac_0275 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C7LUW8 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain
YP_003806920.1	InterProIPR001440:IPR011717:IPR011990:IPR019734:IPR 013026; KEGG: mta:Moth_1598 hypothetical protein; PFAM: hypothetical protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide repeat; SPTR: Q2RI35 Putative uncharacterized protein
YP_003806921.1	InterPro IPR014793:IPR011991; KEGG: dba:Dbac_0281 dissimilatory sulfite reductase D; PFAM: Dissimilatory sulfite reductase D; SPTR: C7LUX4 Dissimilatory sulfite reductase D; PFAM: Dissimilatory sulfite reductase D (DsrD)
YP_003806922.1	COGs: COG1797 Cobyrinic acid a c-diamide synthase; InterPro IPR002586:IPR011698:IPR017929:IPR004484; KEGG: dal:Dalk_4298 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase; SPTR: B8FME0 Cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase
YP_003806923.1	COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and subunit betas; InterProIPR005117:IPR006067:IPR001450:IPR017900:IPR 017896:IPR011808; KEGG: sfu:Sfum_4043 sulfite reductase, dissimilatory-type subunit beta; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: Hydrogensulfite reductase; SPTR: A0LQK7 Sulfite reductase, dissimilatory-type subunit beta; TIGRFAM: sulfite reductase, dissimilatory-type subunit beta; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: sulfite reductase, dissimilatory-type subunit beta
YP_003806924.1	COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and subunit betas; InterPro IPR006067:IPR011806; KEGG: dal:Dalk_4301 sulfite reductase, dissimilatory-type subunit alpha; PFAM: nitrite and sulphite reductase 4Fe-4S region; PRIAM: Hydrogensulfite reductase; SPTR: Q93EU9 Dissimilatory sulfite reductase subunit alpha (Fragment); TIGRFAM: sulfite reductase, dissimilatory-type subunit alpha; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; TIGRFAM: sulfite reductase, dissimilatory-type subunit alpha
YP_003806925.1	KEGG: gyc:GYMC61_2168 protein of unknown function DUF955; SPTR: C9S113 Putative uncharacterized protein
YP_003806926.1	COGs: COG2930 conserved hypothetical protein; InterPro IPR007461; KEGG: xac:XAC4219 hypothetical protein; PFAM: protein of unknown function DUF500; SPTR: Q8PEX1 Putative uncharacterized protein; PFAM: Family of unknown function (DUF500)
YP_003806927.1	InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: ami:Amir_6259 NB-ARC domain protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: C6WIY7 NB-ARC domain protein; PFAM: Tetratricopeptide repeat
YP_003806928.1	COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: pth:PTH_0986 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: A5D3M9 Uncharacterized conserved protein; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: conserved hypothetical protein TIGR00149
YP_003806929.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sat:SYN_02143 Zn-dependent hydrolases; SPTR: Q2LSA2 Zn-dependent hydrolases; PFAM: Metallo-beta-lactamase superfamily
YP_003806930.1	KEGG: hypothetical protein; SPTR: A4HAX0 Putative uncharacterized protein (Fragment)
YP_003806931.1	COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: afw:Anae109_2194 phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: uracil phosphoribosyltransferase; SPTR: A7HCF0 phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain
YP_003806932.1	InterPro IPR001647:IPR009057:IPR012287; KEGG: dat:HRM2_21660 HTH-type transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C0QDK0 HTH-type transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003806933.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR016038:IPR002155; KEGG: dat:HRM2_45290 AtoB5; PRIAM: propanoyl-CoA C-acyltransferase; SPTR: D1JF94 Putative thiolase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain
YP_003806934.1	COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: afu:AF1292 hypothetical protein; PFAM: protein of unknown function DUF35; SPTR: O28977 Putative uncharacterized protein; PFAM: rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain
YP_003806935.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347:IPR002198:IPR016040; KEGG: dat:HRM2_45260 FabG9; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C0QF81 FabG9; PFAM: short chain dehydrogenase
YP_003806936.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR006089:IPR013786:IPR013764; KEGG: afu:AF0436 acyl-CoA dehydrogenase (acd-2); PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B9ZGA7 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003806937.1	KEGG: noc:Noc_2530 hypothetical protein; SPTR: B8KVG8 Sporulation and cell division repeat protein
YP_003806938.1	COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR008928:IPR012336:IPR004879:IPR012335; KEGG: sfu:Sfum_2547 hypothetical protein; PFAM: protein of unknown function DUF255; SPTR: A0LLC3 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255
YP_003806939.1	KEGG: dps:DP0200 hypothetical protein; SPTR: Q6ARU6 Putative uncharacterized protein
YP_003806940.1	KEGG: dvl:Dvul_1350 hypothetical protein; SPTR: Q72B28 Putative uncharacterized protein
YP_003806941.1	KEGG: dsa:Desal_0181 hypothetical protein; SPTR: C6BVN7 Putative uncharacterized protein
YP_003806942.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: mno:Mnod_1560 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: B8IPQ2 thioesterase superfamily protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003806943.1	KEGG: hypothetical LOC579604; SPTR: C8QGF4 Protein TolA
YP_003806944.1	COGs: COG1530 ribonuclease G and E; InterProIPR016027:IPR003029:IPR019307:IPR012340:IPR 004659; KEGG: gme:Gmet_2546 ribonuclease E; PFAM: RNA-binding protein AU-1/ribonuclease E/G; RNA binding S1 domain protein; SPTR: Q39SK9 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family
YP_003806945.1	InterPro IPR001450:IPR017900:IPR017896:IPR011802; KEGG: sfu:Sfum_1047 adenylylsulfate reductase, subunit beta; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A6ZJS6 AprB (Fragment); TIGRFAM: adenylylsulfate reductase, subunit beta; PFAM: Adenosine-5'-phosphosulfate reductase subunit beta; TIGRFAM: adenosine phosphosulphate reductase, subunit beta
YP_003806946.1	COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR015939:IPR003953:IPR011803; KEGG: sfu:Sfum_1048 adenylylsulfate reductase subunit alpha; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: A6ZJS7 AprA (Fragment); TIGRFAM: adenylylsulfate reductase, subunit alpha; PFAM: domain; FAD binding domain; TIGRFAM: adenosine phosphosulphate reductase, subunit alpha
YP_003806947.1	COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterPro IPR006076; KEGG: sfu:Sfum_1287 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: FAD dependent oxidoreductase; SPTR: A0LHS7 4Fe-4S ferredoxin, iron-sulfur binding domain protein; PFAM: FAD dependent oxidoreductase
YP_003806948.1	COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterProIPR013027:IPR004792:IPR001450:IPR003813:IPR 017900:IPR017896; KEGG: adg:Adeg_1078 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase subunit delta; HI0933 family protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C9RD78 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase, subunit delta; Pyridine nucleotide-disulphide oxidoreductase
YP_003806949.1	COGs: COG1150 Heterodisulfide reductase subunit C; InterPro IPR009051:IPR017900:IPR012285:IPR017896; KEGG: drm:Dred_0633  heterodisulfide reductase, C subunit; SPTR: A7BT24 Heterodisulfide reductase subunit C
YP_003806950.1	COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: dae:Dtox_3573 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: C8VVZ8 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich domain
YP_003806951.1	KEGG: sfu:Sfum_1055 hypothetical protein; SPTR: A0LH47 Putative uncharacterized protein; PFAM: Ogr/delta-like zinc finger
YP_003806952.1	InterPro IPR004027:IPR010916; KEGG: chl:Chy400_0565 preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SPTR: B9LJ40 Protein translocase subunit secA; PFAM: SEC-C motif
YP_003806953.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: azc:AZC_1520 glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: A8HXN1 glycosyltransferase; PFAM: glycosyl transferases group 1
YP_003806954.1	InterPro IPR001173; KEGG: azc:AZC_1521 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: A8HXN4 glycosyltransferase; PFAM: glycosyl transferase family 2
YP_003806955.1	InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: ter:Tery_2862 hypothetical protein; PFAM: hypothetical protein; SPTR: Q4CAF1 TPR repeat:Sel1-like repeat:Sel1-like repeat; TIGRFAM: pentatricopeptide repeat domain (PPR motif)
YP_003806956.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: ter:Tery_4437 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q10WF0 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2
YP_003806957.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: hau:Haur_2165 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: A2BD23 WsbJ; PFAM: glycosyl transferases group 1
YP_003806958.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: dvm:DvMF_2922 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B9BAZ3 UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family
YP_003806959.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: mag:amb1074 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Q2W8E7 Predicted glycosyltransferase; PFAM: glycosyl transferase family 2
YP_003806960.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004090:IPR003660:IPR004089:IPR018212; KEGG: dps:DP0161 methyl-accepting chemotaxis protein (TlpB); PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; SPTR: Q6ARY5 Related to methyl-accepting chemotaxis protein (TlpB); PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003806961.1	COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterProIPR001821:IPR019546:IPR006137:IPR016160:IPR 017909:IPR006311; KEGG: dps:DP0160 periplasmic [NiFeSe] hydrogenase, small subunit [precursor]; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Twin-arginine translocation pathway, signal sequence, subgroup; PRIAM: Hydrogenase (acceptor); SPTR: Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit [Precursor]; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; hydrogenase (NiFe) small subunit (hydA)
YP_003806962.1	COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501:IPR018194; KEGG: dps:DP0159 cytochrome-c3 hydrogenase (NiFeSe), large subunit; PFAM: nickel-dependent hydrogenase large subunit; PRIAM: cytochrome-c3 hydrogenase; SPTR: Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), large subunit; PFAM: Nickel-dependent hydrogenase
YP_003806963.1	COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: ppf:Pput_2963 ATPase involved in DNA repair-like protein; PFAM: SMC domain protein; SPTR: A5W4N1 ATPase involved in DNA repair-like protein
YP_003806964.1	KEGG: pmi:PMT9312_0494 thermostable carboxypeptidase 1; SPTR: Q31C40 Thermostable carboxypeptidase 1
YP_003806965.1	KEGG: ppf:Pput_2965 hypothetical protein; SPTR: C2GJC8 Putative uncharacterized protein (Fragment)
YP_003806966.1	KEGG: dac:Daci_1458 hypothetical protein; SPTR: A9BUJ4 Putative uncharacterized protein
YP_003806967.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: gsu:GSU3025 heptosyltransferase family protein; PFAM: glycosyl transferase family 9; SPTR: Q748H7 Heptosyltransferase family protein; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II
YP_003806968.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fjo:Fjoh_1898 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C3FB30 glycosyl transferase, group 2; PFAM: glycosyl transferase family 2
YP_003806969.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: rxy:Rxyl_3107 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Q1ARG4 glycosyl transferase, group 1; PFAM: glycosyl transferases group 1
YP_003806970.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein; PFAM: glycosyl transferase family 2; SPTR: Q748H9 glycosyl transferase, group 1/2 family protein; PFAM: glycosyl transferase family 2
YP_003806971.1	COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterProIPR013105:IPR011717:IPR011990:IPR019734:IPR 013026; KEGG: cbh:CLC_2580 hypothetical protein; PFAM: hypothetical protein; Tetratricopeptide TPR_4; SPTR: C6PUP8 Putative uncharacterized protein
YP_003806972.1	COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR011005:IPR000489; KEGG: dal:Dalk_4619 dihydropteroate synthase DhpS; PFAM: dihydropteroate synthase DHPS; SPTR: B8FNL6 Dihydropteroate synthase DHPS; PFAM: Pterin binding enzyme
YP_003806973.1	COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006674:IPR006261:IPR003607; KEGG: dol:Dole_1124 metal-dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Q1NXY4 Deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase
YP_003806974.1	COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: rca:Rcas_0546 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A7NGS9 ABC transporter related; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter
YP_003806975.1	COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: adg:Adeg_1596 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C9R8R2 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003806976.1	COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dba:Dbac_2284 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C7LQG4 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003806977.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: dma:DMR_09050 ABC transporter substrate binding protein precursor; SPTR: C4XK41 ABC transporter substrate binding protein
YP_003806978.1	COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: cag:Cagg_2428 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B8G3C8 ABC transporter related; PFAM: ABC transporter
YP_003806979.1	COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: dvm:DvMF_2446 phenylacetate-coenzyme A ligase, PFAM: AMP-dependent synthetase and ligase; SPTR: B8DMU7 phenylacetate-coenzyme A ligase, PFAM: AMP-binding enzyme
YP_003806980.1	COGs: COG1427 periplasmic solute-binding protein; InterPro IPR003773; KEGG: gur:Gura_1828 hypothetical protein; PFAM: protein of unknown function DUF178; SPTR: Q74BM4 Putative uncharacterized protein; PFAM: Putative periplasminc binding protein (DUF178)
YP_003806981.1	InterPro IPR013216; KEGG: cbh:CLC_2580 hypothetical protein; PFAM: methyltransferase type 11; SPTR: C6PUP8 Putative uncharacterized protein; PFAM: methyltransferase domain; glycosyl transferases group 1
YP_003806982.1	KEGG: afw:Anae109_4343 hypothetical protein; SPTR: A7HIH5 UPF0078 membrane protein Anae109_4343
YP_003806983.1	KEGG: dal:Dalk_1659 hypothetical protein; SPTR: B8FAR1 Putative uncharacterized protein
YP_003806984.1	COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR016040:IPR003869:IPR020025; KEGG: dsa:Desal_3630 polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein CapD; SPTR: C6BTJ5 polysaccharide biosynthesis protein CapD; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: polysaccharide biosynthesis protein; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase
YP_003806985.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: phe:Phep_3568 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: C4V428 Aldo/keto reductase; PFAM: Aldo/keto reductase family
YP_003806986.1	COGs: COG1861 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase homolog; InterPro IPR003329; KEGG: rpf:Rpic12D_0583 acylneuraminate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; SPTR: C6BDF3 Acylneuraminate cytidylyltransferase; PFAM: Cytidylyltransferase
YP_003806987.1	COGs: COG0001 glutamate-1-semialdehyde aminotransferase; InterPro IPR015424:IPR005814:IPR015421; KEGG: nwi:Nwi_2388 aminotransferase class-III; PFAM: aminotransferase class-III; SPTR: Q3SPZ9 Aminotransferase; PFAM: Aminotransferase class-III
YP_003806988.1	COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR016040:IPR001509; KEGG: hba:Hbal_0199 dTDP-4-dehydrorhamnose reductase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: A3Z4H1 Hypothetical dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase
YP_003806989.1	COGs: COG2089 Sialic acid synthase; InterPro IPR006190:IPR013132:IPR013974:IPR013785; KEGG: fnu:FN1684 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; PRIAM: N-acetylneuraminate synthase; SPTR: A3Z4G4 N-acetylneuraminate synthase; PFAM: SAF domain; NeuB family
YP_003806990.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sye:Syncc9902_0083 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Q2BI18 glycosyltransferase; PFAM: glycosyl transferase family 2
YP_003806991.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sye:Syncc9902_0043 methylase involved in ubiquinone/menaquinone biosynthesis-like; PFAM: methyltransferase type 11; SPTR: Q3B0W0 methylase involved in ubiquinone/menaquinone biosynthesis-like; PFAM: methyltransferase domain
YP_003806992.1	InterPro IPR019809; KEGG: mtp:Mthe_1067 methyltransferase type 11; SPTR: A0B827 methyltransferase type 11
YP_003806993.1	COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterPro IPR011004:IPR001451:IPR018357; KEGG: ade:Adeh_4281 acetyltransferase; SPTR: Q2IHI8 acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats)
YP_003806994.1	InterPro IPR007197; KEGG: cbh:CLC_2585 hypothetical protein; PFAM: radical SAM domain protein; SPTR: A7FQ13 Putative uncharacterized protein; PFAM: radical SAM superfamily
YP_003806995.1	COGs: COG1215 glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: tro:trd_1593 dTDP-Rha:a-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Q2BI24 Teichoic acid biosynthesis protein; PFAM: glycosyl transferase family 2
YP_003806996.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006158:IPR007197:IPR013785:IPR006638; KEGG: dol:Dole_1742 radical SAM domain-containing protein; PFAM: radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: A9A0S1 radical SAM domain protein; PFAM: radical SAM superfamily; B12 binding domain
YP_003806997.1	KEGG: sit:TM1040_1022 L-glutamine synthetase; SPTR: C9D3W7 Glutamine synthetase, type I
YP_003806998.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: amc:MADE_02638 enoyl-CoA hydratase/carnithine racemase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: B4RTC8 enoyl-CoA hydratase/carnithine racemase; PFAM: enoyl-CoA hydratase/isomerase family
YP_003806999.1	COGs: COG1013 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit beta; InterPro IPR011766:IPR011896; KEGG: drt:Dret_0516 pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: C8X0I8 pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; PFAM: pyruvate ferredoxin oxidoreductase subunit beta C terminal; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, subunit beta, pyruvate/2-ketoisovalerate family
YP_003807000.1	COGs: COG0674 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit alpha; InterPro IPR002869:IPR009014:IPR019752:IPR002880; KEGG: dvm:DvMF_0184 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate/ketoisovalerate oxidoreductase; SPTR: B8DNT7 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: domain; pyruvate ferredoxin/flavodoxin oxidoreductase
YP_003807001.1	COGs: COG0693 Putative intracellular protease/amidase; InterPro IPR002818:IPR006286; KEGG: dba:Dbac_2033 intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; SPTR: Q1NLN4 peptidase C56, PfpI; TIGRFAM: intracellular protease, PfpI family; PFAM: DJ-1/PfpI family; TIGRFAM: intracellular protease, PfpI family
YP_003807002.1	COGs: COG2105 conserved hypothetical protein; InterPro IPR009288:IPR013024; KEGG: ent:Ent638_0400 hypothetical protein; PFAM: AIG2 family protein; SPTR: A3UE45 Putative uncharacterized protein; PFAM: AIG2-like family
YP_003807003.1	COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; InterPro IPR003358; KEGG: svi:Svir_39160 tRNA (guanine-N(7)-)-methyltransferase; PFAM:  methyltransferase; SPTR: C7MS02 tRNA (Guanine-N(7)-)-methyltransferase; PFAM: Putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase
YP_003807004.1	COGs: COG0585 conserved hypothetical protein; InterPro IPR020103:IPR001656:IPR020119:IPR011760; KEGG: acp:A2cp1_3784 tRNA pseudouridine synthase D TruD; PFAM: tRNA pseudouridine synthase D TruD; SPTR: B8J7C8 tRNA pseudouridine synthase D; PFAM: tRNA pseudouridine synthase D (TruD); TIGRFAM: conserved hypothetical protein TIGR00094
YP_003807005.1	KEGG: fal:FRAAL0040 hypothetical protein
YP_003807006.1	COGs: COG1489 DNA-binding protein stimulates sugar fermentation; InterPro IPR005224:IPR000595; KEGG: gsu:GSU2716 sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; SPTR: P61664 Sugar fermentation stimulation protein homolog; TIGRFAM: sugar fermentation stimulation protein; PFAM: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein
YP_003807007.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006158:IPR007197:IPR013785:IPR006638; KEGG: dol:Dole_3058 radical SAM domain-containing protein; PFAM: radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: A8ZZI9 radical SAM domain protein; PFAM: radical SAM superfamily; B12 binding domain
YP_003807008.1	KEGG: dol:Dole_2587 hypothetical protein; SPTR: A8ZWQ9 Putative uncharacterized protein
YP_003807009.1	InterPro IPR008930:IPR001300; KEGG: dal:Dalk_2453 hypothetical protein; SPTR: B8FB60 Putative uncharacterized protein
YP_003807010.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dol:Dole_2593 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: A8ZWR5 methyltransferase type 11; PFAM: methyltransferase domain
YP_003807011.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: dal:Dalk_3322 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: B8FJ84 glycosyl transferase group 1; PFAM: glycosyl transferases group 1
YP_003807012.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: rxy:Rxyl_3119 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q1ARF2 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2
YP_003807013.1	COGs: COG2368 Aromatic ring hydroxylase; InterPro IPR009100:IPR004925:IPR006091:IPR013764; KEGG: chy:CHY_1730 4-hydroxyphenylacetate 3-hydroxylase family protein; PFAM: 4-hydroxyphenylacetate 3-hydroxylase; PRIAM: vinylacetyl-CoA delta-isomerase; SPTR: Q3ABD4 4-hydroxyphenylacetate 3-hydroxylase family protein; PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal
YP_003807014.1	InterPro IPR009057:IPR001647:IPR012287; KEGG: dat:HRM2_21370 HTH-type transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C0QDH1 HTH-type transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003807015.1	KEGG: ade:Adeh_0244 LigA; SPTR: P0C348 peptide chain release factor 2; manually curated; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2
YP_003807016.1	COGs: COG0815 Apolipoprotein N-acyltransferase; InterPro IPR003010:IPR004563; KEGG: dol:Dole_1768 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: A9A0U7 Apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase
YP_003807017.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644:IPR005170; KEGG: gme:Gmet_2368 CBS:transporter-associated region; PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; SPTR: Q39T31 CBS:Transporter-associated region; PFAM: CBS domain; Transporter associated domain
YP_003807018.1	KEGG: hypothetical protein; SPTR: A2DUQ4 Putative uncharacterized protein
YP_003807019.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR001789; KEGG: sfu:Sfum_0187 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: A0LEN7 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003807020.1	KEGG: sfu:Sfum_0186 glycosyl transferase family protein; SPTR: A0LEN6 glycosyl transferase, family 2
YP_003807021.1	COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR016117:IPR005321; KEGG: vap:Vapar_3677 peptidase S58 DmpA; PFAM: peptidase S58 DmpA; SPTR: C5CU81 peptidase S58 DmpA; PFAM: peptidase family S58
YP_003807022.1	COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR006059:IPR011862; KEGG: sat:SYN_00056 ABC-type phosphate transport system, periplasmic component; PFAM: extracellular solute-binding protein family 1; SPTR: Q2LTF4 ABC-type phosphate transport system, periplasmic component; TIGRFAM: phosphate binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate binding protein
YP_003807023.1	KEGG: ppf:Pput_1346 hypothetical protein; SPTR: Q88EC2 Putative uncharacterized protein
YP_003807024.1	COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR000515:IPR011864; KEGG: sat:SYN_00057 ABC-type phosphate transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q2LTG2 ABC-type phosphate transport system, permease component; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC; phosphate ABC transporter, permease protein PstA
YP_003807025.1	COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR000515:IPR005672; KEGG: sat:SYN_00058 ABC-type phosphate transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q2LTG1 ABC-type phosphate transport system, permease component; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA
YP_003807026.1	COGs: COG1117 ABC-type phosphate transport system ATPase component; InterProIPR003439:IPR017871:IPR015850:IPR005670:IPR 003593; KEGG: pth:PTH_1677 ABC-type phosphate transport system, ATPase component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A5D1M1 ABC-type phosphate transport system, ATPase component; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein
YP_003807027.1	COGs: COG0704 phosphate uptake regulator; InterPro IPR008170; KEGG: aae:aq_906 transcriptional regulator (PhoU-like); PFAM: PhoU family protein; SPTR: O67053 phosphate transport system protein phoU homolog; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU
YP_003807028.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR001867:IPR018480; KEGG: sfu:Sfum_0707 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: A0LG53 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_003807029.1	COGs: COG5002 Signal transduction histidine kinase; InterProIPR004358:IPR003594:IPR009082:IPR003660:IPR 013656:IPR003661:IPR005467:IPR000014; KEGG: ppd:Ppro_3156 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; SPTR: A1ATS9 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003807030.1	KEGG: aba:Acid345_0890 polysaccharide biosynthesis protein; SPTR: C0W543 Membrane protein
YP_003807031.1	KEGG: bba:Bd2232 single-strand DNA-specific exonuclease; SPTR: C1MHE7 Predicted protein
YP_003807032.1	COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: gur:Gura_1715 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: A4BST9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_003807033.1	COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR002616:IPR004803; KEGG: geo:Geob_3451 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: B9M5N5 Queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; manually curated; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming
YP_003807034.1	COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: sfu:Sfum_1240 preprotein translocase, YajC subunit; PFAM: YajC family protein; SPTR: A0LHN0 Protein translocase subunit yajC; TIGRFAM: preprotein translocase, YajC subunit; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit
YP_003807035.1	COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR003335:IPR005791; KEGG: dol:Dole_2442 protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: A8ZW12 Protein-export membrane protein SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family
YP_003807036.1	COGs: COG0341 Preprotein translocase subunit SecF; InterPro IPR003335:IPR005665; KEGG: dsa:Desal_1637 protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: C6BSZ5 Protein-export membrane protein SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: Protein export membrane protein; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF
YP_003807037.1	COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: gsu:GSU0106 soj protein; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: Q74GY7 Soj protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003807038.1	COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: gme:Gmet_3412 chromosome segregation DNA-binding protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: B9XGP1 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins
YP_003807039.1	InterPro IPR010298; KEGG: dol:Dole_1633 hypothetical protein; PFAM: protein of unknown function DUF901; SPTR: A9A0D7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF901)
YP_003807040.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR009082:IPR001789:IPR003661; KEGG: mxa:MXAN_1245 sigma-54 dependent DNA-binding response regulator SasR; PFAM: response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; SPTR: Q1DCW9 Sigma-54 dependent DNA-binding response regulator SasR; PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain
YP_003807041.1	COGs: COG0344 membrane protein; InterPro IPR003811:IPR020788; KEGG: pca:Pcar_0651 hypothetical protein; PFAM: protein of unknown function DUF205; SPTR: Q3A6U7 UPF0078 membrane protein Pcar_0651; PFAM: Domain of unknown function (DUF205); TIGRFAM: conserved hypothetical integral membrane protein TIGR00023
YP_003807042.1	KEGG: dol:Dole_0381 hypothetical protein; SPTR: A8ZT27 Putative uncharacterized protein
YP_003807043.1	InterPro IPR019300; KEGG: tye:THEYE_A0086 hypothetical protein; PFAM: RNA-binding protein, predicted; SPTR: B5YHB6 Putative uncharacterized protein; PFAM: Predicted RNA-binding protein
YP_003807044.1	COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: dol:Dole_2131 hypothetical protein; SPTR: A8ZU02 Putative uncharacterized protein
YP_003807045.1	InterPro IPR000620; KEGG: gur:Gura_2208 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: A5G3M5 Putative uncharacterized protein; PFAM: EamA-like transporter family
YP_003807046.1	COGs: COG0569 K+ transport systems NAD-binding component; InterProIPR016040:IPR013099:IPR003148:IPR006037:IPR 000209; KEGG: glo:Glov_0875 TrkA-N domain protein; PFAM: TrkA-N domain protein; Ion transport 2 domain protein ; TrkA-C domain protein; SPTR: B3E534 TrkA-N domain protein; PFAM: TrkA-N domain; Ion channel; TrkA-C domain
YP_003807047.1	InterPro IPR011723; KEGG: dma:DMR_21170 hypothetical protein; SPTR: C4XS86 Putative uncharacterized protein; TIGRFAM: MJ0042 family finger-like protein; TIGRFAM: MJ0042 family finger-like domain
YP_003807048.1	COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836:IPR005904; KEGG: sfu:Sfum_1422 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: A0LI61 Hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase
YP_003807049.1	InterPro IPR005631; KEGG: rce:RC1_1263 TPR domain protein; PFAM: protein of unknown function DUF339; SPTR: Q2C9T4 TPR repeat family protein; PFAM: Protein of unknown function (DUF339)
YP_003807050.1	COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterProIPR009051:IPR001041:IPR017900:IPR012675:IPR 012285:IPR017896:IPR004489; KEGG: bpt:Bpet1823 succinate dehydrogenase iron-sulfur subunit; PRIAM: Succinate dehydrogenase (ubiquinone); SPTR: C1SJU7 Succinate dehydrogenase subunit B; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_003807051.1	COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterProIPR015939:IPR003953:IPR004112:IPR003952:IPR 011281:IPR014006; KEGG: apt:APA01_00330 succinate dehydrogenase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: C1SJU6 Succinate dehydrogenase subunit A; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
YP_003807052.1	COGs: COG2142 Succinate dehydrogenase hydrophobic anchor subunit; InterPro IPR000701:IPR014312; KEGG: cts:Ctha_0457 succinate dehydrogenase, membrane subunit, PFAM: succinate dehydrogenase cytochrome b subunit; SPTR: B3QUM2 Succinate dehydrogenase, membrane subunit, TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein
YP_003807053.1	InterPro IPR000701:IPR014314:IPR014312; KEGG: rmr:Rmar_0208 succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; SPTR: D0MD04 Succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; succinate dehydrogenase, cytochrome b556 subunit
YP_003807054.1	COGs: COG1838 Tartrate dehydratase subunit beta/Fumarate hydratase class I C-terminal domain; InterPro IPR004647; KEGG: nis:NIS_0837 fumarate/tartrate hydratase, subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; SPTR: A6Q390 Fumarate/tartrate hydratase, subunit beta; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta; PFAM: Fumarase C-terminus; TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region
YP_003807055.1	COGs: COG1951 Tartrate dehydratase subunit alpha/Fumarate hydratase class I N-terminal domain; InterPro IPR004646; KEGG: dma:DMR_05730 L-tartrate dehydratase subunit alpha; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; PRIAM: Fumarate hydratase; SPTR: C0GM93 Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; PFAM: Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
YP_003807056.1	KEGG: mxa:MXAN_3189 hypothetical protein; SPTR: C1FJ82 Aspartate/tyrosine/aromatic aminotransferase; PFAM: Protein of unknown function (DUF493)
YP_003807057.1	KEGG: dal:Dalk_5045 hypothetical protein; SPTR: C0GPX6 Putative uncharacterized protein
YP_003807058.1	KEGG: SPATA5L1; spermatogenesis associated 5-like 1; SPTR: C2CXF7 Putative uncharacterized protein
YP_003807059.1	InterPro IPR016035:IPR002641; KEGG: reu:Reut_A3434 patatin; PFAM: patatin; SPTR: Q8Y3G7 Putative esterase of the alpha-beta hydrolase superfamily protein; PFAM: patatin-like phospholipase
YP_003807060.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753:IPR018376; KEGG: dal:Dalk_0778 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: B8FHR6 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family
YP_003807061.1	COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR015424:IPR004839:IPR015421; KEGG: gme:Gmet_0487 L-threonine O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; SPTR: Q39YE4 L-threonine O-3-phosphate decarboxylase; PFAM: Aminotransferase class I and II; TIGRFAM: L-threonine-O-3-phosphate decarboxylase
YP_003807062.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR011006:IPR009057:IPR001789:IPR002078:IPR 002197:IPR003593; KEGG: acp:A2cp1_0976 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: B8JEK1 Sensor protein; PFAM: Response regulator receiver domain; Sigma-54 interaction domain
YP_003807063.1	InterPro IPR001781; KEGG: dat:HRM2_33650 hypothetical protein; PFAM: LIM zinc-binding protein; SPTR: B2DD80 Putative uncharacterized protein; PFAM: LIM domain
YP_003807064.1	KEGG: pag:PLES_09601 hypothetical protein; SPTR: A8W867 Outer membrane transport barrel
YP_003807065.1	COGs: COG0455 ATPase involved in chromosome partitioning; KEGG: bga:BG0748 MinD-related ATP-binding protein; SPTR: C0T1H1 ATP-binding protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003807066.1	KEGG: cce:Ccel_0234 cadmium-translocating P-type ATPase; SPTR: B8I541 Cadmium-translocating P-type ATPase
YP_003807067.1	COGs: COG3370 conserved hypothetical protein; InterPro IPR009710; KEGG: dal:Dalk_4103 protein of unknown function DUF1291; PFAM: protein of unknown function DUF1291; SPTR: B8FM55 Putative uncharacterized protein; PFAM: DsrE/DsrF-like family
YP_003807068.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR016027:IPR000424:IPR012340:IPR011344; KEGG: hoh:Hoch_5071 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: D0LVJ8 Single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_003807069.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123:IPR004552; KEGG: sat:SYN_01275 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Q2LQ66 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_003807070.1	COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541:IPR003593; KEGG: sat:SYN_01274 cell division protein; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: ATPase AAA; SPTR: Q2LQ67 Cell division protein; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family
YP_003807071.1	COGs: COG0429 hydrolase of the alpha/beta-hydrolase fold; InterPro IPR000073:IPR012020; KEGG: dal:Dalk_0422 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: B8FH42 Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold
YP_003807072.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR016040:IPR008927:IPR006176:IPR006108:IPR 006180:IPR013328; KEGG: dal:Dalk_2639 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: B8FIU1 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_003807073.1	COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR016102:IPR016040:IPR003781; KEGG: dat:HRM2_21900 hypothetical protein; PFAM: CoA-binding domain protein; SPTR: C0QDM4 Putative uncharacterized protein; PFAM: CoA binding domain
YP_003807074.1	COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR013650:IPR011761; KEGG: dol:Dole_0137 ATP-grasp domain-containing protein; PFAM: ATP-grasp domain protein; SPTR: A8ZSN4 ATP-grasp domain protein; PFAM: ATP-grasp domain
YP_003807075.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347:IPR002198:IPR016040; KEGG: dal:Dalk_2964 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: B8FL19 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003807076.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753:IPR018376; KEGG: chy:CHY_1739  3-hydroxybutyryl-CoA dehydratase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: Q3ABC5 Putative 3-hydroxybutyryl-CoA dehydratase; PFAM: enoyl-CoA hydratase/isomerase family
YP_003807077.1	COGs: COG2030 Acyl dehydratase; InterPro IPR002539; KEGG: gsu:GSU0237 MaoC-like domain-containing protein; PFAM: MaoC domain protein dehydratase; PRIAM: enoyl-CoA hydratase; SPTR: Q74GK9 MaoC-like domain protein; PFAM: MaoC like domain
YP_003807078.1	COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: dsy:DSY3794 hypothetical protein; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: Q24QV9 Putative uncharacterized protein; PFAM: CoA-transferase family III
YP_003807079.1	COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: dvl:Dvul_1419 outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; SPTR: C6MQM6 Outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA; TIGRFAM: periplasmic chaperone LolA
YP_003807080.1	KEGG: pau:PA14_64420 hypothetical protein; SPTR: A8MSS4 Putative uncharacterized protein OGG1 (Fragment)
YP_003807081.1	KEGG: nml:Namu_3183 glycosyl transferase family 2; SPTR: C8XC11 glycosyl transferase family 2
YP_003807082.1	InterProIPR016024:IPR004155:IPR000357:IPR011989:IPR 000225; KEGG: mba:Mbar_A1826 hypothetical protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SPTR: A0ZHQ4 Putative uncharacterized protein; PFAM: PBS lyase HEAT-like repeat
YP_003807083.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_0342 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C1SI40 Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003807084.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_5103 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: D1JGD8 Putative uncharacterized protein; PFAM: methyltransferase domain
YP_003807085.1	InterPro IPR016196:IPR011701; KEGG: amr:AM1_A0171 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8ZKH8 Major facilitator superfamily transporter, PFAM: Major Facilitator Superfamily
YP_003807086.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR009057:IPR000005:IPR018062:IPR012287:IPR 018060; KEGG: cyn:Cyan7425_2438 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: B8HXA5 Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_003807087.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR020449:IPR009057:IPR000005:IPR018060; KEGG: dsa:Desal_2087 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C6BVU4 Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_003807088.1	InterPro IPR013217; KEGG: dae:Dtox_2658 O-methyltransferase family 2; PFAM: methyltransferase type 12; SPTR: D1JGE4 Putative uncharacterized protein; PFAM: O-methyltransferase
YP_003807089.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q311J9 Receptor-mostly Fe transport; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor
YP_003807090.1	KEGG: ote:Oter_2307 hypothetical protein; SPTR: B1ZQI0 Putative uncharacterized protein
YP_003807091.1	COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterProIPR007197:IPR010723:IPR013785:IPR004559:IPR 006638; KEGG: aeh:Mlg_2448 coproporphyrinogen III oxidase, anaerobic; PFAM: radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q0A5U9 Coproporphyrinogen III oxidase, anaerobic; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM superfamily; HemN C-terminal region; TIGRFAM:  oxygen-independent coproporphyrinogen III oxidase
YP_003807092.1	KEGG: GK21128 gene product from transcript GK21128-RA; SPTR: B4N7J8 GK21128
YP_003807093.1	COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR010994:IPR003488; KEGG: rmr:Rmar_1985 DNA protecting protein DprA; PFAM: SMF family protein; SPTR: D0MKF5 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA
YP_003807094.1	COGs: COG0550 Topoisomerase IA; InterProIPR000380:IPR006171:IPR013497:IPR013498:IPR 013824:IPR013826:IPR005733:IPR006154:IPR003601:IPR003602; KEGG: dsa:Desal_3808 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; SPTR: C6BUQ9 DNA topoisomerase; TIGRFAM: DNA topoisomerase I; PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial
YP_003807095.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: afw:Anae109_1649 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A7HAV7 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003807096.1	COGs: COG2217 Cation transport ATPase; InterProIPR001757:IPR001366:IPR008250:IPR005834:IPR 018303:IPR000150:IPR006404:IPR006416; KEGG: dma:DMR_28780  cation translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; SPTR: C4XHJ5 Putative cation translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
YP_003807097.1	COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504:IPR020568:IPR003593; KEGG: lhk:LHK_02039 RadA; SMART: ATPase AAA; SPTR: C1D983 DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA
YP_003807098.1	COGs: COG3118 thioredoxin domain-containing protein; InterProIPR006662:IPR012336:IPR013766:IPR017937:IPR 012335:IPR017936:IPR005746; KEGG: sfu:Sfum_1708 thioredoxin; PFAM: thioredoxin domain; SPTR: A0LIZ3 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin; TIGRFAM: thioredoxin
YP_003807099.1	COGs: COG0492 thioredoxin reductase; InterPro IPR000103:IPR013027:IPR005982; KEGG: pth:PTH_1417 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A5D2B9 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase
YP_003807100.1	COGs: COG4105 DNA uptake lipoprotein; InterPro IPR011990:IPR019734:IPR013026:IPR017689; KEGG: dal:Dalk_2404 outer membrane assembly lipoprotein YfiO; SPTR: B8FB11 Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO
YP_003807101.1	KEGG: dsa:Desal_2444 hypothetical protein; SPTR: C6BXX0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2867)
YP_003807102.1	COGs: COG0013 Alanyl-tRNA synthetase; InterProIPR018164:IPR018162:IPR018163:IPR012947:IPR 003156:IPR019775:IPR018165:IPR002318; KEGG: sfu:Sfum_2527 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; SPTR: A0LLA3 Alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanyl-tRNA synthetase
YP_003807103.1	COGs: COG0468 RecA/RadA recombinase; InterProIPR001553:IPR013765:IPR020584:IPR020588:IPR 020587:IPR003593; KEGG: gme:Gmet_0198 recombinase A; PFAM: RecA domain protein; SMART: ATPase AAA; SPTR: Q1K3C4 Protein recA; TIGRFAM: recA protein; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA
YP_003807104.1	COGs: COG1514 2'-5' RNA ligase; InterPro IPR009097:IPR014051:IPR004175; KEGG: sti:Sthe_1898 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; SPTR: D1C514 2'-5' RNA ligase; TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase
YP_003807105.1	COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR001453:IPR008136:IPR008135; KEGG: gme:Gmet_0196 competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; SPTR: C8QYB6 Competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain
YP_003807106.1	COGs: COG5319 conserved hypothetical protein; InterPro IPR009562; KEGG: dal:Dalk_4330 protein of unknown function DUF1178; PFAM: protein of unknown function DUF1178; SPTR: B8FMH2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1178)
YP_003807107.1	COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase; InterPro IPR013217; KEGG: mgi:Mflv_3065 tRNA (adenine-N(1)-)-methyltransferase; PFAM: methyltransferase type 12; SPTR: C2GHJ6 Possible tRNA (Adenine-N(1)-)-methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit
YP_003807108.1	COGs: COG0174 Glutamine synthetase; InterPro IPR008147:IPR008146:IPR014746:IPR004809; KEGG: sat:SYN_01628 glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; SPTR: Q2LXX3 Glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I
YP_003807109.1	COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR011322:IPR015867; KEGG: drt:Dret_0112 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: C8WZD9 Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II
YP_003807110.1	COGs: COG0004 Ammonia permease; InterPro IPR002229:IPR001905:IPR018047; KEGG: tnp:Tnap_0194 ammonium transporter; PFAM: ammonium transporter; SPTR: B1L988 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter
YP_003807111.1	InterPro IPR010239; KEGG: dol:Dole_0109 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C8QW49 Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (Gcw_chp); TIGRFAM: conserved hypothetical protein, proteobacterial
YP_003807112.1	COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterProIPR020441:IPR009057:IPR003018:IPR002078:IPR 002197:IPR010113:IPR003593; KEGG: cts:Ctha_1655 transcriptional regulator, NifA, fis family; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: GAF domain protein; ATPase AAA; SPTR: Q8KC95 Nitrogen fixation specific regulatory protein nifA; TIGRFAM: Nif-specific regulatory protein; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: Nif-specific regulatory protein
YP_003807113.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR000759:IPR009051:IPR013027:IPR012285:IPR 016040:IPR006005; KEGG: mva:Mvan_5697 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: A1TH12 glutamate synthase (NADH) small subunit; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit
YP_003807114.1	COGs: COG0069 glutamate synthase domain 2; InterProIPR002489:IPR000583:IPR006982:IPR002932:IPR 013785:IPR017932; KEGG: ttr:Tter_0474 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase subunit alpha domain protein; PRIAM: glutamate synthase (ferredoxin); SPTR: D1CEN9 glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; glutamate synthase central domain; Glutamine amidotransferases class-II
YP_003807115.1	COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; InterPro IPR000991:IPR017926; KEGG: cja:CJA_0967 conserved proteinconserved protein; PFAM: glutamine amidotransferase class-I; SPTR: B3PLE3 Conserved proteinconserved protein; PFAM: Glutamine amidotransferase class-I
YP_003807116.1	COGs: COG0171 NAD synthase; InterPro IPR003010:IPR003694:IPR014729:IPR014445; KEGG: deb:DehaBAV1_0951 NH(3)-dependent NAD(+) synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PRIAM: NAD(+) synthase (glutamine-hydrolyzing); SPTR: A5FQJ6 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase
YP_003807117.1	COGs: COG1693 conserved hypothetical protein; InterPro IPR013668:IPR002846:IPR000169; KEGG: sat:SYN_03243  cytoplasmic protein; PFAM: Protein of unknown function DUF128; ribonuclease R winged-helix domain protein; SPTR: Q2LQG6 Hypothetical cytosolic protein; PFAM: Domain of unknown function DUF128; ribonuclease R winged-helix domain
YP_003807118.1	KEGG: ppf:Pput_2024 outer membrane porin; SPTR: C0FB13 Putative uncharacterized protein
YP_003807119.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR001789; KEGG: gau:GAU_1166  NtrC family two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C1A7J8 Putative NtrC family two-component response regulator; PFAM: Response regulator receiver domain
YP_003807120.1	COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537:IPR006371; KEGG: sfu:Sfum_0288 4-hydroxybenzoate polyprenyltransferase, PFAM: UbiA prenyltransferase; SPTR: A0LEY7 4-hydroxybenzoate polyprenyltransferase, TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM:  4-hydroxybenzoate polyprenyltransferase
YP_003807121.1	COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: hmo:HM1_1945 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, PFAM: carboxylyase-related protein; SPTR: B0TFS3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, TIGRFAM: UbiD family decarboxylase; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases
YP_003807122.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR004358:IPR003594:IPR011006:IPR009082:IPR 011620:IPR013655:IPR013656:IPR013767:IPR003661:IPR001789:I PR005467:IPR000014:IPR000700:IPR001610; KEGG: cyn:Cyan7425_3579 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; SPTR: B9XSQ1 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: 5TMR of 5TMR-LYT; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003807123.1	COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395:IPR018271; KEGG: reh:H16_B0196 DNA repair exonuclease, SbcC; PFAM: SMC domain protein; SPTR: Q0K4S7 DNA repair exonuclease, SbcC; TIGRFAM: exonuclease SbcC
YP_003807124.1	COGs: COG0420 DNA repair exonuclease; InterPro IPR004843:IPR004593; KEGG: sfu:Sfum_2821 nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; SPTR: A0LM47 Exodeoxyribonuclease I subunit D; TIGRFAM: nuclease SbcCD, D subunit; PFAM: Calcineurin-like phosphoesterase; Type 5 capsule protein repressor C terminal; TIGRFAM: exonuclease SbcD
YP_003807125.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR011650:IPR002933:IPR010182; KEGG: dvm:DvMF_0550 diaminopimelate aminotransferase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: B8DKS8 peptidase M20; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase family M20/M25/M40; peptidase dimerisation domain; TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
YP_003807126.1	KEGG: sfu:Sfum_2413 hypothetical protein; SPTR: A0LKZ2 Putative uncharacterized protein
YP_003807127.1	COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: dal:Dalk_3710 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: B8FLP4 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
YP_003807128.1	COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269:IPR018517:IPR013785; KEGG: gsu:GSU1005 dihydrouridine synthase family protein; PFAM: dihydrouridine synthase DuS; SPTR: Q74EF7 Dihydrouridine synthase family protein; PFAM: Dihydrouridine synthase (Dus); TIGRFAM:  TIM-barrel protein, nifR3 family
YP_003807129.1	COGs: COG0731 Fe-S oxidoreductase; InterPro IPR007197:IPR006638; KEGG: hha:Hhal_2049 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C8R0D6 radical SAM domain protein; PFAM: radical SAM superfamily
YP_003807130.1	InterPro IPR011449:IPR013424; KEGG: pat:Patl_1971 agarase; PFAM: protein of unknown function DUF1555; SPTR: B9ZJM7 Putative uncharacterized protein; TIGRFAM: PEP-CTERM  exosortase interaction domain
YP_003807131.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: dsy:DSY4797 hypothetical protein; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: Q24N06 Putative uncharacterized protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003807132.1	COGs: COG1294 cytochrome bd-type quinol oxidase subunit 2; InterPro IPR003317; KEGG: dds:Ddes_2195 cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; SPTR: B8J446 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB)
YP_003807133.1	COGs: COG1271 cytochrome bd-type quinol oxidase subunit 1; InterPro IPR002585; KEGG: sfu:Sfum_0339 cytochrome bd ubiquinol oxidase, subunit I; PFAM: cytochrome bd ubiquinol oxidase subunit I; SPTR: A0LF37 cytochrome bd ubiquinol oxidase, subunit I; PFAM: Bacterial cytochrome Ubiquinol Oxidase
YP_003807134.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764; KEGG: scl:sce3575 butyryl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: A9GS62 butyryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003807135.1	COGs: COG2524 transcriptional regulator protein; InterPro IPR000644; KEGG: pth:PTH_2126 CBS domain-containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: A5D0B8 FOG: CBS domain; PFAM: CBS domain
YP_003807136.1	InterPro IPR006342; KEGG: cyt:cce_0521 hypothetical protein; SPTR: B5JGB3 methyltransferase, FkbM family protein; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family
YP_003807137.1	COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR008930:IPR002890:IPR011625:IPR001599; KEGG: acp:A2cp1_1926 alpha-2-macroglobulin domain protein; PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; alpha-2-macroglobulin; SPTR: B8J778 Alpha-2-macroglobulin domain protein; PFAM: Alpha-2-macroglobulin family; MG2 domain; Alpha-2-macroglobulin family N-terminal region; Alpha-2-macroglobulin MG1 domain
YP_003807138.1	COGs: COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; InterProIPR012338:IPR001264:IPR001460:IPR009647:IPR 011815; KEGG: ade:Adeh_2036 glycosyl transferase family penicillin-binding protein transpeptidase; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; PRIAM: peptidoglycan glycosyltransferase; SPTR: Q2IJH6 glycosyl transferase, family 51 / Penicillin-binding protein, transpeptidase; TIGRFAM: penicillin-binding protein 1C; PFAM: Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C
YP_003807139.1	COGs: COG1045 serine acetyltransferase; InterPro IPR011004:IPR001451; KEGG: sfu:Sfum_2682 serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; PRIAM: serine O-acetyltransferase; SPTR: A0LLQ8 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase
YP_003807140.1	COGs: COG0031 Cysteine synthase; InterPro IPR001926:IPR005856:IPR005859; KEGG: dal:Dalk_2651 cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; SPTR: B8FIV3 Cysteine synthase A; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases
YP_003807141.1	KEGG: hor:Hore_13900 hypothetical protein; SPTR: B8CXX1 Putative uncharacterized protein
YP_003807142.1	COGs: COG2045 phosphosulfolactate phosphohydrolase; InterPro IPR005238; KEGG: ttu:TERTU_0169  2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulfolactate phosphatase; SPTR: C5BLF2 Putative 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; TIGRFAM: 2-phosphosulfolactate phosphatase
YP_003807143.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015424:IPR000653:IPR015421:IPR015422; KEGG: bsu:BSU37890  glutamine-dependent sugar transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: P39623 Spore coat polysaccharide biosynthesis protein spsC; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_003807144.1	COGs: COG1787 endonuclease distantly related to Holliday junction resolvase and Mrr-like restriction enzyme; InterPro IPR011335:IPR007560; KEGG: bbe:BBR47_35100 hypothetical protein; PFAM: restriction endonuclease; SPTR: C0ZFC8 Putative uncharacterized protein; PFAM: restriction endonuclease
YP_003807145.1	KEGG: hmo:HM1_2365 acetoin utilization protein, subunit A; SPTR: B0TIH4 Acetoin utilization protein, subunit a
YP_003807146.1	COGs: COG0074 Succinyl-CoA synthetase subunit alpha; InterProIPR005810:IPR016040:IPR016102:IPR003781:IPR 005811:IPR017440; KEGG: cch:Cag_0466 succinyl-CoA ligase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding domain protein; SPTR: Q3ATD6 Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, subunit alpha
YP_003807147.1	COGs: COG0045 Succinyl-CoA synthetase subunit beta; InterProIPR016102:IPR013650:IPR005811:IPR017866:IPR 013816:IPR011761:IPR005809; KEGG: mgm:Mmc1_1747 succinyl-CoA synthetase (ADP-forming) subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: A8TIM8 Succinyl-CoA synthetase, subunit beta; TIGRFAM: succinyl-CoA synthetase, subunit beta; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, subunit beta
YP_003807148.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mba:Mbar_A2392 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Q469Y0 Putative uncharacterized protein; PFAM: methyltransferase domain
YP_003807149.1	KEGG: ppd:Ppro_1942 hypothetical protein; SPTR: A1AQD1 Putative uncharacterized protein
YP_003807150.1	KEGG: ppd:Ppro_1941 hypothetical protein; SPTR: A1AQD0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329)
YP_003807151.1	COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: ppd:Ppro_1940 RND efflux transporter; SPTR: A1AQC9 Exporters of the RND superfamily; PFAM: MMPL family
YP_003807152.1	InterPro IPR000835:IPR011991; KEGG: ppd:Ppro_1939 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: A1AQC8 Transcriptional regulator, MarR family; PFAM: MarR family
YP_003807153.1	COGs: COG1335 amidase related to nicotinamidase; InterPro IPR003881:IPR000868; KEGG: dae:Dtox_2831 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: C8W1X5 Isochorismatase hydrolase; PFAM: Isochorismatase family
YP_003807154.1	KEGG: rpb:RPB_2177 hypothetical protein; SPTR: Q2IY27 Putative uncharacterized protein; PFAM: Secretory lipase
YP_003807155.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: tgr:Tgr7_1963  methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Q1NWX2 Chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003807156.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: gvi:glr2042 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Q7NIZ0 Glr2042 protein; PFAM: methyltransferase domain
YP_003807157.1	COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR003495:IPR012202; KEGG: ppd:Ppro_0345 cobalamin synthesis protein, P47K; PFAM: cobalamin synthesis protein P47K; SPTR: A1AKV9 Cobalamin synthesis protein, P47K; PFAM: CobW/HypB/UreG, nucleotide-binding domain
YP_003807158.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: mja:MJ0121 sn-glycerol-3-phosphate transport ATP-binding protein (UgpC); PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q57585 Uncharacterized ABC transporter ATP-binding protein MJ0121
YP_003807159.1	KEGG: swo:Swol_1685 ABC-type Fe3+ transport system periplasmic component-like protein; SPTR: Q0AWC1 ABC-type Fe3+ transport system periplasmic component-like protein
YP_003807160.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531:IPR018181; KEGG: dat:HRM2_08940 TonB-dependent outer-membrane uptake protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: C0QKD6 TonB-dependent outer-membrane uptake protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003807161.1	KEGG: pca:Pcar_0857 ABC-type transport system, periplasmic component; SPTR: Q3A695 ABC-type transport system, periplasmic component
YP_003807162.1	COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: pca:Pcar_0856 ABC-type transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q3A696 ABC-type transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003807163.1	COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: pca:Pcar_0855 ABC-type transport system, ATPase component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q3A697 ABC-type transport system, ATPase component; PFAM: ABC transporter
YP_003807164.1	COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; InterPro IPR016040:IPR006153:IPR006037; KEGG: dge:Dgeo_0222 potassium/proton antiporter; PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; SPTR: Q1J1V9 Sodium/hydrogen exchanger; PFAM: Sodium/hydrogen exchanger family; TrkA-C domain
YP_003807165.1	KEGG: dsa:Desal_1384 hypothetical protein; SPTR: C6BRK6 Putative uncharacterized protein; PFAM: Uncharacterised ArCR, COG2043
YP_003807166.1	COGs: COG2076 Membrane transporter of cations and cationic drugs; InterPro IPR000390; KEGG: bbr:BB3914  membrane transport protein; PFAM: small multidrug resistance protein; SPTR: C0N1Z3 Multidrug resistance protein, SMR family; manually curated; PFAM: Small Multidrug Resistance protein
YP_003807167.1	COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterProIPR020103:IPR002942:IPR006145:IPR018496:IPR 000748; KEGG: adg:Adeg_1292 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: C9R7X1 Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase family
YP_003807168.1	COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234:IPR011991; KEGG: dal:Dalk_5225 chromosome segregation and condensation protein, ScpB; PFAM: chromosome segregation and condensation protein ScpB; SPTR: B8FEB4 Chromosome segregation and condensation protein, ScpB; TIGRFAM: segregation and condensation protein B; PFAM: Putative transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B
YP_003807169.1	COGs: COG1354 conserved hypothetical protein; InterPro IPR003768; KEGG: gbm:Gbem_2297 chromosome segregation and condensation protein ScpA; PFAM: chromosome segregation and condensation protein ScpA; SPTR: Q74C43 Putative uncharacterized protein; PFAM: ScpA/B protein
YP_003807170.1	COGs: COG1994 Zn-dependent protease; InterPro IPR008915; KEGG: dps:DP0062 hypothetical protein; PFAM: peptidase M50; SPTR: Q6ASD4 Conserved hypothetical membrane protein; PFAM: peptidase family M50
YP_003807171.1	COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR001667:IPR003156:IPR000644:IPR002646; KEGG: sfu:Sfum_0679 polynucleotide adenylyltransferase region; PFAM: polynucleotide adenylyltransferase region; CBS domain containing protein; phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SMART: CBS domain containing protein; SPTR: A0LG26 polynucleotide adenylyltransferase region; PFAM: DHH family; DHHA1 domain; CBS domain; poly A polymerase head domain
YP_003807172.1	COGs: COG4974 Site-specific recombinase XerD; InterProIPR011010:IPR010998:IPR004107:IPR002104:IPR 013762:IPR011932; KEGG: sfu:Sfum_0678 tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: A0LG25 Tyrosine recombinase XerD subunit; TIGRFAM: tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerD
YP_003807173.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR001714:IPR000994:IPR000587; KEGG: sfu:Sfum_0169 peptidase M24; PFAM: peptidase M24; creatinase; SPTR: Q1NY97 peptidase M24; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain
YP_003807174.1	COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterPro IPR002078:IPR003593; KEGG: aav:Aave_0172 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; SMART: ATPase AAA; SPTR: A1TIJ6 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Sigma-54 interaction domain
YP_003807175.1	COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR004455:IPR000304:IPR016040; KEGG: pth:PTH_1826 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: A5D185 Pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase
YP_003807176.1	COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: glo:Glov_2032 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B3E3C9 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003807177.1	COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: sat:SYN_01341 oligopeptide transport system permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C6MN67 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003807178.1	COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: sat:SYN_00608 oligopeptide-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: Q2LVZ1 Oligopeptide-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003807179.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: gsu:GSU2525 nitroreductase family protein; PFAM: nitroreductase; SPTR: Q74A65 Nitroreductase family protein; PFAM: Nitroreductase family
YP_003807180.1	KEGG: dal:Dalk_4409  lipoprotein; SPTR: B8FNB9 Putative lipoprotein
YP_003807181.1	COGs: COG0452 phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382:IPR007085:IPR005252; KEGG: sfu:Sfum_0467 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; PRIAM: phosphopantothenate--cysteine ligase; SPTR: Q1K0Z1 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic
YP_003807182.1	COGs: COG1573 uracil-DNA glycosylase; InterPro IPR005122:IPR005273; KEGG: hoh:Hoch_5015 phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; SPTR: D0LVE3 Phage SPO1 DNA polymerase-related protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4
YP_003807183.1	COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: tye:THEYE_A0592 membrane-bound serine protease; PFAM: protein of unknown function DUF107; SPTR: B5YJM0 Membrane-bound serine protease; PFAM: Clp protease; NfeD-like
YP_003807184.1	COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107:IPR001972; KEGG: sfu:Sfum_0464 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: A0LFG2 SPFH domain, Band 7 family protein; PFAM: SPFH domain / Band 7 family
YP_003807185.1	KEGG: dal:Dalk_0401 hypothetical protein; SPTR: B8FH22 Putative uncharacterized protein; PFAM: Rho termination factor, N-terminal domain
YP_003807186.1	COGs: COG0141 Histidinol dehydrogenase; InterPro IPR012131:IPR001692:IPR016161; KEGG: mma:MM_0424 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; PRIAM: Histidinol dehydrogenase; SPTR: Q8PZR8 Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase
YP_003807187.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003594:IPR011006; KEGG: lic:LIC11110 histidine kinase response regulator hybrid protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; SPTR: Q8F227 Two-component hybrid sensor and regulator; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003807188.1	COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001789:IPR010822:IPR001932:IPR011006; KEGG: hmo:HM1_2362 response regulator receiver modulated serine phosphatase; PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver; SPTR: B0TIH1 Response regulator receiver modulated serine phosphatase; PFAM: Response regulator receiver domain; Stage II sporulation protein E (SpoIIE)
YP_003807189.1	COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR001789:IPR000673:IPR008248:IPR011006; KEGG: cvi:CV_1009 chemotaxis-specific methylesterase; PFAM: CheB methylesterase; response regulator receiver; PRIAM: Protein-glutamate methylesterase; SMART: response regulator receiver; SPTR: Q1PXP9 Strongly similar to chemotaxis response regulator protein (glutamate methylesterase); PFAM: CheB methylesterase; Response regulator receiver domain
YP_003807190.1	COGs: COG1871 Chemotaxis protein; stimulates methylation of MCP protein; InterPro IPR005659; KEGG: sbm:Shew185_2243 chemoreceptor glutamine deamidase CheD; PFAM: CheD family protein; SPTR: A6WNJ2 CheD; PFAM: CheD; stimulates methylation of MCP proteins
YP_003807191.1	COGs: COG1352 methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: lic:LIC11871 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: Q8F4J9 methylase of chemotaxis methyl-accepting proteins; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain
YP_003807192.1	COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR008207:IPR002545; KEGG: dba:Dbac_0868 CheA signal transduction histidine kinase; PFAM: CheW domain protein; Hpt domain protein; SMART: CheW domain protein; Hpt domain protein; SPTR: C7LPE3 CheA signal transduction histidine kinase; PFAM: CheW-like domain; Hpt domain
YP_003807193.1	COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR008207:IPR004105:IPR003594:IPR002545:IPR 005467:IPR004358:IPR009082; KEGG: xom:XOO_2693 chemotaxis protein; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SPTR: Q2P1X9 Chemotaxis protein; PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain
YP_003807194.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006; KEGG: hor:Hore_22620 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8D0S1 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003807195.1	InterPro IPR002645; KEGG: xca:xccb100_1462  anti-anti-sigma factor; SPTR: Q8P7B2 Putative uncharacterized protein
YP_003807196.1	InterPro IPR002645; KEGG: pca:Pcar_1874 anti-anti-sigma regulatory factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Q1NPE5 Sulfate transporter/antisigma-factor antagonist STAS; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_003807197.1	InterPro IPR009875; KEGG: hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: C3Y8B3 Putative uncharacterized protein; PFAM: PilZ domain
YP_003807198.1	COGs: COG1360 flagellar motor protein; InterPro IPR006665; KEGG: dat:HRM2_28640 MotB2; PFAM: OmpA/MotB domain protein; SPTR: C0QJD9 MotB2; PFAM: OmpA family
YP_003807199.1	COGs: COG1291 flagellar motor component; InterPro IPR002898:IPR000540; KEGG: dma:DMR_12670 chemotaxis protein MotA; PFAM: MotA/TolQ/ExbB proton channel; SPTR: C0GN88 MotA/TolQ/ExbB proton channel; manually curated; PFAM: MotA/TolQ/ExbB proton channel family
