-- dump date 20120504_143348 -- class Genbank::CDS -- table cds_note -- id note YP_003189589.1 KEGG: bsu:BSU00010 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase YP_003189590.1 KEGG: baa:BA_0597 DNA polymerase III beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain YP_003189591.1 PFAM: RNA-binding S4 domain protein; KEGG: geo:Geob_1253 RNA-binding S4 domain protein YP_003189592.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: baa:BA_0599 RecF protein YP_003189593.1 KEGG: bha:BH0005 hypothetical protein YP_003189594.1 KEGG: bha:BH0006 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein YP_003189595.1 KEGG: bha:BH0007 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_003189597.1 PFAM: FAD dependent oxidoreductase; KEGG: sat:SYN_02917 FAD-dependent dehydrogenase YP_003189598.1 KEGG: bsu:BSU40420 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_003189599.1 KEGG: nmu:Nmul_A2304 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; SMART: helicase domain protein; HRDC domain protein; DEAD-like helicase YP_003189600.1 KEGG: yps:YPTB1690 hypothetical protein YP_003189602.1 KEGG: glo:Glov_3490 protein export chaperone SecB YP_003189604.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003189605.1 PFAM: Domain of unknown function DUF1848; KEGG: ppd:Ppro_0347 hypothetical protein YP_003189606.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: xau:Xaut_3952 DNA binding domain-containing protein YP_003189607.1 PFAM: LrgA family protein; KEGG: eca:ECA2828 hypothetical protein YP_003189608.1 PFAM: LrgB family protein; KEGG: tcx:Tcr_1938 LrgB-like protein YP_003189609.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: ilo:IL0694 DNA-binding transcriptional regulator AsnC YP_003189610.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: dal:Dalk_2920 cobalamin B12-binding domain protein YP_003189611.1 TIGRFAM: methyltransferase cognate corrinoid protein; PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; KEGG: geo:Geob_2541 cobalamin B12-binding domain protein YP_003189612.1 PFAM: Monomethylamine methyltransferase MtmB; Contains pyrrolysine YP_003189613.1 PFAM: ferredoxin; KEGG: sit:TM1040_1226 ferredoxin YP_003189614.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: wpi:WPa_1006 threonyl-tRNA synthetase YP_003189615.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dat:HRM2_15240 BioB2 YP_003189616.1 PFAM: protein of unknown function DUF201; KEGG: abu:Abu_2250 ATP-grasp domain-containing protein YP_003189617.1 KEGG: rsk:RSKD131_3009 alcohol dehydrogenase GroES domain protein YP_003189618.1 KEGG: dat:HRM2_15230 hypothetical protein YP_003189619.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: sfu:Sfum_0727 ammonium transporter YP_003189620.1 PFAM: nitrogen regulatory protein P-II; KEGG: lhk:LHK_01236 GlnB YP_003189623.1 PFAM: protein of unknown function DUF45; KEGG: avi:Avi_0018 hypothetical protein YP_003189624.1 PFAM: protein of unknown function DUF1648; KEGG: mmr:Mmar10_2918 hypothetical protein YP_003189625.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bsu:BSU33790 hypothetical protein YP_003189626.1 TIGRFAM: spore cortex-lytic enzyme; PFAM: cell wall hydrolase SleB; Peptidoglycan- binding domain 1 protein; KEGG: bar:GBAA2748 spore cortex-lytic enzyme prepeptide YP_003189627.1 TIGRFAM: germination protein YpeB; PFAM: Propeptide PepSY amd peptidase M4; KEGG: bha:BH1632 hypothetical protein YP_003189628.1 PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class V; KEGG: bha:BH3350 hypothetical protein YP_003189629.1 KEGG: gsu:GSU1729 phenylacetate-CoA ligase YP_003189630.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB YP_003189631.1 TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: geo:Geob_2794 indolepyruvate ferredoxin oxidoreductase, alpha subunit YP_003189632.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: glo:Glov_1857 indolepyruvate ferredoxin oxidoreductase YP_003189633.1 KEGG: nmu:Nmul_A0328 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain-containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain-containing protein; PAC repeat-containing protein; PAS domain-containing protein YP_003189635.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: dvl:Dvul_2284 two component, sigma54 specific, Fis family transcriptional regulator YP_003189636.1 KEGG: dvu:DVUA0087 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain-containing protein YP_003189637.1 PFAM: Domain of unknown function DUF1934; KEGG: bsu:BSU37340 hypothetical protein YP_003189638.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_003189639.1 KEGG: asa:ASA_3656 hypothetical protein YP_003189640.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_003189641.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bsu:BSU37130 two-component response regulator YP_003189643.1 class II aldolase; catalyzes the formation of fructose 1,6-bisphosphate from dihydroxyacetone phosphate and glyceraldehyde 3-phosphate YP_003189644.1 KEGG: geo:Geob_0911 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_003189645.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_003189646.1 PFAM: Peptidase M23; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: hypothetical protein YP_003189647.1 PFAM: Radical SAM domain protein; KEGG: gme:Gmet_2730 radical SAM family protein YP_003189648.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: ilo:IL2462 ribosomal protein L31 YP_003189649.1 PFAM: protein of unknown function DUF1385; KEGG: gme:Gmet_0379 hypothetical protein YP_003189650.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_003189651.1 KEGG: gsu:GSU3103 HemK family modification methylase; TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small YP_003189652.1 PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; KEGG: bha:BH2262 modulation of CheA activity in response to attractants (chemotaxis protein) YP_003189655.1 PFAM: Radical SAM domain protein; KEGG: nar:Saro_3029 radical SAM family protein YP_003189656.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: TPR domain-containing protein YP_003189657.1 KEGG: geo:Geob_2630 tetratricopeptide TPR_2 repeat protein YP_003189658.1 TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: bha:BH3784 UDP-N-acetylglucosamine 1- carboxyvinyltransferase YP_003189659.1 PFAM: protein of unknown function DUF163; KEGG: bha:BH4007 SPOUT methyltransferase superfamily protein YP_003189660.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0113 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003189661.1 PFAM: Nitrate reductase gamma subunit; KEGG: ppd:Ppro_1535 nitrate reductase, gamma subunit YP_003189662.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: ppd:Ppro_1534 hypothetical protein YP_003189663.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: dat:HRM2_22050 DsrC YP_003189664.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase; KEGG: sfu:Sfum_4044 cobyrinic acid a,c-diamide synthase YP_003189665.1 KEGG: dal:Dalk_4301 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region YP_003189666.1 KEGG: dat:HRM2_42390 DsrB2; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein YP_003189667.1 PFAM: Dissimilatory sulfite reductase D; KEGG: dvl:Dvul_2530 dissimilatory sulfite reductase B YP_003189668.1 PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Sel1 domain protein repeat- containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3772 TPR repeat-containing protein YP_003189669.1 KEGG: dal:Dalk_4306 protein of unknown function UPF0153 YP_003189671.1 KEGG: dps:DP1096 hypothetical protein YP_003189672.1 TIGRFAM: regulatory protein, FmdB family; KEGG: dal:Dalk_1639 regulatory protein, FmdB family YP_003189674.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase YP_003189675.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003189677.1 KEGG: bsu:BSU13530 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain-containing protein YP_003189678.1 KEGG: baa:BA_0613 ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; DNA polymerase III delta; SMART: AAA ATPase YP_003189679.1 PFAM: conserved hypothetical protein; KEGG: dal:Dalk_1999 hypothetical protein YP_003189680.1 KEGG: bsu:BSU00210 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein YP_003189681.1 TIGRFAM: pro-sigmaK processing inhibitor BofA; PFAM: sigmaK-factor processing regulatory BofA; KEGG: bar:GBAA0024 sigma-k factor processing regulatory protein BofA YP_003189682.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_003189683.1 KEGG: bsu:BSU00240 hypothetical protein YP_003189685.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: bar:GBAA4172 lysine decarboxylase YP_003189686.1 KEGG: geo:Geob_2152 dTMP kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase YP_003189687.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: geo:Geob_2151 DNA polymerase III, delta prime subunit YP_003189688.1 PFAM: PSP1 domain protein; KEGG: baa:BA_0620 hypothetical protein YP_003189689.1 PFAM: protein of unknown function DUF972; KEGG: bsu:BSU00330 DNA replication intiation control protein YabA YP_003189690.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bha:BH0049 hypothetical protein YP_003189691.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bsu:BSU00370 transcriptional regulator YP_003189692.1 TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); aminoacyl-tRNA synthetase class Ia; KEGG: bha:BH0053 methionyl-tRNA synthetase YP_003189693.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: baa:BA_0627 TatD related DNase YP_003189694.1 KEGG: scl:sce0214 cob(I)yrinic acid a,c-diamide adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_003189695.1 PFAM: 3D domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bsu:BSU00400 hypothetical protein YP_003189697.1 KEGG: baa:BA_0629 ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase YP_003189698.1 PFAM: protein of unknown function DUF458; KEGG: bsu:BSU14110 hypothetical protein YP_003189699.1 TIGRFAM: sporulation peptidase YabG; PFAM: peptidase U57 YabG; KEGG: bha:BH0058 hypothetical protein YP_003189700.1 KEGG: dat:HRM2_43210 hypothetical protein YP_003189701.1 TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: bar:GBAA4841 hypothetical protein YP_003189702.1 PFAM: protein of unknown function DUF169; KEGG: sfu:Sfum_3174 hypothetical protein YP_003189704.1 KEGG: dal:Dalk_3067 CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type YP_003189705.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: sfu:Sfum_3256 2-hydroxyglutaryl-CoA dehydratase, D-component YP_003189707.1 KEGG: zinc finger protein ; K10696 E3 ubiquitin- protein ligase BRE1 YP_003189709.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003189710.1 PFAM: beta-lactamase domain protein; KEGG: gsu:GSU2769 metallo-beta-lactamase family protein YP_003189711.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_3640 phosphate ABC transporter, ATP- binding protein YP_003189712.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sat:SYN_00058 ABC-type phosphate transport system, permease component YP_003189713.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vsa:VSAL_I2119 phosphate ABC transporter, inner membrane component YP_003189714.1 TIGRFAM: phosphate binding protein; KEGG: vch:VCA0070 phosphate ABC transporter, periplasmic phosphate-binding protein YP_003189715.1 KEGG: hypothetical protein YP_003189716.1 PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein YP_003189717.1 TIGRFAM: YD repeat protein; PFAM: Carbohydrate-binding CenC domain protein; YD repeat-containing protein; KEGG: baa:BA_1645 CBD_6, cellulose binding domain YP_003189719.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA6749 transposase YP_003189720.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003189724.1 KEGG: avi:Avi_3476 hypothetical protein YP_003189727.1 KEGG: bar:GBAA2202 IS110 family transposase orfA YP_003189728.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003189729.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: bar:GBAA1094 wall-associated protein, putative YP_003189730.1 KEGG: bha:BH2521 transposase (21) YP_003189732.1 KEGG: aci:ACIAD2783 hypothetical protein YP_003189733.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: pca:Pcar_0129 Rhs family protein YP_003189735.1 KEGG: mxa:MXAN_7292 hypothetical protein YP_003189736.1 KEGG: pca:Pcar_0788 hypothetical protein YP_003189737.1 PFAM: protein of unknown function UPF0150; HicB family protein; KEGG: noc:Noc_2743 hypothetical protein YP_003189738.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: bsu:BSU39230 cell wall-associated protein precursor (CWBP200, 105, 62) YP_003189741.1 PFAM: helix-turn-helix domain protein; CI repressor; SMART: helix-turn-helix domain protein; KEGG: bsu:BSU12510 transcriptional regulator YP_003189742.1 PFAM: peptidase M56 BlaR1; KEGG: swp:swp_3950 TonB YP_003189743.1 PFAM: Penicillinase repressor; KEGG: spl:Spea_3208 CopY family transcriptional regulator YP_003189744.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dat:HRM2_06850 TatA YP_003189745.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dal:Dalk_4186 sec-independent protein translocase, TatC subunit YP_003189746.1 KEGG: sat:SYN_01370 iron only hydrogenase large subunit; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; 4Fe-4S ferredoxin iron- sulfur binding domain protein YP_003189747.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ade:Adeh_2007 4Fe-4S ferredoxin, iron-sulfur binding protein YP_003189748.1 PFAM: Polysulphide reductase NrfD; KEGG: sus:Acid_4205 polysulphide reductase, NrfD YP_003189749.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: tbd:Tbd_2651 transcriptional regulator YP_003189750.1 TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0844 hydrogenases, Fe-only YP_003189751.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0845 NADH dehydrogenase (quinone) YP_003189752.1 KEGG: dat:HRM2_16520 NADP-reducing hydrogenase, subunit B YP_003189753.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dat:HRM2_16530 sensory signal transduction histidine kinase (ATPase domain protein) YP_003189754.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: sfu:Sfum_0846 NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_003189755.1 KEGG: dat:HRM2_16550 iron-sulfur binding hydrogenase YP_003189756.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: dat:HRM2_16550 iron-sulfur binding hydrogenase YP_003189757.1 PFAM: ATP-binding region ATPase domain protein; KEGG: dat:HRM2_16560 RsbW2 YP_003189758.1 KEGG: dat:HRM2_16570 hypothetical protein YP_003189759.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_0841 biotin synthase YP_003189760.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_003189761.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: sfu:Sfum_1843 small GTP-binding protein YP_003189762.1 PFAM: fumarate lyase; KEGG: sfu:Sfum_1842 aspartate ammonia-lyase YP_003189763.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: acr:Acry_3575 IS605 family transposase OrfB YP_003189764.1 KEGG: bsu:BSU17680 thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: thymidylate synthase YP_003189766.1 PFAM: Resolvase domain; Recombinase; KEGG: dsh:Dshi_0396 recombinase YP_003189767.1 KEGG: dat:HRM2_43210 hypothetical protein YP_003189769.1 PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: hypothetical protein YP_003189771.1 PFAM: conserved hypothetical protein; KEGG: sfu:Sfum_2790 conserved hypothetical protein 103 YP_003189772.1 KEGG: hypothetical protein YP_003189773.1 KEGG: bsu:BSU18610 hypothetical protein YP_003189774.1 PFAM: protein of unknown function DUF606; KEGG: ppd:Ppro_0036 hypothetical protein YP_003189775.1 PFAM: zinc/iron permease; KEGG: mca:MCA2417 ZIP zinc transporter family protein YP_003189776.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bsu:BSU14040 hypothetical protein YP_003189777.1 KEGG: baa:BA_0633 4-diphosphocytidyl-2-C-methyl-D- erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_003189778.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: gur:Gura_4161 GntR family transcriptional regulator YP_003189779.1 KEGG: net:Neut_1101 hypothetical protein YP_003189780.1 PFAM: SpoVG family protein; KEGG: bha:BH0064 regulatory protein SpoVG YP_003189781.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_003189782.1 KEGG: bar:GBAA0049 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003189783.1 KEGG: bha:BH1264 hypothetical protein YP_003189784.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: bha:BH0067 50S ribosomal protein L25/general stress protein Ctc YP_003189785.1 KEGG: baa:BA_0639 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003189786.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: dat:HRM2_17730 channel protein (hemolysin III family protein) YP_003189787.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: baa:BA_0817 DEAD/DEAH box helicase YP_003189790.1 KEGG: bsu:BSU00550 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; helicase domain protein; TRCF domain protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein YP_003189791.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gsu:GSU2429 peptidyl-prolyl cis-trans isomerase domain-containing protein YP_003189792.1 TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: baa:BA_0642 hypothetical protein predicted by GeneMark YP_003189794.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: baa:BA_0644 tetrapyrrole (Corrin/Porphyrin) Methylases YP_003189795.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: bha:BH1309 non-specific DNA-binding protein II (HB) (HU) YP_003189796.1 PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: bha:BH0073 hypothetical protein YP_003189797.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: gur:Gura_1714 SpoIID/LytB domain-containing protein YP_003189798.1 TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: bha:BH0074 hypothetical protein YP_003189799.1 TIGRFAM: spore cortex biosynthesis protein YabQ; KEGG: bar:GBAA0058 hypothetical protein YP_003189800.1 PFAM: Septum formation initiator; KEGG: bha:BH0076 cell-division initiation protein (septum formation) YP_003189801.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: bsu:BSU00630 hypothetical protein YP_003189802.1 PFAM: Ppx/GppA phosphatase; KEGG: mxa:MXAN_5759 phosphatase, Ppx/GppA family YP_003189803.1 KEGG: bar:GBAA0061 stage II sporulation protein E; TIGRFAM: stage II sporulation protein E; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein YP_003189804.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: sat:SYN_02776 tRNA(Ile)-lysidine synthetase YP_003189805.1 KEGG: baa:BA_0654 peptidase_M41, peptidase family M41; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003189806.1 KEGG: YNK1; Nucleoside diphosphate kinase, catalyzes the transfer of gamma phosphates from nucleoside triphosphates, usually ATP, to nucleoside diphosphates by a mechanism that involves formation of an autophosphorylated enzyme in-TRUNCATED-; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_003189807.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: fthS; formate-dihydrofolate ligase ; K01938 formate--tetrahydrofolate ligase YP_003189808.1 KEGG: dat:HRM2_21770 transposase (IS4 family protein) YP_003189809.1 PFAM: protein of unknown function DUF134; KEGG: dat:HRM2_31170 hypothetical protein YP_003189810.1 KEGG: ppd:Ppro_3312 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003189811.1 KEGG: bha:BH0093 dihydropteroate synthase (dihydropteroate pyrophosphorylase); TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003189812.1 TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; KEGG: baa:BA_0662 dihydroneopterin aldolase YP_003189813.1 KEGG: baa:BA_0663 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase (HPPK); TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK YP_003189814.1 PFAM: Radical SAM domain protein; KEGG: bha:BH2808 spore photoproduct lyase YP_003189815.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: sat:SYN_02774 putative cytoplasmic protein YP_003189816.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_003189817.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_003189818.1 KEGG: bsu:BSU22410 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase YP_003189819.1 PFAM: BioY protein; KEGG: baa:BA_0023 BioY family YP_003189820.1 KEGG: baa:BA_2078 biotin/lipoate A/B protein ligase family; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn- helix type 11 domain protein; biotin protein ligase domain protein YP_003189821.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: gur:Gura_0439 regulatory protein, ArsR YP_003189822.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: gme:Gmet_1986 pantothenate kinase YP_003189823.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: bha:BH0097 nitrogen regulation transcriptional regulator YP_003189825.1 PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: ade:Adeh_2305 dehydrogenase-like YP_003189826.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: transcription elongation factor YP_003189827.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: bha:BH0098 lysyl-tRNA synthetase YP_003189828.1 PFAM: Firmicute transcriptional repressor of class III stress genes; KEGG: bsu:BSU00830 transcriptional regulator YP_003189829.1 PFAM: UvrB/UvrC protein; KEGG: bsu:BSU00840 modulation of CtsR repression YP_003189830.1 PFAM: ATP:guanido phosphotransferase; KEGG: bha:BH0102 ATP:guanido phosphotransferase YP_003189831.1 PFAM: ATPase AAA-2 domain protein; UvrB/UvrC protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: bha:BH0103 class III stress response-related ATPase YP_003189832.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_003189833.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_003189835.1 PFAM: transcription factor CarD; KEGG: sat:SYN_00997 CarD-like transcriptional regulator YP_003189836.1 PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; KEGG: baa:BA_0673 hypothetical protein YP_003189837.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_003189838.1 KEGG: gur:Gura_4164 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase YP_003189839.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: bha:BH0109 glutamyl-tRNA synthetase YP_003189840.1 TIGRFAM: serine O-acetyltransferase; KEGG: baa:BA_0677 serine O-acetyltransferase YP_003189841.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_003189842.1 PFAM: ribonuclease III; SMART: ribonuclease III; KEGG: bha:BH0112 hypothetical protein YP_003189843.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bha:BH0113 tRNA/rRNA methyltransferase YP_003189844.1 PFAM: protein of unknown function DUF901; KEGG: bha:BH0114 hypothetical protein YP_003189845.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003189846.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_003189847.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_003189848.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_003189849.1 KEGG: bsu:BSU01010 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; SMART: NGN domain protein YP_003189850.1 KEGG: bsu:BSU01020 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11 YP_003189851.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_003189852.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_003189853.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: bha:BH0122 50S ribosomal protein L7/L12 YP_003189854.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_003189855.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_003189856.1 KEGG: bsu:BSU01090 putative ribosomal protein L7Ae- like YP_003189857.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_003189858.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: bha:BH0130 30S ribosomal protein S7 YP_003189859.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: gsu:GSU2860 elongation factor G YP_003189860.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_003189861.1 TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: bha:BH0133 30S ribosomal protein S10 YP_003189862.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_003189863.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_003189864.1 PFAM: Ribosomal protein L25/L23; KEGG: rbo:A1I_02045 50S ribosomal protein L23 YP_003189865.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_003189866.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: bha:BH0138 30S ribosomal protein S19 YP_003189867.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: bha:BH0139 50S ribosomal protein L22 YP_003189868.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_003189869.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_003189870.1 one of the stabilizing components for the large ribosomal subunit YP_003189871.1 PFAM: ribosomal protein S17; KEGG: gme:Gmet_0635 30S ribosomal protein S17 YP_003189872.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: bha:BH0144 50S ribosomal protein L14 YP_003189873.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_003189874.1 PFAM: ribosomal protein L5; KEGG: bha:BH0146 50S ribosomal protein L5 YP_003189875.1 PFAM: ribosomal protein S14; KEGG: dvl:Dvul_1752 30S ribosomal protein S14 YP_003189876.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_003189877.1 PFAM: ribosomal protein L6; KEGG: bha:BH0149 50S ribosomal protein L6 YP_003189878.1 binds 5S rRNA along with protein L5 and L25 YP_003189879.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_003189880.1 TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: baa:BA_0711 ribosomal protein L30p/L7e YP_003189881.1 late assembly protein YP_003189882.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_003189883.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: bha:BH0156 methionine aminopeptidase YP_003189884.1 KEGG: bha:BH0157 hypothetical protein YP_003189885.1 KEGG: bha:BH0158 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein YP_003189886.1 TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: bsu:BSU01400 50S ribosomal protein L36 YP_003189887.1 PFAM: ribosomal protein S13; KEGG: geo:Geob_3602 ribosomal protein S13 YP_003189888.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_003189889.