YP_003807200.1	COGs: COG3016 Uncharacterized iron-regulated protein; InterPro IPR007314:IPR001478; KEGG: sfu:Sfum_2732 hypothetical protein; PFAM: protein of unknown function DUF399; SMART: PDZ/DHR/GLGF domain protein; SPTR: A0LLV8 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF399; PDZ domain (Also known as DHR or GLGF)
YP_003807201.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR011055; KEGG: sat:SYN_00940 peptidoglycan-specific endopeptidase, M23 family; PFAM: peptidase M23; SPTR: Q1NUT6 peptidase M23B; PFAM: peptidase family M23
YP_003807202.1	COGs: COG0663 carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451:IPR011004; KEGG: ank:AnaeK_1516 transferase hexapeptide repeat protein; SPTR: B4UK37 Transferase hexapeptide repeat protein; manually curated
YP_003807203.1	KEGG: sfu:Sfum_1244 hypothetical protein; SPTR: A0LHN4 Putative uncharacterized protein
YP_003807204.1	COGs: COG0361 Translation initiation factor 1 (IF-1); InterPro IPR006196:IPR012340:IPR004368:IPR016027; KEGG: hoh:Hoch_3286 translation initiation factor IF-1; PFAM: S1 IF1 family protein; SPTR: D0LTU4 Translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1
YP_003807205.1	COGs: COG0227 ribosomal protein L28; InterPro IPR001383; KEGG: dal:Dalk_2403 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: C7LSI8 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal L28 family; TIGRFAM: ribosomal protein L28
YP_003807206.1	COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR006674:IPR007685:IPR004095:IPR002912:IPR 012675:IPR004811:IPR003607:IPR012676; KEGG: gbm:Gbem_3211 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain protein; amino acid-binding ACT domain protein; PRIAM: GTP diphosphokinase; SMART: metal-dependent phosphohydrolase HD region; SPTR: C6MV80 (P)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: HD domain; ACT domain; Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family
YP_003807207.1	COGs: COG0442 Prolyl-tRNA synthetase; InterProIPR002314:IPR007214:IPR004154:IPR006195:IPR 002316:IPR004500; KEGG: dma:DMR_24360 prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein; SPTR: C4XTD0 Prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: Anticodon binding domain; YbaK / prolyl-tRNA synthetases associated domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II
YP_003807208.1	COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; InterPro IPR004588:IPR016425:IPR011005; KEGG: dds:Ddes_0950 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; SPTR: B6WSD2 Putative uncharacterized protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
YP_003807209.1	KEGG: cma:Cmaq_0628 alpha-L-glutamate ligase; SPTR: A8MCG3 Alpha-L-glutamate ligase, RimK family
YP_003807210.1	COGs: COG1683 conserved hypothetical protein; InterPro IPR007553; KEGG: sth:STH1078 hypothetical protein; PFAM: protein of unknown function DUF523; SPTR: Q67QI0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF523)
YP_003807211.1	COGs: COG0150 phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR000728:IPR010918:IPR004733:IPR016188; KEGG: pca:Pcar_1293 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; PRIAM: phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Q3A515 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase
YP_003807212.1	COGs: COG1592 Rubrerythrin; InterProIPR003251:IPR004039:IPR009040:IPR012347:IPR 009078; KEGG: sat:SYN_00469 rubrerythrin; PFAM: Rubrerythrin; rubredoxin-type Fe(Cys)4 protein; SPTR: Q2LUY1 Rubrerythrin; PFAM: Rubrerythrin
YP_003807213.1	COGs: COG2077 Peroxiredoxin; InterProIPR013740:IPR018219:IPR017936:IPR012335:IPR 012336; KEGG: sfu:Sfum_2340 redoxin domain-containing protein; PFAM: redoxin domain protein; SPTR: A0LKR9 thiol peroxidase (Atypical 2-Cys peroxiredoxin); PFAM: redoxin
YP_003807214.1	KEGG: gbm:Gbem_2839 hypothetical protein; SPTR: B5EIE1 Putative uncharacterized protein
YP_003807215.1	InterPro IPR001647:IPR012287:IPR009057; KEGG: cmi:CMM_0286 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: A6FY19 Putative TetR-family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003807216.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR000169:IPR016040; KEGG: drt:Dret_1322 NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C8X2G3 NmrA family protein; PFAM: Protein of unknown function (DUF2867); NmrA-like family
YP_003807217.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dde:Dde_0384 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C0GLF0 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003807218.1	KEGG: ppf:Pput_3927 hypothetical protein; SPTR: A5W7E1 Putative uncharacterized protein
YP_003807219.1	COGs: COG5587 conserved hypothetical protein; InterPro IPR012808:IPR015996; KEGG: sun:SUN_1370 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: B6BL81 Putative uncharacterized protein; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: conserved hypothetical protein TIGR02453
YP_003807220.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterProIPR015590:IPR001670:IPR018211:IPR016160:IPR 016162:IPR016161; KEGG: dal:Dalk_3586 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; iron-containing alcohol dehydrogenase; SPTR: B8FGP4 Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase
YP_003807221.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: pmy:Pmen_1368 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: A4XS17 Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_003807222.1	KEGG: pca:Pcar_0881 hypothetical protein; SPTR: Q3A671 Putative uncharacterized protein
YP_003807224.1	KEGG: vpr:Vpar_0633 hypothetical protein; SPTR: C4FQA0 Putative uncharacterized protein
YP_003807225.1	COGs: COG0370 Fe2+ transport system protein B; InterProIPR002917:IPR011619:IPR011642:IPR011640:IPR 006073:IPR005225:IPR003373; KEGG: dal:Dalk_4622 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; SPTR: B8FNL9 Ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain
YP_003807226.1	COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167:IPR008988; KEGG: dvm:DvMF_1016 FeoA family protein; PFAM: FeoA family protein; SPTR: B8DPR4 FeoA family protein; PFAM: FeoA domain
YP_003807227.1	KEGG: dba:Dbac_1912 hypothetical protein; SPTR: C7LXD2 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2325)
YP_003807228.1	COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR011991:IPR000835:IPR001808; KEGG: sfu:Sfum_3768 DtxR family iron dependent repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor; regulatory protein Crp; regulatory protein MarR; SPTR: A0LPT5 Iron (Metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain
YP_003807229.1	COGs: COG4148 ABC-type molybdate transport system ATPase component; InterPro IPR003439:IPR017871:IPR011868:IPR003593; KEGG: mag:amb3403 ABC-type molybdate transport system, ATPase component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q2RWI9 Molybdenum import ATP-binding protein modC; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter; TIGRFAM: molybdenum ABC transporter, ATP-binding protein
YP_003807230.1	COGs: COG4149 ABC-type molybdate transport system permease component; InterPro IPR000515:IPR011867; KEGG: mag:amb3404 ABC-type molybdate transport system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q2W1R7 ABC-type molybdate transport system, permease component; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: molybdate ABC transporter, permease protein
YP_003807231.1	COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR006059:IPR010916:IPR005950; KEGG: dat:HRM2_09850 ModA4; PFAM: extracellular solute-binding protein family 1; SPTR: C0QL11 ModA4; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein
YP_003807232.1	InterPro IPR001584:IPR012337:IPR009057; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain
YP_003807234.1	COGs: COG5345 conserved hypothetical protein; InterPro IPR016936; KEGG: kko:Kkor_0593 hypothetical protein; PFAM: hypothetical protein; SPTR: C0N6C1 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2333)
YP_003807235.1	COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR004820:IPR014729:IPR011914:IPR004821; KEGG: cte:CT0209 cytidylyltransferase family protein; PFAM: cytidylyltransferase; SPTR: Q8KFW1 Cytidylyltransferase family protein; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain
YP_003807236.1	COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: ajs:Ajs_3540 ComF family protein; PFAM: phosphoribosyltransferase; SPTR: A1WBM8 ComF family protein; PFAM: phosphoribosyl transferase domain; TIGRFAM: comF family protein
YP_003807237.1	COGs: COG0538 isocitrate dehydrogenase; InterPro IPR001804:IPR019818; KEGG: dol:Dole_1908 isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: isocitrate dehydrogenase (NADP(+)); SPTR: A8ZSH5 isocitrate dehydrogenase [NADP]; PFAM: isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type
YP_003807238.1	InterPro IPR005358; KEGG: drt:Dret_1006 protein of unknown function UPF0153; PFAM: protein of unknown function UPF0153; SPTR: C8X1J7 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)
YP_003807239.1	COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286:IPR003084; KEGG: gme:Gmet_1739 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily; PRIAM: histone deacetylase; SPTR: Q39UV4 histone deacetylase superfamily; PFAM: histone deacetylase domain
YP_003807240.1	COGs: COG1610 conserved hypothetical protein; InterPro IPR019004:IPR003789; KEGG: fre:Franean1_0338 hypothetical protein; PFAM: Protein of unknown function; SPTR: A8LF59 Putative uncharacterized protein; PFAM: Yqey-like protein
YP_003807241.1	COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR000432:IPR002625:IPR005747:IPR007696; KEGG: pth:PTH_1939 mismatch repair ATPase; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2; SPTR: A5D0W6 MutS2 protein; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein
YP_003807242.1	COGs: COG0358 DNA primase; InterProIPR002694:IPR013264:IPR006171:IPR019475:IPR 005829:IPR006295:IPR006154; KEGG: gsu:GSU3090 DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase, DnaB-helicase binding domain; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; SPTR: Q748B7 DNA primase; TIGRFAM: DNA primase; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core
YP_003807243.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR007127:IPR009042:IPR007627:IPR007624:IPR 007630:IPR000943:IPR011991:IPR014284:IPR012760:IPR013325:I PR013324; KEGG: sfu:Sfum_1212 RpoD family RNA polymerase sigma factor; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; SPTR: A0LHK2 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 factor, region 1.1; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain
YP_003807244.1	COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR006674:IPR006261:IPR003607; KEGG: ade:Adeh_2590 deoxyguanosinetriphosphate triphosphohydrolase-like protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C8R019 Deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase
YP_003807245.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: dal:Dalk_0348 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: B8F925 Permease YjgP/YjgQ family protein; PFAM: Predicted permease YjgP/YjgQ family
YP_003807246.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: sat:SYN_00415 permease; PFAM: permease YjgP/YjgQ family protein; SPTR: Q2LSQ8 Permease; PFAM: Predicted permease YjgP/YjgQ family
YP_003807247.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006092:IPR006091:IPR006090:IPR006089:IPR 013786:IPR013764:IPR009100:IPR009075; KEGG: dal:Dalk_3776 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FLV9 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003807248.1	InterPro IPR001387:IPR013096:IPR014710:IPR011051; KEGG: dal:Dalk_3777 transcriptional regulator, XRE family; PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: B8FLW0 Transcriptional regulator, XRE family; PFAM: Cupin domain; Helix-turn-helix
YP_003807249.1	COGs: COG1703 Putative periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129:IPR003593; KEGG: ppd:Ppro_0389 LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: ATPase AAA; SPTR: A1AL03 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase
YP_003807250.1	COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; KEGG: scl:sce0893 hypothetical protein; SPTR: A9ETY3 Putative uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily
YP_003807251.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: dol:Dole_2557 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A8ZWN0 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003807252.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; SPTR: B8DK88 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box
YP_003807253.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006092:IPR006091:IPR006090:IPR006089:IPR 013786:IPR013764:IPR009100:IPR009075; KEGG: hoh:Hoch_3778 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: D0LYC8 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003807254.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753:IPR018376; KEGG: chy:CHY_1601 3-hydroxybutyryl-CoA dehydratase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: C0GKR8 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family
YP_003807255.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155:IPR016038:IPR016039; KEGG: cbe:Cbei_0411 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: A8U754 Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_003807256.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155:IPR016038:IPR016039; KEGG: dol:Dole_2187 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: A8ZUF9 Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_003807257.1	COGs: COG2378 transcriptional regulator protein; KEGG: sat:SYN_02988 transcriptional regulator; SPTR: Q2LX17 Transcriptional regulator
YP_003807258.1	COGs: COG2122 conserved hypothetical protein; InterPro IPR003374:IPR007183; KEGG: sfu:Sfum_2124 hypothetical protein; PFAM: ApbE family lipoprotein; SPTR: A0LK55 Putative uncharacterized protein; PFAM: ApbE family
YP_003807259.1	COGs: COG0622 phosphoesterase; InterPro IPR004843:IPR000979; KEGG: dal:Dalk_0913 phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; SPTR: Q2YZQ0 Putative uncharacterized protein; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family
YP_003807260.1	COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310:IPR011151:IPR011146; KEGG: sfu:Sfum_2126 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: A0LK57 Histidine triad (HIT) protein; PFAM: HIT domain
YP_003807261.1	KEGG: drt:Dret_1341 hypothetical protein; SPTR: C8X2I2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1049)
YP_003807262.1	COGs: COG2956 N-acetylglucosaminyl transferase; InterPro IPR001440:IPR019734:IPR013026:IPR011990; KEGG: mgm:Mmc1_0158 tetratricopeptide repeat protein; PFAM: hypothetical protein; SPTR: A0L3Z2 hypothetical protein
YP_003807263.1	COGs: COG0249 Mismatch repair ATPase (MutS family); InterProIPR007695:IPR007860:IPR007696:IPR007861:IPR 000432:IPR016151:IPR005748; KEGG: gem:GM21_2495 DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; SPTR: C6MKK7 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; manually curated; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS
YP_003807264.1	COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: drt:Dret_0142 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: C8WZG9 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes
YP_003807265.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dvl:Dvul_0562 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: Q727W0 High-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein; PFAM: Receptor family ligand binding region
YP_003807266.1	COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: dsa:Desal_2944 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C6C0P9 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003807267.1	COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dvm:DvMF_1164 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: B8DKF6 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003807268.1	COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: dvm:DvMF_1163 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B8DKF5 ABC transporter related; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter
YP_003807269.1	COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: dsa:Desal_2947 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C6C0Q2 ABC transporter related; PFAM: ABC transporter
YP_003807270.1	InterPro IPR000182:IPR016181; KEGG: bth:BT_1258  acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C0D719 Putative uncharacterized protein; PFAM: acetyltransferase (GNAT) family
YP_003807271.1	COGs: COG0104 Adenylosuccinate synthase; InterPro IPR001114:IPR018220; KEGG: dal:Dalk_2837 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: B8FB83 Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase
YP_003807272.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004090; KEGG: dal:Dalk_0574 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8FHJ1 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003807273.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR003661:IPR003594:IPR005467:IPR 000014:IPR004358:IPR009082; KEGG: cph:Cpha266_1787 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: A1BHC7 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003807274.1	InterPro IPR001387:IPR015927:IPR010982; KEGG: dvm:DvMF_1678  phage repressor; SMART: helix-turn-helix domain protein; SPTR: B8DLY0 Putative phage repressor
YP_003807275.1	KEGG: tgr:Tgr7_1417 outer membrane protein domain-containing protein; SPTR: Q0YQX8 Putative uncharacterized protein
YP_003807276.1	InterPro IPR013217; KEGG: dae:Dtox_2658 O-methyltransferase family 2; PFAM: methyltransferase type 12; SPTR: D1JGE4 Putative uncharacterized protein; PFAM: O-methyltransferase
YP_003807277.1	InterPro IPR013217; KEGG: dae:Dtox_2658 O-methyltransferase family 2; PFAM: methyltransferase type 12; SPTR: D1JGE4 Putative uncharacterized protein; PFAM: O-methyltransferase
YP_003807278.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR017871:IPR003593; KEGG: ele:Elen_1434 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C8WH12 ABC transporter related; PFAM: ABC transporter
YP_003807279.1	COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: ele:Elen_0314 cobalt transport protein; PFAM: cobalt transport protein; SPTR: D0YS34 Putative ABC transporter associated permease; PFAM: Cobalt transport protein
YP_003807280.1	InterPro IPR011733; KEGG: ele:Elen_0322 hypothetical protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein; SPTR: C7HSW0 Membrane protein; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185
YP_003807281.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_0342 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8F919 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003807282.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR000005:IPR018060:IPR012287:IPR020449:IPR 009057; KEGG: gvi:glr0326 AraC family transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Q7NNT4 AraC family transcriptional regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_003807283.1	COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: dal:Dalk_4457 protein of unknown function DUF486; PFAM: protein of unknown function DUF486; SPTR: B8FCH3 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF486
YP_003807284.1	InterPro IPR013216; KEGG: ote:Oter_0563 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: B1ZSJ6 methyltransferase type 11; PFAM: methyltransferase domain
YP_003807285.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR013767:IPR003661:IPR003594:IPR 001789:IPR005467:IPR000014:IPR000700:IPR004358:IPR003018:I PR001610:IPR011006:IPR009082; KEGG: dal:Dalk_0107 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; GAF domain protein; PAC repeat-containing protein; response regulator receiver; SPTR: B8FKK2 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003807286.1	Contains Selenocysteine; KEGG: dma:DMR_38750 hypothetical protein; SPTR: C4XN63 Putative uncharacterized protein; manually curated; PFAM: DsrE/DsrF-like family
YP_003807287.1	COGs: COG1893 Ketopantoate reductase; InterProIPR013332:IPR013752:IPR016040:IPR013328:IPR 003710:IPR008927; KEGG: hmo:HM1_2755 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; PRIAM: 2-dehydropantoate 2-reductase; SPTR: A1HPU2 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase
YP_003807288.1	COGs: COG0413 Ketopantoate hydroxymethyltransferase; InterPro IPR003700:IPR015813; KEGG: chy:CHY_2377 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: Q3A9L0 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_003807289.1	COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR020630:IPR020631:IPR016040:IPR000672; KEGG: dhd:Dhaf_3496 methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: methylenetetrahydrofolate dehydrogenase (NADP(+)); SPTR: B8FQ53 methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_003807290.1	COGs: COG3404 Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR007044; KEGG: hmo:HM1_1889 methenyltetrahydrofolate cyclohydrolase, PFAM: formiminotransferase-cyclodeaminase; SPTR: Q24UZ8 Putative uncharacterized protein; PFAM: formiminotransferase-cyclodeaminase
YP_003807291.1	COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: scl:sce2577 radical activating enzyme; PFAM: radical SAM domain protein; SPTR: A9G6T5 radical activating enzyme; PFAM: radical SAM superfamily
YP_003807292.1	KEGG: tro:trd_1922  cadherin domain/calx-beta domain protein; SPTR: C1MN99 Predicted protein
YP_003807293.1	KEGG: hut:Huta_1288 hypothetical protein; SPTR: A4A8V2 Sensory transduction protein lytR
YP_003807294.1	InterPro IPR011031; KEGG: sfu:Sfum_2550 hydroxylamine oxidase; SPTR: A0LLC6 hydroxylamine oxidase
YP_003807295.1	COGs: COG1528 ferritin-like protein; InterPro IPR008331:IPR009040:IPR012347:IPR009078; KEGG: sfu:Sfum_1965 ferritin, Dps family protein; PFAM: ferritin Dps family protein; PRIAM: ferroxidase; SPTR: A0LJP8 ferritin, Dps family protein; PFAM: ferritin-like domain
YP_003807296.1	InterProIPR008454:IPR008757:IPR018247:IPR018249:IPR 017683:IPR008969; KEGG: bbe:BBR47_51520 hypothetical protein; PFAM: peptidase M6 immune inhibitor A; Cna B domain protein; SPTR: C3AXM7 Secreted metalloprotease; TIGRFAM: M6 family metalloprotease domain protein; PFAM: Immune inhibitor A peptidase M6; TIGRFAM: M6 family metalloprotease domain
YP_003807297.1	KEGG: ele:Elen_0132 hypothetical protein; SPTR: C8WJC4 Putative uncharacterized protein
YP_003807298.1	KEGG: noc:Noc_0729 hypothetical protein; SPTR: Q3JD53 Putative uncharacterized protein
YP_003807299.1	COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482:IPR003593; KEGG: mca:MCA1114 general secretion pathway protein E; PFAM: type II secretion system protein E; SMART: ATPase AAA; SPTR: Q609W3 General secretion pathway protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: general secretory pathway protein E
YP_003807300.1	COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076:IPR003004; KEGG: acr:Acry_0892 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: A0Z1L3 General secretion pathway protein F; PFAM: Bacterial type II secretion system protein F domain
YP_003807301.1	COGs: COG2165 Type II secretory pathway pseudopilin PulG; InterProIPR012902:IPR013545:IPR001120:IPR000983:IPR 010054; KEGG: mca:MCA1116 general secretion pathway protein G; PFAM: type II secretion system protein G; SPTR: Q609W1 General secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain
YP_003807302.1	InterPro IPR012902:IPR001120; KEGG: eba:ebA1616 general secretion protein H; SPTR: Q5P6Q7 General secretion protein H; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003807303.1	InterPro IPR012902:IPR001120; KEGG: ctt:CtCNB1_0632 general secretion pathway protein I; SPTR: B8KPH1 General secretion pathway protein I; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003807304.1	InterPro IPR012902; KEGG: noc:Noc_0756 general secretion pathway protein J; SPTR: Q3JD27 General secretion pathway protein J; PFAM: Pseudopilin GspJ; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_003807305.1	COGs: COG3156 Type II secretory pathway component PulK; KEGG: dat:HRM2_30150 GspK2; SPTR: C0QK72 GspK2; PFAM: General secretion pathway protein K
YP_003807306.1	KEGG: cti:RALTA_B0204 exonuclease SbcC; SPTR: B2AI05 Exonuclease SbcC
YP_003807307.1	KEGG: pol:Bpro_0175 17 kDa surface antigen; SPTR: Q12H52 17 kDa surface antigen
YP_003807308.1	KEGG: mno:Mnod_1789 hypothetical protein; SPTR: B8IR77 Putative uncharacterized protein
YP_003807309.1	InterPro IPR000045; KEGG: bbr:BB0792 type 4 prepilin-like proteins leader peptide processing enzyme; PFAM: peptidase A24A prepilin type IV; SPTR: A3W196 peptidase A24A-like; PFAM: Type IV leader peptidase family
YP_003807310.1	COGs: COG1450 Type II secretory pathway component PulD; InterProIPR005644:IPR004846:IPR004845:IPR001775:IPR 013356; KEGG: dat:HRM2_30110 GspD2; PFAM: type II and III secretion system protein; NolW domain protein; SPTR: C5S7Y5 General secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D
YP_003807311.1	KEGG: gem:GM21_2663 Ig-like, group 1; SPTR: C6E0S5 Ig-like, group 1
YP_003807312.1	COGs: COG0588 phosphoglycerate mutase 1; InterPro IPR013078:IPR001345:IPR005952; KEGG: mmr:Mmar10_2498 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; PRIAM: phosphoglycerate mutase; SPTR: Q0ALQ9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase family; TIGRFAM: phosphoglycerate mutase, BPG-dependent, family 1
YP_003807313.1	KEGG: syn:sll7067 hypothetical protein; SPTR: Q6ZED1 Putative uncharacterized protein sll7067
YP_003807314.1	InterPro IPR005537; KEGG: syn:sll7066 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Q6ZED2 Putative uncharacterized protein sll7066; PFAM: RAMP superfamily
YP_003807315.1	COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537; KEGG: syn:sll7065 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Q6ZED3 Putative uncharacterized protein sll7065; PFAM: RAMP superfamily
YP_003807316.1	KEGG: syn:sll7064 hypothetical protein; SPTR: Q6ZED4 Putative uncharacterized protein sll7064
YP_003807317.1	InterPro IPR005537; KEGG: syn:sll7063 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: B5WA38 Putative uncharacterized protein; PFAM: RAMP superfamily
YP_003807318.1	InterPro IPR010462:IPR014710:IPR011051; KEGG: hch:HCH_01508 L-ectoine synthase; PFAM: ectoine synthase; PRIAM: ectoine synthase; SPTR: Q2SLV8 L-ectoine synthase; PFAM: ectoine synthase
YP_003807319.1	COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterProIPR005814:IPR001917:IPR015421:IPR004637:IPR 012773:IPR015424; KEGG: hch:HCH_01509 diaminobutyrate--2-oxoglutarate aminotransferase; PFAM: aminotransferase class-III; SPTR: Q4JQJ4 L-2,4-diaminobutyrat transaminase; TIGRFAM: diaminobutyrate/2-oxoglutarate aminotransferase; 2,4-diaminobutyrate 4-transaminase; PFAM: Aminotransferase class-III; TIGRFAM: 2,4-diaminobutyrate 4-transaminases; diaminobutyrate--2-oxoglutarate aminotransferase
YP_003807320.1	InterPro IPR000182:IPR016181:IPR012772; KEGG: bav:BAV2374 L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; PRIAM: Diaminobutyrate acetyltransferase; SPTR: Q2KY16 L-2,4-diaminobutyric acid acetyltransferase; TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: acetyltransferase (GNAT) family; TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase
YP_003807321.1	COGs: COG0498 Threonine synthase; InterPro IPR001926:IPR000634:IPR004450; KEGG: dal:Dalk_4397 threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; PRIAM: Threonine synthase; SPTR: B8FNA7 Threonine synthase; TIGRFAM: threonine synthase; PFAM: pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase
YP_003807322.1	InterPro IPR006683; KEGG: tye:THEYE_A0630 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: B5YJQ8 Putative uncharacterized protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003807323.1	COGs: COG1576 conserved hypothetical protein; InterPro IPR003742; KEGG: rbi:RB2501_00091 hypothetical protein; PFAM: protein of unknown function DUF163; SPTR: A4CNG1 Putative uncharacterized protein; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: conserved hypothetical protein TIGR00246
YP_003807324.1	InterPro IPR005561:IPR011991:IPR011006; KEGG: gau:GAU_0397 two-component response regulator; PFAM: ANTAR domain protein; SPTR: C0GKN6 Response regulator receiver and ANTAR domain protein; PFAM: ANTAR domain
YP_003807325.1	COGs: COG3920 Signal transduction histidine kinase; InterPro IPR003594; KEGG: tro:trd_0267 probable two component sensor kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: B9KXS9 Probable two component sensor kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; HWE histidine kinase
YP_003807326.1	COGs: COG0694 thioredoxin-like protein and domains; InterPro IPR001075; KEGG: sat:SYN_02452 NifU-like domain-containing protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: C0GLY6 Nitrogen-fixing NifU domain protein; PFAM: NifU-like domain
YP_003807327.1	COGs: COG0152 phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR001636:IPR018236:IPR013816; KEGG: glo:Glov_3047 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: B3E940 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_003807328.1	COGs: COG0039 Malate/lactate dehydrogenase; InterProIPR001236:IPR001557:IPR016040:IPR015955:IPR 011275; KEGG: dal:Dalk_0818 malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; SPTR: B8FHV6 Malate dehydrogenase, NAD-dependent; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent
YP_003807329.1	COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667; KEGG: dol:Dole_0370 phosphoesterase domain-containing protein; PFAM: phosphoesterase RecJ domain protein; SPTR: A8ZT16 phosphoesterase RecJ domain protein; PFAM: DHH family
YP_003807330.1	COGs: COG5016 pyruvate/oxaloacetate carboxyltransferase; InterPro IPR000891:IPR003379:IPR013785; KEGG: dat:HRM2_31800 Pcb; PFAM: carboxylase; pyruvate carboxyltransferase; SPTR: C0QLF7 Pcb; PFAM: HMGL-like; Conserved carboxylase domain
YP_003807331.1	InterPro IPR012335:IPR012336; KEGG: sfu:Sfum_3604 thioredoxin domain-containing protein; SPTR: A0LPC2 thioredoxin domain; PFAM: thioredoxin
YP_003807332.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017:IPR009051; KEGG: dol:Dole_0768 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A8ZVB7 Putative uncharacterized protein; PFAM: Cysteine-rich domain
YP_003807333.1	COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR006094:IPR004113:IPR016166:IPR016167:IPR 016168:IPR016164; KEGG: dol:Dole_0769 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase domain protein; SPTR: A8ZVB8 FAD linked oxidase domain protein; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain
YP_003807334.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017:IPR017900; KEGG: dol:Dole_0770 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A8ZVB9 Putative uncharacterized protein; PFAM: Cysteine-rich domain
YP_003807335.1	KEGG: dps:DP0753 hypothetical protein; SPTR: C8QY26 Putative uncharacterized protein
YP_003807336.1	InterPro IPR004843:IPR011152; KEGG: sfu:Sfum_2718 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: A0LLU4 Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase
YP_003807337.1	COGs: COG0515 serine/threonine protein kinase; InterProIPR017442:IPR011460:IPR002052:IPR017441:IPR 008271:IPR000719:IPR020635:IPR002290:IPR011009; KEGG: dde:Dde_3468 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; protein of unknown function DUF1566; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: Q30VN5 serine/threonine protein kinase; PFAM: Protein kinase domain; Protein of unknown function (DUF1566)
YP_003807338.1	COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR008254:IPR010089; KEGG: eba:ebA2303 TrpR binding protein WrbA; PFAM: flavodoxin/nitric oxide synthase; SPTR: Q5P5L5 Flavoprotein wrbA; TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; TIGRFAM: NAD(P)H:quinone oxidoreductase, type IV
YP_003807339.1	KEGG: mvu:Metvu_0900 hypothetical protein; SPTR: C9RGQ6 Putative uncharacterized protein
YP_003807341.1	COGs: COG0282 Acetate kinase; InterPro IPR000890:IPR004372; KEGG: dal:Dalk_3906 acetate kinase; PFAM: acetate and butyrate kinase; SPTR: B8FJC3 Acetate kinase; TIGRFAM: acetate kinase; PFAM: Acetokinase family; TIGRFAM: acetate kinase
YP_003807342.1	COGs: COG0280 phosphotransacetylase; InterProIPR010766:IPR002505:IPR002114:IPR016475:IPR 004614; KEGG: dvm:DvMF_1864 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein; SPTR: B8DMG4 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: DRTGG domain; phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase; glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
YP_003807343.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR004839:IPR004838:IPR015421:IPR015422:IPR 015424; KEGG: sfu:Sfum_1219 aminotransferase, class I and II; PFAM: aminotransferase class I and II; SPTR: A0LHK9 Aminotransferase; PFAM: Aminotransferase class I and II
YP_003807344.1	COGs: COG0460 Homoserine dehydrogenase; InterProIPR005106:IPR001342:IPR002912:IPR019811:IPR 016204:IPR016040; KEGG: gsu:GSU1693 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; SPTR: Q74CI0 Homoserine dehydrogenase; PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain; ACT domain
YP_003807345.1	COGs: COG3635 phosphoglycerate mutase AP superfamily; InterProIPR019304:IPR006124:IPR004456:IPR013371:IPR 017850; KEGG: pca:Pcar_1514 cofactor-independent phosphoglycerate mutase; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein; PRIAM: phosphoglycerate mutase; SPTR: Q3A4E7 phosphoglycerate mutase; TIGRFAM: proposed homoserine kinase; phosphonopyruvate decarboxylase-related protein; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Metalloenzyme superfamily; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form; proposed homoserine kinase
YP_003807346.1	COGs: COG0824 thioesterase; InterPro IPR006683:IPR006684; KEGG: ade:Adeh_1639 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; SPTR: Q2IID3 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; TIGRFAM: conserved hypothetical protein TIGR00051; tol-pal system-associated acyl-CoA thioesterase
YP_003807347.1	COGs: COG0574 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterProIPR002192:IPR008279:IPR000121:IPR018274:IPR 010121:IPR013815:IPR013816:IPR015813; KEGG: gsu:GSU0580 pyruvate phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; PRIAM: pyruvate, phosphate dikinase; SPTR: Q74FM6 pyruvate phosphate dikinase; TIGRFAM: pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase
YP_003807348.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterProIPR013751:IPR013747:IPR016038:IPR004655:IPR 016039; KEGG: tte:TTE1475 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: A1HN89 3-oxoacyl-(Acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_003807349.1	KEGG: pag:PLES_29051 PvdE; SPTR: B7V8R8 PvdE
YP_003807350.1	COGs: COG2041 Sulfite oxidase; InterPro IPR000572; KEGG: afw:Anae109_4218 oxidoreductase molybdopterin binding; PFAM: oxidoreductase molybdopterin binding; SPTR: C0GHN9 Oxidoreductase molybdopterin binding; PFAM: Oxidoreductase molybdopterin binding domain
YP_003807351.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: dal:Dalk_0799 beta-lactamase domain protein; SPTR: B8FHT7 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003807352.1	COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003660:IPR010822:IPR001932; KEGG: dae:Dtox_0924 protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; SPTR: C8W350 Protein serine/threonine phosphatase; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE)
YP_003807353.1	COGs: COG1592 Rubrerythrin; KEGG: chy:CHY_0738 rubrerythrin; SPTR: D0Y5T7 Rubrerythrin
YP_003807354.1	InterProIPR001789:IPR001440:IPR013105:IPR019734:IPR 013026:IPR011990:IPR006597:IPR011006; KEGG: dat:HRM2_46700 TPR-repeat-containing protein with CheY-like receiver; PFAM: response regulator receiver; hypothetical protein; hypothetical protein; SMART: response regulator receiver; Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein; SPTR: C0QGE7 TPR-repeat-containing protein with CheY-like receiver; PFAM: Response regulator receiver domain; Tetratricopeptide repeat
YP_003807355.1	InterPro IPR015011; KEGG: sfu:Sfum_0182 hypothetical protein; SPTR: A0LEN2 Putative uncharacterized protein; PFAM: Archaea-specific editing domain of threonyl-tRNA synthetase
YP_003807356.1	COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: dma:DMR_42640 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: C4XQM1 Putative uncharacterized protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003807357.1	COGs: COG0469 pyruvate kinase; InterProIPR015793:IPR015794:IPR015813:IPR001697:IPR 015795:IPR011037; KEGG: gau:GAU_1104 pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta; PRIAM: pyruvate kinase; SPTR: Q1K4D5 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase, barrel domain; pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase
YP_003807358.1	KEGG: dsa:Desal_0956 hypothetical protein; SPTR: C6BZW4 Putative uncharacterized protein
YP_003807359.1	COGs: COG1247 Sortase and related acyltransferase; InterPro IPR013216:IPR000182:IPR016181; KEGG: mma:MM_1902 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; methyltransferase type 11; SPTR: Q8PVR0 Putative uncharacterized protein; PFAM: acetyltransferase (GNAT) family
YP_003807360.1	COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR011704:IPR003593; KEGG: adg:Adeg_0556 magnesium chelatase; PFAM: ATPase associated with various cellular activities AAA_5; PRIAM: Magnesium chelatase; SMART: ATPase AAA; SPTR: C9RBS7 Magnesium chelatase; PFAM: Magnesium chelatase, subunit ChlI
YP_003807361.1	COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR000523:IPR002035:IPR003593; KEGG: dau:Daud_1209 magnesium chelatase; PFAM: von Willebrand factor type A; magnesium chelatase ChlI subunit; PRIAM: Magnesium chelatase; SMART: von Willebrand factor type A; ATPase AAA; SPTR: B1I3V2 Magnesium chelatase; PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain
YP_003807362.1	COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterPro IPR006137:IPR001821:IPR017909:IPR006311; KEGG: dal:Dalk_2275 hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; PRIAM: cytochrome-c3 hydrogenase; SPTR: B8FIH8 Hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; hydrogenase (NiFe) small subunit (hydA)
YP_003807363.1	COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501:IPR018194; KEGG: dal:Dalk_2276 nickel-dependent hydrogenase large subunit; PFAM: nickel-dependent hydrogenase large subunit; SPTR: B8FIH9 Nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase
YP_003807364.1	COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: sfu:Sfum_2951 hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; SPTR: A0LMH3 Hydrogenase expression/formation protein; TIGRFAM: hydrogenase maturation protease; PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease
YP_003807365.1	COGs: COG0298 Hydrogenase maturation factor; InterPro IPR001109; KEGG: dal:Dalk_2278 hydrogenase assembly chaperone HypC/HupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); SPTR: B8FII1 Hydrogenase assembly chaperone hypC/hupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF
YP_003807366.1	KEGG: npu:Npun_CR034 XRE family transcriptional regulator; SPTR: B2JBS1 Transcriptional regulator, XRE family; PFAM: Nin one binding (NOB1) Zn-ribbon like
YP_003807367.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR003593:IPR 011006:IPR009057; KEGG: gur:Gura_2708 two component, sigma-54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: A5G514 Putative two component, sigma-54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003807368.1	KEGG: sfu:Sfum_1272 hypothetical protein; SPTR: A0LHR2 Putative uncharacterized protein
YP_003807369.1	COGs: COG0328 ribonuclease HI; InterPro IPR002156:IPR012337; KEGG: mxa:MXAN_5728 ribonuclease H; PFAM: ribonuclease H; SPTR: Q098P5 RNase H; PFAM: RNase H
YP_003807370.1	COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: sfu:Sfum_1209 hypothetical protein; PFAM: protein of unknown function DUF164; SPTR: A0LHK0 Putative uncharacterized protein; PFAM: Putative zinc ribbon domain
YP_003807371.1	COGs: COG0327 conserved hypothetical protein; InterPro IPR002678:IPR017221:IPR011322; KEGG: sth:STH598 hypothetical protein; PFAM: protein of unknown function DUF34; SPTR: Q67RW0 Putative uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: conserved hypothetical protein TIGR00486
YP_003807372.1	COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: shi:Shel_26550 predicted TIM-barrel fold metal-dependent hydrolase; PFAM: amidohydrolase 2; SPTR: B0MKA2 Putative uncharacterized protein; manually curated; PFAM: Amidohydrolase
YP_003807373.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR018212:IPR004090; KEGG: drt:Dret_2373 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: C8X5F8 methyl-accepting chemotaxis sensory transducer; PFAM: Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003807374.1	COGs: COG0495 Leucyl-tRNA synthetase; InterProIPR015945:IPR013155:IPR001412:IPR014729:IPR 002302:IPR009008:IPR009080; KEGG: glo:Glov_2116 leucyl-tRNA synthetase; PFAM: tRNA synthetase valyl/leucyl anticodon-binding; Arginyl-tRNA synthetase, class Ic, core; SPTR: B3E3L3 Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family
YP_003807375.1	KEGG: sat:SYN_02375 hypothetical protein; SPTR: Q2LQK6 Hypothetical membrane protein
YP_003807376.1	COGs: COG1466 DNA polymerase III subunit delta; InterPro IPR010372:IPR005790:IPR008921; KEGG: gur:Gura_3132 DNA polymerase III, subunit delta; PFAM: DNA polymerase III delta; SPTR: A5G675 DNA polymerase III, subunit delta; TIGRFAM: DNA polymerase III, subunit delta; PFAM: DNA polymerase III, subunit delta; TIGRFAM: DNA polymerase III, subunit delta
YP_003807377.1	COGs: COG0268 ribosomal protein S20; InterPro IPR002583; KEGG: gme:Gmet_2297 30S ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: Q39TA2 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; TIGRFAM: ribosomal protein S20
YP_003807378.1	COGs: COG0728 membrane protein  virulence factor; InterPro IPR004268; KEGG: dal:Dalk_4414 integral membrane protein MviN; PFAM: virulence factor MVIN family protein; SPTR: B8FNC4 Integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN
YP_003807379.1	KEGG: dol:Dole_0562 hypothetical protein; SPTR: A8ZU60 Putative uncharacterized protein
YP_003807380.1	COGs: COG4623 soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; InterPro IPR008258:IPR000189; KEGG: drm:Dred_2511 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase catalytic; SPTR: A4J7G8 Lytic transglycosylase, catalytic; PFAM: Transglycosylase SLT domain
YP_003807381.1	COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: ade:Adeh_3846 microcin-processing peptidase 2; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Q2IGA1 Putative uncharacterized protein; PFAM: Putative modulator of DNA gyrase
YP_003807382.1	COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: afw:Anae109_3957 peptidase U62 modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: A7HHD9 peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase
YP_003807383.1	KEGG: dps:DP0712 hypothetical protein; SPTR: Q6AQD2 Putative uncharacterized protein; PFAM: Putative exonuclease, RdgC
YP_003807384.1	KEGG: dal:Dalk_3852 hypothetical protein; SPTR: B8FCC0 Putative uncharacterized protein
YP_003807385.1	KEGG: GPRMTHL1; methuselah-like (AGAP006215-PA); SPTR: Q7PNU0 Methuselah-like (AGAP006215-PA)
YP_003807386.1	KEGG: dma:DMR_34630 hypothetical protein; SPTR: C4XKL4 Putative uncharacterized protein
YP_003807387.1	KEGG: cyt:cce_1756 hypothetical protein; SPTR: B1WYT9 Putative uncharacterized protein
YP_003807388.1	COGs: COG0131 imidazoleglycerol-phosphate dehydratase; InterPro IPR000807:IPR020565:IPR020568; KEGG: gyc:GYMC61_3155 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; PRIAM: imidazoleglycerol-phosphate dehydratase; SPTR: C9RV81 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase
YP_003807389.1	KEGG: sat:SYN_00762 hypothetical protein; SPTR: Q2LVF6 Hypothetical membrane protein
YP_003807390.1	COGs: COG0106 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; InterPro IPR006062:IPR013785:IPR006063:IPR011060; KEGG: avn:Avin_04620 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: Q0EX95 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
YP_003807391.1	InterPro IPR007202; KEGG: dae:Dtox_3052 Fe-S cluster domain protein; PFAM: Fe-S cluster domain protein; SPTR: C8W3L8 Fe-S cluster domain protein; PFAM: Putative Fe-S cluster
YP_003807392.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: sfu:Sfum_0112 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A0LEG3 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003807393.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR017940:IPR 003593:IPR011527; KEGG: dal:Dalk_3747 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: B8FLT0 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003807394.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR017940:IPR 003593:IPR011527; KEGG: dal:Dalk_3748 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: B8FLT1 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003807395.1	COGs: COG0526 thiol-disulfide isomerase and thioredoxins; InterPro IPR000866:IPR017936:IPR012335:IPR012336; KEGG: rmr:Rmar_1898 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; SPTR: D0MJX3 Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family
YP_003807396.1	COGs: COG0557 exoribonuclease R; InterPro IPR001900; KEGG: dal:Dalk_3638 exoribonuclease II; PFAM: ribonuclease II; PRIAM: exoribonuclease II; SPTR: B8FGU6 exoribonuclease II; PFAM: RNB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases
YP_003807397.1	COGs: COG3467 flavin-nucleotide-binding protein; InterPro IPR011576:IPR012349:IPR009002; KEGG: dma:DMR_07650 hypothetical protein; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: C4XJ92 Putative uncharacterized protein; PFAM: Pyridoxamine 5'-phosphate oxidase
YP_003807398.1	COGs: COG0438 glycosyltransferase; KEGG: csa:Csal_2123 glycosyl transferase, group 1; SPTR: A6G2P4 glycosyl transferase, group 1; manually curated; PFAM: glycosyl transferases group 1; Domain of unknown function (DUF3524)
YP_003807399.1	COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR001451:IPR011004; KEGG: dps:DP2923 bifunctional GlmU protein; SPTR: C0GCM6 Bifunctional GlmU protein
YP_003807400.1	COGs: COG0107 imidazoleglycerol-phosphate synthase; InterPro IPR006062:IPR013785:IPR004651:IPR011060; KEGG: dol:Dole_0783 imidazole glycerol phosphate synthase subunit HisF; PFAM: histidine biosynthesis protein; SPTR: A8ZVD2 Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit
YP_003807401.1	COGs: COG0118 Glutamine amidotransferase; InterPro IPR000991:IPR016226:IPR017926:IPR010139; KEGG: dal:Dalk_3651 imidazole glycerol phosphate synthase subunit HisH; PFAM: glutamine amidotransferase class-I; SPTR: B8FGV9 Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
YP_003807402.1	COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR001440:IPR019734:IPR013026:IPR011990; KEGG: dsa:Desal_2816 tetratricopeptide TPR_2 repeat protein; PFAM: hypothetical protein; SPTR: C6BZZ7 hypothetical protein; PFAM: Tetratricopeptide repeat
YP_003807403.1	COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: bcv:Bcav_2296 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: C5BVU6 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_003807404.1	COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; InterPro IPR002218:IPR020595:IPR013027:IPR004416; KEGG: dba:Dbac_2050 glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; SPTR: C7LNG7 Glucose inhibited division protein A; TIGRFAM: glucose inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A
YP_003807405.1	COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: pwa:Pecwa_2047 protein of unknown function DUF218; PFAM: protein of unknown function DUF218; SPTR: D0KBS4 Putative uncharacterized protein; PFAM: DUF218 domain
YP_003807406.1	InterPro IPR002842; KEGG: bfs:BF2749  V-type ATP synthase subunit E; PFAM: H+transporting two-sector ATPase E subunit; SPTR: D0TNN5 ATP synthase subunit E
YP_003807407.1	KEGG: bth:BT_1300 hypothetical protein; SPTR: A7V2L2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2764)
YP_003807408.1	COGs: COG1155 H+-ATPase subunit A; InterProIPR004100:IPR000194:IPR020003:IPR019825:IPR 018118:IPR000793; KEGG: bbu:BB0094 V-type ATP synthase subunit A; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SPTR: C0T025 V-type ATP synthase alpha chain; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain
YP_003807409.1	COGs: COG1156 H+-ATPase subunit B; InterPro IPR004100:IPR000194; KEGG: bre:BRE_95 V-type ATP synthase subunit B; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SPTR: A6PSE7 Sodium-transporting two-sector ATPase; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain
YP_003807410.1	COGs: COG1394 H+-ATPase subunit D; InterPro IPR002699; KEGG: fsu:Fisuc_2839 V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit; SPTR: Q1Q3P2 Putative uncharacterized protein; TIGRFAM: V-type ATPase, D subunit; PFAM: ATP synthase subunit D; TIGRFAM: H(+)-transporting ATP synthase, vacuolar type, subunit D
YP_003807411.1	COGs: COG1269 H+-ATPase subunit I; InterPro IPR002490; KEGG: bvu:BVU_3562  V-type ATP synthase subunit I; PFAM: V-type ATPase 116 kDa subunit; SPTR: A0P1I3 V-type ATP synthase subunit I; PFAM: V-type ATPase 116kDa subunit family
YP_003807412.1	InterPro IPR002379; KEGG: pcu:pc1676 V-type ATP synthase subunit K; PFAM: H+transporting two-sector ATPase C subunit; SPTR: Q6MAJ9 Putative V-type sodium ATP synthase subunit K (NtpK); PFAM: ATP synthase subunit C
YP_003807413.1	KEGG: dal:Dalk_4915 hypothetical protein; SPTR: B8FDG0 Putative uncharacterized protein
YP_003807414.1	KEGG: sgr:SGR_3956  two-component system sensor kinase; SPTR: B5H5J4 Sensor protein
YP_003807415.1	KEGG: nph:NP2724A isochorismate synthase; SPTR: C8TJH7 Putative side tail fiber protein
YP_003807416.1	COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR008881:IPR001179:IPR008880:IPR005215; KEGG: nth:Nther_1101 trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; SPTR: C6MN07 Trigger factor; TIGRFAM: trigger factor; PFAM: Bacterial trigger factor protein (TF) C-terminus; Bacterial trigger factor protein (TF); TIGRFAM: trigger factor
YP_003807417.1	COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907:IPR018215; KEGG: gem:GM21_3011 ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; PRIAM: Endopeptidase Clp; SPTR: C6E2T0 ATP-dependent Clp protease proteolytic subunit; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP
YP_003807418.1	COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterProIPR010603:IPR013093:IPR019489:IPR004487:IPR 003593; KEGG: sfu:Sfum_0099 ATP-dependent protease ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; Clp ATPase-like; SMART: ATPase AAA; SPTR: A0LEF0 ATP-dependent Clp protease ATP-binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX)
YP_003807419.1	COGs: COG0466 ATP-dependent Lon protease; InterProIPR003111:IPR003959:IPR008269:IPR008268:IPR 001984:IPR004815:IPR003593:IPR020568; KEGG: acp:A2cp1_3496 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; ATPase AAA; SPTR: B8J5G4 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related  ATP-dependent protease; ATP-dependent protease La
YP_003807420.1	KEGG: swo:Swol_1771 hypothetical protein; SPTR: Q0AW35 Putative uncharacterized protein
YP_003807421.1	InterPro IPR003660; KEGG: gem:GM21_0283  sensor with HAMP domain; PFAM: histidine kinase HAMP region domain protein; SPTR: C6DY92 Putative sensor with HAMP domain; PFAM: HAMP domain; Protein of unknown function (DUF3365)
YP_003807422.1	COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR001185:IPR019823; KEGG: sat:SYN_01974 large-conductance mechanosensitive channel; PFAM: large-conductance mechanosensitive channel; SPTR: Q2LUI9 Large-conductance mechanosensitive channel; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein
YP_003807423.1	InterPro IPR013229:IPR011990; KEGG: dol:Dole_1853 hypothetical protein; PFAM: PEGA domain protein; SPTR: A8ZSC0 hypothetical protein; PFAM: PEGA domain
YP_003807424.1	InterPro IPR004827; KEGG: fal:FRAAL5152 dihydrolipoamide succinyltransferase, component of 2-oxoglutarate dehydrogenase complex (E2); SPTR: C0GSJ8 Ankyrin
YP_003807425.1	KEGG: dat:HRM2_08280 hypothetical protein; SPTR: C0QJT8 Putative uncharacterized protein
YP_003807426.1	InterPro IPR002035; KEGG: dat:HRM2_08320 predicted serine/threonine protein kinase PpkA; SPTR: C0QJU2 Predicted serine/threonine protein kinase PpkA
YP_003807427.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: dat:HRM2_08310 ABC-type transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C0QJU1 ABC-type transporter, ATP-binding protein; PFAM: ABC transporter
YP_003807428.1	KEGG: dat:HRM2_08300 ABC transporter permease; SPTR: C0QJU0 ABC transporter permease
YP_003807429.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dat:HRM2_08300 ABC transporter permease; PFAM: protein of unknown function DUF214; SPTR: C0QJU0 ABC transporter permease; PFAM: Predicted permease
YP_003807430.1	COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: dat:HRM2_08290 hypothetical protein; PFAM: protein of unknown function DUF323; SPTR: C0QJT9 Putative uncharacterized protein; PFAM: formylglycine-generating sulfatase enzyme
YP_003807431.1	InterPro IPR008816; KEGG: dat:HRM2_08270 hypothetical protein; PFAM: 17 kDa surface antigen; SPTR: C0QJT7 Putative uncharacterized protein
YP_003807432.1	KEGG: dat:HRM2_08260 serine/threonine-protein kinase MRCK alpha (CDC42-binding protein kinase alpha); SPTR: C0QJT6 serine/threonine-protein kinase MRCK alpha (CDC42-binding protein kinase alpha)
YP_003807433.1	COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151; KEGG: dat:HRM2_08250 CtpA1; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: C0QJT5 CtpA1; PFAM: peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_003807434.1	COGs: COG1162 GTPase; InterPro IPR004881:IPR010914; KEGG: dsa:Desal_0179 ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; SPTR: C6BVN5 ribosome small subunit-dependent GTPase A; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A
YP_003807435.1	COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023; KEGG: gur:Gura_2976 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PRIAM: 3-deoxy-manno-octulosonate-8-phosphatase; SPTR: A5G5T0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA
YP_003807436.1	COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006218:IPR013785:IPR006269; KEGG: dsa:Desal_2260 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-8-phosphooctulonate synthase; SPTR: C6BWN6 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase
YP_003807437.1	COGs: COG0504 CTP synthase (UTP-ammonia lyase); InterPro IPR017456:IPR000991:IPR017926:IPR004468; KEGG: dal:Dalk_0804 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; PRIAM: CTP synthase; SPTR: B8FHU2 CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase
YP_003807438.1	COGs: COG0517 FOG: CBS domain; InterPro IPR000644:IPR013785; KEGG: sfu:Sfum_2076 signal-transduction protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: C8QYZ4 Putative signal transduction protein with CBS domains; PFAM: CBS domain
YP_003807439.1	COGs: COG1606 ATP-utilizing protein of the PP-loop superfamily; InterPro IPR005232:IPR014729; KEGG: pca:Pcar_2431 hypothetical protein; SPTR: Q3A1T7 Putative uncharacterized protein; PFAM: Asparagine synthase; TIGRFAM: conserved hypothetical protein TIGR00268
YP_003807440.1	KEGG: IL16; interleukin 16 (lymphocyte chemoattractant factor); SPTR: A1ZZJ3 Lipoprotein
YP_003807441.1	COGs: COG0297 glycogen synthase; InterPro IPR013534:IPR001296:IPR011835; KEGG: sus:Acid_0307 glycogen/starch synthases, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; PRIAM: Starch synthase; SPTR: B4D6N7 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain; glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type
YP_003807442.1	KEGG: sen:SACE_6963 hypothetical protein; SPTR: A3QTM7 ORF68
YP_003807443.1	COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: hbu:Hbut_0038 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: C8QWH8 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family
YP_003807444.1	InterPro IPR008985; KEGG: ami:Amir_4870 LamG domain protein jellyroll fold domain protein; SPTR: C6WQK6 LamG domain protein jellyroll fold domain protein
YP_003807445.1	KEGG: dal:Dalk_0095 hypothetical protein; SPTR: B8FKJ0 Putative uncharacterized protein
YP_003807446.1	COGs: COG2331 conserved hypothetical protein; InterPro IPR013429; KEGG: dal:Dalk_4244 regulatory protein, FmdB family; PFAM: regulatory protein FmdB; SPTR: B8FM88 Regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM:  regulatory protein, FmdB family
YP_003807447.1	KEGG: sat:SYN_01922  cytoplasmic protein; SPTR: Q2LUL0 Hypothetical cytosolic protein
YP_003807448.1	COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: sfu:Sfum_3557 silent information regulator protein Sir2; PFAM: Silent information regulator protein Sir2; SPTR: A0LP75 Silent information regulator protein Sir2; PFAM: Sir2 family
YP_003807449.1	COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: rmr:Rmar_1448 protein of unknown function DUF62; PFAM: protein of unknown function DUF62; SPTR: Q02BF9 Putative uncharacterized protein; PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase
YP_003807450.1	KEGG: dvm:DvMF_0847 hypothetical protein; SPTR: B8DNX1 Putative uncharacterized protein
YP_003807451.1	KEGG: sml:Smlt3164 hypothetical protein; SPTR: B8L4U1 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2939)
YP_003807452.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR003661:IPR003594:IPR005467:IPR 000014:IPR000700:IPR004358:IPR001610:IPR009082; KEGG: dma:DMR_41550 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase A domain protein; SPTR: C4XPU6 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003807453.1	COGs: COG0372 Citrate synthase; InterProIPR002020:IPR019810:IPR016142:IPR010953:IPR 016141; KEGG: dal:Dalk_4974 citrate synthase I; PFAM: Citrate synthase; PRIAM: Citrate (Si)-synthase; SPTR: B8FDL5 Citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type)
YP_003807454.1	COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136:IPR013785; KEGG: dal:Dalk_0105 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase NPD; SPTR: B8FKK0 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase
YP_003807455.1	COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022:IPR011762:IPR011763; KEGG: dal:Dalk_2022 carboxyl transferase; PFAM: carboxyl transferase; SPTR: B8FG38 carboxyl transferase; PFAM: carboxyl transferase domain
YP_003807456.1	COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: xau:Xaut_0582 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: A7ICU5 Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003807457.1	InterPro IPR002145; KEGG: sus:Acid_5575 hypothetical protein; PFAM: CopG domain protein DNA-binding domain protein; SPTR: C0E1A0 Putative uncharacterized protein; PFAM: Ribbon-helix-helix protein, copG family
YP_003807458.1	COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR011032:IPR016040; KEGG: dma:DMR_23620 dehydrogenase; PFAM: alcohol dehydrogenase GroES domain protein; SPTR: C4XSN1 Dehydrogenase; PFAM: alcohol dehydrogenase GroES-like domain
YP_003807459.1	COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325; KEGG: gme:Gmet_0042  cyclase; PFAM: cyclase family protein; PRIAM: Arylformamidase; SPTR: Q39ZN2 Putative cyclase; PFAM: Putative cyclase
YP_003807460.1	COGs: COG0815 Apolipoprotein N-acyltransferase; InterPro IPR003010:IPR004563; KEGG: dol:Dole_1768 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: A9A0U7 Apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase
YP_003807461.1	COGs: COG3065 Starvation-inducible outer membrane lipoprotein; InterPro IPR004658; KEGG: sat:SYN_00736 outer membrane protein Slp precursor; PFAM: outer membrane lipoprotein Slp; SPTR: Q2LVC8 Outer membrane protein slp; PFAM: Outer membrane lipoprotein Slp family; TIGRFAM: outer membrane lipoprotein, Slp family
YP_003807462.1	COGs: COG2271 Sugar phosphate permease; InterPro IPR011701:IPR001484:IPR016196; KEGG: dol:Dole_2623 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8ZWU5 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003807463.1	KEGG: sun:SUN_2384 hypothetical protein; SPTR: A6QCW1 Putative uncharacterized protein
YP_003807464.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006090:IPR013764:IPR009075:IPR009100; KEGG: sse:Ssed_3347 acyl-CoA dehydrogenase-like protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C0GJ79 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain
YP_003807465.1	InterPro IPR013216; KEGG: sfu:Sfum_0224 hypothetical protein; PFAM: methyltransferase type 11; SPTR: A0LES3 Putative uncharacterized protein; PFAM: methyltransferase domain
YP_003807466.1	COGs: COG2186 Transcriptional regulators; InterPro IPR000524:IPR008920:IPR011711:IPR011991; KEGG: bbe:BBR47_15820 probable transcriptional regulator; PFAM: regulatory protein GntR HTH; fatty acid responsive transcription factor FadR domain protein; GntR domain protein; SMART: regulatory protein GntR HTH; SPTR: C0Z989 Probable transcriptional regulator; PFAM: FadR C-terminal domain; Bacterial regulatory proteins, gntR family; TIGRFAM: fatty acid metabolism transcriptional regulator FadR
YP_003807467.1	COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR006094:IPR004113:IPR016166:IPR016167:IPR 016164; KEGG: pfl:PFL_2767 alkyl-dihydroxyacetonephosphate synthase, PFAM: FAD linked oxidase domain protein; SPTR: Q4KD10 Alkyl-dihydroxyacetonephosphate synthase, PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain
YP_003807468.1	COGs: COG0578 glycerol-3-phosphate dehydrogenase; InterPro IPR006076:IPR000447; KEGG: dal:Dalk_3177 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: glycerol-3-phosphate dehydrogenase; SPTR: Q08UG6 glycerol-3-phosphate dehydrogenase 2; PFAM: FAD dependent oxidoreductase
YP_003807469.1	COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: hch:HCH_04623 sugar (pentulose and hexulose) kinase; PFAM: carbohydrate kinase, FGGY-like; SPTR: Q2SDF1 Sugar (Pentulose and hexulose) kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain
YP_003807470.1	InterPro IPR011990; KEGG: sfu:Sfum_2878 hypothetical protein; SPTR: A0LMA3 Putative uncharacterized protein
YP_003807471.1	COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR001667:IPR003156:IPR004610; KEGG: ade:Adeh_2536 single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Q2IKX4 Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ
YP_003807472.1	KEGG: afw:Anae109_3917 hypothetical protein; SPTR: A7HHA0 hypothetical protein
YP_003807473.1	COGs: COG1832 CoA-binding protein; InterPro IPR003781:IPR016040; KEGG: tmz:Tmz1t_3640 CoA-binding domain protein; PFAM: CoA-binding domain protein; SPTR: C4KBQ8 CoA-binding domain protein
YP_003807474.1	KEGG: sen:SACE_2473 integral membrane protein; SPTR: A4FCJ5 Integral membrane protein
YP_003807475.1	KEGG: Os06g0321700; hypothetical protein; SPTR: Q5ZA87 Os06g0321700 protein
YP_003807476.1	COGs: COG1351 alternative thymidylate synthase; InterPro IPR003669; KEGG: drt:Dret_1744 thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX; SPTR: C8X3N1 Thymidylate synthase, flavin-dependent; TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: Thymidylate synthase complementing protein; TIGRFAM: thymidylate synthase, flavin-dependent
YP_003807477.1	KEGG: rfr:Rfer_2066 secretion protein HlyD; SPTR: Q21WR2 Secretion protein HlyD
YP_003807478.1	COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR015927:IPR019759:IPR011056:IPR006197; KEGG: tgr:Tgr7_3151 repressor LexA; PFAM: peptidase S24/S26A/S26B, conserved region; SPTR: B8GQJ6 Repressor lexA; PFAM: peptidase S24-like
YP_003807479.1	COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: dal:Dalk_3654 amidohydrolase 2; PFAM: amidohydrolase 2; SPTR: B8FGW2 Amidohydrolase 2; PFAM: Amidohydrolase
YP_003807480.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004010; KEGG: sat:SYN_00971 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache domain protein; SMART: chemotaxis sensory transducer; SPTR: Q2LSK6 methyl-accepting chemotaxis protein; PFAM: Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003807481.1	COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR012336:IPR011538:IPR019554:IPR019575:IPR 001450:IPR012335:IPR017896:IPR017900:IPR001949; KEGG: dat:HRM2_16600 NuoF; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: NADH dehydrogenase (quinone); SPTR: C0QAI3 NuoF; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; 4Fe-4S binding domain; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain
YP_003807482.1	InterPro IPR012336:IPR012335; KEGG: dat:HRM2_16520 NADP-reducing hydrogenase, subunit B; SPTR: C0QAH5 NADP-reducing hydrogenase, subunit B
YP_003807483.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594:IPR004358:IPR005467; KEGG: dat:HRM2_16530 sensory signal transduction histidine kinase (ATPase domain protein); PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: B0PGV2 Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003807484.1	COGs: COG1379 conserved hypothetical protein; InterPro IPR003141:IPR016195:IPR004013; KEGG: dth:DICTH_0765 PHP domain, PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: A1HP42 PHP C-terminal domain protein; PFAM: PHP domain
YP_003807485.1	COGs: COG4624 Iron only hydrogenase large subunit C-terminal domain; InterProIPR009016:IPR001450:IPR007202:IPR010766:IPR 017896:IPR017900; KEGG: dat:HRM2_16550 iron-sulfur binding hydrogenase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; DRTGG domain protein; SPTR: C0QAH8 Iron-sulfur binding hydrogenase; PFAM: Iron only hydrogenase large subunit, C-terminal domain; DRTGG domain; Putative Fe-S cluster; 4Fe-4S binding domain
YP_003807486.1	COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); InterPro IPR003594; KEGG: dth:DICTH_0761 anti-sigma regulatory factor; PFAM: ATP-binding region ATPase domain protein; SPTR: C1TN97 Anti-sigma regulatory factor (Ser/Thr protein kinase); PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003807487.1	KEGG: tai:Taci_0690 hypothetical protein; SPTR: D1B9H3 Putative uncharacterized protein; manually curated; PFAM: DRTGG domain
YP_003807488.1	COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR012336:IPR002023:IPR012335; KEGG: dat:HRM2_16590 NuoE; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: C0QAI2 NuoE; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit
YP_003807489.1	COGs: COG0368 Cobalamin-5-phosphate synthase; InterPro IPR003805; KEGG: dau:Daud_1313 cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; SPTR: B1I4H1 Cobalamin 5'-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase
YP_003807490.1	COGs: COG2038 NaMN:DMB phosphoribosyltransferase; InterPro IPR017846:IPR003200; KEGG: glo:Glov_3082 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PRIAM: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; SPTR: B3E975 Nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
YP_003807491.1	COGs: COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; InterPro IPR003203; KEGG: bmr:BMI_I1321 adenosylcobinamide kinase; PFAM: cobalbumin biosynthesis protein; PRIAM: Adenosylcobinamide-phosphate guanylyltransferase; SPTR: A9DBW3 Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase
YP_003807492.1	KEGG: sfu:Sfum_1763 hypothetical protein; SPTR: A0LJ48 Putative uncharacterized protein
YP_003807493.1	InterPro IPR001173; KEGG: chl:Chy400_1885 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C1ZM99 Predicted glycosyltransferase; PFAM: glycosyl transferase family 2
YP_003807494.1	COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: gur:Gura_3701 peptidase U62, modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: A5G7T6 peptidase U62, modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase
YP_003807495.1	InterPro IPR001763; KEGG: dma:DMR_29550 rhodanese-like domain protein; SMART: rhodanese domain protein; SPTR: C4XHS2 rhodanese-like domain protein; PFAM: rhodanese-like domain