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_003189890.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_003189891.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: pca:Pcar_0729 50S ribosomal protein L17 YP_003189892.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00209 ABC-type cobalt transport system, ATPase component YP_003189893.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU01460 cobalt transporter ATP-binding subunit YP_003189894.1 PFAM: cobalt transport protein; KEGG: baa:BA_0724 cobalt transport protein YP_003189895.1 KEGG: bsu:BSU01480 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_003189896.1 TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: abo:ABO_0576 50S ribosomal protein L13 YP_003189897.1 forms a direct contact with the tRNA during translation YP_003189898.1 KEGG: bha:BH0239 germination specific N- acetylmuramoyl-L-alanine amidase; TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003189899.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sat:SYN_02198 lysine efflux protein YP_003189900.1 PFAM: AMMECR1 domain protein; Extradiol ring- cleavage dioxygenase class III protein subunit B; KEGG: glo:Glov_0529 AMMECR1 domain protein YP_003189901.1 PFAM: Radical SAM domain protein; KEGG: gme:Gmet_1006 radical SAM family protein YP_003189902.1 PFAM: Rhomboid family protein; KEGG: dal:Dalk_3454 rhomboid family protein YP_003189903.1 KEGG: dat:HRM2_33640 putative SAM-dependent methyltransferase YP_003189904.1 PFAM: extracellular solute-binding protein family 5; KEGG: wsu:WS1160 oligopeptide binding protein YP_003189905.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce4301 peptide ABC transporter, permease protein YP_003189906.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_0870 binding-protein-dependent transport systems inner membrane component YP_003189907.1 KEGG: noc:Noc_0936 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003189908.1 PFAM: ferric-uptake regulator; KEGG: bha:BH1396 FUR family transcriptional regulator YP_003189909.1 PFAM: periplasmic solute binding protein; KEGG: dds:Ddes_1008 periplasmic solute binding protein YP_003189910.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pag:PLES_58961 zinc transport protein ZnuC YP_003189911.1 PFAM: ABC-3 protein; KEGG: dds:Ddes_1010 ABC-3 protein YP_003189912.1 PFAM: permease; KEGG: bsu:BSU03250 hypothetical protein YP_003189913.1 PFAM: Protein of unknown function DUF1980; KEGG: baa:BA_2274 hypothetical protein YP_003189914.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: swd:Swoo_3483 cobalamin synthesis protein P47K YP_003189917.1 PFAM: protein of unknown function UPF0066; KEGG: dal:Dalk_5286 protein of unknown function UPF0066 YP_003189918.1 KEGG: dol:Dole_2510 cobyrinic acid ac-diamide synthase YP_003189919.1 PFAM: extracellular solute-binding protein family 5; KEGG: wsu:WS1160 oligopeptide binding protein YP_003189920.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL110455 putative substrate-binding component of ABC transporter YP_003189921.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS1158 hypothetical protein YP_003189922.1 KEGG: tbd:Tbd_1668 oligopeptidee ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003189923.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bha:BH0571 oligopeptide ABC transporter ATP- binding protein YP_003189924.1 KEGG: reh:H16_B1125 ABC-type transporter, ATPase component: PepT family; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003189925.1 TIGRFAM: nickel ABC transporter, permease subunit NikC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0569 nickel transport system (permease) YP_003189926.1 TIGRFAM: nickel ABC transporter, permease subunit NikB; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: avi:Avi_7614 nickel ABC transporter permease subunit NikB YP_003189927.1 TIGRFAM: nickel ABC transporter, periplasmic nickel- binding protein; PFAM: extracellular solute-binding protein family 5; KEGG: dvm:DvMF_2402 nickel ABC transporter, periplasmic nickel-binding protein YP_003189928.1 PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: msu:MS0467 SmtA protein YP_003189929.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_B1962 ABC efflux pump, fused ATPase and inner membrane subunits YP_003189930.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bch:Bcen2424_4081 ABC transporter, transmembrane region, type 1 YP_003189931.1 alkyl hydroperoxidase; catalyze the reduction of hydrogen peroxide to water and the reduction of alkyl hydroperoxides to the corresponding alcohols YP_003189932.1 KEGG: pca:Pcar_0880 hypothetical protein YP_003189934.1 KEGG: dal:Dalk_3879 transposase-like protein YP_003189935.1 PFAM: extracellular solute-binding protein family 5; KEGG: bar:GBAA4729 solute-binding family 5 protein YP_003189936.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pha:PSHAa2199 hypothetical protein YP_003189937.1 PFAM: O-methyltransferase family 2; KEGG: sus:Acid_0820 hydroxyneurosporene-O- methyltransferase YP_003189938.1 PFAM: extracellular solute-binding protein family 5; KEGG: bha:BH0031 oligopeptide ABC transporter (oligopeptide-binding protein) YP_003189939.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dat:HRM2_46890 hypothetical protein YP_003189940.1 KEGG: bha:BH3910 hypothetical protein YP_003189941.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0568 nickel transport system (permease) YP_003189942.1 TIGRFAM: nickel ABC transporter, permease subunit NikC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0569 nickel transport system (permease) YP_003189943.1 KEGG: avi:Avi_5352 ABC transporter nucleotide binding/ATPase protein (oligopeptide); TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003189944.1 KEGG: bja:blr1357 peptide ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003189945.1 KEGG: baa:BA_0545 domain of unknown function DUF25; TIGRFAM: methionine-R-sulfoxide reductase; peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Methionine sulfoxide reductase A YP_003189946.1 KEGG: hypothetical protein YP_003189948.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pla:Plav_0951 ECF subfamily RNA polymerase sigma-24 factor YP_003189951.1 PFAM: transposase IS4 family protein; KEGG: shn:Shewana3_3655 IS4 family transposase YP_003189953.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bha:BH0397 sensory histidine kinase DcuS YP_003189954.1 PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B YP_003189956.1 PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: gme:Gmet_2697 LytR/AlgR family transcriptional regulator YP_003189960.1 PFAM: IstB domain protein ATP-binding protein; KEGG: sat:SYN_00397 ATP binding protein YP_003189961.1 KEGG: xau:Xaut_0512 preprotein translocase, SecA subunit YP_003189965.1 PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: aba:Acid345_3291 transcriptional regulator, LytR/AlgR family YP_003189967.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: ent:Ent638_3378 signal transduction histidine kinase regulating citrate/malate metabolism YP_003189969.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: dat:HRM2_08730 NifD1 YP_003189970.1 PFAM: NifH/frxC-family protein; oxidoreductase/nitrogenase component 1; KEGG: dal:Dalk_0725 NifH/FrxC-family protein YP_003189972.1 PFAM: S-layer domain protein; Propeptide PepSY amd peptidase M4; KEGG: bar:GBAA_pXO1_0124 S-layer protein, (pXO1-90) YP_003189973.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: pha:PSHAa1040 hypothetical protein YP_003189974.1 KEGG: sme:SMa0545 hypothetical protein YP_003189975.1 KEGG: conserved hypothetical protein YP_003189976.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: rfe:RF_0827 DNA-damage-inducible protein J YP_003189978.1 PFAM: transposase IS200-family protein; KEGG: acr:Acry_3301 transposase IS200-family protein YP_003189979.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003189982.1 TIGRFAM: cell wall/surface repeat protein; PFAM: protein of unknown function DUF291; S-layer domain protein; KEGG: hypothetical protein YP_003189983.1 PFAM: helix-turn-helix- domain-containing protein AraC type; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: scl:sce7020 AraC family transcriptional regulator YP_003189986.1 KEGG: hypothetical protein YP_003189989.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003189990.1 PFAM: S-layer domain protein; Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: baa:BA_1469 SLH, S-layer homology domain YP_003189991.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: sfu:Sfum_3444 flavin reductase domain protein, FMN-binding YP_003189992.1 PFAM: helix-turn-helix HxlR type; KEGG: ppd:Ppro_1109 HxlR family transcriptional regulator YP_003189993.1 KEGG: vha:VIBHAR_05301 citrate lyase ligase; TIGRFAM: cytidyltransferase-related domain protein; PFAM: Citrate lyase ligase domain protein; SMART: Citrate lyase ligase domain protein YP_003189994.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bar:GBAA1753 RNA polymerase factor sigma-70 YP_003189996.1 PFAM: protein of unknown function DUF990; KEGG: scl:sce6748 hypothetical protein YP_003189997.1 KEGG: aav:Aave_2072 putative ABC transporter permease protein YP_003189998.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce6750 ABC transporter, ATP-binding protein YP_003189999.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: afw:Anae109_0117 cell shape determining protein MreB YP_003190000.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvu:VV1_0837 ABC-type oligopeptide transport system, ATPase component YP_003190001.1 KEGG: dde:Dde_1182 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003190002.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bar:GBAA4731 oligopeptide ABC transporter, oligopeptide-binding protein YP_003190003.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: noc:Noc_2185 ABC transporter, inner membrane subunit YP_003190004.1 PFAM: extracellular solute-binding protein family 5; KEGG: bha:BH1796 nickel ABC transporter (nickel- binding protein) YP_003190005.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: net:Neut_1733 methyltransferase type 11 YP_003190006.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dps:DP1497 transcriptional regulator YP_003190007.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dvm:DvMF_1917 heavy metal translocating P- type ATPase YP_003190008.1 KEGG: asu:Asuc_1537 hypothetical protein YP_003190010.1 PFAM: transposase IS200-family protein; KEGG: acr:Acry_3301 transposase IS200-family protein YP_003190011.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003190012.1 KEGG: ngk:NGK_1933 putative phage associated protein YP_003190014.1 PFAM: Domain of unknown function DUF1801; KEGG: gur:Gura_3522 hypothetical protein YP_003190015.1 KEGG: sus:Acid_6254 hypothetical protein YP_003190016.1 PFAM: regulatory protein MerR; KEGG: hpa:HPAG1_0202 putative transposase OrfA YP_003190017.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB YP_003190018.1 KEGG: maq:Maqu_3375 prevent-host-death family protein YP_003190019.1 KEGG: shn:Shewana3_3655 IS4 family transposase YP_003190020.1 KEGG: yen:YE0510A hypothetical protein YP_003190022.1 KEGG: bsu:BSU07580 two-component sensor histidine kinase YP_003190024.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppd:Ppro_1999 hypothetical protein YP_003190026.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pca:Pcar_0192 molybdopterin oxidoreductase/precorrin-4 methylase YP_003190028.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB YP_003190029.1 PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: TPR domain-containing protein YP_003190030.1 PFAM: Radical SAM domain protein; KEGG: cbg:CbuG_1165 radical SAM superfamily protein YP_003190032.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: sat:SYN_00084 multimeric flavodoxin YP_003190033.1 PFAM: transposase IS200-family protein; KEGG: plu:plu4158 IS200 family transposase YP_003190034.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: dal:Dalk_5081 transport system permease protein YP_003190035.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_3057 ATP-binding component of citrate-dependent iron (III) transport protein YP_003190036.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dds:Ddes_1510 cyclopropane-fatty-acyl- phospholipid synthase YP_003190037.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bha:BH1808 two-component response regulator YP_003190038.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bar:GBAA5105 sensor histidine kinase YP_003190039.1 PFAM: VanZ family protein; KEGG: bar:GBAA0962 hypothetical protein YP_003190040.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: wsu:WS0721 penicillin-binding protein YP_003190041.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: avi:Avi_7347 ABC transporter membrane spanning protein (sugar) YP_003190042.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sml:Smlt3250 putative sugar transporter, permease protein YP_003190043.1 KEGG: bsu:BSU33260 hypothetical protein YP_003190044.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bha:BH1140 sugar ABC transportor ATP-binding protein YP_003190045.1 PFAM: extracellular solute-binding protein family 1; KEGG: hypothetical protein YP_003190048.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bha:BH0263 RNA polymerase sigma factor SigW YP_003190052.1 KEGG: pfo:Pfl01_1606 substrate-binding region of ABC-type glycine betaine transport system YP_003190053.1 PFAM: IstB domain protein ATP-binding protein; KEGG: maq:Maqu_3709 IstB ATP binding domain- containing protein YP_003190055.1 KEGG: rsq:Rsph17025_3830 hypothetical protein YP_003190057.1 KEGG: wpi:WPa_0972 putative reverse transcriptase YP_003190058.1 KEGG: bar:GBAA2786 glycine betaine/L-proline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain-containing protein; SMART: AAA ATPase; CBS domain-containing protein YP_003190059.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_0733 binding-protein-dependent transport systems inner membrane component YP_003190060.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bsu:BSU03000 glycine betaine ABC transporter (glycine betaine-binding protein) YP_003190061.1 PFAM: cation transporter; KEGG: bsu:BSU13500 hypothetical protein YP_003190062.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: bha:BH2663 potassium uptake protein YP_003190063.1 PFAM: regulatory protein TetR; KEGG: tgr:Tgr7_0301 transcriptional regulator, TetR family YP_003190064.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tdn:Suden_0535 secretion protein HlyD YP_003190065.1 PFAM: acriflavin resistance protein; KEGG: nis:NIS_0076 RND efflux transporter YP_003190066.1 KEGG: hha:Hhal_0784 transposase, IS4 family protein YP_003190067.1 KEGG: similar to predicted protein YP_003190068.1 KEGG: hypothetical protein YP_003190069.1 KEGG: bar:GBAA3129 hypothetical protein YP_003190070.1 KEGG: Hypothetical protein CBG03185 YP_003190071.1 PFAM: Domain of unknown function DUF1835; KEGG: bar:GBAA2625 hypothetical protein YP_003190072.1 PFAM: ferric-uptake regulator; KEGG: vok:COSY_0678 negative regulator of ferric iron uptake YP_003190073.1 KEGG: bph:Bphy_0035 peptide deformylase YP_003190074.1 KEGG: pca:Pcar_1582 hypothetical protein YP_003190075.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_3511 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003190076.1 KEGG: bha:BH3300 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_003190077.1 PFAM: methylenetetrahydrofolate reductase; KEGG: dol:Dole_2330 methylenetetrahydrofolate reductase (NAD(P)H) YP_003190078.1 PFAM: TipAS antibiotic-recognition domain protein; regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: bar:GBAA5200 transcriptional activator TipA, putative YP_003190079.1 PFAM: regulatory protein TetR; KEGG: sfu:Sfum_3090 transcriptional regulator, TetR family YP_003190080.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: mno:Mnod_0192 isoprenylcysteine carboxyl methyltransferase YP_003190081.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0568 nickel transport system (permease) YP_003190082.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0569 nickel transport system (permease) YP_003190083.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0350 oligopeptide ABC transporter ATP- binding protein YP_003190084.1 KEGG: aha:AHA_3428 oligopeptide transport ATP- binding protein AppF; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003190085.1 PFAM: extracellular solute-binding protein family 5; KEGG: bha:BH0567 nickel transport system (nickel- binding protein) YP_003190086.1 PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: msu:MS0467 SmtA protein YP_003190087.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sat:SYN_01564 phospholipid-lipopolysaccharide ABC transporter YP_003190088.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: aba:Acid345_2371 ABC transporter, ATPase subunit YP_003190089.1 PFAM: copper amine oxidase domain protein; KEGG: prw:PsycPRwf_1367 putative outer membrane adhesin like proteiin YP_003190090.1 PFAM: periplasmic binding protein; KEGG: dal:Dalk_3523 periplasmic binding protein YP_003190092.1 PFAM: Methyltransferase type 11; Methionine biosynthesis MetW protein; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: dvu:DVU0101 UbiE/COQ5 family methlytransferase YP_003190093.1 SMART: regulatory protein ArsR; KEGG: abo:ABO_1703 ArsR family regulatory protein YP_003190095.1 PFAM: ABC-2 type transporter; KEGG: ppd:Ppro_1264 ABC-2 type transporter YP_003190096.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_1827 ABC transporter related YP_003190097.1 KEGG: sfu:Sfum_2135 precorrin-2 C20- methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003190098.1 PFAM: periplasmic binding protein; KEGG: dps:DP0217 Fe(III) ABC transporter, periplasmic substrate-binding protein YP_003190099.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_0442 ABC transporter related YP_003190100.1 PFAM: transport system permease protein; KEGG: dps:DP0215 Fe(III) ABC-transporter, permease protein YP_003190101.1 PFAM: anaerobic cobalt chelatase; KEGG: plu:plu2989 cobalt chelatase YP_003190102.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003190103.1 KEGG: bar:GBAA3366 putative lipoprotein YP_003190104.1 PFAM: copper amine oxidase domain protein; KEGG: bar:GBAA3367 cell wall anchor domain- containing protein YP_003190105.1 PFAM: cobalt transport protein; KEGG: bar:GBAA3365 ABC transporter permease YP_003190106.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bar:GBAA3364 ABC transporter ATP-binding protein YP_003190107.1 KEGG: bar:GBAA3363 hypothetical protein YP_003190108.1 PFAM: protein of unknown function DUF1232; KEGG: zinc finger protein YP_003190109.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_003190110.1 KEGG: bha:BH2899 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_003190111.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_003190112.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_003190113.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_003190114.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_003190115.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_003190116.1 KEGG: plu:plu4237 hypothetical protein YP_003190117.1 PFAM: Domain of unknown function DUF1836; KEGG: baa:BA_0560 hypothetical protein YP_003190118.1 PFAM: stress protein; KEGG: bsu:BSU02910 hypothetical protein YP_003190119.1 PFAM: stress protein; KEGG: bsu:BSU02890 hypothetical protein YP_003190120.1 PFAM: stress protein; KEGG: bsu:BSU02910 hypothetical protein YP_003190121.1 PFAM: Integral membrane protein TerC; KEGG: baa:BA_0977 hypothetical protein YP_003190122.1 KEGG: esa:ESA_01791 hypothetical protein YP_003190123.1 KEGG: ecv:APECO1_O1R66 hypothetical protein YP_003190124.1 KEGG: noc:Noc_1005 hypothetical protein YP_003190125.1 KEGG: rru:Rru_A0900 hypothetical protein YP_003190127.1 TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: bha:BH1935 spore germination protein KC YP_003190128.1 PFAM: GerA spore germination protein; KEGG: bsu:BSU03700 germination response to the combination of glucose, fructose, L-asparagine, and KCl YP_003190130.1 PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein YP_003190131.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_003190132.1 KEGG: sat:SYN_01708 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003190133.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: dol:Dole_2037 acetolactate synthase, large subunit, biosynthetic type YP_003190134.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_3022 acetolactate synthase, small subunit YP_003190136.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_003190137.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: sfu:Sfum_2981 acetolactate synthase, large subunit, biosynthetic type YP_003190138.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: sat:SYN_00090 2-isopropylmalate synthase YP_003190139.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_003190140.1 TIGRFAM: 3-isopropylmalate dehydrogenase; 3- isopropylmalate dehydratase, small subunit; PFAM: isocitrate/isopropylmalate dehydrogenase; aconitate hydratase domain protein; KEGG: dvm:DvMF_1794 3-isopropylmalate dehydrogenase YP_003190141.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; KEGG: gsu:GSU1798 alpha-isopropylmalate/homocitrate synthase family transferase YP_003190142.1 KEGG: dat:HRM2_03800 KamA1; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_003190143.1 KEGG: dat:HRM2_03800 KamA1; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_003190144.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_0188 hypothetical protein YP_003190145.1 KEGG: hypothetical protein YP_003190146.1 KEGG: bha:BH3170 hypothetical protein YP_003190147.1 PFAM: protein of unknown function DUF147; KEGG: bsu:BSU01750 hypothetical protein YP_003190148.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_003190149.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_003190151.1 PFAM: protein of unknown function UPF0047; Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: gsu:GSU2631 hypothetical protein YP_003190152.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: pna:Pnap_3733 4-oxalocrotonate tautomerase YP_003190153.1 PFAM: protein of unknown function DUF362; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU0494 iron-sulfur cluster-binding protein YP_003190154.1 PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein; KEGG: pca:Pcar_1197 chemotaxis protein histidine kinase YP_003190155.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: dal:Dalk_3928 CheW protein YP_003190156.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_2944 methyl-accepting chemotaxis sensory transducer YP_003190157.1 KEGG: dal:Dalk_3925 MCP methyltransferase, CheR- type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003190158.1 KEGG: pca:Pcar_1200 chemotactic response regulator/methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver YP_003190159.1 KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain-containing protein YP_003190160.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dal:Dalk_2353 response regulator receiver protein YP_003190161.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003190162.1 SMART: Pyrrolo-quinoline quinone; KEGG: similar to Acyl-CoA synthetase family member 4 (Protein NRPS998) YP_003190163.1 PFAM: histidine triad (HIT) protein; KEGG: pca:Pcar_1504 HIT (HINT, histidine triad) family protein YP_003190164.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: dvm:DvMF_1879 ATP-dependent transcriptional regulator, MalT-like, LuxR family YP_003190165.1 KEGG: gme:Gmet_2500 hypothetical protein YP_003190166.1 PFAM: protein of unknown function DUF291; KEGG: bcm:Bcenmc03_6355 outer membrane autotransporter YP_003190168.1 KEGG: sfu:Sfum_2373 HPr kinase YP_003190169.1 KEGG: sfu:Sfum_3985 hypothetical protein YP_003190170.1 KEGG: sfu:Sfum_3987 peptidase S24, S26A and S26B YP_003190171.1 TIGRFAM: prevent-host-death family protein; KEGG: ccv:CCV52592_2220 prevent-host-death family protein YP_003190172.1 PFAM: plasmid stabilization system; KEGG: ccv:CCV52592_0926 prophage LambdaSa04, RelE/ParE family protein YP_003190174.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: baa:BA_1283 HTH_XRE, helix-turn-helix XRE- family like proteins YP_003190177.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bar:GBAA3546 acetyltransferase YP_003190178.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: hch:HCH_00359 putative protein-S- isoprenylcysteine methyltransferase YP_003190183.1 PFAM: protein of unknown function UPF0157; GCN5- related N-acetyltransferase; KEGG: geo:Geob_2091 protein of unknown function UPF0157 YP_003190184.1 KEGG: bar:GBAA2949 hypothetical protein YP_003190187.1 TIGRFAM: prevent-host-death family protein; KEGG: ccv:CCV52592_2220 prevent-host-death family protein YP_003190188.1 PFAM: plasmid stabilization system; KEGG: ccv:CCV52592_0926 prophage LambdaSa04, RelE/ParE family protein YP_003190189.1 PFAM: protein of unknown function DUF820; KEGG: gur:Gura_3383 hypothetical protein YP_003190190.1 PFAM: histidine triad (HIT) protein; KEGG: ppd:Ppro_1004 histidine triad (HIT) protein YP_003190191.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: bha:BH3863 methyl-accepting chemotaxis protein YP_003190192.