YP_003807496.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR016038; KEGG: tac:Ta0351 acetyl-CoA acetyltransferase; SPTR: Q9HL79 Sterol carrier protein x/sterol carrier protein 2 related protein
YP_003807497.1	COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: tvo:TVN1259 nucleic-acid-binding protein; PFAM: protein of unknown function DUF35; SPTR: Q978Y2 Putative uncharacterized protein TVG1322512
YP_003807498.1	COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR016166:IPR016164:IPR006094:IPR004113:IPR 016167:IPR016168:IPR000542; KEGG: dat:HRM2_18570 GlcD2; PFAM: FAD linked oxidase domain protein; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: C0QBU7 GlcD2; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD
YP_003807499.1	COGs: COG0247 Fe-S oxidoreductase; InterProIPR009051:IPR004017:IPR012285:IPR017896:IPR 017900; KEGG: gem:GM21_0576 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: C6DZR8 Putative uncharacterized protein; PFAM: Cysteine-rich domain
YP_003807500.1	InterPro IPR020365; KEGG: dma:DMR_37280  zinc resistance-associated protein precursor; SPTR: C4XM91 Putative zinc resistance-associated protein
YP_003807501.1	COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR003661:IPR003594:IPR009082:IPR004358:IPR 005467; KEGG: dba:Dbac_1016 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C4T0M4 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003807502.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR011006:IPR009057:IPR 002078:IPR002197:IPR020441; KEGG: dol:Dole_2807 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: A8ZXY3 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003807503.1	COGs: COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; InterPro IPR006315:IPR005546; KEGG: dol:Dole_2458 outer membrane autotransporter; PFAM: Autotransporter beta- domain protein; SPTR: Q0YV05 Outer membrane autotransporter barrel; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain
YP_003807504.1	COGs: COG0448 ADP-glucose pyrophosphorylase; InterPro IPR011004:IPR005835:IPR005836; KEGG: sfu:Sfum_3485 nucleotidyl transferase; PFAM: Nucleotidyl transferase; SPTR: A0LP04 Nucleotidyl transferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate adenylyltransferase
YP_003807505.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dac:Daci_3112 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A9BU35 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003807506.1	COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: ppd:Ppro_1246 ABC-type Co2+ transport system periplasmic component-like protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: C8NCY5 Putative uncharacterized protein; PFAM: Nickel uptake substrate-specific transmembrane region
YP_003807507.1	KEGG: dvl:Dvul_2037 hypothetical protein; SPTR: Q72DI1 Putative uncharacterized protein
YP_003807508.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: dol:Dole_1102 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: A8ZX53 Putative uncharacterized protein; PFAM: Domain of unknown function DUF20
YP_003807509.1	COGs: COG0388 amidohydrolase; InterPro IPR003010:IPR001110; KEGG: ade:Adeh_3575 nitrilase/cyanide hydratase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Q2IFI3 Nitrilase/cyanide hydratase; PFAM: carbon-nitrogen hydrolase
YP_003807510.1	InterPro IPR003018; KEGG: dol:Dole_1615 response regulator receiver protein; PFAM: GAF domain protein; SPTR: A9A019 Response regulator receiver protein; PFAM: Protein of unknown function, DUF484
YP_003807511.1	COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR011146:IPR001310:IPR011151; KEGG: ctt:CtCNB1_3676 histidine triad (HIT) protein; PFAM: histidine triad (HIT) protein; SPTR: D0J4Y9 Histidine triad (HIT) protein; PFAM: HIT domain
YP_003807512.1	COGs: COG3264 Small-conductance mechanosensitive channel; InterProIPR000595:IPR018490:IPR011066:IPR010920:IPR 006685:IPR014710; KEGG: mxa:MXAN_2799 mechanosensitive ion channel/cyclic nucleotide-binding domain-containing protein; PFAM: MscS Mechanosensitive ion channel; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: B5II47 Mechanosensitive ion channel/cyclic nucleotide-binding domain protein; PFAM: Mechanosensitive ion channel; Cyclic nucleotide-binding domain
YP_003807513.1	COGs: COG1272 membrane protein hemolysin III homolog; InterPro IPR005744:IPR004254; KEGG: dat:HRM2_17730 channel protein (hemolysin III family protein); PFAM: Hly-III family protein; SPTR: C1SGF8 Channel protein, hemolysin III family; TIGRFAM: channel protein, hemolysin III family; PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family
YP_003807514.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764; KEGG: dsy:DSY4721 hypothetical protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: Q24N82 Putative uncharacterized protein; PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003807515.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR011006:IPR009057:IPR 002078:IPR002197; KEGG: dba:Dbac_0335 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: C7LVC0 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003807516.1	COGs: COG5002 Signal transduction histidine kinase; InterProIPR000014:IPR003660:IPR003661:IPR003594:IPR 009082:IPR013656:IPR004358:IPR005467; KEGG: dba:Dbac_0336 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: C7LVC1 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003807517.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR011006:IPR013105:IPR011990:IPR 019734:IPR013026; KEGG: nth:Nther_0252 response regulator receiver protein; PFAM: response regulator receiver; hypothetical protein; SMART: response regulator receiver; SPTR: B2A4S9 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003807518.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR016040:IPR003148:IPR006036; KEGG: kol:Kole_0373 TrkA-N domain protein; PFAM: TrkA-N domain protein; SPTR: B4WH72 TrkA-N domain superfamily; PFAM: TrkA-N domain
YP_003807519.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR016040:IPR003148:IPR006037:IPR006036; KEGG: nth:Nther_0254 TrkA-N domain protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: B4WH73 TrkA-N domain family; PFAM: TrkA-N domain; TrkA-C domain
YP_003807520.1	COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: kol:Kole_0375 cation transporter; PFAM: cation transporter; SPTR: B4WH74 Cation transport protein; PFAM: Cation transport protein
YP_003807521.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155; KEGG: dal:Dalk_4240 hypothetical protein; SPTR: B8FM84 Putative uncharacterized protein
YP_003807522.1	COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: dal:Dalk_4239 protein of unknown function DUF35; PFAM: protein of unknown function DUF35; SPTR: B8FM83 Putative uncharacterized protein; PFAM: rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain
YP_003807523.1	COGs: COG1671 conserved hypothetical protein; InterPro IPR003791; KEGG: azo:azo2224 YaiI/YqxD family protein; PFAM: protein of unknown function DUF188; SPTR: Q2BPA3 Putative uncharacterized protein; PFAM: Uncharacterized BCR, YaiI/YqxD family COG1671
YP_003807524.1	COGs: COG0578 glycerol-3-phosphate dehydrogenase; InterPro IPR006076:IPR000447; KEGG: amr:AM1_2702 glycerol-3-phosphate dehydrogenase domain-containing protein; PFAM: FAD dependent oxidoreductase; SPTR: A0YYL2 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase
YP_003807525.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR004812:IPR016196:IPR011701; KEGG: mac:MA1858 membrane transport protein; PFAM: major facilitator superfamily MFS_1; SPTR: Q8TPP8 Membrane transport protein; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily
YP_003807526.1	KEGG: bte:BTH_I3269 phage-related secreted protein; SPTR: C9LRF1 Putative MoaD
YP_003807527.1	KEGG: hypothetical protein; SPTR: A8TMU2 Sensor protein
YP_003807528.1	KEGG: rpb:RPB_3423 hypothetical protein; SPTR: C4GKM1 Putative uncharacterized protein
YP_003807529.1	KEGG: ecw:EcE24377A_C0002 TraT complement resistance protein; SPTR: A7ZGS1 TraT complement resistance protein
YP_003807531.1	COGs: COG3926 Putative secretion activating protein; InterPro IPR008565:IPR018537; KEGG: pde:Pden_4087 hypothetical protein; PFAM: peptidoglycan binding domain; protein of unknown function DUF847; SPTR: A1B9F9 Putative uncharacterized protein; PFAM: Predicted peptidoglycan domain; Predicted lysozyme (DUF847)
YP_003807532.1	KEGG: dde:Dde_3394 hypothetical protein; SPTR: Q30VV8 Putative uncharacterized protein
YP_003807533.1	KEGG: mca:MCA2902 hypothetical protein; SPTR: Q603A5 Putative uncharacterized protein
YP_003807534.1	InterPro IPR018087; KEGG: mca:MCA2904 hypothetical protein; SPTR: Q603A3 Putative uncharacterized protein
YP_003807535.1	KEGG: mca:MCA2905 prophage MuMc02 tail fiber domain-containing protein; SPTR: Q603A2 Prophage MuMc02, tail fiber domain protein; PFAM: Phage tail protein (Tail_P2_I)
YP_003807536.1	COGs: COG3948 Phage-related baseplate assembly protein; InterPro IPR006949:IPR014507; KEGG: drm:Dred_1220 baseplate J family protein; PFAM: Baseplate J family protein; SPTR: B6WRR4 Putative uncharacterized protein; PFAM: Baseplate J-like protein
YP_003807537.1	InterPro IPR007048; KEGG: drm:Dred_1219 gpW/GP25 family protein; PFAM: GPW/gp25 family protein; SPTR: C2BG15 GPW/gp25 family protein; PFAM: Gene 25-like lysozyme
YP_003807538.1	KEGG: cvi:CV_0414 hypothetical protein; SPTR: Q7P101 Putative uncharacterized protein; PFAM: Phage P2 GpU
YP_003807539.1	COGs: COG4540 Phage P2 baseplate assembly protein gpV; InterPro IPR013046:IPR006531; KEGG: drm:Dred_1217 phage baseplate assembly protein V; PFAM: baseplate assembly protein V; SPTR: B6WRR1 Putative uncharacterized protein; TIGRFAM: phage baseplate assembly protein V; PFAM: Phage-related baseplate assembly protein; TIGRFAM: phage baseplate assembly protein V
YP_003807540.1	COGs: COG3500 Phage protein D; InterPro IPR010277; KEGG: drm:Dred_1216 phage late control D family protein; PFAM: late control D family protein; SPTR: B6WRQ9 Putative uncharacterized protein; PFAM: Phage late control gene D protein (GPD)
YP_003807541.1	KEGG: bcj:BCAS0511  phage tail protein gpX; SPTR: B4ENQ7 Putative phage tail protein gpX; PFAM: Phage Tail Protein X
YP_003807542.1	COGs: COG5283 Phage-related tail protein; InterPro IPR010090; KEGG: rce:RC1_1127 phage tail tape measure protein, TP901 family, core region; PFAM: tail tape measure protein TP901 core region; SPTR: C6NTT0 Phage tail length tape-measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: Phage-related minor tail protein; TIGRFAM: phage tail tape measure protein, TP901 family, core region
YP_003807544.1	KEGG: drm:Dred_1214 hypothetical protein; SPTR: C3WMU0 Predicted protein
YP_003807545.1	COGs: COG3498 Phage tail tube protein FII; InterPro IPR006498; KEGG: spe:Spro_4913 major tail tube protein; PFAM: major tail tube protein; SPTR: A8GLL5 Major tail tube protein; PFAM: Phage tail tube protein FII; TIGRFAM: phage contractile tail tube protein, P2 family
YP_003807546.1	COGs: COG3497 Phage tail sheath protein FI; KEGG: drm:Dred_1212 hypothetical protein; SPTR: A4J3U3 Putative uncharacterized protein; PFAM: Phage tail sheath protein
YP_003807547.1	KEGG: hypothetical protein; SPTR: B9Q803 Putative uncharacterized protein
YP_003807548.1	KEGG: rfr:Rfer_2949 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; SPTR: Q21U93 Imidazole glycerol phosphate synthase subunit hisH
YP_003807549.1	COGs: COG5005 Mu-like prophage protein gpG; InterPro IPR006522; KEGG: dvu:DVU1114 virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; SPTR: Q72D17 Virion morphogenesis protein; TIGRFAM: phage virion morphogenesis protein; PFAM: Phage virion morphogenesis family; TIGRFAM: phage virion morphogenesis ( tail completion) protein
YP_003807550.1	COGs: COG4387 Mu-like prophage protein gp36; InterPro IPR009752; KEGG: sfu:Sfum_1884 hypothetical protein; PFAM: protein of unknown function DUF1320; SPTR: A0LJG7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1320)
YP_003807551.1	KEGG: dde:Dde_3377 hypothetical protein; SPTR: Q30VX5 Putative uncharacterized protein; PFAM: Phage major capsid protein E
YP_003807552.1	KEGG: dde:Dde_3376 hypothetical protein; SPTR: Q30VX6 Putative uncharacterized protein
YP_003807553.1	KEGG: dde:Dde_3375 hypothetical protein; SPTR: Q30VX7 Putative uncharacterized protein
YP_003807554.1	KEGG: dde:Dde_3369 hypothetical protein; SPTR: Q30VY3 Putative uncharacterized protein
YP_003807555.1	KEGG: dde:Dde_3370 hypothetical protein; SPTR: Q30VY2 Putative uncharacterized protein
YP_003807556.1	KEGG: dde:Dde_3371 hypothetical protein; SPTR: Q30VY1 Putative uncharacterized protein; PFAM: Transposase
YP_003807557.1	COGs: COG4373 Mu-like prophage FluMu protein gp28; InterPro IPR004921; KEGG: dra:DR_A0094 hypothetical protein; PFAM: protein of unknown function DUF264; SPTR: Q9RZ60 Putative uncharacterized protein; PFAM: Terminase-like family
YP_003807558.1	COGs: COG4383 Mu-like prophage protein gp29; InterPro IPR009279; KEGG: dde:Dde_3373 hypothetical protein; PFAM: protein of unknown function DUF935; SPTR: Q30VX9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF935)
YP_003807559.1	COGs: COG2369 conserved hypothetical protein homolog of phage Mu protein gp30; InterPro IPR006528; KEGG: dde:Dde_3374 phage  head morphogenesis protein, SPP1 gp7; PFAM:  head morphogenesis protein SPP1 gp7; SPTR: Q30VX8 Phage  head morphogenesis protein, SPP1 gp7; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: Phage Mu protein F like protein; TIGRFAM: phage  head morphogenesis protein, SPP1 gp7 family
YP_003807560.1	InterPro IPR006935:IPR018187; KEGG: dau:Daud_0199 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; SPTR: B1I0R5 Type III restriction enzyme, res subunit; manually curated; PFAM: Type III restriction enzyme, res subunit
YP_003807561.1	COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002941:IPR002295:IPR002052:IPR005829; KEGG: sfu:Sfum_2856 DNA methylase N-4/N-6 domain-containing protein; PFAM: DNA methylase N-4/N-6 domain protein; SPTR: A0LM81 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase
YP_003807562.1	InterPro IPR009057; KEGG: rce:RC1_1105 hypothetical protein; SPTR: C4WG48 Putative uncharacterized protein
YP_003807563.1	KEGG: dde:Dde_3359 hypothetical protein; SPTR: Q30VZ3 Putative uncharacterized protein
YP_003807564.1	KEGG: dde:Dde_3358 hypothetical protein; SPTR: Q30VZ4 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1018)
YP_003807565.1	KEGG: hypothetical protein; SPTR: A9V0X5 Predicted protein
YP_003807566.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119:IPR010992; KEGG: saf:SULAZ_0074 DNA-binding protein HU 1 (DNA-binding protein II) (HB); PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: C1DXF9 DNA-binding protein HU 1 (DNA-binding protein II) (HB); PFAM: Bacterial DNA-binding protein
YP_003807567.1	KEGG: dvu:DVU1136 host-nuclease inhibitor protein Gam, SPTR: Q72CZ5 Host-nuclease inhibitor protein Gam, PFAM: Bacteriophage Mu Gam like protein
YP_003807568.1	KEGG: gur:Gura_1571 multi-sensor signal transduction histidine kinase
YP_003807569.1	KEGG: dma:DMR_14510 hypothetical protein; SPTR: C4XNG7 Putative uncharacterized protein
YP_003807570.1	COGs: COG2842 Uncharacterized ATPase  transposase; KEGG: dvu:DVU1139 bacteriophage DNA transposition B protein, SPTR: Q72CZ2 Bacteriophage DNA transposition B protein
YP_003807571.1	InterProIPR012337:IPR009061:IPR009057:IPR001584:IPR 012287; KEGG: dvu:DVU1140 bacteriophage transposase A protein, PFAM: integrase catalytic region; SPTR: Q72CZ1 Bacteriophage transposase A protein, PFAM: Mu transposase, C-terminal; Mu DNA binding, I gamma subdomain; integrase core domain
YP_003807572.1	KEGG: dvm:DvMF_0711 hypothetical protein; SPTR: B8DK72 Putative uncharacterized protein
YP_003807573.1	InterProIPR001387:IPR015927:IPR010982:IPR019759:IPR 011056; KEGG: csa:Csal_1365  phage repressor; PFAM: helix-turn-helix domain protein; peptidase S24/S26A/S26B, conserved region; SMART: helix-turn-helix domain protein; SPTR: Q1QXT8 Putative phage repressor; PFAM: Helix-turn-helix; peptidase S24-like
YP_003807574.1	COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterProIPR000014:IPR001932:IPR013656:IPR010822:IPR 000700; KEGG: gme:Gmet_2818  PAS/PAC sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; PAS domain containing protein; SPTR: C8QVW1 Putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation protein E (SpoIIE); PAS fold; TIGRFAM: PAS domain S-box
YP_003807575.1	KEGG: dal:Dalk_3299 hypothetical protein; SPTR: B8FJ61 Putative uncharacterized protein
YP_003807576.1	KEGG: dal:Dalk_2678 hypothetical protein; SPTR: B8FIX9 Putative uncharacterized protein
YP_003807577.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439:IPR017871; KEGG: sfu:Sfum_3314 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A0LNI5 ABC transporter related; PFAM: ABC transporter
YP_003807578.1	COGs: COG1972 Nucleoside permease; InterPro IPR002668:IPR011642:IPR011657; KEGG: dat:HRM2_11540 NupC; PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein; SPTR: C0QLW0 NupC; PFAM: Na+ dependent nucleoside transporter C-terminus; Na+ dependent nucleoside transporter N-terminus; Nucleoside recognition; TIGRFAM: nucleoside transporter
YP_003807579.1	COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: dal:Dalk_4149 protein of unknown function DUF342; PFAM: protein of unknown function DUF342; SPTR: B8FMW3 Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function (DUF342)
YP_003807580.1	KEGG: sus:Acid_4073 alpha-2-macroglobulin domain-containing protein; SPTR: Q01Z77 Alpha-2-macroglobulin domain protein
YP_003807581.1	COGs: COG1291 flagellar motor component; InterPro IPR002898:IPR000540; KEGG: dvl:Dvul_2319 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q72ED8 Chemotaxis protein PomA; PFAM: MotA/TolQ/ExbB proton channel family
YP_003807582.1	COGs: COG1360 flagellar motor protein; InterPro IPR006665; KEGG: dsa:Desal_3399 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: C6BSJ2 OmpA/MotB domain protein; PFAM: OmpA family
YP_003807583.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089:IPR004090; KEGG: dat:HRM2_09140 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Q1K450 methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; Protein of unknown function (DUF3365); methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003807584.1	COGs: COG0430 RNA 3'-terminal phosphate cyclase; InterPro IPR013792:IPR000228:IPR013796; KEGG: pcl:Pcal_2009 RNA 3'-terminal-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-terminal phosphate cyclase insert region; PRIAM: RNA-3'-phosphate cyclase; SPTR: A3MXQ7 Probable RNA 3'-terminal phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase (RTC), insert domain; RNA 3'-terminal phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase
YP_003807585.1	COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR004576:IPR014001:IPR001650:IPR003711:IPR 011545:IPR005118:IPR014021; KEGG: gsu:GSU0017 transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: Q74H75 Transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd)
YP_003807586.1	InterPro IPR005834; KEGG: ppr:PBPRA2135 hypothetical protein; PFAM: haloacid dehalogenase; SPTR: A6FCM0 Putative uncharacterized protein; PFAM: haloacid dehalogenase-like hydrolase
YP_003807587.1	COGs: COG1749 flagellar hook protein FlgE; InterProIPR020013:IPR001444:IPR011491:IPR010930:IPR 019776; KEGG: pau:PA14_50450 flagellar hook protein FlgE; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein; SPTR: Q02IP7 flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins
YP_003807588.1	COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR015391:IPR000297; KEGG: pca:Pcar_0090 parvulin-like peptidyl-prolyl isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; SPTR: Q3A8D9 Parvulin-like peptidyl-prolyl isomerase; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain
YP_003807589.1	InterPro IPR015391:IPR000297; KEGG: sat:SYN_02487 peptidyl-prolyl cis-trans isomerase; PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: Q2LRQ8 peptidyl-prolyl cis-trans isomerase; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain
YP_003807590.1	COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873:IPR020845; KEGG: dol:Dole_3006 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A8ZZ36 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003807591.1	COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cycothcome C subunit; InterPro IPR005126:IPR011031; KEGG: dal:Dalk_2564 NapC/NirT cycothcome C domain protein; PFAM: NapC/NirT cycothcome C domain protein; SPTR: B8FFJ7 NapC/NirT cycothcome C domain protein; PFAM: NapC/NirT cycothcome C family, N-terminal region
YP_003807592.1	InterPro IPR011031; KEGG: dal:Dalk_2563 hypothetical protein; SPTR: B8FFJ6 Putative uncharacterized protein
YP_003807593.1	KEGG: dal:Dalk_2368 hypothetical protein; SPTR: B8FAX5 Putative uncharacterized protein
YP_003807594.1	KEGG: sat:SYN_00675  cytoplasmic protein; SPTR: Q2LV52 Hypothetical cytosolic protein; PFAM: DsrE/DsrF-like family
YP_003807595.1	COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: dal:Dalk_3455 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: B8FLJ7 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase
YP_003807596.1	COGs: COG0426 flavoprotein; InterPro IPR008254; KEGG: dol:Dole_2648 flavodoxin/nitric oxide synthase; SPTR: A8ZX72 Flavodoxin/nitric oxide synthase; PFAM: Flavodoxin
YP_003807597.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dat:HRM2_47540 outer membrane receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C0QHE4 Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain
YP_003807598.1	COGs: COG2875 precorrin-4 methylase; InterPro IPR000878:IPR014777:IPR014776; KEGG: ppd:Ppro_1250 uroporphyrin-III C/tetrapyrrole methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: A1ANF1 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases
YP_003807599.1	COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: ppd:Ppro_1251 ABC-type Co2+ transport system periplasmic component-like protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: Q1NY28 ABC-type Co2+ transport system periplasmic component-like; PFAM: Nickel uptake substrate-specific transmembrane region
YP_003807600.1	COGs: COG0531 Amino acid transporter; InterPro IPR004841:IPR002293; KEGG: ote:Oter_3914 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: B1ZZB6 Amino acid permease-associated region; PFAM: Amino acid permease
YP_003807601.1	KEGG: rrs:RoseRS_3904 hypothetical protein; SPTR: A8UTG9 Putative uncharacterized protein
YP_003807602.1	KEGG: saf:SULAZ_1081 hypothetical protein; SPTR: A8UTG9 Putative uncharacterized protein
YP_003807603.1	COGs: COG0310 ABC-type Co2+ transport system permease component; InterPro IPR002751; KEGG: dvl:Dvul_1936 cobalt transport protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; SPTR: A1VET6 Cobalamin (Vitamin B12) biosynthesis CbiM protein; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM
YP_003807604.1	COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423:IPR020003; KEGG: sfu:Sfum_2809 RND efflux system outer membrane lipoprotein; PFAM: outer membrane efflux protein; SPTR: A0LM35 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_003807605.1	COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sfu:Sfum_2810 ABC transporter related; PFAM: protein of unknown function DUF214; SPTR: A0LM36 Macrolide export ATP-binding/permease protein macB; PFAM: Predicted permease
YP_003807606.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439:IPR017911:IPR017871; KEGG: sfu:Sfum_2810 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B9XKQ8 ABC transporter related-protein; PFAM: ABC transporter
YP_003807607.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: sfu:Sfum_2811 RND family efflux transporter MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: A0LM37 Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003807608.1	COGs: COG5012 cobalamin binding protein; InterPro IPR006158:IPR003759; KEGG: dal:Dalk_4912 cobalamin B12-binding domain protein; PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; SPTR: B8FDF7 Cobalamin B12-binding domain protein; PFAM: B12 binding domain
YP_003807609.1	COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: dal:Dalk_4913 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH; SPTR: B8FDF8 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_003807610.1	InterPro IPR012437; KEGG: dal:Dalk_4914 protein of unknown function DUF1638; PFAM: Protein of unknown function DUF1638; SPTR: B8FDF9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1638)
YP_003807611.1	COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR011005:IPR000489; KEGG: dal:Dalk_4910 methionine synthase; PFAM: dihydropteroate synthase DHPS; SPTR: B8FDF5 Methionine synthase; PFAM: Pterin binding enzyme
YP_003807612.1	COGs: COG5012 cobalamin binding protein; InterPro IPR006158:IPR003759; KEGG: dal:Dalk_4909 methionine synthase; PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; SPTR: B8FDF4 Methionine synthase; PFAM: B12 binding domain
YP_003807613.1	COGs: COG0407 uroporphyrinogen-III decarboxylase; KEGG: dal:Dalk_4908 hypothetical protein; SPTR: B8FDF3 Putative uncharacterized protein; PFAM: uroporphyrinogen decarboxylase (URO-D)
YP_003807614.1	COGs: COG4313 Protein involved in meta-pathway of phenol degradation; KEGG: sse:Ssed_1728 hypothetical protein; SPTR: A8FU16 Putative uncharacterized protein
YP_003807615.1	COGs: COG3894 Uncharacterized metal-binding protein; InterPro IPR001041:IPR012675; KEGG: mta:Moth_2112 ferredoxin; PFAM: ferredoxin; SPTR: Q2RGN5 Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain
YP_003807616.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR003593:IPR011006:IPR009057:IPR 002078:IPR002197:IPR020441; KEGG: dba:Dbac_0628 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: C7LX78 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003807617.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR009082:IPR004358:IPR 005467:IPR000629; KEGG: dba:Dbac_0629 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C7LX79 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003807618.1	KEGG: dma:DMR_02010 hypothetical protein; SPTR: C4XGB2 Putative uncharacterized protein
YP_003807619.1	COGs: COG1203 helicase; InterProIPR006675:IPR006474:IPR014001:IPR006674:IPR 014021; KEGG: dvm:DvMF_1971 CRISPR-associated helicase Cas3; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: DEAD-like helicase; SPTR: B8DQ50 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; metal dependent phophohydrolase; PFAM: HD domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; uncharacterized domain HDIG
YP_003807620.1	InterPro IPR013422:IPR010155; KEGG: mfa:Mfla_0602 CRISPR-associated Cas5d family protein; PFAM: CRISPR-associated protein CT1134; SPTR: C0GMN3 CRISPR-associated protein Cas5 family; TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, Dvulg subtype; CRISPR-associated protein Cas5, N-terminal domain
YP_003807621.1	InterPro IPR010144; KEGG: dma:DMR_14370 hypothetical protein; PFAM: CRISPR-associated protein CT1133; SPTR: C4XNF3 Putative uncharacterized protein; TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein (Cas_Csd1); TIGRFAM: CRISPR-associated protein, Csd1 family
YP_003807622.1	COGs: COG3649 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR006482:IPR013418; KEGG: cvi:CV_1227 hypothetical protein; PFAM: CRISPR-associated protein TM1801; SPTR: C0GMN1 CRISPR-associated protein, Csd2 family; TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family
YP_003807623.1	COGs: COG1468 RecB family exonuclease; InterPro IPR013343; KEGG: sat:SYN_02474 exonuclease N; PFAM: CRISPR-associated protein Cas4; SPTR: Q2LX05 RecB family exonuclease N; TIGRFAM: CRISPR-associated protein Cas4; PFAM: Domain of unknown function DUF83; TIGRFAM: CRISPR-associated protein Cas4
YP_003807624.1	COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR019856:IPR002729; KEGG: sat:SYN_02473  cytoplasmic protein; PFAM: protein of unknown function DUF48; SPTR: Q2LX06 Hypothetical cytosolic protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; CRISPR-associated protein Cas1, DVULG subtype
YP_003807625.1	COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR003799; KEGG: dvu:DVUA0135 CRISPR-associated Cas2 family protein; PFAM: protein of unknown function DUF196; SPTR: Q72WF4 CRISPR-associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2
YP_003807626.1	COGs: COG3240 phospholipase/lecithinase/hemolysin; InterPro IPR006315:IPR005546:IPR017186; KEGG: dps:DP2994 lipase 1; PFAM: Autotransporter beta- domain protein; SPTR: Q6AIV7 Related to lipase 1; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain
YP_003807627.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003593:IPR003439:IPR017871; KEGG: dma:DMR_44920  ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C4XRR7 Putative ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_003807628.1	COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: gem:GM21_1778 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C6E6J1 Oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter
YP_003807629.1	COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dau:Daud_0387 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B1I1X8 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003807630.1	COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: dau:Daud_0386 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B1I1X7 Binding-protein-dependent transport systems inner membrane component; manually curated; PFAM: Binding-protein-dependent transport system inner membrane component
YP_003807631.1	InterPro IPR013216; KEGG: rci:RCIX1631 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Q0W426 Putative uncharacterized protein; PFAM: methyltransferase domain
YP_003807632.1	COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR006311:IPR000914; KEGG: dae:Dtox_0360 extracellular solute-binding protein family 5; PFAM: extracellular solute-binding protein family 5; SPTR: C8W4W0 extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_003807633.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_0867 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: B8FI05 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
YP_003807634.1	KEGG: tye:THEYE_A1933 lipoprotein, SPTR: B5YI92 Lipoprotein
YP_003807635.1	KEGG: sfu:Sfum_3879 hypothetical protein; SPTR: A0LQ46 Putative uncharacterized protein
YP_003807636.1	COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR016102:IPR016040:IPR003781; KEGG: dal:Dalk_3032 CoA-binding domain protein; PFAM: CoA-binding domain protein; SPTR: B8FL87 CoA-binding domain protein; PFAM: CoA binding domain
YP_003807637.1	COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR013650:IPR011761; KEGG: dol:Dole_0137 ATP-grasp domain-containing protein; PFAM: ATP-grasp domain protein; SPTR: A8ZSN4 ATP-grasp domain protein; PFAM: ATP-grasp domain
YP_003807638.1	COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: drt:Dret_0131 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C8WZF8 Transcriptional regulator, MarR family; PFAM: MarR family
YP_003807639.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR000595:IPR001808:IPR018490:IPR014710:IPR 011991:IPR012318; KEGG: dal:Dalk_0952 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: B8FI88 Transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_003807640.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797:IPR002229; KEGG: gbm:Gbem_1791 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: B5EAA1 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein
YP_003807641.1	KEGG: nha:Nham_3101 GTP-dependent nucleic acid-binding protein EngD; SPTR: B5JD81 Inner membrane protein CreD
YP_003807642.1	KEGG: hypothetical protein; SPTR: A4QRJ0 Putative uncharacterized protein
YP_003807643.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR018060:IPR009057:IPR000005:IPR020449:IPR 018062; KEGG: dsa:Desal_1879 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C6BUD1 Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_003807644.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR010917; KEGG: dds:Ddes_0429 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8J3V6 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003807645.1	InterPro IPR013217; KEGG: dsa:Desal_1877 methyltransferase type 12; PFAM: methyltransferase type 12; SPTR: C6BUC9 methyltransferase type 12; PFAM: methyltransferase domain
YP_003807646.1	COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; KEGG: dds:Ddes_0427 hypothetical protein; SPTR: B8J3V4 Putative uncharacterized protein
YP_003807647.1	COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003593:IPR000515:IPR003439:IPR017871; KEGG: dsa:Desal_1875 binding-protein-dependent transport systems inner membrane component; PFAM: ABC transporter related; binding-protein-dependent transport systems inner membrane component; SMART: ATPase AAA; SPTR: C6BUC7 Binding-protein-dependent transport systems inner membrane component; PFAM: ABC transporter; Binding-protein-dependent transport system inner membrane component
YP_003807648.1	InterPro IPR018524; KEGG: mvn:Mevan_0111 hypothetical protein; SPTR: A7BPX5 Membrane protein
YP_003807649.1	KEGG: rru:Rru_A1148 hypothetical protein; SPTR: Q2RV96 Putative uncharacterized protein; PFAM: RAMP superfamily
YP_003807650.1	InterPro IPR005537; KEGG: rru:Rru_A1149 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: Q2RV95 Putative uncharacterized protein; PFAM: RAMP superfamily
YP_003807651.1	KEGG: rru:Rru_A1150 hypothetical protein; SPTR: Q2RV94 Putative uncharacterized protein; PFAM: RAMP superfamily
YP_003807652.1	KEGG: rru:Rru_A1151 hypothetical protein; SPTR: Q2RV93 Putative uncharacterized protein
YP_003807653.1	COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729:IPR000477:IPR000123; KEGG: pph:Ppha_2459 CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; RNA-directed DNA polymerase (Reverse transcriptase); SPTR: B4SEW7 CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); CRISPR associated protein Cas1; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; CRISPR-associated protein Cas1
YP_003807654.1	InterPro IPR003799; KEGG: chl:Chy400_3649 CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; SPTR: B9LDQ2 CRISPR-associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2
YP_003807655.1	KEGG: dau:Daud_1295 hypothetical protein; SPTR: A4BL60 Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2276)
YP_003807656.1	InterPro IPR000157; KEGG: mag:amb3409 hypothetical protein; SPTR: Q2W1R2 FOG: TPR repeat
YP_003807657.1	KEGG: ana:alr0841 hypothetical protein; SPTR: B4W3A2 Putative uncharacterized protein
YP_003807658.1	InterPro IPR009057:IPR001647:IPR012287; KEGG: sus:Acid_2363 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Q025G7 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003807659.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: afw:Anae109_4101 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: A7HHT3 methyltransferase type 11; PFAM: methyltransferase domain
YP_003807660.1	KEGG: hoh:Hoch_4580 phosphate ABC transporter, inner membrane subunit PstA; SPTR: C1DMD3 D-galactonate transporter
YP_003807661.1	KEGG: sfu:Sfum_4024 hypothetical protein; SPTR: A0LQI8 Putative uncharacterized protein
YP_003807662.1	COGs: COG2025 electron transfer flavoprotein subunit alpha; InterPro IPR014730:IPR014731:IPR001308:IPR014729; KEGG: dal:Dalk_4506 electron transfer flavoprotein subunit alpha; PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit; SPTR: B8FCM2 electron transfer flavoprotein subunit alpha; PFAM: electron transfer flavoprotein domain; electron transfer flavoprotein FAD-binding domain
YP_003807663.1	COGs: COG2086 electron transfer flavoprotein subunit beta; InterPro IPR014730:IPR012255:IPR014729; KEGG: dal:Dalk_4507 electron transfer flavoprotein alpha/beta-subunit; PFAM: electron transfer flavoprotein alpha/beta-subunit; SPTR: B8FCM3 electron transfer flavoprotein alpha/beta-subunit; PFAM: electron transfer flavoprotein domain
YP_003807664.1	COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: dal:Dalk_0100 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SPTR: B8FKJ5 phosphoglycerate mutase; PFAM: phosphoglycerate mutase family
YP_003807665.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764; KEGG: dal:Dalk_2466 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FF99 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003807666.1	InterPro IPR009057:IPR011075:IPR001647:IPR012287; KEGG: dal:Dalk_2467 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FFA0 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003807667.1	COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR011009:IPR002575:IPR008271; KEGG: dol:Dole_1459 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: A8ZZB0 Aminoglycoside phosphotransferase; PFAM: phosphotransferase enzyme family
YP_003807668.1	COGs: COG2006 conserved hypothetical protein; InterPro IPR007160; KEGG: dol:Dole_0364 hypothetical protein; PFAM: protein of unknown function DUF362; SPTR: A8ZT10 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF362)
YP_003807669.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR016040:IPR008927:IPR006176:IPR006108:IPR 013328; KEGG: sth:STH2912 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: C1XLE8 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_003807670.1	COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: dol:Dole_3007 ABC transporter-related protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A8ZZ37 ABC transporter-related protein; PFAM: ABC transporter
YP_003807671.1	COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: dol:Dole_3008 ABC transporter-related protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A8ZZ38 ABC transporter-related protein; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter
YP_003807673.1	COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: dol:Dole_3010 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A8ZZ40 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003807674.1	COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dol:Dole_3011 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A8ZZ41 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003807675.1	InterPro IPR013424:IPR011449; KEGG: dba:Dbac_2542 hypothetical protein; PFAM: protein of unknown function DUF1555; SPTR: C7LS72 Putative uncharacterized protein; PFAM: PEP-CTERM motif; TIGRFAM: PEP-CTERM  exosortase interaction domain
YP_003807677.1	InterPro IPR006444; KEGG: pap:PSPA7_5150  phage-related protein; PFAM: major capsid protein HK97; SPTR: A6VBQ1 Putative phage-related protein; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family
YP_003807678.1	COGs: COG3740 Phage head maturation protease; InterPro IPR006433; KEGG: pap:PSPA7_5151 HK97 family phage prohead protease; PFAM: peptidase U35 phage prohead HK97; SPTR: A9FSW2 Prohead protease; TIGRFAM: phage prohead protease, HK97 family; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family
YP_003807679.1	InterPro IPR010093:IPR009061; KEGG: lrl:LC705_01062 predicted ORF; SPTR: C7TI67 Putative uncharacterized protein; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family
YP_003807681.1	InterPro IPR015330:IPR000276; KEGG: apt:APA01_26890 DNA recombinase RecA; PFAM: Bifunctional DNA primase/polymerase; SPTR: C6N3S3 Putative truncated Phage / plasmid primase P4; PFAM: Bifunctional DNA primase/polymerase, N-terminal
YP_003807682.1	InterPro IPR003615:IPR002711; KEGG: dvu:DVU1505 holin, PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Q72BX9 Holin, manually curated; PFAM: HNH endonuclease
YP_003807683.1	COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: pap:PSPA7_5155 phage terminase, large subunit, PFAM: Terminase; SPTR: A6VBQ6 Phage terminase, large subunit, PFAM: Phage Terminase
YP_003807684.1	InterPro IPR012337:IPR009057:IPR001584; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain
YP_003807685.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011010:IPR010998:IPR002104:IPR013762; KEGG: rxy:Rxyl_1592 phage integrase; PFAM: integrase family protein; SPTR: Q1AVM4 Phage integrase; PFAM: Phage integrase family
YP_003807686.1	COGs: COG0196 FAD synthase; InterProIPR002606:IPR015865:IPR015864:IPR014729:IPR 001412; KEGG: dba:Dbac_2972 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; SPTR: C7LV43 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase
YP_003807687.1	COGs: COG2262 GTPase; InterPro IPR016496:IPR005225:IPR002917:IPR006073; KEGG: drt:Dret_2283 GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; SPTR: Q1NSQ7 GTP-binding protein, HSR1-related; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain
YP_003807688.1	COGs: COG0305 Replicative DNA helicase; InterProIPR007692:IPR003593:IPR007693:IPR007694:IPR 016136; KEGG: sat:SYN_00640 replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: ATPase AAA; SPTR: Q2LUJ4 Replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase
YP_003807689.1	COGs: COG0359 ribosomal protein L9; InterPro IPR020594:IPR020069:IPR009027:IPR020070; KEGG: dde:Dde_1410 50S ribosomal protein L9; PFAM: ribosomal protein L9-like; SPTR: A4TZ49 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9, N-terminal domain; ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9
YP_003807690.1	COGs: COG0238 ribosomal protein S18; InterPro IPR001648:IPR018275; KEGG: gur:Gura_3677 30S ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: A5G7R2 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; TIGRFAM: ribosomal protein S18
YP_003807691.1	COGs: COG0360 ribosomal protein S6; InterPro IPR000529:IPR020814:IPR014717; KEGG: dat:HRM2_18640 RpsF; PFAM: ribosomal protein S6, bacterial-like; SPTR: C0QBV4 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; TIGRFAM: ribosomal protein S6
YP_003807692.1	InterPro IPR015797:IPR000086; KEGG: mav:MAV_1301 hydrolase, NUDIX family protein; PFAM: NUDIX hydrolase; SPTR: A0QCA8 Hydrolase, NUDIX family protein; PFAM: NUDIX domain
YP_003807693.1	InterPro IPR019734:IPR001440:IPR011990:IPR013026; KEGG: sfu:Sfum_0684 hypothetical protein; PFAM: hypothetical protein; SPTR: A0LG31 hypothetical protein
YP_003807694.1	COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR005839:IPR006638:IPR013848:IPR007197; KEGG: sfu:Sfum_0166 RNA modification protein; PFAM: radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; SPTR: A0LEL6 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: RNA modification enzyme, MiaB family
YP_003807695.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR015424:IPR004839:IPR015421:IPR015422:IPR 001176:IPR004838; KEGG: dal:Dalk_0567 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: B8FHI5 Aminotransferase class I and II; PFAM: Aminotransferase class I and II
YP_003807696.1	KEGG: sfu:Sfum_2838 hypothetical protein; SPTR: A0LM64 Conserved hypothetical cytosolic protein
YP_003807697.1	KEGG: ote:Oter_0976 hypothetical protein; SPTR: B1ZXP2 Putative uncharacterized protein
YP_003807698.1	COGs: COG2206 HD-GYP domain; InterPro IPR006674; KEGG: amc:MADE_03089 metal-dependent phosphohydrolase domain; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: B4RVV1 Metal-dependent phosphohydrolase domain; PFAM: HD domain
YP_003807699.1	KEGG: tko:TK0024 hypothetical protein; SPTR: Q5JED6 Putative uncharacterized protein
YP_003807700.1	InterPro IPR005358:IPR002345; KEGG: dol:Dole_1894 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: A8ZSG1 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)
YP_003807701.1	COGs: COG3086 Positive regulator of sigma E activity; InterPro IPR007359; KEGG: dol:Dole_2512 positive regulator of sigma E, RseC/MucC; PFAM: Positive regulator of sigma(E) RseC/MucC; SPTR: A8ZW82 Positive regulator of sigma E, RseC/MucC; PFAM: Positive regulator of sigma(E), RseC/MucC
YP_003807702.1	InterPro IPR006016:IPR014729; KEGG: dol:Dole_0159 UspA domain-containing protein; PFAM: UspA domain protein; SPTR: A8ZSQ6 UspA domain protein; PFAM: Universal stress protein family
YP_003807703.1	COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR006311:IPR019546:IPR003374:IPR017909; KEGG: dal:Dalk_5059 ApbE family lipoprotein; PFAM: ApbE family lipoprotein; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: B8FDU9 ApbE family lipoprotein; PFAM: TAT (twin-arginine translocation) pathway signal sequence; ApbE family; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003807704.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR010207:IPR009051:IPR007202:IPR001450:IPR 013027:IPR012285:IPR000759:IPR017896:IPR017900; KEGG: dal:Dalk_0215 dihydropyrimidine dehydrogenase (NADP(+)); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; SPTR: B8FMQ7 Dihydropyrimidine dehydrogenase (NADP(+)); TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Putative Fe-S cluster; 4Fe-4S binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit
YP_003807705.1	COGs: COG4657 NADH:ubiquinone oxidoreductase subunit RnfA; InterPro IPR011293:IPR003667; KEGG: pca:Pcar_0265 NADH:ubiquinone oxidoreductase, RnfA subunit-like; PFAM: RnfA-Nqr electron transport subunit; SPTR: Q3A7W6 electron transport complex protein rnfA; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit
YP_003807706.1	COGs: COG4660 NADH:ubiquinone oxidoreductase subunit RnfE; InterPro IPR010968:IPR003667; KEGG: dol:Dole_2827 electron transport complex RsxE subunit; PFAM: RnfA-Nqr electron transport subunit; SPTR: A8ZY03 electron transport complex, RnfABCDGE type, E subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit
YP_003807707.1	COGs: COG4659 NADH:ubiquinone oxidoreductase subunit RnfG; InterPro IPR010209:IPR007329; KEGG: drt:Dret_0530 electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; SPTR: C8WYR1 electron transport complex, RnfABCDGE type, G subunit; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit
YP_003807708.1	COGs: COG4658 NADH:ubiquinone oxidoreductase subunit RnfD; InterPro IPR011303:IPR004338; KEGG: tmz:Tmz1t_2992 electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; SPTR: C4KB15 electron transport complex, RnfABCDGE type, D subunit; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit
YP_003807709.1	COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC; InterProIPR010208:IPR009051:IPR011538:IPR019554:IPR 001450:IPR017896:IPR017900; KEGG: tex:Teth514_0079 electron transport complex, RnfABCDGE type, C subunit; PFAM: Soluble ligand binding domain; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C6Q6M5 electron transport complex, RnfABCDGE type, C subunit; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit
YP_003807710.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterProIPR001789:IPR003661:IPR003594:IPR011006:IPR 009082:IPR004358:IPR005467; KEGG: ote:Oter_3856 response regulator receiver sensor signal transduction histidine kinase; PFAM: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: B1ZZ58 Sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003807711.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006; KEGG: mpd:MCP_2581  response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FJ25 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003807712.1	InterPro IPR016181:IPR000182; KEGG: bja:blr2886 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: A0Y7P0 Putative uncharacterized protein; PFAM: acetyltransferase (GNAT) family
YP_003807713.1	COGs: COG4231 indolepyruvate ferredoxin oxidoreductase alpha and subunit betas; InterProIPR017721:IPR009014:IPR011766:IPR001450:IPR 017896:IPR017900; KEGG: dal:Dalk_5039 indolepyruvate ferredoxin oxidoreductase, subunit alpha; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: indolepyruvate ferredoxin oxidoreductase; SPTR: B8FDS9 indolepyruvate ferredoxin oxidoreductase, subunit alpha; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, subunit alpha; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, subunit alpha
YP_003807714.1	COGs: COG1014 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit gamma; InterPro IPR002869:IPR019752; KEGG: dal:Dalk_5038 indolepyruvate ferredoxin oxidoreductase; PFAM: pyruvate/ketoisovalerate oxidoreductase; PRIAM: indolepyruvate ferredoxin oxidoreductase; SPTR: B8FDS8 indolepyruvate ferredoxin oxidoreductase; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, subunit beta
YP_003807715.1	COGs: COG1290 cytochrome b subunit of the bc complex; InterPro IPR016174:IPR005797:IPR016175; KEGG: sth:STH3148 menaquinol-cycothcome C reductase; PFAM: cytochrome b/b6 domain; SPTR: Q67JM0 Menaquinol-cytochrome C reductase; PFAM: cytochrome b(N-terminal)/b6/petB
YP_003807716.1	COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941:IPR005805:IPR017909; KEGG: sth:STH3146 plastoquinol--plastocyanin reductase; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Q67JM2 Plastoquinol--plastocyanin reductase; PFAM: Rieske [2Fe-2S] domain
YP_003807717.1	InterPro IPR005798; KEGG: afw:Anae109_0242 cytochrome b/b6 domain-containing protein; SPTR: A7H6W4 cytochrome b
YP_003807718.1	InterPro IPR011031; KEGG: sse:Ssed_4024 hypothetical protein; SPTR: A8G0K5 Putative uncharacterized protein
YP_003807719.1	InterPro IPR011031; KEGG: gme:Gmet_0536 cycothcome C family protein; SPTR: Q39Y95 cycothcome C family protein
YP_003807720.1	KEGG: sfu:Sfum_3363 hypothetical protein; SPTR: A0LNN4 Putative uncharacterized protein
YP_003807721.1	InterPro IPR001455; KEGG: bay:RBAM_005450 YrkF; PFAM: SirA family protein; SPTR: C8R0L0 SirA family protein; PFAM: SirA-like protein
YP_003807722.1	InterPro IPR007272; KEGG: mgm:Mmc1_1601 protein of unknown function DUF395, YeeE/YedE; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: C0GRH3 Putative uncharacterized protein; PFAM: YeeE/YedE family (DUF395)
YP_003807723.1	InterProIPR019734:IPR000297:IPR011717:IPR001440:IPR 011990:IPR013026; KEGG: dal:Dalk_4303 hypothetical protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; Tetratricopeptide TPR_4; hypothetical protein; SPTR: B8FME5 hypothetical protein; PFAM: Tetratricopeptide repeat; PPIC-type PPIASE domain
YP_003807724.1	KEGG: dps:DP3078 hypothetical protein; SPTR: Q1NNL1 Putative uncharacterized protein
YP_003807725.1	KEGG: dol:Dole_2107 hypothetical protein; SPTR: A8ZTX8 Putative uncharacterized protein
YP_003807726.1	InterPro IPR003718; KEGG: cli:Clim_1429 OsmC family protein; PFAM: OsmC family protein; SPTR: B3ED64 OsmC family protein; PFAM: OsmC-like protein
YP_003807727.1	COGs: COG1270 Cobalamin biosynthesis protein CobD/CbiB; InterPro IPR004485; KEGG: kpu:KP1_4465 hypothetical protein; PFAM: cobalamin biosynthesis protein CbiB; SPTR: C7C5E5 Cobalamin biosynthesis protein cobD; TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD
YP_003807728.1	COGs: COG1267 phosphatidylglycerophosphatase A and related protein; InterPro IPR007686; KEGG: cpb:Cphamn1_1827 phosphatidylglycerophosphatase A; PFAM: phosphatidylglycerophosphatase A; SPTR: B3ELF7 phosphatidylglycerophosphatase A; PFAM: phosphatidylglycerophosphatase A
YP_003807729.1	COGs: COG2861 conserved hypothetical protein; InterPro IPR006837; KEGG: sfu:Sfum_3062 protein of unknown function DUF610, YibQ; PFAM: protein of unknown function DUF610 YibQ; SPTR: A0LMT4 Putative uncharacterized protein; PFAM: Divergent polysaccharide deacetylase
YP_003807730.1	COGs: COG0793 Periplasmic protease; InterPro IPR004447:IPR001478:IPR005151; KEGG: gme:Gmet_1853 peptidase S41A, C-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Q39UJ2 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_003807731.1	COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR011055:IPR016047; KEGG: aeh:Mlg_2569 peptidase M23B; PFAM: peptidase M23; SPTR: Q0A5H8 peptidase M23B; PFAM: peptidase family M23
YP_003807732.1	COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: afw:Anae109_0711 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: A7H878 Putative uncharacterized protein; PFAM: Predicted permease
YP_003807733.1	COGs: COG2884 ATPase involved in cell division; InterPro IPR005286:IPR003593:IPR003439:IPR017871; KEGG: sth:STH139 cell-division ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q67T69 Cell-division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE
YP_003807734.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sat:SYN_01010 type I secretion outer membrane protein; PFAM: outer membrane efflux protein; SPTR: Q2LSG0 Type I secretion outer membrane protein; PFAM: Outer membrane efflux protein
YP_003807735.1	InterPro IPR001173; KEGG: mex:Mext_0845 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: A9W0Z4 glycosyl transferase family 2; PFAM: glycosyl transferase family 2
YP_003807736.1	InterPro IPR011990:IPR013026; KEGG: rca:Rcas_3987 hypothetical protein; SPTR: B6BDR6 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110kDa subunit
YP_003807737.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: tro:trd_1606 dolichyl-phosphate mannose synthase related protein; PFAM: glycosyl transferase family 2; SPTR: B9L0B3 Dolichyl-phosphate mannose synthase related protein; PFAM: glycosyl transferase family 2
YP_003807738.1	InterPro IPR005242; KEGG: gme:Gmet_1389 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: Q39VV1 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_003807739.1	KEGG: mch:Mchl_4214 sulfoacetaldehyde acetyltransferase; SPTR: B7L185 Sulfoacetaldehyde acetyltransferase
YP_003807740.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: dol:Dole_1483 hypothetical protein; SPTR: A8ZZD4 Putative uncharacterized protein; PFAM: Putative lysophospholipase
YP_003807741.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: ctt:CtCNB1_4404 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: D0IUZ3 Long-chain-fatty-acid--CoA ligase; PFAM: AMP-binding enzyme
YP_003807742.1	KEGG: dvu:DVU0040 hypothetical protein; SPTR: Q72G21 Putative uncharacterized protein
YP_003807743.1	InterPro IPR009057:IPR001647:IPR012287; KEGG: mpt:Mpe_A2962 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C5SCW5 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003807744.1	COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: gur:Gura_3497 RND efflux system outer membrane lipoprotein; PFAM: outer membrane efflux protein; SPTR: A5G784 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_003807745.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR001036; KEGG: lhk:LHK_02130 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; SPTR: C1D9L2 Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_003807746.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: gme:Gmet_0809 secretion protein HlyD; PFAM: secretion protein HlyD family protein; SPTR: Q39XH3 Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; manually curated; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003807747.1	KEGG: sfu:Sfum_3828 hypothetical protein; SPTR: A0LPZ5 Putative uncharacterized protein
YP_003807748.1	InterPro IPR008727; KEGG: sfu:Sfum_3827 PaaR repeat-containing protein; SPTR: Q310H1 Putative uncharacterized protein; PFAM: PAAR motif
YP_003807749.1	KEGG: sfu:Sfum_3826 hypothetical protein; SPTR: A0LPZ3 Putative uncharacterized protein
YP_003807750.1	KEGG: sfu:Sfum_3825 hypothetical protein; SPTR: A0LPZ2 Putative uncharacterized protein; PFAM: Phage-related baseplate assembly protein
YP_003807751.1	InterPro IPR010767; KEGG: dde:Dde_0940 hypothetical protein; PFAM: protein of unknown function DUF1353; SPTR: C6MK65 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1353)
YP_003807752.1	InterPro IPR009045:IPR013230; KEGG: dde:Dde_1882 hypothetical protein; PFAM: peptidase M15A; SPTR: Q310G7 Putative uncharacterized protein; PFAM: peptidase M15
YP_003807753.1	COGs: COG3500 Phage protein D; KEGG: dde:Dde_0938 phage protein D-like; SPTR: Q314A7 Phage protein D-like; PFAM: Phage late control gene D protein (GPD)
YP_003807754.1	KEGG: dde:Dde_0937 hypothetical protein; SPTR: C6MK62 Putative uncharacterized protein
YP_003807755.1	KEGG: sfu:Sfum_3820 hypothetical protein; SPTR: Q310G5 Putative uncharacterized protein
YP_003807756.1	KEGG: sfu:Sfum_3819 hypothetical protein; SPTR: A0LPY6 Putative uncharacterized protein
YP_003807757.1	InterPro IPR010090; KEGG: sfu:Sfum_3818 TP901 family phage tail tape measure protein; PFAM: tail tape measure protein TP901 core region; SPTR: A0LPY5 Phage tail tape measure protein, TP901 family; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: Phage-related minor tail protein; TIGRFAM: phage tail tape measure protein, TP901 family, core region
YP_003807758.1	KEGG: sfu:Sfum_3817 hypothetical protein; SPTR: A0LPY4 Putative uncharacterized protein
YP_003807759.1	InterPro IPR011747; KEGG: sfu:Sfum_3816 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C6MK57 Putative uncharacterized protein; PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein
YP_003807760.1	COGs: COG3497 Phage tail sheath protein FI; InterPro IPR007067; KEGG: sfu:Sfum_3815 phage tail sheath protein; PFAM: tail sheath protein; SPTR: C6MK56 Tail sheath protein; PFAM: Phage tail sheath protein
YP_003807761.1	KEGG: sfu:Sfum_3814 hypothetical protein; SPTR: C6MK55 Putative uncharacterized protein
YP_003807762.1	KEGG: sfu:Sfum_3813 hypothetical protein; SPTR: C6MK54 Putative uncharacterized protein
YP_003807763.1	InterPro IPR011075:IPR009057:IPR001647:IPR015893; KEGG: dat:HRM2_00670 HTH-type transcriptional regulator (TetR-family protein); PFAM: regulatory protein TetR; SPTR: Q2N4Y3 Transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family; YsiA-like protein, C-terminal region
YP_003807764.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dat:HRM2_00680 HlyD; PFAM: secretion protein HlyD family protein; SPTR: Q1JW26 Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003807765.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dat:HRM2_00690 ABC-type transporter, predicted premease protein; PFAM: protein of unknown function DUF214; SPTR: Q1JW27 Putative uncharacterized protein; manually curated; PFAM: Predicted permease
YP_003807766.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: dat:HRM2_00700 ABC-type transporter, predicted ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q1K3J3 ABC transporter related; PFAM: ABC transporter
YP_003807767.1	InterPro IPR010980:IPR002321; KEGG: tbd:Tbd_1357 hypothetical protein; SPTR: Q1K3J4 Putative uncharacterized protein; manually curated; PFAM: cytochrome C'
YP_003807768.1	COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: dat:HRM2_00710 proton-shuffling outer membrane efflux protein (OprM-like); PFAM: outer membrane efflux protein; SPTR: Q1JW30 RND efflux system, outer membrane lipoprotein, NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_003807769.1	KEGG: sfu:Sfum_3812 hypothetical protein; SPTR: A0LPX9 Putative uncharacterized protein; PFAM: Bacteriophage protein of unknown function (DUF646)
YP_003807770.1	KEGG: sfu:Sfum_3811 hypothetical protein; SPTR: A0LPX8 Putative uncharacterized protein
YP_003807771.1	KEGG: sfu:Sfum_3810 hypothetical protein; SPTR: C6MK51 Putative uncharacterized protein
YP_003807772.1	KEGG: dde:Dde_0925 hypothetical protein; SPTR: Q314C0 Putative uncharacterized protein
YP_003807773.1	KEGG: dde:Dde_0924 hypothetical protein; SPTR: Q314C1 Putative uncharacterized protein
YP_003807774.1	KEGG: dde:Dde_0923 hypothetical protein; SPTR: C6MK48 Putative uncharacterized protein
YP_003807775.1	COGs: COG3392 Adenine-specific DNA methylase; InterPro IPR002052:IPR002294:IPR012327; KEGG: dde:Dde_0922 adenine-specific DNA methylase-like protein; PFAM: D12 class N6 adenine-specific DNA methyltransferase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q314C3 Adenine-specific DNA methylase-like; PFAM: D12 class N6 adenine-specific DNA methyltransferase
YP_003807776.1	KEGG: dde:Dde_1905 hypothetical protein; SPTR: C6MK46 Putative uncharacterized protein
YP_003807777.1	KEGG: dde:Dde_0920 hypothetical protein; SPTR: Q314C5 Putative uncharacterized protein
YP_003807778.1	InterPro IPR006528; KEGG: dde:Dde_0919 phage  head morphogenesis protein, SPP1 gp7; PFAM:  head morphogenesis protein SPP1 gp7; SPTR: Q314C6 Phage  head morphogenesis protein, SPP1 gp7; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: Phage Mu protein F like protein; TIGRFAM: phage  head morphogenesis protein, SPP1 gp7 family
YP_003807779.1	KEGG: dde:Dde_1908 hypothetical protein; SPTR: Q310E1 Putative uncharacterized protein
YP_003807780.1	KEGG: dde:Dde_0917 hypothetical protein; SPTR: Q314C8 Putative uncharacterized protein; PFAM: Terminase-like family
YP_003807781.1	KEGG: dde:Dde_1910 hypothetical protein; SPTR: Q310D9 Putative uncharacterized protein
YP_003807782.1	KEGG: sfu:Sfum_3799 hypothetical protein; SPTR: Q310D8 Putative uncharacterized protein
YP_003807783.1	KEGG: sfu:Sfum_3798 hypothetical protein; SPTR: Q314D1 Putative uncharacterized protein
YP_003807784.1	KEGG: dde:Dde_1913 hypothetical protein; SPTR: Q310D6 Putative uncharacterized protein
YP_003807785.1	COGs: COG4974 Site-specific recombinase XerD; InterProIPR004107:IPR002104:IPR011010:IPR010998:IPR 013762; KEGG: sfu:Sfum_3796 phage integrase family protein; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: A0LPW3 Phage integrase family protein; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family
YP_003807786.1	KEGG: sfu:Sfum_3795 hypothetical protein; SPTR: A0LPW2 Putative uncharacterized protein
YP_003807787.1	KEGG: dde:Dde_1916 hypothetical protein; SPTR: Q310D3 Putative uncharacterized protein
YP_003807788.1	KEGG: sfu:Sfum_3793 hypothetical protein; SPTR: A0LPW0 Putative uncharacterized protein
YP_003807789.1	COGs: COG0358 DNA primase; InterPro IPR002694:IPR013264; KEGG: sfu:Sfum_3790 DNA primase catalytic core; PFAM: DNA primase catalytic core domain; SMART: zinc finger CHC2-family protein; SPTR: A0LPV7 DNA primase catalytic core, N-terminal domain; PFAM: DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core
YP_003807790.1	COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) subunit alpha - helicase superfamily I member; KEGG: dde:Dde_1922 ATP-dependent RecD/TraA family DNA helicase; SPTR: C6MK30 ATP-dependent RecD/TraA family DNA helicase; TIGRFAM: helicase, , RecD/TraA family
YP_003807791.1	COGs: COG1948 ERCC4-type nuclease; InterPro IPR006166:IPR011335:IPR020819; KEGG: sfu:Sfum_3788 ERCC4 domain-containing protein; PFAM: ERCC4 domain protein; SMART: ERCC4 domain protein; SPTR: C6MK29 ERCC4 domain protein
YP_003807792.1	InterPro IPR007731; KEGG: sfu:Sfum_3787 hypothetical protein; PFAM: protein of unknown function DUF669; SPTR: Q310C5 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF669)
YP_003807793.1	KEGG: sfu:Sfum_3786 hypothetical protein; SPTR: A0LPV3 Putative uncharacterized protein
YP_003807794.1	KEGG: sfu:Sfum_3785 hypothetical protein; SPTR: A0LPV2 Putative uncharacterized protein
YP_003807795.1	KEGG: sfu:Sfum_3784 hypothetical protein; SPTR: A0LPV1 Putative uncharacterized protein
YP_003807796.1	InterPro IPR018170:IPR014284; KEGG: dde:Dde_1928 sigma-24 (FecI-like); SPTR: C6MK24 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003807797.1	KEGG: dde:Dde_1929 hypothetical protein; SPTR: Q310C0 Putative uncharacterized protein
YP_003807798.1	KEGG: dde:Dde_1930 hypothetical protein; SPTR: Q310B9 Putative uncharacterized protein
YP_003807799.1	KEGG: sfu:Sfum_3780 hypothetical protein; SPTR: A0LPU7 Putative uncharacterized protein
YP_003807800.1	COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterProIPR006197:IPR006199:IPR019759:IPR015927:IPR 011991:IPR011056:IPR006200; KEGG: sfu:Sfum_3779 SOS-response transcriptional repressor, LexA; PFAM: peptidase S24/S26A/S26B, conserved region; LexA DNA-binding domain protein; SPTR: A0LPU6 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA binding domain; peptidase S24-like; TIGRFAM: SOS regulatory protein LexA
YP_003807801.1	KEGG: sfu:Sfum_3778 hypothetical protein; SPTR: C6MK19 Putative uncharacterized protein
YP_003807802.1	KEGG: dde:Dde_1934  bacteriophage-related protein; SPTR: Q310B5 Putative bacteriophage-related protein; PFAM: Protein of unknown function (DUF2924)
YP_003807803.1	COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: dde:Dde_1935 site-specific recombinase; PFAM: Resolvase domain; Recombinase; SPTR: Q310B4 Site-specific recombinase; PFAM: Recombinase; Resolvase, N terminal domain
YP_003807804.1	KEGG: sfu:Sfum_3775  phage-related protein; SPTR: A0LPU2 Putative phage-related protein; tmRNA as predicted by Rfam (RF00023), score 199.67
YP_003807805.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR020816:IPR000119:IPR010992; KEGG: dol:Dole_1031 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: C8QX16 histone family protein DNA-binding protein; PFAM: Bacterial DNA-binding protein
YP_003807806.1	COGs: COG0797 Lipoprotein; InterPro IPR005132:IPR007730:IPR009009:IPR012997; KEGG: dal:Dalk_2877 rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; SPTR: Q1JY74 Rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Sporulation related domain; TIGRFAM: rare lipoprotein A
YP_003807807.1	COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685:IPR010920:IPR011014:IPR011066; KEGG: hut:Huta_2837 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: C7NQI1 MscS Mechanosensitive ion channel; PFAM: Mechanosensitive ion channel
YP_003807808.1	COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: sfu:Sfum_1064 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: uracil phosphoribosyltransferase; SPTR: A0LH56 Bifunctional protein pyrR; PFAM: phosphoribosyl transferase domain
YP_003807809.1	KEGG: dat:HRM2_35720  methyl-accepting chemotaxis protein; SPTR: Q1NWQ8 Putative uncharacterized protein
YP_003807810.1	KEGG: hypothetical protein
YP_003807811.1	COGs: COG0703 shikimate kinase; InterPro IPR000623; KEGG: mba:Mbar_A3183 shikimate kinase; PFAM: shikimate kinase; SPTR: Q466X5 shikimate kinase; PFAM: shikimate kinase
YP_003807812.1	COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) subunit alpha - helicase superfamily I member; InterProIPR003583:IPR003593:IPR000445:IPR010994:IPR 006345; KEGG: dol:Dole_2348 RecD/TraA family helicase; PFAM: helix-hairpin-helix motif; SMART: ATPase AAA; Helix-hairpin-helix DNA-binding class 1; SPTR: A8ZVG5 Helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; PFAM: Viral (Superfamily 1) RNA helicase; TIGRFAM: helicase, , RecD/TraA family
YP_003807813.1	COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) subunit beta (contains helicase and exonuclease domains); InterPro IPR000212:IPR014016:IPR014017; KEGG: acp:A2cp1_1439 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: B8JH81 UvrD/REP helicase; PFAM: UvrD/REP helicase
YP_003807814.1	COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: ade:Adeh_2513 ATP-dependent nuclease subunit B-like; SPTR: Q2IKV6 ATP-dependent nuclease subunit B-like
YP_003807815.1	KEGG: sfu:Sfum_1914 hypothetical protein; SPTR: A0LJJ7 Putative uncharacterized protein
YP_003807816.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680:IPR011059; KEGG: mta:Moth_0462 amidohydrolase; PFAM: amidohydrolase; SPTR: Q2RL96 Amidohydrolase; PFAM: Amidohydrolase family
YP_003807817.1	COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR008254; KEGG: nth:Nther_0880 flavodoxin/nitric oxide synthase; PFAM: flavodoxin/nitric oxide synthase; SPTR: B2A899 Flavodoxin/nitric oxide synthase; PFAM: NADPH-dependent FMN reductase
YP_003807818.1	InterPro IPR007607; KEGG: tye:THEYE_A0051 hypothetical protein; PFAM: protein of unknown function DUF583; SPTR: B5YGX5 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF583
YP_003807819.1	KEGG: dol:Dole_2202 hypothetical protein; SPTR: A8ZUH4 Putative uncharacterized protein
YP_003807820.1	KEGG: mpn:MPN453 30K adhesin-related protein; SPTR: P75330 P30 adhesin
YP_003807821.1	COGs: COG3034 conserved hypothetical protein; InterPro IPR005490; KEGG: sat:SYN_02167 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: Q2LTB1 Tetratricopeptide repeat family protein; PFAM: L,D-transpeptidase catalytic domain
YP_003807822.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR017441:IPR006176:IPR006108:IPR001753:IPR 016040:IPR008927:IPR013328; KEGG: chy:CHY_1609 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; enoyl-CoA hydratase/isomerase; SPTR: Q3ABP7 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein; PFAM: enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_003807823.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155:IPR016038; KEGG: drm:Dred_0348 acetyl-CoA acetyltransferase; SPTR: A4J1E3 3-ketoacyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_003807824.1	KEGG: hypothetical protein; SPTR: C5M0N0 Putative uncharacterized protein
YP_003807825.1	COGs: COG4786 flagellar basal body rod protein; InterPro IPR001444:IPR010930:IPR020013; KEGG: rmr:Rmar_2233 flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: D0MDW8 flagellar basal-body rod protein FlgG; TIGRFAM: fagellar hook-basal body protein; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: fagellar hook-basal body proteins
YP_003807826.1	KEGG: rme:Rmet_4135 hypothetical protein; SPTR: Q1LFS4 Putative uncharacterized protein
YP_003807827.1	COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005833:IPR005834:IPR006402; KEGG: rci:RCIX511 beta-phosphoglucomutase; PFAM: haloacid dehalogenase; SPTR: Q0W6Q6 beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_003807828.1	COGs: COG0558 phosphatidylglycerophosphate synthase; InterPro IPR000462:IPR004570; KEGG: geo:Geob_2837 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: B9M264 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_003807829.1	COGs: COG0176 Transaldolase; InterPro IPR018225:IPR001585:IPR013785:IPR004731; KEGG: acp:A2cp1_4211 transaldolase; PFAM: Transaldolase; SPTR: Q2IGW6 Probable transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; TIGRFAM: transaldolase, , TalC family
YP_003807830.1	InterPro IPR011017; KEGG: sfu:Sfum_0052 TRASH domain-containing protein; SMART: TRASH domain protein; SPTR: A0LEA3 TRASH domain protein
YP_003807831.1	COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: xac:XAC1784 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; PRIAM:2-amino-4-hydroxy-6-hydroxymethyldihydropteri dinediphosphokinase; SPTR: B7A5Y7 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropte ridinepyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_003807832.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR004838:IPR004839:IPR015424:IPR015421:IPR 019881; KEGG: sfu:Sfum_0054 aminotransferase, class I and II; PFAM: aminotransferase class I and II; SPTR: A0LEA5 LL-diaminopimelate aminotransferase; TIGRFAM: LL-diaminopimelate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: LL-diaminopimelate aminotransferase
YP_003807833.1	COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529:IPR011234; KEGG: pmo:Pmob_0980 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; PRIAM: 5-carboxymethyl-2-hydroxymuconate delta-isomerase; SPTR: A9BJV9 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Domain of unknown function (DUF2437); Fumarylacetoacetate (FAA) hydrolase family
YP_003807834.1	COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR000846:IPR016040:IPR011770; KEGG: psa:PST_3325 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Q6VAY4 Dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase
YP_003807835.1	COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR020624:IPR002220:IPR013785:IPR005263; KEGG: sfu:Sfum_0056 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: A0LEA7 Dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase
YP_003807836.1	COGs: COG0253 Diaminopimelate epimerase; InterPro IPR018510:IPR001653; KEGG: dal:Dalk_0413 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: B8FH34 Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase
YP_003807837.1	COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR002986:IPR009006; KEGG: gsu:GSU0158 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Q74GT7 Diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: pyridoxal-dependent decarboxylase, C-terminal sheet domain; pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase
YP_003807838.1	InterPro IPR003961:IPR008957; KEGG: sus:Acid_1064 fibronectin, type III domain-containing protein; PFAM: fibronectin type III domain protein; SPTR: Q02A64 fibronectin, type III domain protein; PFAM: fibronectin type III domain
YP_003807839.1	COGs: COG0165 Argininosuccinate lyase; InterProIPR020557:IPR003031:IPR000362:IPR008948:IPR 009049; KEGG: dma:DMR_26520 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: C4XUC1 Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase
YP_003807840.1	COGs: COG0137 Argininosuccinate synthase; InterPro IPR018223:IPR001518:IPR014729; KEGG: dal:Dalk_0409 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: B8FH30 Argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase
YP_003807841.1	COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006130:IPR002292:IPR006132:IPR006131; KEGG: dps:DP0437 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; PRIAM: Ornithine carbamoyltransferase; SPTR: Q6AR58 Ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase
YP_003807842.1	COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterProIPR005814:IPR015424:IPR015422:IPR015421:IPR 004636; KEGG: sfu:Sfum_0063 acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: A0LEB4 Acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases
YP_003807843.1	COGs: COG0548 Acetylglutamate kinase; InterPro IPR001048:IPR011148:IPR004662; KEGG: tgr:Tgr7_0104 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: Acetylglutamate kinase; SPTR: B8GTE7 Acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase
YP_003807844.1	COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; InterPro IPR003593:IPR013093:IPR004491; KEGG: sfu:Sfum_0065 ATP-dependent protease ATP-binding subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: ATPase AAA; SPTR: A0LEB6 Heat shock protein HslVU, ATPase subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: heat shock protein HslVU, ATPase subunit HslU
YP_003807845.1	COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; InterPro IPR001353; KEGG: aeh:Mlg_0066 ATP-dependent protease peptidase subunit; PFAM: 20S proteasome A and B subunits; SPTR: Q0ACL4 ATP-dependent protease hslV; PFAM: Proteasome subunit
YP_003807846.1	COGs: COG4974 Site-specific recombinase XerD; InterProIPR004107:IPR002104:IPR011010:IPR010998:IPR 013762; KEGG: gbm:Gbem_0470 tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: B5EBN0 Tyrosine recombinase XerC; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family
YP_003807847.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013217; KEGG: npu:Npun_F0952 methyltransferase type 11; PFAM: methyltransferase type 12; SPTR: B2IUB2 methyltransferase type 11; PFAM: methyltransferase domain
YP_003807848.1	COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795:IPR004161:IPR005517:IPR000640:IPR 020568:IPR009000:IPR009022:IPR014721:IPR004540:IPR005225; KEGG: sfu:Sfum_0068 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein; SPTR: A0LEB9 Translation elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_003807849.1	COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR008284:IPR001453:IPR020817; KEGG: sfu:Sfum_0070 molybdenum cofactor synthesis domain-containing protein; PFAM: molybdopterin binding domain; SPTR: A0LEC1 Molybdopterin adenylyltransferase; TIGRFAM: molybdenum cofactor synthesis domain protein; manually curated; PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain
YP_003807850.1	COGs: COG1661 DNA-binding protein with PD1-like DNA-binding motif; KEGG: dma:DMR_35880 hypothetical protein; SPTR: C4XLE0 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF296)
YP_003807851.1	COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136:IPR013785; KEGG: mta:Moth_0946 2-nitropropane dioxygenase, NPD; PFAM: 2-nitropropane dioxygenase NPD; SPTR: Q2RJX7 2-nitropropane dioxygenase, NPD; PFAM: 2-nitropropane dioxygenase
YP_003807852.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR013785:IPR006268; KEGG: tte:TTE1013 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; SPTR: Q8R5T1 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_003807853.1	COGs: COG1656 conserved hypothetical protein; InterPro IPR002782; KEGG: sfu:Sfum_0072 hypothetical protein; PFAM: protein of unknown function DUF82; SPTR: A0LEC3 Putative uncharacterized protein; PFAM: Protein of unknown function DUF82
YP_003807854.1	KEGG: ade:Adeh_4035 hypothetical protein; SPTR: Q2IGT8 Putative uncharacterized protein
YP_003807855.1	COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR019734:IPR013105:IPR001440:IPR011717:IPR 013026:IPR011990; KEGG: sfu:Sfum_0074 hypothetical protein; PFAM: hypothetical protein; hypothetical protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide repeat; SPTR: A0LEC5 hypothetical protein; PFAM: Tetratricopeptide repeat
YP_003807856.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR000943:IPR007627:IPR007630:IPR013325:IPR 013324:IPR011991:IPR014284; KEGG: sfu:Sfum_2115 sigma-70 region 2 domain-containing protein; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; SPTR: A0LK46 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; alternative sigma factor RpoH
YP_003807857.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639:IPR000073; KEGG: sgr:SGR_2353  hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: C9ZBT5 Putative hydrolase; PFAM: alpha/beta hydrolase fold
YP_003807858.1	COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR006668:IPR000644:IPR006667:IPR006669; KEGG: pca:Pcar_0596 magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; SPTR: Q3A6Z6 Magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular N domain; Divalent cation transporter; CBS domain; TIGRFAM: Mg2+ transporter (mgtE)
YP_003807859.1	COGs: COG1381 Recombinational DNA repair protein (RecF pathway); InterPro IPR003717; KEGG: ade:Adeh_1303 DNA replication and repair protein RecO; PFAM: Recombination protein O RecO; SPTR: C8QXV6 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO
YP_003807860.1	COGs: COG1775 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: adg:Adeg_0480 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; SPTR: C9RBK4 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component
YP_003807861.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR002744:IPR019591; KEGG: mes:Meso_4025 hypothetical protein; PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; SPTR: B6R846 Mrp protein; PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; ATPase MipZ
YP_003807862.1	COGs: COG0694 thioredoxin-like protein and domains; InterPro IPR001075; KEGG: tpd:Teth39_0754 NifU domain-containing protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: B0K8A0 Nitrogen-fixing NifU domain protein; PFAM: NifU-like domain
YP_003807863.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845:IPR000873; KEGG: dal:Dalk_2448 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FB55 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003807864.1	COGs: COG3825 conserved hypothetical protein; InterPro IPR008912; KEGG: gme:Gmet_0107 hypothetical protein; PFAM: VWA containing CoxE family protein; SPTR: Q39ZG8 Putative uncharacterized protein; PFAM: VWA domain containing CoxE-like protein
YP_003807865.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR003959; KEGG: dae:Dtox_3608 ATPase AAA; PFAM: ATPase AAA; SMART: ATPase AAA; SPTR: C8VW33 ATPase AAA; PFAM: ATPase family associated with various cellular activities (AAA)
YP_003807866.1	KEGG: dsa:Desal_1511 hypothetical protein; SPTR: C6BS97 Putative uncharacterized protein
YP_003807867.1	COGs: COG0591 Na+/proline symporter; InterPro IPR018212:IPR001734:IPR019900; KEGG: dsa:Desal_1510 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: C6BS96 Na+/solute symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily
YP_003807868.1	KEGG: dol:Dole_2440 hypothetical protein; SPTR: A8ZW10 Putative uncharacterized protein
YP_003807869.1	COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: mxa:MXAN_5908 histone deacetylase family protein; PFAM: histone deacetylase superfamily; SPTR: Q1CZX8 histone deacetylase family protein; PFAM: histone deacetylase domain
YP_003807870.1	COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; InterPro IPR003837; KEGG: sfu:Sfum_3504 glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; SPTR: A0LP23 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
YP_003807871.1	COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR020556:IPR000120:IPR004412; KEGG: dal:Dalk_4493 glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: amidase; SPTR: B8FCK9 Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
YP_003807872.1	KEGG: hypothetical protein LOC100014749; SPTR: C5WGG8 Truncated apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
YP_003807873.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: dal:Dalk_0151 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: B8FMJ4 thioesterase superfamily protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003807874.1	COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: bbe:BBR47_28890 hypothetical protein; PFAM: aldo/keto reductase; SPTR: C0ZDK7 Putative uncharacterized protein; PFAM: Aldo/keto reductase family
YP_003807875.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR002078:IPR020441:IPR001789:IPR003593:IPR 002197:IPR011006:IPR009057; KEGG: drt:Dret_0077 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: C8WZA4 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003807876.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR004358:IPR003661:IPR003594:IPR009082:IPR 005467; KEGG: sfu:Sfum_0854 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: A0LGJ9 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003807877.1	COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001672; KEGG: hor:Hore_19060 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); SPTR: B8CZD5 Glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase
YP_003807878.1	KEGG: sat:SYN_03569  cytoplasmic protein; SPTR: Q2LTN7 Hypothetical cytosolic protein
YP_003807879.1	COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593:IPR003959; KEGG: dol:Dole_2133 recombination factor protein RarA; PFAM: ATPase AAA; SMART: ATPase AAA; SPTR: A8ZU04 ATPase AAA; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA)
YP_003807880.1	COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641:IPR016035; KEGG: sfu:Sfum_1691 patatin; PFAM: patatin; SPTR: A0LIX6 patatin; PFAM: patatin-like phospholipase
YP_003807881.1	InterPro IPR018278:IPR001911; KEGG: pca:Pcar_2255 30S ribosomal protein S21; SPTR: Q1JW03 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; manually curated; PFAM: ribosomal protein S21; TIGRFAM: ribosomal protein S21
YP_003807882.1	COGs: COG1280 Putative threonine efflux protein; InterPro IPR001123; KEGG: cth:Cthe_0680 lysine exporter protein LysE/YggA; PFAM: lysine exporter protein (LYSE/YGGA); SPTR: A3DD86 lysine exporter protein (LYSE/YGGA); PFAM: LysE type translocator
YP_003807883.1	KEGG: scl:sce3108 hypothetical protein; SPTR: A8RMA2 Putative uncharacterized protein
YP_003807884.1	COGs: COG1362 Aspartyl aminopeptidase; InterPro IPR001948; KEGG: dol:Dole_2226  aminopeptidase 1; PFAM: peptidase M18 aminopeptidase I; SPTR: A8ZUJ8 M18 family aminopeptidase; PFAM: Aminopeptidase I zinc metalloprotease (M18)
YP_003807885.1	COGs: COG1189 rRNA methylase; InterPro IPR002942:IPR002877:IPR004538; KEGG: ppd:Ppro_1155 hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein; SPTR: A1AN58 Hemolysin A; TIGRFAM: hemolysin A; PFAM: S4 domain; FtsJ-like methyltransferase; TIGRFAM: hemolysin TlyA family protein
YP_003807886.1	COGs: COG1154 Deoxyxylulose-5-phosphate synthase; InterProIPR020826:IPR005475:IPR005476:IPR009014:IPR 015941:IPR005477; KEGG: gsu:GSU0686 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: transketolase; transketolase; SPTR: Q74FC3 1-deoxy-D-xylulose-5-phosphate synthase 1; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase
YP_003807887.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092:IPR008949; KEGG: gsu:GSU1765 geranyltranstransferase; PFAM: polyprenyl synthetase; SPTR: Q74CA9 Geranyltranstransferase; PFAM: polyprenyl synthetase
YP_003807888.1	InterPro IPR003761; KEGG: bba:Bd0198 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; SPTR: Q6MR96 Exodeoxyribonuclease 7 small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit
YP_003807889.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR011055; KEGG: dvm:DvMF_0123 peptidase M23; PFAM: peptidase M23; SPTR: B8DNM7 peptidase M23; PFAM: peptidase family M23
YP_003807890.1	COGs: COG1570 Exonuclease VII large subunit; InterPro IPR004365:IPR020579:IPR003753; KEGG: avn:Avin_39770 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; SPTR: C1DE08 Exodeoxyribonuclease 7 large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; OB-fold nucleic acid binding domain; TIGRFAM: exodeoxyribonuclease VII, large subunit
YP_003807891.1	InterPro IPR007730; KEGG: pla:Plav_0031 sporulation domain-containing protein; PFAM: Sporulation domain protein; SPTR: A7HP21 Sporulation domain protein; PFAM: Sporulation related domain
YP_003807892.1	COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR010280:IPR002792:IPR016027:IPR001566; KEGG: ppd:Ppro_1783 RNA methyltransferase; PFAM: deoxyribonuclease/rho motif-related TRAM; (uracil-5)-methyltransferase; SPTR: A1APX5 RNA methyltransferase, TrmA family; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: TRAM domain; tRNA (uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA
YP_003807893.1	COGs: COG1639 signal transduction protein; InterPro IPR003607:IPR013976:IPR006675; KEGG: aoe:Clos_2504 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: A8MJQ4 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG
YP_003807894.1	KEGG: gsu:GSU3079 hypothetical protein; SPTR: Q748C8 Putative uncharacterized protein
YP_003807895.1	COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611; KEGG: dvm:DvMF_2935 PfkB domain protein; PFAM: PfkB domain protein; SPTR: B8DSB7 PfkB domain protein; PFAM: pfkB family carbohydrate kinase
YP_003807896.1	KEGG: mex:Mext_4302 hypothetical protein; SPTR: B6R8A8 Putative uncharacterized protein
YP_003807897.1	COGs: COG2848 conserved hypothetical protein; InterPro IPR007841; KEGG: adg:Adeg_1269 protein of unknown function DUF711; PFAM: protein of unknown function DUF711; SPTR: C9R7V0 Putative uncharacterized protein; PFAM: Uncharacterized ACR (DUF711)
YP_003807898.1	COGs: COG3830 ACT domain-containing protein; InterPro IPR002912; KEGG: mvu:Metvu_1156 ACT domain-containing protein; PFAM: amino acid-binding ACT domain protein; SPTR: C9RHG2 ACT domain-containing protein; PFAM: ACT domain
YP_003807899.1	COGs: COG0177 EndoIII-related endonuclease; InterProIPR004035:IPR004036:IPR003265:IPR003651:IPR 011257:IPR005759; KEGG: ace:Acel_1993 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: A0LWF5 endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III
YP_003807900.1	COGs: COG0652 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130:IPR015891; KEGG: dma:DMR_18750 peptidyl-prolyl cis-trans isomerase B; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; PRIAM: peptidylprolyl isomerase; SPTR: C4XQK1 peptidyl-prolyl cis-trans isomerase B; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_003807901.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004090:IPR003660:IPR004089:IPR013163; KEGG: gme:Gmet_1078 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Q39WQ6 methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003807902.1	COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: dol:Dole_2835 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: A8ZY11 Putative uncharacterized protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2
YP_003807903.1	COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: dal:Dalk_2789 RNA-metabolising metallo-beta-lactamase; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: B8FKV9 RNA-metabolising metallo-beta-lactamase; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; beta-Casp domain
YP_003807904.1	COGs: COG1032 Fe-S oxidoreductase; InterProIPR006058:IPR006638:IPR007197:IPR018768:IPR 013785; KEGG: pca:Pcar_2585 Fe-S oxidoreductase; PFAM: Protein of unknown function DUF2344; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q3A1D4 Fe-S oxidoreductase; PFAM: Uncharacterized protein conserved in bacteria (DUF2344); radical SAM superfamily
YP_003807905.1	COGs: COG1530 ribonuclease G and E; InterPro IPR019307:IPR016027:IPR012340:IPR004659; KEGG: sfu:Sfum_1609 ribonuclease; PFAM: RNA-binding protein AU-1/ribonuclease E/G; SPTR: A0LIP4 RNAse G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family
YP_003807906.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006089:IPR006092:IPR006091:IPR006090:IPR 009100:IPR009075:IPR013786:IPR013764; KEGG: dat:HRM2_10010 Acd3; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C0QL27 Acd3; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003807907.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dal:Dalk_2344 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: B8FAV1 Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003807908.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dal:Dalk_2343 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: B8FAV0 Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family
YP_003807909.1	InterPro IPR001387:IPR013096:IPR011051:IPR014710; KEGG: drt:Dret_1668 transcriptional regulator, XRE family; PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C8X3F5 Transcriptional regulator, XRE family; PFAM: Cupin domain; Helix-turn-helix
YP_003807910.1	COGs: COG1014 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit gamma; InterPro IPR019752:IPR002869; KEGG: drt:Dret_0089 pyruvate/ketoisovalerate oxidoreductase; PFAM: pyruvate/ketoisovalerate oxidoreductase; SPTR: C0GP42 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase
YP_003807911.1	COGs: COG1013 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit beta; InterPro IPR011766; KEGG: gur:Gura_2238 thiamine pyrophosphate binding domain-containing protein; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; SPTR: A5G3Q3 Thiamine pyrophosphate enzyme domain protein TPP-binding; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_003807912.1	COGs: COG0674 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit alpha; InterPro IPR002880:IPR009014:IPR015941; KEGG: gme:Gmet_1307 2-ketoisovalerate ferredoxin reductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SPTR: Q39W31 pyruvate flavodoxin/ferredoxin oxidoreductase-like; PFAM: domain
YP_003807913.1	InterPro IPR017900:IPR001450:IPR017896; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, subunit delta; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Q317N2 2-oxoglutarate ferredoxin oxidoreductase, subunit delta; PFAM: 4Fe-4S binding domain
YP_003807914.1	COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterProIPR014043:IPR016035:IPR016036:IPR001227:IPR 004410; KEGG: dal:Dalk_3440 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; SPTR: B8FLI2 Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase
YP_003807915.1	COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR011991; KEGG: sfu:Sfum_3768 DtxR family iron dependent repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor; SPTR: A0LPT5 Iron (Metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain
YP_003807916.1	InterPro IPR013216; KEGG: mma:MM_1672 methyltransferase; PFAM: methyltransferase type 11; SPTR: Q8PWB7 methyltransferase; PFAM: methyltransferase domain
YP_003807917.1	InterPro IPR010664; KEGG: pca:Pcar_1941 hypothetical protein; PFAM: protein of unknown function DUF1239; SPTR: Q3A375 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1239)
YP_003807918.1	COGs: COG1934 conserved hypothetical protein; InterPro IPR005653:IPR014340; KEGG: gme:Gmet_1281 OstA-like protein; PFAM: OstA family protein; SPTR: Q39W57 OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA
YP_003807919.1	COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: sat:SYN_00946 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q2LSN4 ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_003807920.1	COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: hoh:Hoch_2755 RNA polymerase, sigma 54 subunit, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; SPTR: D0LNA6 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor
YP_003807921.1	COGs: COG1544 ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: gsu:GSU1886 ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; SPTR: Q74BZ2 ribosomal subunit interface protein; TIGRFAM: ribosomal subunit interface protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein
YP_003807922.1	COGs: COG1762 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178:IPR016152; KEGG: sfu:Sfum_2067  PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: A0LJZ8 Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_003807923.1	COGs: COG1660 P-loop-containing kinase; InterPro IPR005337; KEGG: chy:CHY_0272 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: Q3AFE0 UPF0042 nucleotide-binding protein CHY_0272; PFAM: P-loop ATPase protein family
YP_003807924.1	COGs: COG2893 phosphotransferase system mannose/fructose-specific component IIA; InterPro IPR004701; KEGG: gur:Gura_2967 PTS system fructose subfamily IIA component; PFAM: PTS system fructose subfamily IIA component; SPTR: A5G5S1 PTS system fructose subfamily IIA component; PFAM: PTS system fructose IIA component
YP_003807925.1	COGs: COG0456 acetyltransferase; InterPro IPR000182:IPR016181:IPR006464; KEGG: dvl:Dvul_1409 ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Q72BF8 ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: acetyltransferase (GNAT) family; TIGRFAM: ribosomal-protein-alanine acetyltransferase
YP_003807926.1	COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR015911:IPR001576:IPR015824:IPR015901; KEGG: gme:Gmet_1947 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: phosphoglycerate kinase; SPTR: Q39U98 phosphoglycerate kinase; PFAM: phosphoglycerate kinase
YP_003807927.1	COGs: COG0149 Triosephosphate isomerase; InterPro IPR020861:IPR000652:IPR013785; KEGG: hmo:HM1_1604 triosephosphate isomerase; PFAM: triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Q8GDR3 Triosephosphate isomerase (Fragment); TIGRFAM: triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase
YP_003807928.1	COGs: COG1314 Preprotein translocase subunit SecG; InterPro IPR004692; KEGG: sat:SYN_03791 protein translocase subunit; PFAM: Preprotein translocase SecG subunit; SPTR: Q2LWZ2 Protein translocase subunit; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit
YP_003807929.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347:IPR002198:IPR016040; KEGG: gsu:GSU0802 short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Q1JVF9 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003807930.1	COGs: COG2119 membrane protein; InterPro IPR001727; KEGG: gvi:gsr0120 hypothetical protein; PFAM: protein of unknown function UPF0016; SPTR: Q7NPD5 Gsr0120 protein; PFAM: Uncharacterized protein family UPF0016
YP_003807931.1	COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR002052:IPR000241; KEGG: sfu:Sfum_1764  RNA methylase; PFAM:  RNA methylase; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR: A0LJ49 Putative RNA methylase; PFAM: Putative RNA methylase family UPF0020
YP_003807932.1	COGs: COG0552 Signal recognition particle GTPase; InterPro IPR000897:IPR003593:IPR013822:IPR004390; KEGG: gsu:GSU1132 cell division protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; SPTR: Q74E32 Cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY
YP_003807933.1	COGs: COG1196 Chromosome segregation ATPase; InterPro IPR017871:IPR003395:IPR010935:IPR011890; KEGG: gme:Gmet_1174 condensin subunit Smc; PFAM: SMC domain protein; SPTR: Q39WG2 Condensin subunit Smc; TIGRFAM: chromosome segregation protein SMC; PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type
YP_003807934.1	COGs: COG0415 deoxyribodipyrimidine photolyase; InterPro IPR005101; KEGG: hoh:Hoch_4973 DNA photolyase FAD-binding protein; PFAM: DNA photolyase FAD-binding; PRIAM: deoxyribodipyrimidine photo-lyase; SPTR: D0LU98 DNA photolyase FAD-binding protein; PFAM: FAD binding domain of DNA photolyase; TIGRFAM: photolyase PhrII
YP_003807935.1	COGs: COG3272 conserved hypothetical protein; InterPro IPR007553:IPR013560:IPR017087; KEGG: sat:SYN_02271  cytoplasmic protein; PFAM: Protein of unknown function DUF1722; protein of unknown function DUF523; SPTR: Q2LQU0 Hypothetical cytosolic protein; PFAM: Protein of unknown function (DUF523); Protein of unknown function (DUF1722)
YP_003807936.1	COGs: COG0751 glycyl-tRNA synthetase subunit beta; InterPro IPR002311:IPR008909:IPR006194:IPR015944; KEGG: gsu:GSU0579 glycyl-tRNA synthetase subunit beta; PFAM: glycyl-tRNA synthetase subunit beta; DALR anticodon binding domain protein; PRIAM: glycine--tRNA ligase; SPTR: Q1K046 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, subunit beta; PFAM: glycyl-tRNA synthetase subunit beta; DALR anticodon binding domain; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, subunit beta
YP_003807937.1	COGs: COG0752 glycyl-tRNA synthetase subunit alpha; InterPro IPR002310:IPR006194; KEGG: sat:SYN_01536 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase subunit alpha; PRIAM: glycine--tRNA ligase; SPTR: Q2LVI0 glycyl-tRNA synthetase subunit alpha; TIGRFAM: glycyl-tRNA synthetase, subunit alpha; PFAM: glycyl-tRNA synthetase subunit alpha; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, subunit alpha
YP_003807938.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR004838:IPR001176:IPR004839:IPR015424:IPR 015421; KEGG: rsd:TGRD_536 aspartate aminotransferase; PFAM: aminotransferase class I and II; SPTR: B1H0I7 Aspartate aminotransferase; PFAM: Aminotransferase class I and II
YP_003807939.1	InterPro IPR009875; KEGG: dat:HRM2_37380 hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: C8R280 Type IV pilus assembly PilZ; PFAM: PilZ domain
YP_003807940.1	COGs: COG1635 Flavoprotein involved in thiazole biosynthesis; InterPro IPR003042:IPR002922; KEGG: mth:MTH1620 ribulose-1,5-biphosphate synthetase; PFAM: thiamine biosynthesis Thi4 protein; SPTR: C0GVS7 Thiazole biosynthesis enzyme; TIGRFAM: thiazole biosynthesis enzyme; PFAM: Thi4 family; TIGRFAM: thiazole biosynthesis enzyme
YP_003807941.1	COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR019734:IPR001440:IPR013105:IPR011717:IPR 013026:IPR011990; KEGG: sfu:Sfum_1501 hypothetical protein; PFAM: hypothetical protein; hypothetical protein; Tetratricopeptide TPR_4; SPTR: A0LID8 hypothetical protein; PFAM: Tetratricopeptide repeat
YP_003807942.1	COGs: COG1639 signal transduction protein; InterPro IPR013976; KEGG: dma:DMR_03330 hypothetical protein; PFAM: Metal-dependent hydrolase HDOD; SPTR: C4XH56 Putative uncharacterized protein; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG
YP_003807943.1	COGs: COG2064 Flp pilus assembly protein TadC; InterPro IPR018076; KEGG: rfr:Rfer_0801 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Q220K2 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain
YP_003807944.1	COGs: COG4965 Flp pilus assembly protein TadB; InterPro IPR018076; KEGG: pol:Bpro_2556 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: B7WWM6 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain
YP_003807945.1	COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR017975:IPR001482; KEGG: dde:Dde_2363 type II/IV secretion system protein; PFAM: type II secretion system protein E; SPTR: Q30YT6 Type II/IV secretion system protein; PFAM: Type II/IV secretion system protein
YP_003807946.1	COGs: COG4963 Flp pilus assembly protein ATPase CpaE; KEGG: pol:Bpro_2554 response regulator receiver domain-containing protein; SPTR: Q12AH2 Response regulator receiver domain protein (CheY-like); PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003807947.1	KEGG: dps:DP1532 hypothetical protein; SPTR: Q6AN13 Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2134)
YP_003807948.1	COGs: COG4964 Flp pilus assembly protein secretin CpaC; InterPro IPR001775:IPR007055:IPR004846; KEGG: dvl:Dvul_1112 type II and III secretion system protein; PFAM: type II and III secretion system protein; transport-associated; SPTR: Q72A78 Type II/III secretion system protein; PFAM: Putative phospholipid-binding domain; Bacterial type II and III secretion system protein
YP_003807949.1	COGs: COG3745 Flp pilus assembly protein CpaB; InterPro IPR013974:IPR017592; KEGG: ctt:CtCNB1_2104 pilus assembly transmembrane protein; PFAM: SAF domain protein; SPTR: B7WWL6 Flp pilus assembly protein CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB
YP_003807950.1	InterPro IPR012495; KEGG: bph:Bphy_5858 TadE family protein; PFAM: TadE family protein; SPTR: B2JVE5 TadE family protein; PFAM: TadE-like protein
YP_003807951.1	InterPro IPR000045; KEGG: aca:ACP_1104 type IV prepilin leader peptidase family protein; PFAM: peptidase A24A prepilin type IV; SPTR: C1F476 Type IV prepilin leader peptidase family protein; PFAM: Type IV leader peptidase family
YP_003807952.1	KEGG: ade:Adeh_2831 Flp/Fap pilin component; SPTR: Q2ILS4 Flp/Fap pilin component; PFAM: Flp/Fap pilin component
YP_003807953.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR002078:IPR020441:IPR001789:IPR003593:IPR 002197:IPR011006:IPR009057; KEGG: sfu:Sfum_3765 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: A0LPT2 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003807954.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR018247:IPR004358:IPR001789:IPR000014:IPR 001610:IPR003661:IPR003594:IPR013656:IPR013655:IPR011006:I PR009082:IPR005467:IPR000700; KEGG: sfu:Sfum_2943 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; PAC repeat-containing protein; SPTR: A0LMG5 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003807955.1	COGs: COG3322 periplasmic ligand-binding sensor domain; InterProIPR004358:IPR003660:IPR003594:IPR007892:IPR 005467; KEGG: dba:Dbac_3141 diguanylate cyclase; PFAM: CHASE4 domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SPTR: C5S8H6 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; CHASE4 domain
YP_003807956.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: ppd:Ppro_1137 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: A1AN41 Uncharacterized domain 1; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003807957.1	COGs: COG0148 Enolase; InterPro IPR020809:IPR000941:IPR020811:IPR020810; KEGG: drm:Dred_2987 phosphopyruvate hydratase; PFAM: Enolase-like; PRIAM: phosphopyruvate hydratase; SPTR: A4J8T7 Enolase; TIGRFAM: enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase
YP_003807958.1	COGs: COG1944 conserved hypothetical protein; InterProIPR019734:IPR003776:IPR001440:IPR013105:IPR 013026:IPR011990; KEGG: dol:Dole_1241 hypothetical protein; PFAM: protein of unknown function DUF181; hypothetical protein; hypothetical protein; SPTR: A8ZY40 Putative uncharacterized protein; PFAM: YcaO-like family; Tetratricopeptide repeat; TIGRFAM: uncharacterized domain; bacteriocin biosynthesis docking scaffold, SagD family
YP_003807959.1	COGs: COG2920 Dissimilatory sulfite reductase (desulfoviridin) subunit gamma; InterPro IPR007453; KEGG: drt:Dret_1739 sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; PRIAM: Hydrogensulfite reductase; SPTR: C0GTM7 Sulfur relay protein, TusE/DsrC/DsvC family; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC like protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family
YP_003807960.1	COGs: COG0525 Valyl-tRNA synthetase; InterProIPR001412:IPR019754:IPR002300:IPR013155:IPR 019499:IPR009080:IPR009008:IPR010978:IPR014729:IPR011321:I PR002303; KEGG: gsu:GSU2045 valyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; SPTR: Q74BJ6 Valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase
YP_003807961.1	KEGG: dvu:DVU3172 hypothetical protein; SPTR: Q725K1 Putative uncharacterized protein
YP_003807962.1	COGs: COG0648 endonuclease IV; InterPro IPR018246:IPR001719:IPR012307:IPR013022; KEGG: aca:ACP_1118 deoxyribonuclease IV (phage-T(4)-induced); PFAM: xylose isomerase domain protein TIM barrel; PRIAM: Deoxyribonuclease IV (phage-T(4)-induced); SMART: AP endonuclease family 2; SPTR: C1F489 Deoxyribonuclease IV (Phage-T(4)-induced); TIGRFAM: apurinic endonuclease Apn1; PFAM: xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1)
YP_003807963.1	InterPro IPR000428:IPR006121; KEGG: dal:Dalk_3004 heavy metal transport/detoxification protein; PFAM: heavy metal transport/detoxification protein; SPTR: B8FL59 heavy metal transport/detoxification protein; PFAM: heavy-metal-associated domain
YP_003807964.1	COGs: COG2217 Cation transport ATPase; InterProIPR018303:IPR001757:IPR001877:IPR001756:IPR 006121:IPR008250:IPR005834:IPR006122:IPR006403:IPR006416; KEGG: dal:Dalk_3003 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; heavy metal transport/detoxification protein; haloacid dehalogenase; SPTR: B8FL58 heavy metal translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_003807965.1	COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); InterPro IPR003594; KEGG: mem:Memar_2469  anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: D1JH80 Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003807966.1	COGs: COG2013 conserved hypothetical protein; InterPro IPR002838:IPR016031; KEGG: amr:AM1_1071 hypothetical protein; PFAM: protein of unknown function DUF124; SPTR: B0C1U4 Putative uncharacterized protein; PFAM: Protein of unknown function DUF124; TIGRFAM: conserved hypothetical protein TIGR00266
YP_003807967.1	KEGG: geo:Geob_1673 protein of unknown function DUF559; SPTR: B9M650 Putative uncharacterized protein
YP_003807968.1	COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: pol:Bpro_3150 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: C9PD86 DedA family protein; PFAM: SNARE associated Golgi protein
YP_003807969.1	KEGG: sus:Acid_5380 hypothetical protein; SPTR: Q01VI6 Putative uncharacterized protein; PFAM: Disulphide bond corrector protein DsbC
YP_003807970.1	InterPro IPR015424; KEGG: ttj:TTHA0934 glutamate-1-semialdehyde 2,1-aminomutase (GSA) (glutamate-1-semialdehyde aminotransferase) (GSA-AT); SPTR: Q5SJS4 glutamate-1-semialdehyde 2,1-aminomutase; PFAM: Aminotransferase class-III
YP_003807971.1	InterPro IPR005186; KEGG: nis:NIS_0641 flagellar protein FlaG; PFAM: flagellar protein FlaG protein; SPTR: Q9ZFD5 FlaG (Fragment); PFAM: FlaG protein
YP_003807972.1	COGs: COG2206 HD-GYP domain; InterProIPR001789:IPR003018:IPR003607:IPR006674:IPR 011006; KEGG: sfu:Sfum_3292 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: response regulator receiver; GAF domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; GAF domain protein; metal-dependent phosphohydrolase HD region; SPTR: A0LNG3 Response regulator receiver modulated metal dependent phosphohydrolase; PFAM: HD domain; Response regulator receiver domain; TIGRFAM: uncharacterized domain HDIG
YP_003807973.1	InterPro IPR009875; KEGG: dba:Dbac_0482 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: C0GRU4 Type IV pilus assembly PilZ; PFAM: PilZ domain
YP_003807974.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594:IPR005467; KEGG: tye:THEYE_A0747 sensor histidine kinase, PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: B5YK24 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003807975.1	COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155:IPR016024:IPR011989; KEGG: dds:Ddes_1378 heat domain containing protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; SPTR: B8J0K3 HEAT domain containing protein; PFAM: PBS lyase HEAT-like repeat; HEAT repeat
YP_003807976.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789:IPR011006; KEGG: lip:LI1142 CheY-like receiver; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q1MP81 CheY-like receiver; PFAM: Response regulator receiver domain
YP_003807977.1	COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; InterProIPR001789:IPR019734:IPR013105:IPR001440:IPR 011006:IPR013026:IPR011990; KEGG: dal:Dalk_2142 response regulator receiver protein; PFAM: response regulator receiver; hypothetical protein; hypothetical protein; SMART: response regulator receiver; Tetratricopeptide repeat; SPTR: C8QWV9 Response regulator receiver protein; PFAM: Response regulator receiver domain; Tetratricopeptide repeat
YP_003807978.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481:IPR007167:IPR008988; KEGG: dal:Dalk_1640 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; FeoA family protein; SPTR: B8FAP2 Ferric uptake regulator, Fur family; PFAM: FeoA domain; Ferric uptake regulator family
YP_003807979.1	COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterProIPR019546:IPR001450:IPR017909:IPR017896:IPR 006311; KEGG: dal:Dalk_1084 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8F941 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: TAT (twin-arginine translocation) pathway signal sequence; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_003807980.1	KEGG: dal:Dalk_1085 iron-sulfur cluster-binding protein; SPTR: B8F942 Iron-sulfur cluster-binding protein
YP_003807981.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR017900:IPR004017:IPR009051:IPR012285; KEGG: dae:Dtox_1734 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: C8VX15 Putative uncharacterized protein; PFAM: Cysteine-rich domain
YP_003807982.1	KEGG: Gm6927; predicted gene 6927; SPTR: C2C2T9 CDF family cation diffusion facilitator CzrB
YP_003807983.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR013785; KEGG: sfu:Sfum_1744 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: A0LJ29 radical SAM domain protein; PFAM: radical SAM superfamily
YP_003807984.1	InterPro IPR002781; KEGG: dat:HRM2_08600 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: C0QKA2 Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_003807985.1	COGs: COG3786 conserved hypothetical protein; InterPro IPR005490; KEGG: rce:RC1_2938 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: B6IVI2 Putative uncharacterized protein; PFAM: L,D-transpeptidase catalytic domain
YP_003807986.1	COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR001412:IPR002306:IPR002305:IPR014729; KEGG: pca:Pcar_0588 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Q3A704 Tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase
YP_003807987.1	COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155:IPR013785; KEGG: gur:Gura_4410 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase; SPTR: C8R0Q8 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase / NADH oxidase family
YP_003807988.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR017871:IPR003593:IPR003439; KEGG: gsu:GSU0913 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: Q74EP9 ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_003807989.1	COGs: COG1715 restriction endonuclease; InterPro IPR007560; KEGG: ava:Ava_B0091 restriction endonuclease; PFAM: restriction endonuclease; SPTR: Q3M2I3 restriction endonuclease; PFAM: restriction endonuclease
YP_003807990.1	COGs: COG3049 Penicillin V acylase and related amidase; InterPro IPR003199; KEGG: sun:SUN_1118 choloylglycine hydrolase; PFAM: choloylglycine hydrolase; PRIAM: choloylglycine hydrolase; SPTR: A6Q9B4 choloylglycine hydrolase; PFAM: Linear amide C-N hydrolases, choloylglycine hydrolase family
YP_003807991.1	COGs: COG0422 Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: geo:Geob_0543 thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; SPTR: B9LZU6 Thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC
YP_003807992.1	COGs: COG0515 serine/threonine protein kinase; InterProIPR002290:IPR017442:IPR013229:IPR011009:IPR 019734:IPR000719:IPR013026; KEGG: rca:Rcas_0525 TPR repeat-containing serine/threonin protein kinase; PFAM: serine/threonine-protein kinase-like domain; PEGA domain protein; SMART: serine/threonine protein kinase; SPTR: A6C267 serine/threonine protein kinase; PFAM: Protein kinase domain; PEGA domain
YP_003807993.1	COGs: COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; InterPro IPR005546:IPR006315; KEGG: dol:Dole_2458 outer membrane autotransporter; PFAM: Autotransporter beta- domain protein; SPTR: A8ZW28 Outer membrane autotransporter barrel domain; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain
YP_003807994.1	InterPro IPR000064; KEGG: sfu:Sfum_0991 NLP/P60 protein; PFAM: NLP/P60 protein; SPTR: A0LGY4 NLP/P60 protein; PFAM: NlpC/P60 family
YP_003807995.1	COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: dat:HRM2_24110 Isf; PFAM: NADPH-dependent FMN reductase; SPTR: C0QFT7 Isf; PFAM: NADPH-dependent FMN reductase
YP_003807997.1	COGs: COG2840 conserved hypothetical protein; InterPro IPR002625; KEGG: dma:DMR_30700 hypothetical protein; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; SPTR: C4XII6 Putative uncharacterized protein; PFAM: Smr domain
YP_003807998.1	KEGG: sfu:Sfum_4098 hypothetical protein; SPTR: A0LQR1 Putative uncharacterized protein
YP_003807999.1	InterPro IPR007419; KEGG: tai:Taci_1540 BFD domain protein (2Fe-2S)-binding domain protein; PFAM: BFD domain protein [2Fe-2S]-binding domain protein; SPTR: D1B6X0 BFD domain protein (2Fe-2S)-binding domain protein; PFAM: BFD-like [2Fe-2S] binding domain
YP_003808000.1	COGs: COG3640 CO dehydrogenase maturation factor; InterPro IPR002586:IPR014433; KEGG: sfu:Sfum_4099 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: A0LQR2 Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003808001.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: gur:Gura_2340 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: A5G401 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2
YP_003808002.1	InterPro IPR001647:IPR009057:IPR012287; KEGG: pag:PLES_03641  transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Q9I6C7 Probable transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003808003.1	COGs: COG2015 Alkyl sulfatase and related hydrolase; InterPro IPR016083; KEGG: dal:Dalk_0128 beta-lactamase domain protein; SPTR: B8FKM3 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; SCP-2 sterol transfer family
YP_003808004.1	COGs: COG1430 conserved hypothetical protein; InterPro IPR003795; KEGG: rce:RC1_1079 hypothetical protein; PFAM: protein of unknown function DUF192; SPTR: B4VP74 Uncharacterized ACR, COG1430, PFAM: Uncharacterized ACR, COG1430
YP_003808005.1	COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011711:IPR011991; KEGG: dvm:DvMF_1479 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: B8DLQ1 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_003808006.1	InterPro IPR016024:IPR011989; KEGG: dal:Dalk_2376 hypothetical protein; SPTR: Q1NTE0 HEAT
YP_003808007.1	COGs: COG0426 flavoprotein; InterPro IPR008254:IPR016440; KEGG: sfu:Sfum_3253 flavodoxin/nitric oxide synthase; PFAM: flavodoxin/nitric oxide synthase; SPTR: C8R2S6 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; Flavodoxin
YP_003808008.1	COGs: COG1773 rubredoxin; InterPro IPR018527:IPR001052:IPR004039; KEGG: dvl:Dvul_0203 rubredoxin-type Fe(Cys)4 protein; PFAM: rubredoxin-type Fe(Cys)4 protein; SPTR: Q46496 rubredoxin; PFAM: rubredoxin
YP_003808009.1	COGs: COG2033 Desulfoferrodoxin; InterPro IPR004462:IPR002742:IPR004793; KEGG: dma:DMR_17610 desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; SPTR: Q46495 Desulfoferrodoxin; TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin, N-terminal domain; Desulfoferrodoxin; TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain; desulfoferrodoxin; desulfoferrodoxin ferrous iron-binding domain
YP_003808010.1	COGs: COG1592 Rubrerythrin; InterProIPR003251:IPR009078:IPR004039:IPR009040:IPR 012347; KEGG: dol:Dole_2647 rubrerythrin; PFAM: Rubrerythrin; SPTR: A8ZX71 Rubrerythrin; PFAM: Rubrerythrin
YP_003808011.1	KEGG: csc:Csac_0688 hypothetical protein; SPTR: C8S5Y8 Putative uncharacterized protein
YP_003808012.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: drt:Dret_0141 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: C8R2S3 Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family
YP_003808013.1	COGs: COG0603 PP-loop superfamily ATPase; InterPro IPR018317:IPR004479:IPR014729; KEGG: dal:Dalk_4152 ExsB protein; PFAM: Queuosine synthesis-like; SPTR: C5SBZ9 ExsB protein; TIGRFAM: exsB protein; PFAM: ExsB; TIGRFAM: exsB protein
YP_003808014.1	KEGG: azc:AZC_0448 hypothetical protein; SPTR: A6C2E0 Putative uncharacterized protein
YP_003808015.1	COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: pay:PAU_03719 high-affinity branched-chain amino acid transport atp-binding protein LivF; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C7BLV1 High-affinity branched-chain amino acid transport atp-binding protein livf; PFAM: ABC transporter
YP_003808016.1	COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: pcl:Pcal_0845 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B7A702 ABC transporter related; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter
YP_003808017.1	COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: sti:Sthe_1537 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: D1C405 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003808018.1	COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR000408:IPR001851; KEGG: hwa:HQ3183A ABC-type branched-chain amino acid transport system, permease protein I; PFAM: inner-membrane translocator; SPTR: Q18FH5 ABC-type branched-chain amino acid transport system, permease protein I; PFAM: Branched-chain amino acid transport system / permease component
YP_003808019.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tye:THEYE_A0768 leu/ile/val-binding protein; PFAM: extracellular ligand-binding receptor; SPTR: Q649G6 Putative uncharacterized protein; PFAM: Receptor family ligand binding region
YP_003808020.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dal:Dalk_3701 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: B8FLN5 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region
YP_003808021.1	COGs: COG0443 Molecular chaperone; InterPro IPR018181:IPR001023:IPR013126:IPR012725; KEGG: sat:SYN_01983 chaperone protein; PFAM: Heat shock protein 70; SPTR: Q2LUH6 Chaperone protein dnaK; TIGRFAM: chaperone protein DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK
YP_003808022.1	COGs: COG0576 Molecular chaperone GrpE (heat shock protein); InterPro IPR000740:IPR009012:IPR013805; KEGG: mta:Moth_0584 GrpE protein; PFAM: GrpE protein; SPTR: B9XMT2 Protein grpE; PFAM: GrpE
YP_003808023.1	COGs: COG1420 Transcriptional regulator of heat shock gene; InterPro IPR002571:IPR011991; KEGG: gur:Gura_0209 heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; SPTR: A5GDC6 Heat-inducible transcription repressor HrcA; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: HrcA protein C terminal domain; TIGRFAM: heat shock gene repressor HrcA
YP_003808024.1	KEGG: ade:Adeh_3450 WD-40 repeat-containing serine/threonin protein kinase; SPTR: Q2IF56 serine/threonine protein kinase with WD40 repeats
YP_003808025.1	COGs: COG5561 metal-binding protein; InterPro IPR014925; KEGG: dol:Dole_0580 hypothetical protein; PFAM: Protein of unknown function CGGC region; SPTR: A8ZU78 Putative uncharacterized protein; PFAM: CGGC domain
YP_003808026.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR013785; KEGG: dal:Dalk_0090 radical SAM domain protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: B8FKI5 radical SAM domain protein; PFAM: radical SAM superfamily
YP_003808027.1	KEGG: dsa:Desal_1340 hypothetical protein; SPTR: C6C206 Putative uncharacterized protein; manually curated
YP_003808028.1	COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504:IPR012677; KEGG: dma:DMR_11610 RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; SPTR: C4XLR4 RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
YP_003808029.1	InterPro IPR017518:IPR017517; KEGG: dal:Dalk_2661 wyosine base formation; SPTR: B8FIW2 Wyosine base formation; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain; TIGRFAM: conserved hypothetical protein TIGR03084; uncharacterized Actinobacterial protein TIGR03083
YP_003808030.1	KEGG: vex:VEA_002959 oligopeptide ABC transporter periplasmic oligopeptide-binding protein OppA; SPTR: Q87MY5 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
YP_003808031.1	KEGG: hypothetical protein; SPTR: A8IP46 Predicted protein
YP_003808032.1	COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: rpt:Rpal_2846 membrane bound O-acyl transferase MBOAT family protein; PFAM: membrane bound O-acyl transferase MBOAT family protein; SPTR: Q6N6N7 Putative alginate o-acetyltransferase AlgI; PFAM: MBOAT family
YP_003808033.1	KEGG: rpd:RPD_0465 alginate O-acetyltransferase AlgJ; SPTR: Q13DY6 Putative AlgJ protein, required for O-acetylation of alginate in Pseudomonas aeruginosa
YP_003808034.1	COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537:IPR004441; KEGG: afw:Anae109_2230 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: A7HCI6 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3
YP_003808035.1	COGs: COG0194 Guanylate kinase; InterProIPR020590:IPR008145:IPR008144:IPR001357:IPR 017665; KEGG: hha:Hhal_0976 guanylate kinase; PFAM: guanylate kinase; PRIAM: Guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; SPTR: A1WVP0 Guanylate kinase; TIGRFAM: guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase
YP_003808036.1	COGs: COG2052 conserved hypothetical protein; InterPro IPR007169; KEGG: dma:DMR_32850 hypothetical protein; PFAM: protein of unknown function DUF370; SPTR: C4XJM9 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF370)
YP_003808037.1	COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR013527:IPR013551:IPR005229; KEGG: gem:GM21_1049 YicC domain protein; PFAM: domain of unknown function DUF1732; YicC domain protein; SPTR: C6E2G4 YicC domain protein; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: conserved hypothetical protein TIGR00255
YP_003808038.1	KEGG: dol:Dole_1913 GTP-binding protein; SPTR: A8ZSI0 Conserved hypothetical GTP-binding protein
YP_003808039.1	COGs: COG1004 UDP-glucose 6-dehydrogenase; InterProIPR001732:IPR014026:IPR014027:IPR016040:IPR 008927:IPR013328:IPR017476; KEGG: tye:THEYE_A0998 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: B5YKR5 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_003808040.1	InterPro IPR018271:IPR007016; KEGG: tye:THEYE_A0427 O-antigen polymerase family; PFAM: O-antigen polymerase; SPTR: B5YJ59 O-Antigen polymerase family; PFAM: O-Antigen ligase
YP_003808041.1	COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611:IPR011913; KEGG: sfu:Sfum_3634 ribokinase-like domain-containing protein; PFAM: PfkB domain protein; SPTR: A0LPF2 PfkB domain protein; TIGRFAM: rfaE bifunctional protein; PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I
YP_003808042.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: tye:THEYE_A0426 glycosyl transferase, family 9; PFAM: glycosyl transferase family 9; SPTR: B5YJ58 glycosyl transferase, family 9; PFAM: glycosyltransferase family 9 (heptosyltransferase)
YP_003808043.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: rrs:RoseRS_0847 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: A5URK7 glycosyl transferase, group 1; PFAM: glycosyl transferases group 1
YP_003808044.1	COGs: COG0438 glycosyltransferase; InterPro IPR018062:IPR001296; KEGG: acr:Acry_1805 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: A5FZH6 glycosyl transferase, group 1; PFAM: glycosyl transferases group 1
YP_003808045.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: dar:Daro_0157 glycosyl transferase family protein; PFAM: glycosyl transferase family 9; SPTR: Q47JR5 glycosyl transferase, family 9; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II
YP_003808046.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: dar:Daro_0153 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: B9YYN8 glycosyl transferase group 1; PFAM: glycosyl transferases group 1
YP_003808047.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201:IPR011916; KEGG: sfu:Sfum_0370 lipopolysaccharide heptosyltransferase III, PFAM: glycosyl transferase family 9; SPTR: B9YYN7 Lipopolysaccharide heptosyltransferase III; TIGRFAM: lipopolysaccharide heptosyltransferase III; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase III
YP_003808048.1	InterPro IPR005651; KEGG: dol:Dole_1914 hypothetical protein; PFAM: protein of unknown function DUF343; SPTR: A8ZSI1 Putative uncharacterized protein
YP_003808049.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201:IPR011908; KEGG: tye:THEYE_A0945 lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; SPTR: A1HRG7 Lipopolysaccharide heptosyltransferase II; TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase II
YP_003808050.1	COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR005834:IPR006543:IPR006549; KEGG: ppd:Ppro_2549 HAD superfamily hydrolase; PFAM: haloacid dehalogenase; SPTR: A1AS33 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase family domain
YP_003808051.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201:IPR011910; KEGG: gsu:GSU2256 ADP-heptose--LPS heptosyltransferase II, PFAM: glycosyl transferase family 9; SPTR: Q74AU4 ADP-heptose--LPS heptosyltransferase II, TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II
YP_003808052.1	COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: sfu:Sfum_0376 lipid A biosynthesis acyltransferase; PFAM: lipid A biosynthesis acyltransferase; SPTR: A0LF74 Lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase
YP_003808053.1	COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; InterPro IPR003758; KEGG: sfu:Sfum_0346 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: A0LF44 Tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase
YP_003808054.1	COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: dal:Dalk_0350 three-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; SPTR: B8F927 3-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YP_003808055.1	InterPro IPR002509:IPR011330; KEGG: gme:Gmet_0882 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Q39XA0 polysaccharide deacetylase; PFAM: polysaccharide deacetylase
YP_003808056.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: gme:Gmet_0885 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q39X97 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2
YP_003808057.1	COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: gme:Gmet_0887 glycosyl transferase family protein; PFAM: glycosyl transferase family 39; SPTR: Q39X95 glycosyl transferase, family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase
YP_003808058.1	COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: tgr:Tgr7_3093 glycosyl transferase family 39; PFAM: glycosyl transferase family 39; SPTR: B8GQ15 glycosyl transferase family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase
YP_003808059.1	InterPro IPR000326:IPR016118; KEGG: tye:THEYE_A1814 lipid A 1-phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: B5K7V0 PAP2 superfamily protein; PFAM: PAP2 superfamily
YP_003808060.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871:IPR003593:IPR001140:IPR003439:IPR 011527:IPR017940:IPR011917; KEGG: sat:SYN_01564 phospholipid-lipopolysaccharide ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: Q2LVL0 Lipid A export ATP-binding/permease protein msbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter; ABC transporter transmembrane region; TIGRFAM: lipid A export permease/ATP-binding protein MsbA
YP_003808061.1	COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: sat:SYN_01565 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Q2LVL8 Lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; manually curated; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase
YP_003808062.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104:IPR016040; KEGG: aeh:Mlg_0316 oxidoreductase domain-containing protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Q0ABW6 Oxidoreductase domain protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_003808063.1	COGs: COG3494 conserved hypothetical protein; InterPro IPR010415; KEGG: dat:HRM2_22450 hypothetical protein; PFAM: protein of unknown function DUF1009; SPTR: C0QEK1 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1009)
YP_003808064.1	COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451:IPR011004:IPR010137; KEGG: dol:Dole_2840 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR: A8ZY16 Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
YP_003808065.1	COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR013114:IPR010084; KEGG: aca:ACP_2637 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; SPTR: C1F2H7 beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabZ; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ
YP_003808066.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterProIPR018357:IPR020573:IPR001451:IPR011004:IPR 007691; KEGG: gsu:GSU2266 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; SPTR: Q74AT5 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_003808067.1	InterPro IPR005632; KEGG: drt:Dret_2230 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: C8X517 Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like)
YP_003808068.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184:IPR016474; KEGG: dal:Dalk_1787 outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: B8FFS9 Outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein
YP_003808069.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439:IPR015854; KEGG: gem:GM21_3422 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C6E5C2 ABC transporter; PFAM: ABC transporter
YP_003808070.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838:IPR011925; KEGG: sfu:Sfum_3743 LolC/E family lipoprotein releasing system, transmembrane protein; PFAM: protein of unknown function DUF214; SPTR: A0LPR1 Lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family
YP_003808071.1	COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR018149:IPR004365:IPR004364:IPR016027:IPR 006195:IPR012340:IPR002313; KEGG: drt:Dret_2234 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: C8X521 Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial
YP_003808072.1	KEGG: sfu:Sfum_0116 hypothetical protein; SPTR: Q2LR31 Hypothetical cytosolic protein
YP_003808073.1	COGs: COG2048 Heterodisulfide reductase subunit B; InterPro IPR004017; KEGG: dal:Dalk_5067 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; PRIAM: CoB--CoM heterodisulfide reductase; SPTR: B8FDV7 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich domain
YP_003808074.1	COGs: COG1150 Heterodisulfide reductase subunit C; InterProIPR009051:IPR012285:IPR017896:IPR017900:IPR 006655; KEGG: dal:Dalk_5066 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDV6 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Nitrate reductase subunit gamma
YP_003808075.1	COGs: COG2006 conserved hypothetical protein; InterPro IPR007160:IPR006311; KEGG: dvm:DvMF_2714 protein of unknown function DUF362; PFAM: protein of unknown function DUF362; SPTR: B8DIZ2 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF362)
YP_003808076.1	COGs: COG0348 polyferredoxin; InterPro IPR017896:IPR017900:IPR001450; KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C0GLH2 4Fe-4S ferredoxin iron-sulfur binding domain protein; TIGRFAM: MauM/NapG family ferredoxin-type protein
YP_003808077.1	KEGG: GI18852 gene product from transcript GI18852-RA ; K13174 THO complex subunit 5; SPTR: D0GTE2 ATP-dependent helicase HrpB
YP_003808078.1	COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterPro IPR009010:IPR006656:IPR006657; KEGG: sfu:Sfum_0031 molybdopterin oxidoreductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; SPTR: A0LE82 Molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain
YP_003808079.1	COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterProIPR001041:IPR017896:IPR017900:IPR006655:IPR 000283:IPR019574:IPR001450:IPR006963:IPR006656; KEGG: dat:HRM2_16870 FdhA5; PFAM: molybdopterin oxidoreductase Fe4S4 region; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: C0QAZ5 FdhA5; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Molybdopterin oxidoreductase; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; 4Fe-4S binding domain; Molybdopterin oxidoreductase Fe4S4 domain
YP_003808080.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: mem:Memar_2456 beta-lactamase domain-containing protein; SPTR: A3CYC7 beta-lactamase domain protein; manually curated; PFAM: Metallo-beta-lactamase superfamily
YP_003808081.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR020845:IPR000873:IPR011904; KEGG: sfu:Sfum_0745 acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A0LG91 Acetyl-coenzyme A synthetase; TIGRFAM: acetate/CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase
YP_003808082.1	InterPro IPR016196:IPR011701; KEGG: gsu:GSU2490 oxalate/formate antiporter, PFAM: major facilitator superfamily MFS_1; SPTR: Q74AA0 Oxalate/formate antiporter, PFAM: Major Facilitator Superfamily
YP_003808083.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR011006:IPR009057:IPR002078:IPR001789:IPR 003593:IPR002197; KEGG: dat:HRM2_01260 sigma-54 dependent DNA-binding response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: C0QED2 Sigma-54 dependent DNA-binding response regulator; PFAM: Response regulator receiver domain; Sigma-54 interaction domain
YP_003808084.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR003594:IPR009082:IPR004358:IPR005467:IPR 000014:IPR000700:IPR003661:IPR013163:IPR013656:IPR013767; KEGG: dat:HRM2_07890 two domain sensory box histidine kinase (methyl-accepting chemotaxis transducer/Ntr-family protein); PFAM: Cache type 2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: C0QJP9 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Cache domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808085.1	InterPro IPR003615:IPR002711; KEGG: psa:PST_1581 restriction endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: Q1NP98 HNH endonuclease; PFAM: HNH endonuclease
YP_003808086.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: pvi:Cvib_0884 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; SPTR: A4SEJ0 Alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold
YP_003808087.1	KEGG: gur:Gura_3066 cache type 2 domain-containing protein; SPTR: A5G619 Cache, type 2 domain protein
YP_003808088.1	InterPro IPR000361; KEGG: dal:Dalk_4032 hypothetical protein; PFAM: HesB/YadR/YfhF-family protein; SPTR: B8FLY4 Putative uncharacterized protein; PFAM: Iron-sulphur cluster biosynthesis
YP_003808089.1	COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: ote:Oter_3365 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: C0AB92 Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase
YP_003808090.1	COGs: COG1908 Coenzyme F420-reducing hydrogenase subunit delta; InterPro IPR003813; KEGG: sfu:Sfum_2154 methyl-viologen-reducing hydrogenase, subunit delta; PFAM: methyl-viologen-reducing hydrogenase subunit delta; SPTR: A0LK84 methyl-viologen-reducing hydrogenase, subunit delta; PFAM: methyl-viologen-reducing hydrogenase, subunit delta
YP_003808091.1	COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterProIPR016040:IPR017896:IPR017900:IPR001450:IPR 006076; KEGG: dal:Dalk_0247 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: FAD dependent oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FMT9 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain; FAD dependent oxidoreductase
YP_003808092.1	COGs: COG1908 Coenzyme F420-reducing hydrogenase subunit delta; InterPro IPR003813; KEGG: dal:Dalk_3063 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase subunit delta; SPTR: B8FBK0 methyl-viologen-reducing hydrogenase subunit delta; PFAM: methyl-viologen-reducing hydrogenase, subunit delta
YP_003808093.1	InterPro IPR009051:IPR017896:IPR017900; KEGG: dal:Dalk_5062 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDV2 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Coenzyme F420 hydrogenase/dehydrogenase, subunit beta C terminus
YP_003808094.1	InterPro IPR009051:IPR017896:IPR017900; KEGG: sfu:Sfum_1971 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: A0LJQ3 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_003808095.1	COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterProIPR017938:IPR001834:IPR017927:IPR012165:IPR 008333:IPR001433:IPR019480; KEGG: sfu:Sfum_1970 oxidoreductase FAD/NAD(P)-binding subunit; PFAM: dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; SPTR: A0LJQ2 Oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain