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: gur:Gura_4079 MotA/TolQ/ExbB proton channel YP_003190193.1 PFAM: OmpA/MotB domain protein; KEGG: geo:Geob_0639 OmpA/MotB domain protein YP_003190194.1 PFAM: ATP-binding region ATPase domain protein; CheW domain protein; P2 response regulator binding domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; Hpt domain protein; ATP- binding region ATPase domain protein; KEGG: bha:BH2970 two-component sensor histidine kinase involved in chemotaxis YP_003190195.1 PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; KEGG: tbd:Tbd_1615 chemotaxis-specific methylesterase YP_003190197.1 KEGG: neu:NE1223 putative transposase YP_003190198.1 PFAM: response regulator receiver; KEGG: bsu:BSU16420 chemotaxis-specific methylesterase YP_003190199.1 PFAM: CheB methylesterase; KEGG: bav:BAV1679 chemotaxis response regulator protein-glutamate methylesterase YP_003190200.1 PFAM: flagellin domain protein; KEGG: dps:DP2693 flagellin (FliC) YP_003190201.1 KEGG: aca:ACP_3541 hypothetical protein YP_003190203.1 KEGG: RGD1308818; similar to hypothetical protein YP_003190204.1 PFAM: flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook- associated protein 2 domain protein; KEGG: bsu:BSU35340 flagellar capping protein YP_003190205.1 TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: bsu:BSU35330 flagellar protein FliS YP_003190206.1 PFAM: flagellar protein FlaG protein; KEGG: cvi:CV_3877 flagellin protein YP_003190207.1 TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: bsu:BSU35370 carbon storage regulator YP_003190208.1 PFAM: protein of unknown function DUF180; KEGG: bsu:BSU35380 flagellar assembly protein FliW YP_003190209.1 TIGRFAM: flagellar hook-associated protein 3; KEGG: bsu:BSU35400 flagellar hook-associated protein FlgL YP_003190210.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: gur:Gura_4099 flagellar hook-associated protein FlgK YP_003190211.1 PFAM: FlgN family protein; KEGG: bsu:BSU35420 hypothetical protein YP_003190212.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: sdn:Sden_1299 anti-sigma-28 factor, FlgM YP_003190213.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003190216.1 KEGG: neu:NE0492 putative transposase YP_003190218.1 KEGG: plu:plu1643 hypothetical protein YP_003190221.1 KEGG: plu:plu1643 hypothetical protein YP_003190222.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: bha:BH2461 flagellar basal body rod protein FlgB YP_003190223.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: mgm:Mmc1_0267 flagellar basal-body rod protein FlgC YP_003190224.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: pca:Pcar_1193 flagellar hook-basal body complex protein FliE YP_003190225.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_003190226.1 TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: bha:BH2457 flagellar motor switch protein G YP_003190227.1 PFAM: flagellar assembly protein FliH; KEGG: dal:Dalk_0669 flagellar assembly protein FliH YP_003190228.1 KEGG: bha:BH2455 flagellum-specific ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase YP_003190229.1 TIGRFAM: flagellar export protein FliJ; KEGG: glo:Glov_3300 flagellar export protein FliJ YP_003190230.1 PFAM: flagellar hook-length control protein; KEGG: dps:DP2662 polar flagellar hook-length control protein (FliK) YP_003190231.1 PFAM: flagellar hook capping protein; KEGG: bja:bll6853 flagellar basal body rod modification protein YP_003190232.1 TIGRFAM: flagellar operon protein; KEGG: gsu:GSU0418 hypothetical protein YP_003190233.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: bsu:BSU16290 flagellar basal body rod protein FlgG YP_003190234.1 PFAM: flagellar basal body-associated protein FliL; KEGG: nis:NIS_0629 flagellar basal body-associated protein FliL YP_003190235.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: csa:Csal_1963 flagellar motor switch FliN YP_003190236.1 PFAM: flagellar biosynthesis protein FliO; KEGG: vfm:VFMJ11_1975 flagellar protein FliO YP_003190237.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_003190238.1 TIGRFAM: flagellar biosynthetic protein FliQ; type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: pca:Pcar_1165 flagellar biosynthetic protein FliQ YP_003190239.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_003190240.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: bsu:BSU16380 flagellar biosynthesis protein FlhB YP_003190241.1 membrane protein involved in the flagellar export apparatus YP_003190242.1 positive regulator of class III flagellar genes YP_003190243.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: gme:Gmet_0428 NifH/FrxC:cobyrinic acid a,c- diamide synthase YP_003190244.1 PFAM: type IV pilus assembly PilZ; KEGG: bsu:BSU22910 hypothetical protein YP_003190245.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gme:Gmet_0429 sigma 28 (flagella/sporulation) YP_003190247.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: lip:LI0740 flagellar basal body rod protein YP_003190248.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: hhe:HH1081 flagellar basal body rod protein FlgG YP_003190249.1 stimulates methylation of MCP protein; PFAM: CheD family protein; KEGG: bha:BH2433 methylation of methyl-accepting chemotaxis protein YP_003190250.1 KEGG: bha:BH1655 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003190251.1 PFAM: CheC domain protein; KEGG: bha:BH2434 inhibition of CheR-mediated methylation of MCPs YP_003190252.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bha:BH2444 two-component response regulator involved in modulation of flagellar YP_003190253.1 TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: bha:BH2446 flagellar motor switch protein FliM YP_003190254.1 One of three proteins involved in switching the direction of the flagellar rotation YP_003190255.1 PFAM: conserved hypothetical protein; KEGG: pca:Pcar_2153 hypothetical protein YP_003190256.1 PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; KEGG: sus:Acid_7079 hypothetical protein YP_003190257.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: pla:Plav_0660 AbrB family transcriptional regulator YP_003190258.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: bha:BH1679 hypothetical protein YP_003190260.1 KEGG: bsu:BSU00680 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003190261.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_003190262.1 KEGG: gsu:GSU0139 hypothetical protein YP_003190263.1 KEGG: dat:HRM2_39450 GGDEF domain family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; SMART: GGDEF domain-containing protein YP_003190264.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: lhk:LHK_00455 probable membrane permease protein YP_003190265.1 KEGG: hypothetical protein ; K11808 phosphoribosylaminoimidazole carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_003190266.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: gur:Gura_2064 adenylosuccinate lyase YP_003190267.1 KEGG: baa:BA_0863 SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase YP_003190268.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: gme:Gmet_1939 amidophosphoribosyltransferase YP_003190269.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_003190270.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: gsu:GSU1759 phosphoribosylglycinamide formyltransferase YP_003190271.1 involved in de novo purine biosynthesis YP_003190272.1 KEGG: pca:Pcar_2231 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; ATP- dependent carboxylate-amine ligase domain protein ATP- grasp; ATP-grasp domain protein YP_003190275.1 KEGG: mgm:Mmc1_1045 putative transposase YP_003190277.1 KEGG: hhe:HH0277 hypothetical protein YP_003190279.1 KEGG: dps:DP2264 hypothetical protein YP_003190280.1 KEGG: pol:Bpro_2745 putative transposase YP_003190281.1 TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: bsu:BSU06580 hypothetical protein YP_003190282.1 KEGG: bha:BH3584 ATP phosphoribosyltransferase regulatory subunit; TIGRFAM: histidyl-tRNA synthetase 2; PFAM: tRNA synthetase class II (G H P and S) YP_003190283.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_003190284.1 PFAM: Resolvase domain; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: xfm:Xfasm12_1564 hypothetical protein YP_003190285.1 KEGG: bsu:BSU34910 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase YP_003190286.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: noc:Noc_2777 histidinol-phosphate aminotransferase YP_003190287.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dsh:Dshi_0794 imidazoleglycerol-phosphate dehydratase YP_003190288.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_003190289.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_003190290.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_003190291.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; MazG nucleotide pyrophosphohydrolase; KEGG: bsu:BSU34860 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_003190293.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: bsu:BSU06610 ATP-dependent DNA helicase YP_003190294.1 KEGG: bte:BTH_II1411 hypothetical protein YP_003190295.1 PFAM: chemotaxis sensory transducer; KEGG: scl:sce4091 anti-anti sigma factor protein YP_003190296.1 KEGG: bha:BH0649 NAD-dependent DNA ligase LigA; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD- dependent DNA ligase C4-type; NAD-dependent DNA ligase OB- fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; Helix-hairpin-helix DNA-binding class 1 YP_003190297.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: gur:Gura_4325 glutamyl-tRNA(Gln) amidotransferase, C subunit YP_003190298.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003190299.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003190300.1 KEGG: tgr:Tgr7_1990 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain-containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain-containing protein; PAC repeat-containing protein; PAS domain-containing protein YP_003190301.1 TIGRFAM: small, acid-soluble spore protein tlp; KEGG: bsu:BSU18030 small acid-soluble spore protein Tlp YP_003190303.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: sat:SYN_00733 xanthine permease YP_003190304.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: sus:Acid_2715 membrane-bound metal-dependent hydrolase YP_003190305.1 KEGG: dal:Dalk_1620 ribokinase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase YP_003190306.1 TIGRFAM: regulatory protein, FmdB family; KEGG: sfu:Sfum_0594 putative regulatory protein, FmdB family YP_003190308.1 SNP YP_003190309.1 TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: bha:BH1667 3-phosphoshikimate 1- carboxyvinyltransferase YP_003190310.1 KEGG: gme:Gmet_0976 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase YP_003190311.1 TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; KEGG: mgm:Mmc1_2319 3-dehydroquinate synthase YP_003190312.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU07420 hypothetical protein YP_003190313.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bha:BH1936 spore germination protein KB YP_003190314.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: dat:HRM2_45070 hypothetical protein YP_003190315.1 PFAM: protein of unknown function DUF378; KEGG: bha:BH3345 hypothetical protein YP_003190316.1 SMART: nuclear protein SET; KEGG: baa:BA_0175 SET (Su(var)3-9, Enhancer-of- zeste, trithorax) domain YP_003190317.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis YP_003190319.1 PFAM: glycosyl transferase group 1; KEGG: bha:BH1415 hypothetical protein YP_003190320.1 PFAM: Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; transferase hexapeptide repeat containing protein; KEGG: gur:Gura_0855 nucleotidyl transferase YP_003190321.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: geo:Geob_1529 two component, sigma54 specific, transcriptional regulator, Fis family YP_003190322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: geo:Geob_0534 histidine kinase YP_003190323.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: yen:YE2799 hydrogenase 4 subunit B YP_003190324.1 KEGG: xau:Xaut_0167 respiratory-chain NADH dehydrogenase, subunit 1 YP_003190325.1 KEGG: bxe:Bxe_B0327 hypothetical protein YP_003190326.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: efe:EFER_0689 hydrogenase 4, membrane subunit YP_003190327.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: yen:YE2804 hydrogenase-4 component G YP_003190328.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afw:Anae109_3786 NADH ubiquinone oxidoreductase 20 kDa subunit YP_003190331.1 KEGG: dat:HRM2_47010 hypothetical protein YP_003190332.1 PFAM: Domain of unknown function DUF1957; glycoside hydrolase family 57; KEGG: acp:A2cp1_1204 domain of unknown function DUF1957 YP_003190333.1 KEGG: bha:BH1414 hypothetical protein YP_003190334.1 PFAM: CoA-binding domain protein; KEGG: sat:SYN_02520 CoA binding protein YP_003190335.1 KEGG: ott:OTT_1946 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_003190336.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: gsu:GSU1197 RNA methyltransferase YP_003190337.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: bra:BRADO6028 carbon monoxide dehydrogenase, CoxD accessory protein YP_003190338.1 PFAM: VWA containing CoxE family protein; KEGG: pzu:PHZ_c3048 IMP dehydrogenase/GMP reductase:VWA containing CoxE-like protein YP_003190339.1 KEGG: geo:Geob_2603 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; PAS fold-4 domain protein; SMART: AAA ATPase; PAS domain-containing protein YP_003190340.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_003190341.1 tryptophan RNA-binding attenuator protein; binds leader Trp transcript causing transcription termination YP_003190343.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: bar:GBAA4846 acetyl-CoA carboxylase subunit beta YP_003190344.1 KEGG: bha:BH3165 acetyl-CoA carboxylase carboxyltransferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit YP_003190345.1 KEGG: bha:BH3164 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase YP_003190346.1 TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; PEP-utilising protein mobile region; Pyruvate kinase alpha/beta; KEGG: bha:BH3163 pyruvate kinase YP_003190347.1 PFAM: SNARE associated Golgi protein; KEGG: mfa:Mfla_1749 hypothetical protein YP_003190348.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sml:Smlt3123 putative capsular polysaccharide biosynthesis protein YP_003190349.1 KEGG: mfa:Mfla_1367 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003190350.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bar:GBAA5122 glucose-1-phosphate adenylyltransferase YP_003190351.1 KEGG: bha:BH1086 required for glycogen biosynthesis; TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase YP_003190352.1 KEGG: bar:GBAA5120 glycogen synthase; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1 YP_003190353.1 TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: gur:Gura_3859 cysteine synthase A YP_003190354.1 KEGG: baa:BA_0585 hypothetical protein YP_003190355.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sun:SUN_2357 hypothetical protein YP_003190356.1 PFAM: FAD dependent oxidoreductase; HI0933 family protein; KEGG: dar:Daro_3016 FAD dependent oxidoreductase YP_003190357.1 TIGRFAM: phosphoserine phosphatase-like hydrolase; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tmz:Tmz1t_2240 phosphoserine phosphatase SerB YP_003190358.1 KEGG: scl:sce2777 site-specific DNA- methyltransferase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_003190359.1 KEGG: mmw:Mmwyl1_4207 putative signal peptide protein YP_003190360.1 KEGG: reu:Reut_A3355 chromosome segregation ATPase YP_003190362.1 KEGG: vco:VC0395_A2146 IS1004 transposase YP_003190363.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; KEGG: baa:BA_2006 hypothetical protein YP_003190365.1 PFAM: Cupin 2 conserved barrel domain protein; Cupin domain protein; KEGG: ara:Arad_7196 hypothetical protein YP_003190366.1 KEGG: dat:HRM2_21770 transposase (IS4 family protein) YP_003190371.1 KEGG: sml:Smlt1058 putative phage-related protein YP_003190372.1 KEGG: cha:CHAB381_0330 hypothetical protein YP_003190373.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: hypothetical protein YP_003190374.1 KEGG: hypothetical protein LOC687931 YP_003190379.1 PFAM: regulatory protein MerR; Resolvase domain; SMART: regulatory protein MerR; KEGG: xfm:Xfasm12_1564 hypothetical protein YP_003190380.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB YP_003190382.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: glo:Glov_0085 methyltransferase type 11 YP_003190383.1 KEGG: bar:GBAA2741 hypothetical protein YP_003190384.1 KEGG: sfu:Sfum_1326 hypothetical protein YP_003190385.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: aba:Acid345_4527 sigma-24, ECF subfamily YP_003190386.1 KEGG: hypothetical protein YP_003190387.1 PFAM: copper amine oxidase domain protein; KEGG: bar:GBAA4583 TolB domain-containing protein YP_003190388.1 KEGG: hypothetical protein YP_003190389.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB YP_003190391.1 TIGRFAM: prevent-host-death family protein; KEGG: gur:Gura_1262 prevent-host-death family protein YP_003190392.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: hypothetical protein YP_003190393.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: ppd:Ppro_1387 catalase/peroxidase HPI YP_003190394.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: bsu:BSU39230 cell wall-associated protein precursor (CWBP200, 105, 62) YP_003190396.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: bsu:BSU39230 cell wall-associated protein precursor (CWBP200, 105, 62) YP_003190402.1 KEGG: scl:sce3602 hypothetical protein YP_003190403.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mgm:Mmc1_0449 transcriptional regulator, LysR family YP_003190404.1 Contains selenocysteine; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: geo:Geob_2508 selenide, water dikinase YP_003190407.1 KEGG: sat:SYN_00663 putative cytoplasmic protein YP_003190408.1 PFAM: protein of unknown function DUF218; KEGG: ppr:PBPRA1998 putative SanA protein YP_003190409.1 PFAM: protein of unknown function DUF1540 YP_003190410.1 PFAM: peptidase S24 and S26 domain protein; KEGG: ara:Arad_2240 LexA repressor YP_003190411.1 SMART: Rhodanese domain protein; KEGG: abo:ABO_1993 rhodanese domain-containing protein YP_003190412.1 PFAM: nitroreductase; KEGG: ppd:Ppro_2354 nitroreductase YP_003190413.1 KEGG: bxe:Bxe_A1233 hypothetical protein YP_003190414.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: pca:Pcar_1792 phosphomannomutase YP_003190416.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003190417.1 PFAM: transposase IS200-family protein; KEGG: acr:Acry_3301 transposase IS200-family protein YP_003190419.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: gur:Gura_0278 histidine kinase YP_003190421.1 KEGG: gbm:Gbem_3549 phospho-2-dehydro-3- deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003190422.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: afw:Anae109_2039 prephenate dehydratase YP_003190423.1 KEGG: gbm:Gbem_2413 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein YP_003190424.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: neu:NE0014 anthranilate synthase component II YP_003190425.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_003190426.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: dal:Dalk_1436 indole-3-glycerol-phosphate synthase YP_003190427.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dps:DP1623 N-(5'-phosphoribosyl)anthranilate isomerase YP_003190428.1 KEGG: gme:Gmet_2477 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain YP_003190429.1 KEGG: sus:Acid_7885 3-deoxy-D-arabinoheptulosonate- 7-phosphate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003190430.1 TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57 YP_003190431.1 TIGRFAM: CRISPR-associated CXXC_CXXC protein Cst1; KEGG: conserved hypothetical protein YP_003190432.1 TIGRFAM: CRISPR-associated regulatory protein, DevR family; CRISPR-associated autoregulator DevR family; KEGG: mxa:MXAN_7262 fruiting body developmental protein R (CRISPR-associated) YP_003190433.1 TIGRFAM: CRISPR-associated protein Cas5; PFAM: protein of unknown function DUF522 YP_003190434.1 KEGG: pin:Ping_1586 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR- associated HD domain protein; PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase YP_003190435.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: cff:CFF8240_0664 CRISPR-associated protein Cas4 YP_003190436.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: cff:CFF8240_0665 CRISPR-associated protein Cas1 YP_003190437.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: cff:CFF8240_0666 CRISPR-associated protein Cas2 YP_003190438.1 KEGG: bha:BH2521 transposase (21) YP_003190439.1 KEGG: shn:Shewana3_3655 IS4 family transposase YP_003190440.1 PFAM: Stage II sporulation E family protein; Cache domain protein; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; KEGG: glo:Glov_0709 protein serine/threonine phosphatase YP_003190441.1 KEGG: sfu:Sfum_2016 hypothetical protein YP_003190442.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dal:Dalk_0177 histidinol-phosphate aminotransferase YP_003190443.1 KEGG: sfu:Sfum_2014 hypothetical protein YP_003190444.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dat:HRM2_10000 AcsL2 YP_003190445.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: bsu:BSU03570 phosphopantetheinyl transferase YP_003190446.1 KEGG: tdn:Suden_1610 acyl carrier protein (ACP) YP_003190447.1 KEGG: dat:HRM2_37980 putative H(+)-antiporter protein (permease of the major facilitator superfamily) YP_003190448.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_1049 anti-sigma-factor antagonist YP_003190449.1 PFAM: ATP-binding region ATPase domain protein; KEGG: dat:HRM2_02110 predicted anti-sigma F protein (E-sigma F) YP_003190450.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: sfu:Sfum_2012 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_003190451.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bsu:BSU01730 RNA polymerase sigma factor SigW YP_003190453.1 PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU3401 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative YP_003190454.1 PFAM: secretion protein HlyD family protein; KEGG: mno:Mnod_0405 membrane-fusion protein YP_003190455.1 PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mno:Mnod_0406 ABC transporter related YP_003190456.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: met:M446_0091 ABC transporter related YP_003190457.1 PFAM: protein of unknown function nitrogen fixation; KEGG: hypothetical protein YP_003190458.1 KEGG: bba:Bd0347 hypothetical protein YP_003190459.1 PFAM: Radical SAM domain protein; KEGG: nar:Saro_3029 radical SAM family protein YP_003190460.1 PFAM: Radical SAM domain protein; KEGG: nar:Saro_3029 radical SAM family protein YP_003190461.1 PFAM: protein of unknown function nitrogen fixation; KEGG: hypothetical protein YP_003190462.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bph:Bphy_5989 extracellular solute-binding protein YP_003190463.1 PFAM: sodium:dicarboxylate symporter; KEGG: sde:Sde_2908 Na+/H+-dicarboxylate symporters- like YP_003190465.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003190466.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB YP_003190467.1 KEGG: hypothetical protein YP_003190470.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_003190471.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: dps:DP0572 hypothetical protein YP_003190473.1 KEGG: baa:BA_1440 hypothetical protein YP_003190474.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: dds:Ddes_0751 carboxylyase-related protein YP_003190475.1 PFAM: CBS domain-containing protein; SMART: CBS domain-containing protein; KEGG: dol:Dole_0795 CBS domain-containing protein YP_003190476.1 PFAM: CBS domain-containing protein; KEGG: dol:Dole_1341 response regulator receiver protein YP_003190477.1 PFAM: CBS domain-containing protein; KEGG: dol:Dole_0795 CBS domain-containing protein YP_003190479.1 PFAM: protein of unknown function DUF81; KEGG: dvm:DvMF_0703 protein of unknown function DUF81 YP_003190480.1 KEGG: dvm:DvMF_0704 hypothetical protein YP_003190481.1 with AtoC is a member of a two-component regulatory system involved in the transcriptional regulation of the ato genes for acetoacetate metabolism YP_003190482.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_3286 two component, sigma54 specific, transcriptional regulator, fis family YP_003190483.1 PFAM: putative RNA methylase; THUMP domain protein; KEGG: bha:BH1771 hypothetical protein YP_003190485.1 PFAM: amidohydrolase; KEGG: bsu:BSU06560 hypothetical protein YP_003190486.1 KEGG: dal:Dalk_1390 putative two-component sensor histidine kinase/response regulator hybrid protein YP_003190488.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; response regulator receiver; KEGG: gsu:GSU1320 sigma-54 dependent DNA-binding response regulator YP_003190489.1 PFAM: CBS domain-containing protein; KEGG: dol:Dole_0795 CBS domain-containing protein YP_003190490.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: dvl:Dvul_2908 sulfate transporter YP_003190491.1 KEGG: sat:SYN_00077 hypothetical protein YP_003190492.1 PFAM: transcriptional regulator PadR family protein; KEGG: sfu:Sfum_0276 transcriptional regulator, PadR- like family YP_003190493.1 PFAM: protein of unknown function DUF81; KEGG: dvm:DvMF_2812 protein of unknown function DUF81 YP_003190494.1 PFAM: UspA domain protein; KEGG: bsu:BSU39250 hypothetical protein YP_003190497.1 PFAM: protein of unknown function UPF0153; KEGG: sun:SUN_1697 hypothetical protein YP_003190498.1 KEGG: gur:Gura_0879 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003190499.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: gur:Gura_2198 hypothetical protein YP_003190500.1 PFAM: FAD linked oxidase domain protein; KEGG: dps:DP0059 glycolate oxidase subunit (GlcD) YP_003190501.1 KEGG: gsu:GSU3295 hypothetical protein YP_003190502.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: dol:Dole_2381 Na/Pi-cotransporter II-related protein YP_003190503.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: ppr:PBPRA2964 putative undecaprenyl diphosphate synthase YP_003190504.1 PFAM: glycoside hydrolase family 18; Peptidoglycan- binding domain 1 protein; SMART: chitinase II; KEGG: bsu:BSU34020 hypothetical protein YP_003190508.1 KEGG: mmw:Mmwyl1_4371 hypothetical protein YP_003190510.1 KEGG: cha:CHAB381_0330 hypothetical protein YP_003190514.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: bha:BH2877 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) YP_003190515.1 PFAM: ferric-uptake regulator; KEGG: bar:GBAA4313 FUR family transcriptional regulator YP_003190516.1 PFAM: O-methyltransferase family 2; KEGG: dat:HRM2_47060 SAM-dependent methyltransferase YP_003190517.1 KEGG: sat:SYN_01940 phospho-2-dehydro-3- deoxyheptanoate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003190518.1 PFAM: Prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; amino acid-binding ACT domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bha:BH1666 prephenate dehydrogenase YP_003190520.1 PFAM: protein of unknown function DUF81; KEGG: dvm:DvMF_2103 protein of unknown function DUF81 YP_003190521.1 with AtoC is a member of a two-component regulatory system involved in the transcriptional regulation of the ato genes for acetoacetate metabolism YP_003190522.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: elf:LF82_0187 acetoacetate metabolism regulatory protein AtoC YP_003190523.1 PFAM: CBS domain-containing protein; SMART: CBS domain-containing protein; KEGG: dol:Dole_1341 response regulator receiver protein YP_003190524.1 PFAM: CBS domain-containing protein; SMART: CBS domain-containing protein; KEGG: dol:Dole_1341 response regulator receiver protein YP_003190525.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: bha:BH0876 methyl-accepting chemotaxis protein YP_003190526.1 PFAM: nitrogen regulatory protein P-II; KEGG: afw:Anae109_4397 nitrogen regulatory protein P-II YP_003190527.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dal:Dalk_3033 ammonium transporter YP_003190528.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: sfu:Sfum_0727 ammonium transporter YP_003190529.1 PFAM: nitrogen regulatory protein P-II; KEGG: gur:Gura_2229 nitrogen regulatory protein P- II YP_003190530.1 PFAM: protein of unknown function DUF939; KEGG: bar:GBAA0529 putative lipoprotein YP_003190531.1 PFAM: pyruvate carboxyltransferase; KEGG: pca:Pcar_2110 trans-homoaconitate synthase YP_003190532.1 KEGG: sfu:Sfum_1019 nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_003190533.1 PFAM: nitrogen regulatory protein P-II; KEGG: dal:Dalk_1521 nitrogen regulatory protein P- II YP_003190534.1 PFAM: nitrogen regulatory protein P-II; KEGG: dvl:Dvul_3092 nitrogen regulatory protein P- II YP_003190535.1 KEGG: dvl:Dvul_3093 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_003190536.1 KEGG: dvm:DvMF_2617 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_003190537.1 TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; KEGG: dal:Dalk_1517 nitrogenase MoFe cofactor biosynthesis protein NifE YP_003190538.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: dal:Dalk_1516 nitrogenase YP_003190539.1 PFAM: Radical SAM domain protein; KEGG: wsu:WS1397 hypothetical protein YP_003190540.1 KEGG: mgm:Mmc1_0047 ferredoxin, 2Fe-2S YP_003190541.1 KEGG: rpc:RPC_4680 hypothetical protein YP_003190542.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: dvm:DvMF_1754 diguanylate phosphodiesterase YP_003190543.1 KEGG: bha:BH1508 asparagine synthetase; TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003190545.1 KEGG: dal:Dalk_2633 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003190546.1 KEGG: dal:Dalk_5194 hypothetical protein YP_003190547.1 catalyzes the formation of L-histidinol from L-histidinol phosphate YP_003190548.1 PFAM: glutamine amidotransferase class-I; KEGG: sfu:Sfum_0596 glutamine amidotransferase class-I YP_003190549.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: glo:Glov_3595 efflux transporter, RND family, MFP subunit YP_003190550.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ank:AnaeK_3059 ABC transporter-related protein YP_003190551.1 PFAM: protein of unknown function DUF214; KEGG: sat:SYN_01995 export ABC transporter permease protein YP_003190552.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003190553.1 PFAM: protein of unknown function DUF124; KEGG: ank:AnaeK_1430 protein of unknown function DUF124 YP_003190554.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: bha:BH2576 cell division protein MraZ YP_003190555.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: gsu:GSU3077 S-adenosyl-methyltransferase MraW YP_003190557.1 KEGG: bha:BH2572 stage V sporulation protein (soprulation specific penicillin-binding protein) (spore cortex); TIGRFAM: stage V sporulation protein D; PFAM: penicillin-binding protein transpeptidase; PASTA domain-containing protein; Penicillin-binding protein dimerisation domain; SMART: PASTA domain-containing protein YP_003190559.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: bsu:BSU15180 UDP-N-acetylmuramoylalanyl-D- glutamate--2,6-diaminopimelate ligase YP_003190560.1 TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: bar:GBAA0246 UDP-N-acetylmuramoylalanyl-D- glutamyl-2,6-diaminopimelate--D-alany L-D-alanyl ligase YP_003190561.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_003190562.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_003190563.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: bar:GBAA4050 stage V sporulation protein E YP_003190564.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_003190565.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_003190566.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_003190567.1 TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: gbm:Gbem_3707 UDP-N-acetylglucosamine 1- carboxyvinyltransferase YP_003190568.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; cell division protein FtsQ; KEGG: glo:Glov_0666 polypeptide-transport- associated domain protein FtsQ-type YP_003190569.1 PFAM: protein of unknown function DUF881; KEGG: bsu:BSU15250 hypothetical protein YP_003190570.1 PFAM: protein of unknown function DUF881; KEGG: bha:BH2562 hypothetical protein YP_003190571.1 PFAM: protein of unknown function DUF1290; KEGG: bsu:BSU15270 small basic protein YP_003190572.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: scl:sce1667 cell division protein FtsA YP_003190573.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_003190574.1 TIGRFAM: sigma-E processing peptidase SpoIIGA; PFAM: peptidase U4 sporulation factor SpoIIGA; KEGG: bar:GBAA4044 sporulation sigma-E factor processing peptidase YP_003190575.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_003190576.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_003190577.1 TIGRFAM: stage II sporulation protein R; KEGG: bsu:BSU36970 required for processing of pro- sigma-E YP_003190578.1 TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein; KEGG: bha:BH2552 hypothetical protein YP_003190579.1 PFAM: ATP-cone domain protein; KEGG: bsu:BSU29000 transcriptional regulator NrdR YP_003190580.1 KEGG: cla:Cla_0048 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; SMART: Hedgehog/intein hint domain protein YP_003190581.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: dds:Ddes_1073 anaerobic ribonucleoside- triphosphate reductase activating protein YP_003190582.1 PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bbr:BB3018 putative peptidase YP_003190583.1 TIGRFAM: regulatory protein, FmdB family; KEGG: dvl:Dvul_1274 FmdB family regulatory protein YP_003190584.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: sat:SYN_00166 metallo-beta-lactamase protein YP_003190585.1 PFAM: protein of unknown function DUF152; KEGG: bsu:BSU15370 hypothetical protein YP_003190586.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bha:BH3157 two-component response regulator involved in phosphate regulation YP_003190587.1 KEGG: gur:Gura_1571 multi-sensor signal transduction histidine kinase; TIGRFAM: phosphate regulon sensor kinase PhoR; PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain-containing protein; histidine kinase HAMP region domain protein YP_003190588.1 KEGG: dvm:DvMF_0881 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003190589.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: rru:Rru_A0602 phosphate uptake regulator, PhoU YP_003190591.1 PFAM: alanine racemase domain protein; KEGG: gsu:GSU2544 hypothetical protein YP_003190592.1 PFAM: protein of unknown function DUF552; KEGG: bsu:BSU15390 hypothetical protein YP_003190593.1 KEGG: sat:SYN_02197 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_003190594.1 PFAM: protein of unknown function YGGT; KEGG: gsu:GSU0866 YGGT family protein YP_003190595.1 PFAM: RNA-binding S4 domain protein; KEGG: bsu:BSU15410 hypothetical protein YP_003190596.1 PFAM: DivIVA family protein; KEGG: bar:GBAA4035 cell-division initiation protein DivIVA YP_003190597.1 PFAM: protein of unknown function DUF167; KEGG: gsu:GSU0864 hypothetical protein YP_003190598.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_003190599.1 TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase; KEGG: bsu:BSU30920 hypothetical protein YP_003190600.1 TIGRFAM: spore coat protein, CotS family; KEGG: bsu:BSU30900 spore coat protein YP_003190601.1 PFAM: glycosyl transferase group 1; KEGG: bsu:BSU30910 spore coat protein YP_003190602.1 KEGG: hhe:HH0003 hypothetical protein YP_003190603.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vsp:VS_II0206 ABC transporter: transmembrane protein; phosphate uptake YP_003190604.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sat:SYN_00058 ABC-type phosphate transport system, permease component YP_003190607.1 PFAM: methyltransferase small; KEGG: dde:Dde_2955 hypothetical protein YP_003190609.1 KEGG: hypothetical protein YP_003190610.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bar:GBAA3930 stage III sporulation protein E YP_003190612.1 PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein YP_003190613.1 PFAM: manganese containing catalase; KEGG: ent:Ent638_3129 catalase YP_003190615.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB YP_003190617.1 PFAM: protein of unknown function DUF322; KEGG: bha:BH2786 hypothetical protein YP_003190618.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_003190619.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_003190620.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_003190621.1 KEGG: bsu:BSU04320 hypothetical protein YP_003190622.1 KEGG: bsu:BSU04320 hypothetical protein YP_003190623.1 PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; KEGG: scl:sce1459 MutS-like mismatch repair protein, ATPases YP_003190624.1 KEGG: bha:BH0549 hypothetical protein YP_003190625.1 PFAM: protein of unknown function DUF208; KEGG: dal:Dalk_0393 protein of unknown function DUF208 YP_003190626.1 KEGG: geo:Geob_2318 hypothetical protein YP_003190627.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: gme:Gmet_0850 stage II sporulation-related protein YP_003190628.1 TIGRFAM:S-adenosylmethionine/tRNA- ribosyltransferase -isomerase; PFAM: Queuosine biosynthesis protein; KEGG: bar:GBAA4648 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_003190629.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_003190630.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pla:Plav_3035 preprotein translocase, YajC subunit YP_003190631.1 KEGG: dal:Dalk_2318 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003190632.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_003190633.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_003190635.1 TIGRFAM: sporulation protein, yteA family; PFAM: zinc finger DksA/TraR C4-type; KEGG: bar:GBAA5114 DksA/TraR family DNA-binding protein YP_003190636.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: gbm:Gbem_3895 cation diffusion facilitator family transporter YP_003190637.1 Heat shock-induced YP_003190638.1 KEGG: bha:BH2370 outer spore coat protein YP_003190639.1 TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase; KEGG: bsu:BSU30920 hypothetical protein YP_003190640.1 KEGG: bha:BH2370 outer spore coat protein YP_003190641.1 PFAM: metallophosphoesterase; KEGG: afw:Anae109_3838 metallophosphoesterase YP_003190642.1 PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: smd:Smed_4563 putative carbamoyl phosphate synthase large subunit YP_003190643.1 PFAM: WbqC-like family protein; KEGG: bur:Bcep18194_A3335 hypothetical protein YP_003190644.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sus:Acid_0283 DegT/DnrJ/EryC1/StrS aminotransferase YP_003190645.1 PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; KEGG: bba:Bd2484 UDP-3-O-[3-hydroxymyristoyl] N- acetylglucosamine deacetylase YP_003190646.1 KEGG: bsu:BSU13780 hypothetical protein YP_003190647.1 KEGG: fph:Fphi_1259 hypothetical protein YP_003190648.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mag:amb0126 dehydrogenase and related protein YP_003190649.1 KEGG: hypothetical protein YP_003190654.1 PFAM: protein of unknown function UPF0153 YP_003190655.1 KEGG: dol:Dole_0381 hypothetical protein YP_003190656.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: sus:Acid_6714 cobalamin (vitamin B12) biosynthesis CbiM protein YP_003190657.1 KEGG: pca:Pcar_0061 ABC-type transport system, permease component YP_003190658.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dol:Dole_2020 cobalt ABC transporter, inner membrane subunit CbiQ YP_003190659.1 with CbiNQ forms the ABC transporter for cobalt import YP_003190660.1 KEGG: ngk:NGK_0735 hypothetical protein YP_003190661.1 PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; KEGG: pca:Pcar_2206 UDP-N-acetylmuramyl pentapeptide synthase YP_003190662.1 PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: saz:Sama_0765 cobyric acid synthase YP_003190663.1 KEGG: bha:BH0240 ATP-binding Mrp/Nbp35 family protein YP_003190664.1 PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: bsu:BSU08970 serine protein kinase YP_003190665.1 TIGRFAM: sporulation protein YhbH; PFAM: protein of unknown function DUF444; KEGG: bha:BH1031 hypothetical protein YP_003190666.1 PFAM: SpoVR family protein; KEGG: bsu:BSU09400 involved in spore cortex synthesis (stage V sporulation) YP_003190667.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bar:GBAA3296 MATE efflux family protein YP_003190668.1 KEGG: met:M446_0096 hypothetical protein YP_003190669.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: baa:BA_1876 hypothetical protein YP_003190670.1 KEGG: baa:BA_0729 amidase_3, N-acetylmuramoyl-L- alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003190671.1 required for 70S ribosome assembly YP_003190672.1 catalyzes branch migration in Holliday junction intermediates YP_003190673.1 PFAM: small acid-soluble spore protein alpha/beta type; KEGG: baa:BA_2488 SASP, small, acid-soluble spore proteins, alpha/beta type YP_003190674.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_003190675.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: gur:Gura_2499 putative methyltransferase YP_003190676.1 KEGG: aba:Acid345_0567 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003190677.1 KEGG: similar to CG3064-PB YP_003190678.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: bsu:BSU29470 acetate kinase YP_003190679.1 TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; KEGG: ppd:Ppro_1290 phosphate acetyltransferase YP_003190680.1 TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: bar:GBAA4138 hypothetical protein YP_003190681.1 PFAM: protein of unknown function DUF177; KEGG: gsu:GSU1598 hypothetical protein YP_003190682.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: sfu:Sfum_1369 ribosomal protein L32 YP_003190683.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria YP_003190684.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_003190685.1 KEGG: gur:Gura_1875 3-oxoacyl-(acyl-carrier- protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III; chalcone and stilbene synthase domain protein YP_003190686.1 TIGRFAM: enoyl-(acyl-carrier-protein) reductase II; PFAM: 2-nitropropane dioxygenase NPD; KEGG: dal:Dalk_5025 2-nitropropane dioxygenase NPD YP_003190687.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: bha:BH2492 acyl-carrier-protein S- malonyltransferase YP_003190688.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bha:BH2491 3-oxoacyl-(acyl-carrier protein) reductase YP_003190689.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: asu:Asuc_2000 acyl carrier protein YP_003190690.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: bsu:BSU11340 3-oxoacyl-(acyl carrier protein) synthase II YP_003190691.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_003190692.1 KEGG: bar:GBAA3985 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_003190693.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate YP_003190694.1 KEGG: pca:Pcar_2170 aIF-2BI family translation initiation factor; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_003190695.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_003190696.1 PFAM: class II aldolase/adducin family protein; KEGG: pca:Pcar_3030 L-fuculose-1-phosphate aldolase YP_003190697.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sfu:Sfum_2961 amidohydrolase YP_003190698.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: sus:Acid_5493 PfpI family intracellular peptidase YP_003190700.1 PFAM: transposase IS200-family protein; KEGG: acr:Acry_3301 transposase IS200-family protein YP_003190701.1 PFAM: aminotransferase class-III; KEGG: hch:HCH_06028 ornithine/acetylornithine aminotransferase YP_003190702.1 PFAM: putative helix-turn-helix protein YlxM/p13 family protein; Sigma-70 region 4 type 2; Bacterio-opsin activator HTH domain protein; KEGG: bha:BH2485 hypothetical protein YP_003190703.1 KEGG: bsu:BSU15980 signal recognition particle-like (SRP) component; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_003190704.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_003190705.1 KEGG: sfu:Sfum_3040 hypothetical protein YP_003190706.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: bsu:BSU16020 16S rRNA processing protein YP_003190707.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_003190708.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_003190709.1 KEGG: dat:HRM2_27790 LepB; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_003190710.1 PFAM: GTP-binding protein HSR1-related; KEGG: bha:BH2476 hypothetical protein YP_003190711.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_003190712.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: ndhC; NADH dehydrogenase D3 YP_003190713.1 KEGG: dvm:DvMF_1594 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003190714.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: NADH:ubiquinone oxidoreductase 30.4kD subunit; K03936 NADH dehydrogenase (ubiquinone) Fe-S protein 3 YP_003190715.1 catalyzes the transfer of electrons from NADH to ubiquinone YP_003190716.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sfu:Sfum_0203 respiratory-chain NADH dehydrogenase, subunit 1 YP_003190717.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP1316 NADH dehydrogenase, subunit 8 YP_003190718.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: aba:Acid345_1292 NADH- ubiquinone/plastoquinone oxidoreductase, chain 6 YP_003190719.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: gur:Gura_4234 NADH-ubiquinone oxidoreductase, chain 4L YP_003190720.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; KEGG: baa:BA_0388 oxidored_q1, NADH- Ubiquinone/plastoquinone (complex I), various chains YP_003190721.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sfu:Sfum_1936 proton-translocating NADH- quinone oxidoreductase, chain M YP_003190722.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: glo:Glov_3125 proton-translocating NADH- quinone oxidoreductase, chain N YP_003190723.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dat:HRM2_12320 TrxB YP_003190725.1 PFAM: protein of unknown function UPF0102; KEGG: sat:SYN_00772 endonuclease YP_003190726.1 PFAM: protein of unknown function DUF161; KEGG: sat:SYN_01478 hypothetical protein YP_003190727.1 KEGG: gur:Gura_4031 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003190728.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_2104 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003190729.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sfu:Sfum_0212 DNA protecting protein DprA YP_003190730.1 KEGG: bha:BH2467 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003190731.1 KEGG: bha:BH2466 tRNA (uracil-5-)-methyltransferase Gid; TIGRFAM: gid protein; PFAM: glucose-inhibited division protein A YP_003190732.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bar:GBAA3969 site-specific tyrosine recombinase XerC YP_003190733.1 heat shock protein involved in degradation of misfolded proteins YP_003190734.1 heat shock protein involved in degradation of misfolded proteins YP_003190735.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_003190737.1 KEGG: gur:Gura_1915 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_003190738.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: hsm:HSM_0813 periplasmic solute binding protein YP_003190739.1 KEGG: xop:PXO_01241 hypothetical protein YP_003190740.1 PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_0577 cobyrinic acid ac-diamide synthase YP_003190741.1 PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_0576 cobyrinic acid ac-diamide synthase YP_003190742.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dol:Dole_0581 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_003190744.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bar:GBAA0262 ABC transporter ATP-binding protein YP_003190745.1 PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: mxa:MXAN_7387 chitinase, class I YP_003190746.1 PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: mxa:MXAN_7387 chitinase, class I YP_003190747.1 PFAM: Resolvase domain; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: xfm:Xfasm12_1564 hypothetical protein YP_003190748.1 PFAM: Coat F domain protein; KEGG: bha:BH3888 hypothetical protein YP_003190749.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: baa:BA_0642 hypothetical protein predicted by GeneMark YP_003190751.1 PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: baa:BA_1740 PLDc, phospholipase D YP_003190752.1 PFAM: MscS Mechanosensitive ion channel; KEGG: baa:BA_0584 mechanosensitive ion channel YP_003190753.1 PFAM: Polyprenyl synthetase; KEGG: bsu:BSU22740 heptaprenyl diphosphate synthase component II YP_003190754.1 TIGRFAM: siroheme synthase; KEGG: sat:SYN_02276 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase YP_003190755.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_003190756.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_003190757.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dal:Dalk_4009 uroporphyrin-III C- methyltransferase YP_003190758.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_1225 radical SAM domain-containing protein YP_003190759.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_003190760.1 PFAM: Radical SAM domain protein; KEGG: dat:HRM2_28000 PpqE2 YP_003190761.1 SMART: regulatory protein AsnC/Lrp family; KEGG: dol:Dole_0464 AsnC family transcriptional regulator YP_003190762.1 KEGG: dat:HRM2_05170 putative HTH-type transcriptional regulator YP_003190763.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: glo:Glov_3139 glutamate-1-semialdehyde-2,1- aminomutase YP_003190764.1 PFAM: cyclase family protein; KEGG: gur:Gura_0174 cyclase family protein YP_003190765.1 modulates transcription in response to the NADH/NAD(+) redox state YP_003190766.1 PFAM: protein of unknown function UPF0047; KEGG: sat:SYN_00473 putative cytoplasmic protein YP_003190767.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pla:Plav_1955 ATPase YP_003190769.1 PFAM: VWA containing CoxE family protein; KEGG: rpa:RPA0742 hypothetical protein YP_003190771.1 PFAM: protein of unknown function UPF0153; KEGG: dat:HRM2_07420 hypothetical protein YP_003190772.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_0748 proto-chlorophyllide reductase 57 kD subunit YP_003190774.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dal:Dalk_4371 cobyrinic acid ac-diamide synthase YP_003190775.1 KEGG: rpc:RPC_4498 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_003190776.1 in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex YP_003190777.1 part of a complex that catalyzes the cleavage of acetyl-CoA YP_003190778.1 PFAM: ferredoxin; KEGG: dol:Dole_3100 ferredoxin YP_003190779.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dol:Dole_1488 cobyrinic acid ac-diamide synthase YP_003190780.1 part of a complex that catalyzes the cleavage of acetyl-CoA YP_003190781.1 catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein YP_003190782.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfu:Sfum_1977 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_003190783.1 Contains selenocysteine; PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: sfu:Sfum_1973 methyl-viologen-reducing hydrogenase, delta subunit YP_003190784.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: sfu:Sfum_1972 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_003190785.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_5061 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_003190786.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sfu:Sfum_1970 oxidoreductase FAD/NAD(P)- binding domain protein YP_003190787.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: dps:DP1009 Fe-S oxidoreductase YP_003190788.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dal:Dalk_3265 methyl-viologen-reducing hydrogenase delta subunit YP_003190789.1 KEGG: dal:Dalk_3264 hypothetical protein YP_003190790.1 PFAM: methylenetetrahydrofolate reductase; KEGG: dol:Dole_1151 methylenetetrahydrofolate reductase YP_003190791.1 KEGG: bha:BH3560 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003190792.1 PFAM: protein of unknown function DUF74; KEGG: sil:SPO2021 hypothetical protein YP_003190793.1 TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: bsu:BSU22350 initiation of chromosome replication (DNA synthesis) YP_003190794.1 SMART: AAA ATPase; KEGG: baa:BA_1017 IstB-like ATP binding protein YP_003190795.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_003190796.