YP_003808096.1	COGs: COG0247 Fe-S oxidoreductase; InterProIPR009051:IPR012285:IPR017896:IPR017900:IPR 017969:IPR004017; KEGG: sfu:Sfum_2146 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A0LK76 Putative uncharacterized protein; PFAM: Cysteine-rich domain
YP_003808097.1	COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: dau:Daud_1208 magnesium chelatase; PRIAM: Magnesium chelatase; SPTR: B1I3V1 Magnesium chelatase
YP_003808098.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296:IPR001173; KEGG: kpu:KP1_0662 hypothetical protein; PFAM: glycosyl transferase family 2; glycosyl transferase group 1; SPTR: C4X2L8 Putative uncharacterized protein; manually curated; PFAM: glycosyl transferases group 1; glycosyl transferase family 2
YP_003808099.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR008089:IPR002198:IPR001509; KEGG: sfu:Sfum_2190 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C0GQ58 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_003808100.1	COGs: COG0281 Malic enzyme; InterProIPR016040:IPR015884:IPR012188:IPR012301:IPR 012302:IPR002505; KEGG: glo:Glov_1262 malic enzyme; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; SPTR: B3E7A4 Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))., phosphate acetyltransferase; PFAM: Malic enzyme, NAD binding domain; phosphate acetyl/butaryl transferase; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase
YP_003808101.1	KEGG: cdl:CDR20291_3456 hypothetical protein; SPTR: C6LFD7 Hypothetical Cytosolic Protein
YP_003808102.1	KEGG: sfu:Sfum_1719 hypothetical protein; SPTR: Q1NV86 Putative uncharacterized protein
YP_003808103.1	COGs: COG0777 Acetyl-CoA carboxylase subunit beta; InterPro IPR000438:IPR011762:IPR011763:IPR000022; KEGG: gsu:GSU2370 acetyl-CoA carboxylase, carboxyl transferase, subunit beta; PFAM: carboxyl transferase; SPTR: Q74AI4 Acetyl-CoA carboxylase, carboxyl transferase, subunit beta; PFAM: carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit beta
YP_003808104.1	InterPro IPR009875; KEGG: sth:STH863 hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: Q67R45 Putative uncharacterized protein; PFAM: PilZ domain
YP_003808105.1	COGs: COG1893 Ketopantoate reductase; InterProIPR008927:IPR016040:IPR013328:IPR013332:IPR 013752:IPR003710; KEGG: scl:sce8654 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; PRIAM: 2-dehydropantoate 2-reductase; SPTR: A9G056 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase
YP_003808106.1	InterPro IPR016032:IPR000792:IPR011991; KEGG: sfu:Sfum_0947 two component LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: A0LGU1 Two component transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family
YP_003808107.1	InterPro IPR009875; KEGG: sfu:Sfum_3881 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: A0LQ48 Type IV pilus assembly PilZ; PFAM: PilZ domain
YP_003808108.1	COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171; KEGG: dal:Dalk_3267 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; SPTR: B8FJ30 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase
YP_003808109.1	COGs: COG1148 Heterodisulfide reductase subunit A and related polyferredoxins; InterProIPR013027:IPR000103:IPR016040:IPR017896:IPR 017900:IPR003953:IPR001450:IPR006076; KEGG: sfu:Sfum_3133 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LN04 4Fe-4S ferredoxin, iron-sulfur binding domain protein; PFAM: FAD binding domain; 4Fe-4S binding domain; FAD dependent oxidoreductase
YP_003808110.1	COGs: COG1908 Coenzyme F420-reducing hydrogenase subunit delta; InterPro IPR003813; KEGG: mta:Moth_1193 methyl-viologen-reducing hydrogenase, subunit delta; PFAM: methyl-viologen-reducing hydrogenase subunit delta; SPTR: Q2RJ82 methyl-viologen-reducing hydrogenase, subunit delta; PFAM: methyl-viologen-reducing hydrogenase, subunit delta
YP_003808111.1	KEGG: dal:Dalk_3264 hypothetical protein; SPTR: B8FJ27 Putative uncharacterized protein; PFAM: methylene-tetrahydrofolate reductase C terminal
YP_003808112.1	COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171; KEGG: dal:Dalk_2779 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; SPTR: B8FKU9 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase
YP_003808113.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR001789; KEGG: dal:Dalk_3262 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FJ25 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003808114.1	KEGG: ach:Achl_0449 alpha/beta hydrolase fold-3 domain protein; SPTR: B8HAI7 Alpha/beta hydrolase fold-3 domain protein
YP_003808115.1	KEGG: mex:Mext_1994 beta-lactamase domain-containing protein; SPTR: A9W487 beta-lactamase domain protein
YP_003808116.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR003594:IPR009082:IPR004358:IPR005467:IPR 000014:IPR000700:IPR001610:IPR003661:IPR013656:IPR013767; KEGG: sfu:Sfum_2807 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: A0LM33 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808117.1	COGs: COG5002 Signal transduction histidine kinase; InterProIPR003594:IPR011006:IPR009082:IPR004358:IPR 005467:IPR001789:IPR000014:IPR003661:IPR013656; KEGG: dal:Dalk_2419 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; histidine kinase A domain protein; SPTR: B8FB26 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; septum site-determining protein MinC
YP_003808118.1	COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: sus:Acid_0656 transketolase domain-containing protein; PFAM: transketolase; SPTR: Q02BA9 transketolase; PFAM: Transketolase, thiamine diphosphate binding domain
YP_003808119.1	COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR009014:IPR005475; KEGG: sus:Acid_0657 transketolase, central region; PFAM: transketolase; SPTR: Q02BA8 Transketolase, central region; manually curated; PFAM: Transketolase, pyrimidine binding domain
YP_003808120.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sus:Acid_0658 NAD-dependent epimerase/dehydratase; PFAM: glycosyl transferase family 2; SPTR: Q02BA7 NAD-dependent epimerase/dehydratase; manually curated; PFAM: glycosyl transferase family 2
YP_003808121.1	InterPro IPR013217; KEGG: sus:Acid_0659 methyltransferase type 11; PFAM: methyltransferase type 12; SPTR: Q02BA6 methyltransferase type 11; PFAM: methyltransferase domain
YP_003808122.1	COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013216; KEGG: ppd:Ppro_0039 ArsR family transcriptional regulator; PFAM: methyltransferase type 11; SPTR: B0VEV0 Putative 3-demethylubiquinone-9 3-O-methyltransferase; PFAM: methyltransferase domain
YP_003808123.1	InterPro IPR013217; KEGG: dma:DMR_45250 hypothetical protein; PFAM: methyltransferase type 12; SPTR: C4XRV0 Putative uncharacterized protein; PFAM: methyltransferase domain
YP_003808124.1	KEGG: nmu:Nmul_A0293 hypothetical protein; SPTR: Q2YCC0 Putative uncharacterized protein
YP_003808125.1	KEGG: rru:Rru_B0007 glycosyl transferase, group 1; SPTR: Q2RMP2 glycosyl transferase, group 1
YP_003808126.1	KEGG: sse:Ssed_3004 hypothetical protein; SPTR: B7S3F5 Putative uncharacterized protein
YP_003808127.1	InterPro IPR013217; KEGG: cts:Ctha_1954 RNA methyltransferase, TrmA family; PFAM: methyltransferase type 12; SPTR: A0Y156 Membrane-associated protein
YP_003808128.1	KEGG: nar:Saro_0601 sulfotransferase; SPTR: Q2GAS5 Sulfotransferase; PFAM: Sulfotransferase domain
YP_003808129.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015424:IPR015421:IPR015422:IPR000653; KEGG: gme:Gmet_2332 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Q39T67 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_003808130.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015424:IPR015421:IPR015422:IPR000653; KEGG: gme:Gmet_2332 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Q39T67 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_003808131.1	InterPro IPR014985; KEGG: psb:Psyr_1578 hypothetical protein; PFAM: WbqC-like family protein; SPTR: Q4ZW46 Putative uncharacterized protein; PFAM: WbqC-like protein family
YP_003808132.1	COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871; KEGG: pth:PTH_0581 NifU-like protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: A5D4Q3 NifU homolog; PFAM: NifU-like N terminal domain
YP_003808133.1	COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900:IPR002586:IPR001450; KEGG: sfu:Sfum_3408 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LNS9 Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003808134.1	COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900:IPR002586:IPR001450; KEGG: sfu:Sfum_3409 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LNT0 Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; 4Fe-4S binding domain
YP_003808135.1	COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: dds:Ddes_1867 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SPTR: Q5DUA6 Putative uncharacterized protein orp (Fragment); PFAM: Dinitrogenase iron-molybdenum cofactor
YP_003808136.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR000808:IPR019591; KEGG: sfu:Sfum_3613 ParA family protein; PFAM: ATPase-like, ParA/MinD; SPTR: A0LPD1 ParA family protein; PFAM: ParA/MinD ATPase like; Anion-transporting ATPase
YP_003808137.1	COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterProIPR009057:IPR020441:IPR002078:IPR000014:IPR 000700:IPR001610:IPR003593:IPR013656:IPR002197; KEGG: sfu:Sfum_3592 sigma-54 dependent trancsriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; SMART: ATPase AAA; PAS domain containing protein; PAC repeat-containing protein; SPTR: A0LPB0 Sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808138.1	InterProIPR009057:IPR011075:IPR001647:IPR012287:IPR 015292; KEGG: mca:MCA1598 TetR family transcriptional regulator; PFAM: regulatory protein TetR; Transcriptional regulator TetR; SPTR: Q607Z9 Transcriptional regulator, TetR family; PFAM: Domain of unknown function (DUF1956); Bacterial regulatory proteins, tetR family
YP_003808139.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131; KEGG: dal:Dalk_1443 RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; SPTR: B8FA47 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_003808140.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dal:Dalk_1444 efflux transporter, RND family, MFP subunit; SPTR: B8FA48 Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003808141.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR000209; KEGG: dal:Dalk_1445 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: B8FA49 Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family
YP_003808142.1	COGs: COG0465 ATP-dependent Zn protease; InterProIPR003960:IPR003593:IPR011546:IPR003959:IPR 000642:IPR005936; KEGG: dma:DMR_31250 cell division protein FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; PRIAM: Microtubule-severing ATPase; SMART: ATPase AAA; SPTR: C4XIP8 Cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: FtsH extracellular; peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH
YP_003808143.1	COGs: COG1379 conserved hypothetical protein; InterPro IPR014016:IPR014017:IPR000212; KEGG: rmr:Rmar_0317 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: D0MDM9 UvrD/REP helicase; PFAM: UvrD/REP helicase; TIGRFAM: conserved hypothetical protein TIGR00375
YP_003808145.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR011006:IPR009057:IPR020441:IPR002078:IPR 001789:IPR003593:IPR002197; KEGG: adg:Adeg_0173 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: C6PBI3 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003808146.1	COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: ctc:CTC02074 rod shape-determining protein MreB; PFAM: cell shape determining protein MreB/Mrl; SPTR: Q892M2 Rod shape-determining protein mreB; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family
YP_003808147.1	COGs: COG1067 ATP-dependent protease; InterPro IPR020568:IPR001984; KEGG: adg:Adeg_0177 peptidase S16 lon domain protein; SPTR: C9RAS2 peptidase S16 lon domain protein; PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related  ATP-dependent protease
YP_003808148.1	InterPro IPR011006:IPR001789; KEGG: ank:AnaeK_3251 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: response regulator receiver; SPTR: B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain
YP_003808149.1	KEGG: nfa:nfa12370  indolepyruvate ferredoxin oxidoreductase subunit alpha
YP_003808150.1	COGs: COG1048 Aconitase A; InterProIPR001030:IPR015928:IPR015931:IPR015932:IPR 000573:IPR006250; KEGG: glo:Glov_1612 aconitate hydratase; PFAM: aconitate hydratase domain protein; SPTR: Q1NKB5 Putative aconitate hydratase; TIGRFAM: aconitate hydratase; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, , Aquifex type
YP_003808151.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR011990:IPR001173; KEGG: ade:Adeh_1337 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q2IQM7 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2
YP_003808152.1	COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR013785:IPR005244:IPR007197:IPR020050; KEGG: dol:Dole_1271 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SPTR: A8ZY70 radical SAM domain protein; PFAM: radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily
YP_003808153.1	COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR013785:IPR005244:IPR007197:IPR020050; KEGG: sfu:Sfum_3088 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SPTR: A0LMV9 radical SAM domain protein; PFAM: radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily
YP_003808154.1	COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: dma:DMR_02310 amidohydrolase family protein; PFAM: amidohydrolase; SPTR: C4XGE2 Amidohydrolase family protein; PFAM: Amidohydrolase family
YP_003808155.1	KEGG: afw:Anae109_1228 hypothetical protein; SPTR: B5RV92 Putative cobalamin biosynthesis cobd transmembrane protein
YP_003808156.1	COGs: COG1249 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR016156:IPR013027:IPR000815:IPR004099:IPR 012999:IPR006258; KEGG: dsa:Desal_3027 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: C6C0Y2 Dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase
YP_003808157.1	KEGG: dal:Dalk_4372 beta-lactamase domain protein; SPTR: B8FN82 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003808158.1	COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR016156:IPR001763:IPR013027:IPR004099; KEGG: dps:DP0550 NADH oxidase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: rhodanese domain protein; SPTR: Q6AQU4 Related to NADH oxidase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; rhodanese-like domain
YP_003808159.1	COGs: COG0084 Mg-dependent DNase; InterPro IPR018228:IPR012278:IPR001130:IPR015991; KEGG: pca:Pcar_1695 Mg-dependent DNase; PFAM: TatD-related deoxyribonuclease; SPTR: Q3A3W9 Mg-dependent DNase; TIGRFAM: hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family
YP_003808160.1	COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; InterPro IPR003697; KEGG: maq:Maqu_2725 maf protein; PFAM: Maf family protein; SPTR: A1U481 Maf protein; TIGRFAM: maf protein; PFAM: Maf-like protein; TIGRFAM: MAF protein
YP_003808161.1	COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078:IPR001608; KEGG: geo:Geob_1564 alanine racemase domain protein; PFAM: alanine racemase domain protein; SPTR: B9M5U1 Alanine racemase domain protein; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family
YP_003808162.1	InterPro IPR013216; KEGG: azc:AZC_1518 hypothetical protein; PFAM: methyltransferase type 11; SPTR: A8HXM4 Putative uncharacterized protein; PFAM: methyltransferase domain
YP_003808163.1	KEGG: deb:DehaBAV1_0492 hypothetical protein; SPTR: A5FRU6 Putative uncharacterized protein; PFAM: Cobalamin-independent synthase, Catalytic domain
YP_003808164.1	COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); InterProIPR016027:IPR008991:IPR014722:IPR012340:IPR 013852:IPR020599:IPR013185:IPR001059:IPR015365:IPR011768; KEGG: afw:Anae109_0693 translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW domain protein; Elongation factor P/YeiP protein; SPTR: Q08Z05 Elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P
YP_003808165.1	InterPro IPR011990:IPR013026:IPR019734; KEGG: cvi:CV_0900 hypothetical protein; SPTR: Q7NZM2 Putative uncharacterized protein
YP_003808166.1	InterPro IPR007060; KEGG: mxa:MXAN_3704 cell division protein FtsB; PFAM: septum formation initiator; SPTR: Q08NE1 septum formation initiator subfamily; PFAM: septum formation initiator
YP_003808167.1	COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR003042:IPR006076:IPR011777; KEGG: mta:Moth_0808 geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; SPTR: Q2RKB3 Geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; TIGRFAM: geranylgeranyl reductase family
YP_003808168.1	COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterPro IPR007197; KEGG: sfu:Sfum_1766 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SPTR: A0LJ51 radical SAM domain protein; PFAM: radical SAM superfamily
YP_003808169.1	KEGG: hypothetical protein; SPTR: A5E6K1 Putative uncharacterized protein
YP_003808170.1	KEGG: MEGF6; multiple EGF-like-domains 6
YP_003808171.1	COGs: COG0546 phosphatase; InterPro IPR005833:IPR005834:IPR006439; KEGG: dal:Dalk_3700 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; SPTR: B8FLN4 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_003808172.1	KEGG: dal:Dalk_1271 hypothetical protein; SPTR: B8F9M8 Putative uncharacterized protein
YP_003808173.1	COGs: COG5557 polysulphide reductase; InterPro IPR005614; KEGG: drt:Dret_0273 molybdopterin oxidoreductase, transmembrane subunit, PFAM: polysulphide reductase NrfD; SPTR: C8WZV0 Molybdopterin oxidoreductase, transmembrane subunit; PFAM: polysulphide reductase, NrfD
YP_003808174.1	COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017896:IPR017900:IPR001450; KEGG: dol:Dole_2548 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A8ZWM1 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003808175.1	COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR009010:IPR000169:IPR006656:IPR006657; KEGG: dal:Dalk_1268 molybdopterin oxidoreductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; SPTR: B8F9M5 Molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain
YP_003808176.1	InterPro IPR011031; KEGG: dol:Dole_2546 hypothetical protein; SPTR: A8ZWL9 Putative uncharacterized protein; PFAM: class III cytochrome C family
YP_003808177.1	COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR015797:IPR020476:IPR000086:IPR020084; KEGG: aca:ACP_2902 hydrolase, NUDIX family; PFAM: NUDIX hydrolase; SPTR: C1F3W2 Hydrolase, NUDIX family; PFAM: NUDIX domain
YP_003808178.1	KEGG: dal:Dalk_4351 hypothetical protein; SPTR: B8FN61 Putative uncharacterized protein
YP_003808179.1	InterPro IPR011051:IPR013096; KEGG: dal:Dalk_3657 cupin; PFAM: cupin; SPTR: B8FGW5 cupin; PFAM: Cupin domain
YP_003808180.1	KEGG: fre:Franean1_5789 hypothetical protein; SPTR: A8L8L9 Putative uncharacterized protein; PFAM: RNA cap guanine-N2 methyltransferase
YP_003808181.1	KEGG: dal:Dalk_2308 cache, type 2 domain protein; SPTR: B8FIL1 Cache, type 2 domain protein
YP_003808182.1	COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171; KEGG: dol:Dole_0458 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; SPTR: A8ZTK4 methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase
YP_003808183.1	KEGG: dat:HRM2_30870  zinc-finger protein; SPTR: C0QKT0 Putative zinc-finger protein; PFAM: methylene-tetrahydrofolate reductase C terminal
YP_003808184.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR009051:IPR000759:IPR016040:IPR017896:IPR 017900:IPR001450:IPR013027:IPR003953; KEGG: dal:Dalk_3266 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: B8FJ29 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase; FAD binding domain
YP_003808185.1	COGs: COG2759 formyltetrahydrofolate synthetase; InterPro IPR020628:IPR000559; KEGG: dat:HRM2_16700 Fhs; PFAM: formate-tetrahydrofolate ligase FTHFS; PRIAM: formate--tetrahydrofolate ligase; SPTR: C0QAX9 formate--tetrahydrofolate ligase; PFAM: formate--tetrahydrofolate ligase
YP_003808186.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR009051:IPR013027:IPR000103:IPR012285:IPR 017896:IPR017900:IPR007202:IPR001450; KEGG: dal:Dalk_2596 electron transport complex, RnfABCDGE type, B subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; SPTR: B8FIP8 electron transport complex, RnfABCDGE type, B subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Putative Fe-S cluster; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit
YP_003808187.1	COGs: COG1469 conserved hypothetical protein; InterPro IPR003801; KEGG: mgm:Mmc1_1766 GTP cyclohydrolase; PFAM: protein of unknown function DUF198; PRIAM: GTP cyclohydrolase I; SPTR: A0L8I1 GTP cyclohydrolase folE2; PFAM: Uncharacterized ACR, COG1469; TIGRFAM: conserved hypothetical protein TIGR00294
YP_003808188.1	COGs: COG1186 Protein chain release factor B; InterPro IPR000352; KEGG: ank:AnaeK_3493 class I peptide chain release factor; PFAM: class I peptide chain release factor; SPTR: B4UBN2 class I peptide chain release factor; PFAM: RF-1 domain
YP_003808189.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: dal:Dalk_1135 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8F992 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003808190.1	COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900:IPR001450; KEGG: dal:Dalk_0385 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FH06 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain
YP_003808191.1	InterPro IPR002645; KEGG: hmo:HM1_0319 anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Q1NPE5 Sulfate transporter/antisigma-factor antagonist STAS; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_003808192.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR013785:IPR000771; KEGG: gur:Gura_3299 fructose/tagatose bisphosphate aldolase-like protein; PFAM: ketose-bisphosphate aldolase class-II; SPTR: A5G6N8 Fructose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II
YP_003808193.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160:IPR011622:IPR011623; KEGG: saz:Sama_2871 response regulator; PFAM: GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; PRIAM: Diguanylate kinase; SMART: GGDEF domain containing protein; SPTR: A1S9L7 Response regulator containing a CheY-like receiver domain and a GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: 7TM diverse intracellular signalling; GGDEF domain; 7TMR-DISM extracellular 2; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003808194.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR011010:IPR010998:IPR013762:IPR002104; KEGG: adg:Adeg_0419 integrase family protein; PFAM: integrase family protein; SPTR: A8UWI5 Phage integrase; PFAM: Phage integrase family
YP_003808195.1	COGs: COG4695 Phage-related protein; InterPro IPR006944:IPR006427; KEGG: hmo:HM1_2882 phage portal protein, hk97 family; PFAM: portal protein; SPTR: B0N9U4 Putative uncharacterized protein; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family
YP_003808196.1	InterPro IPR006433:IPR006444; KEGG: cth:Cthe_2866 phage major capsid protein, HK97; PFAM: peptidase U35 phage prohead HK97; major capsid protein HK97; SPTR: B4BHH3 Major capsid protein HK97; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Phage capsid family; Caudovirus prohead protease; TIGRFAM: phage major capsid protein, HK97 family; phage prohead protease, HK97 family
YP_003808197.1	COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: pap:PSPA7_5155 phage terminase, large subunit, PFAM: Terminase; SPTR: A6VBQ6 Phage terminase, large subunit, PFAM: Phage Terminase
YP_003808198.1	InterPro IPR003615:IPR002711; KEGG: dvu:DVU1505 holin, PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: C5RJY1 HNH endonuclease; manually curated; PFAM: HNH endonuclease
YP_003808199.1	InterPro IPR015330; KEGG: apt:APA01_26890 DNA recombinase RecA; PFAM: Bifunctional DNA primase/polymerase; SPTR: C6N3S3 Putative truncated Phage / plasmid primase P4; PFAM: Bifunctional DNA primase/polymerase, N-terminal
YP_003808201.1	InterPro IPR009061:IPR010093; KEGG: lin:lin0082 hypothetical protein; SPTR: A8ASM8 Gp39; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family
YP_003808202.1	InterPro IPR009061; KEGG: oca:OCAR_7446 phage transcriptional regulator, AlpA; SPTR: A3ES91 Putative uncharacterized protein
YP_003808203.1	InterPro IPR012337:IPR009057:IPR001584; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain
YP_003808204.1	KEGG: tde:TDE2009 hypothetical protein; SPTR: C1SMG9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329)
YP_003808205.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q311J9 Receptor-mostly Fe transport; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003808206.1	COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731:IPR004869; KEGG: dol:Dole_0610 exporter of the RND superfamily protein-like protein; PFAM: MMPL domain protein; SPTR: B6WQE3 Putative uncharacterized protein; PFAM: MMPL family
YP_003808207.1	KEGG: pgn:PGN_1918 hypothetical protein; SPTR: C1SMH0 Putative uncharacterized protein
YP_003808208.1	KEGG: gdj:Gdia_1815 glycosyl transferase family 2; SPTR: A9HGV1 Putative glycosyl transferase
YP_003808209.1	COGs: COG3551 conserved hypothetical protein; KEGG: swi:Swit_4000 hypothetical protein; SPTR: A8TT37 glycosyl transferase, group 2 family protein; manually curated
YP_003808210.1	COGs: COG4564 Signal transduction histidine kinase; InterPro IPR013163; KEGG: dvl:Dvul_2639 methyl-accepting chemotaxis sensory transducer; PFAM: Cache type 2 domain protein; SPTR: Q72F70 methyl-accepting chemotaxis protein; PFAM: Cache domain
YP_003808211.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594:IPR011006:IPR009082:IPR004358:IPR 005467:IPR001789:IPR000014:IPR000700:IPR001610:IPR003661:I PR013656:IPR013767; KEGG: dol:Dole_3265 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; PAS fold-4 domain protein; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C0GUF6 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808212.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594:IPR011006:IPR009082:IPR004358:IPR 005467:IPR001789:IPR000700:IPR003660:IPR001610:IPR003661:I PR013767:IPR000014; KEGG: dal:Dalk_3402 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAC repeat-containing protein; response regulator receiver; SPTR: B8FLE4 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808213.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004010; KEGG: sat:SYN_00971 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache domain protein; SMART: chemotaxis sensory transducer; SPTR: Q2LSK6 methyl-accepting chemotaxis protein; PFAM: Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003808214.1	KEGG: gsu:GSU1874 hypothetical protein; SPTR: Q74C02 Putative uncharacterized protein
YP_003808215.1	COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000014:IPR000700:IPR001633:IPR000160:IPR 000215:IPR018313:IPR001610:IPR013767:IPR013656; KEGG: mei:Msip34_2729 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; SPTR: C6XBJ6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain
YP_003808216.1	COGs: COG0554 glycerol kinase; InterPro IPR018483:IPR018484:IPR018485:IPR005999; KEGG: drt:Dret_2094 glycerol kinase; PFAM: carbohydrate kinase, FGGY-like; SPTR: C8X4A4 glycerol kinase; TIGRFAM: glycerol kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase
YP_003808217.1	KEGG: mgm:Mmc1_2930 hypothetical protein; SPTR: A0LBS8 Putative uncharacterized protein
YP_003808218.1	InterPro IPR009082:IPR000014:IPR000700:IPR013656; KEGG: dal:Dalk_2075 PAS/PAC sensor hybrid histidine kinase; PFAM: PAS fold-4 domain protein; SPTR: B8FG89 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808219.1	KEGG: similar to epsin 2a; K12471 epsin; SPTR: B7X1T9 Gp37Gp68 family protein
YP_003808220.1	KEGG: hypothetical protein; SPTR: A9SND1 Predicted protein
YP_003808221.1	COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR013785:IPR004136; KEGG: dol:Dole_1182 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase NPD; SPTR: A8ZXN0 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase
YP_003808222.1	COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); InterPro IPR016196:IPR003594:IPR011701; KEGG: bbe:BBR47_11350 hypothetical protein; PFAM: major facilitator superfamily MFS_1; ATP-binding region ATPase domain protein; SPTR: C0Z6F5 Conserved hypothetical membrane protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Major Facilitator Superfamily
YP_003808223.1	InterPro IPR012336:IPR012335:IPR005243; KEGG: dol:Dole_2878 redox-active disulfide protein 2; SPTR: A8ZYF6 Redox-active disulfide protein 2; TIGRFAM: redox-active disulfide protein 2; TIGRFAM: small redox-active disulfide protein 2
YP_003808224.1	InterPro IPR012336:IPR012335; KEGG: sfu:Sfum_3389 hypothetical protein; SPTR: A0LNR0 Putative uncharacterized protein
YP_003808225.1	COGs: COG0701 permease; InterPro IPR005524; KEGG: dat:HRM2_48210  permease; PFAM: permease; SPTR: C0QIC5 Putative permease; PFAM: Predicted permease
YP_003808226.1	InterPro IPR001845:IPR011991; KEGG: ank:AnaeK_4017 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Q1K378 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_003808227.1	COGs: COG0640 transcriptional regulator protein; InterPro IPR001845:IPR011991; KEGG: dal:Dalk_3679 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: B8FLL3 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_003808228.1	COGs: COG0701 permease; InterPro IPR005524; KEGG: dal:Dalk_3678 permease; PFAM: permease; SPTR: B8FLL2 Permease; PFAM: Predicted permease
YP_003808229.1	InterPro IPR001589; KEGG: bcm:Bcenmc03_6922 hypothetical protein; SPTR: C9YBS0 Putative uncharacterized protein
YP_003808230.1	InterPro IPR011051; KEGG: tye:THEYE_A0935 hypothetical protein; SPTR: B5YKK6 Putative uncharacterized protein; PFAM: Cupin domain
YP_003808231.1	COGs: COG1416 conserved hypothetical protein; InterPro IPR014865; KEGG: pis:Pisl_0130 hypothetical protein; PFAM: Domain of unknown function DUF1791; SPTR: A1RQT1 Putative uncharacterized protein; PFAM: DsrE/DsrF-like family
YP_003808232.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: tye:THEYE_A1314 AstB/ChuR-related protein; PFAM: radical SAM domain protein; SPTR: B5YFS6 AstB/chuR-related protein; PFAM: radical SAM superfamily
YP_003808233.1	KEGG: tye:THEYE_A1819 hypothetical protein; SPTR: B5YHM4 Putative uncharacterized protein
YP_003808234.1	COGs: COG0681 Signal peptidase I; InterProIPR015927:IPR000223:IPR011056:IPR019756:IPR 019757:IPR019758:IPR019759; KEGG: dvm:DvMF_2718 signal peptidase I; PFAM: peptidase S24/S26A/S26B, conserved region; PRIAM: Signal peptidase I; SPTR: B8DIZ6 Signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type
YP_003808235.1	KEGG: mta:Moth_0100 hypothetical protein; SPTR: Q2RMA0 Putative uncharacterized protein
YP_003808236.1	KEGG: ctc:CTC00227  cell wall-associated hydrolase; SPTR: Q899F4 Putative cell wall-associated hydrolase
YP_003808237.1	COGs: COG3894 Uncharacterized metal-binding protein; InterPro IPR001041:IPR012675; KEGG: dat:HRM2_30730 Fdx8; PFAM: ferredoxin; SPTR: C0QKR6 Fdx8; PFAM: 2Fe-2S iron-sulfur cluster binding domain
YP_003808238.1	COGs: COG1950 membrane protein; InterPro IPR007165; KEGG: pca:Pcar_2963 hypothetical protein; PFAM: membrane protein of unknown function; SPTR: C0GQV8 Putative uncharacterized protein; PFAM: Membrane protein of unknown function
YP_003808239.1	KEGG: sfu:Sfum_1760 hypothetical protein; SPTR: A0LJ45 Putative uncharacterized protein
YP_003808240.1	InterPro IPR013429; KEGG: dal:Dalk_1639 regulatory protein, FmdB family; PFAM: regulatory protein FmdB; SPTR: B8FAP1 Regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM:  regulatory protein, FmdB family
YP_003808241.1	COGs: COG0708 Exonuclease III; InterPro IPR005135:IPR004808:IPR000097; KEGG: sfu:Sfum_2331 exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; SPTR: A0LKR0 Exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth)
YP_003808242.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160:IPR003018; KEGG: amc:MADE_03704 GGDEF domain protein; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; SPTR: A3WMD3 Phytochrome sensor diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003808243.1	KEGG: hypothetical protein; SPTR: B0DI47 Predicted protein
YP_003808244.1	COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR016040:IPR002198:IPR001509:IPR005888; KEGG: rpd:RPD_1571 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Q13AT1 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase
YP_003808245.1	COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR016040:IPR005913; KEGG: rru:Rru_B0049 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: Q9AFG5 Putative dTDP-4-rhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase
YP_003808246.1	COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835:IPR005907; KEGG: dol:Dole_1011 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; SPTR: A8ZWW5 Glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form
YP_003808247.1	COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR011051:IPR014710:IPR000888; KEGG: sat:SYN_00576 dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: Q2LVW0 DTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: WxcM-like, C-terminal
YP_003808248.1	InterPro IPR011990:IPR019734:IPR013026:IPR001440; KEGG: pca:Pcar_0844 hypothetical protein; PFAM: hypothetical protein; SPTR: Q3A6A7 Putative uncharacterized protein
YP_003808249.1	COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR003538:IPR006260; KEGG: pca:Pcar_0845 TonB domain-containing protein; PFAM: Gram-negative tonB protein; SPTR: Q1K023 TonB-like; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_003808250.1	COGs: COG0848 biopolymer transport protein; InterPro IPR003400; KEGG: dal:Dalk_3527 biopolymer transport protein ExbD/TolR; PFAM: biopolymer transport protein ExbD/TolR; SPTR: B8FC10 biopolymer transport protein ExbD/TolR; PFAM: biopolymer transport protein ExbD/TolR
YP_003808251.1	COGs: COG0811 biopolymer transport protein; InterPro IPR002898; KEGG: pca:Pcar_0847 biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q3A6A4 biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family
YP_003808252.1	COGs: COG0811 biopolymer transport protein; InterPro IPR017270:IPR002898; KEGG: pca:Pcar_0848 TolR-like transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q3A6A3 TolR-like transport protein; PFAM: Protein of unknown function (DUF3450); MotA/TolQ/ExbB proton channel family
YP_003808253.1	KEGG: pca:Pcar_0849 hypothetical protein; SPTR: Q3A6A2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3450)
YP_003808254.1	COGs: COG1385 conserved hypothetical protein; InterPro IPR015947:IPR006700; KEGG: pth:PTH_0881 16S ribosomal RNA methyltransferase RsmE; PFAM: protein of unknown function DUF558; SPTR: A5D3Y4 Uncharacterized protein conserved in bacteria; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family
YP_003808255.1	COGs: COG2264 ribosomal protein L11 methylase; InterPro IPR010456:IPR004498; KEGG: gbm:Gbem_0241 ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; SPTR: B5E9X4 ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase
YP_003808256.1	COGs: COG1691 NCAIR mutase (PurE)-related protein; InterPro IPR000031; KEGG: gem:GM21_3730 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; SPTR: C6E6X1 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: AIR carboxylase
YP_003808257.1	COGs: COG1490 D-Tyr-tRNAtyr deacylase; InterPro IPR003732; KEGG: mta:Moth_1679 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: Q2RHV8 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase
YP_003808258.1	KEGG: ank:AnaeK_3685 hypothetical protein; SPTR: B4UD99 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1285)
YP_003808259.1	InterPro IPR003660; KEGG: dal:Dalk_2462 protein serine/threonine phosphatase; PFAM: histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; SPTR: B8FF95 Protein serine/threonine phosphatase; PFAM: HAMP domain
YP_003808260.1	COGs: COG1283 Na+/phosphate symporter; InterPro IPR003841:IPR008170:IPR004633; KEGG: pca:Pcar_2560 Na+/phosphate symporter; PFAM: Na+/Picotransporter; PhoU family protein; SPTR: Q3A1F9 Na+/phosphate symporter; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; PhoU domain; TIGRFAM: Na/Pi-cotransporter
YP_003808261.1	COGs: COG3144 flagellar hook-length control protein; InterPro IPR001635; KEGG: dma:DMR_13730  flagellar hook-length control protein; PFAM: flagellar hook-length control protein; SPTR: C4XMS3 Putative flagellar hook-length control protein; PFAM: flagellar hook-length control protein FliK
YP_003808262.1	COGs: COG1843 flagellar hook capping protein; InterPro IPR005648; KEGG: dma:DMR_13740 flagellar basal-body rod modification protein FlgD; PFAM: flagellar hook capping protein; SPTR: C4XMS4 flagellar basal-body rod modification protein FlgD; PFAM: flagellar hook capping protein
YP_003808263.1	COGs: COG1749 flagellar hook protein FlgE; InterProIPR002371:IPR019776:IPR001444:IPR011491:IPR 010930:IPR020013; KEGG: dal:Dalk_1015 protein of unknown function DUF1078 domain protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal body FlaE domain protein; SPTR: C8QYQ3 Putative uncharacterized protein; TIGRFAM: fagellar hook-basal body protein; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: fagellar hook-basal body proteins
YP_003808264.1	COGs: COG1291 flagellar motor component; InterPro IPR002898; KEGG: dsa:Desal_3811 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q1JZT0 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family
YP_003808265.1	COGs: COG1360 flagellar motor protein; InterPro IPR006665; KEGG: nmu:Nmul_A1315 flagellar motor protein MotD; PFAM: OmpA/MotB domain protein; SPTR: Q2Y9F3 OmpA/MotB; PFAM: OmpA family
YP_003808266.1	COGs: COG1360 flagellar motor protein; InterPro IPR006665; KEGG: tai:Taci_1325 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: D1B6B5 OmpA/MotB domain protein; PFAM: OmpA family
YP_003808267.1	COGs: COG1580 flagellar basal body-associated protein; InterPro IPR005503; KEGG: dba:Dbac_2735 flagellar basal body-associated protein FliL; PFAM: flagellar basal body-associated protein FliL; SPTR: C7LTP5 flagellar basal body-associated protein FliL; PFAM: flagellar basal body-associated protein FliL
YP_003808268.1	COGs: COG1868 flagellar motor switch protein; InterPro IPR001543:IPR001689; KEGG: dma:DMR_22580 flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; SPTR: C4XSQ7 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: Surface presentation of antigens (SPOA); flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM
YP_003808269.1	COGs: COG1886 flagellar motor switch/type III secretory pathway protein; InterPro IPR001543:IPR001172:IPR012826; KEGG: dat:HRM2_37180 FliN; PFAM: surface presentation of antigens (SPOA) protein; SPTR: C0QAJ3 FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN
YP_003808270.1	COGs: COG3190 flagellar biogenesis protein; InterPro IPR007442; KEGG: lhk:LHK_02352 probable flagellar protein FliO; PFAM: flagellar biosynthesis protein FliO; SPTR: C1DAZ5 Probable flagellar protein FliO; TIGRFAM: flagellar biosynthetic protein FliO; PFAM: flagellar biosynthesis protein, FliO; TIGRFAM: flagellar biosynthetic protein FliO
YP_003808271.1	COGs: COG1338 flagellar biosynthesis pathway component FliP; InterPro IPR005838:IPR005837; KEGG: dal:Dalk_1007 flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; SPTR: B8FK35 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP
YP_003808272.1	COGs: COG1987 flagellar biosynthesis pathway component FliQ; InterPro IPR002191:IPR006305; KEGG: dba:Dbac_2730 flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; SPTR: C7LTP0 flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ
YP_003808273.1	COGs: COG1684 flagellar biosynthesis pathway component FliR; InterPro IPR002010:IPR006303; KEGG: dat:HRM2_37140 FliR; PFAM: type III secretion system inner membrane R protein; SPTR: C0QA54 flagellar biosynthetic protein fliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR
YP_003808274.1	COGs: COG1377 flagellar biosynthesis pathway component FlhB; InterPro IPR006135:IPR006136; KEGG: dal:Dalk_1004 flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; SPTR: Q1NP88 flagellar biosynthetic protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flagellar biosynthetic protein FlhB
YP_003808275.1	COGs: COG1298 flagellar biosynthesis pathway component FlhA; InterPro IPR001712:IPR006301; KEGG: dal:Dalk_1003 flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; SPTR: C8QWD3 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: FHIPEP family; TIGRFAM: flagellar biosynthesis protein FlhA
YP_003808276.1	COGs: COG1419 flagellar GTP-binding protein; InterPro IPR003593:IPR000897:IPR020006; KEGG: glo:Glov_3285 GTP-binding signal recognition particle SRP54 G-domain; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: ATPase AAA; SPTR: Q2B7H4 flagellar biosynthesis regulator FlhF; TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF
YP_003808277.1	COGs: COG0455 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: sfu:Sfum_1383 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: Q1NP85 Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_003808278.1	COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterProIPR013325:IPR013324:IPR000943:IPR011991:IPR 007627:IPR007624:IPR007630:IPR014284:IPR012845; KEGG: mgm:Mmc1_3037 FliA/WhiG family RNA polymerase sigma factor; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; SPTR: A0LC35 RNA polymerase, sigma 28 subunit, FliA/WhiG family; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family
YP_003808279.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR001789; KEGG: dvm:DvMF_2010 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8DQ89 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003808280.1	InterPro IPR005503; KEGG: gbm:Gbem_3828 flagellar basal body-associated protein FliL; PFAM: flagellar basal body-associated protein FliL; SPTR: C0GRN7 flagellar basal body-associated protein FliL; PFAM: flagellar basal body-associated protein FliL
YP_003808281.1	KEGG: hmo:HM1_2253 hypothetical protein; SPTR: B0THD4 Putative uncharacterized protein
YP_003808282.1	KEGG: dat:HRM2_37060 hypothetical protein; SPTR: C0QA46 Putative uncharacterized protein
YP_003808283.1	KEGG: dal:Dalk_0996 hypothetical protein; SPTR: Q1NUQ6 Putative uncharacterized protein; PFAM: flagellar hook-length control protein FliK
YP_003808284.1	COGs: COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB; KEGG: dal:Dalk_0995 flagellar biosynthetic protein FlhB; SPTR: B8FK23 flagellar biosynthetic protein FlhB; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flhB C-terminus-related protein
YP_003808285.1	COGs: COG4786 flagellar basal body rod protein; InterProIPR019776:IPR001444:IPR010930:IPR020013:IPR 012836; KEGG: geo:Geob_0627 flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; SPTR: B9M0F5 flagellar basal-body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins
YP_003808286.1	COGs: COG4786 flagellar basal body rod protein; InterProIPR019776:IPR001444:IPR010930:IPR020013:IPR 012834; KEGG: dvm:DvMF_2518 flagellar basal body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: B8DN17 flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria
YP_003808287.1	COGs: COG1261 flagellar basal body P-ring biosynthesis protein; InterPro IPR013974:IPR017585; KEGG: dal:Dalk_0992 flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; SPTR: B8FK20 Flagella basal body P-ring formation protein FlgA; TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; TIGRFAM: flagella basal body P-ring formation protein FlgA
YP_003808288.1	COGs: COG2063 flagellar basal body L-ring protein; InterPro IPR000527; KEGG: dvl:Dvul_2426 flagellar basal body L-ring protein; PFAM: flagellar L-ring protein; SPTR: C5U440 flagellar L-ring protein; PFAM: flagellar L-ring protein
YP_003808289.1	COGs: COG1706 flagellar basal-body P-ring protein; InterPro IPR001782; KEGG: gsu:GSU3047 flagellar basal body P-ring protein; PFAM: flagellar P-ring protein; SPTR: Q1JZR1 flagellar P-ring protein; PFAM: flagellar P-ring protein
YP_003808290.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR011055:IPR019301:IPR016047; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase; PFAM: peptidase M23; flagellar protein FlgJ-like; SPTR: Q8R8M0 Membrane proteins related to metalloendopeptidases; PFAM: Rod binding protein; peptidase family M23
YP_003808291.1	InterPro IPR007809; KEGG: tte:TTE0493 hypothetical protein; PFAM: FlgN family protein; SPTR: C6PBB0 FlgN family protein; PFAM: FlgN protein
YP_003808292.1	COGs: COG1256 flagellar hook-associated protein; InterPro IPR002371:IPR001444:IPR010810:IPR010930; KEGG: dal:Dalk_0987 flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellin hook IN repeat protein; flagellar basal body rod protein; SPTR: B8FK15 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: Flagellin hook IN motif; Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK
YP_003808293.1	KEGG: dsa:Desal_1017 flagellar hook-associated protein 3; SPTR: C6C0E8 flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region
YP_003808294.1	COGs: COG1551 carbon storage regulator (could also regulate swarming and quorum sensing); InterPro IPR003751; KEGG: gur:Gura_4097 carbon storage regulator, CsrA; PFAM: carbon storage regulator; SPTR: C0GV64 carbon storage regulator, CsrA; TIGRFAM: carbon storage regulator; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA)
YP_003808295.1	COGs: COG1699 conserved hypothetical protein; InterPro IPR003775; KEGG: bba:Bd0543  transmembrane protein; PFAM: protein of unknown function DUF180; SPTR: Q6MQD1 flagellar assembly factor fliW; PFAM: FliW protein
YP_003808296.1	InterPro IPR007412; KEGG: cth:Cthe_2246 anti-sigma-28 factor, FlgM; PFAM: Anti-sigma-28 factor FlgM family protein; SPTR: Q2BQU5 Negative regulator of flagellin synthesis FlgM, PFAM: Anti-sigma-28 factor, FlgM
YP_003808297.1	KEGG: dal:Dalk_0625 hypothetical protein; SPTR: B8FJQ2 Putative uncharacterized protein
YP_003808298.1	KEGG: hypothetical protein; SPTR: Q8GFF2 Putative uncharacterized protein
YP_003808299.1	KEGG: dma:DMR_23530 hypothetical protein; SPTR: C4XT02 Putative uncharacterized protein
YP_003808300.1	COGs: COG2604 conserved hypothetical protein; InterPro IPR002826; KEGG: mta:Moth_0762 hypothetical protein; PFAM: protein of unknown function DUF115; SPTR: Q2RKF9 Putative uncharacterized protein; PFAM: Protein of unknown function DUF115
YP_003808301.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR011990:IPR019734:IPR013026:IPR001173; KEGG: amr:AM1_0991 TPR repeat-containing glycosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Q1Q7L5 Similar to glycosyltransferase fused to TPR-repeat domain; PFAM: glycosyl transferase family 2
YP_003808302.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: mag:amb0148 hypothetical protein; PFAM: glycosyl transferase group 1; SPTR: B4D5P9 glycosyl transferase group 1; PFAM: glycosyl transferases group 1
YP_003808303.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: gsu:GSU3025 heptosyltransferase family protein; PFAM: glycosyl transferase family 9; SPTR: Q748H7 Heptosyltransferase family protein; PFAM: glycosyltransferase family 9 (heptosyltransferase)
YP_003808304.1	KEGG: dde:Dde_0564 hypothetical protein; SPTR: Q315N1 Putative uncharacterized protein
YP_003808305.1	COGs: COG4641 conserved hypothetical protein; KEGG: gsu:GSU3024 hypothetical protein; SPTR: Q748H8 Putative uncharacterized protein
YP_003808306.1	KEGG: aoe:Clos_2488 FlgN family protein; SPTR: A8MJN8 FlgN family protein
YP_003808307.1	COGs: COG1516 Flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: dvl:Dvul_2120 flagellar protein FliS; PFAM: flagellar protein FliS; SPTR: Q72DR7 Putative uncharacterized protein; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS
YP_003808308.1	COGs: COG1345 flagellar capping protein; InterPro IPR003481:IPR010810:IPR010809; KEGG: gme:Gmet_0444 flagellar hook-associated protein 2-like; PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; flagellin hook IN repeat protein; SPTR: A6C894 Probable lateral flagellar hook-associated protein 2; PFAM: flagellar hook-associated protein 2 C-terminus; Flagellin hook IN motif
YP_003808309.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR011990:IPR013026:IPR001173:IPR011717; KEGG: sat:SYN_02803 glycosyltransferase; PFAM: glycosyl transferase family 2; Tetratricopeptide TPR_4; SPTR: Q1Q1I3 Putative uncharacterized protein; PFAM: glycosyl transferase family 2
YP_003808310.1	COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492:IPR001029; KEGG: dma:DMR_10270 flagellin; PFAM: flagellin domain protein; SPTR: C4XKX9 Flagellin; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region
YP_003808311.1	COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492:IPR001029; KEGG: dma:DMR_10270 flagellin; PFAM: flagellin domain protein; SPTR: C4XKX9 Flagellin; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region
YP_003808312.1	COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492:IPR001029; KEGG: dma:DMR_12500 flagellin; PFAM: flagellin domain protein; SPTR: C4XME2 Flagellin; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region
YP_003808313.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: slo:Shew_2040 diguanylate cyclase; PFAM: GGDEF domain containing protein; PRIAM: Diguanylate kinase; SMART: GGDEF domain containing protein; SPTR: A3QEK8 Diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003808314.1	COGs: COG1993 conserved hypothetical protein; InterPro IPR011322:IPR015867:IPR003793; KEGG: ttj:TTHA0334 hypothetical protein; PFAM: protein of unknown function DUF190; SPTR: Q72H46 Hypothetical conserved protein; PFAM: Uncharacterized ACR, COG1993
YP_003808315.1	COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; InterPro IPR003691; KEGG: dba:Dbac_2396 CrcB protein; PFAM: Camphor resistance CrcB protein; SPTR: C7LR69 Protein crcB homolog; TIGRFAM: CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein
YP_003808316.1	InterPro IPR017896:IPR017900:IPR001450; KEGG: fno:Fnod_0110 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Q1K0E9 4Fe-4S ferredoxin, iron-sulfur binding
YP_003808317.1	COGs: COG0674 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit alpha; InterPro IPR009014:IPR015941:IPR002880; KEGG: hor:Hore_06780 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin), subunit alpha; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SPTR: B8CVW6 3-methyl-2-oxobutanoate dehydrogenase (Ferredoxin), subunit alpha; PFAM: domain
YP_003808318.1	COGs: COG1013 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit beta; InterPro IPR011766; KEGG: kol:Kole_2159 thiamine pyrophosphate protein domain protein TPP-binding; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; SPTR: C5CIQ3 Thiamine pyrophosphate protein domain protein TPP-binding; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_003808319.1	COGs: COG1014 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit gamma; InterPro IPR002869:IPR019752; KEGG: hor:Hore_06800 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin), subunit gamma; PFAM: pyruvate/ketoisovalerate oxidoreductase; SPTR: B8CVW8 3-methyl-2-oxobutanoate dehydrogenase (Ferredoxin), subunit gamma; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase
YP_003808320.1	COGs: COG4747 ACT domain-containing protein; InterPro IPR002912; KEGG: pth:PTH_2653 ACT domain-containing protein; PFAM: amino acid-binding ACT domain protein; SPTR: A5CYV2 ACT domain-containing protein; PFAM: ACT domain
YP_003808321.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dal:Dalk_3502 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: B8FBY5 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region
YP_003808322.1	SPTR: Q1NYE8 Putative uncharacterized protein
YP_003808323.1	KEGG: pto:PTO0496 isopentenyl pyrophosphate isomerase; SPTR: Q1NYE9 Putative uncharacterized protein
YP_003808324.1	KEGG: tgr:Tgr7_0065 hypothetical protein; SPTR: C0GRH8 Putative uncharacterized protein
YP_003808325.1	InterPro IPR012480; KEGG: app:CAP2UW1_0857 heparinase II/III family protein; PFAM: heparinase II/III family protein; SPTR: C7RNQ9 heparinase II/III family protein; PFAM: heparinase II/III-like protein
YP_003808326.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: ank:AnaeK_0692 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Q2INQ0 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase family
YP_003808327.1	COGs: COG0516 IMP dehydrogenase/GMP reductase; InterProIPR013785:IPR000644:IPR015875:IPR018529:IPR 001093:IPR005990; KEGG: sfu:Sfum_2122 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; PRIAM: IMP dehydrogenase; SMART: CBS domain containing protein; SPTR: A0LK53 Inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase
YP_003808328.1	COGs: COG0519 GMP synthase PP-ATPase domain/subunit; InterProIPR011702:IPR006220:IPR001317:IPR014729:IPR 017926:IPR000991:IPR018318:IPR001674:IPR004739; KEGG: glo:Glov_1901 GMP synthase; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; tRNA methyl transferase-like; SPTR: B3E1W7 GMP synthase, large subunit; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase C terminal domain; Glutamine amidotransferase class-I; Asparagine synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit
YP_003808329.1	COGs: COG0587 DNA polymerase III subunit alpha; InterProIPR016195:IPR003141:IPR004013:IPR011708:IPR 004365:IPR004805; KEGG: pca:Pcar_1222 DNA polymerase III, subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: Q3A586 DNA polymerase III, subunit alpha; TIGRFAM: DNA polymerase III, subunit alpha; PFAM: Bacterial DNA polymerase III subunit alpha; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_003808330.1	COGs: COG2107 periplasmic solute-binding protein; InterPro IPR003794; KEGG: gbm:Gbem_0599 protein of unknown function DUF191; PFAM: protein of unknown function DUF191; SPTR: B5ED41 Putative uncharacterized protein; PFAM: Putative periplasminc binding protein (DUF178)
YP_003808331.1	COGs: COG0775 Nucleoside phosphorylase; InterPro IPR000845:IPR019963; KEGG: gme:Gmet_3381 purine phosphorylase family protein 1; PFAM: purine or other phosphorylase family 1; SPTR: Q39Q81 Purine and other phosphorylases, family 1; TIGRFAM: futalosine nucleosidase; PFAM: phosphorylase superfamily; TIGRFAM: futalosine nucleosidase
YP_003808332.1	InterPro IPR009057:IPR011075:IPR001647:IPR012287; KEGG: sfu:Sfum_3090 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: A0LMW1 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003808333.1	COGs: COG0781 Transcription termination factor; InterPro IPR006027:IPR011605; KEGG: sfu:Sfum_1382 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; SPTR: A0LI21 N utilization substance protein B homolog; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB
YP_003808334.1	COGs: COG0054 riboflavin synthase beta-chain; InterPro IPR002180:IPR001969; KEGG: ckr:CKR_1901 hypothetical protein; PFAM: 67-dimethyl-8-ribityllumazine synthase; SPTR: A1HMW1 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_003808335.1	COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; InterPro IPR017945:IPR016299:IPR000422:IPR000926; KEGG: pca:Pcar_1447  bifunctional enzyme 3,4-dihydroxy-2-butanone 4-phosphate/GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; SPTR: Q1NRI4 GTP cyclohydrolase II; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_003808336.1	InterPro IPR016181:IPR000182; KEGG: dda:Dd703_2189 transcriptional regulator, MarR family with acetyltransferase activity; PFAM: GCN5-related N-acetyltransferase; SPTR: C6C7N4 Transcriptional regulator, MarR family with acetyltransferase activity; PFAM: acetyltransferase (GNAT) family
YP_003808337.1	COGs: COG0307 riboflavin synthase alpha chain; InterPro IPR017938:IPR001783; KEGG: glo:Glov_1750 riboflavin synthase, subunit alpha; PFAM: Lumazine-binding protein; PRIAM: riboflavin synthase; SPTR: B3EB72 riboflavin synthase, subunit alpha; TIGRFAM: riboflavin synthase, subunit alpha; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, subunit alpha
YP_003808338.1	COGs: COG1985 Pyrimidine reductase riboflavin biosynthesis; InterProIPR016193:IPR016192:IPR002125:IPR002734:IPR 004794:IPR011549; KEGG: pca:Pcar_1445 riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: C8QXZ0 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD
YP_003808339.1	COGs: COG1327 transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains; InterPro IPR005144:IPR003796; KEGG: dal:Dalk_3311 ATP-cone domain protein; PFAM: ATP-cone domain protein; SPTR: B8FJ73 Transcriptional repressor nrdR; PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR
YP_003808340.1	COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR016193:IPR016192:IPR016473:IPR002125; KEGG: sfu:Sfum_0680 CMP/dCMP deaminase, zinc-binding; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: A0LG27 CMP/dCMP deaminase, zinc-binding; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_003808341.1	COGs: COG0698 ribose 5-phosphate isomerase RpiB; InterPro IPR003500:IPR000276:IPR004785; KEGG: sfu:Sfum_1376 RpiB/LacA/LacB family sugar-phosphate isomerase; PFAM: ribose/galactose isomerase; SPTR: A0LI15 ribose-5-phosphate isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family
YP_003808342.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterProIPR016039:IPR016038:IPR018201:IPR014030:IPR 014031:IPR017568; KEGG: dal:Dalk_3309 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: beta-ketoacyl synthase; SPTR: A1HN83 beta-ketoacyl synthase; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase, N-terminal domain; beta-ketoacyl synthase, C-terminal domain; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2
YP_003808343.1	InterPro IPR009081:IPR006162:IPR006163:IPR003231; KEGG: aba:Acid345_4505 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: Q1NRH6 Acyl carrier protein (ACP); TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_003808344.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002347:IPR002198:IPR011284; KEGG: dal:Dalk_3307 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: B8FJ69 3-oxoacyl-(Acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase
YP_003808345.1	COGs: COG2025 electron transfer flavoprotein subunit alpha; InterProIPR014729:IPR017896:IPR017900:IPR001450:IPR 014730:IPR014731; KEGG: sfu:Sfum_1373 electron transfer flavoprotein, subunit alpha; PFAM: electron transfer flavoprotein alpha/beta-subunit ; 4Fe-4S ferredoxin iron-sulfur binding domain protein; electron transfer flavoprotein subunit alpha; SPTR: C8QXY2 electron transfer flavoprotein alpha/beta-subunit; PFAM: 4Fe-4S binding domain; electron transfer flavoprotein domain; electron transfer flavoprotein FAD-binding domain
YP_003808346.1	COGs: COG2086 electron transfer flavoprotein subunit beta; InterPro IPR014729:IPR012255:IPR014730; KEGG: sfu:Sfum_1372 electron transfer flavoprotein beta-subunit; PFAM: electron transfer flavoprotein alpha/beta-subunit; SPTR: C8QXY1 electron transfer flavoprotein alpha/beta-subunit; PFAM: electron transfer flavoprotein domain
YP_003808347.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR013786:IPR006091:IPR 013764:IPR006089:IPR006092:IPR006090; KEGG: sfu:Sfum_1371 butyryl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: A0LI10 butyryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003808348.1	COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; InterPro IPR012281:IPR003664; KEGG: gsu:GSU1600  glycerol-3-phosphate acyltransferase PlsX; PFAM: fatty acid synthesis plsX protein; SPTR: Q74CS2 Fatty acid/phospholipid synthesis protein plsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX
YP_003808349.1	COGs: COG0333 ribosomal protein L32; InterPro IPR002677; KEGG: dal:Dalk_3305 ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: B8FJ67 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein family; TIGRFAM: ribosomal protein L32
YP_003808350.1	COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: tye:THEYE_A1480 hypothetical protein; PFAM: protein of unknown function DUF177; SPTR: B5YG79 Putative uncharacterized protein; PFAM: Uncharacterized ACR, COG1399
YP_003808351.1	COGs: COG0782 Transcription elongation factor; InterPro IPR001437:IPR018151:IPR006359; KEGG: dal:Dalk_1239 transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; SPTR: B8F9J6 Transcription elongation factor; TIGRFAM: transcription elongation factor GreA; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA
YP_003808352.1	InterPro IPR016196:IPR011701; KEGG: dal:Dalk_5205 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: B8FE94 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily; TIGRFAM: AmpG-related permease
YP_003808353.1	COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107:IPR010201; KEGG: sfu:Sfum_0184 HflK protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: A0LEN4 HflK protein; TIGRFAM: HflK protein; PFAM: SPFH domain / Band 7 family; TIGRFAM: HflK protein
YP_003808354.1	COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107:IPR010200; KEGG: pca:Pcar_2263 HflC protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Q1JXH5 HflC protein; TIGRFAM: HflC protein; PFAM: SPFH domain / Band 7 family; TIGRFAM: HflC protein
YP_003808355.1	COGs: COG0261 ribosomal protein L21; InterPro IPR018258:IPR001787; KEGG: dal:Dalk_4114 ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: Q1NQ11 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21
YP_003808356.1	COGs: COG0211 ribosomal protein L27; InterPro IPR001684; KEGG: dal:Dalk_4115 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: B8FM67 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal L27 protein; TIGRFAM: ribosomal protein L27
YP_003808357.1	COGs: COG0536 GTPase; InterProIPR006169:IPR006073:IPR006074:IPR014100:IPR 002917; KEGG: chy:CHY_0370 GTPase ObgE; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; SPTR: Q3AF51 GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain
YP_003808358.1	COGs: COG0263 glutamate 5-kinase; InterProIPR001048:IPR015947:IPR001057:IPR002478:IPR 019797:IPR011529:IPR005715; KEGG: dal:Dalk_4117 glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein; SPTR: B8FM69 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase
YP_003808359.1	COGs: COG0014 Gamma-glutamyl phosphate reductase; InterProIPR016161:IPR016162:IPR016163:IPR020593:IPR 012134:IPR015590:IPR000965; KEGG: dol:Dole_0090 gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; PRIAM: glutamate-5-semialdehyde dehydrogenase; SPTR: A8ZRY3 Gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase
YP_003808360.1	COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; InterPro IPR014729:IPR004820:IPR004821:IPR005248; KEGG: dal:Dalk_4127 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: B8FMU1 Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain
YP_003808361.1	COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: sfu:Sfum_3646 iojap-like protein; PFAM: Iojap-related protein; SPTR: A0LPG4 Iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-related protein
YP_003808362.1	COGs: COG0696 phosphoglyceromutase; InterProIPR011258:IPR017850:IPR017849:IPR005995:IPR 006124; KEGG: gsu:GSU3207 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; PRIAM: phosphoglycerate mutase; SPTR: Q747Q8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
YP_003808363.1	COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterProIPR011990:IPR019734:IPR013026:IPR001915:IPR 013105; KEGG: dal:Dalk_2600 peptidase M48 Ste24p; PFAM: peptidase M48 Ste24p; hypothetical protein; SPTR: B8FIQ2 peptidase M48 Ste24p; PFAM: peptidase family M48; Coatomer subunit epsilon
YP_003808364.1	COGs: COG0480 Translation elongation factors (GTPase); InterProIPR009000:IPR020568:IPR009022:IPR000795:IPR 000640:IPR004161:IPR005517:IPR004540:IPR005225; KEGG: sfu:Sfum_1044 translation elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein; SPTR: A0LH36 Translation elongation factor 2 (EF-2/EF-G); TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_003808365.1	COGs: COG2231 Uncharacterized protein related to endonuclease III; InterPro IPR011257:IPR003265; KEGG: glo:Glov_0376 HhH-GPD family protein; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; SPTR: Q1NLA0 Helix-hairpin-helix motif:HhH-GPD; PFAM: HhH-GPD superfamily base excision DNA repair protein
YP_003808366.1	InterPro IPR002482:IPR018392; KEGG: rmr:Rmar_0215 lytic transglycosylase catalytic; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; SPTR: A3HWY5 Putative membrane-bound lytic murein transglycosylase; PFAM: LysM domain
YP_003808367.1	COGs: COG0631 serine/threonine protein phosphatase; InterPro IPR001932:IPR014045; KEGG: scl:sce3096 phosphoprotein phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; SPTR: A9GIE5 phosphoprotein phosphatase; PFAM: Protein phosphatase 2C
YP_003808368.1	COGs: COG4713 membrane protein; InterPro IPR018674; KEGG: cja:CJA_3453 hypothetical protein; PFAM: Protein of unknown function DUF2142, membrane; SPTR: B3PFZ9 Putative membrane protein; PFAM: Predicted membrane protein (DUF2142)
YP_003808369.1	COGs: COG0353 Recombinational DNA repair protein (RecF pathway); InterPro IPR000093:IPR015967:IPR006154:IPR006171; KEGG: csa:Csal_1460 recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; SPTR: Q1QXJ5 Recombination protein recR; TIGRFAM: recombination protein RecR; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR
YP_003808370.1	COGs: COG0718 conserved hypothetical protein; InterPro IPR004401; KEGG: dol:Dole_0541 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: Q1K473 Putative uncharacterized protein; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: conserved hypothetical protein TIGR00103
YP_003808371.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; InterProIPR008921:IPR001270:IPR003593:IPR003959:IPR 012763; KEGG: gme:Gmet_3422 DNA polymerase III, subunits gamma and tau; PFAM: ATPase AAA; SMART: ATPase AAA; SPTR: Q39Q40 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunits gamma and tau
YP_003808372.1	InterPro IPR007730:IPR011990:IPR013026; KEGG: mag:amb0222 TPR repeat-containing SEL1 subfamily protein; PFAM: Sporulation domain protein; SPTR: Q2WAU9 TPR repeat SEL1 subfamily; PFAM: Sporulation related domain
YP_003808373.1	KEGG: tgr:Tgr7_2445 hypothetical protein; SPTR: B8GLG8 Putative uncharacterized protein
YP_003808374.1	COGs: COG0011 conserved hypothetical protein; InterPro IPR002767:IPR016198; KEGG: mta:Moth_2497 hypothetical protein; PFAM: protein of unknown function DUF77; SPTR: Q2RFL0 Putative uncharacterized protein; PFAM: Domain of unknown function DUF77; TIGRFAM: conserved hypothetical protein TIGR00106
YP_003808375.1	COGs: COG4784 Putative Zn-dependent protease; InterPro IPR011990:IPR001915:IPR019734:IPR013026; KEGG: dba:Dbac_3171 peptidase M48 Ste24p; PFAM: peptidase M48 Ste24p; SPTR: C0GPE5 peptidase M48 Ste24p; PFAM: peptidase family M48
YP_003808376.1	COGs: COG3894 Uncharacterized metal-binding protein; KEGG: dol:Dole_1485 iron-sulfur cluster binding protein; SPTR: Q1NV39 Iron-sulfur cluster binding protein
YP_003808377.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR011004:IPR000683:IPR001451; KEGG: cbc:CbuK_0696 NAD-dependent oxidoreductase; PFAM: oxidoreductase domain protein; transferase hexapeptide repeat containing protein; SPTR: B6J6Q3 NAD-dependent oxidoreductase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Bacterial transferase hexapeptide (three repeats)
YP_003808378.1	COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR014729:IPR006153:IPR006016; KEGG: aoe:Clos_2091 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; UspA domain protein; SPTR: A8MIJ5 Sodium/hydrogen exchanger; PFAM: Universal stress protein family; Sodium/hydrogen exchanger family
YP_003808379.1	KEGG: atc:AGR_pTi_24 hypothetical protein; SPTR: Q9R6B6 Tiorf159 protein
YP_003808380.1	COGs: COG1875 ATPase related to phosphate starvation-inducible protein PhoH; InterPro IPR006596:IPR003714; KEGG: dal:Dalk_3397 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; SPTR: B8FLD9 PhoH family protein; PFAM: PhoH-like protein
YP_003808381.1	KEGG: cyh:Cyan8802_2662 hypothetical protein; SPTR: C7QQC9 Putative uncharacterized protein
YP_003808382.1	KEGG: mgm:Mmc1_0764 hypothetical protein; SPTR: A3ISX8 Putative uncharacterized protein
YP_003808383.1	COGs: COG2192 carbamoyl transferase NodU family; InterPro IPR003696; KEGG: cyp:PCC8801_3456 carbamoyltransferase; PFAM: carbamoyltransferase; SPTR: B7K0E0 carbamoyltransferase; PFAM: carbamoyltransferase