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: plu:plu2995 cobalt-precorrin-6Y C(5)- methyltransferase YP_003190797.1 TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: geo:Geob_0032 precorrin-6y C5,15- methyltransferase (decarboxylating), CbiE subunit YP_003190798.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: geo:Geob_0033 precorrin-2 C20- methyltransferase YP_003190799.1 KEGG: dps:DP0222 precorrin-4 C11-methyltransferase (CobM); TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003190800.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: gbm:Gbem_3540 cobalamin (vitamin B12) biosynthesis CbiG protein YP_003190801.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: gme:Gmet_0485 cobyric acid synthase CobQ:precorrin-3B C17-methyltransferase region YP_003190802.1 TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: cvi:CV_1562 precorrin-3B C17- methyltransferase YP_003190803.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: dal:Dalk_0445 precorrin-8X methylmutase CbiC/CobH YP_003190804.1 PFAM: cell wall hydrolase SleB; Peptidoglycan- binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bha:BH2879 spore cortex-lytic enzyme YP_003190805.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: baa:BA_0478 transglycosylase YP_003190807.1 KEGG: sfu:Sfum_1719 hypothetical protein YP_003190808.1 KEGG: bar:GBAA3128 hypothetical protein YP_003190812.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dol:Dole_2465 DegT/DnrJ/EryC1/StrS aminotransferase YP_003190813.1 KEGG: hac:Hac_0806 hypothetical protein YP_003190814.1 KEGG: pca:Pcar_0273 hypothetical protein YP_003190816.1 KEGG: baa:BA_0632 SASP, small, acid-soluble spore proteins, alpha/beta type YP_003190818.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_003190819.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: mgm:Mmc1_0977 NAD-dependent epimerase/dehydratase YP_003190820.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; copper amine oxidase domain protein; KEGG: bar:GBAA4372 hypothetical protein YP_003190821.1 PFAM: PAS fold domain protein; KEGG: bha:BH1826 transcriptional activator of the acetoin dehydrogenase operon YP_003190823.1 KEGG: dps:DP0406 ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003190824.1 KEGG: dps:DP0407 hypothetical protein YP_003190825.1 PFAM: Acyl transferase; KR domain protein; Beta- ketoacyl synthase ; short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_3725 polyketide synthase modules and related proteins-like YP_003190826.1 KEGG: plu:plu3560 hypothetical protein YP_003190827.1 KEGG: plu:plu3558 hypothetical protein YP_003190828.1 KEGG: plu:plu3558 hypothetical protein YP_003190829.1 KEGG: plu:plu3558 hypothetical protein YP_003190830.1 PFAM: Radical SAM domain protein; KEGG: dat:HRM2_06230 hypothetical protein YP_003190831.1 PFAM: pentapeptide repeat protein; KEGG: rce:RC1_0668 pentapeptide repeat family protein YP_003190832.1 PFAM: NHL repeat containing protein; KEGG: pna:Pnap_4087 hypothetical protein YP_003190833.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: bsu:BSU27000 hypothetical protein YP_003190834.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_3511 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003190836.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bha:BH1153 two-component response regulator YP_003190837.1 PFAM: histidine kinase A domain protein; ATP- binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; KEGG: bha:BH1154 hypothetical protein YP_003190838.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_003190839.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bar:GBAA4555 hypothetical protein YP_003190840.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; HI0933 family protein; KEGG: bha:BH3571 thioredoxin reductase (NADPH) YP_003190841.1 TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gur:Gura_0655 glyoxalase/bleomycin resistance protein/dioxygenase YP_003190842.1 PFAM: carboxyl transferase; KEGG: sus:Acid_1492 carboxyl transferase YP_003190843.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cjr:CJE1011 oxaloacetate decarboxylase, alpha subunit, putative YP_003190844.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins YP_003190845.1 PFAM: metallophosphoesterase; KEGG: mxa:MXAN_0344 metallophosphoesterase YP_003190847.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: helicase c2; Exonuclease; KEGG: bha:BH1691 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon YP_003190848.1 KEGG: dde:Dde_3524 heterodisulfide reductase, C subunit YP_003190849.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: geo:Geob_3724 CoB--CoM heterodisulfide reductase YP_003190850.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dat:HRM2_22100 HdrL1 YP_003190851.1 KEGG: dde:Dde_1207 heterodisulfide reductase, C subunit YP_003190852.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: geo:Geob_3724 CoB--CoM heterodisulfide reductase YP_003190853.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gur:Gura_3583 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003190854.1 Contains selenocysteine; PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: gur:Gura_3584 methyl-viologen-reducing hydrogenase, delta subunit YP_003190855.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_5062 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003190856.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_1971 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_003190857.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1213 hydrogenase, putative YP_003190858.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: aca:ACP_1893 RNA polymerase sigma-70 factor, ECF family protein YP_003190861.1 KEGG: bha:BH1230 hypothetical protein YP_003190862.1 KEGG: bsu:BSU22780 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I YP_003190863.1 KEGG: baa:BA_2085 hypothetical protein YP_003190864.1 KEGG: sfu:Sfum_1169 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_003190865.1 TIGRFAM: stage V sporulation protein B; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: bar:GBAA4643 stage V sporulation protein B YP_003190866.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: sfu:Sfum_0068 elongation factor G YP_003190867.1 PFAM: protein of unknown function DUF202; KEGG: sfu:Sfum_2754 protein of unknown function DUF202 YP_003190870.1 PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein YP_003190871.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: sat:SYN_01225 sulfite reductase, assimilatory- type YP_003190872.1 PFAM: ribonuclease H; KEGG: sat:SYN_00291 ribonuclease H YP_003190873.1 PFAM: Hsp33 protein; KEGG: bsu:BSU00710 HSP33-like chaperonin YP_003190874.1 KEGG: gsu:GSU1818 cofactor-independent phosphoglycerate mutase; TIGRFAM: proposed homoserine kinase; phosphonopyruvate decarboxylase-related protein; PFAM: metalloenzyme domain protein YP_003190875.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sfu:Sfum_2006 integral membrane sensor signal transduction histidine kinase YP_003190876.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gme:Gmet_3383 two component transcriptional regulator YP_003190877.1 KEGG: sat:SYN_00527 trypsin-like serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003190878.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3013 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_003190879.1 PFAM: Lytic transglycosylase catalytic; KEGG: bsu:BSU11570 hypothetical protein YP_003190881.1 PFAM: transcriptional regulator domain protein; KEGG: baa:BA_0858 trans_reg_C, transcriptional regulatory protein, C terminal YP_003190882.1 KEGG: bha:BH2390 hypothetical protein YP_003190883.1 PFAM: thioesterase superfamily protein; KEGG: sfu:Sfum_0232 uncharacterized domain 1 YP_003190884.1 KEGG: sfu:Sfum_1683 phenylacetate--CoA ligase YP_003190885.1 KEGG: gur:Gura_3275 adenine-specific DNA methylase YP_003190886.1 KEGG: ilo:IL0572 hypothetical protein YP_003190887.1 KEGG: bha:BH0051 hypothetical protein YP_003190888.1 KEGG: bha:BH0052 hypothetical protein YP_003190889.1 PFAM: metallophosphoesterase; KEGG: bha:BH2382 hypothetical protein YP_003190890.1 PFAM: SMC domain protein; KEGG: bha:BH2381 hypothetical protein YP_003190891.1 KEGG: bha:BH2380 hypothetical protein YP_003190892.1 KEGG: bha:BH2379 hypothetical protein YP_003190895.1 KEGG: bha:BH1399 hypothetical protein YP_003190896.1 PFAM: Protein of unknown function CGGC region; KEGG: dal:Dalk_2266 protein of unknown function CGGC region YP_003190897.1 KEGG: mxa:MXAN_4905 putative polyglutamate synthase CapA YP_003190901.1 KEGG: sat:SYN_01838 putative cytoplasmic protein YP_003190903.1 PFAM: TRAG family protein; KEGG: mlo:mlr9261 component of type IV secretion system YP_003190904.1 SMART: RNA binding S1 domain protein; KEGG: mpt:Mpe_A2244 30S ribosomal protein S1 YP_003190908.1 KEGG: bar:GBAA_pXO1_0099 hypothetical protein YP_003190910.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: bsu:BSU28040 DNA repair protein RadC YP_003190911.1 KEGG: dat:HRM2_19390 hypothetical protein YP_003190913.1 PFAM: integrase family protein; KEGG: plu:plu1152 hypothetical protein YP_003190914.1 PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicase; KEGG: mgm:Mmc1_1355 helicase domain protein YP_003190915.1 KEGG: mgm:Mmc1_1354 hypothetical protein YP_003190916.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: mgm:Mmc1_1353 DEAD/DEAH box helicase domain protein YP_003190917.1 KEGG: mgm:Mmc1_1352 UvrD/REP helicase YP_003190918.1 KEGG: bbt:BBta_3311 XRE family transcriptional regulator YP_003190919.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003190920.1 KEGG: abu:Abu_0110 hypothetical protein YP_003190921.1 KEGG: abu:Abu_0109 hypothetical protein YP_003190922.1 KEGG: dsh:Dshi_1918 modification methylase, putative YP_003190923.1 PFAM: protein of unknown function DUF262; KEGG: pca:Pcar_0794 hypothetical protein YP_003190924.1 KEGG: pcr:Pcryo_2512 hypothetical protein YP_003190926.1 KEGG: vfm:VFMJ11_A0743 hypothetical protein YP_003190927.1 KEGG: dat:HRM2_33940 transposase family protein YP_003190928.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: reh:PHG058 putative integrase/recombinase YP_003190929.1 PFAM: integrase family protein; KEGG: dat:HRM2_26350 predicted phage-specific integrase YP_003190930.1 PFAM: integrase family protein; KEGG: avi:Avi_8262 integrase/recombinase YP_003190931.1 PFAM: transposase IS66; KEGG: mgm:Mmc1_2184 transposase IS66 YP_003190932.1 PFAM: IS66 Orf2 family protein; KEGG: dat:HRM2_43710 transposase YP_003190934.1 PFAM: transposase IS4 family protein; KEGG: scl:sce1510 putative transposase YP_003190935.1 PFAM: Radical SAM domain protein; KEGG: bte:BTH_II1706 radical SAM domain-containing protein YP_003190936.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; KEGG: hch:HCH_06999 SNF2 family DNA/RNA helicase YP_003190937.1 SMART: Tetratricopeptide domain protein YP_003190939.1 PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; KEGG: bar:GBAA4272 GntR family transcriptional regulator YP_003190940.1 PFAM: Creatininase; KEGG: rru:Rru_A3729 creatininase YP_003190941.1 KEGG: bha:BH2521 transposase (21) YP_003190943.1 TIGRFAM: DNA binding domain protein, excisionase family YP_003190944.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: hch:HCH_06281 transcriptional regulator YP_003190945.1 PFAM: protein of unknown function DUF955; KEGG: rpe:RPE_2472 protein of unknown function DUF955 YP_003190947.1 PFAM: type III restriction protein res subunit; DNA primase small subunit; SMART: DEAD-like helicase; KEGG: dal:Dalk_3491 type III restriction protein res subunit YP_003190948.1 KEGG: dal:Dalk_4361 Rossmann fold nucleotide- binding protein YP_003190949.1 PFAM: AAA-4 family protein; KEGG: rlt:Rleg2_2458 putative transcriptional regulator YP_003190952.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003190953.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: gbm:Gbem_2040 2-hydroxyglutaryl-CoA dehydratase D-component YP_003190954.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: dvm:DvMF_0997 nitrogen-fixing NifU domain protein YP_003190955.1 KEGG: gsu:GSU2520 (R)-2-hydroxyglutaryl-CoA dehydratase activator; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type YP_003190956.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: pca:Pcar_1392 putative S-adenosylmethionine- dependent methyltransferase YP_003190962.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: abu:Abu_1650 N6 adenine-specific DNA methyltransferase, D12 class YP_003190966.1 PFAM: S-layer domain protein; KEGG: swd:Swoo_0491 outer membrane adhesin like proteiin YP_003190969.1 PFAM: SpoVG family protein; KEGG: bha:BH0064 regulatory protein SpoVG YP_003190971.1 PFAM: peptidase A24A prepilin type IV; KEGG: bsu:BSU28070 DNA-binding protein YP_003190972.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: sat:SYN_01491 flp pilus assembly protein YP_003190973.1 KEGG: dat:HRM2_30920 ParA YP_003190974.1 PFAM: type II secretion system protein E; KEGG: sus:Acid_7399 type II secretion system protein E YP_003190975.1 KEGG: oan:Oant_0727 type II secretion system protein YP_003190976.1 KEGG: rlt:Rleg2_5619 type II secretion system protein YP_003190980.1 KEGG: hypothetical protein YP_003190985.1 KEGG: sfu:Sfum_3819 hypothetical protein YP_003190986.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: net:Neut_0115 DNA-cytosine methyltransferase YP_003190989.1 KEGG: bar:GBAA_pXO2_0008 hypothetical protein YP_003190991.1 KEGG: mxa:MXAN_1821 hypothetical protein YP_003190992.1 PFAM: AIG2 family protein; KEGG: pub:SAR11_1133 hypothetical protein YP_003190996.1 KEGG: hypothetical protein YP_003190999.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat- containing protein YP_003191000.1 KEGG: asa:ASA_P4G102 hypothetical protein YP_003191001.1 PFAM: TRAG family protein; KEGG: pna:Pnap_2530 TraG family protein YP_003191003.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bha:BH3675 MerR family transcriptional regulator YP_003191004.1 PFAM: major facilitator superfamily MFS_1; KEGG: plu:plu4882 hypothetical protein YP_003191005.1 PFAM: ABC transporter related; KEGG: bha:BH0714 excinuclease ABC (subunit A) YP_003191006.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: afw:Anae109_1971 XRE family transcriptional regulator YP_003191007.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: hypothetical protein YP_003191008.1 PFAM: Sigma-70 region 4 type 2; KEGG: ilo:IL1391 RNA polymerase sigma factor YP_003191009.1 PFAM: Resolvase domain; KEGG: acp:A2cp1_0019 resolvase domain protein YP_003191011.1 PFAM: Resolvase domain; Recombinase; KEGG: oan:Oant_1563 resolvase domain protein YP_003191012.1 PFAM: Recombinase; KEGG: mgm:Mmc1_1125 recombinase YP_003191013.1 PFAM: Resolvase domain; Recombinase; KEGG: mgm:Mmc1_2617 resolvase, N-terminal domain YP_003191014.1 PFAM: Resolvase domain; Recombinase; KEGG: wri:WRi_007550 putative cassette chromosome recombinase resolvase, CcrB-like protein YP_003191015.1 KEGG: cha:CHAB381_0330 hypothetical protein YP_003191016.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: ngk:NGK_0307 DNA cytosine methyltransferase M.NgoMIII YP_003191017.1 KEGG: ngk:NGK_0308 restriction endonuclease R.NgoMIII YP_003191018.1 KEGG: abc:ACICU_01349 hypothetical protein YP_003191019.1 PFAM: SEC-C motif domain protein; KEGG: abc:ACICU_01350 SecC motif-containing protein YP_003191021.1 PFAM: SEC-C motif domain protein; KEGG: abb:ABBFA_002518 hypothetical protein YP_003191022.1 PFAM: AAA-4 family protein; KEGG: fta:FTA_0703 ATP-binding transcriptional regulator YP_003191023.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: nmc:NMC0678 putative NmeDIP very-short-patch- repair endonuclease YP_003191024.1 PFAM: AAA-4 family protein; KEGG: she:Shewmr4_3209 putative transcriptional regulator YP_003191026.1 PFAM: helicase domain protein; SMART: helicase domain protein; KEGG: noc:Noc_0545 helicase-like YP_003191027.1 KEGG: dat:HRM2_48970 HigA YP_003191028.1 KEGG: sfu:Sfum_1441 plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein YP_003191030.1 PFAM: UvrD/REP helicase; KEGG: sus:Acid_1693 UvrD/REP helicase YP_003191031.1 KEGG: sus:Acid_1694 hypothetical protein YP_003191032.1 PFAM: UvrD/REP helicase; KEGG: sus:Acid_1695 putative DNA helicase YP_003191033.1 KEGG: dat:HRM2_33940 transposase family protein YP_003191034.1 KEGG: hypothetical protein YP_003191035.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gme:Gmet_1046 iron-containing alcohol dehydrogenase YP_003191036.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dde:Dde_3470 6-phosphogluconate dehydrogenase- like protein YP_003191037.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: ppd:Ppro_0466 rubredoxin-type Fe(Cys)4 protein YP_003191039.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bar:GBAA4777 DNA-binding response regulator YP_003191040.1 KEGG: met:M446_6441 GAF sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold- 4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain-containing protein YP_003191041.1 KEGG: dat:HRM2_41960 hypothetical protein YP_003191042.1 PFAM: Rubrerythrin; KEGG: sfu:Sfum_3220 rubrerythrin YP_003191043.1 TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dal:Dalk_2367 desulfoferrodoxin YP_003191044.1 PFAM: UspA domain protein; KEGG: geo:Geob_3533 UspA domain protein YP_003191045.1 PFAM: Rubrerythrin; KEGG: dvl:Dvul_0832 hypothetical protein YP_003191047.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: ppd:Ppro_0466 rubredoxin-type Fe(Cys)4 protein YP_003191048.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ade:Adeh_4321 histidine kinase YP_003191049.1 PFAM: polysaccharide deacetylase; KEGG: bha:BH0895 polysaccharide deacetylase (nodulation protein NodB) YP_003191050.1 PFAM: Abortive infection protein; KEGG: rbo:A1I_06395 hypothetical protein YP_003191051.1 KEGG: 2-dehydropantoate 2-reductase ; K00606 3- methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_003191053.1 KEGG: mmw:Mmwyl1_1399 addiction module antitoxin YP_003191054.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_3323 secretion protein HlyD YP_003191055.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_7937 ABC transporter related YP_003191056.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: hypothetical protein YP_003191057.1 PFAM: alpha/beta hydrolase fold; KEGG: bsu:BSU10900 hypothetical protein YP_003191058.1 KEGG: sse:Ssed_2865 signal transduction histidine kinase-like protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; Hpt domain protein; Cache domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain-containing protein; histidine kinase HAMP region domain protein YP_003191059.1 KEGG: bha:BH2234 response regulatory protein (sensory transduction system); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; response regulator receiver; SMART: GGDEF domain-containing protein; response regulator receiver YP_003191061.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bar:GBAA3390 DNA-binding protein YP_003191062.1 PFAM: Rh family protein/ammonium transporter; KEGG: neu:NE0448 ammonium transporter YP_003191063.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: pol:Bpro_1286 alcohol dehydrogenase GroES- like YP_003191064.1 KEGG: dat:HRM2_16000 TrpD1; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like YP_003191065.1 KEGG: VIT2; vitellogenin 2 YP_003191066.1 Heat shock-induced YP_003191067.1 KEGG: bsu:BSU13460 hypothetical protein YP_003191069.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3354 ABC transporter related YP_003191070.1 PFAM: ABC-2 type transporter; KEGG: sus:Acid_4640 ABC-2 type transporter YP_003191071.1 KEGG: sfu:Sfum_0087 hypothetical protein YP_003191072.1 PFAM: Radical SAM domain protein; cobalamin B12- binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_3304 radical SAM domain protein YP_003191073.1 PFAM: protein of unknown function DUF362; KEGG: gur:Gura_0351 hypothetical protein YP_003191074.1 KEGG: rsq:Rsph17025_1964 HPr kinase YP_003191076.1 KEGG: sun:SUN_2076 hypothetical protein YP_003191078.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_003191079.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_003191080.1 PFAM: copper amine oxidase domain protein; SMART: chitinase II; KEGG: bsu:BSU05710 hypothetical protein YP_003191081.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: baa:BA_0764 sugar_tr, sugar (and other) transporter YP_003191082.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_003191083.1 TIGRFAM: sulfite reductase, subunit A; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aha:AHA_2575 anaerobic sulfite reductase subunit A YP_003191084.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide YP_003191085.1 TIGRFAM: sulfite reductase, subunit C; PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: ecy:ECSE_P3-0003 anaerobic sulfite reductase subunit C YP_003191086.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB YP_003191087.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: dps:DP1664 assimilatory sulfite reductase YP_003191088.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gme:Gmet_1931 BadM/Rrf2 family transcriptional regulator YP_003191089.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ferredoxin YP_003191090.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_003191091.1 KEGG: dal:Dalk_2588 hypothetical protein YP_003191092.1 PFAM: Radical SAM domain protein; KEGG: rsh:Rsph17029_3720 radical SAM domain- containing protein YP_003191093.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bar:GBAA2531 ABC transporter ATP-binding protein YP_003191094.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: cff:CFF8240_1813 major facilitator superfamily permease YP_003191095.1 KEGG: sfu:Sfum_4098 hypothetical protein YP_003191098.1 PFAM: major facilitator superfamily MFS_1; KEGG: sat:SYN_01218 fosmidomycin resistance protein YP_003191099.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_43390 4Fe-4S iron-sulfur binding protein (ferredoxin) YP_003191100.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dal:Dalk_2314 drug resistance transporter, EmrB/QacA subfamily YP_003191101.1 PFAM: SirA family protein; KEGG: sfu:Sfum_3402 SirA family protein YP_003191102.1 KEGG: dat:HRM2_44840 hypothetical protein YP_003191103.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB YP_003191104.1 KEGG: wri:WRi_010330 RNA-directed DNA polymerase (reverse transcriptase) YP_003191105.1 KEGG: wri:WRi_010330 RNA-directed DNA polymerase (reverse transcriptase) YP_003191106.1 PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2552 transposase IS4 family protein YP_003191107.1 KEGG: baa:BA_2264 asparagine synthase; TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003191108.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0382 ABC transporter ATP-binding protein YP_003191109.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH0383 GntR family transcriptional regulator YP_003191110.1 KEGG: bha:BH0384 hypothetical protein YP_003191111.1 KEGG: pat:Patl_0916 hypothetical protein YP_003191113.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dvm:DvMF_0993 transcriptional regulator, Crp/Fnr family YP_003191114.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: sat:SYN_01225 sulfite reductase, assimilatory- type YP_003191117.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU3187 ferredoxin family protein YP_003191118.1 PFAM: glycosyl transferase group 1; KEGG: sus:Acid_4857 glycosyl transferase, group 1 YP_003191119.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dde:Dde_1138 5-oxopent-3-ene-1,2,5- tricarboxylate decarboxylase YP_003191120.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_003191121.1 KEGG: bpt:Bpet4674 putative octaprenyl-diphosphate synthase YP_003191122.1 TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: bha:BH1650 4-hydroxybenzoate octaprenyltransferase YP_003191123.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gbm:Gbem_0234 radical SAM domain protein YP_003191124.1 PFAM: protein of unknown function DUF178; KEGG: gur:Gura_1828 hypothetical protein YP_003191125.1 PFAM: Radical SAM domain protein; KEGG: glo:Glov_3637 radical SAM domain protein YP_003191126.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_003191127.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein; KEGG: sfu:Sfum_1220 selenocysteine-specific translation elongation factor YP_003191128.1 PFAM: protein of unknown function DUF1657; KEGG: baa:BA_0231 hypothetical protein YP_003191129.1 PFAM: protein of unknown function DUF185; KEGG: glo:Glov_0383 protein of unknown function DUF185 YP_003191130.1 KEGG: sun:SUN_0255 hypothetical protein YP_003191131.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; KEGG: mmw:Mmwyl1_2815 nitrite reductase (NAD(P)H), large subunit YP_003191132.1 KEGG: similar to AGAP012133-PA YP_003191133.1 PFAM: FeoA family protein YP_003191134.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: gme:Gmet_2444 ferrous iron transport protein B YP_003191135.1 PFAM: FeoA family protein YP_003191136.1 PFAM: FeoA family protein; KEGG: ank:AnaeK_3367 FeoA family protein YP_003191137.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: gbm:Gbem_3658 ferrous iron transport protein B YP_003191139.1 KEGG: gsu:GSU2622 HAMP domain/GAF domain/HD domain- containing protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein YP_003191140.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: she:Shewmr4_2995 methyl-accepting chemotaxis sensory transducer YP_003191141.1 KEGG: dal:Dalk_3013 hypothetical protein YP_003191143.1 KEGG: aba:Acid345_1764 membrane protein YP_003191144.1 PFAM: metallophosphoesterase; KEGG: bha:BH2845 diadenosine tetraphosphatase YP_003191146.1 PFAM: membrane protein of unknown function; KEGG: rso:RSc0092 hypothetical protein YP_003191147.1 KEGG: glo:Glov_1089 protein of unknown function UPF0153 YP_003191148.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: gbm:Gbem_2313 rubrerythrin YP_003191149.1 PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: sat:SYN_03842 putative cytoplasmic protein YP_003191150.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dol:Dole_2517 phosphomethylpyrimidine kinase YP_003191151.1 KEGG: dal:Dalk_0685 hydroxyethylthiazole kinase; TIGRFAM: hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase YP_003191152.1 TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: HAD-superfamily hydrolase subfamily IB hypothetical 1; KEGG: azc:AZC_3989 phosphoserine phosphatase YP_003191153.1 PFAM: Propeptide PepSY amd peptidase M4 YP_003191155.1 PFAM: glycosyltransferase 36; putative carbohydrate binding; glycosyltransferase 36 associated; KEGG: ade:Adeh_3184 glycosyltransferase 36 YP_003191156.1 KEGG: nmu:Nmul_A0328 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain-containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain-containing protein; PAC repeat-containing protein; PAS domain-containing protein YP_003191157.1 KEGG: shw:Sputw3181_0672 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain-containing protein; PAS fold domain protein; SMART: GGDEF domain-containing protein; PAS domain-containing protein YP_003191158.1 PFAM: Auxin Efflux Carrier; KEGG: rpc:RPC_4586 auxin efflux carrier YP_003191159.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: dde:Dde_1554 thiamine biosynthesis protein ThiS YP_003191160.1 PFAM: thiazole biosynthesis family protein; KEGG: dde:Dde_1555 thiazole synthase YP_003191161.1 TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: sat:SYN_00439 thiamine biosynthesis protein ThiH YP_003191162.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate YP_003191163.1 KEGG: dvu:DVU2091 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_003191164.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_003191165.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: dol:Dole_2381 Na/Pi-cotransporter II-related protein YP_003191167.1 KEGG: bsu:BSU25130 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2 YP_003191168.1 KEGG: dat:HRM2_49130 hypothetical protein YP_003191169.1 KEGG: hypothetical protein YP_003191171.1 KEGG: viral A-type inclusion protein YP_003191172.1 TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase YP_003191173.1 KEGG: sfu:Sfum_4098 hypothetical protein YP_003191174.1 PFAM: NUDIX hydrolase; KEGG: bha:BH1524 hypothetical protein YP_003191175.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: bha:BH3028 septum formation inhibitor YP_003191176.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: geo:Geob_1010 glycogen/starch synthase, ADP- glucose type YP_003191177.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bha:BH3798 acyl-CoA dehydrogenase YP_003191178.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: bha:BH3100 electron transfer flavoprotein (beta subunit) YP_003191179.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: sat:SYN_02637 electron transfer flavoprotein alpha-subunit YP_003191180.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: sat:SYN_02638 iron-sulphur-binding reductase YP_003191181.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: bha:BH2029 thiolase (acetyl-CoA acetyltransferase) YP_003191182.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: baa:BA_0444 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_003191183.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gsu:GSU1377 3-hydroxybutyryl-CoA dehydratase YP_003191188.1 PFAM: hydrogenase large subunit domain protein; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0725 hydrogenase-like YP_003191189.1 PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: bar:GBAA4599 bifunctional acetaldehyde- CoA/alcohol dehydrogenase YP_003191193.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: lpc:LPC_2177 hypothetical protein YP_003191194.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: rfe:RF_0827 DNA-damage-inducible protein J YP_003191196.1 KEGG: scl:sce6526 hypothetical protein YP_003191198.1 PFAM: protein of unknown function DUF820; KEGG: gur:Gura_3383 hypothetical protein YP_003191199.1 KEGG: bha:BH1193 hypothetical protein YP_003191200.1 KEGG: sat:SYN_02718 HD domain-containing protein YP_003191201.1 PFAM: Fe-S cluster domain protein; KEGG: dat:HRM2_28540 hypothetical protein YP_003191202.1 KEGG: aby:ABAYE3517 hypothetical protein YP_003191203.1 KEGG: dat:HRM2_43250 sensory box histidine kinase/response regulator; PFAM: response regulator receiver; Hpt domain protein; SMART: response regulator receiver YP_003191205.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bar:GBAA4012 cation transporter E1-E2 family ATPase YP_003191206.1 KEGG: hypothetical protein; K11273 chromosome transmission fidelity protein 1 YP_003191207.1 KEGG: mca:MCA1086 hypothetical protein YP_003191209.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dal:Dalk_2372 rubredoxin-type Fe(Cys)4 protein YP_003191210.1 KEGG: hypothetical protein YP_003191213.1 KEGG: baa:BA_2113 MMR_HSR1, GTPase of unknown function YP_003191214.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: sfu:Sfum_1051 protein of unknown function DUF224, cysteine-rich region domain protein YP_003191215.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ppd:Ppro_3327 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003191216.1 KEGG: bha:BH3284 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003191217.1 PFAM: carbonic anhydrase; KEGG: gme:Gmet_1242 carbonic anhydrase YP_003191218.1 PFAM: MgtE intracellular region; CBS domain-containing protein; SMART: CBS domain-containing protein; KEGG: gbm:Gbem_3240 MgtE intracellular region YP_003191219.1 PFAM: natural resistance-associated macrophage protein; KEGG: gbm:Gbem_3239 natural resistance-associated macrophage protein YP_003191221.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: gsu:GSU2149 ArsR family transcriptional regulator YP_003191222.1 TIGRFAM: cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: baa:BA_1177 E1-E2_ATPase, E1-E2 ATPase YP_003191223.1 KEGG: bar:GBAA3597 hypothetical protein YP_003191224.1 PFAM: major facilitator superfamily MFS_1; KEGG: ade:Adeh_2958 major facilitator transporter YP_003191225.1 PFAM: metallophosphoesterase; KEGG: dal:Dalk_3816 metallophosphoesterase YP_003191226.1 KEGG: dal:Dalk_3815 conserved hypothetical protein- like protein YP_003191227.1 PFAM: beta-lactamase domain protein; KEGG: glo:Glov_3463 beta-lactamase domain protein YP_003191229.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sfu:Sfum_2331 exodeoxyribonuclease III Xth YP_003191231.1 KEGG: rpi:Rpic_0025 40-residue YVTN family beta- propeller repeat protein YP_003191232.1 KEGG: dal:Dalk_0344 cycloartenol synthase-like protein YP_003191234.1 KEGG: conserved hypothetical protein YP_003191235.1 KEGG: pag:PLES_50481 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003191236.1 PFAM: protein of unknown function DUF95 transmembrane; KEGG: bha:BH0733 hypothetical protein YP_003191237.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_003191238.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: gur:Gura_1378 alkylhydroperoxidase YP_003191239.1 PFAM: protein of unknown function DUF541; KEGG: mxa:MXAN_7203 putative 28 kDa outer membrane protein YP_003191240.1 KEGG: hypothetical protein YP_003191245.1 KEGG: conserved hypothetical protein YP_003191246.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: bha:BH1545 peptidyl-prolyl cis-trans isomerase B YP_003191247.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: bha:BH0531 hypothetical protein YP_003191248.1 KEGG: gsu:GSU0371 carbohydrate phosphorylase family protein; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003191251.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB YP_003191252.1 KEGG: similar to Liprin-beta-2 (Protein tyrosine phosphatase receptor type f polypeptide-interacting protein-binding protein 2) (PTPRF-interacting protein- binding protein 2) YP_003191254.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bsu:BSU14730 hypothetical protein YP_003191255.1 KEGG: tmz:Tmz1t_0782 Tol-Pal system beta propeller repeat protein TolB YP_003191257.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce7371 ABC-2 type transport system ATP- binding protein YP_003191258.1 KEGG: scl:sce7370 hypothetical protein YP_003191259.1 KEGG: cja:CJA_1583 CRISPR-associated protein, Csm2 family YP_003191260.1 KEGG: bpy:Bphyt_1074 abortive phage resistance protein-like protein YP_003191265.1 PFAM: protein of unknown function DUF188; KEGG: bar:GBAA3063 hypothetical protein YP_003191266.1 TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: pca:Pcar_1211 GTP-binding protein TypA YP_003191268.1 PFAM: CopG domain protein DNA-binding domain protein YP_003191269.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_003191270.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: bsu:BSU27670 involved in spore cortex synthesis (stage V sporulation) YP_003191271.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: sat:SYN_01522 thiamin pyrophosphokinase YP_003191272.1 KEGG: sat:SYN_02192 HD-superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; SMART: metal-dependent phosphohydrolase HD region YP_003191273.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: pca:Pcar_1661 transcriptional regulator YP_003191275.1 PFAM: protein of unknown function DUF421; KEGG: bha:BH1232 hypothetical protein; SNP YP_003191276.1 PFAM: polysaccharide deacetylase; copper amine oxidase domain protein; KEGG: baa:BA_2464 polysaccharide deacetylase YP_003191278.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dat:HRM2_22030 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein YP_003191279.1 PFAM: Domain of unknown function DUF1791; KEGG: nis:NIS_1825 hypothetical protein YP_003191280.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bar:GBAA3546 acetyltransferase YP_003191281.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance YP_003191283.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acp:A2cp1_0670 ABC transporter related YP_003191284.1 KEGG: aba:Acid345_1572 hypothetical protein YP_003191285.1 TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein; KEGG: bha:BH0556 mercuric transport system (mercuric-binding protein) YP_003191286.1 KEGG: bha:BH3243 cell division protein YP_003191289.1 PFAM: metallophosphoesterase; KEGG: bha:BH2382 hypothetical protein YP_003191290.1 KEGG: net:Neut_0396 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003191291.1 PFAM: major facilitator superfamily MFS_1; KEGG: bar:GBAA4961 EmrB/QacA family drug resistance transporter YP_003191292.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_A3739 hypothetical protein YP_003191293.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: mgm:Mmc1_1986 RNA-directed DNA polymerase (reverse transcriptase) YP_003191294.1 KEGG: rsq:Rsph17025_3830 hypothetical protein YP_003191296.1 KEGG: hha:Hhal_0784 transposase, IS4 family protein YP_003191299.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; S-layer domain protein; KEGG: bha:BH1491 protease YP_003191300.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_1105 integrase catalytic subunit YP_003191301.1 SMART: AAA ATPase; KEGG: glo:Glov_2122 AAA ATPase YP_003191302.1 KEGG: bha:BH2521 transposase (21) YP_003191303.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; transposase IS200- family protein; KEGG: acr:Acry_3575 IS605 family transposase OrfB YP_003191304.1 KEGG: bha:BH2521 transposase (21) YP_003191305.1 KEGG: glo:Glov_1408 hypothetical protein YP_003191306.1 KEGG: glo:Glov_1407 domain of unknown function DUF1814 YP_003191307.1 KEGG: dal:Dalk_3879 transposase-like protein YP_003191310.1 KEGG: hypothetical protein YP_003191312.1 KEGG: shn:Shewana3_3655 IS4 family transposase YP_003191317.1 PFAM: integrase family protein; KEGG: gsu:GSU0492 phage integrase family site specific recombinase YP_003191318.1 KEGG: ecg:E2348C_2658 hypothetical protein YP_003191319.1 TIGRFAM: phage minor structural protein; KEGG: bha:BH0962 hypothetical protein YP_003191320.1 KEGG: bba:Bd2872 hypothetical protein YP_003191321.1 KEGG: mno:Mnod_5047 fibronectin type III domain protein YP_003191322.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003191325.1 KEGG: bsu:BSU12810 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding LysM; SMART: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding LysM YP_003191327.1 PFAM: SCP-like extracellular; KEGG: bha:BH2878 hypothetical protein YP_003191328.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003191329.1 KEGG: dal:Dalk_4689 hypothetical protein YP_003191331.1 KEGG: dat:HRM2_21770 transposase (IS4 family protein) YP_003191334.1 KEGG: plu:plu3472 hypothetical protein YP_003191335.1 KEGG: sfu:Sfum_3184 replicative DNA helicase YP_003191336.1 PFAM: BRO domain protein; KEGG: abm:ABSDF1019 putative prophage antirepressor YP_003191337.1 PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: hypothetical protein YP_003191338.1 PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: sde:Sde_3900 response regulator receiver domain-containing protein YP_003191339.1 KEGG: bsu:BSU04450 two-component sensor histidine kinase YP_003191342.1 KEGG: lpc:LPC_0118 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 3'-5' exonuclease; SMART: DNA-directed DNA polymerase; 3'-5' exonuclease YP_003191343.1 PFAM: BRO domain protein; phage antirepressor protein; KEGG: bpm:BURPS1710b_1644 BRO domain-containing protein YP_003191345.1 PFAM: Resolvase, Holliday junction-type YP_003191346.1 KEGG: cla:Cla_0049 anaerobic ribonucleoside triphosphate reductase activating protein YP_003191347.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_003191348.1 KEGG: gme:Gmet_1593 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_003191350.1 PFAM: cell wall hydrolase SleB; Peptidoglycan- binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bar:GBAA2748 spore cortex-lytic enzyme prepeptide YP_003191351.1 TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX; KEGG: dvl:Dvul_0990 FAD-dependent thymidylate synthase YP_003191354.1 KEGG: smt:Smal_0900 hypothetical protein YP_003191355.1 KEGG: bha:BH0955 hypothetical protein YP_003191356.1 KEGG: bha:BH0956 hypothetical protein YP_003191358.1 KEGG: conserved hypothetical protein YP_003191361.1 KEGG: bha:BH2521 transposase (21) YP_003191362.1 TIGRFAM: transposase, IS605 OrfB family; KEGG: bar:GBAA1783 IS605 family transposase OrfB YP_003191363.1 KEGG: scl:sce2707 hypothetical protein YP_003191364.1 KEGG: mes:Meso_1793 hypothetical protein YP_003191366.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003191367.1 KEGG: gbm:Gbem_2476 NADPH-dependent FMN reductase YP_003191369.1 PFAM: peptidase M24; creatinase; KEGG: gsu:GSU1105 xaa-pro dipeptidase YP_003191370.1 PFAM: coenzyme A transferase; KEGG: sfu:Sfum_0810 glutaconate CoA-transferase YP_003191371.1 PFAM: coenzyme A transferase; KEGG: gur:Gura_3034 glutaconate CoA-transferase YP_003191372.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: gur:Gura_2025 cob(I)alamin adenosyltransferase YP_003191373.1 KEGG: sus:Acid_6472 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_003191374.1 PFAM: cobalamin B12-binding domain protein; KEGG: scl:sce1655 putative isobutyryl-CoA mutase, chain B YP_003191375.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: gur:Gura_2027 LAO/AO transport system ATPase YP_003191377.1 KEGG: dal:Dalk_1286 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; CBS domain-containing protein; PAS fold-4 domain protein; PAS fold domain protein; ATPase associated with various cellular activities AAA_5; SMART: CBS domain-containing protein; AAA ATPase; PAS domain-containing protein YP_003191378.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: aca:ACP_3094 oxidoreductase, GMC family YP_003191379.1 KEGG: aca:ACP_3093 hypothetical protein YP_003191380.1 KEGG: bpy:Bphyt_6387 hypothetical protein YP_003191381.1 KEGG: bsu:BSU13530 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein YP_003191382.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pca:Pcar_2193 NADH oxidase YP_003191383.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dvm:DvMF_2265 transcriptional regulator, MarR family YP_003191385.1 PFAM: transcription activator effector binding; helix-turn-helix- domain-containing protein AraC type; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: bsu:BSU05170 hypothetical protein YP_003191386.1 PFAM: transcriptional regulator PadR family protein; KEGG: bha:BH3951 hypothetical protein YP_003191387.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4241 multidrug RND transporter, membrane fusion protein YP_003191388.1 PFAM: acriflavin resistance protein; KEGG: rce:RC1_0273 AcrB YP_003191389.1 PFAM: beta-lactamase; KEGG: bar:GBAA3056 hypothetical protein YP_003191390.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: atc:AGR_pAT_516 hypothetical protein YP_003191391.1 PFAM: transposase IS200-family protein; KEGG: noc:Noc_0387 transposase IS200 YP_003191393.1 PFAM: TfoX domain protein; KEGG: eta:ETA_21010 regulator of competence- specific genes YP_003191394.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: dal:Dalk_4705 NADH:flavin oxidoreductase/NADH oxidase YP_003191395.1 KEGG: bsu:BSU18730 hypothetical protein YP_003191396.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: pna:Pnap_2313 electron transfer flavoprotein beta-subunit YP_003191397.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit ; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Electron transfer flavoprotein alpha subunit; KEGG: gur:Gura_1212 electron transfer flavoprotein, alpha subunit YP_003191398.1 PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; HI0933 family protein; KEGG: lch:Lcho_1370 electron-transferring- flavoprotein dehydrogenase YP_003191399.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cti:pRALTA_CDS323616R ferredoxin-like protein YP_003191400.1 PFAM: acriflavin resistance protein; KEGG: aeh:Mlg_0652 acriflavin resistance protein YP_003191401.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tmz:Tmz1t_2074 efflux transporter, RND family, MFP subunit YP_003191402.1 PFAM: regulatory protein TetR; KEGG: baa:BA_0964 bacterial regulatory proteins, TetR family YP_003191403.1 PFAM: Hypothetical protein MTH865; KEGG: glo:Glov_3706 hypothetical protein MTH865 YP_003191404.1 PFAM: Protein of unknown function DUF1638; KEGG: dat:HRM2_24360 hypothetical protein YP_003191405.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dat:HRM2_24100 Crp YP_003191407.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bsu:BSU14490 two-component sensor histidine kinase YP_003191408.1 KEGG: dal:Dalk_1996 transcriptional regulator, ArsR family YP_003191409.1 PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: hypothetical protein LOC100021983 YP_003191410.1 PFAM: EAL domain protein; GGDEF domain-containing protein; CBS domain-containing protein; SMART: EAL domain protein; GGDEF domain-containing protein; KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase YP_003191411.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: geo:Geob_0456 PHP domain protein YP_003191412.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bsu:BSU24990 phosphate ABC transporter (binding protein) YP_003191413.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: baa:BA_1304 binding-protein-dependent transport systems inner membrane component YP_003191414.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU24970 phosphate ABC transporter (permease) YP_003191415.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: swd:Swoo_4795 methyl-accepting chemotaxis sensory transducer YP_003191416.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bar:GBAA4833 DNA-binding response regulator PhoP YP_003191417.1 PFAM: protein of unknown function DUF105; KEGG: bha:BH1587 iron(III) dicitrate transport system (permease) YP_003191418.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: gur:Gura_2025 cob(I)alamin adenosyltransferase YP_003191419.1 PFAM: Pyrrolo-quinoline quinone; KEGG: bsu:BSU39940 hypothetical protein YP_003191420.1 PFAM: Ig domain protein group 2 domain protein; S- layer domain protein; cellulosome anchoring protein cohesin region; Fibronectin type III domain protein; Immunoglobulin domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: hypothetical protein LOC753956 YP_003191421.1 PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; Pyrrolo-quinoline quinone; KEGG: aba:Acid345_4167 pyrrolo-quinoline quinone YP_003191422.1 PFAM: S-layer domain protein; Ig domain protein group 2 domain protein; Pyrrolo-quinoline quinone; SMART: Ig domain protein group 2 domain protein; Pyrrolo-quinoline quinone; KEGG: sty:HCM2.0066c hypothetical protein YP_003191423.1 PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: sus:Acid_4533 pyrrolo-quinoline quinone YP_003191424.1 KEGG: GJ14166 gene product from transcript GJ14166- RA YP_003191425.1 PFAM: cobalt transport protein; KEGG: bar:GBAA3365 ABC transporter permease YP_003191426.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bar:GBAA3364 ABC transporter ATP-binding protein YP_003191427.1 KEGG: bar:GBAA3363 hypothetical protein YP_003191428.1 PFAM: GLUG domain protein; KEGG: azc:AZC_1396 hypothetical protein YP_003191429.1 PFAM: LytTr DNA-binding region; KEGG: sus:Acid_7003 response regulator receiver protein YP_003191431.1 KEGG: geo:Geob_3347 cytochrome c family protein YP_003191432.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bsu:BSU37130 two-component response regulator YP_003191433.1 KEGG: pin:Ping_2394 filamentous haemagglutinin outer membrane protein YP_003191434.1 KEGG: cps:CPS_2383 putative surface protein YP_003191437.1 KEGG: surface antigen BspA-like YP_003191439.1 PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: surface antigen BspA-like YP_003191440.1 PFAM: S-layer domain protein; cellulosome anchoring protein cohesin region; KEGG: bar:GBAA2803 S-layer protein, putative YP_003191441.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bra:BRADO4852 putative nitrilase/cyanide hydratase family protein (carbon-nitrogen hydrolase) YP_003191442.1 KEGG: aha:AHA_1159 Zn-ribbon-containing protein YP_003191445.1 KEGG: glycoprotein (predicted) YP_003191446.1 PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: surface antigen BspA-like YP_003191447.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_003191448.1 PFAM: protein of unknown function DUF763; KEGG: bpt:Bpet1643 hypothetical protein YP_003191449.1 SMART: helicase c2; KEGG: baa:BA_2103 HELICc2, helicase superfamily C- terminal domain YP_003191451.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: hch:HCH_04023 Co/Zn/Cd cation transporter YP_003191452.1 KEGG: dat:HRM2_41960 hypothetical protein YP_003191453.1 PFAM: protein of unknown function DUF1694; KEGG: bha:BH3352 hypothetical protein YP_003191454.1 PFAM: protein of unknown function DUF541; KEGG: pla:Plav_0525 hypothetical protein YP_003191455.1 PFAM: protein of unknown function DUF445; KEGG: baa:BA_2291 hypothetical protein YP_003191456.1 PFAM: protein of unknown function DUF445; KEGG: nmu:Nmul_A0030 hypothetical protein YP_003191457.1 TIGRFAM: 2-heptaprenyl-1,4-naphthoquinone methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: baa:BA_2054 ubiE/COQ5 methyltransferase family YP_003191458.1 KEGG: xfm:Xfasm12_1564 hypothetical protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Resolvase domain; regulatory protein MerR; SMART: regulatory protein MerR YP_003191459.1 KEGG: bar:GBAA0375 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003191460.1 TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: baa:BA_1742 peptidase family M3 YP_003191461.1 TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: sfu:Sfum_0260 chaperone protein DnaK YP_003191462.1 PFAM: GrpE protein; KEGG: mxa:MXAN_6672 co-chaperone GrpE YP_003191463.1 PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: sfu:Sfum_0261 chaperone DnaJ domain protein YP_003191464.1 KEGG: nam:NAMH_1237 transcriptional regulator, MerR family YP_003191465.1 KEGG: sus:Acid_0505 ATPase; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase YP_003191466.1 PFAM: YdjC family protein; KEGG: vsa:VSAL_I1501 hypothetical protein YP_003191467.1 Contains selenocysteine; PFAM: arsenate reductase and related; KEGG: bha:BH3485 arsenate reductase YP_003191468.1 PFAM: NADPH-dependent FMN reductase; KEGG: dvl:Dvul_2158 NADPH-dependent FMN reductase YP_003191469.1 PFAM: pyruvate carboxyltransferase; KEGG: dvm:DvMF_1791 2-isopropylmalate synthase YP_003191470.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mca:MCA0998 methyltransferase, putative YP_003191471.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_003191472.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003191473.1 PFAM: S-layer domain protein; KEGG: S-layer homology domain-containing protein YP_003191474.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: bsu:BSU03440 methyl-accepting chemotaxis protein YP_003191475.1 PFAM: transposase IS4 family protein; KEGG: scl:sce1510 putative transposase YP_003191477.1 PFAM: transcriptional regulator PadR family protein; KEGG: dal:Dalk_1122 transcriptional regulator, PadR- like family YP_003191478.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: scl:sce2804 RND family efflux transporter MFP subunit YP_003191479.1 PFAM: acriflavin resistance protein; KEGG: pla:Plav_1535 acriflavin resistance protein YP_003191480.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: baa:BA_0573 REC, CheY-homologous receiver domain YP_003191481.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: glo:Glov_1806 heavy metal sensor signal transduction histidine kinase YP_003191482.1 PFAM: acriflavin resistance protein; KEGG: lhk:LHK_02819 NolG YP_003191483.1 PFAM: transposase IS3/IS911 family protein; KEGG: hha:Hhal_1144 transposase IS3/IS911 family protein YP_003191484.1 SNP YP_003191485.1 PFAM: Penicillinase repressor; KEGG: saz:Sama_3341 CopY family transcriptional regulator YP_003191486.1 KEGG: hypothetical protein YP_003191487.1 KEGG: bha:BH2521 transposase (21) YP_003191489.1 PFAM: Penicillinase repressor; KEGG: saz:Sama_3341 CopY family transcriptional regulator YP_003191491.