YP_003808384.1	COGs: COG1729 conserved hypothetical protein; InterProIPR014162:IPR019734:IPR011990:IPR001440:IPR 013026; KEGG: dol:Dole_2208 Tol-Pal system YbgF; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: A8ZUI0 Tol-Pal system YbgF; TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide repeat; TIGRFAM: tol-pal system protein YbgF
YP_003808385.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR014169:IPR006665:IPR006664; KEGG: dba:Dbac_2593 peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; SPTR: C7LSC2 peptidoglycan-associated lipoprotein; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA family; TIGRFAM: peptidoglycan-associated lipoprotein
YP_003808386.1	InterPro IPR006260; KEGG: dvm:DvMF_2362 protein TolA; SPTR: Q726K6 TonB protein, TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TolA protein; TonB family C-terminal domain
YP_003808387.1	COGs: COG0848 biopolymer transport protein; InterPro IPR003400; KEGG: ppd:Ppro_1238 biopolymer transport protein ExbD/TolR; PFAM: biopolymer transport protein ExbD/TolR; SPTR: A1AND9 biopolymer transport protein ExbD/TolR; PFAM: biopolymer transport protein ExbD/TolR; TIGRFAM: TolR protein
YP_003808388.1	COGs: COG0811 biopolymer transport protein; InterPro IPR014163:IPR002898; KEGG: gur:Gura_0206 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: A5GDC3 MotA/TolQ/ExbB proton channel; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: TolQ protein
YP_003808389.1	COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006402:IPR005834; KEGG: nwi:Nwi_0649 HAD family hydrolase; PFAM: haloacid dehalogenase; SPTR: Q3SUX6 HAD-superfamily hydrolase subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_003808390.1	InterPro IPR002482:IPR008258:IPR018392; KEGG: sfu:Sfum_0750 peptidoglycan-binding LysM; PFAM: Lytic transglycosylase catalytic; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; SPTR: A0LG96 peptidoglycan-binding LysM; PFAM: Transglycosylase SLT domain; LysM domain
YP_003808391.1	COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR006283:IPR016188:IPR010918:IPR000728; KEGG: afw:Anae109_4465 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; PRIAM: Thiamine-phosphate kinase; SPTR: C8R1R1 Thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase
YP_003808392.1	COGs: COG0105 Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: pdi:BDI_1575 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase; PRIAM: Nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase; SPTR: C9LIM6 Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase
YP_003808393.1	COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: dol:Dole_2060 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: A8ZTT1 Periplasmic binding protein; PFAM: Periplasmic binding protein
YP_003808394.1	COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: sfu:Sfum_2740 transport system permease protein; PFAM: transport system permease protein; SPTR: A0LLW6 Transport system permease protein; PFAM: FecCD transport family
YP_003808395.1	COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR017871:IPR003593:IPR003439; KEGG: drt:Dret_0032 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C8WZ59 ABC transporter; PFAM: ABC transporter
YP_003808396.1	COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: pca:Pcar_3093 outer membrane protein; PFAM: outer membrane efflux protein; SPTR: Q39ZX9 Outer membrane protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_003808397.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: pca:Pcar_3094  efflux transporter; PFAM: secretion protein HlyD family protein; SPTR: Q39ZX8 Putative efflux transporter; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003808398.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR001036; KEGG: pca:Pcar_3095 cation/multidrug efflux pump; PFAM: acriflavin resistance protein; SPTR: Q39ZX7 Cation/multidrug efflux pump; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_003808399.1	COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR020556:IPR000120; KEGG: dal:Dalk_0731 amidase; PFAM: amidase; SPTR: B8FK08 amidase; PFAM: amidase
YP_003808400.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dol:Dole_2864 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: A6GQF1 Putative crotonase; PFAM: enoyl-CoA hydratase/isomerase family
YP_003808401.1	COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022:IPR011762:IPR011763; KEGG: sat:SYN_00481 glutaconyl-CoA decarboxylase A subunit; PFAM: carboxyl transferase; SPTR: Q2LUY7 Glutaconyl-CoA decarboxylase A subunit; PFAM: carboxyl transferase domain
YP_003808402.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006089:IPR013786:IPR006091:IPR013764:IPR 009100:IPR009075:IPR006092:IPR006090; KEGG: sat:SYN_00480 acyl-CoA dehydrogenase, short-chain specific; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: C3UVB0 Glutaryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003808403.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR018376:IPR001753; KEGG: rxy:Rxyl_2368 short chain enoyl-CoA hydratase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: Q1ATI2 Short chain enoyl-CoA hydratase; PFAM: enoyl-CoA hydratase/isomerase family
YP_003808404.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155:IPR016038:IPR016039; KEGG: dae:Dtox_1701 acetyl-CoA acetyltransferase; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: C8VWY2 Acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_003808405.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR016040:IPR013328:IPR008927:IPR006176:IPR 006108; KEGG: dal:Dalk_0054 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; SPTR: B8FKE9 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_003808406.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006089:IPR013786:IPR006091:IPR013764:IPR 009100:IPR009075:IPR006092:IPR006090; KEGG: chy:CHY_1744 acyl-CoA dehydrogenase, short-chain specific; PFAM: acyl-CoA dehydrogenase domain protein; PRIAM: butyryl-CoA dehydrogenase; SPTR: Q3ABC0 Acyl-CoA dehydrogenase, short-chain specific; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003808407.1	COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterProIPR000014:IPR002078:IPR003593:IPR009057:IPR 013767:IPR002197:IPR020441; KEGG: dal:Dalk_0053 sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; helix-turn-helix Fis-type; SMART: ATPase AAA; PAS domain containing protein; SPTR: B8FKE8 Sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808408.1	COGs: COG2005 N-terminal domain of molybdenum-binding protein; InterPro IPR011991:IPR000847; KEGG: dol:Dole_0207 ModE family transcriptional regulator; PFAM: regulatory protein LysR; SPTR: A8ZRZ9 Putative transcriptional regulator, ModE family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain
YP_003808409.1	InterPro IPR020053; KEGG: dma:DMR_12920 hypothetical membrane protein; SPTR: C4XMJ2 Hypothetical membrane protein; manually curated
YP_003808410.1	COGs: COG0701 permease; InterPro IPR005524; KEGG: dma:DMR_12930  ABC transporter permease protein; PFAM: permease; SPTR: C4XMJ3 Putative ABC transporter permease protein; PFAM: Predicted permease
YP_003808411.1	COGs: COG1797 Cobyrinic acid a c-diamide synthase; InterPro IPR004484:IPR002586:IPR011698:IPR017929; KEGG: dba:Dbac_1715 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase; SPTR: C7LVY8 Cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase
YP_003808412.1	COGs: COG2082 precorrin isomerase; InterPro IPR003722; KEGG: dba:Dbac_0965 precorrin-8X methylmutase CbiC/CobH; PFAM: precorrin-8X methylmutase CbiC/CobH; PRIAM: precorrin-8X methylmutase; SPTR: C0GRL7 precorrin-8X methylmutase CbiC/CobH; PFAM: precorrin-8X methylmutase
YP_003808413.1	COGs: COG2243 precorrin-2 methylase; InterPro IPR006364:IPR014777:IPR000878:IPR012382; KEGG: sfu:Sfum_2135 precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: A0LK65 precorrin-2 C20-methyltransferase / cobalt-factor II C20-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases; TIGRFAM: precorrin-2 C20-methyltransferase
YP_003808414.1	COGs: COG1903 Cobalamin biosynthesis protein CbiD; InterPro IPR002748; KEGG: dba:Dbac_1716 cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; SPTR: C7LVY9 Cobalamin biosynthesis protein CbiD; TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: CbiD; TIGRFAM: cobalamin biosynthesis protein CbiD
YP_003808415.1	COGs: COG2242 precorrin-6B methylase 2; InterPro IPR012818:IPR014008:IPR000878:IPR006365; KEGG: dvl:Dvul_0558 precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PRIAM: precorrin-6Y C(5,15)-methyltransferase (decarboxylating); SPTR: A1VAW5 precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Conserved hypothetical protein 95; Tetrapyrrole (Corrin/Porphyrin) methylases; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
YP_003808416.1	COGs: COG2875 precorrin-4 methylase; InterProIPR006362:IPR003043:IPR014777:IPR014776:IPR 000878; KEGG: dat:HRM2_02280 CobM; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PRIAM: precorrin-4 C(11)-methyltransferase; SPTR: C0GRK4 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases; TIGRFAM: precorrin-4 C11-methyltransferase
YP_003808417.1	COGs: COG2073 Cobalamin biosynthesis protein CbiG; InterPro IPR002750; KEGG: dma:DMR_02540 cobalamin biosynthesis protein CbiG; PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; SPTR: C4XGG5 Cobalamin biosynthesis protein CbiG; PFAM: Cobalamin biosynthesis central region; Cobalamin synthesis G C-terminus; Cobalamin synthesis G N-terminal
YP_003808418.1	COGs: COG1010 precorrin-3B methylase; InterPro IPR006363:IPR014777:IPR000878; KEGG: gtn:GTNG_1694 precorrin-3 methylase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PRIAM: precorrin-3B C(17)-methyltransferase; SPTR: A4IP04 precorrin-3 methylase; TIGRFAM: precorrin-3B C17-methyltransferase; manually curated; PFAM: Tetrapyrrole (Corrin/Porphyrin) methylases; TIGRFAM: precorrin-3B C17-methyltransferase
YP_003808419.1	COGs: COG4822 Cobalamin biosynthesis protein CbiK Co2+ chelatase; InterPro IPR010388; KEGG: dat:HRM2_07680 CbiK1; PFAM: anaerobic cobalt chelatase; SPTR: Q1NWC1 Anaerobic cobalt chelatase; PFAM: Cobalt chelatase (CbiK)
YP_003808420.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439:IPR015851; KEGG: pth:PTH_1476 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A5D288 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter; TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit
YP_003808421.1	InterPro IPR013525:IPR013526:IPR000412; KEGG: ppd:Ppro_1264 ABC transporter; PFAM: ABC transporter; SPTR: A1ANG5 ABC transporter; PFAM: ABC transporter
YP_003808422.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_4061 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8FM13 TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003808423.1	COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: dal:Dalk_4060 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: cobaltochelatase; SPTR: B8FM12 cobaltochelatase; PFAM: CobN/Magnesium Chelatase; TIGRFAM: cobaltochelatase, CobN subunit
YP_003808424.1	KEGG: ppd:Ppro_1254 cycothcome C assembly protein; SPTR: A1ANF5 cycothcome C assembly protein; PFAM: cytochrome C assembly protein
YP_003808425.1	KEGG: dal:Dalk_4055 hypothetical protein; SPTR: B8FM07 Putative uncharacterized protein; PFAM: ResB-like family
YP_003808426.1	COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: dal:Dalk_4056 ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein; PFAM: periplasmic binding protein; SPTR: B8FM08 ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein; PFAM: Periplasmic binding protein
YP_003808427.1	COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: ppd:Ppro_1257 transport system permease protein; PFAM: transport system permease protein; SPTR: A1ANF8 Transport system permease protein; PFAM: FecCD transport family
YP_003808428.1	COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593:IPR020322:IPR003439; KEGG: ppd:Ppro_1258 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A1ANF9 ABC transporter related; PFAM: ABC transporter
YP_003808429.1	KEGG: ckr:CKR_1001 hypothetical protein; SPTR: B9E0M7 Putative uncharacterized protein
YP_003808430.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: pca:Pcar_2970 TonB-dependent receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q3A0A2 TonB-dependent receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_003808431.1	COGs: COG1785 alkaline phosphatase; InterPro IPR001952:IPR017849:IPR017850; KEGG: mma:MM_0572 alkaline phosphatase; PFAM: alkaline phosphatase; SMART: alkaline phosphatase; SPTR: A1HMQ4 alkaline phosphatase; PFAM: alkaline phosphatase
YP_003808432.1	COGs: COG1101 ABC-type uncharacterized transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: sfu:Sfum_1504 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A0LIE1 ABC transporter related; PFAM: ABC transporter
YP_003808433.1	COGs: COG4120 ABC-type uncharacterized transport system permease component; InterPro IPR001851:IPR007487; KEGG: sfu:Sfum_1505 hypothetical protein; PFAM: protein of unknown function DUF534; inner-membrane translocator; SPTR: A0LIE2 Putative uncharacterized protein; PFAM: ABC transporter substrate binding protein; Branched-chain amino acid transport system / permease component
YP_003808434.1	InterPro IPR003658:IPR002645; KEGG: sfu:Sfum_1506 anti-sigma-factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: A0LIE3 Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_003808435.1	COGs: COG2043 conserved hypothetical protein; InterPro IPR003748; KEGG: dol:Dole_2553 hypothetical protein; PFAM: protein of unknown function DUF169; SPTR: A8ZWM6 Putative uncharacterized protein; PFAM: Uncharacterised ArCR, COG2043
YP_003808436.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871:IPR003593:IPR011527:IPR001140:IPR 003439:IPR017940; KEGG: cbf:CLI_1144 ABC transport ATP-binding/permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: B1Q7H1 ABC transport ATP-binding/permease protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003808437.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003593:IPR011527:IPR001140:IPR003439:IPR 017940; KEGG: bth:BT_0508 ABC transporter ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: Q8AAF7 ABC transporter ATP-binding protein; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003808438.1	COGs: COG0606 ATPase with chaperone activity; InterProIPR004482:IPR003593:IPR020568:IPR000523:IPR 001208; KEGG: dal:Dalk_5279 Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: ATPase AAA; SPTR: C6MTP3 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, subunit ChlI; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: Mg chelatase-related protein
YP_003808439.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018062:IPR018060:IPR009057:IPR000005; KEGG: ana:alr2575 transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Q8YTY8 Transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_003808440.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: abu:Abu_0340 TonB-dependent receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A8ERP1 TonB-dependent receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
YP_003808441.1	COGs: COG2020 Putative protein-S-isoprenylcysteine methyltransferase; InterPro IPR007269; KEGG: mac:MA2698 hypothetical protein; PFAM: Isoprenylcysteine carboxyl methyltransferase; SPTR: Q8TMG0 Putative uncharacterized protein; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family
YP_003808442.1	COGs: COG2367 beta-lactamase class A; InterPro IPR000871:IPR012338:IPR001466:IPR017909; KEGG: bcn:Bcen_3438 beta-lactamase; PFAM: beta-lactamase; PRIAM: beta-lactamase; SPTR: C0LP01 beta-lactamase LUT-5; PFAM: beta-lactamase
YP_003808443.1	InterPro IPR002539; KEGG: dal:Dalk_5057 MaoC domain protein dehydratase; PFAM: MaoC domain protein dehydratase; SPTR: B8FDU7 MaoC domain protein dehydratase; PFAM: MaoC like domain
YP_003808444.1	InterPro IPR012903; KEGG: rlt:Rleg2_4966 hypothetical protein; PFAM: protein of unknown function nitrogen fixation; SPTR: Q05QL5 Possible SAP domain; PFAM: Nitrogen fixation protein of unknown function
YP_003808445.1	KEGG: rhi:NGR_a00960 conserved hypothetical 59.0 kDa protein; SPTR: P55687 Uncharacterized protein y4wI
YP_003808446.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR006158; KEGG: ana:all2023 hypothetical protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q8YVF5 All2023 protein; PFAM: radical SAM superfamily; B12 binding domain
YP_003808447.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR006158:IPR007197; KEGG: rlt:Rleg2_4968 radical SAM domain protein; PFAM: radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: B6A0R0 radical SAM domain protein; PFAM: radical SAM superfamily; B12 binding domain
YP_003808448.1	KEGG: rhi:NGR_a00960 conserved hypothetical 59.0 kDa protein; SPTR: P55687 Uncharacterized protein y4wI
YP_003808449.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: rlt:Rleg2_4968 radical SAM domain protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: B6A0R0 radical SAM domain protein; PFAM: radical SAM superfamily
YP_003808450.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: ana:all2023 hypothetical protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q08PP1 radical SAM; PFAM: radical SAM superfamily
YP_003808451.1	COGs: COG2021 Homoserine acetyltransferase; InterPro IPR006296:IPR000073:IPR008220; KEGG: rca:Rcas_2039 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; PRIAM: Homoserine O-acetyltransferase; SPTR: A7NKV7 Homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase
YP_003808452.1	KEGG: npu:Npun_F3155 hypothetical protein; SPTR: B2IYN0 Putative uncharacterized protein
YP_003808453.1	COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR017871:IPR003593:IPR011527:IPR001140:IPR 003439:IPR017940; KEGG: dae:Dtox_0940 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: C8W366 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003808454.1	COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR017871:IPR003593:IPR011527:IPR005074:IPR 001140:IPR003439:IPR017940; KEGG: dae:Dtox_0939 ABC transporter related; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: C8W365 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter; peptidase C39 family
YP_003808455.1	InterPro IPR003997; KEGG: mno:Mnod_0405 membrane-fusion protein; SPTR: B8IB54 Membrane-fusion protein
YP_003808456.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: plt:Plut_0872 outer membrane protein-like; PFAM: outer membrane efflux protein; SPTR: Q3B4J4 Outer membrane protein-like; PFAM: Outer membrane efflux protein
YP_003808457.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR020845:IPR000873; KEGG: mhu:Mhun_2392 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Q2FT08 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003808458.1	KEGG: sat:SYN_03130 hypothetical protein; SPTR: Q2LR67 Hypothetical membrane protein; PFAM: GPR1/FUN34/yaaH family
YP_003808460.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: mex:Mext_2406 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C7IBZ9 radical SAM domain protein; PFAM: radical SAM superfamily
YP_003808461.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: mpo:Mpop_2365 radical SAM domain protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C7IBZ9 radical SAM domain protein; PFAM: radical SAM superfamily
YP_003808462.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871:IPR003593:IPR011527:IPR001140:IPR 003439:IPR017940; KEGG: nha:Nham_3544 ABC transporter, ATP-binding/permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: ATPase AAA; SPTR: Q0FX25 ABC multidrug efflux transporter, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter
YP_003808463.1	COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: paa:Paes_2284 radical SAM domain protein; PFAM: radical SAM domain protein; SPTR: B3JFX5 Putative uncharacterized protein
YP_003808464.1	COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: pmf:P9303_04221  arylsulfatase regulatory protein; PFAM: radical SAM domain protein; SPTR: B5ILU5 Arylsulfatase regulatory protein; PFAM: radical SAM superfamily
YP_003808465.1	InterPro IPR004232; KEGG: plt:Plut_0881 hypothetical protein; SPTR: Q3B4I6 Putative uncharacterized protein; PFAM: Nitrile hydratase, alpha chain
YP_003808466.1	KEGG: mgm:Mmc1_2198 peptidase M50; SPTR: A0L9Q6 peptidase M50
YP_003808467.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160:IPR011623; KEGG: dal:Dalk_2685 periplasmic/7TM domain sensor diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; PRIAM: Diguanylate kinase; SMART: GGDEF domain containing protein; SPTR: B8FIY6 Periplasmic/7TM domain sensor diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: 7TM diverse intracellular signalling; GGDEF domain; 7TMR-DISM extracellular 2; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003808468.1	COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003672; KEGG: cts:Ctha_2441 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: Magnesium chelatase; SPTR: B3QX80 cobaltochelatase; PFAM: CobN/Magnesium Chelatase
YP_003808469.1	COGs: COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatase; InterPro IPR003006:IPR003672; KEGG: ppd:Ppro_1259 cobaltochelatase; PFAM: CobN/magnesium chelatase; PRIAM: cobaltochelatase; SPTR: A1ANG0 Hydrogenobyrinic acid a,c-diamide cobaltochelatase; PFAM: CobN/Magnesium Chelatase; TIGRFAM: cobaltochelatase, CobN subunit
YP_003808470.1	COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR000385:IPR007197; KEGG: ppd:Ppro_1270 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SPTR: A1ANH1 radical SAM domain protein; PFAM: radical SAM superfamily
YP_003808471.1	COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR003593:IPR000523; KEGG: cli:Clim_1021 magnesium chelatase; PFAM: magnesium chelatase ChlI subunit; PRIAM: Magnesium chelatase; SMART: ATPase AAA; SPTR: B3EC21 Magnesium chelatase; PFAM: Magnesium chelatase, subunit ChlI
YP_003808472.1	COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR002035:IPR000523; KEGG: ppd:Ppro_1261 magnesium chelatase; PFAM: von Willebrand factor type A; magnesium chelatase ChlI subunit; PRIAM: Magnesium chelatase; SMART: von Willebrand factor type A; SPTR: A1ANG2 Protoporphyrin IX magnesium-chelatase; PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain; TIGRFAM: cobaltochelatase subunit
YP_003808473.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: paa:Paes_1294 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: B4S8D2 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: carbon-nitrogen hydrolase
YP_003808474.1	KEGG: mtp:Mthe_0882 hypothetical protein; SPTR: A0B7J6 Putative uncharacterized protein
YP_003808475.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_4063 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8FM15 TonB-dependent receptor plug; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_003808476.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR017871:IPR003593:IPR003439; KEGG: dal:Dalk_4065 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B8FM17 ABC transporter related; PFAM: ABC transporter; TIGRFAM: cobalt transport protein ATP-binding subunit
YP_003808477.1	InterPro IPR015943:IPR011047:IPR002372; KEGG: dal:Dalk_4066 hypothetical protein; PFAM: pyrrolo-quinoline quinone; SPTR: B8FM18 Putative uncharacterized protein; PFAM: PQQ enzyme repeat
YP_003808478.1	KEGG: dal:Dalk_4067 hypothetical protein; SPTR: B8FM19 Putative uncharacterized protein
YP_003808479.1	COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: dal:Dalk_4068 cobalt transport protein; PFAM: cobalt transport protein; SPTR: B8FM20 Cobalt transport protein; PFAM: Cobalt transport protein
YP_003808480.1	KEGG: rfr:Rfer_2515 hypothetical protein; SPTR: Q21VH1 Putative uncharacterized protein
YP_003808481.1	InterPro IPR013216; KEGG: ade:Adeh_0214 methyltransferase type 11; PFAM: methyltransferase type 11; SPTR: Q2IMF8 methyltransferase type 11; PFAM: methyltransferase domain
YP_003808482.1	COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: dde:Dde_0970 fic family protein; PFAM: filamentation induced by cAMP protein Fic; SPTR: Q313X5 Fic family protein; PFAM: Fic/DOC family
YP_003808483.1	COGs: COG3943 Virulence protein; KEGG: mmw:Mmwyl1_4371 hypothetical protein; SPTR: A6W3I7 Putative uncharacterized protein
YP_003808484.1	COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR011335; KEGG: xcc:XCC2095 DNA helicase related protein; SPTR: Q8P8Y4 DNA helicase related protein; PFAM: Protein of unknown function (DUF3320)
YP_003808485.1	KEGG: mes:Meso_0222 hypothetical protein; SPTR: D0W8Z4 Putative uncharacterized protein
YP_003808486.1	COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterProIPR004473:IPR014001:IPR007409:IPR006935:IPR 001650:IPR014021; KEGG: dde:Dde_3424 HsdR family type I site-specific deoxyribonuclease; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; SPTR: Q30VS9 Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family
YP_003808487.1	COGs: COG0732 restriction endonuclease S subunits; InterPro IPR000055; KEGG: dde:Dde_3425 restriction endonuclease S subunits-like; PFAM: restriction modification system DNA specificity domain; SPTR: Q30VS8 restriction endonuclease S subunits-like; PFAM: Type I restriction modification DNA specificity domain
YP_003808488.1	KEGG: cch:Cag_1524 DNA-damage-inducible protein D; SPTR: Q3AQE6 DNA-damage-inducible protein D
YP_003808489.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002052:IPR003356:IPR002296; KEGG: dde:Dde_3427 type I restriction-modification system methylation subunit-like; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q30VS6 Type I restriction-modification system methylation subunit-like; PFAM: N-6 DNA methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM)
YP_003808490.1	KEGG: pca:Pcar_1481 hypothetical protein; SPTR: Q3A4I0 Putative uncharacterized protein
YP_003808491.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR004546:IPR002052:IPR003356:IPR002296; KEGG: dde:Dde_3429 type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Q30VS4 Type I restriction-modification system, M subunit; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM)
YP_003808492.1	InterPro IPR010093:IPR009061; KEGG: dde:Dde_3430  transcriptional regulator; SPTR: Q30VS3 Putative transcriptional regulator; TIGRFAM: DNA binding domain protein, excisionase family; manually curated; TIGRFAM: DNA binding domain, excisionase family
YP_003808493.1	COGs: COG5614 Bacteriophage head-tail adaptor; InterPro IPR013045:IPR006453; KEGG: dvl:Dvul_0865 phage head-tail adaptor, PFAM:  head-tail adaptor protein; SPTR: A1VBS0 Phage head-tail adaptor, TIGRFAM: phage head-tail adaptor; PFAM: Phage head-tail joining protein; TIGRFAM: phage head-tail adaptor, , SPP1 family
YP_003808494.1	InterPro IPR011738; KEGG: dvm:DvMF_1653 phage conserved hypothetical protein, phiE125 gp8; SPTR: B8DS61 Putative uncharacterized protein; PFAM: Phage QLRG family,  DNA packaging; TIGRFAM: phage conserved hypothetical protein, phiE125 gp8 family; uncharacterized phage protein (possible DNA packaging)
YP_003808495.1	InterPro IPR013838; KEGG: avi:Avi_6187 hypothetical protein; SPTR: B9K2S4 Putative uncharacterized protein
YP_003808496.1	COGs: COG4653 phage phi-C31 gp36 major capsid-like protein; InterPro IPR006444; KEGG: pla:Plav_0906 HK97 family phage major capsid protein; PFAM: major capsid protein HK97; SPTR: A7HRJ6 Phage major capsid protein, HK97 family; TIGRFAM: phage major capsid protein, HK97 family; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family
YP_003808497.1	COGs: COG3740 Phage head maturation protease; InterPro IPR006433; KEGG: dvl:Dvul_0868 HK97 family phage prohead protease; PFAM: peptidase U35 phage prohead HK97; SPTR: A1VBS3 Phage prohead protease, HK97 family; TIGRFAM: phage prohead protease, HK97 family; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family
YP_003808498.1	COGs: COG4695 Phage-related protein; InterPro IPR006427:IPR006944; KEGG: dvl:Dvul_0869 HK97 family phage portal protein; PFAM: portal protein; SPTR: A1VBS4 Phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family
YP_003808499.1	COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: dvl:Dvul_0870 phage terminase; PFAM: Terminase; SPTR: A1VBS5 Phage Terminase; manually curated; PFAM: Phage Terminase
YP_003808500.1	KEGG: rsk:RSKD131_4072 hypothetical protein; SPTR: A8U467 Putative uncharacterized protein
YP_003808501.1	COGs: COG3747 Phage terminase small subunit; InterPro IPR006448; KEGG: dvl:Dvul_0871 P27 family phage terminase small subunit; PFAM: terminase small subunit  P27; SPTR: A1VBS6 Phage terminase, small subunit, , P27 family; TIGRFAM: phage terminase, small subunit, , P27 family; PFAM: Phage terminase, small subunit; TIGRFAM: phage terminase, small subunit, , P27 family
YP_003808502.1	InterPro IPR007712; KEGG: dma:DMR_25210 hypothetical protein; PFAM: plasmid stabilization system; SPTR: C4XT65 Putative uncharacterized protein; manually curated
YP_003808503.1	InterPro IPR001387:IPR010982; KEGG: dma:DMR_25220 Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C4XT66 Xre family DNA-binding protein; PFAM: Helix-turn-helix
YP_003808504.1	InterPro IPR001387:IPR010982; KEGG: geo:Geob_2859 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: B9M286 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix
YP_003808505.1	COGs: COG0863 DNA modification methylase; InterProIPR002052:IPR003115:IPR002941:IPR015840:IPR 001091; KEGG: dvl:Dvul_0872 nuclease; PFAM: ParB domain protein nuclease; DNA methylase N-4/N-6 domain protein; SMART: ParB domain protein nuclease; SPTR: A1VBS7 ParB domain protein nuclease; PFAM: DNA methylase; ParB-like nuclease domain
YP_003808506.1	InterPro IPR003615:IPR002711; KEGG: dvl:Dvul_0873 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: A1VBS8 HNH endonuclease; manually curated; PFAM: HNH endonuclease
YP_003808507.1	COGs: COG4453 conserved hypothetical protein; InterPro IPR014795; KEGG: tgr:Tgr7_2077 protein of unknown function DUF1778; PFAM: Protein of unknown function DUF1778; SPTR: Q1NLF9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1778)
YP_003808508.1	InterPro IPR016181; KEGG: tgr:Tgr7_2078 GCN5-related N-acetyltransferase; SPTR: B8GTR4 GCN5-related N-acetyltransferase; PFAM: acetyltransferase (GNAT) family
YP_003808509.1	COGs: COG4453 conserved hypothetical protein; InterPro IPR014795; KEGG: neu:NE1104 hypothetical protein; PFAM: Protein of unknown function DUF1778; SPTR: Q82VI0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1778)
YP_003808510.1	COGs: COG3378 ATPase; InterPro IPR006500:IPR014818:IPR014015; KEGG: dvl:Dvul_0879 hypothetical protein; PFAM: primase P4; SPTR: A1VBT4 Plasmid/phage primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain
YP_003808511.1	KEGG: dde:Dde_1927 hypothetical protein; SPTR: C6MK25 Putative uncharacterized protein
YP_003808512.1	KEGG: dvl:Dvul_0880 sigma-24 (FecI-like); SPTR: A1VBT5 Sigma-24 (FecI-like); PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003808513.1	KEGG: dvl:Dvul_0881 hypothetical protein; SPTR: A1VBT6 Putative uncharacterized protein
YP_003808514.1	KEGG: dsh:Dshi_3225 hypothetical protein; SPTR: C6MK22 Putative uncharacterized protein
YP_003808515.1	KEGG: dsh:Dshi_3227 hypothetical protein; SPTR: C6MK21 Putative uncharacterized protein
YP_003808516.1	KEGG: dvl:Dvul_0885 hypothetical protein; SPTR: A1VBU0 Putative uncharacterized protein
YP_003808517.1	COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: dvl:Dvul_0886 resolvase domain-containing protein; PFAM: Resolvase domain; Recombinase; SPTR: A1VBU1 Resolvase, N-terminal domain; PFAM: Recombinase; Resolvase, N terminal domain
YP_003808518.1	KEGG: tai:Taci_1503  bacteriophage related protein; SPTR: D1B6T4 Putative bacteriophage related protein; PFAM: Protein of unknown function (DUF2924)
YP_003808519.1	COGs: COG3727 DNA G:T-mismatch repair endonuclease; InterPro IPR004603:IPR011335; KEGG: sfu:Sfum_3854 DNA mismatch endonuclease vsr; PFAM: DNA mismatch endonuclease vsr; SPTR: A0LQ21 T/G mismatch-specific endonuclease; TIGRFAM: DNA mismatch endonuclease Vsr; manually curated; PFAM: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease Vsr
YP_003808520.1	InterPro IPR003594; KEGG: sfu:Sfum_3853 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; SPTR: A0LQ20 Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_003808521.1	COGs: COG1502 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: sfu:Sfum_3852 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; SPTR: A0LQ19 phospholipase D/Transphosphatidylase
YP_003808522.1	InterPro IPR018973; KEGG: sfu:Sfum_3851 hypothetical protein; PFAM: Protein of unknown function DUF1998; SPTR: A0LQ18 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1998)
YP_003808523.1	InterPro IPR001650; KEGG: sfu:Sfum_3850 helicase domain-containing protein; PFAM: helicase domain protein; SMART: helicase domain protein; SPTR: A0LQ17 Helicase domain protein; PFAM: Helicase conserved C-terminal domain
YP_003808524.1	InterPro IPR002052:IPR002296; KEGG: sfu:Sfum_3847 hypothetical protein; SPTR: A0LQ14 Putative uncharacterized protein
YP_003808525.1	KEGG: mba:Mbar_A0447 hypothetical protein; SPTR: A6A375 Putative uncharacterized protein; PFAM: restriction endonuclease
YP_003808526.1	COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR000330:IPR014021; KEGG: sfu:Sfum_3846 helicase domain-containing protein; PFAM: helicase domain protein; SNF2-related protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: A0LQ13 Helicase domain protein; manually curated; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain
YP_003808527.1	COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525:IPR018117; KEGG: sfu:Sfum_3845 DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; SPTR: A0LQ12 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm)
YP_003808528.1	InterPro IPR010093:IPR009061:IPR010260; KEGG: sfu:Sfum_3844 phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; SPTR: A0LQ11 Phage transcriptional regulator, AlpA; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory protein (AlpA); TIGRFAM: DNA binding domain, excisionase family
YP_003808529.1	COGs: COG5614 Bacteriophage head-tail adaptor; InterPro IPR013045:IPR006453; KEGG: dvl:Dvul_0865 phage head-tail adaptor, PFAM:  head-tail adaptor protein; SPTR: A1VBS0 Phage head-tail adaptor, TIGRFAM: phage head-tail adaptor; PFAM: Phage head-tail joining protein; TIGRFAM: phage head-tail adaptor, , SPP1 family
YP_003808530.1	InterPro IPR011738; KEGG: dvl:Dvul_0866 hypothetical protein; SPTR: A1VBS1 Putative uncharacterized protein; TIGRFAM: phage conserved hypothetical protein, phiE125 gp8 family
YP_003808531.1	KEGG: scl:sce0919 hypothetical protein; SPTR: A9EU83 Hypothetical protein
YP_003808532.1	KEGG: cth:Cthe_1718 hypothetical protein; SPTR: A3DG60 Putative uncharacterized protein
YP_003808533.1	InterPro IPR006444; KEGG: dae:Dtox_3666 major capsid protein HK97; PFAM: major capsid protein HK97; SPTR: C8VWL1 Major capsid protein HK97; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family
YP_003808534.1	COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907; KEGG: mno:Mnod_7330 peptidase S14 ClpP; PFAM: peptidase S14 ClpP; SPTR: B9YYU0 ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease
YP_003808535.1	COGs: COG4695 Phage-related protein; InterPro IPR006427:IPR006944; KEGG: dvu:DVU1502 HK97 family portal protein; PFAM: portal protein; SPTR: Q72BY2 Portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family
YP_003808536.1	COGs: COG4626 Phage terminase-like protein large subunit; InterPro IPR005021; KEGG: dvl:Dvul_0870 phage terminase; PFAM: Terminase; SPTR: A1VBS5 Phage Terminase; PFAM: Phage Terminase
YP_003808537.1	COGs: COG3747 Phage terminase small subunit; InterPro IPR006448; KEGG: dvl:Dvul_0871 P27 family phage terminase small subunit; PFAM: terminase small subunit  P27; SPTR: A1VBS6 Phage terminase, small subunit, , P27 family; TIGRFAM: phage terminase, small subunit, , P27 family; PFAM: Phage terminase, small subunit; TIGRFAM: phage terminase, small subunit, , P27 family
YP_003808538.1	InterPro IPR012753:IPR007712; KEGG: bgl:bglu_1g12000 hypothetical protein; PFAM: plasmid stabilization system; SPTR: A7BX33 Plasmid stabilization system; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: Plasmid stabilisation system protein; TIGRFAM: addiction module toxin, RelE/StbE family
YP_003808539.1	InterPro IPR001387:IPR010982; KEGG: geo:Geob_2859 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: A4BMI1 Transcriptional regulator, XRE family protein; PFAM: Helix-turn-helix
YP_003808540.1	COGs: COG0863 DNA modification methylase; InterProIPR017985:IPR003115:IPR002941:IPR015840:IPR 001091; KEGG: sml:Smlt1882  DNA methylase; PFAM: ParB domain protein nuclease; DNA methylase N-4/N-6 domain protein; SMART: ParB domain protein nuclease; SPTR: B2FM38 Putative DNA methylase; PFAM: ParB-like nuclease domain; DNA methylase
YP_003808541.1	COGs: COG0863 DNA modification methylase; InterProIPR002052:IPR003115:IPR002941:IPR015840:IPR 001091; KEGG: dvl:Dvul_0872 nuclease; PFAM: ParB domain protein nuclease; DNA methylase N-4/N-6 domain protein; SMART: ParB domain protein nuclease; SPTR: A1VBS7 ParB domain protein nuclease; PFAM: DNA methylase; ParB-like nuclease domain
YP_003808542.1	InterPro IPR003615:IPR002711; KEGG: dvl:Dvul_0873 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: A1VBS8 HNH endonuclease; PFAM: HNH endonuclease
YP_003808543.1	COGs: COG4453 conserved hypothetical protein; InterPro IPR014795; KEGG: tgr:Tgr7_2077 protein of unknown function DUF1778; PFAM: Protein of unknown function DUF1778; SPTR: Q1NLF9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1778)
YP_003808544.1	InterPro IPR016181; KEGG: tgr:Tgr7_2078 GCN5-related N-acetyltransferase; SPTR: Q1NSG3 GCN5-related N-acetyltransferase; PFAM: acetyltransferase (GNAT) family
YP_003808545.1	COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: gur:Gura_3067 filamentation induced by cAMP protein Fic; PFAM: filamentation induced by cAMP protein Fic; SPTR: A5G620 Filamentation induced by cAMP protein Fic; PFAM: Fic/DOC family
YP_003808546.1	COGs: COG4453 conserved hypothetical protein; InterPro IPR014795; KEGG: pna:Pnap_1572 hypothetical protein; PFAM: Protein of unknown function DUF1778; SPTR: A1VMK8 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1778)
YP_003808547.1	InterPro IPR016181:IPR000182; KEGG: sme:SMc00739 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Q92MI3 Putative uncharacterized protein; manually curated; PFAM: acetyltransferase (GNAT) family
YP_003808548.1	COGs: COG3378 ATPase; InterPro IPR006500:IPR014818:IPR014015; KEGG: dvl:Dvul_0879 hypothetical protein; PFAM: primase P4; SPTR: A1VBT4 Plasmid/phage primase, P4 family; TIGRFAM: phage/plasmid primase, P4 family; PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain
YP_003808549.1	KEGG: dde:Dde_1927 hypothetical protein; SPTR: C6MK25 Putative uncharacterized protein
YP_003808550.1	KEGG: dvl:Dvul_0880 sigma-24 (FecI-like); SPTR: A1VBT5 Sigma-24 (FecI-like); PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003808551.1	KEGG: dvl:Dvul_0881 hypothetical protein; SPTR: A1VBT6 Putative uncharacterized protein
YP_003808552.1	COGs: COG3657 conserved hypothetical protein; InterPro IPR014056:IPR009241; KEGG: dma:DMR_p1_00490 hypothetical protein; PFAM: protein of unknown function DUF891; SPTR: C4XUL4 Putative uncharacterized protein; TIGRFAM: addiction module killer protein; PFAM: Phage derived protein Gp49-like (DUF891); TIGRFAM: probable addiction module killer protein
YP_003808553.1	COGs: COG3636 transcriptional regulator protein; InterPro IPR014057; KEGG: dma:DMR_p1_00500 hypothetical protein; SPTR: C4XUL5 Putative uncharacterized protein; TIGRFAM: addiction module antidote protein; TIGRFAM: probable addiction module antidote protein
YP_003808554.1	KEGG: dvl:Dvul_0882 hypothetical protein; SPTR: A1VBT7 Putative uncharacterized protein
YP_003808555.1	KEGG: dvl:Dvul_0883 hypothetical protein; SPTR: A1VBT8 Putative uncharacterized protein
YP_003808556.1	KEGG: dvl:Dvul_0885 hypothetical protein; SPTR: A1VBU0 Putative uncharacterized protein
YP_003808557.1	COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119:IPR011109; KEGG: dvl:Dvul_0886 resolvase domain-containing protein; PFAM: Resolvase domain; Recombinase; SPTR: A1VBU1 Resolvase, N-terminal domain; PFAM: Recombinase; Resolvase, N terminal domain
YP_003808558.1	KEGG: tai:Taci_1503  bacteriophage related protein; SPTR: D1B6T4 Putative bacteriophage related protein; PFAM: Protein of unknown function (DUF2924)
YP_003808559.1	InterPro IPR009501; KEGG: cbe:Cbei_1426 hypothetical protein; PFAM: protein of unknown function DUF1121; SPTR: C5RES9 Putative uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556
YP_003808560.1	COGs: COG2121 conserved hypothetical protein; InterPro IPR007172; KEGG: dol:Dole_3002 hypothetical protein; PFAM: protein of unknown function DUF374; SPTR: A8ZZ32 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF374)
YP_003808561.1	COGs: COG4581 Superfamily II RNA helicase; InterProIPR014001:IPR001650:IPR011545:IPR012961:IPR 014021; KEGG: sfu:Sfum_3369 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DSH domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: A0LNP0 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase; DSHCT (NUC185) domain
YP_003808562.1	COGs: COG1342 DNA-binding protein; InterPro IPR013324:IPR002852; KEGG: dps:DP2820 hypothetical protein; PFAM: protein of unknown function DUF134; SPTR: Q6AJD1 Putative uncharacterized protein; PFAM: Protein of unknown function DUF134
YP_003808563.1	InterPro IPR013429; KEGG: dal:Dalk_2386 regulatory protein, FmdB family; PFAM: regulatory protein FmdB; SPTR: B8FAZ3 Regulatory protein, FmdB family; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM:  regulatory protein, FmdB family
YP_003808564.1	COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR011006:IPR009082:IPR013655:IPR013656:IPR013767:I PR004358:IPR005467:IPR000700; KEGG: sfu:Sfum_2401 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver; SPTR: A0LKY0 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808565.1	COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR013982:IPR002695; KEGG: sfu:Sfum_3083 AICARFT/IMPCHase bienzyme, formylation region; PFAM: AICARFT/IMPCHase bienzyme formylation region; PRIAM: phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme formylation region; SPTR: C8QXJ9 IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme
YP_003808566.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: dba:Dbac_1818 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: A4A5S6 Bacterial extracellular solute-binding protein, family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_003808567.1	COGs: COG0481 Membrane GTPase LepA; InterProIPR005225:IPR006297:IPR000795:IPR000640:IPR 009000:IPR009022:IPR004161:IPR013842; KEGG: dal:Dalk_0182 GTP-binding protein LepA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; GTP-binding protein LepA domain protein; SPTR: B8FMM5 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; GTP-binding protein LepA C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain
YP_003808568.1	InterPro IPR005899; KEGG: dal:Dalk_1190 hypothetical protein; PFAM: sodium pump decarboxylase subunit gamma; SPTR: A8SBG4 Putative uncharacterized protein; PFAM: Oxaloacetate decarboxylase, gamma chain
YP_003808569.1	COGs: COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase subunit beta; InterPro IPR005661; KEGG: tga:TGAM_2029 methylmalonyl-CoA decarboxylase, beta chain (MmdB); PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase subunit beta; PRIAM: Oxaloacetate decarboxylase; SPTR: C5A2B2 methylmalonyl-CoA decarboxylase, beta chain (MmdB); TIGRFAM: sodium ion-translocating decarboxylase, subunit beta; PFAM: subunit; TIGRFAM: sodium ion-translocating decarboxylase, subunit beta
YP_003808570.1	KEGG: ade:Adeh_2796 serine/threonine protein kinase; SPTR: Q2ILN6 serine/threonine protein kinase
YP_003808571.1	COGs: COG1529 Aerobic-type carbon monoxide dehydrogenase large subunit CoxL/CutL homologs; InterPro IPR000674:IPR008274; KEGG: tro:trd_A0400 xanthine dehydrogenase molybdenum-binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; SPTR: B9L3N6 xanthine dehydrogenase molybdenum-binding subunit; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase; Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
YP_003808572.1	COGs: COG1319 Aerobic-type carbon monoxide dehydrogenase middle subunit CoxM/CutM homologs; InterProIPR016167:IPR016169:IPR005107:IPR016166:IPR 002346; KEGG: smd:Smed_4005 molybdopterin dehydrogenase FAD-binding; PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; SPTR: Q565X8 carbon monoxide dehydrogenase medium chain; PFAM: FAD binding domain in molybdopterin dehydrogenase; CO dehydrogenase flavoprotein C-terminal domain
YP_003808573.1	COGs: COG2080 Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs; InterPro IPR006058:IPR012675:IPR001041; KEGG: reu:Reut_A3075 ferredoxin:(2Fe-2S)-binding; PFAM: ferredoxin; SPTR: A3ZVD6 xanthine dehydrogenase family protein, small subunit; PFAM: 2Fe-2S iron-sulfur cluster binding domain
YP_003808574.1	KEGG: sse:Ssed_3952 hypothetical protein; SPTR: A8G0D3 Putative uncharacterized protein
YP_003808575.1	KEGG: dsa:Desal_0666 UspA domain protein; SPTR: A3ZPQ2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3478)
YP_003808576.1	COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852; KEGG: dsa:Desal_0668 TRAP transporter solute receptor, TAXI family; SPTR: C6BYE3 TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family
YP_003808577.1	InterPro IPR001763; KEGG: tgr:Tgr7_0713 rhodanese domain-containing protein; PFAM: rhodanese domain protein; SMART: rhodanese domain protein; SPTR: B8GMH3 rhodanese domain-containing protein; PFAM: rhodanese-like domain
YP_003808578.1	InterPro IPR011637; KEGG: cai:Caci_5708 DoxX family protein; PFAM: DoxX family protein; SPTR: C7QCB8 DoxX family protein; PFAM: methylamine utilisation protein MauE
YP_003808579.1	InterProIPR017937:IPR012335:IPR012336:IPR000866:IPR 017936; KEGG: drt:Dret_0517 redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; SPTR: C8X0I9 redoxin domain protein; PFAM: redoxin
YP_003808580.1	COGs: COG0390 ABC-type uncharacterized transport system permease component; InterPro IPR005226; KEGG: dal:Dalk_0328 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: B8F905 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0014); TIGRFAM: conserved hypothetical protein TIGR00245
YP_003808581.1	COGs: COG4619 ABC-type uncharacterized transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: dvm:DvMF_1728 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B8DM29 ABC transporter related; PFAM: ABC transporter
YP_003808582.1	COGs: COG2768 Uncharacterized Fe-S center protein; InterPro IPR017900:IPR001450:IPR017896; KEGG: dol:Dole_2297 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A8ZV11 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003808583.1	KEGG: sfu:Sfum_1300 hypothetical protein; SPTR: A0LHU0 Putative uncharacterized protein
YP_003808584.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003018:IPR003661:IPR003594:IPR009082:IPR 004358:IPR005467; KEGG: gur:Gura_0128 GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; SPTR: A5GDK3 Sensor protein; PFAM: GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003808585.1	COGs: COG0297 glycogen synthase; InterPro IPR011835:IPR013534:IPR001296; KEGG: afw:Anae109_0139 glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; PRIAM: Starch synthase; SPTR: A7H6L1 glycogen synthase; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain; glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type
YP_003808586.1	COGs: COG5002 Signal transduction histidine kinase; InterProIPR000014:IPR003661:IPR003594:IPR009082:IPR 013656:IPR004358:IPR005467; KEGG: sth:STH749 two-component sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: Q67RF9 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808587.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: mxa:MXAN_4785 sigma-54 dependent DNA-binding response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q1D326 Sigma-54 dependent DNA-binding response regulator; PFAM: Response regulator receiver domain
YP_003808588.1	COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: mta:Moth_0135 Appr-1-p processing; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; SPTR: A0A021 Putative uncharacterized protein; PFAM: Macro domain
YP_003808589.1	COGs: COG2821 Membrane-bound lytic murein transglycosylase; InterPro IPR005300:IPR010611; KEGG: sat:SYN_02860 membrane-bound lytic murein transglycosylase; PFAM: MltA domain protein; 3D domain protein; SPTR: Q2LSX7 Membrane-bound lytic murein transglycosylase; PFAM: MltA specific insert domain; 3D domain
YP_003808590.1	COGs: COG1578 conserved hypothetical protein; InterPro IPR002791:IPR014444; KEGG: dau:Daud_1372 hypothetical protein; PFAM: protein of unknown function DUF89; SPTR: B1I472 Putative uncharacterized protein; PFAM: Protein of unknown function DUF89
YP_003808591.1	COGs: COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; InterProIPR014001:IPR001650:IPR012337:IPR011545:IPR 018973:IPR014021; KEGG: sfu:Sfum_1698 DEAD/DEAH box helicase domain-containing protein; PFAM: Protein of unknown function DUF1998; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: A0LIY3 DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase
YP_003808592.1	COGs: COG4871 conserved hypothetical protein; InterPro IPR007202; KEGG: sfu:Sfum_3600 Fe-S cluster domain-containing protein; PFAM: Fe-S cluster domain protein; SPTR: A0LPB8 Fe-S cluster domain protein; PFAM: Putative Fe-S cluster
YP_003808593.1	COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: dma:DMR_01880  arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: C4XG99 Putative arsenate reductase; PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin)
YP_003808594.1	InterPro IPR001845:IPR011991; KEGG: cpb:Cphamn1_0567 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Q1JWZ4 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_003808595.1	COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: dvl:Dvul_1440 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: C0GLM6 Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin)
YP_003808596.1	COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR004706:IPR002657; KEGG: sat:SYN_00340 arsenical-resistance protein acr3; PFAM: Bile acid:sodium symporter; SPTR: Q2LXK1 Arsenical-resistance protein acr3; TIGRFAM: arsenical-resistance protein; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein
YP_003808597.1	InterPro IPR012335:IPR012336:IPR013766:IPR017936; KEGG: dat:HRM2_48270 TrxA3; PFAM: thioredoxin domain; SPTR: C0QID1 TrxA3; PFAM: thioredoxin
YP_003808598.1	COGs: COG4232 thiol:disulfide interchange protein; InterPro IPR003834; KEGG: dol:Dole_2887 cycothcome C biogenesis protein transmembrane region; PFAM: cycothcome C biogenesis protein transmembrane region; SPTR: Q30XL8 Putative uncharacterized protein; PFAM: cytochrome C biogenesis protein transmembrane region
YP_003808599.1	InterPro IPR011031; KEGG: gme:Gmet_0534 cycothcome C family protein; SPTR: Q1NVK0 cycothcome C family protein
YP_003808600.1	KEGG: pcsk1; proprotein convertase subtilisin/kexin type 1 ; K01359 proprotein convertase subtilisin/kexin type 1; SPTR: Q1NKB7 Putative uncharacterized protein
YP_003808601.1	KEGG: cai:Caci_6384 monooxygenase FAD-binding; SPTR: C7PWF8 Monooxygenase FAD-binding
YP_003808602.1	COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; InterProIPR002082:IPR006130:IPR019825:IPR006132:IPR 006131; KEGG: dol:Dole_0514 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; PRIAM: Aspartate carbamoyltransferase; SPTR: A8ZU12 Aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase
YP_003808603.1	COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR004722:IPR002195:IPR011059:IPR006680; KEGG: pca:Pcar_1614 dihydrooratase; PFAM: amidohydrolase; SPTR: Q3A449 Dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type
YP_003808604.1	KEGG: xcb:XC_1046 virulence regulator; SPTR: Q8P663 Virulence regulator
YP_003808605.1	COGs: COG1859 RNA:NAD 2'-phosphotransferase; InterPro IPR002745; KEGG: dol:Dole_1544 phosphotransferase KptA/Tpt1; PFAM: phosphotransferase KptA/Tpt1; SPTR: A8ZZU8 phosphotransferase KptA/Tpt1; PFAM: RNA 2'-phosphotransferase, Tpt1 / KptA family
YP_003808606.1	COGs: COG1200 RecG-like helicase; InterProIPR014001:IPR001650:IPR016027:IPR004365:IPR 011545:IPR014021; KEGG: gbm:Gbem_1903 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; SPTR: B5EB56 ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG
YP_003808607.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR015421:IPR015422:IPR015424:IPR000653; KEGG: rca:Rcas_0781 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Q1NSW9 DegT/DnrJ/EryC1/StrS aminotransferase:Aromatic amino acid beta-eliminating lyase/threonine aldolase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_003808608.1	COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: dal:Dalk_1098 silent information regulator protein Sir2; PFAM: Silent information regulator protein Sir2; SPTR: C8QW70 Silent information regulator protein Sir2; PFAM: Sir2 family
YP_003808609.1	COGs: COG2210 conserved hypothetical protein; KEGG: mgm:Mmc1_3745 hypothetical protein; SPTR: A0LE37 Putative uncharacterized protein
YP_003808610.1	KEGG: sfu:Sfum_2782 hypothetical protein; SPTR: A0LM08 Putative uncharacterized protein
YP_003808611.1	COGs: COG0061 sugar kinase; InterPro IPR017437:IPR016064:IPR002504; KEGG: geo:Geob_3461 ATP-NAD/AcoX kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: B9M5P5 Probable inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD kinase
YP_003808612.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR009082:IPR004358:IPR 005467; KEGG: sfu:Sfum_2675 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: A0LLQ1 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003808613.1	KEGG: dol:Dole_2356 hypothetical protein; SPTR: A8ZVH3 Putative uncharacterized protein
YP_003808614.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR012292:IPR009050:IPR 009082:IPR005467; KEGG: hmo:HM1_1290 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C0GWB5 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003808615.1	COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: dau:Daud_1165 rhomboid family protein; PFAM: rhomboid family protein; SPTR: B1I455 rhomboid family protein; PFAM: rhomboid family
YP_003808616.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR005839:IPR006463:IPR006638:IPR013848:IPR 007197:IPR002792; KEGG: gme:Gmet_2296 tRNA-i(6)A37 modification enzyme MiaB; PFAM: Protein of unknown function UPF0004 ; radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q39TA3 (Dimethylallyl)adenosine tRNA methylthiotransferase miaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: TRAM domain; radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family
YP_003808617.1	COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: dal:Dalk_2411 protein of unknown function DUF151; PFAM: protein of unknown function DUF151; SPTR: B8FB18 Putative uncharacterized protein; PFAM: Uncharacterised ACR, COG1259
YP_003808618.1	COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR003141:IPR016195:IPR004013; KEGG: pca:Pcar_1215 hypothetical protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: Q1NUX2 PHP-like; PFAM: PHP domain
YP_003808619.1	InterPro IPR005358; KEGG: sfu:Sfum_2545 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: A0LLC1 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)
YP_003808620.1	COGs: COG1344 Flagellin and related hook-associated protein; KEGG: gme:Gmet_0439 flagellin-like; SPTR: Q1NR20 Flagellin-like:Flagellin hook IN; PFAM: Bacterial flagellin N-terminal helical region
YP_003808621.1	KEGG: ami:Amir_3285 ROK family protein; SPTR: C6W8U2 ROK family protein
YP_003808622.1	InterPro IPR015391:IPR000297; KEGG: dat:HRM2_18710 PpiD1; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; SPTR: C0QBW0 PpiD1; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain
YP_003808623.1	COGs: COG1720 conserved hypothetical protein; InterPro IPR001378:IPR002177; KEGG: mla:Mlab_1087 sodium-transporting two-sector ATPase; PFAM: protein of unknown function UPF0066; SPTR: A2SSF0 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0066; TIGRFAM: conserved hypothetical protein TIGR00104
YP_003808624.1	InterPro IPR001497; KEGG: sfu:Sfum_2405 hypothetical protein; SPTR: A0LKY4 Conserved hypothetical cytosolic protein
YP_003808625.1	COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: adg:Adeg_1793 beta-lactamase domain protein; SPTR: C9R9A2 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003808626.1	COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR014729:IPR011063:IPR012089; KEGG: sfu:Sfum_1613 PP-loop domain-containing protein; PFAM: PP-loop domain protein; SPTR: A0LIP8 PP-loop domain protein; PFAM: PP-loop family
YP_003808627.1	COGs: COG1492 Cobyric acid synthase; InterPro IPR004459:IPR002586:IPR011698:IPR017929; KEGG: sfu:Sfum_1739 cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase; SPTR: A0LJ24 Cobyric acid synthase; TIGRFAM: cobyric acid synthase CobQ; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyric acid synthase CobQ
YP_003808628.1	KEGG: pca:Pcar_0881 hypothetical protein; SPTR: Q3A671 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3573)
YP_003808629.1	COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: dat:HRM2_23190 CbiP; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: C0QES2 CbiP; PFAM: Nickel uptake substrate-specific transmembrane region
YP_003808630.1	COGs: COG0310 ABC-type Co2+ transport system permease component; InterPro IPR002751; KEGG: dvm:DvMF_3139 cobalt transport protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; SPTR: B8DND3 Cobalamin (Vitamin B12) biosynthesis CbiM protein; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM
YP_003808631.1	KEGG: dma:DMR_22260 hypothetical protein; SPTR: C4XSM0 Putative uncharacterized protein
YP_003808632.1	COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR012809:IPR003339; KEGG: dvm:DvMF_3138 cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; SPTR: B8DND2 Cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ
YP_003808633.1	COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: rsq:Rsph17025_3433 hypothetical protein; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: A4WY46 Putative uncharacterized protein; PFAM: ABC transporter
YP_003808634.1	KEGG: ilo:IL0280 hypothetical protein; SPTR: Q5QUM7 Uncharacterized conserved protein; PFAM: SprA-related family
YP_003808635.1	InterPro IPR009875; KEGG: dal:Dalk_1702 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: B8FEJ5 Type IV pilus assembly PilZ; PFAM: PilZ domain
YP_003808636.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR011006:IPR009082:IPR013655:IPR013767:IPR004358:I PR005467:IPR000700; KEGG: dal:Dalk_0107 PAS/PAC sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: B8FKK2 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808637.1	InterPro IPR002345:IPR011990; KEGG: sti:Sthe_1174 tetratricopeptide TPR_4; SPTR: D1C2Z3 Tetratricopeptide TPR_4; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase
YP_003808638.1	COGs: COG0058 Glucan phosphorylase; InterPro IPR011834:IPR000811; KEGG: dba:Dbac_2874 alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; PRIAM: phosphorylase; SPTR: C7LUN4 Alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: carbohydrate phosphorylase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases
YP_003808639.1	KEGG: dal:Dalk_3202 hypothetical protein; SPTR: B8FGI3 Putative uncharacterized protein
YP_003808640.1	COGs: COG1254 Acylphosphatase; InterPro IPR017968:IPR001792; KEGG: ade:Adeh_0694 acylphosphatase; PFAM: acylphosphatase; SPTR: Q2INT8 Acylphosphatase; PFAM: Acylphosphatase
YP_003808641.1	COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); InterProIPR001679:IPR018239:IPR013840:IPR003583:IPR 001357:IPR012340:IPR010994:IPR016027:IPR013839:IPR004150:I PR004149; KEGG: maq:Maqu_1167 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; zinc-finger NAD-dependent DNA ligase C4-type; BRCT domain protein; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; SPTR: A1TZT9 DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; NAD-dependent DNA ligase C4 zinc finger domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent
YP_003808642.1	COGs: COG0009 Putative translation factor (SUA5); InterPro IPR004388:IPR017945:IPR006070; KEGG: sfu:Sfum_2120 SUA5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SPTR: A0LK51 Translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_003808643.1	COGs: COG1109 phosphomannomutase; InterProIPR016066:IPR016055:IPR005844:IPR005845:IPR 005846:IPR005843:IPR005841; KEGG: sfu:Sfum_0481 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase; SPTR: A0LFH9 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase, C-terminal domain; phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_003808644.1	COGs: COG1482 phosphomannose isomerase; InterPro IPR014710:IPR011051:IPR001250:IPR014628; KEGG: dge:Dgeo_0321 mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type I; PRIAM: Mannose-6-phosphate isomerase; SPTR: Q1J1L0 Mannose-6-phosphate isomerase; PFAM: phosphomannose isomerase type I; TIGRFAM: mannose-6-phosphate isomerase, class I
YP_003808645.1	COGs: COG2035 membrane protein; InterPro IPR007163; KEGG: dsa:Desal_1808 protein of unknown function DUF368; PFAM: protein of unknown function DUF368; SPTR: C6BTU0 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF368)
YP_003808646.1	COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835:IPR001538; KEGG: sat:SYN_01031 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; mannose-6-phosphate isomerase type II; SPTR: Q2LSE4 Mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
YP_003808647.1	COGs: COG1968 Uncharacterized bacitracin resistance protein; InterPro IPR003824; KEGG: dol:Dole_1174 bacitracin resistance protein BacA; PFAM: Bacitracin resistance protein BacA; SPTR: A8ZXM2 Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP
YP_003808648.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119:IPR010992; KEGG: sfu:Sfum_1425 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: A0LI64 histone family protein DNA-binding protein; PFAM: Bacterial DNA-binding protein; TIGRFAM: integration host factor, subunit beta
YP_003808649.1	COGs: COG3357 transcriptional regulator protein; KEGG: sfu:Sfum_0245 transcriptional regulator; SPTR: A0LEU4 Transcriptional regulator containing an HTH domain fused to a Zn-ribbon; manually curated
YP_003808650.1	KEGG: dma:DMR_31810 hypothetical protein; SPTR: C4XJC2 Putative uncharacterized protein
YP_003808651.1	COGs: COG2206 HD-GYP domain; InterPro IPR003607:IPR006674; KEGG: dma:DMR_44230 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C4XR34 Putative uncharacterized protein; PFAM: HD domain
YP_003808652.1	KEGG: cgb:cg0364 membrane protein; SPTR: C0G2P9 Putative uncharacterized protein
YP_003808653.1	KEGG: tpe:Tpen_1015 hypothetical protein; SPTR: Q4R2X9 Testis cDNA clone: QtsA-21489, similar to human radial spokehead-like 1 (RSHL1)
YP_003808655.1	InterPro IPR007730; KEGG: ter:Tery_4644 allergen V5/TPX-1 related; PFAM: Sporulation domain protein; SPTR: Q10VV9 Allergen V5/Tpx-1 related; PFAM: Sporulation related domain
YP_003808656.1	KEGG: scl:sce5123 hypothetical protein; SPTR: A9FRF2 Putative uncharacterized protein
YP_003808657.1	KEGG: ara:Arad_9834 hypothetical protein; SPTR: B9JLQ5 Putative uncharacterized protein
YP_003808658.1	COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303:IPR014710:IPR011051:IPR013096; KEGG: chl:Chy400_0637 class II aldolase/adducin family protein; PFAM: class II aldolase/adducin family protein; cupin; SPTR: B9LJP0 class II aldolase/adducin family protein; PFAM: Cupin domain; class II Aldolase and Adducin N-terminal domain
YP_003808659.1	InterPro IPR012349:IPR009002:IPR011576; KEGG: sat:SYN_02087  cytoplasmic protein; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Q2LY54 Hypothetical cytosolic protein; PFAM: Pyridoxamine 5'-phosphate oxidase
YP_003808660.1	COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterProIPR005861:IPR001917:IPR015421:IPR015422:IPR 015424:IPR004839; KEGG: sfu:Sfum_2116 histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; SPTR: A0LK47 Histidinol phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase
YP_003808661.1	COGs: COG0283 Cytidylate kinase; InterPro IPR003136:IPR011994; KEGG: gbm:Gbem_3257 cytidylate kinase; PFAM: cytidylate kinase region; SPTR: C8R0Z9 Cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase
YP_003808662.1	COGs: COG0539 ribosomal protein S1; InterProIPR018032:IPR012340:IPR016027:IPR003029:IPR 000110; KEGG: sfu:Sfum_2118 ribosomal protein S1; PFAM: RNA binding S1 domain protein; SPTR: A0LK49 SSU ribosomal protein S1P; TIGRFAM: ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1
YP_003808663.1	COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004635:IPR002142; KEGG: sfu:Sfum_2119 signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; SPTR: A0LK50 Signal peptide peptidase A. serine peptidase. MEROPS family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type
YP_003808664.1	COGs: COG2981 Uncharacterized protein involved in cysteine biosynthesis; InterPro IPR007496; KEGG: rrs:RoseRS_3441 hypothetical protein; PFAM: protein of unknown function DUF540; SPTR: A5UYU6 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF540)
YP_003808665.1	KEGG: psb:Psyr_3722 amino acid adenylation; SPTR: Q4ZQ18 Amino acid adenylation
YP_003808666.1	COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR003594:IPR002545:IPR009082:IPR004105:IPR 004358:IPR005467; KEGG: rpe:RPE_1193 CheA signal transduction histidine kinases; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; SPTR: Q07SD9 CheA signal transduction histidine kinases; manually curated; PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain
YP_003808667.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR020845:IPR000873; KEGG: rce:RC1_1843 propionate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B6INQ5 Propionate--CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme
YP_003808668.1	COGs: COG1773 rubredoxin; InterPro IPR018527:IPR004039:IPR001052; KEGG: dba:Dbac_2021 rubredoxin-type Fe(Cys)4 protein; PFAM: rubredoxin-type Fe(Cys)4 protein; SPTR: C7LND8 rubredoxin; PFAM: rubredoxin
YP_003808669.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004010; KEGG: sat:SYN_00971 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache domain protein; SMART: chemotaxis sensory transducer; SPTR: Q2LSK6 methyl-accepting chemotaxis protein; PFAM: Cache domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003808670.1	COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR018320:IPR019760:IPR002421:IPR008918:IPR 002562:IPR001098:IPR012337:IPR020045:IPR020046:IPR020047:I PR002298; KEGG: dal:Dalk_2747 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; DNA-directed DNA polymerase; SPTR: B8FKR7 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I
YP_003808671.1	KEGG: adg:Adeg_2090 protein of unknown function UPF0153; SPTR: C9RA38 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)
YP_003808672.1	InterPro IPR006162; KEGG: gsu:GSU0336 hypothetical protein; SPTR: Q74GB0 Putative uncharacterized protein; PFAM: Putative F0F1-ATPase subunit (ATPase_gene1)
YP_003808673.1	InterPro IPR008413; KEGG: dal:Dalk_2857 ATP synthase I; PFAM: ATP synthase I; SPTR: B8FBA3 ATP synthase I; PFAM: ATP synthase I chain
YP_003808674.1	COGs: COG0356 F0F1-type ATP synthase subunit a; InterPro IPR000568; KEGG: sfu:Sfum_1605 ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; SPTR: A0LIP0 ATP synthase subunit a; TIGRFAM: ATP synthase F0, A subunit; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
YP_003808675.1	InterPro IPR002379:IPR000454:IPR020537:IPR005953; KEGG: dol:Dole_0631 ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; SPTR: A8ZUM8 ATP synthase subunit c; TIGRFAM: ATP synthase F0, C subunit; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c
YP_003808676.1	COGs: COG2344 AT-rich DNA-binding protein; InterPro IPR009718:IPR003781:IPR011991:IPR016040; KEGG: sfu:Sfum_1603 redox-sensing transcriptional repressor REX; PFAM: CoA-binding domain protein; Rex DNA-binding domain protein; SPTR: A0LIN8 Redox-sensing transcriptional repressor rex; PFAM: CoA binding domain; Putative DNA-binding protein N-terminus
YP_003808677.1	COGs: COG0178 excinuclease ATPase subunit; InterPro IPR003439:IPR003593:IPR017871:IPR004602; KEGG: pca:Pcar_0087 excinuclease ABC, A subunit; PFAM: ABC transporter related; SPTR: Q3A8E2 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_003808678.1	COGs: COG3065 Starvation-inducible outer membrane lipoprotein; InterPro IPR004658; KEGG: sat:SYN_00736 outer membrane protein Slp precursor; PFAM: outer membrane lipoprotein Slp; SPTR: Q2LVC8 Outer membrane protein slp; PFAM: Outer membrane lipoprotein Slp family; TIGRFAM: outer membrane lipoprotein, Slp family
YP_003808679.1	COGs: COG1995 pyridoxal phosphate biosynthesis protein; InterPro IPR005255; KEGG: gem:GM21_0061 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: C6E7W5 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase
YP_003808680.1	InterPro IPR002109:IPR012335:IPR012336; KEGG: rrs:RoseRS_1323 YruB family glutaredoxin-like protein; PFAM: glutaredoxin; SPTR: A5USX4 Glutaredoxin-like protein, YruB-family; PFAM: Glutaredoxin
YP_003808681.1	InterPro IPR008979; KEGG: lpj:JDM1_0171 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; SPTR: Q88ZW2 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
YP_003808682.1	KEGG: Ehmt2; euchromatic histone lysine N-methyltransferase 2 ; K11420 euchromatic histone-lysine N-methyltransferase; SPTR: A2CG74 Euchromatic histone lysine N-methyltransferase 2
YP_003808683.1	KEGG: pca:Pcar_2208 peptidoglycan synthetase; SPTR: C4RDQ9 Putative uncharacterized protein
YP_003808684.1	KEGG: cpi:Cpin_6628 hypothetical protein; SPTR: C7PMC7 Putative uncharacterized protein
YP_003808685.1	KEGG: SNF2 superfamily protein; SPTR: A8IM60 Silk fibroin
YP_003808686.1	KEGG: cag:Cagg_1873 hypothetical protein; SPTR: B8GBE0 Putative uncharacterized protein
YP_003808687.1	COGs: COG0309 Hydrogenase maturation factor; InterPro IPR000728:IPR010918:IPR011854:IPR016188; KEGG: dma:DMR_20380 hydrogenase formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; SPTR: C4XRI4 Hydrogenase formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: hydrogenase expression/formation protein HypE
YP_003808688.1	COGs: COG0409 Hydrogenase maturation factor; InterPro IPR002780; KEGG: glo:Glov_3063 hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; SPTR: B6G9X3 Putative uncharacterized protein; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD
YP_003808689.1	COGs: COG0068 Hydrogenase maturation factor; InterProIPR001792:IPR011125:IPR006070:IPR004421:IPR 017945:IPR017968; KEGG: cte:CT1797 hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; SPTR: Q8KBJ0 Hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF
YP_003808690.1	COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR003495:IPR012202:IPR004392; KEGG: dvl:Dvul_0929 hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; SPTR: Q729M1 Hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB
YP_003808691.1	COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); InterPro IPR000688:IPR020538; KEGG: sfu:Sfum_4011 hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; SPTR: A0LQH5 Hydrogenase nickel insertion protein HypA; TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: Hydrogenase expression/synthesis hypA family; TIGRFAM: hydrogenase nickel insertion protein HypA
YP_003808692.1	COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460:IPR012338:IPR011816; KEGG: dol:Dole_2534 1A family penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: peptidoglycan glycosyltransferase; SPTR: A8ZWA4 Penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family
YP_003808693.1	COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterPro IPR000644:IPR013785; KEGG: dvm:DvMF_2848 CBS domain containing membrane protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: B8DRE8 CBS domain containing membrane protein; PFAM: CBS domain
YP_003808694.1	COGs: COG1199 Rad3-related DNA helicase; InterPro IPR014001:IPR006555:IPR014013:IPR001650; KEGG: noc:Noc_1364 helicase C2; SMART: helicase c2; DEAD-like helicase; SPTR: Q3JBD8 Helicase c2; PFAM: DEAD_2; DEAD/DEAH box helicase
YP_003808695.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: dal:Dalk_0574 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8FHJ1 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003808696.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_2036 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FG52 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003808697.1	InterPro IPR019222; KEGG: drt:Dret_1951 MJ0042 family finger-like protein; PFAM: Protein of unknown function DUF2143; SPTR: C0GMP0 MJ0042 family finger-like protein; PFAM: Yip1 domain
YP_003808698.1	KEGG: dol:Dole_0676 hypothetical protein; SPTR: A8ZUS3 Putative uncharacterized protein
YP_003808699.1	InterPro IPR005561:IPR011991:IPR011006; KEGG: bgl:bglu_2g09980 response regulator NasT; PFAM: ANTAR domain protein; SPTR: C5AHM2 Response regulator NasT; PFAM: ANTAR domain
YP_003808700.1	COGs: COG4822 Cobalamin biosynthesis protein CbiK Co2+ chelatase; InterPro IPR010388; KEGG: dat:HRM2_07680 CbiK1; PFAM: anaerobic cobalt chelatase; SPTR: C0QJM9 CbiK1; PFAM: Cobalt chelatase (CbiK)
YP_003808701.1	COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644; KEGG: dvm:DvMF_2848 CBS domain containing membrane protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: B8DRE8 CBS domain containing membrane protein; PFAM: CBS domain
YP_003808702.1	COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641:IPR016035; KEGG: drt:Dret_1244 patatin; PFAM: patatin; SPTR: C8X1W0 patatin; PFAM: patatin-like phospholipase
YP_003808703.1	KEGG: pmy:Pmen_3871 MotA/TolQ/ExbB proton channel; SPTR: A4XZ52 MotA/TolQ/ExbB proton channel
YP_003808704.1	COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterProIPR003781:IPR013650:IPR016102:IPR011761:IPR 016040; KEGG: dal:Dalk_0366 CoA-binding domain protein; PFAM: CoA-binding domain protein; ATP-grasp domain protein; SPTR: B8FGY7 CoA-binding domain protein; PFAM: CoA binding domain
YP_003808706.1	KEGG: gur:Gura_1503 hypothetical protein; SPTR: Q0EY64 Putative uncharacterized protein; PFAM: Rho termination factor, N-terminal domain
YP_003808707.1	InterPro IPR013509:IPR000788:IPR013344; KEGG: ade:Adeh_2484 ribonucleotide reductase large subunit; PFAM: ribonucleotide reductase large subunit; ribonucleotide reductase large subunit domain protein; SPTR: Q2IKS0 ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase, all-alpha domain; ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
YP_003808708.1	InterPro IPR012307:IPR013022; KEGG: paa:Paes_1281 xylose isomerase domain protein TIM barrel; PFAM: xylose isomerase domain protein TIM barrel; SPTR: B4S8B9 xylose isomerase domain protein TIM barrel; PFAM: xylose isomerase-like TIM barrel
YP_003808709.1	InterPro IPR007168:IPR014320; KEGG: dba:Dbac_1223 phage shock protein C, PspC; PFAM: PspC domain protein; SPTR: C7LRU3 Phage shock protein C, PspC; TIGRFAM: phage shock protein C; PFAM: PspC domain; TIGRFAM: phage shock protein C
YP_003808710.1	KEGG: dat:HRM2_42180  phage shock protein PspB; SPTR: C0QD42 Putative phage shock protein PspB; TIGRFAM: phage shock protein B
YP_003808711.1	COGs: COG1842 Phage shock protein A (IM30) suppresses sigma54-dependent transcription; InterPro IPR007157; KEGG: dat:HRM2_42190 PspA2; PFAM: PspA/IM30 family protein; SPTR: C0QD43 PspA2; PFAM: PspA/IM30 family; TIGRFAM: phage shock protein A
YP_003808712.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR002078:IPR002197:IPR003593:IPR009057:IPR 014317; KEGG: dba:Dbac_1226 sigma54 specific transcriptional activator, PspF, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; SPTR: C7LRU6 Sigma54 specific transcriptional activator, PspF, Fis family; TIGRFAM: psp operon transcriptional activator; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: psp operon transcriptional activator PspF
YP_003808713.1	InterPro IPR001986:IPR019897; KEGG: gsu:GSU2692 immunogenic protein family protein; SPTR: Q749Q0 Immunogenic protein family protein
YP_003808714.1	COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: afu:AF1436 iron-sulfur flavoprotein (isf-1); PFAM: NADPH-dependent FMN reductase; SPTR: O28836 Iron-sulfur flavoprotein AF_1436; PFAM: NADPH-dependent FMN reductase
YP_003808715.1	InterPro IPR000551:IPR009061; KEGG: det:DET1566 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Q3Z686 Transcriptional regulator, MerR family
YP_003808716.1	COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376; KEGG: dal:Dalk_0631 formyl transferase domain protein; PFAM: formyl transferase domain protein; SPTR: B8FJQ8 formyl transferase domain protein; PFAM: formyl transferase
YP_003808717.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: sat:SYN_02667 alpha-D-QuiNAc alpha-1,3-galactosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Q2LWN3 Alpha-D-QuiNAc alpha-1,3-galactosyltransferase; PFAM: glycosyl transferases group 1
YP_003808718.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: rce:RC1_1660 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B6ING1 UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family
YP_003808719.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: bpt:Bpet4024  glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: A9I741 Putative glycosyltransferase; PFAM: glycosyl transferases group 1
YP_003808720.1	InterPro IPR007016; KEGG: dma:DMR_13570 hypothetical membrane protein; PFAM: O-antigen polymerase; SPTR: C4XMQ7 Hypothetical membrane protein; PFAM: O-Antigen ligase
YP_003808721.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040:IPR008089; KEGG: rba:RB9168 nucleotide sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Q7ULZ7 Nucleotide sugar epimerase; PFAM: NAD dependent epimerase/dehydratase family
YP_003808722.1	COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331:IPR000408; KEGG: ade:Adeh_4279 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: Q2IHI5 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase
YP_003808723.1	COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR001789:IPR000673:IPR008248:IPR011006; KEGG: dal:Dalk_0655 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; PRIAM: Protein-glutamate methylesterase; SMART: response regulator receiver; SPTR: B8FJT2 Response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; Response regulator receiver domain
YP_003808724.1	KEGG: dat:HRM2_34450 hypothetical protein; SPTR: C0Q915 Putative uncharacterized protein
YP_003808725.1	COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; InterPro IPR001789:IPR011006; KEGG: sat:SYN_00967 chemotaxis protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q2LSK7 Chemotaxis protein; PFAM: Response regulator receiver domain
YP_003808726.1	COGs: COG1639 signal transduction protein; InterPro IPR013976:IPR003607:IPR006675; KEGG: dal:Dalk_0653 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: C8QWH2 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG
YP_003808727.1	COGs: COG1871 Chemotaxis protein; stimulates methylation of MCP protein; InterPro IPR005659; KEGG: dat:HRM2_34420 CheD1; PFAM: CheD family protein; SPTR: C0QMK0 CheD1; PFAM: CheD; stimulates methylation of MCP proteins
YP_003808728.1	COGs: COG1352 methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: dal:Dalk_0657 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: C8QWH0 MCP methyltransferase, CheR-type; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain
YP_003808729.1	COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: sus:Acid_5368 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; SPTR: Q01VJ8 CheW protein; PFAM: CheW-like domain
YP_003808730.1	COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR008207:IPR004105:IPR003594:IPR002545:IPR 005467:IPR004358:IPR009082; KEGG: dal:Dalk_0656 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SPTR: Q1NT42 CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt; PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain
YP_003808731.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119:IPR010992; KEGG: pdi:BDI_3602 DNA-binding protein HU-beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: B7BGA1 Putative uncharacterized protein (Fragment); PFAM: Bacterial DNA-binding protein
YP_003808732.1	COGs: COG2001 conserved hypothetical protein; InterPro IPR020603:IPR003444; KEGG: sdn:Sden_0346 cell division protein MraZ; PFAM: MraZ domain; SPTR: Q12SD5 Protein mraZ; TIGRFAM: MraZ protein; PFAM: MraZ protein; TIGRFAM: mraZ protein
YP_003808733.1	COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; InterPro IPR002903; KEGG: sth:STH1201  S-adenosylmethionine-dependent methyltransferase; PFAM: methyltransferase; SPTR: Q67Q57 S-adenosyl-L-methionine-dependent methyltransferase mraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW
YP_003808734.1	KEGG: sfu:Sfum_3464 hypothetical protein; SPTR: A0LNY3 Putative uncharacterized protein; PFAM: Cell division protein FtsL; TIGRFAM: cell division protein FtsL
YP_003808735.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR005543:IPR012338; KEGG: gbm:Gbem_0485 penicillin-binding protein transpeptidase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; PRIAM: peptidoglycan glycosyltransferase; SPTR: B5EBP5 Penicillin-binding protein transpeptidase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; PASTA domain
YP_003808736.1	COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR000713:IPR013221:IPR004101:IPR005761; KEGG: gme:Gmet_0407 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: Q39YM4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases
YP_003808737.1	COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR000713:IPR013221:IPR004101:IPR005863; KEGG: dol:Dole_2791 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- -D-alanyl- D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: A8ZXW7 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-d iaminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_003808738.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018480:IPR018481:IPR003524; KEGG: sat:SYN_01743 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4, conserved region; phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR: Q2LR51 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-trans ferase; PFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase
YP_003808739.1	COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR013221:IPR004101:IPR016040:IPR005762; KEGG: sfu:Sfum_3468 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: C8R1S8 UDP-N-acetylmuramoylalanine/D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_003808740.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182:IPR018365:IPR013437; KEGG: mxa:MXAN_5605 cell cycle protein FtsW; PFAM: cell cycle protein; SPTR: Q1D0S9 Cell cycle protein, FtsW/RodA/SpoVE family; TIGRFAM: cell division protein FtsW; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; cell division protein FtsW
YP_003808741.1	COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR004276:IPR007235:IPR006009; KEGG: mxa:MXAN_5604 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: glycosyltransferase 28 domain; glycosyl transferase family 28; PRIAM: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; SPTR: Q09BM3 Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyltransferase family 28 N-terminal domain; glycosyltransferase family 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
YP_003808742.1	COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterProIPR000713:IPR013221:IPR004101:IPR016040:IPR 005758; KEGG: gur:Gura_3973 UDP-N-acetylmuramate--L-alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; SPTR: A5G8J9 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase
YP_003808743.1	COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; InterProIPR006094:IPR011601:IPR016167:IPR016169:IPR 016166:IPR003170; KEGG: sth:STH1211 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: Q67Q47 UDP-N-acetylenolpyruvoylglucosamine reductase 2; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase
YP_003808744.1	COGs: COG1589 Cell division septal protein; InterPro IPR013685; KEGG: glo:Glov_0666 polypeptide-transport-associated domain protein FtsQ-type; PFAM: polypeptide-transport-associated domain protein FtsQ-type; SPTR: Q39YL6 D-alanine--D-alanine ligase; PFAM: POTRA domain, FtsQ-type
YP_003808745.1	COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR003494:IPR020537:IPR020823; KEGG: dma:DMR_33230 cell division protein FtsA; PFAM: cell division protein FtsA; SPTR: C4XK65 Cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA
YP_003808746.1	COGs: COG0206 Cell division GTPase; InterProIPR003008:IPR018316:IPR000158:IPR019746:IPR 008280:IPR020805; KEGG: sat:SYN_00437 cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Q2LR53 Cell division protein ftsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ
YP_003808747.1	InterPro IPR018711; KEGG: sfu:Sfum_0247 hypothetical protein; PFAM: Protein of unknown function DUF2233, periplasmic; SPTR: A0LEU6 Putative uncharacterized protein; PFAM: Predicted periplasmic protein (DUF2233)
YP_003808748.1	SPTR: C5SGD3 glycosyl hydrolase family 88
YP_003808749.1	KEGG: eba:ebB187 hypothetical protein; SPTR: Q5P0N5 Putative uncharacterized protein
YP_003808750.1	InterPro IPR000182:IPR016181; KEGG: sat:SYN_01678 acetyltransferase (GNAT) family protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Q2LXS4 acetyltransferase (GNAT) family protein; PFAM: acetyltransferase (GNAT) family
YP_003808751.1	KEGG: sat:SYN_00563  cytoplasmic protein; SPTR: Q2LSC7 Hypothetical cytosolic protein; PFAM: Putative transposon-encoded protein (DUF2080)
YP_003808752.1	InterPro IPR003115; KEGG: rsk:RSKD131_4067 DNA methylase N-4/N-6; SPTR: B9KV49 DNA methylase N-4/N-6; PFAM: ParB-like nuclease domain
YP_003808753.1	KEGG: mta:Moth_2083 copper amine oxidase-like; SPTR: Q2RGR3 Copper amine oxidase-like
YP_003808754.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR004033; KEGG: tth:TTC1503 ubiquinone/menaquinone biosynthesis methyltransferase UbiE; PFAM: UbiE/COQ5 methyltransferase; SPTR: Q72HI4 Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases
YP_003808755.1	KEGG: ade:Adeh_1251 hypothetical protein; SPTR: Q2IQE6 Putative uncharacterized protein
YP_003808756.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197:IPR006638:IPR013785; KEGG: pca:Pcar_2195 Fe-S oxidoreductase; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q3A2H3 Predicted Fe-S oxidoreductase; PFAM: radical SAM superfamily
YP_003808757.1	KEGG: atc:AGR_pAT_436 hypothetical protein; SPTR: Q7D3E4 Transcriptional regulator, LysR family
YP_003808758.1	InterPro IPR000361; KEGG: dps:DP0988 hypothetical protein; PFAM: HesB/YadR/YfhF-family protein; SPTR: Q6APK7 Putative uncharacterized protein; PFAM: Iron-sulphur cluster biosynthesis
YP_003808759.1	Contains Selenocysteine; InterPro IPR000361; KEGG: dsa:Desal_0629 HesB/YadR/YfhF-family protein; PFAM: HesB/YadR/YfhF-family protein; SPTR: C6BYA4 HesB/YadR/YfhF-family protein; manually curated; PFAM: Iron-sulphur cluster biosynthesis
YP_003808760.1	COGs: COG2264 ribosomal protein L11 methylase; InterPro IPR007848; KEGG: gbm:Gbem_0241 ribosomal protein L11 methyltransferase; PFAM: methyltransferase small; SPTR: Q1NRC0 ribosomal protein L11 methyltransferase; PFAM: ribosomal protein L11 methyltransferase (PrmA)
YP_003808761.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: dal:Dalk_0574 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8FHJ1 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003808762.1	COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: bph:Bphy_2300 acyltransferase 3; PFAM: acyltransferase 3; SPTR: B2JFA7 Acyltransferase 3; PFAM: Acyltransferase family
YP_003808763.1	InterPro IPR001647:IPR012287:IPR009057:IPR011075; KEGG: dat:HRM2_21660 HTH-type transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C0QDK0 HTH-type transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_003808764.1	KEGG: afu:AF0686 hypothetical protein; SPTR: O29571 Uncharacterized protein AF_0686
YP_003808765.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013655:IPR013767:IPR013656:IPR003661:IPR 003594:IPR001789:IPR000014:IPR001610:IPR005467:IPR000700:I PR004358:IPR011006:IPR009082; KEGG: drt:Dret_1152 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase A domain protein; response regulator receiver; SPTR: C8X1L8 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808766.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: dvm:DvMF_2325 ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C5S8R5 extracellular solute-binding protein family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein
YP_003808767.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647:IPR012287:IPR009057:IPR011075; KEGG: scl:sce1733 HTH-type transcriptional regulator AcrR; PFAM: regulatory protein TetR; SPTR: A9FIV1 HTH-type transcriptional regulator acrR; PFAM: Bacterial regulatory proteins, tetR family
YP_003808768.1	COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: hor:Hore_08450 efflux transporter, , hydrophobe/amphiphile efflux-3 (HAE3) family; SPTR: B8CWD3 Efflux transporter, , hydrophobe/amphiphile efflux-3 (HAE3) family; PFAM: MMPL family; TIGRFAM: The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family
YP_003808769.1	KEGG: fsu:Fisuc_0003 hypothetical protein; SPTR: C9RIX4 Putative uncharacterized protein
YP_003808770.1	KEGG: fsu:Fisuc_0005 hypothetical protein; SPTR: C9RIX6 Putative uncharacterized protein
YP_003808771.1	InterPro IPR018493; KEGG: cyt:cce_0960 hypothetical protein; SPTR: C8Q4V3 Lipoprotein; manually curated; PFAM: Orthopoxvirus protein of unknown function (DUF830)
YP_003808772.1	COGs: COG0426 flavoprotein; InterPro IPR008254:IPR016440; KEGG: ppd:Ppro_1203 metallo-beta-lactamase/flavodoxin domain-containing protein; PFAM: flavodoxin/nitric oxide synthase; SPTR: A1ANA4 beta-lactamase domain protein; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily
YP_003808773.1	InterPro IPR013096:IPR010462:IPR014710:IPR011051; KEGG: dal:Dalk_1201 cupin; PFAM: cupin; SPTR: C0GMJ0 cupin; PFAM: Cupin domain
YP_003808774.1	KEGG: dde:Dde_0282 hypothetical protein; SPTR: Q316R3 TPR repeat
YP_003808775.1	COGs: COG0716 Flavodoxins; InterPro IPR008254:IPR001094:IPR001226:IPR010087; KEGG: dsa:Desal_0805 flavodoxin; PFAM: flavodoxin/nitric oxide synthase; SPTR: P18086 Flavodoxin; TIGRFAM: flavodoxin; PFAM: Flavodoxin; TIGRFAM: flavodoxin, short chain
YP_003808776.1	InterPro IPR019613; KEGG: abu:Abu_2286 hypothetical protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: A8EX21 Putative uncharacterized protein; PFAM: Nickel uptake substrate-specific transmembrane region
YP_003808777.1	KEGG: dal:Dalk_2737 hypothetical protein; SPTR: B8FKQ7 Putative uncharacterized protein
YP_003808778.1	KEGG: abu:Abu_2286 hypothetical protein; SPTR: A8EX21 Putative uncharacterized protein; PFAM: Nickel uptake substrate-specific transmembrane region
YP_003808779.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR018522; KEGG: amr:AM1_A0170 TonB-dependent receptor, PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A8ZKH7 TonB-dependent receptor, PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor
YP_003808780.1	InterPro IPR001584:IPR012337:IPR009057; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain
YP_003808781.1	KEGG: dol:Dole_2689 SH3 type 3 domain-containing protein; SPTR: A8ZXB3 SH3 type 3 domain protein; PFAM: Protein of unknown function (DUF1302)
YP_003808782.1	KEGG: dol:Dole_0396 hypothetical protein; SPTR: A8ZT42 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329)
YP_003808783.1	COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR003392:IPR000731; KEGG: dal:Dalk_0753 patched family protein; PFAM: patched family protein; SPTR: B8FHP1 patched family protein; PFAM: patched family; MMPL family
YP_003808784.1	InterPro IPR000835:IPR011991; KEGG: cac:CAC0559 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Q97LK1 Transcriptional regulator, MarR/EmrR family; PFAM: MarR family
YP_003808785.1	COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023:IPR012335:IPR012336; KEGG: adg:Adeg_0158 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: C9RAQ3 NADH dehydrogenase (Ubiquinone) 24 kDa subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit
YP_003808786.1	COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR011538:IPR019554:IPR019575:IPR001450:IPR 012335:IPR017896:IPR012336:IPR017900:IPR001949; KEGG: dal:Dalk_5089 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: NADH dehydrogenase (quinone); SPTR: B8FDX9 NADH dehydrogenase (Quinone); PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; 4Fe-4S binding domain; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain
YP_003808787.1	COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR001041:IPR001450:IPR017896:IPR017900; KEGG: dal:Dalk_5090 ferredoxin; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDY0 Ferredoxin
YP_003808788.1	COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR001450:IPR017896:IPR017900; KEGG: sfu:Sfum_3286 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LNF7 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_003808789.1	COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterProIPR006963:IPR006656:IPR006657:IPR009010:IPR 006655; KEGG: dvl:Dvul_2794 molybdopterin oxidoreductase; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; SPTR: Q1NQN8 formate dehydrogenase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain
YP_003808790.1	COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: dal:Dalk_2352 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; SPTR: B8FAV9 CheW protein; PFAM: CheW-like domain
YP_003808791.1	COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR013656:IPR002078:IPR002197:IPR 000014:IPR003593:IPR020441:IPR011006:IPR009057; KEGG: gsu:GSU2506 sensory box protein/sigma-54 dependent DNA-binding response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; PAS fold-4 domain protein; helix-turn-helix Fis-type; SMART: response regulator receiver; PAS domain containing protein; ATPase AAA; SPTR: Q74A84 Sensory box protein/sigma-54 dependent DNA-binding response regulator; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003808792.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR013767:IPR003661:IPR003594:IPR000014:IPR 005467:IPR004358:IPR009082; KEGG: gsu:GSU1038 sensory box histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: Q74EC5 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: PAS domain S-box
YP_003808793.1	COGs: COG1882 pyruvate-formate lyase; InterPro IPR004184; KEGG: dal:Dalk_4867 formate C-acetyltransferase; PFAM: pyruvate formate-lyase PFL; PRIAM: formate C-acetyltransferase; SPTR: B8FDB2 formate C-acetyltransferase; PFAM: pyruvate formate lyase
YP_003808794.1	InterPro IPR005358; KEGG: sfu:Sfum_1054 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: A0LH46 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)
YP_003808795.1	InterPro IPR005358; KEGG: adg:Adeg_1741 protein of unknown function UPF0153; PFAM: protein of unknown function UPF0153; SPTR: C9R951 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)
YP_003808796.1	COGs: COG1014 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit gamma; InterPro IPR019752:IPR002869; KEGG: sfu:Sfum_1168 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate/ketoisovalerate oxidoreductase; SPTR: A0LHF9 2-oxoglutarate ferredoxin oxidoreductase, subunit gamma; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase
YP_003808797.1	COGs: COG1013 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit beta; InterPro IPR011766; KEGG: sfu:Sfum_1167 2-oxoglutarate ferredoxin oxidoreductase subunit beta; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; PRIAM: 2-oxoglutarate synthase; SPTR: A0LHF8 2-oxoglutarate ferredoxin oxidoreductase, subunit beta; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_003808798.1	COGs: COG0674 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit alpha; InterPro IPR002880:IPR015941:IPR009014:IPR005829; KEGG: sfu:Sfum_1166 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SPTR: A0LHF7 2-oxoglutarate ferredoxin oxidoreductase, subunit alpha; PFAM: domain
YP_003808799.1	InterPro IPR001450:IPR017896:IPR017900; KEGG: sfu:Sfum_1165 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LHF6 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_003808800.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dde:Dde_3713 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q3IBN9 Reductase, iron-sulfur binding subunit containing response regulator receiver; PFAM: Response regulator receiver domain
YP_003808801.1	KEGG: sml:Smlt4056  penicillin-binding protein; SPTR: A3SQP5 K+-dependent Na+/Ca+ exchanger related-protein
YP_003808803.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR013767:IPR003594:IPR000014:IPR 001610:IPR005467:IPR000700:IPR004358; KEGG: aba:Acid345_0692 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: Q1ITV3 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box
YP_003808804.1	KEGG: tro:trd_1034 DNA repair protein RadA; SPTR: B9Y913 Putative uncharacterized protein
YP_003808805.1	COGs: COG2233 xanthine/uracil permease; InterPro IPR006043:IPR018062; KEGG: pth:PTH_2271 xanthine/uracil permeases; PFAM: xanthine/uracil/vitamin C permease; SPTR: A5CZY9 xanthine/uracil permeases; PFAM: Permease family; TIGRFAM: uracil-xanthine permease
YP_003808806.1	COGs: COG0787 Alanine racemase; InterProIPR001608:IPR011079:IPR000821:IPR009006:IPR 020622; KEGG: dal:Dalk_2210 alanine racemase; PFAM: alanine racemase domain protein; PRIAM: Alanine racemase; SPTR: B8FF86 Alanine racemase; TIGRFAM: alanine racemase; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase
YP_003808807.1	KEGG: sat:SYN_03024  cytoplasmic protein; SPTR: Q2LVV4 Hypothetical cytosolic protein
YP_003808808.1	COGs: COG0018 Arginyl-tRNA synthetase; InterProIPR005148:IPR015945:IPR008909:IPR014729:IPR 009080:IPR001412:IPR001278; KEGG: pca:Pcar_0742 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; DALR anticodon binding domain protein; PRIAM: Arginine--tRNA ligase; SPTR: Q3A6K6 Arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase
YP_003808809.1	InterPro IPR007730; KEGG: dol:Dole_3214 sporulation domain-containing protein; PFAM: Sporulation domain protein; SPTR: A9A098 Sporulation domain protein; PFAM: Sporulation related domain
YP_003808810.1	KEGG: dal:Dalk_0732 hypothetical protein; SPTR: B8FK09 Putative uncharacterized protein
YP_003808811.1	COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; InterPro IPR000182:IPR016181; KEGG: sfu:Sfum_1203 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: A0LHJ4 N-acetylglutamate synthase; PFAM: acetyltransferase (GNAT) family
YP_003808812.1	COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510:IPR008263; KEGG: gme:Gmet_0947 peptidase U62, modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: C6MMK6 peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase
YP_003808813.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR011055; KEGG: dol:Dole_2484 peptidase M23B; PFAM: peptidase M23; SPTR: A8ZW54 peptidase M23B; PFAM: peptidase family M23
YP_003808814.1	InterPro IPR000182:IPR016181; KEGG: ara:Arad_2662 acetyltransferase protein; PFAM: GCN5-related N-acetyltransferase; SPTR: B9JFW0 acetyltransferase protein; PFAM: acetyltransferase (GNAT) family
YP_003808815.1	COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); InterProIPR011115:IPR011130:IPR001650:IPR011116:IPR 004027:IPR014018:IPR000185; KEGG: sfu:Sfum_1202 preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; helicase domain protein; SecA Wing and Scaffold; SEC-C motif domain protein; SPTR: C8QWJ4 Preprotein translocase, SecA subunit; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit
YP_003808816.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dal:Dalk_3502 extracellular ligand-binding receptor; PFAM: extracellular ligand-binding receptor; SPTR: B8FBY5 extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region
YP_003808817.1	COGs: COG5427 Uncharacterized membrane protein; InterPro IPR018746; KEGG: cag:Cagg_2106 hypothetical protein; PFAM: YYY membrane protein; SPTR: B8GCE8 Putative uncharacterized protein; PFAM: Uncharacterized membrane protein (DUF2298); TIGRFAM: Chlor_Arch_YYY domain
YP_003808818.1	COGs: COG4745 membrane-bound mannosyltransferase; InterPro IPR019962; KEGG: tro:trd_1271 hypothetical protein; SPTR: B9L1L1 Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein TIGR03663
YP_003808819.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_5100 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C4D4T1 glycosyl transferase; PFAM: glycosyl transferase family 2
YP_003808820.1	COGs: COG1232 Protoporphyrinogen oxidase; InterPro IPR002937; KEGG: gsu:GSU1512 amine oxidase, flavin-containing; PFAM: amine oxidase; SPTR: Q74D07 Amine oxidase, flavin-containing; PFAM: Flavin containing amine oxidoreductase
YP_003808821.1	COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); InterPro IPR002813:IPR016117; KEGG: dal:Dalk_1420 arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; PRIAM: Amino-acid N-acetyltransferase; SPTR: B8FA24 Arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase
YP_003808822.1	COGs: COG1496 conserved hypothetical protein; InterPro IPR003730:IPR011324; KEGG: dol:Dole_2169 hypothetical protein; PFAM: protein of unknown function DUF152; SPTR: Q1NQ56 Putative uncharacterized protein; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: conserved hypothetical protein TIGR00726
YP_003808823.1	COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterProIPR008333:IPR001433:IPR019480:IPR012165:IPR 017927:IPR017938; KEGG: dps:DP3016 dihydroorotate dehydrogenase, electron transfer subunit; PFAM: dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; SPTR: Q1NN17 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain
YP_003808824.1	COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: dal:Dalk_0469 transglutaminase domain protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; SPTR: B8FH88 Transglutaminase domain protein; PFAM: Transglutaminase-like superfamily
YP_003808825.1	COGs: COG0167 dihydroorotate dehydrogenase; InterPro IPR012135:IPR013785:IPR001295:IPR005720; KEGG: gem:GM21_1820 dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase; SPTR: C6E6N2 dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein
YP_003808826.1	COGs: COG3276 Selenocysteine-specific translation elongation factor; InterProIPR000795:IPR004161:IPR015190:IPR015191:IPR 011991:IPR009000:IPR009001:IPR005225:IPR004535; KEGG: dal:Dalk_1105 selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; SPTR: B8F962 Selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; Elongation factor SelB, winged helix; TIGRFAM: selenocysteine-specific elongation factor SelB; small GTP-binding protein domain; translation elongation factor TU
YP_003808827.1	COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); InterPro IPR005227:IPR006641:IPR012337; KEGG: mta:Moth_1640 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; SPTR: Q2RHZ7 Putative Holliday junction resolvase; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: conserved hypothetical protein TIGR00250
YP_003808828.1	COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: dal:Dalk_3985 aminodeoxychorismate lyase; PFAM: aminodeoxychorismate lyase; SPTR: B8FJK2 Aminodeoxychorismate lyase; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein TIGR00247
YP_003808829.1	COGs: COG1309 Transcriptional regulator; InterProIPR001647:IPR013570:IPR012287:IPR015893:IPR 011075:IPR009057; KEGG: sfu:Sfum_1401 TetR family transcriptional regulator; PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YsiA domain protein; SPTR: C8QXS1 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family; YsiA-like protein, C-terminal region
YP_003808830.1	COGs: COG2086 electron transfer flavoprotein subunit beta; InterPro IPR014730:IPR012255:IPR014729; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit; PFAM: electron transfer flavoprotein alpha/beta-subunit; SPTR: Q2LWQ9 electron transfer flavoprotein beta-subunit; PFAM: electron transfer flavoprotein domain
YP_003808831.1	COGs: COG2025 electron transfer flavoprotein subunit alpha; InterProIPR014730:IPR014731:IPR001308:IPR014729:IPR 018206; KEGG: sat:SYN_02637 electron transfer flavoprotein alpha-subunit; PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein subunit alpha; SPTR: Q2LWR0 electron transfer flavoprotein alpha-subunit; PFAM: electron transfer flavoprotein domain; electron transfer flavoprotein FAD-binding domain
YP_003808832.1	InterProIPR001647:IPR012287:IPR015893:IPR009057:IPR 011075; KEGG: sfu:Sfum_1988 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: A0LJR9 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003808833.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: dhd:Dhaf_3798 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: B8FRQ4 Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold
YP_003808834.1	COGs: COG1443 Isopentenyldiphosphate isomerase; InterPro IPR000086:IPR015797:IPR020084; KEGG: ote:Oter_2376 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: C1ZKP1 Isopentenyldiphosphate isomerase; PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1
YP_003808835.1	KEGG: asa:ASA_0300 membrane carboxypeptidase; SPTR: A4SHW2 Membrane carboxypeptidase
YP_003808836.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753:IPR018376; KEGG: bpt:Bpet4719 enoyl-CoA hydratase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: A9IFN7 enoyl-CoA hydratase; PFAM: enoyl-CoA hydratase/isomerase family
YP_003808837.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: rpt:Rpal_1911 nitroreductase; PFAM: nitroreductase; SPTR: C3RWW2 Putative nitroreductase; PFAM: Nitroreductase family
YP_003808838.1	COGs: COG3379 conserved hypothetical protein; InterPro IPR002591:IPR017849:IPR017850; KEGG: chl:Chy400_1465 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: B9LCL3 Type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase
YP_003808839.1	COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterProIPR001915:IPR001440:IPR019734:IPR011990:IPR 013026; KEGG: dps:DP0525 hypothetical protein; PFAM: peptidase M48 Ste24p; hypothetical protein; SMART: Tetratricopeptide repeat; SPTR: C8R0Y9 peptidase M48 Ste24p; PFAM: peptidase family M48
YP_003808840.1	InterPro IPR003369:IPR006312; KEGG: dat:HRM2_06850 TatA; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: C0QJ09 Sec-independent protein translocase protein tatA/E homolog; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family
YP_003808841.1	KEGG: sfu:Sfum_1591 hypothetical protein; SPTR: A0LIM6 Putative uncharacterized protein
YP_003808842.1	COGs: COG1406 inhibitor of MCP methylation homolog of CheC; KEGG: sat:SYN_00961  inhibitor of MCP methylation; SPTR: Q2LSM0 Putative inhibitor of MCP methylation
YP_003808843.1	COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterProIPR001754:IPR013785:IPR011060:IPR018089:IPR 014732; KEGG: rle:RL0331 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: B8FJ93 Orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 1
YP_003808844.1	COGs: COG2003 DNA repair protein; InterPro IPR001405; KEGG: dol:Dole_0675 DNA repair protein RadC; PFAM: DNA repair protein RadC; SPTR: A8ZUS2 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc
YP_003808845.1	COGs: COG1180 pyruvate-formate lyase-activating enzyme; InterPro IPR007197:IPR016431; KEGG: dma:DMR_15300 hypothetical protein; PFAM: radical SAM domain protein; SPTR: C4XNP6 Putative uncharacterized protein; PFAM: radical SAM superfamily
YP_003808846.1	COGs: COG3063 Tfp pilus assembly protein PilF; InterProIPR001440:IPR013105:IPR001789:IPR019734:IPR 011990:IPR013026:IPR011006; KEGG: cyp:PCC8801_1300 hypothetical protein; PFAM: hypothetical protein; hypothetical protein; SMART: response regulator receiver; Tetratricopeptide repeat; SPTR: Q4CAF1 TPR repeat:Sel1-like repeat:Sel1-like repeat; PFAM: Response regulator receiver domain; Tetratricopeptide repeat
YP_003808847.1	KEGG: dma:DMR_04640 hypothetical protein; SPTR: C4XHZ3 Putative uncharacterized protein
YP_003808848.1	InterPro IPR000421:IPR008979; KEGG: saq:Sare_1697 hypothetical protein; SPTR: A8LWR4 Putative uncharacterized protein
YP_003808849.1	InterPro IPR000421:IPR008979; KEGG: sti:Sthe_1389 hypothetical protein; SPTR: D1C3K7 Putative uncharacterized protein
YP_003808850.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cyc:PCC7424_2557 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: A0YU19 glycosyltransferase involved in cell wall biogenesis-like protein; PFAM: glycosyl transferase family 2
YP_003808851.1	InterPro IPR018062:IPR005242; KEGG: amr:AM1_1029 hypothetical protein; SPTR: B5VUR7 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_003808852.1	KEGG: amr:AM1_1028 hypothetical protein; SPTR: A0YKG9 Putative uncharacterized protein
YP_003808853.1	KEGG: dvm:DvMF_0342 hypothetical protein; SPTR: B8DPL2 Putative uncharacterized protein
YP_003808854.1	COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterProIPR007197:IPR010505:IPR006638:IPR013785:IPR 000385:IPR013483; KEGG: pca:Pcar_2768 molybdopterin biosynthesis, protein A; PFAM: molybdenum cofactor synthesis domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q3A0V4 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum Cofactor Synthesis C; radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial
YP_003808855.1	InterPro IPR018961; KEGG: sfu:Sfum_2138 hypothetical protein; PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; SPTR: A0LK68 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1992)
YP_003808856.1	KEGG: cag:Cagg_0661 alpha/beta hydrolase fold-containing protein; SPTR: B8G4W3 Alpha/beta hydrolase fold-containing protein
YP_003808857.1	COGs: COG0203 ribosomal protein L17; InterPro IPR000456; KEGG: dps:DP1153 50S ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: Q6AP42 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; TIGRFAM: ribosomal protein L17
YP_003808858.1	COGs: COG0202 DNA-directed RNA polymerase subunit alpha/40 kD subunit; InterProIPR011261:IPR011262:IPR011260:IPR011263:IPR 009025:IPR011773; KEGG: sfu:Sfum_1582 DNA-directed RNA polymerase subunit alpha; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase subunit alpha domain protein; SMART: RNA polymerase RpoA/D/Rpb3-type; SPTR: A0LIL7 DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, subunit alpha; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, subunit alpha, bacterial and chloroplast-type
YP_003808859.1	COGs: COG0522 ribosomal protein S4 and related protein; InterPro IPR001912:IPR002942:IPR005709; KEGG: dal:Dalk_1890 ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; SMART: RNA-binding S4 domain protein; SPTR: B8FER0 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type
YP_003808860.1	COGs: COG0100 ribosomal protein S11; InterPro IPR001971:IPR018102:IPR019981; KEGG: pca:Pcar_0726 30S ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: Q3A6M2 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11
YP_003808861.1	COGs: COG0099 ribosomal protein S13; InterPro IPR001892:IPR010979:IPR018269:IPR019980; KEGG: sfu:Sfum_1579 30S ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: A0LIL4 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13
YP_003808862.1	InterPro IPR000473; KEGG: amc:MADE_00959 50S ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: B0VI08 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; manually curated; PFAM: ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type
YP_003808863.1	COGs: COG0024 Methionine aminopeptidase; InterPro IPR000994:IPR001714:IPR002467; KEGG: dal:Dalk_1894 methionine aminopeptidase, type I; PFAM: peptidase M24; SPTR: B8FER4 Methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I
YP_003808864.1	COGs: COG0563 Adenylate kinase and related kinase; InterPro IPR000850:IPR007862:IPR006259; KEGG: sfu:Sfum_1576 adenylate kinases; PFAM: adenylate kinase; adenylate kinase lid domain protein; SPTR: A0LIL1 Adenylate kinase; TIGRFAM: adenylate kinase; PFAM: Adenylate kinase, active site lid; Adenylate kinase; TIGRFAM: adenylate kinases
YP_003808865.1	COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: dat:HRM2_36060 SecY; PFAM: SecY protein; SPTR: C0Q9V3 Preprotein translocase subunit secY; TIGRFAM: preprotein translocase, SecY subunit; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit
YP_003808866.1	COGs: COG0200 ribosomal protein L15; InterPro IPR001196:IPR005749; KEGG: pca:Pcar_0720 ribosomal protein L15; PFAM: ribosomal protein L15; SPTR: C0E8M4 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle
YP_003808867.1	COGs: COG1841 ribosomal protein L30/L7E; InterPro IPR000517:IPR005996:IPR016082; KEGG: hoh:Hoch_3987 ribosomal protein L30; PFAM: ribosomal protein L30; SPTR: D0LIA7 ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle
YP_003808868.1	COGs: COG0098 ribosomal protein S5; InterProIPR013810:IPR005324:IPR014720:IPR014721:IPR 020568:IPR018192:IPR005712; KEGG: dat:HRM2_36090 RpsE; PFAM: ribosomal protein S5 ; ribosomal protein S5 domain protein; SPTR: C0Q9V6 RpsE; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5, C-terminal domain; ribosomal protein S5, N-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type
YP_003808869.1	COGs: COG0256 ribosomal protein L18; InterPro IPR005484:IPR004389; KEGG: glo:Glov_1362 ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; SPTR: B3E846 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type
YP_003808870.1	COGs: COG0097 ribosomal protein L6P/L9E; InterPro IPR020040:IPR000702:IPR019906:IPR002358; KEGG: dal:Dalk_1900 ribosomal protein L6 signature 1; PFAM: ribosomal protein L6, alpha-beta domain; SPTR: C5JBA3 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type
YP_003808871.1	COGs: COG0096 ribosomal protein S8; InterPro IPR000630; KEGG: pen:PSEEN0504 30S ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: Q1IFV2 30S ribosomal protein S8; PFAM: ribosomal protein S8
YP_003808872.1	COGs: COG0199 ribosomal protein S14; InterPro IPR001209:IPR018271; KEGG: sfu:Sfum_1568 ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: A0LIK3 30S ribosomal protein S14 type Z; PFAM: ribosomal protein S14p/S29e
YP_003808873.1	COGs: COG0094 ribosomal protein L5; InterPro IPR002132; KEGG: adg:Adeg_1512 ribosomal protein L5; PFAM: ribosomal protein L5; SPTR: C9R8H8 ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; ribosomal protein L5
YP_003808874.1	COGs: COG0198 ribosomal protein L24; InterPro IPR005824:IPR008991:IPR003256; KEGG: chy:CHY_2298 50S ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; SPTR: Q3A9S7 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle
YP_003808875.1	COGs: COG0093 ribosomal protein L14; InterPro IPR000218:IPR019972:IPR005745; KEGG: sfu:Sfum_1565 ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: A0LIK0 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle
YP_003808876.1	COGs: COG0186 ribosomal protein S17; InterProIPR000266:IPR012340:IPR016027:IPR019979:IPR 019984; KEGG: dma:DMR_12290 30S ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: Q1JVD9 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17
YP_003808877.1	InterPro IPR001854:IPR018254; KEGG: pca:Pcar_0709 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: A7VR45 Putative uncharacterized protein; TIGRFAM: ribosomal protein L29; PFAM: ribosomal L29 protein; TIGRFAM: ribosomal protein L29
YP_003808878.1	COGs: COG0197 ribosomal protein L16/L10E; InterPro IPR016180:IPR000114:IPR020798; KEGG: dal:Dalk_1908 50S ribosomal protein L16; PFAM: ribosomal protein L10e/L16; SPTR: B8FES8 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; manually curated; PFAM: ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle
YP_003808879.1	COGs: COG0092 ribosomal protein S3; InterProIPR008282:IPR004044:IPR001351:IPR004087:IPR 015946:IPR009019:IPR018280:IPR005704; KEGG: gem:GM21_3322 ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; ribosomal protein S3 domain; KH type 2 domain protein; SMART: KH domain protein; SPTR: C6E4Q1 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: KH domain; ribosomal protein S3, C-terminal domain; ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type
YP_003808880.1	COGs: COG0091 ribosomal protein L22; InterPro IPR001063:IPR018260:IPR005727; KEGG: dps:DP1129 50S ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: Q6AP66 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type
YP_003808881.1	COGs: COG0185 ribosomal protein S19; InterPro IPR002222:IPR005732; KEGG: dps:DP1128 30S ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: Q6AP67 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle
YP_003808882.1	COGs: COG0090 ribosomal protein L2; InterProIPR002171:IPR012340:IPR014722:IPR008991:IPR 016027:IPR005880; KEGG: dal:Dalk_1912 50S ribosomal protein L2; PFAM: ribosomal protein L2; SPTR: Q1NPK1 ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal Proteins L2, RNA binding domain; ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar
YP_003808883.1	COGs: COG0089 ribosomal protein L23; InterPro IPR013025:IPR012677:IPR012678:IPR001014; KEGG: dal:Dalk_1913 ribosomal protein L25/L23; PFAM: ribosomal protein L25/L23; SPTR: B8FET3 50S ribosomal protein L23; PFAM: ribosomal protein L23
YP_003808884.1	COGs: COG0088 ribosomal protein L4; InterPro IPR002136; KEGG: sfu:Sfum_1556 ribosomal protein L4/L1e; PFAM: ribosomal protein L4/L1e; SPTR: A0LIJ1 50S ribosomal protein L4; PFAM: ribosomal protein L4/L1 family
YP_003808885.1	COGs: COG0087 ribosomal protein L3; InterPro IPR000597:IPR009000:IPR019926:IPR019927; KEGG: dal:Dalk_1915 ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: B8FET5 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial
YP_003808886.1	COGs: COG0051 ribosomal protein S10; InterPro IPR001848:IPR018268:IPR005731; KEGG: bba:Bd2978 30S ribosomal protein S10; PFAM: ribosomal protein S10; SPTR: Q6MJ14 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle
YP_003808887.1	COGs: COG0050 GTPase - translation elongation factors; InterProIPR000795:IPR004161:IPR004160:IPR009001:IPR 009000:IPR004541:IPR005225; KEGG: dal:Dalk_1928 elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain protein; SPTR: B8FET7 Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_003808888.1	COGs: COG0480 Translation elongation factors (GTPase); InterProIPR000795:IPR004161:IPR005517:IPR000640:IPR 014721:IPR020568:IPR009000:IPR009022:IPR004540:IPR005225; KEGG: gur:Gura_1065 elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein; SPTR: Q1JVC8 Translation elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_003808889.1	COGs: COG0049 ribosomal protein S7; InterPro IPR000235:IPR005717; KEGG: pca:Pcar_0697 30S ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: Q3A6Q1 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle
YP_003808890.1	COGs: COG0048 ribosomal protein S12; InterPro IPR006032:IPR012340:IPR005679:IPR016027; KEGG: sfu:Sfum_1551 30S ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: A0LII6 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle
YP_003808891.1	COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; InterProIPR007080:IPR000722:IPR007066:IPR007083:IPR 007081:IPR006592:IPR012754; KEGG: sfu:Sfum_1550 DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; SMART: RNA polymerase I subunit A domain protein; SPTR: A0LII5 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form
YP_003808892.1	COGs: COG0085 DNA-directed RNA polymerase subunit beta/140 kD subunit; InterProIPR007644:IPR007642:IPR007645:IPR019462:IPR 007120:IPR007641:IPR007121:IPR010243; KEGG: sfu:Sfum_1549 DNA-directed RNA polymerase, subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase subunit beta; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, subunit beta, external 1 domain; RNA polymerase Rpb2 domain 7; SPTR: A0LII4 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, subunit beta; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase subunit beta external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase subunit beta; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, subunit beta
YP_003808893.1	COGs: COG0222 ribosomal protein L7/L12; InterPro IPR013823:IPR014719:IPR008932:IPR000206; KEGG: gsu:GSU2864 50S ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12; SPTR: Q1JXF2 ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12
YP_003808894.1	COGs: COG0244 ribosomal protein L10; InterPro IPR001790; KEGG: dol:Dole_0700 ribosomal protein L10; PFAM: ribosomal protein L10; SPTR: A8ZUU7 50S ribosomal protein L10; PFAM: ribosomal protein L10
YP_003808895.1	COGs: COG0081 ribosomal protein L1; InterPro IPR002143:IPR016094:IPR005878; KEGG: dal:Dalk_1924 ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: B8FEU4 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast
YP_003808896.1	COGs: COG0080 ribosomal protein L11; InterPro IPR020784:IPR020783:IPR000911:IPR006519; KEGG: sfu:Sfum_1545 ribosomal protein L11; PFAM: ribosomal protein L11-like; SMART: ribosomal protein L11; SPTR: A0LII0 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11, RNA binding domain; ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11
YP_003808897.1	COGs: COG0250 Transcription antiterminator; InterProIPR006645:IPR005824:IPR014722:IPR001062:IPR 008991:IPR015869; KEGG: sfu:Sfum_1544 NusG antitermination factor; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein; SPTR: A0LIH9 Transcription antitermination protein nusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG
YP_003808898.1	InterPro IPR001901:IPR005807; KEGG: sfu:Sfum_1543 preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; SPTR: A0LIH8 Protein translocase subunit secE/sec61 gamma; TIGRFAM: preprotein translocase, SecE subunit; PFAM: SecE/Sec61-subunit gammas of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial
YP_003808899.1	InterPro IPR001705:IPR018264; KEGG: gem:GM21_3342 ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: C6E4S1 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type
YP_003808900.1	COGs: COG0050 GTPase - translation elongation factors; InterProIPR000795:IPR004161:IPR004160:IPR009001:IPR 009000:IPR004541:IPR005225; KEGG: dal:Dalk_1928 elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain protein; SPTR: B8FET7 Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_003808901.1	COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterPro IPR013093:IPR003593; KEGG: sfu:Sfum_3055 ATPase; PFAM: ATPase AAA-2 domain protein; SMART: ATPase AAA; SPTR: A0LMS7 ATPase AAA-2 domain protein; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX)
YP_003808902.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197:IPR017200:IPR006638; KEGG: sfu:Sfum_3056 radical SAM domain-containing protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: A0LMS8 radical SAM domain protein; PFAM: radical SAM superfamily
YP_003808903.1	COGs: COG4725 Transcriptional activator adenine-specific DNA methyltransferase; InterPro IPR007757:IPR002052; KEGG: rde:RD1_1079 DNA methyltransferase; PFAM: MT-A70 family protein; SPTR: C8S3H4 MT-A70 family protein; PFAM: MT-A70
YP_003808904.1	InterPro IPR015278; KEGG: ajs:Ajs_0427 hypothetical protein; PFAM: restriction endonuclease BglII; SPTR: C8R2M4 restriction endonuclease BglII; PFAM: restriction endonuclease BglII
YP_003808905.1	COGs: COG0113 delta-aminolevulinic acid dehydratase; InterPro IPR001731:IPR013785; KEGG: dol:Dole_1224 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; PRIAM: porphobilinogen synthase; SPTR: A8ZY23 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase
YP_003808906.1	COGs: COG0012 GTPase probable translation factor; InterPro IPR013029:IPR004396:IPR012675:IPR012676; KEGG: dol:Dole_0142 hypothetical protein; PFAM: Protein of unknown function DUF933; SPTR: A8ZSN9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF
YP_003808907.1	COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: dde:Dde_2418 MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: Q30YN1 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM:  efflux protein, MATE family
YP_003808908.1	COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR001638:IPR013656:IPR013767:IPR000160:IPR 001633:IPR000014:IPR001610:IPR000700; KEGG: mei:Msip34_1854 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS domain containing protein; PAC repeat-containing protein; SPTR: C6X6V4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain; GGDEF domain; PAS fold; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain
YP_003808909.1	COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: hap:HAPS_0507 multiple antibiotic resistance (MarC)-related protein; PFAM: multiple antibiotic resistance (MarC)-related protein; SPTR: A3VDE1 Putative uncharacterized protein; PFAM: MarC family integral membrane protein; TIGRFAM: conserved hypothetical protein TIGR00427
YP_003808910.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003594:IPR005467:IPR004358:IPR009082; KEGG: dal:Dalk_2245 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: B8FIE8 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_003808911.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2244 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FIE7 Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_003808913.1	COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR001898; KEGG: dat:HRM2_38270 NadC2; PFAM: sodium/sulphate symporter; SPTR: C0QAV2 NadC2; PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter
YP_003808914.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR000644:IPR011006; KEGG: dol:Dole_1341 response regulator receiver protein; PFAM: response regulator receiver; CBS domain containing protein; SMART: response regulator receiver; CBS domain containing protein; SPTR: A8ZYP0 Response regulator receiver protein; PFAM: CBS domain; Response regulator receiver domain
YP_003808915.1	KEGG: maq:Maqu_0130 hypothetical protein; SPTR: A1TWW8 Putative uncharacterized protein
YP_003808916.1	KEGG: bcv:Bcav_3932 hypothetical protein; SPTR: C5C533 Putative uncharacterized protein
YP_003808917.1	KEGG: paa:Paes_0942 hypothetical protein; SPTR: A7BSE9 Putative uncharacterized protein
YP_003808918.1	InterPro IPR001450:IPR017896:IPR017900; KEGG: dol:Dole_2064 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A8ZTT5 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain
YP_003808919.1	COGs: COG2041 Sulfite oxidase; InterPro IPR000572:IPR017909:IPR006311; KEGG: mmb:Mmol_0534 oxidoreductase molybdopterin binding; PFAM: oxidoreductase molybdopterin binding; SPTR: C6WU45 Oxidoreductase molybdopterin binding; PFAM: Oxidoreductase molybdopterin binding domain
YP_003808920.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647:IPR012287:IPR009057:IPR011075; KEGG: dal:Dalk_1395 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8F9Z9 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003808921.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: dal:Dalk_1396 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: B8FA00 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003808922.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR016196; KEGG: mei:Msip34_1770 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C6X6M2 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily
YP_003808923.1	COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterProIPR013154:IPR013149:IPR011032:IPR016040:IPR 002328:IPR000169; KEGG: rec:RHECIAT_CH0003132 probable L-iditol 2-dehydrogenase protein; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; SPTR: B7RXG2 alcohol dehydrogenase GroES-like domain family; PFAM: alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_003808924.1	COGs: COG3199 conserved hypothetical protein; InterPro IPR002504; KEGG: tro:trd_1495 acetoin catabolism protein X; PFAM: ATP-NAD/AcoX kinase; SPTR: B9KZM5 Acetoin catabolism protein X; PFAM: ATP-NAD kinase
YP_003808925.1	COGs: COG1071 pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type subunit alpha; InterPro IPR001017:IPR018370; KEGG: rxy:Rxyl_0348 pyruvate dehydrogenase (lipoamide); PFAM: dehydrogenase E1 component; SPTR: B7S016 Dehydrogenase E1 component superfamily protein; PFAM: Dehydrogenase E1 component
YP_003808926.1	COGs: COG0022 pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type subunit beta; InterProIPR005475:IPR005476:IPR015941:IPR009014:IPR 013838; KEGG: sso:SSO1526 pyruvate dehydrogenase subunit beta (lipoamide); PFAM: transketolase; transketolase; SPTR: B7S015 Transketolase, C-terminal domain protein; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_003808927.1	COGs: COG0508 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterProIPR000089:IPR004167:IPR001078:IPR011053:IPR 003016; KEGG: rha:RHA1_ro11029 dihydrolipoyllysine-residue succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; biotin/lipoyl attachment domain-containing protein; SPTR: Q0RVL0 Dihydrolipoyllysine-residue succinyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme
YP_003808928.1	COGs: COG1249 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR013027:IPR004099:IPR000815:IPR016156:IPR 012999:IPR006258; KEGG: mta:Moth_1763 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: A1HU83 Dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase
YP_003808929.1	COGs: COG0320 Lipoate synthase; InterProIPR004143:IPR007197:IPR006638:IPR013785:IPR 000544:IPR003698; KEGG: mta:Moth_1762 lipoyl synthase; PFAM: radical SAM domain protein; biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase., Lipoyl synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q2RHM6 Lipoyl synthase; TIGRFAM: lipoic acid synthetase; lipoate-protein ligase B; PFAM: radical SAM superfamily; Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B; lipoate synthase
YP_003808930.1	InterPro IPR011031; KEGG: sat:SYN_02638 iron-sulphur-binding reductase; SPTR: C8QXC7 cytochrome C family protein; TIGRFAM: doubled CXXCH domain
YP_003808931.1	COGs: COG0509 glycine cleavage system H protein (lipoate-binding); InterPro IPR002930:IPR011053:IPR003016:IPR017453; KEGG: mta:Moth_0438 glycine cleavage system H protein; PFAM: glycine cleavage H-protein; SPTR: Q2RLC0 glycine cleavage system H protein; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein
YP_003808932.1	COGs: COG0247 Fe-S oxidoreductase; InterProIPR001450:IPR004017:IPR012285:IPR017896:IPR 009051:IPR017900; KEGG: mac:MA0688 heterodisulfide reductase, subunit D; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Q8TSV7 CoB--CoM heterodisulfide reductase 2 iron-sulfur subunit D; PFAM: Cysteine-rich domain
YP_003808933.1	COGs: COG0095 Lipoate-protein ligase A; InterPro IPR004143:IPR000923; KEGG: tro:trd_0142 hypothetical protein; PFAM: biotin/lipoate A/B protein ligase; SPTR: A8UQP5 Putative uncharacterized protein; PFAM: Bacterial lipoate protein ligase C-terminus; Biotin/lipoate A/B protein ligase family
YP_003808934.1	COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733:IPR013785; KEGG: cts:Ctha_2042 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; SPTR: B3QUZ3 Thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase
YP_003808935.1	COGs: COG2145 hydroxyethylthiazole kinase sugar kinase family; InterPro IPR000417:IPR011144:IPR002132; KEGG: dba:Dbac_0930 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase; PRIAM: hydroxyethylthiazole kinase; SPTR: C7LPK2 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase family; TIGRFAM: hydroxyethylthiazole kinase
YP_003808936.1	COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: sfu:Sfum_0739 peptidase M1, membrane alanine aminopeptidase; PFAM: peptidase M1 membrane alanine aminopeptidase; SPTR: A0LG85 peptidase M1, membrane alanine aminopeptidase; PFAM: Domain of unknown function (DUF3458); peptidase family M1
YP_003808937.1	KEGG: gur:Gura_3066 cache type 2 domain-containing protein; SPTR: A5G619 Cache, type 2 domain protein
YP_003808938.1	COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869:IPR016040; KEGG: ppd:Ppro_3385 polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein CapD; SPTR: A1AUF7 polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein
YP_003808939.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: swo:Swol_0731 glycosyl transferase, group 4 family protein; PFAM: glycosyl transferase, family 4, conserved region; SPTR: Q0AZ00 glycosyl transferase, group 4 family protein; PFAM: glycosyl transferase family 4
YP_003808940.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dba:Dbac_1782 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: C7LW55 Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_003808941.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dba:Dbac_1783 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: C7LW56 Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_003808942.1	COGs: COG1775 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: dol:Dole_0931 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; PRIAM: benzoyl-CoA reductase; SPTR: A8ZWD3 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component
YP_003808943.1	COGs: COG1775 benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: dol:Dole_0930 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; SPTR: A8ZWD2 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component
YP_003808944.1	COGs: COG1651 protein-disulfide isomerase; InterPro IPR001853:IPR012335:IPR012336; KEGG: dma:DMR_06250 DsbA oxidoreductase family protein; PFAM: DSBA oxidoreductase; SPTR: C4XIV2 DSBA oxidoreductase family protein
YP_003808945.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR013656:IPR003594:IPR000014:IPR005467; KEGG: hmo:HM1_1630 sensor histidine kinase, PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; SPTR: B0TE05 Sensor histidine kinase, PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold
YP_003808946.1	COGs: COG3246 conserved hypothetical protein; InterPro IPR008567; KEGG: ppw:PputW619_4531 hypothetical protein; PFAM: protein of unknown function DUF849; SPTR: B1JF47 Putative uncharacterized protein; PFAM: Prokaryotic protein of unknown function (DUF849)
YP_003808947.1	InterPro IPR006674:IPR003607:IPR006675; KEGG: dal:Dalk_2340 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: B8FAU7 Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG
YP_003808948.1	COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and subunit betas; InterPro IPR006067:IPR001450:IPR017896:IPR017900; KEGG: dal:Dalk_2339 nitrite and sulphite reductase 4Fe-4S region; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; SPTR: B8FAU6 Nitrite and sulphite reductase 4Fe-4S region; PFAM: 4Fe-4S binding domain; Nitrite and sulphite reductase 4Fe-4S domain
YP_003808949.1	InterPro IPR001450:IPR017896; KEGG: dal:Dalk_2338 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FAU5 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_003808950.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: tai:Taci_1748 transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; SPTR: D1B7H1 Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator)
YP_003808951.1	COGs: COG1359 conserved hypothetical protein; InterPro IPR007138:IPR011008; KEGG: ppd:Ppro_0311 antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: A1AKS5 Antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase
YP_003808952.1	KEGG: hypothetical protein LOC607637; SPTR: Q6H5R0 Putative uncharacterized protein OJ1031_C12.24
YP_003808953.1	KEGG: dps:DP2299 hypothetical protein; SPTR: Q6AKU7 Putative uncharacterized protein
YP_003808954.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004090:IPR016160; KEGG: dal:Dalk_4960 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8FHJ1 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003808955.1	COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR007065; KEGG: dat:HRM2_48550 hypothetical protein; PFAM: HPP family protein; SPTR: C8QZN8 HPP family protein; PFAM: HPP family