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_3728 glyoxalase family protein YP_003191492.1 PFAM: Recombinase; KEGG: gdj:Gdia_1074 resolvase domain YP_003191493.1 KEGG: bha:BH2773 two-component response regulator central for the initiation of sporulation; TIGRFAM: sporulation transcription factor Spo0A; PFAM: Sporulation initiation factor Spo0A ; response regulator receiver; SMART: response regulator receiver YP_003191494.1 PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: bha:BH2771 hypothetical protein YP_003191496.1 PFAM: glycosyl transferase family 2; KEGG: bha:BH2769 dolichyl-phosphate mannose synthase YP_003191497.1 KEGG: bha:BH2768 hypothetical protein YP_003191498.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; peptidase M42 family protein; KEGG: dat:HRM2_27370 PepT YP_003191499.1 KEGG: bha:BH1523 hypothetical protein YP_003191502.1 TIGRFAM: stage II sporulation protein M; PFAM: protein of unknown function DUF95 transmembrane; KEGG: bha:BH1526 stage II sporulation protein M YP_003191503.1 KEGG: dal:Dalk_3511 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003191504.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bar:GBAA4311 site-specific tyrosine recombinase XerD YP_003191505.1 KEGG: sus:Acid_6503 phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: Phosphopentomutase domain protein; metalloenzyme domain protein YP_003191506.1 KEGG: bar:GBAA4307 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like YP_003191507.1 PFAM: sulfatase; KEGG: noc:Noc_0194 arylsulfatase A and related enzyme YP_003191509.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_2887 ABC transporter related YP_003191510.1 KEGG: dal:Dalk_2888 hypothetical protein YP_003191513.1 PFAM: dehydrogenase E1 component; KEGG: sfu:Sfum_0448 pyruvate dehydrogenase (acetyl- transferring) YP_003191514.1 PFAM: Transketolase domain protein; Transketolase central region; KEGG: sfu:Sfum_0449 transketolase domain protein YP_003191515.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: bar:GBAA4297 D-alanyl-D-alanine carboxypeptidase YP_003191516.1 TIGRFAM: anti-sigma F factor antagonist; anti-anti- sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bsu:BSU23470 anti-anti-sigma factor (antagonist of SpoIIAB) YP_003191517.1 KEGG: bha:BH1537 anti-sigma F factor; TIGRFAM: anti-sigma F factor; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003191518.1 TIGRFAM: RNA polymerase sigma-F factor; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 3 domain protein; sigma- 70 region 4 domain protein; KEGG: bha:BH2554 sporulation sigma factor SigG YP_003191519.1 PFAM: protein of unknown function DUF1458; KEGG: afw:Anae109_0307 hypothetical protein YP_003191520.1 KEGG: bsu:BSU23400 sporulation protein VAE YP_003191521.1 PFAM: GerA spore germination protein; KEGG: bha:BH1423 stage V sporulation protein AF YP_003191522.1 PFAM: protein of unknown function DUF1624; KEGG: mlo:mlr1315 hypothetical protein YP_003191523.1 KEGG: bar:GBAA2804 hypothetical protein YP_003191524.1 PFAM: beta-lactamase domain protein; KEGG: bar:GBAA2803 S-layer protein, putative YP_003191526.1 KEGG: gur:Gura_1539 putative CoA-substrate-specific enzyme activase YP_003191527.1 KEGG: sfu:Sfum_1830 CoA enzyme activase YP_003191528.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gur:Gura_1539 putative CoA-substrate-specific enzyme activase YP_003191529.1 PFAM: protein of unknown function DUF156; KEGG: bha:BH0558 hypothetical protein YP_003191530.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bar:GBAA3859 heavy metal-transporting ATPase YP_003191534.1 PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase ; AAA ATPase; KEGG: EMB25; EMB25 (EMBRYO DEFECTIVE 25); ATP- dependent helicase/ RNA helicase YP_003191535.1 PFAM: DSH domain protein; helicase domain protein; SMART: helicase domain protein; KEGG: translation repressor YP_003191536.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: afw:Anae109_2891 excinuclease ABC subunit C YP_003191537.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_003191538.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bar:GBAA1438 diaminopimelate decarboxylase YP_003191539.1 PFAM: Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; CBS domain-containing protein; phosphoesterase RecJ domain protein; SMART: CBS domain-containing protein; KEGG: gur:Gura_2246 CBS domain-containing protein YP_003191540.1 PFAM: peptidase M50; KEGG: ppd:Ppro_1686 peptidase M50 YP_003191541.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003191543.1 KEGG: bsu:BSU29510 hypothetical protein YP_003191544.1 TIGRFAM: sporulation protein YtfJ; KEGG: bha:BH3195 hypothetical protein YP_003191545.1 PFAM: nucleoside recognition domain protein; KEGG: bha:BH1574 spore maturation protein YP_003191546.1 PFAM: nucleoside recognition domain protein; KEGG: afw:Anae109_0346 nucleoside recognition domain-containing protein YP_003191547.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: geo:Geob_3289 pseudouridine synthase YP_003191550.1 PFAM: HutP family protein YP_003191551.1 KEGG: afw:Anae109_0368 phospho-2-dehydro-3- deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003191552.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: bsu:BSU22890 cytidylate kinase YP_003191553.1 KEGG: bha:BH1635 hypothetical protein; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003191554.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_003191555.1 PFAM: protein of unknown function DUF1614; KEGG: bra:BRADO6889 hypothetical protein YP_003191556.1 TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation P family protein; KEGG: bar:GBAA2068 stage II sporulation protein P YP_003191557.1 KEGG: bar:GBAA2652 hypothetical protein YP_003191559.1 PFAM: protein of unknown function DUF512; KEGG: ppd:Ppro_2966 hypothetical protein YP_003191560.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_003191561.1 PFAM: protein of unknown function DUF205; KEGG: gur:Gura_3922 hypothetical protein YP_003191562.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_003191563.1 TIGRFAM: stage IV sporulation protein A; KEGG: bha:BH1645 stage IV sporulation protein A (spore cortex formation and coat assembly) YP_003191565.1 PFAM: amino acid-binding ACT domain protein; KEGG: bha:BH1214 hypothetical protein YP_003191566.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_003191567.1 TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sus:Acid_0902 homoserine kinase YP_003191569.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_003191570.1 PFAM: ExsB family protein; KEGG: geo:Geob_1404 PP-loop domain-containing protein YP_003191571.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: sat:SYN_00474 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit YP_003191572.1 PFAM: NADPH-dependent FMN reductase; KEGG: sfu:Sfum_1392 NADPH-dependent FMN reductase YP_003191573.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: acr:Acry_3575 IS605 family transposase OrfB YP_003191574.1 KEGG: bar:GBAA3908 hypothetical protein; TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB YP_003191575.1 KEGG: bha:BH1149 hypothetical protein YP_003191576.1 This protein performs the mismatch recognition step during the DNA repair process YP_003191577.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: sat:SYN_02869 hydantoinase/oxoprolinase family protein YP_003191578.1 PFAM: histone deacetylase superfamily; KEGG: sat:SYN_02870 histone deacetylase domain- containing protein YP_003191579.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_003191580.1 PFAM: protein of unknown function DUF548; KEGG: bha:BH2367 hypothetical protein YP_003191581.1 KEGG: bar:GBAA3843 tRNA delta(2)- isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_003191582.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: bha:BH2365 RNA-binding protein Hfq YP_003191583.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bsu:BSU17420 sporulation protein VK YP_003191584.1 PFAM: Aluminium resistance family protein; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bsu:BSU17440 hypothetical protein YP_003191585.1 KEGG: bha:BH2356 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein YP_003191586.1 KEGG: cha:CHAB381_0023 fumarate hydratase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region YP_003191587.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: nis:NIS_0837 fumarate/tartrate hydratase, beta subunit YP_003191588.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: dat:HRM2_16060 Cat1 YP_003191590.1 PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: afw:Anae109_3259 methyltransferase type 11 YP_003191591.1 PFAM: Rubrerythrin; KEGG: ppd:Ppro_2151 rubrerythrin YP_003191592.1 PFAM: glycosyl transferase group 1; KEGG: hch:HCH_03962 glycosyltransferase YP_003191593.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sat:SYN_02788 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase YP_003191594.1 KEGG: gsu:GSU1703 6-phosphofructokinase; TIGRFAM: phosphofructokinase; PFAM: phosphofructokinase YP_003191596.1 PFAM: protein of unknown function UPF0182; KEGG: bja:bll7333 hypothetical protein YP_003191598.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_003191599.1 KEGG: mgm:Mmc1_2882 phage tail tape measure protein, TP901 family YP_003191601.1 PFAM: GCN5-related N-acetyltransferase; KEGG: swp:swp_2337 histone acetyltransferase HPA2- like acetyltransferase YP_003191603.1 KEGG: hypothetical protein YP_003191604.1 KEGG: plu:plu4158 IS200 family transposase YP_003191605.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sfu:Sfum_2004 GCN5-related N- acetyltransferase YP_003191606.1 PFAM: Methyltransferase type 12; Methyltransferase type 11; Tellurite resistance methyltransferase, TehB, core; thiopurine S-methyltransferase; KEGG: acp:A2cp1_0197 methyltransferase type 11 YP_003191607.1 PFAM: protein of unknown function UPF0061; KEGG: bha:BH3939 hypothetical protein YP_003191609.1 PFAM: peptidase M24; creatinase; KEGG: pca:Pcar_2614 Xaa-Pro aminopeptidase YP_003191610.1 KEGG: aba:Acid345_1145 hypothetical protein YP_003191612.1 PFAM: beta-lactamase domain protein; KEGG: bar:GBAA2405 hydrolase, putative YP_003191615.1 KEGG: GA23369 gene product from transcript GA23369- RA YP_003191616.1 KEGG: mgm:Mmc1_3239 hypothetical protein YP_003191617.1 KEGG: zmo:ZMO1932 hypothetical protein YP_003191618.1 KEGG: wsu:WS1649 DNA methylase-type I restriction- modification system YP_003191619.1 KEGG: baa:BA_1592 FTSW_RODA_SPOVE, cell cycle protein YP_003191620.1 PFAM: transcriptional regulator PadR family protein; KEGG: aba:Acid345_1284 transcriptional regulator, PadR family YP_003191621.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: tgr:Tgr7_1963 putative methyl-accepting chemotaxis sensory transducer YP_003191624.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; KEGG: scl:sce7807 hypothetical protein YP_003191627.1 KEGG: bac:BamMC406_1290 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; GAF domain protein; SMART: GGDEF domain-containing protein; GAF domain protein YP_003191630.1 KEGG: bar:GBAA2972 hypothetical protein YP_003191633.1 KEGG: sfu:Sfum_2659 domain of unknown function DUF1745; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; domain of unknown function DUF1745; SMART: GGDEF domain-containing protein YP_003191634.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: eca:ECA3883 hypothetical protein YP_003191635.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: hypothetical protein YP_003191636.1 KEGG: gbm:Gbem_3382 major facilitator superfamily MFS_1 YP_003191637.1 KEGG: dat:HRM2_26850 Eno; TIGRFAM: enolase; PFAM: enolase YP_003191638.1 KEGG: sfu:Sfum_3036 dynamin family protein YP_003191640.1 KEGG: lpn:lpg2069 transposase Tn5 YP_003191644.1 KEGG: cti:pRALTA_0143 hypothetical protein YP_003191646.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ccv:CCV52592_0926 prophage LambdaSa04, RelE/ParE family protein YP_003191647.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: ccv:CCV52592_2220 prevent-host-death family protein YP_003191648.1 KEGG: rpd:RPD_3434 hypothetical protein YP_003191649.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: mch:Mchl_3467 plasmid stabilization system YP_003191650.1 TIGRFAM: prevent-host-death family protein; KEGG: ccv:CCV52592_2220 prevent-host-death family protein YP_003191651.1 KEGG: ppd:Ppro_1908 hypothetical protein YP_003191652.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003191653.1 PFAM: Rubrerythrin; KEGG: bar:GBAA3113 hypothetical protein YP_003191654.1 KEGG: vha:VIBHAR_06964 hypothetical protein YP_003191655.1 PFAM: integrase domain protein SAM domain protein; integrase family protein; KEGG: dat:HRM2_26340 XerC YP_003191656.1 KEGG: bpt:Bpet1451 integrase/recombinase YP_003191657.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dat:HRM2_26360 phage-specific recombinase/integrase XerD YP_003191658.1 KEGG: shw:Sputw3181_1114 integrase catalytic subunit YP_003191659.1 PFAM: IstB domain protein ATP-binding protein; KEGG: maq:Maqu_3709 IstB ATP binding domain- containing protein YP_003191660.1 PFAM: IstB domain protein ATP-binding protein; KEGG: asa:ASA_P5G149 transposase subunit 2 YP_003191662.1 KEGG: nmu:Nmul_A1697 hypothetical protein YP_003191663.1 KEGG: shn:Shewana3_3655 IS4 family transposase YP_003191664.1 PFAM: protein of unknown function DUF955; helix- turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ppr:PBPRA1323 hypothetical protein YP_003191669.1 KEGG: dat:HRM2_33940 transposase family protein YP_003191670.1 KEGG: nam:NAMH_0969 hypothetical protein YP_003191671.1 KEGG: vfi:VF_A0651 hypothetical protein YP_003191672.1 KEGG: cco:CCC13826_0952 hypothetical protein YP_003191673.1 PFAM: ATPase associated with various cellular activities AAA_5; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cco:CCC13826_0951 thiamine-phosphate pyrophosphorylase YP_003191674.1 PFAM: Recombinase; Resolvase domain; KEGG: dsh:Dshi_0396 recombinase YP_003191675.1 KEGG: shn:Shewana3_3655 IS4 family transposase YP_003191676.1 KEGG: bha:BH2521 transposase (21) YP_003191677.1 KEGG: dat:HRM2_05840 hypothetical protein YP_003191678.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dat:HRM2_26360 phage-specific recombinase/integrase XerD YP_003191679.1 PFAM: integrase family protein; KEGG: dat:HRM2_26350 predicted phage-specific integrase YP_003191680.1 PFAM: integrase family protein; KEGG: reh:PHG056 putative integrase/recombinase YP_003191681.1 PFAM: transposase IS66; KEGG: psa:PST_3228 ISPsy5, transposase YP_003191684.1 PFAM: protein of unknown function DUF955; KEGG: eba:ebA2392 putative transcriptional regulator YP_003191685.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bxe:Bxe_B1554 XRE family transcriptional regulator YP_003191686.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: bsu:BSU06730 hypothetical protein YP_003191687.1 PFAM: protein of unknown function DUF327; KEGG: bha:BH1478 hypothetical protein YP_003191688.1 KEGG: mxa:MXAN_4629 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; HI0933 family protein YP_003191689.1 KEGG: bpt:Bpet0626 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_003191690.1 TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: bsu:BSU27850 quinolinate synthetase YP_003191691.1 PFAM: Helix-turn-helix type 11 domain protein; 3H domain protein; KEGG: bsu:BSU27890 hypothetical protein YP_003191692.1 KEGG: bsu:BSU34970 pyrophosphatase PpaX; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003191693.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: apa:APP7_1136 thioredoxin YP_003191694.1 TIGRFAM: regulatory protein, FmdB family; KEGG: dal:Dalk_0219 regulatory protein, FmdB family YP_003191695.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: Dihydroorotate dehydrogenase family protein YP_003191696.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: wpi:WPa_0277 putative transcriptional regulator YP_003191697.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: gur:Gura_2858 peptidoglycan glycosyltransferase YP_003191698.1 PFAM: peptidase U32; KEGG: gbm:Gbem_2714 peptidase U32 YP_003191699.1 PFAM: aminodeoxychorismate lyase; KEGG: dat:HRM2_33010 putative aminodeoxychorismate lyase YP_003191700.1 PFAM: VanW family protein; G5 domain protein; KEGG: baa:BA_1185 hypothetical protein YP_003191701.1 PFAM: protein of unknown function DUF1292; KEGG: bar:GBAA4613 hypothetical protein YP_003191702.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: bar:GBAA4614 Holliday junction resolvase-like protein YP_003191703.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron- sulfur binding domain protein; KEGG: gme:Gmet_1727 aldo/keto reductase family oxidoreductase YP_003191704.1 PFAM: protein of unknown function DUF965; KEGG: bar:GBAA4615 hypothetical protein YP_003191705.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003191707.1 KEGG: bar:GBAA4621 hypothetical protein YP_003191709.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; ExsB family protein; KEGG: gur:Gura_1492 tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase YP_003191710.1 TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein; KEGG: dol:Dole_0755 NifU domain-containing protein YP_003191711.1 KEGG: sat:SYN_01251 cysteine desulfurase / selenocysteine lyase; TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003191712.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bha:BH1259 hypothetical protein YP_003191714.1 PFAM: Thioredoxin domain; KEGG: PtrTrxm3; thioredoxin m YP_003191715.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: gur:Gura_4414 UBA/ThiF-type NAD/FAD binding protein YP_003191716.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_003191717.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_003191718.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_01020 ABC-type transporter, permease protein (nitrate/sulfonate/bicarbonate transporter) YP_003191719.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce4768 ABC-type transporter, ATP-binding protein YP_003191720.1 PFAM: NLPA lipoprotein; KEGG: dat:HRM2_01000 ABC-type transporter, periplamsic substrate binding protein YP_003191721.1 PFAM: protein of unknown function DUF896; KEGG: bar:GBAA3752 hypothetical protein YP_003191722.1 PFAM: beta-lactamase domain protein; KEGG: dol:Dole_2072 beta-lactamase domain- containing protein YP_003191723.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_003191724.1 KEGG: bha:BH1242 GTP pyrophosphokinase (stringent response); TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003191725.1 PFAM: phosphoribosyltransferase; KEGG: bsu:BSU27610 adenine phosphoribosyltransferase YP_003191726.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: geo:Geob_3446 single-stranded-DNA-specific exonuclease RecJ YP_003191727.1 PFAM: protein of unknown function DUF1540 YP_003191728.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron- sulfur binding domain protein; KEGG: dal:Dalk_0886 aldo/keto reductase YP_003191729.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU0729 iron-sulfur cluster-binding protein YP_003191730.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: gur:Gura_0371 beta-lactamase domain- containing protein YP_003191731.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_2935 rubredoxin-type Fe(Cys)4 protein YP_003191732.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_003191733.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_003191734.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: bha:BH1556 bifunctional 3,4-dihydroxy-2- butanone 4-phosphate synthase/GTP cyclohydrolase II protein YP_003191735.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_003191736.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; KEGG: gme:Gmet_1624 5-amino-6-(5- phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase YP_003191737.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: gur:Gura_0278 histidine kinase YP_003191738.1 KEGG: bar:GBAA3998 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'- phosphate decarboxylase YP_003191739.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: bha:BH2503 ribosome-associated GTPase YP_003191740.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain-containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain-containing protein; KEGG: bha:BH2504 serine/threonine protein kinase YP_003191741.1 PFAM: penicillin-binding protein transpeptidase; KEGG: eba:ebA3040 penicillin-binding protein 2 YP_003191742.1 PFAM: cell cycle protein; KEGG: sus:Acid_7521 penicillin-binding protein, transpeptidase YP_003191743.1 KEGG: mxa:MXAN_5349 serine/threonine protein phosphatase, 2C family; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein YP_003191744.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: mxa:MXAN_1525 FHA domain/GGDEF domain protein YP_003191745.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce2902 GGDEF domain-containing protein YP_003191746.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: bsu:BSU15750 hypothetical protein YP_003191747.1 TIGRFAM: sun protein; RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: gur:Gura_0193 sun protein YP_003191748.1 PFAM: protein of unknown function DUF116; KEGG: dds:Ddes_0013 protein of unknown function DUF116 YP_003191749.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: gme:Gmet_3339 methionyl-tRNA formyltransferase YP_003191750.1 KEGG: afw:Anae109_0768 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003191751.1 KEGG: bsu:BSU15710 primosome assembly protein PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein YP_003191752.1 KEGG: gur:Gura_2927 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein YP_003191753.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: bha:BH2511 DNA-directed RNA polymerase omega subunit YP_003191754.1 Essential for recycling GMP and indirectly, cGMP YP_003191755.1 PFAM: protein of unknown function DUF370; KEGG: bha:BH2513 hypothetical protein YP_003191756.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: ade:Adeh_2607 hypothetical protein YP_003191757.1 PFAM: aminotransferase class I and II; KEGG: gur:Gura_2501 aminotransferase, class I and II YP_003191758.1 KEGG: glo:Glov_3323 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_003191759.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bha:BH2515 cation-transporting ATPase YP_003191760.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis YP_003191761.1 PFAM: nitroreductase; KEGG: gme:Gmet_1074 nitroreductase YP_003191762.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BSU09010 hypothetical protein YP_003191763.1 KEGG: dat:HRM2_43440 Cdh2; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_003191764.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_43430 4Fe-4S iron-sulfur binding protein (ferredoxin) YP_003191765.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dat:HRM2_43420 Nox3 YP_003191766.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: sat:SYN_02131 iron-sulfur flavoprotein YP_003191767.1 PFAM: peptidase M48 Ste24p; KEGG: ppd:Ppro_3199 STE24 endopeptidase YP_003191768.1 PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: bsu:BSU15640 hypothetical protein YP_003191770.1 KEGG: gur:Gura_2702 hypothetical protein YP_003191771.1 KEGG: gur:Gura_1356 hypothetical protein YP_003191772.1 KEGG: ppd:Ppro_0048 hypothetical protein YP_003191773.1 KEGG: ppd:Ppro_0056 HPr kinase YP_003191774.1 PFAM: asparagine synthase; KEGG: gur:Gura_1351 asparagine synthase YP_003191775.1 PFAM: cell surface receptor IPT/TIG domain protein; SMART: cell surface receptor IPT/TIG domain protein; KEGG: gur:Gura_0756 polymorphic outer membrane protein YP_003191776.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: gur:Gura_0755 coagulation factor 5/8 type domain-containing protein YP_003191777.1 PFAM: Tail Collar domain protein; KEGG: gur:Gura_0754 phage tail collar domain- containing protein YP_003191778.1 PFAM: Tail Collar domain protein; KEGG: gur:Gura_0753 phage tail collar domain- containing protein YP_003191779.1 PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: hypothetical protein YP_003191780.1 KEGG: spc:Sputcn32_0350 signal transduction histidine kinase regulating citrate/malate metabolism YP_003191782.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_003191783.1 KEGG: glo:Glov_1866 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003191784.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_003191785.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: gur:Gura_2151 oxidoreductase FAD/NAD(P)- binding subunit YP_003191786.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; protein of unknown function DUF201; RimK domain protein ATP-grasp; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: bsu:BSU15520 carbamoyl phosphate synthase large subunit YP_003191787.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: bsu:BSU15510 carbamoyl phosphate synthase small subunit YP_003191788.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: gur:Gura_1857 dihydroorotase, multifunctional complex type YP_003191789.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_003191790.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_003191791.1 KEGG: bsu:BSU24440 hypothetical protein YP_003191792.1 PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BSU10980 hypothetical protein YP_003191793.1 PFAM: (2R)-phospho-3-sulfolactate synthase ComA; KEGG: xau:Xaut_4872 phosphosulfolactate synthase YP_003191794.1 PFAM: protein of unknown function DUF441; KEGG: abn:AB57_2455 hypothetical protein YP_003191795.1 PFAM: CBS domain-containing protein; SMART: CBS domain-containing protein; KEGG: dal:Dalk_2240 response regulator receiver protein YP_003191796.1 KEGG: gbm:Gbem_3820 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003191797.1 KEGG: bsu:BSU15460 hypothetical protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003191798.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_003191800.1 KEGG: pca:Pcar_1105 hypothetical protein YP_003191801.1 PFAM: PP-loop domain protein; KEGG: ppd:Ppro_3499 PP-loop domain-containing protein YP_003191804.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate YP_003191805.1 TIGRFAM: phosphoribosylformylglycinamidine synthase I; KEGG: sfu:Sfum_0433 phosphoribosylformylglycinamidine synthase I YP_003191806.1 KEGG: gme:Gmet_1941 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003191808.