YP_003808956.1	COGs: COG4623 soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; InterPro IPR001638:IPR008258; KEGG: kpu:KP1_0303  periplasmic binding protein of transport system; PFAM: Lytic transglycosylase catalytic; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C4X0Y0 Putative periplasmic binding protein of transport system; PFAM: Transglycosylase SLT domain; Bacterial extracellular solute-binding proteins, family 3
YP_003808957.1	COGs: COG1217 membrane GTPase involved in stress response; InterProIPR000795:IPR004161:IPR000640:IPR009000:IPR 009022:IPR005225:IPR006298; KEGG: sfu:Sfum_2868 GTP-binding protein TypA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; SPTR: A0LM93 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain
YP_003808958.1	InterPro IPR019734:IPR011990:IPR013026; KEGG: pmf:P9303_24101 hypothetical protein; SPTR: A2CCD3 Putative uncharacterized protein
YP_003808959.1	COGs: COG0578 glycerol-3-phosphate dehydrogenase; InterPro IPR006076:IPR000447; KEGG: lbf:LBF_0724 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; PRIAM: glycerol-3-phosphate dehydrogenase; SPTR: B0SL72 Putative glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase
YP_003808960.1	COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR006175:IPR013813:IPR006056; KEGG: pca:Pcar_1288 YjgF family translation initiation inhibitor; PFAM: Endoribonuclease L-PSP; SPTR: Q3A520 Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP
YP_003808961.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR006092:IPR006091:IPR006090:IPR013786:IPR 013764:IPR009100:IPR009075:IPR006089; KEGG: scl:sce3575 butyryl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: A9GS62 butyryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003808962.1	InterPro IPR000326:IPR016118; KEGG: mem:Memar_0499 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: A3CST2 phosphoesterase, PA-phosphatase related; PFAM: PAP2 superfamily
YP_003808963.1	COGs: COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; InterPro IPR005546:IPR006315; KEGG: azc:AZC_0117 outer membrane autotransporter barrel precursor; PFAM: Autotransporter beta- domain protein; SPTR: A8IGP6 Outer membrane autotransporter barrel; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta-domain; TIGRFAM: outer membrane autotransporter barrel domain
YP_003808966.1	InterPro IPR000551:IPR009061; KEGG: maq:Maqu_2054 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: A1U2B6 Transcriptional regulator, MerR family; manually curated
YP_003808967.1	KEGG: GD20221 gene product from transcript GD20221-RA; SPTR: Q4AEI8 Fructan:fructan 1-fructosyltransferase
YP_003808968.1	COGs: COG1242 Fe-S oxidoreductase; InterPro IPR007197:IPR006638; KEGG: gsu:GSU0367 radical SAM family protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q74G80 radical SAM protein, TIGR01212 family; PFAM: radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family
YP_003808969.1	COGs: COG0350 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048:IPR011991; KEGG: sgr:SGR_1200  methylated-DNA--protein-cysteine S-methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: B1VV45 Putative methylated-DNA--protein-cysteine S-methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase
YP_003808970.1	COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: geo:Geob_2071 NADPH-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase; SPTR: B9M8T0 NADPH-dependent FMN reductase; PFAM: Flavodoxin-like fold
YP_003808971.1	COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR004477:IPR004797; KEGG: dal:Dalk_2782 DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; SPTR: B8FKV2 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2
YP_003808972.1	COGs: COG0189 Glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651:IPR011761; KEGG: dal:Dalk_1563 RimK domain protein ATP-grasp; PFAM: RimK domain protein ATP-grasp; SPTR: C8R0E0 RimK domain protein ATP-grasp; PFAM: RimK-like ATP-grasp domain
YP_003808973.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dal:Dalk_1295 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: B8F9Q2 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family
YP_003808974.1	KEGG: sat:SYN_02451  cytoplasmic protein; SPTR: Q2LR81 Hypothetical cytosolic protein
YP_003808975.1	KEGG: dat:HRM2_34640 hypothetical protein; SPTR: C0Q934 Putative uncharacterized protein
YP_003808976.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR016032:IPR000792:IPR000700:IPR011991; KEGG: dal:Dalk_3421 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: B8FLG3 Transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family
YP_003808977.1	KEGG: FAP262; flagellar associated protein; SPTR: A8IFL6 flagellar associated protein
YP_003808978.1	KEGG: gvi:glr2966 hypothetical protein; SPTR: Q7NCL2 Glr2966 protein
YP_003808979.1	KEGG: ter:Tery_1189 hypothetical protein; SPTR: Q116M7 Putative uncharacterized protein
YP_003808980.1	KEGG: sro:Sros_9246 major facilitator superfamily MFS_1; SPTR: C2SUC1 Major facilitator superfamily MFS_1
YP_003808981.1	KEGG: ADRB1; adrenergic, beta-1-, receptor; K04141 adrenergic receptor, beta 1; SPTR: B5W707 Putative uncharacterized protein
YP_003808982.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089; KEGG: pca:Pcar_1355  methyl-accepting chemotaxis protein (MCP); PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Q1JZ62 methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003808983.1	COGs: COG2516 Biotin synthase-related protein; InterPro IPR007197:IPR013785:IPR006638; KEGG: mta:Moth_0445 radical SAM family protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q2RLB3 radical SAM; PFAM: radical SAM superfamily
YP_003808984.1	COGs: COG1856 Uncharacterized homolog of biotin synthetase; InterPro IPR007197:IPR013785:IPR006638; KEGG: mta:Moth_0446 radical SAM family protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q2RLB2 radical SAM
YP_003808985.1	COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR008671:IPR003042; KEGG: afr:AFE_2544 geranylgeranyl reductase family protein; PFAM: lycopene beta and epsilon cyclase; SPTR: B7J778 Geranylgeranyl reductase family protein; PFAM: HI0933-like protein
YP_003808986.1	COGs: COG0095 Lipoate-protein ligase A; InterPro IPR004143:IPR002829; KEGG: mta:Moth_0443 biotin/lipoate A/B protein ligase; PFAM: biotin/lipoate A/B protein ligase; protein of unknown function DUF116; SPTR: Q2RLB5 Biotin/lipoate A/B protein ligase; PFAM: Protein of unknown function DUF116; Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoyltransferase and lipoate-protein ligase
YP_003808987.1	COGs: COG0509 glycine cleavage system H protein (lipoate-binding); InterPro IPR011053:IPR002930:IPR003016; KEGG: mta:Moth_0438 glycine cleavage system H protein; PFAM: glycine cleavage H-protein; SPTR: Q2RLC0 glycine cleavage system H protein; PFAM: glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein
YP_003808988.1	COGs: COG0076 glutamate decarboxylase and related PLP-dependent protein; InterPro IPR015424:IPR002129:IPR015421; KEGG: dal:Dalk_0154 pyridoxal-dependent decarboxylase; PFAM: pyridoxal-dependent decarboxylase; SPTR: B8FMJ7 pyridoxal-dependent decarboxylase; PFAM: pyridoxal-dependent decarboxylase conserved domain
YP_003808989.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004090; KEGG: sat:SYN_00971 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Q2LSK6 methyl-accepting chemotaxis protein; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003808990.1	InterPro IPR009875; KEGG: sat:SYN_02698  cytoplasmic protein; PFAM: type IV pilus assembly PilZ; SPTR: Q2LWK0 Hypothetical cytosolic protein; PFAM: PilZ domain
YP_003808991.1	InterPro IPR017941; KEGG: dal:Dalk_0333 Rieske (2Fe-2S) domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: B8F910 Rieske (2Fe-2S) domain protein; PFAM: Rieske [2Fe-2S] domain
YP_003808992.1	KEGG: rpc:RPC_0065 OmpA/MotB; SPTR: Q21D92 OmpA/MotB
YP_003808993.1	KEGG: sus:Acid_0623 FkbM family methyltransferase; SPTR: Q02BD8 methyltransferase FkbM family
YP_003808994.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089:IPR004090; KEGG: dal:Dalk_0574 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8FHJ1 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003808995.1	KEGG: cyc:PCC7424_4025 hypothetical protein; SPTR: B7KL27 Putative uncharacterized protein
YP_003808996.1	COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667:IPR012338; KEGG: mac:MA1969 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; PRIAM: serine-type D-Ala-D-Ala carboxypeptidase; SPTR: Q8TPE4 serine-type D-Ala-D-Ala carboxypeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
YP_003808997.1	InterPro IPR011051:IPR010982:IPR001387:IPR013096; KEGG: drt:Dret_1668 transcriptional regulator, XRE family; PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C8X3F5 Transcriptional regulator, XRE family; PFAM: Cupin domain; Helix-turn-helix
YP_003808998.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_3272 AMP-binding domain protein; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FJ35 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003808999.1	KEGG: pph:Ppha_0360  PAS/PAC sensor protein; SPTR: B4SCA9 Putative PAS/PAC sensor protein
YP_003809000.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR000014:IPR003594:IPR011006:IPR009082:IPR 013767:IPR013656:IPR003661:IPR001789:IPR005467:IPR000700:I PR004358:IPR001610; KEGG: gem:GM21_0257 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; response regulator receiver; SPTR: C6DY67 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003809001.1	InterPro IPR013247:IPR003646; KEGG: dba:Dbac_0627 SH3 type 3 domain protein; PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; SPTR: Q1K4G2 SH3, type 3; PFAM: Bacterial SH3 domain
YP_003809002.1	KEGG: CTF1; cardiotrophin 1; K05422 cardiotrophin 1; SPTR: Q5U5Y7 Cardiotrophin 1
YP_003809003.1	KEGG: psa:PST_2453 hypothetical protein; SPTR: A4VMA4 Putative uncharacterized protein
YP_003809004.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR014284:IPR013325:IPR013324:IPR007627:IPR 013249; KEGG: dma:DMR_42310 RNA polymerase ECF-type sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: C4XQ23 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003809005.1	KEGG: jan:Jann_0748 16S rRNA-processing protein RimM; SPTR: Q28UE7 ribosome maturation factor rimM
YP_003809006.1	KEGG: sfu:Sfum_3122 hypothetical protein; SPTR: A0LMZ3 Putative uncharacterized protein
YP_003809007.1	KEGG: glo:Glov_2062 hypothetical protein; SPTR: B3E3F9 Putative uncharacterized protein
YP_003809008.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: dol:Dole_1162  acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: A8ZXL0 phospholipid/glycerol acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_003809009.1	COGs: COG0471 Di- and tricarboxylate transporter; InterPro IPR001898; KEGG: tye:THEYE_A0729 transmembrane transport protein-like protein; PFAM: sodium/sulphate symporter; SPTR: Q1NWM9 Sodium/sulphate symporter; PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter
YP_003809010.1	InterPro IPR000644; KEGG: tye:THEYE_A0728 CBS domain pair, PFAM: CBS domain containing protein; SPTR: B5YK05 CBS domain pair, PFAM: CBS domain
YP_003809011.1	COGs: COG0574 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR008279:IPR002192:IPR013815; KEGG: sfu:Sfum_2666 pyruvate, water dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PRIAM: pyruvate, water dikinase; SPTR: A0LLP2 phosphoenolpyruvate synthase; PFAM: PEP-utilising enzyme, mobile domain; pyruvate phosphate dikinase, PEP/pyruvate binding domain
YP_003809012.1	InterPro IPR011004; KEGG: dal:Dalk_5167 hexapaptide repeat-containing transferase; SPTR: B8FE56 Hexapaptide repeat-containing transferase
YP_003809013.1	KEGG: sat:SYN_01306  cytoplasmic protein; SPTR: Q2LUN8 Hypothetical cytosolic protein
YP_003809014.1	KEGG: sfu:Sfum_0040 hypothetical protein; SPTR: A0LE91 Putative uncharacterized protein
YP_003809015.1	KEGG: gme:Gmet_3273 hypothetical protein; SPTR: Q39QI8 Putative uncharacterized protein
YP_003809016.1	COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR000836; KEGG: hypothetical protein; PFAM: phosphoribosyltransferase; SPTR: B7S0M6 Orotate phosphoribosyltransferase; PFAM: phosphoribosyl transferase domain
YP_003809017.1	COGs: COG4866 conserved hypothetical protein; InterPro IPR016732; KEGG: wsu:WS0153 hypothetical protein; PFAM: Uncharacterised conserved protein UCP018688; SPTR: C9LT12 Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2156)
YP_003809018.1	COGs: COG0112 glycine/serine hydroxymethyltransferase; InterPro IPR015424:IPR001085:IPR015421; KEGG: scl:sce6587 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; PRIAM: glycine hydroxymethyltransferase; SPTR: A9GPH2 serine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase
YP_003809019.1	COGs: COG1896 hydrolase of HD superfamily; InterPro IPR006674:IPR003607; KEGG: dba:Dbac_3189 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Q1K3X2 Metal dependent phosphohydrolase
YP_003809020.1	COGs: COG2191 formylmethanofuran dehydrogenase subunit E; InterPro IPR003814; KEGG: mtp:Mthe_1665 formylmethanofuran dehydrogenase, subunit E region; PFAM: formylmethanofuran dehydrogenase subunit E region; SPTR: A0B9Q7 formylmethanofuran dehydrogenase, subunit E region; PFAM: Prokaryotic dksA/traR C4-type zinc finger; FmdE, Molybdenum formylmethanofuran dehydrogenase operon
YP_003809021.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160:IPR011006:IPR001789; KEGG: dma:DMR_39840  response regulator; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver; SPTR: C4XNX4 Putative response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003809022.1	InterPro IPR013830:IPR013831; KEGG: mgm:Mmc1_1079 GDSL family lipase; SPTR: A0L6K4 Lipolytic enzyme, G-D-S-L family
YP_003809023.1	InterPro IPR011659:IPR011042; KEGG: fsu:Fisuc_0369 WD40 domain protein beta propeller; PFAM: hypothetical protein; SPTR: C9RKQ3 hypothetical protein; PFAM: WD40-like beta Propeller Repeat
YP_003809024.1	KEGG: afw:Anae109_4197 hypothetical protein; SPTR: A7HI29 Conserved hypothetical membrane protein; PFAM: Uncharacterised protein family (UPF0104)
YP_003809025.1	COGs: COG2226 methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: pmh:P9215_04251 methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: methyltransferase type 11; SPTR: A8G360 methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: methyltransferase domain
YP_003809026.1	COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterPro IPR011004:IPR001451:IPR000253; KEGG: dvl:Dvul_2643 hexapaptide repeat-containing transferase; SPTR: A0YYK7 Putative uncharacterized protein
YP_003809027.1	COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterProIPR006426:IPR000583:IPR001962:IPR017932:IPR 014729; KEGG: rrs:RoseRS_4439 asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; PRIAM: Asparagine synthase (glutamine-hydrolyzing); SPTR: A5V1L8 Asparagine synthase (Glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing)
YP_003809028.1	KEGG: sde:Sde_3470 hypothetical protein; SPTR: Q21F04 Thrombospondin type 3 repeat
YP_003809029.1	InterPro IPR005242; KEGG: pth:PTH_0126 integral membrane protein; SPTR: A5D646 Predicted integral membrane protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_003809030.1	InterPro IPR011990; KEGG: sti:Sthe_1174 tetratricopeptide TPR_4; SPTR: D1C2Z3 Tetratricopeptide TPR_4
YP_003809031.1	KEGG: rca:Rcas_4140 hypothetical protein; SPTR: A7NRH5 Putative uncharacterized protein
YP_003809032.1	COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: gur:Gura_2582 polysaccharide export protein; PFAM: polysaccharide export protein; Soluble ligand binding domain; SPTR: A5G4P2 polysaccharide export protein; PFAM: polysaccharide biosynthesis/export protein; SLBB domain
YP_003809033.1	KEGG: ach:Achl_2469 deoxyribodipyrimidine photo-lyase; SPTR: B8HBP6 deoxyribodipyrimidine photo-lyase; PFAM: Uncharacterized protein conserved in bacteria (DUF2320)
YP_003809034.1	COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; InterPro IPR003856; KEGG: dat:HRM2_19670 GumC1; PFAM: lipopolysaccharide biosynthesis protein; SPTR: C0QCJ1 GumC1; PFAM: Chain length determinant protein; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
YP_003809035.1	COGs: COG3267 Type II secretory pathway component ExeA (predicted ATPase); InterPro IPR003593; KEGG: dal:Dalk_5147 peptidoglycan-binding domain 1 protein; SMART: ATPase AAA; SPTR: B8FE36 peptidoglycan-binding domain 1 protein; PFAM: ATPase family associated with various cellular activities (AAA)
YP_003809036.1	COGs: COG0489 ATPase involved in chromosome partitioning; KEGG: dat:HRM2_19680  exopolysaccharide biosynthesis protein (protein-tyrosine kinase); PRIAM: Non-specific protein-tyrosine kinase; SPTR: C0QCJ2 Putative exopolysaccharide biosynthesis protein (Protein-tyrosine kinase); TIGRFAM: capsular exopolysaccharide family
YP_003809037.1	COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017475:IPR017464:IPR003362; KEGG: dat:HRM2_19690 CpsE; PFAM: sugar transferase; SPTR: C0QCJ3 CpsE; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
YP_003809038.1	InterPro IPR013426:IPR019127; KEGG: dde:Dde_0847 hypothetical protein; PFAM: Exosortase EpsH-related; SPTR: Q314J8 Membrane protein, TIGRFAM: eight transmembrane protein EpsH; PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: eight transmembrane protein EpsH (proposed exosortase)
YP_003809039.1	InterPro IPR014263; KEGG: gme:Gmet_1503 hypothetical protein; SPTR: Q39VI7 Putative uncharacterized protein; TIGRFAM: EpsI family protein; PFAM: Protein of unknown function (DUF3485); TIGRFAM: EpsI family protein
YP_003809040.1	InterPro IPR007016; KEGG: hoh:Hoch_0024 O-antigen polymerase; PFAM: O-antigen polymerase; SPTR: C1ZFT0 O-Antigen polymerase; PFAM: O-Antigen ligase
YP_003809041.1	COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: scl:sce8601 CapK related-protein; PFAM: AMP-dependent synthetase and ligase; SPTR: A9FZN1 CapK related-protein; PFAM: AMP-binding enzyme
YP_003809042.1	KEGG: cps:CPS_5021 hypothetical protein; SPTR: A6CBT1 Putative uncharacterized protein
YP_003809043.1	KEGG: phe:Phep_2408 heparinase II/III family protein; SPTR: B0NLH9 Putative uncharacterized protein
YP_003809044.1	InterProIPR001440:IPR013105:IPR019734:IPR013026:IPR 011990; KEGG: dat:HRM2_20780 tetratricopeptide (TPR) domain protein; PFAM: hypothetical protein; hypothetical protein; SPTR: C0QDB3 Tetratricopeptide (TPR) domain protein; PFAM: ChAPs (Chs5p-Arf1p-binding proteins); TIGRFAM:  PEP-CTERM system TPR-repeat lipoprotein
YP_003809045.1	InterPro IPR008928:IPR005829; KEGG: hoh:Hoch_0455 hypothetical protein; SPTR: D0LK62 Putative uncharacterized protein
YP_003809046.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cag:Cagg_2207 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: B8GD23 glycosyl transferase family 2; PFAM: glycosyl transferase family 2
YP_003809047.1	COGs: COG0438 glycosyltransferase; KEGG: rmr:Rmar_0572 glycosyl transferase group 1; SPTR: C1ZFT8 glycosyltransferase
YP_003809048.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: scl:sce0549 glycogen synthase; PFAM: glycosyl transferase group 1; SPTR: A9GV48 glycogen synthase; PFAM: glycosyl transferases group 1
YP_003809049.1	KEGG: Os11g0282800; hypothetical protein; SPTR: Q53NY1 POT family
YP_003809050.1	COGs: COG0438 glycosyltransferase; InterPro IPR001296; KEGG: scl:sce1025 glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: A9EVB1 glycosyltransferase; PFAM: glycosyl transferases group 1
YP_003809051.1	InterPro IPR011330:IPR002509; KEGG: cps:CPS_5022 polysaccharide deacetylase family protein; PFAM: polysaccharide deacetylase; SPTR: Q47U62 polysaccharide deacetylase family protein; PFAM: polysaccharide deacetylase
YP_003809052.1	InterPro IPR016181:IPR000182; KEGG: dal:Dalk_4314 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: A3HRP2 Putative uncharacterized protein; PFAM: acetyltransferase (GNAT) family
YP_003809053.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sfu:Sfum_1732 beta-lactamase domain-containing protein; SPTR: Q1NSR0 beta-lactamase-like; PFAM: Metallo-beta-lactamase superfamily
YP_003809054.1	InterPro IPR006624; KEGG: scl:sce9098 hypothetical protein; SPTR: A9GA14 Putative uncharacterized protein
YP_003809055.1	COGs: COG4623 soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; InterPro IPR001638:IPR008258:IPR000189; KEGG: pca:Pcar_0524 periplasmic binding transport protein/transglycosylase; PFAM: extracellular solute-binding protein family 3; Lytic transglycosylase catalytic; SMART: extracellular solute-binding protein family 3; SPTR: Q3A763 Periplasmic binding transport protein/transglycosylase; PFAM: Transglycosylase SLT domain; Bacterial extracellular solute-binding proteins, family 3
YP_003809056.1	COGs: COG0421 Spermidine synthase; InterPro IPR001045; KEGG: lil:LB311 spermidine synthase; PFAM: spermine synthase; SPTR: Q8EXA3 Spermidine synthase 2; TIGRFAM: spermidine synthase; PFAM: spermine/spermidine synthase; TIGRFAM: spermidine synthase
YP_003809057.1	COGs: COG1586 S-adenosylmethionine decarboxylase; InterPro IPR017716:IPR016067:IPR003826; KEGG: lbl:LBL_4244 S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; SPTR: P0C0A0 S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Bacillus form
YP_003809058.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR010992:IPR000119; KEGG: dps:DP2783 integration host factor, alpha-subunit; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: Q6AJG8 Probable integration host factor, alpha-subunit; PFAM: Bacterial DNA-binding protein; TIGRFAM: integration host factor, subunit alpha
YP_003809059.1	KEGG: bxe:Bxe_B0015 hypothetical protein; SPTR: Q13J30 Putative membrane protein
YP_003809060.1	KEGG: sat:SYN_00080  cytoplasmic protein; SPTR: Q2LWI3 Hypothetical cytosolic protein
YP_003809061.1	KEGG: mrd:Mrad2831_0725 hypothetical protein; SPTR: B1LXH0 Putative uncharacterized protein
YP_003809062.1	COGs: COG1363 cellulase M and related protein; InterPro IPR008007; KEGG: smr:Smar_0057 peptidase M42 family protein; PFAM: peptidase M42 family protein; PRIAM: cellulase; SPTR: A3DKL0 peptidase M42 family protein; PFAM: M42 glutamyl aminopeptidase
YP_003809063.1	KEGG: csa:Csal_1723 diguanylate cyclase with PAS/PAC sensor; SPTR: Q1QWT3 Diguanylate cyclase with PAS/PAC sensor
YP_003809064.1	COGs: COG0584 glycerophosphoryl diester phosphodiesterase; InterPro IPR017946:IPR004129; KEGG: sth:STH2458 glycerophosphodiester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase; SPTR: Q67LK3 glycerophosphodiester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase family
YP_003809065.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: bba:Bd1736 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; SPTR: Q6MMA2 Branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV
YP_003809066.1	COGs: COG0240 glycerol-3-phosphate dehydrogenase; InterProIPR016040:IPR002123:IPR011128:IPR006168:IPR 004827:IPR000463; KEGG: dat:HRM2_10650 GpsA1; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: C0QL91 GpsA1; PFAM: Acyltransferase; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YP_003809068.1	InterPro IPR012337:IPR009057:IPR001584; KEGG: dvl:Dvul_0877 integrase catalytic subunit; PFAM: integrase catalytic region; SPTR: A1VBQ7 integrase, catalytic region; PFAM: integrase core domain
YP_003809069.1	COGs: COG0755 ABC-type transport system involved in cycothcome C biogenesis permease component; InterPro IPR017562:IPR002541:IPR003557; KEGG: dat:HRM2_18920 CcmC2; PFAM: cycothcome C assembly protein; SPTR: C0QBY1 CcmC2; TIGRFAM: cycothcome C-type biogenesis protein CcsB; PFAM: cytochrome C assembly protein; TIGRFAM: cycothcome C-type biogenesis protein CcsB
YP_003809070.1	COGs: COG1333 ResB protein required for cycothcome C biosynthesis; InterPro IPR007816; KEGG: dat:HRM2_18910 ResB; PFAM: ResB family protein; SPTR: C0QBY0 ResB; PFAM: ResB-like family
YP_003809071.1	COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR004800:IPR001347:IPR000644; KEGG: dol:Dole_2110 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; PRIAM: Arabinose-5-phosphate isomerase; SPTR: A8ZTY1 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein
YP_003809072.1	COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR005854:IPR000583:IPR000836:IPR017932; KEGG: sfu:Sfum_0007 amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; SPTR: A0LE59 Amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase
YP_003809073.1	COGs: COG0458 carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR006275:IPR016185:IPR005480:IPR005481:IPR 005479:IPR011607:IPR011761:IPR005483:IPR013817:IPR013816; KEGG: sfu:Sfum_0008 carbamoyl phosphate synthase large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; SPTR: C8R2N3 carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; carbamoyl-phosphate synthetase large chain, oligomerisation domain; carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit
YP_003809074.1	COGs: COG0505 carbamoylphosphate synthase small subunit; InterProIPR006274:IPR002474:IPR000991:IPR017926:IPR 001317:IPR011702:IPR006220; KEGG: sfu:Sfum_0009 carbamoyl phosphate synthase small subunit; PFAM: carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; SPTR: A0LE61 carbamoyl-phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit
YP_003809075.1	KEGG: bgl:bglu_1g07120 glycerone kinase; SPTR: C1TKE3 Putative uncharacterized protein
YP_003809076.1	COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: dal:Dalk_3702 three-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; SPTR: B8FLN6 3-deoxy-D-manno-octulosonic-acid transferase domain protein; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YP_003809077.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764:IPR006089; KEGG: sat:SYN_02128 acyl-CoA dehydrogenase, long-chain specific; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: Q2LS87 Acyl-CoA dehydrogenase, long-chain specific; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003809078.1	KEGG: dal:Dalk_3189 hypothetical protein; SPTR: B8FGH0 Putative uncharacterized protein
YP_003809079.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155:IPR016038; KEGG: dal:Dalk_3190 acetyl-CoA acetyltransferase; PRIAM: propanoyl-CoA C-acyltransferase; SPTR: B8FGH1 propanoyl-CoA C-acyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain
YP_003809080.1	COGs: COG3425 3-hydroxy-3-methylglutaryl CoA synthase; InterProIPR016040:IPR016039:IPR016083:IPR013747:IPR 002878:IPR002198:IPR003033:IPR002347; KEGG: dol:Dole_1550 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; protein of unknown function DUF35; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; Sterol-binding domain protein; SPTR: A8ZZV4 Short-chain dehydrogenase/reductase SDR; PFAM: rubredoxin-like zinc ribbon domain (DUF35_N); 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; short chain dehydrogenase; SCP-2 sterol transfer family
YP_003809081.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterProIPR016040:IPR016083:IPR002539:IPR002198:IPR 003033:IPR002347; KEGG: dal:Dalk_3192 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; MaoC domain protein dehydratase; Sterol-binding domain protein; SPTR: B8FGH3 Short-chain dehydrogenase/reductase SDR; PFAM: MaoC like domain; short chain dehydrogenase; SCP-2 sterol transfer family
YP_003809082.1	InterPro IPR009057:IPR001647:IPR012287; KEGG: dal:Dalk_3193 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FGH4 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003809083.1	KEGG: gau:GAU_2232 MscS mechanosensitive ion channel family protein; SPTR: C9Y7D6 Putative uncharacterized protein
YP_003809084.1	KEGG: tro:trd_1427 hypothetical protein; SPTR: C1HC27 Predicted protein
YP_003809085.1	KEGG: tro:trd_1427 hypothetical protein; SPTR: B9L2M5 Putative membrane protein
YP_003809086.1	KEGG: hypothetical protein; SPTR: B9I5R4 Predicted protein
YP_003809087.1	KEGG: mch:Mchl_3791 hypothetical protein; SPTR: B1BVQ4 Putative uncharacterized protein
YP_003809088.1	COGs: COG1413 FOG: HEAT repeat; InterProIPR016024:IPR004155:IPR000357:IPR011989:IPR 000225; KEGG: rrs:RoseRS_1736 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SPTR: A5UU23 PBS lyase HEAT domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; HEAT repeat; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
YP_003809089.1	COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: lhk:LHK_01911 LivF; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: C1D8V5 LivF; PFAM: ABC transporter
YP_003809090.1	COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: dds:Ddes_0475 ABC transporter related; PFAM: ABC transporter related; SMART: ATPase AAA; SPTR: B8J4C9 ABC transporter related; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter
YP_003809091.1	COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: sfu:Sfum_0858 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A0LGK3 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003809092.1	COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: sfu:Sfum_0861 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: A0LGK6 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_003809093.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tna:CTN_1435 branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; PFAM: extracellular ligand-binding receptor; SPTR: B9K9H8 Branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; PFAM: Receptor family ligand binding region
YP_003809094.1	COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: dal:Dalk_0937 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: Q1NMF7 Uncharacterised conserved protein UCP016719; PFAM: Protein of unknown function (DUF1343)
YP_003809095.1	COGs: COG4448 L-asparaginase II; InterPro IPR010349; KEGG: rxy:Rxyl_1075 L-asparaginase II; PFAM: L-asparaginase II; SPTR: Q1AX37 L-asparaginase II; PFAM: L-asparaginase II
YP_003809096.1	COGs: COG1526 Uncharacterized protein required for formate dehydrogenase activity; InterPro IPR003786; KEGG: fre:Franean1_2306 formate dehydrogenase accessory protein; PFAM: formate dehydrogenase subunit FdhD; SPTR: C0W3Q5 formate dehydrogenase accessory protein; TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: FdhD/NarQ family; TIGRFAM: formate dehydrogenase family accessory protein FdhD
YP_003809097.1	KEGG: nph:NP2780A hypothetical protein; SPTR: C0EZ14 Putative uncharacterized protein; PFAM: Bacterial membrane flanked domain
YP_003809098.1	KEGG: sfu:Sfum_1611 hypothetical protein; SPTR: A0LIP6 Conserved hypothetical membrane protein
YP_003809099.1	InterPro IPR019870:IPR001455; KEGG: dal:Dalk_1678 SirA family protein; SPTR: B8FAT0 SirA family protein; TIGRFAM: selenium metabolism protein YedF; PFAM: SirA-like protein; DsrE/DsrF-like family; TIGRFAM: selenium metabolism protein YedF
YP_003809100.1	KEGG: dol:Dole_0758 hypothetical protein; SPTR: A8ZVA7 Putative uncharacterized protein
YP_003809101.1	InterPro IPR013217; KEGG: gsu:GSU1214 tetracenomycin polyketide synthesis 8-O-methyltransferase, PFAM: methyltransferase type 12; SPTR: Q74DV1 Tetracenomycin polyketide synthesis 8-o-methyltransferase, PFAM: O-methyltransferase
YP_003809102.1	InterPro IPR018449:IPR001450:IPR017896:IPR017900; KEGG: dev:DhcVS_791 iron-sulfur cluster-binding protein, ferredoxin-like protein; PFAM: NIL domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A8CNW3 4Fe-4S ferredoxin, iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain; NIL domain
YP_003809103.1	COGs: COG1900 conserved hypothetical protein; InterPro IPR002708; KEGG: deh:cbdb_A872 hypothetical protein; PFAM: protein of unknown function DUF39; SPTR: Q3ZXP8 Putative uncharacterized protein; PFAM: Domain of unknown function DUF39
YP_003809104.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: sat:SYN_03008 rrf2 family protein; PFAM: protein of unknown function UPF0074; SPTR: Q2LWB5 Rrf2 family protein; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator)
YP_003809105.1	COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR004506:IPR018318:IPR014729; KEGG: pca:Pcar_1858 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase-like; SPTR: C6NVH4 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_003809106.1	COGs: COG0691 tmRNA-binding protein; InterPro IPR000037:IPR020081; KEGG: tfu:Tfu_2476 SsrA-binding protein; PFAM: SmpB protein; SPTR: Q47M13 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein
YP_003809107.1	COGs: COG1080 phosphoenolpyruvate-protein kinase (PTS system EI component); InterProIPR006318:IPR015813:IPR008279:IPR008731:IPR 000121; KEGG: sat:SYN_01729 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; SPTR: Q2LR37 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase
YP_003809108.1	COGs: COG0313 methyltransferase; InterProIPR008189:IPR005698:IPR000878:IPR000032:IPR 014777:IPR001020:IPR002114:IPR018063; KEGG: sti:Sthe_1932 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; phosphoryl transfer system HPr; SPTR: D1C547 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; TIGRFAM: phosphocarrier, HPr family; PFAM: PTS HPr component phosphorylation site; Tetrapyrrole (Corrin/Porphyrin) methylases; TIGRFAM: conserved hypothetical protein TIGR00096; phosphotransferase System HPr (HPr) Family
YP_003809109.1	COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; InterPro IPR003509:IPR011335; KEGG: dau:Daud_0666 hypothetical protein; PFAM: protein of unknown function UPF0102; SPTR: B1I2N7 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: conserved hypothetical protein TIGR00252
YP_003809110.1	COGs: COG0164 ribonuclease HII; InterPro IPR012337:IPR001352; KEGG: ade:Adeh_0278 ribonuclease HII; PFAM: ribonuclease HII/HIII; PRIAM: ribonuclease H; SPTR: Q1NQ19 ribonuclease; PFAM: ribonuclease HII
YP_003809111.1	COGs: COG0335 ribosomal protein L19; InterPro IPR001857:IPR018257; KEGG: dau:Daud_0661 50S ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: C8W5A3 ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type
YP_003809112.1	COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; InterPro IPR002649:IPR016009:IPR017871; KEGG: det:DET0339 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: Q3Z9L3 tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase
YP_003809113.1	COGs: COG0806 RimM protein required for 16S rRNA processing; InterProIPR011961:IPR011033:IPR002676:IPR007903:IPR 002345; KEGG: dal:Dalk_4647 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; SPTR: B8FNP4 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM
YP_003809114.1	COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR009019:IPR004088; KEGG: dal:Dalk_4648 hypothetical protein; SPTR: B8FNP5 Putative uncharacterized protein
YP_003809115.1	COGs: COG0228 ribosomal protein S16; InterPro IPR000307:IPR020592; KEGG: sat:SYN_00765 SSU ribosomal protein S16P; PFAM: ribosomal protein S16; SPTR: C8QYR0 ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; TIGRFAM: ribosomal protein S16
YP_003809116.1	COGs: COG0541 Signal recognition particle GTPase; InterProIPR004780:IPR004125:IPR013822:IPR000897:IPR 003593; KEGG: sfu:Sfum_3038 signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; SMART: ATPase AAA; SPTR: A0LML8 Signal recognition particle subunit FFH/SRP54 (Srp54); TIGRFAM: signal recognition particle protein; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein
YP_003809117.1	COGs: COG4012 conserved hypothetical protein; InterPro IPR014846; KEGG: mta:Moth_0877 pyruvate formate-lyase activating enzyme; PFAM: Domain of unkown function DUF1786  pyruvate format-lyase activating enzyme; SPTR: C0GKM6 Protein of unkown function DUF1786; pyruvate format-lyase activating enzyme; PFAM: Putative pyruvate format-lyase activating enzyme (DUF1786)
YP_003809118.1	COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR009036:IPR000594:IPR016040; KEGG: reh:H16_A1870 ThiF/MoeB/HesA family protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: A1HS23 UBA/THIF-type NAD/FAD binding protein; PFAM: ThiF family
YP_003809119.1	COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604:IPR003395; KEGG: gme:Gmet_0942 DNA repair protein RecN; PFAM: SMC domain protein; SPTR: Q39X40 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN
YP_003809120.1	COGs: COG0709 Selenophosphate synthase; Contains Selenocysteine; InterPro IPR004536:IPR016188:IPR010918:IPR000728; KEGG: sfu:Sfum_3401 selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; SPTR: A0LNS2 Selenophosphate synthase; TIGRFAM: selenide, water dikinase; manually curated; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: selenium donor protein
YP_003809121.1	COGs: COG4087 Soluble P-type ATPase; KEGG: sat:SYN_00624 hydrolase; SPTR: Q2LPK6 Hydrolase
YP_003809122.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: dal:Dalk_0925 transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: Q1K103 Transcriptional regulator, LysR family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_003809123.1	COGs: COG1402 Uncharacterized protein  amidase; InterPro IPR003785; KEGG: sfu:Sfum_0661 creatininase; PFAM: creatininase; SPTR: A0LG08 creatininase; PFAM: Creatinine amidohydrolase
YP_003809124.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterProIPR000014:IPR000160:IPR003660:IPR013767:IPR 013655:IPR013656:IPR000700:IPR001610; KEGG: dar:Daro_1156 diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PRIAM: Diguanylate kinase; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: Q47GW9 Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: HAMP domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain
YP_003809125.1	COGs: COG2206 HD-GYP domain; InterPro IPR006674:IPR003607; KEGG: hor:Hore_12730 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: B8CXK4 Metal dependent phosphohydrolase; PFAM: HD domain
YP_003809126.1	KEGG: dol:Dole_0335 hypothetical protein; SPTR: A8ZSY1 Putative uncharacterized protein
YP_003809127.1	COGs: COG1023 6-phosphogluconate dehydrogenase; InterProIPR004849:IPR016040:IPR008927:IPR006115:IPR 006114:IPR006183:IPR013328:IPR016059:IPR002204; KEGG: dma:DMR_05560  6-phosphogluconate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; SPTR: C4XI85 Putative 6-phosphogluconate dehydrogenase; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase, C-terminal domain; TIGRFAM: 6-phosphogluconate dehydrogenase (decarboxylating)
YP_003809128.1	COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: mdi:METDI3453  acyltransferase; membrane protein; PFAM: acyltransferase 3; SPTR: A9W679 Acyltransferase 3; PFAM: Acyltransferase family
YP_003809129.1	COGs: COG2208 serine phosphatase RsbU regulator of sigma subunit; InterPro IPR004010:IPR003660:IPR010822:IPR001932; KEGG: dma:DMR_08680  phosphatase; PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; Cache domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; SPTR: C4XK04 Putative phosphatase; PFAM: HAMP domain; Cache domain; Stage II sporulation protein E (SpoIIE)
YP_003809130.1	COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR015168; KEGG: glo:Glov_2024 NMT1/THI5 like domain protein; PFAM: NMT1/THI5 like domain protein; SPTR: B3E2T3 NMT1/THI5 like domain protein; PFAM: NMT1/THI5 like
YP_003809131.1	KEGG: dba:Dbac_3265 oligosaccharyl transferase STT3 subunit; SPTR: C7LP23 Oligosaccharyl transferase STT3 subunit
YP_003809132.1	COGs: COG0512 anthranilate/para-aminobenzoate synthase component II; InterProIPR006221:IPR000991:IPR017926:IPR006220:IPR 011702:IPR001317; KEGG: dol:Dole_1098 glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; SPTR: A8ZX49 Glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
YP_003809133.1	COGs: COG0147 anthranilate/para-aminobenzoate synthase component I; InterProIPR005802:IPR005801:IPR001544:IPR006805:IPR 015890:IPR019999; KEGG: dat:HRM2_08090 PabB; PFAM: Chorismate binding-like; anthranilate synthase component I domain protein; aminotransferase class IV; SPTR: C0QJR9 PabB; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Aminotransferase class IV; anthranilate synthase component I, N terminal region; chorismate binding enzyme; TIGRFAM: aminodeoxychorismate synthase, component I, bacterial clade
YP_003809134.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR011904:IPR000873:IPR020845; KEGG: sfu:Sfum_0745 acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: C5SA66 Acetate/CoA ligase; TIGRFAM: acetate/CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase
YP_003809135.1	InterPro IPR018249:IPR011992:IPR018247; KEGG: dsa:Desal_3162  signal transduction protein with EFhand domain protein; SPTR: C6C212 Putative signal transduction protein with EFhand domain protein
YP_003809136.1	COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004481:IPR004837; KEGG: dde:Dde_1854 K+-dependent Na+/Ca+ exchanger related-protein; PFAM: sodium/calcium exchanger membrane region; SPTR: C3X692 Na+/Ca+ antiporter; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: Sodium/calcium exchanger protein; TIGRFAM: K+-dependent Na+/Ca+ exchanger related-protein
YP_003809137.1	COGs: COG0789 transcriptional regulator protein; InterPro IPR009061:IPR000551:IPR015358; KEGG: dal:Dalk_5275 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; SPTR: B8FEG4 Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein; MerR, DNA binding
YP_003809138.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764:IPR006089; KEGG: dal:Dalk_5274 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FEG3 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003809139.1	KEGG: similar to CG15216-PA; SPTR: A5KA25 Putative uncharacterized protein
YP_003809140.1	InterPro IPR009057:IPR011075:IPR001647:IPR012287; KEGG: dal:Dalk_1849 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FFZ1 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_003809141.1	InterPro IPR016083; KEGG: dal:Dalk_1848 hypothetical protein; SPTR: B8FFZ0 Putative uncharacterized protein; PFAM: SCP-2 sterol transfer family
YP_003809142.1	COGs: COG4739 Uncharacterized protein containing a ferredoxin domain; InterPro IPR019224; KEGG: mka:MK0124 ferredoxin domain-containing protein; PFAM: Protein of unknown function DUF2148; SPTR: Q8TZ17 Ferredoxin domain containing protein; PFAM: Uncharacterized protein containing a ferredoxin domain (DUF2148)
YP_003809143.1	COGs: COG4739 Uncharacterized protein containing a ferredoxin domain; InterPro IPR019224; KEGG: afu:AF2201 hypothetical protein; PFAM: Protein of unknown function DUF2148; SPTR: O28082 Uncharacterized protein AF_2201; PFAM: Uncharacterized protein containing a ferredoxin domain (DUF2148)
YP_003809144.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dol:Dole_1473 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A8ZZC4 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003809145.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006090:IPR 013786:IPR006091:IPR013764:IPR006089; KEGG: dal:Dalk_1847 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FFY9 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003809146.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR002155:IPR016038; KEGG: dal:Dalk_1844 propanoyl-CoA C-acyltransferase; PRIAM: propanoyl-CoA C-acyltransferase; SPTR: B8FFY6 propanoyl-CoA C-acyltransferase; PFAM: thiolase, C-terminal domain; thiolase, N-terminal domain
YP_003809147.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR016040:IPR002198:IPR002347; KEGG: dol:Dole_1475 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A8ZZC6 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_003809148.1	COGs: COG1013 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit beta; InterPro IPR011766; KEGG: sfu:Sfum_2795 thiamine pyrophosphate binding domain-containing protein; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; SPTR: A0LM21 pyruvate ferredoxin oxidoreductase, subunit beta; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_003809149.1	COGs: COG0674 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit alpha; InterPro IPR009014:IPR002880:IPR015941; KEGG: sfu:Sfum_2794 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SPTR: A0LM20 pyruvate ferredoxin oxidoreductase, subunit alpha; PFAM: domain
YP_003809150.1	COGs: COG1144 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit delta; InterPro IPR011898:IPR001450:IPR017896:IPR017900; KEGG: sfu:Sfum_2793 pyruvate ferredoxin/flavodoxin oxidoreductase, subunit delta; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LM19 pyruvate ferredoxin oxidoreductase, subunit delta; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, subunit delta; PFAM: 4Fe-4S binding domain; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, subunit delta, pyruvate/2-ketoisovalerate family
YP_003809151.1	COGs: COG1014 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase subunit gamma; InterPro IPR011894:IPR002869:IPR019752; KEGG: sat:SYN_00157 pyruvate:ferredoxin oxidoreductase subunit gamma; PFAM: pyruvate/ketoisovalerate oxidoreductase; SPTR: Q2LYF2 pyruvate:ferredoxin oxidoreductase subunit gamma; TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, subunit gamma; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, subunit gamma, pyruvate/2-ketoisovalerate family
YP_003809152.1	COGs: COG0670 Integral membrane protein interacts with FtsH; InterPro IPR006214; KEGG: dol:Dole_1724 hypothetical protein; PFAM: protein of unknown function UPF0005; SPTR: A9A0M8 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0005
YP_003809153.1	KEGG: dma:DMR_04620 hypothetical protein; SPTR: C4XHZ1 Putative uncharacterized protein
YP_003809154.1	KEGG: dma:DMR_04620 hypothetical protein; SPTR: C0W603 NLP/P60 protein
YP_003809155.1	KEGG: dal:Dalk_2965 protein of unknown function DUF169; SPTR: B8FL20 Putative uncharacterized protein; PFAM: Uncharacterised ArCR, COG2043
YP_003809156.1	InterProIPR007730:IPR001440:IPR013105:IPR019734:IPR 013026:IPR011990:IPR004838; KEGG: bph:Bphy_0722 hypothetical protein; PFAM: Sporulation domain protein; hypothetical protein; hypothetical protein; SPTR: B5WWJ9 hypothetical protein (Fragment); PFAM: Sporulation related domain
YP_003809157.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR003594:IPR009082:IPR013767:IPR 003661:IPR005467:IPR004358; KEGG: dma:DMR_23810  sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: C4XT75 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003809158.1	KEGG: bph:Bphy_3066 5-methylaminomethyl-2-thiouridine methyltransferase; SPTR: A5PEL2 peptidyl-prolyl cis-trans isomerase
YP_003809159.1	InterPro IPR013026:IPR011990:IPR019734; KEGG: dsa:Desal_2816 tetratricopeptide TPR_2 repeat protein; SPTR: C0GTF0 hypothetical protein
YP_003809160.1	COGs: COG0147 anthranilate/para-aminobenzoate synthase component I; InterPro IPR005801:IPR006805:IPR015890:IPR019999; KEGG: sth:STH1407 anthranilate synthetase component I; PFAM: Chorismate binding-like; anthranilate synthase component I domain protein; PRIAM: anthranilate synthase; SPTR: Q67PK1 anthranilate synthetase component I; PFAM: anthranilate synthase component I, N terminal region; chorismate binding enzyme
YP_003809161.1	COGs: COG0512 anthranilate/para-aminobenzoate synthase component II; InterProIPR006221:IPR000991:IPR017926:IPR006220:IPR 011702:IPR001317; KEGG: net:Neut_0135 anthranilate synthase component II; PFAM: glutamine amidotransferase class-I; SPTR: Q0AJP8 anthranilate synthase, component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
YP_003809162.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006268:IPR006218:IPR013785; KEGG: adg:Adeg_1912 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: C9R9L3 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; phospho-2-dehydro-3-deoxyheptonate aldolase
YP_003809163.1	COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; InterPro IPR006264:IPR013792:IPR001986:IPR016228; KEGG: gyc:GYMC61_0484 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); SPTR: C9S0L6 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase
YP_003809164.1	COGs: COG0169 shikimate 5-dehydrogenase; InterPro IPR016040:IPR013708:IPR006151; KEGG: dat:HRM2_30830 AroE2; PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; SPTR: C0QKS6 AroE2; PFAM: shikimate dehydrogenase substrate binding domain; shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase
YP_003809165.1	COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR000623:IPR002658; KEGG: gdj:Gdia_0403 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; shikimate kinase; PRIAM: shikimate kinase., 3-dehydroquinate synthase; SPTR: A9HL64 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; shikimate kinase; TIGRFAM: 3-dehydroquinate synthase
YP_003809166.1	COGs: COG0082 Chorismate synthase; InterPro IPR000453:IPR020541; KEGG: gym:GYMC10_0211 chorismate synthase; PFAM: chorismate synthase; PRIAM: Chorismate synthase; SPTR: A6PTT1 Chorismate synthase; TIGRFAM: chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase
YP_003809167.1	COGs: COG0757 3-dehydroquinate dehydratase II; InterPro IPR001874:IPR018509; KEGG: avi:Avi_1789 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: Q05SG5 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II
YP_003809168.1	COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR011343:IPR002915:IPR013785; KEGG: syn:sll1776 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR: C0GHU1 Deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase
YP_003809169.1	COGs: COG3379 conserved hypothetical protein; InterPro IPR017850:IPR002591:IPR017849; KEGG: dvu:DVU0155 type I phosphodiesterase/nucleotide pyrophosphatase family protein; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: Q72FQ8 Type I phosphodiesterase/nucleotide pyrophosphatase family protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase
YP_003809170.1	KEGG: mav:MAV_0478 L-carnitine dehydratase/bile acid-inducible protein F; SPTR: A0QA22 L-carnitine dehydratase/bile acid-inducible protein F
YP_003809171.1	KEGG: geo:Geob_2985 hypothetical protein; SPTR: B9M2Y2 Putative uncharacterized protein
YP_003809172.1	COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterProIPR005259:IPR011545:IPR001650:IPR014021:IPR 014001; KEGG: afw:Anae109_0770 primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; SPTR: Q1NTV1 Primosomal protein n; TIGRFAM: primosomal protein N'; PFAM: Helicase conserved C-terminal domain; TIGRFAM: primosomal protein N'
YP_003809173.1	COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterProIPR017820:IPR012001:IPR012000:IPR011766:IPR 000399; KEGG: dal:Dalk_1400 sulfoacetaldehyde acetyltransferase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; SPTR: B8FA04 Sulfoacetaldehyde acetyltransferase; TIGRFAM: sulfoacetaldehyde acetyltransferase; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: sulfoacetaldehyde acetyltransferase
YP_003809174.1	COGs: COG0778 Nitroreductase; InterPro IPR000415:IPR001450:IPR017896:IPR017900; KEGG: dma:DMR_23050 nitroreductase family protein; PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C4XSV4 Nitroreductase family protein; PFAM: Nitroreductase family; 4Fe-4S binding domain
YP_003809175.1	COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR008978:IPR002068; KEGG: afr:AFE_2086 heat shock protein, HSP20 family; PFAM: heat shock protein Hsp20; SPTR: B7J4U6 Heat shock protein, Hsp20 family; PFAM: Hsp20/alpha crystallin family
YP_003809176.1	COGs: COG0466 ATP-dependent Lon protease; InterProIPR004815:IPR020568:IPR003111:IPR003959:IPR 008269:IPR001984:IPR003593:IPR008268; KEGG: dol:Dole_1099 ATP-dependent protease La; PFAM: ATPase AAA; peptidase S16 lon domain protein; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; ATPase AAA; SPTR: A8ZX50 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La
YP_003809177.1	COGs: COG0529 Adenylylsulfate kinase and related kinase; InterPro IPR002891; KEGG: rxy:Rxyl_2355 adenylylsulfate kinase; PFAM: adenylylsulfate kinase; PRIAM: Adenylyl-sulfate kinase; SPTR: Q1ATJ5 Adenylyl-sulfate kinase; TIGRFAM: adenylylsulfate kinase; PFAM: Adenylylsulphate kinase; TIGRFAM: adenylylsulfate kinase (apsK)
YP_003809178.1	COGs: COG3379 conserved hypothetical protein; InterPro IPR017850:IPR002591:IPR017849; KEGG: hor:Hore_17290 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: B8CYV9 Type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase
YP_003809179.1	COGs: COG1406 inhibitor of MCP methylation homolog of CheC; InterPro IPR007597; KEGG: dal:Dalk_0295 CheC domain protein; PFAM: CheC domain protein; SPTR: B8F8X2 CheC domain protein; PFAM: CheC-like family
YP_003809180.1	COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterProIPR001155:IPR013027:IPR000103:IPR013785:IPR 016040; KEGG: dal:Dalk_2520 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: B8FFF3 NADH:flavin oxidoreductase/NADH oxidase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH:flavin oxidoreductase / NADH oxidase family
YP_003809181.1	COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterPro IPR011004:IPR001451; KEGG: dma:DMR_34380  acetyltransferase; SPTR: C4XKI9 Putative acetyltransferase
YP_003809182.1	InterPro IPR013830:IPR001087; KEGG: dma:DMR_02790 hypothetical protein; PFAM: lipolytic protein G-D-S-L family; SPTR: C4XGJ0 Putative uncharacterized protein; PFAM: GDSL-like Lipase/Acylhydrolase
YP_003809183.1	COGs: COG2255 Holliday junction resolvasome helicase subunit; InterProIPR004605:IPR008824:IPR003959:IPR008823:IPR 011991:IPR003593; KEGG: gme:Gmet_0746 Holliday junction DNA helicase RuvB; PFAM: ATPase AAA; Holliday junction DNA helicase RuvB domain; SMART: ATPase AAA; SPTR: Q39XN6 Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit
YP_003809184.1	COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; InterProIPR000085:IPR016027:IPR010994:IPR011114:IPR 013849:IPR012340:IPR003583; KEGG: glo:Glov_1248 Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; SPTR: A2SKV0 Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit
YP_003809185.1	COGs: COG0817 Holliday junction resolvasome endonuclease subunit; InterPro IPR002176:IPR012337:IPR020563; KEGG: mgm:Mmc1_0478 Holliday junction endonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Q1D2J4 Crossover junction endodeoxyribonuclease ruvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC
YP_003809186.1	COGs: COG0217 conserved hypothetical protein; InterPro IPR002876:IPR017856; KEGG: dat:HRM2_04000 hypothetical protein; PFAM: protein of unknown function DUF28; SPTR: C0QGP3 UPF0082 protein HRM2_04000; PFAM: Domain of unknown function DUF28; TIGRFAM: conserved hypothetical protein TIGR01033
YP_003809187.1	COGs: COG0293 23S rRNA methylase; InterPro IPR002877:IPR016448; KEGG: drt:Dret_1749 ribosomal RNA methyltransferase RrmJ/FtsJ; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; SPTR: C8X3N6 ribosomal RNA methyltransferase RrmJ/FtsJ; PFAM: FtsJ-like methyltransferase; TIGRFAM: cell division protein FtsJ
YP_003809188.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683; KEGG: pfl:PFL_2301 thioesterase family protein; PFAM: thioesterase superfamily protein; SPTR: Q4KEC5 thioesterase family protein; PFAM: thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_003809189.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: dal:Dalk_1637 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B8FAN9 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_003809190.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR017730:IPR004176:IPR003959:IPR013093:IPR 019489:IPR001270:IPR003593:IPR018368; KEGG: dal:Dalk_3434 ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; SMART: ATPase AAA; SPTR: B8FLH6 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB
YP_003809191.1	InterPro IPR008969; KEGG: hypothetical protein; SPTR: B7G5I9 Predicted protein
YP_003809192.1	COGs: COG0463 glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: chy:CHY_1050 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q3AD88 glycosyltransferase, group 2 family; PFAM: glycosyl transferase family 2
YP_003809193.1	KEGG: rca:Rcas_3345 hypothetical protein; SPTR: A7NP99 Putative uncharacterized protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase
YP_003809194.1	InterPro IPR013216; KEGG: mxa:MXAN_0096 hypothetical protein; PFAM: methyltransferase type 11; SPTR: Q1DG44 Putative uncharacterized protein; PFAM: methyltransferase domain
YP_003809195.1	InterPro IPR013163; KEGG: dal:Dalk_1114 cache, type 2 domain protein; PFAM: Cache type 2 domain protein; SPTR: B8F971 Cache, type 2 domain protein; PFAM: Cache domain
YP_003809196.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterProIPR004514:IPR011035:IPR020058:IPR020059:IPR 020060:IPR020061:IPR020056:IPR001412; KEGG: dvm:DvMF_1485 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; SPTR: B8DLQ7 Glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase
YP_003809197.1	COGs: COG0789 transcriptional regulator protein; InterPro IPR009061:IPR000551:IPR015358; KEGG: dal:Dalk_5275 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; SPTR: B8FEG4 Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein; MerR, DNA binding
YP_003809198.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764:IPR006089; KEGG: dol:Dole_2182 acyl-CoA dehydrogenase domain-containing protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: A8ZUF4 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003809199.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006090:IPR 013786:IPR006091:IPR013764; KEGG: dal:Dalk_3349 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B8FJB1 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain
YP_003809200.1	COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022:IPR011762:IPR011763; KEGG: dol:Dole_2180 propionyl-CoA carboxylase; PFAM: carboxyl transferase; PRIAM: methylcrotonoyl-CoA carboxylase; SPTR: A8ZUF2 Propionyl-CoA carboxylase; PFAM: carboxyl transferase domain
YP_003809201.1	COGs: COG4770 Acetyl/propionyl-CoA carboxylase subunit alpha; InterProIPR016185:IPR011054:IPR005481:IPR005479:IPR 005482:IPR011761:IPR011764:IPR013817:IPR013816; KEGG: dol:Dole_2179 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; SPTR: A8ZUF1 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase
YP_003809202.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dal:Dalk_4148 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B8FMW2 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_003809203.1	COGs: COG4770 Acetyl/propionyl-CoA carboxylase subunit alpha; InterPro IPR011053:IPR000089:IPR001882; KEGG: dol:Dole_2178 biotin/lipoyl attachment domain-containing protein; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: A8ZUF0 Biotin/lipoyl attachment domain-containing protein; PFAM: Biotin-requiring enzyme
YP_003809204.1	COGs: COG1024 enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: dal:Dalk_2073 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase; SPTR: B8FG88 enoyl-CoA hydratase/isomerase; PFAM: enoyl-CoA hydratase/isomerase family
YP_003809205.1	InterPro IPR010839; KEGG: dal:Dalk_3171 protein of unknown function DUF1446; PFAM: protein of unknown function DUF1446; SPTR: B8FGF2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1446)
YP_003809206.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR013786:IPR013764:IPR006089; KEGG: sfu:Sfum_1260 acyl-CoA dehydrogenase domain-containing protein; PFAM: acyl-CoA dehydrogenase domain protein; SPTR: A0LHQ0 Isovaleryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_003809207.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR005839:IPR005840:IPR013848:IPR007197:IPR 006638; KEGG: sfu:Sfum_1585 MiaB-like tRNA modifying enzyme YliG; PFAM: Protein of unknown function UPF0004 ; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: A0LIM0 ribosomal protein S12 methylthiotransferase rimO; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family
YP_003809208.1	KEGG: lsp:Bsph_2131 phosphoesterase, PA-phosphatase related; SPTR: B1HUZ1 phosphoesterase, PA-phosphatase related
YP_003809209.1	KEGG: aac:Aaci_0019 protein of unknown function UPF0150; SPTR: C8WPY0 Putative uncharacterized protein
YP_003809210.1	COGs: COG0215 Cysteinyl-tRNA synthetase; InterProIPR005856:IPR002308:IPR001926:IPR009080:IPR 015803:IPR015273:IPR014729:IPR001216; KEGG: dal:Dalk_3820 cysteine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; SPTR: B8FC88 Cysteine synthase; TIGRFAM: cysteine synthase; cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; pyridoxal-phosphate dependent enzyme; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; cysteine synthases; cysteinyl-tRNA synthetase
YP_003809211.1	InterPro IPR013105:IPR019734:IPR013026:IPR011990; KEGG: ttu:TERTU_4325 tetratricopeptide repeat domain protein; PFAM: hypothetical protein; SPTR: C5BIE3 Tetratricopeptide repeat domain protein
YP_003809212.1	KEGG: afo:Afer_1450 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Q3J0I5 Sigma-54, RpoN
YP_003809213.1	KEGG: sde:Sde_1498 hypothetical protein; SPTR: A7LUH4 Putative uncharacterized protein
YP_003809214.1	COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063:IPR012089:IPR014729; KEGG: sfu:Sfum_0716 PP-loop domain-containing protein; PFAM: PP-loop domain protein; SPTR: C6I155 Probable ATPase, PP-loop superfamily protein; PFAM: PP-loop family
YP_003809215.1	COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: scl:sce0105 hypothetical protein; PFAM: pentapeptide repeat protein; SPTR: A9GLE4 Putative uncharacterized protein; PFAM: Pentapeptide repeats (8 copies)
YP_003809216.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR014284:IPR013325:IPR013324:IPR007627:IPR 007624:IPR007630:IPR000943:IPR011991; KEGG: dps:DP2503 RNA polymerase sigma factor (RpoD); PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; SPTR: C8R003 RNA polymerase, sigma 70 subunit, RpoD subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_003809217.1	COGs: COG2076 Membrane transporter of cations and cationic drugs; InterPro IPR000390; KEGG: mei:Msip34_1120 small multidrug resistance protein; PFAM: small multidrug resistance protein; SPTR: C6XCU2 Small multidrug resistance protein; PFAM: Small Multidrug Resistance protein
YP_003809218.1	COGs: COG0840 methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: dal:Dalk_1135 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: B8F992 methyl-accepting chemotaxis sensory transducer; PFAM: methyl-accepting chemotaxis protein (MCP) signaling domain
YP_003809219.1	COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: dhd:Dhaf_2858 acetyl-CoA hydrolase/transferase; PFAM: acetyl-CoA hydrolase/transferase; SPTR: Q24WU2 Putative uncharacterized protein; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain
YP_003809220.1	COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: drm:Dred_1489 acetyl-CoA hydrolase/transferase; PFAM: acetyl-CoA hydrolase/transferase; SPTR: A4J4L6 Acetyl-CoA hydrolase/transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain
YP_003809221.1	KEGG: acp:A2cp1_3965 DNA repair protein RadC; SPTR: B8J8K0 DNA repair protein RadC
YP_003809222.1	InterPro IPR009057:IPR014875; KEGG: amt:Amet_4373 hypothetical protein; PFAM: Mor transcription activator domain protein; SPTR: C6IXL2 Predicted protein; PFAM: Mor transcription activator family
YP_003809223.1	KEGG: ank:AnaeK_3859 hypothetical protein; SPTR: B4UEV3 Putative uncharacterized protein
YP_003809224.1	KEGG: hypothetical protein; SPTR: C3Z5T8 Putative uncharacterized protein
YP_003809225.1	KEGG: hypothetical protein; SPTR: C3XWY5 Putative uncharacterized protein (Fragment)
YP_003809226.1	KEGG: xce:Xcel_3312 catalase/peroxidase HPI; SPTR: A4HLU0 Putative uncharacterized protein; PFAM: Phage terminase small subunit
YP_003809227.1	InterPro IPR006517; KEGG: gem:GM21_3672 hypothetical protein; SPTR: C6E6R5 Putative uncharacterized protein; TIGRFAM: phage uncharacterized protein; PFAM: Terminase-like family; TIGRFAM: phage uncharacterized protein ( large terminase), C-terminal domain
YP_003809228.1	COGs: COG4695 Phage-related protein; InterPro IPR006427:IPR006944; KEGG: emi:Emin_0697 HK97 family phage portal protein; PFAM: portal protein; SPTR: B2KCK6 Phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family
YP_003809229.1	InterPro IPR006433; KEGG: gdj:Gdia_0566 peptidase U35 phage prohead HK97; PFAM: peptidase U35 phage prohead HK97; SPTR: B9XDE6 Putative uncharacterized protein; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family
YP_003809230.1	COGs: COG4653 phage phi-C31 gp36 major capsid-like protein; InterPro IPR006444; KEGG: emi:Emin_1086 HK97 family phage major capsid protein; PFAM: major capsid protein HK97; SPTR: B2KDP2 Phage major capsid protein, HK97 family; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family
YP_003809231.1	KEGG: ngk:NGK_1435  phage associated protein; SPTR: Q5F999 Putative uncharacterized protein; PFAM: Phage QLRG family,  DNA packaging
YP_003809232.1	KEGG: rpt:Rpal_0680 phage virion morphogenesis protein; SPTR: B3QCM6 Phage virion morphogenesis protein; PFAM: Bacteriophage protein of unknown function (DUF646)
YP_003809233.1	KEGG: cyn:Cyan7425_0396 phenylalanyl-tRNA synthetase, subunit beta; SPTR: B4VQ99 Penicillin-binding Protein dimerisation domain family
YP_003809234.1	KEGG: aba:Acid345_3417 hypothetical protein; SPTR: C6MR04 Putative uncharacterized protein
YP_003809235.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR012338:IPR001460; KEGG: pca:Pcar_1370 FtsI-like cell division protein; PFAM: penicillin-binding protein transpeptidase; SPTR: Q3A4U0 FtsI-like cell division protein; PFAM: Penicillin binding protein transpeptidase domain
YP_003809236.1	COGs: COG0172 Seryl-tRNA synthetase; InterProIPR002317:IPR010978:IPR015866:IPR002314:IPR 006195:IPR018156; KEGG: dal:Dalk_4396 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; PRIAM: serine--tRNA ligase; SPTR: B8FNA6 Seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II core domain (G, H, P, S and T); Seryl-tRNA synthetase N-terminal domain; TIGRFAM: seryl-tRNA synthetase
YP_003809237.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160:IPR003018; KEGG: rrs:RoseRS_3816 diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein; SPTR: A5UZW7 Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_003809238.1	COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR000014:IPR003594:IPR009082:IPR003018:IPR 013656:IPR003661:IPR005467:IPR004358; KEGG: cau:Caur_1383 PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; SPTR: A9W9X5 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_003809240.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: dal:Dalk_3118 beta-lactamase domain protein; SPTR: B8FBQ5 beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_003809241.1	InterPro IPR000014:IPR009082:IPR013767; KEGG: dvm:DvMF_0616 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: PAS fold domain protein; SMART: PAS domain containing protein; SPTR: B8DJX7 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box
YP_003809242.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR011006:IPR009057:IPR001789:IPR002078:IPR 002197:IPR020441:IPR003593; KEGG: gme:Gmet_0961 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; SPTR: Q39X21 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_003809243.1	InterPro IPR001623:IPR003095; KEGG: cce:Ccel_1797 chaperone protein DnaJ; PFAM: heat shock protein DnaJ domain protein; SPTR: B9XFY3 Chaperone protein dnaJ; PFAM: DnaJ domain
YP_003809244.1	KEGG: similar to proline-rich proteoglycan 2; SPTR: A5AFZ6 Putative uncharacterized protein
YP_003809245.1	COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054:IPR007890; KEGG: sfu:Sfum_2382 adenylate/guanylate cyclase; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: A0LKW1 Adenylate/guanylate cyclase; PFAM: Adenylate and Guanylate cyclase catalytic domain; CHASE2 domain
YP_003809246.1	COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: sfu:Sfum_2381 peptidase M48, Ste24p; PFAM: peptidase M48 Ste24p; SPTR: A0LKW0 peptidase M48, Ste24p; PFAM: peptidase family M48
YP_003809247.1	InterPro IPR010466; KEGG: sfu:Sfum_2380 hypothetical protein; PFAM: protein of unknown function DUF1058; SPTR: A0LKV9 Putative uncharacterized protein; PFAM: Bacterial SH3 domain
YP_003809248.1	COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR003018:IPR006674:IPR003607; KEGG: dal:Dalk_3112 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region; SPTR: B8FBP9 Metal dependent phosphohydrolase; PFAM: HD domain; GAF domain
YP_003809249.1	COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: sat:SYN_00175 metal-dependent hydrolase; SPTR: Q2LQ10 Metal-dependent hydrolase
YP_003809250.1	COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525:IPR000412; KEGG: mxa:MXAN_4623 O-antigen ABC exporter, permease protein; PFAM: ABC transporter; SPTR: Q094Z0 O-antigen export system permease protein RfbA; PFAM: ABC transporter