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: bsu:BSU34990 prolipoprotein diacylglyceryl transferase YP_003191810.1 molecular chaperone YP_003191812.1 PFAM: HI0933 family protein; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sat:SYN_00731 NAD(FAD)-utilizing dehydrogenases YP_003191813.1 TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; KEGG: bha:BH1570 sporulation protein YP_003191814.1 TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: baa:BA_0234 hypothetical protein YP_003191815.1 TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: baa:BA_0233 hypothetical protein YP_003191816.1 PFAM: protein of unknown function DUF421; protein of unknown function DUF1657; KEGG: baa:BA_0237 hypothetical protein YP_003191817.1 PFAM: protein of unknown function DUF1657; KEGG: baa:BA_0236 hypothetical protein YP_003191818.1 PFAM: protein of unknown function DUF47; KEGG: baa:BA_1995 protein of unknown function DUF47 YP_003191819.1 PFAM: phosphate transporter; KEGG: baa:BA_1994 PHO4, Phosphate transporter family YP_003191820.1 KEGG: Sass6; spindle assembly 6 homolog (C. elegans) YP_003191821.1 TIGRFAM: sporulation protein YunB; KEGG: baa:BA_0080 hypothetical protein YP_003191822.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_003191823.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: sat:SYN_00304 multimodular transpeptidase- transglycosylase YP_003191824.1 KEGG: bsu:BSU28580 recombination and DNA strand exchange inhibitor protein; TIGRFAM: MutS2 family protein; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; MutS III domain protein YP_003191825.1 PFAM: peptidase U32; KEGG: scl:sce2217 proteinase YP_003191827.1 KEGG: sus:Acid_0316 DNA-3-methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG) YP_003191828.1 PFAM: protein of unknown function DUF710; KEGG: bar:GBAA4797 hypothetical protein YP_003191829.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_003191830.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_003191831.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bar:GBAA4805 RNA methyltransferase YP_003191832.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: bar:GBAA4817 50S ribosomal protein L20 YP_003191833.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pca:Pcar_1420 ribosomal protein L35 YP_003191834.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: rru:Rru_A3488 translation initiation factor 3 YP_003191835.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_003191837.1 TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC; KEGG: bsu:BSU28960 hypothetical protein YP_003191838.1 PFAM: polysaccharide deacetylase; KEGG: bar:GBAA3679 polysaccharide deacetylase, putative YP_003191839.1 PFAM: acyltransferase 3; KEGG: mlo:mll4680 glycosyltransferase, contains similarity to NolL YP_003191842.1 KEGG: dat:HRM2_20330 hypothetical protein YP_003191843.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: bha:BH1535 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) YP_003191844.1 TIGRFAM: sporulation lipoprotein, YhcN/YlaJ family; KEGG: bar:GBAA2746 putative lipoprotein YP_003191845.1 PFAM: UspA domain protein; KEGG: rpt:Rpal_3922 UspA domain protein YP_003191846.1 PFAM: SNARE associated Golgi protein; KEGG: mfa:Mfla_1749 hypothetical protein YP_003191847.1 KEGG: bsu:BSU02720 hypothetical protein YP_003191848.1 KEGG: mno:Mnod_4733 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; copper amine oxidase domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003191849.1 KEGG: bha:BH3153 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; Helix-hairpin-helix domain protein class 2 YP_003191850.1 KEGG: bar:GBAA4830 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; zinc finger Fpg domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding YP_003191851.1 TIGRFAM: sporulation protein YtaF; PFAM: protein of unknown function DUF204; KEGG: bar:GBAA4829 hypothetical protein YP_003191852.1 KEGG: gsu:GSU0513 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_003191853.1 PFAM: Lytic transglycosylase catalytic; KEGG: tcx:Tcr_0924 lytic transglycosylase, catalytic YP_003191854.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mxa:MXAN_3010 site-specific recombinase, phage integrase family YP_003191855.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: abc:ACICU_02872 site-specific recombinase XerC YP_003191856.1 KEGG: baa:BA_0588 ParB-like nuclease domain; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003191857.1 KEGG: hypothetical protein YP_003191858.1 KEGG: bha:BH2521 transposase (21) YP_003191860.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003191861.1 SMART: helix-turn-helix domain protein YP_003191862.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bar:GBAA4126 prophage LambdaBa02, repressor protein YP_003191863.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003191864.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bha:BH1288 transcriptional repressor of PBSX genes YP_003191865.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: hsm:HSM_1876 helix-turn-helix domain- containing protein YP_003191866.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bha:BH1443 transcriptional regulator YP_003191867.1 KEGG: cko:CKO_03472 hypothetical protein YP_003191868.1 KEGG: bar:GBAA3830 prophage LambdaBa01, repressor protein, putative YP_003191870.1 PFAM: Resolvase domain; KEGG: ypg:YpAngola_B0090 resolvase TnpR YP_003191873.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: ank:AnaeK_3949 histidine kinase YP_003191874.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: aha:AHA_1077 modification methylase DdeI YP_003191875.1 KEGG: tcx:Tcr_0833 hypothetical protein YP_003191876.1 KEGG: pin:Ping_3728 hypothetical protein YP_003191877.1 KEGG: mno:Mnod_6265 hypothetical protein YP_003191879.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lpp:plpp0124 hypothetical protein YP_003191881.1 KEGG: mxa:MXAN_7292 hypothetical protein YP_003191882.1 KEGG: glo:Glov_0525 hypothetical protein YP_003191884.1 KEGG: bpt:Bpet0947 DNA (cytosine-5-)- methyltransferase, putative YP_003191887.1 PFAM: domain of unknown function DUF1738; KEGG: aca:ACP_0650 putative antirestriction protein ArdC YP_003191889.1 PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: bar:GBAA_pXO1_0099 hypothetical protein YP_003191890.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: tgr:Tgr7_3300 addiction module antitoxin YP_003191893.1 KEGG: ecq:ECED1_3590 hypothetical protein YP_003191896.1 KEGG: gur:Gura_1360 hypothetical protein YP_003191898.1 SMART: RNA binding S1 domain protein; KEGG: bsu:BSU22880 30S ribosomal protein S1 YP_003191899.1 PFAM: TRAG family protein; KEGG: xcb:XC_2413 putative NTPase VagA YP_003191901.1 KEGG: baa:BA_0374 hypothetical protein YP_003191902.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_2835 putative PAS/PAC sensor protein YP_003191903.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003191906.1 PFAM: Appr-1-p processing domain protein; KEGG: tbd:Tbd_1489 Appr-1-p processing protein YP_003191907.1 KEGG: bmn:BMA10247_1151 hypothetical protein YP_003191909.1 PFAM: TadE family protein; KEGG: sfu:Sfum_1495 TadE family protein YP_003191910.1 PFAM: peptidase A24A prepilin type IV; KEGG: dps:DP1537 hypothetical protein YP_003191916.1 PFAM: type II secretion system protein; KEGG: bba:Bd0470 Flp pilus assembly protein TadC YP_003191917.1 PFAM: type II secretion system protein; KEGG: bpy:Bphyt_6877 type II secretion system protein YP_003191918.1 PFAM: type II secretion system protein E; KEGG: mxa:MXAN_3107 type II/IV secretion system protein YP_003191919.1 KEGG: ppd:Ppro_2701 response regulator receiver protein YP_003191920.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: vvu:VV1_1748 Flp pilus assembly protein CpaB YP_003191923.1 PFAM: Abortive infection protein YP_003191924.1 KEGG: FLO1; Floculation protein FLO1 YP_003191925.1 PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein YP_003191926.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: hypothetical protein YP_003191927.1 PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; KEGG: dol:Dole_2343 PilT domain-containing protein YP_003191928.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein YP_003191929.1 KEGG: hha:Hhal_0784 transposase, IS4 family protein YP_003191931.1 KEGG: afw:Anae109_1251 non-specific protein- tyrosine kinase YP_003191932.1 PFAM: Peptidase M23; Lytic transglycosylase catalytic; KEGG: cju:C8J_1158 peptidase, M23/M37 family YP_003191933.1 KEGG: bha:BH2521 transposase (21) YP_003191934.1 KEGG: hypothetical protein YP_003191936.1 KEGG: bsu:BSU04940 hypothetical protein YP_003191940.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003191942.1 PFAM: transposase IS4 family protein; KEGG: lpn:lpg2069 transposase Tn5 YP_003191943.1 KEGG: shn:Shewana3_3655 IS4 family transposase YP_003191944.1 PFAM: membrane protein of unknown function; KEGG: gbm:Gbem_2195 membrane protein of unknown function YP_003191947.1 KEGG: scl:sce1452 hypothetical protein YP_003191948.1 KEGG: hypothetical protein YP_003191949.1 PFAM: Recombinase; KEGG: bsu:BSU06740 hypothetical protein YP_003191950.1 PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: dds:Ddes_1159 HhH-GPD family protein YP_003191951.1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated YP_003191952.1 KEGG: nis:NIS_0636 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; SMART: GGDEF domain-containing protein YP_003191953.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bar:GBAA3546 acetyltransferase YP_003191956.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003191958.1 PFAM: protein of unknown function UPF0060; KEGG: bsu:BSU08120 hypothetical protein YP_003191959.1 PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: vvy:VVA1425 transcriptional regulator YP_003191961.1 KEGG: bar:GBAA3129 hypothetical protein YP_003191962.1 KEGG: bar:GBAA3129 hypothetical protein YP_003191964.1 KEGG: dal:Dalk_3879 transposase-like protein YP_003191965.1 KEGG: sfu:Sfum_2761 cobyrinic acid a,c-diamide synthase YP_003191966.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: gsu:GSU2147 cadmium-translocating P-type ATPase YP_003191967.1 PFAM: regulatory protein TetR; KEGG: bar:GBAA3115 TetR family transcriptional regulator YP_003191968.1 PFAM: protein of unknown function UPF0060; KEGG: bsu:BSU08120 hypothetical protein YP_003191969.1 PFAM: protein of unknown function UPF0060; KEGG: bha:BH2744 hypothetical protein YP_003191971.1 KEGG: dal:Dalk_0684 hypothetical protein YP_003191972.1 PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_2931 protein of unknown function DUF81 YP_003191973.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: baa:BA_1329 MarR family YP_003191974.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: afw:Anae109_3644 regulatory protein ArsR YP_003191975.1 PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: tbd:Tbd_1428 arsenite S- adenosylmethyltransferase YP_003191976.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_3511 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003191977.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bsu:BSU27000 hypothetical protein YP_003191978.1 PFAM: NUDIX hydrolase; KEGG: bmj:BMULJ_04405 NUDIX hydrolase YP_003191980.1 PFAM: Protein of unknown function CGGC region; KEGG: gme:Gmet_3511 hypothetical protein YP_003191981.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: geo:Geob_2593 methyl-accepting chemotaxis sensory transducer YP_003191982.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bha:BH1936 spore germination protein KB YP_003191984.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bar:GBAA1980 hypothetical protein YP_003191985.1 KEGG: ecc:c2762 sensory histidine kinase AtoS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003191986.1 PFAM: protein of unknown function DUF1697; KEGG: bar:GBAA2742 hypothetical protein YP_003191987.1 PFAM: polysaccharide deacetylase; KEGG: baa:BA_2342 polysaccharide deacetylase YP_003191988.1 KEGG: Guanylate-binding protein, N-terminal domain-containing protein YP_003191989.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bsu:BSU27120 RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-V) YP_003191990.1 KEGG: bsu:BSU27130 hypothetical protein YP_003191993.1 PFAM: Resolvase domain; Recombinase; KEGG: bsu:BSU25770 site-specific DNA recombinase YP_003191994.1 KEGG: bar:GBAA4396 stage IV sporulation protein B; TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; SMART: PDZ/DHR/GLGF domain protein YP_003191995.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: bha:BH2776 DNA repair and genetic recombination YP_003191996.1 TIGRFAM: arginine repressor; PFAM: arginine repressor; KEGG: bha:BH2777 arginine repressor YP_003191997.1 PFAM: putative rRNA methylase; KEGG: gur:Gura_1022 putative rRNA methylase YP_003191998.1 PFAM: ATP-NAD/AcoX kinase; KEGG: gbm:Gbem_2445 ATP-NAD/AcoX kinase YP_003191999.1 KEGG: bha:BH2778 hemolysin-like protein; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein YP_003192000.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: gsu:GSU0686 1-deoxy-D-xylulose-5-phosphate synthase YP_003192001.1 KEGG: bha:BH2780 hypothetical protein YP_003192002.1 PFAM: Polyprenyl synthetase; KEGG: geo:Geob_2628 polyprenyl synthetase YP_003192003.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: dsh:Dshi_3296 exodeoxyribonuclease VII, small subunit YP_003192004.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: gbe:GbCGDNIH1_0051 methenyltetrahydrofolate cyclohydrolase YP_003192005.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: geo:Geob_1799 methylenetetrahydrofolate dehydrogenase (NADP(+)) YP_003192006.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: geo:Geob_3463 AAA ATPase central domain protein YP_003192007.1 PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein YP_003192008.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bsu:BSU18770 hypothetical protein YP_003192009.1 KEGG: bha:BH2783 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_003192012.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_003192013.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dal:Dalk_4359 oxidoreductase FAD/NAD(P)- binding domain protein YP_003192014.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: bha:BH2785 transcription antitermination protein NusB YP_003192017.1 PFAM: protein of unknown function DUF322; KEGG: bar:GBAA3995 hypothetical protein YP_003192018.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; RimK domain protein ATP-grasp; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: bha:BH2787 acetyl-CoA carboxylase biotin carboxylase subunit YP_003192019.1 catalyzes the formation of oxaloacetate from pyruvate YP_003192020.1 KEGG: bha:BH2790 mutants block sporulation after engulfment YP_003192021.1 TIGRFAM: stage III sporulation protein AG; KEGG: bha:BH2791 mutants block sporulation after engulfment YP_003192022.1 KEGG: bha:BH2792 mutants block sporulation after engulfment YP_003192023.1 TIGRFAM: stage III sporulation protein AE; KEGG: bar:GBAA4413 stage III sporulation protein AE YP_003192024.1 TIGRFAM: stage III sporulation protein AD; KEGG: bsu:BSU24400 mutants block sporulation after engulfment (stage III sporulation) YP_003192025.1 TIGRFAM: stage III sporulation protein AC; PFAM: Stage III sporulation AC family protein; KEGG: bha:BH2795 mutants block sporulation after engulfment YP_003192026.1 necessary for complete engulfment of forespore YP_003192027.1 TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase; KEGG: bha:BH2797 mutants block sporulation after engulfment YP_003192029.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicase ; helicase domain protein; AAA ATPase; KEGG: gbm:Gbem_1577 DEAD/H associated domain protein YP_003192030.1 PFAM: cell wall hydrolase/autolysin; peptidase M56 BlaR1; SMART: cell wall hydrolase/autolysin; KEGG: bar:GBAA1079 hypothetical protein YP_003192031.1 PFAM: Penicillinase repressor; KEGG: swd:Swoo_3737 CopY family transcriptional regulator YP_003192032.1 KEGG: bha:BH2358 hypothetical protein YP_003192034.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: mfa:Mfla_1220 type I restriction-modification system, M subunit YP_003192036.1 PFAM: restriction modification system DNA specificity domain; KEGG: mfa:Mfla_1216 restriction modification system DNA specificity subunit YP_003192037.1 PFAM: transposase IS3/IS911 family protein; KEGG: hha:Hhal_1144 transposase IS3/IS911 family protein YP_003192038.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: bar:GBAA1976 sensor histidine kinase YP_003192039.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: baa:BA_2476 REC, CheY-homologous receiver domain YP_003192040.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: gme:Gmet_2403 tetratricopeptide TPR_4 YP_003192041.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bar:GBAA3373 DNA-binding protein YP_003192042.1 PFAM: protein of unknown function DUF86; KEGG: ppd:Ppro_2947 hypothetical protein YP_003192044.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: gur:Gura_1654 NAD-dependent epimerase/dehydratase YP_003192045.1 KEGG: pat:Patl_0579 helix-turn-helix, type 11 YP_003192047.1 PFAM: peptidase C45 acyl-coenzyme A:6- aminopenicillanic acid acyl-transferase; KEGG: bra:BRADO2616 hypothetical protein YP_003192048.1 PFAM: regulatory protein TetR; KEGG: bar:GBAA4434 TetR family transcriptional regulator YP_003192049.1 KEGG: dol:Dole_0758 hypothetical protein YP_003192050.1 KEGG: acr:Acry_1564 S-isoprenylcysteine methyltransferase-like protein YP_003192051.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: dsh:Dshi_3961 MerR family transcriptional regulator YP_003192053.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bsu:BSU26340 hypothetical protein YP_003192054.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: azo:azo2486 putative phosphoenolpyruvate synthase YP_003192055.1 PFAM: regulatory protein TetR; KEGG: cti:RALTA_B1267 putative transcriptional regulator, TetR family YP_003192058.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003192059.1 PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein YP_003192060.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rru:Rru_A0188 ABC transporter, transmembrane region YP_003192061.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pst:PSPTO_2604 ABC transporter, ATP- binding/permease protein YP_003192062.1 TIGRFAM: conserved hypothetical protein YP_003192063.1 PFAM: O-methyltransferase family 2; Methyltransferase type 12; KEGG: pca:Pcar_0859 QbsJ-like methyltransferase YP_003192064.1 KEGG: hypothetical protein YP_003192068.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: ppd:Ppro_0982 prepilin peptidase YP_003192069.1 PFAM: type II secretion system protein; KEGG: pca:Pcar_0873 type II secretory pathway, PilC- like YP_003192070.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: pca:Pcar_0872 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway PilB-like YP_003192071.1 KEGG: pca:Pcar_0871 putative protein transport, PilT-like; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_003192072.1 KEGG: scl:sce7859 putative secreted protein YP_003192073.1 PFAM: Fimbrial assembly family protein; KEGG: pca:Pcar_0867 hypothetical protein YP_003192074.1 KEGG: pca:Pcar_0866 hypothetical protein YP_003192075.1 KEGG: pca:Pcar_0865 hypothetical protein YP_003192076.1 KEGG: ppd:Ppro_0806 hypothetical protein YP_003192077.1 TIGRFAM: thiazolinyl imide reductase; PFAM: oxidoreductase domain protein; KEGG: ypy:YPK_0754 thiazolinyl imide reductase YP_003192078.1 PFAM: Saccharopine dehydrogenase; KEGG: pfl:PFL_3491 hypothetical protein YP_003192079.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Methyltransferase type 12; Non-ribosomal peptide synthetase; condensation domain protein; KEGG: pfl:PFL_3492 pyochelin synthetase F YP_003192080.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Non- ribosomal peptide synthetase; phosphopantetheine-binding; condensation domain protein; KEGG: dde:Dde_1609 amino acid adenylation YP_003192081.1 PFAM: AMP-dependent synthetase and ligase; Chorismate binding-like; KEGG: pau:PA14_54940 putative siderophore biosynthesis enzyme YP_003192082.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: mes:Meso_2583 4'-phosphopantetheinyl transferase YP_003192083.1 TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cysteine synthases family protein YP_003192084.1 PFAM: Thioesterase; KEGG: scl:sce0356 thioesterase YP_003192085.1 PFAM: helix-turn-helix- domain-containing protein AraC type; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: dds:Ddes_0430 transcriptional regulator, AraC family YP_003192086.1 PFAM: S-layer domain protein; cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: hypothetical protein YP_003192089.1 KEGG: hap:HAPS_1415 hypothetical protein YP_003192090.1 KEGG: pna:Pnap_1140 putative ATP-binding protein YP_003192092.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003192093.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: gme:Gmet_3484 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003192095.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_003192096.1 PFAM: peptidase M24; creatinase; KEGG: bar:GBAA4422 proline dipeptidase YP_003192097.1 KEGG: gme:Gmet_0981 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase class II YP_003192098.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: gme:Gmet_0947 peptidase U62, modulator of DNA gyrase YP_003192099.1 KEGG: bsu:BSU16880 hypothetical protein YP_003192100.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: gme:Gmet_2720 microcin-processing peptidase 2 YP_003192101.1 KEGG: dat:HRM2_11010 PilO YP_003192103.1 KEGG: gbm:Gbem_1546 type IV pilus assembly protein PilM YP_003192104.1 KEGG: aeh:Mlg_0861 Tfp pilus assembly protein PilX- like protein YP_003192105.1 KEGG: nha:Nham_0736 putative general secretion pathway protein J YP_003192106.1 KEGG: sat:SYN_01760 hypothetical protein YP_003192107.1 KEGG: sat:SYN_01761 pilin assembly protein YP_003192108.1 KEGG: mmr:Mmar10_2778 general secretion pathway protein G YP_003192109.1 PFAM: type II secretion system protein; KEGG: sat:SYN_01284 general secretion pathway protein F YP_003192112.1 KEGG: bja:bll5201 hypothetical protein YP_003192113.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bsu:BSU03720 germination response to the combination of glucose, fructose, L-asparagine, and KCl YP_003192114.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: dol:Dole_0755 NifU domain-containing protein YP_003192115.1 PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin YP_003192116.1 TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: ppd:Ppro_1133 desulfoferrodoxin YP_003192117.1 KEGG: pca:Pcar_0424 hypothetical protein YP_003192118.1 PFAM: Rubrerythrin; KEGG: pca:Pcar_2346 rubrerythrin YP_003192119.1 PFAM: Coat F domain protein; KEGG: bha:BH3888 hypothetical protein YP_003192122.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: baa:BA_0179 CrcB-like protein YP_003192123.1 PFAM: Camphor resistance CrcB protein; KEGG: aca:ACP_3316 CrcB protein YP_003192124.1 PFAM: UspA domain protein; KEGG: gme:Gmet_3028 hypothetical protein YP_003192125.1 KEGG: bsu:BSU40630 hypothetical protein YP_003192126.1 KEGG: baa:BA_0523 DUF1, domain of unknown Function with GGDEF motif; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; 5TM Receptors of the LytS-YhcK type transmembrane region; SMART: GGDEF domain-containing protein YP_003192128.1 KEGG: dvm:DvMF_1877 hypothetical protein YP_003192129.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: bsu:BSU18830 phosphoenolpyruvate synthase YP_003192130.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bar:GBAA4920 DNA-binding response regulator YP_003192131.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: bar:GBAA4921 sensor histidine kinase YP_003192132.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: abu:Abu_0854 2-oxoglutarate-acceptor oxidoreductase subunit OorD YP_003192134.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5645 carbohydrate ABC transporter YP_003192135.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter YP_003192136.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dat:HRM2_38070 transcriptional regulator (MarR family protein) YP_003192137.1 PFAM: Chromate transporter; KEGG: csa:Csal_1741 chromate transporter YP_003192138.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: gur:Gura_4161 GntR family transcriptional regulator YP_003192139.1 KEGG: mch:Mchl_2163 beta-ribofuranosylaminobenzene 5'-phosphate synthase family YP_003192140.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: hap:HAPS_1994 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_003192141.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_1286 alcohol dehydrogenase GroES- like YP_003192142.1 PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: bar:GBAA2982 aldolase YP_003192144.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: gur:Gura_0375 methyl-accepting chemotaxis sensory transducer YP_003192145.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: geo:Geob_0895 general secretory pathway protein E YP_003192146.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_003192147.1 KEGG: gsu:GSU1490 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase YP_003192148.1 TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: bar:GBAA4563 hydrolase HAD subfamily IIIA YP_003192149.1 TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: yen:YE2717 cobalt-precorrin-6x reductase YP_003192150.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: gur:Gura_1955 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_003192151.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dal:Dalk_0952 transcriptional regulator, Crp/Fnr family YP_003192154.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: baa:BA_0980 E1-E2_ATPase, E1-E2 ATPase YP_003192155.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003192157.1 KEGG: hypothetical protein YP_003192162.1 PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: abu:Abu_0831 two-component response regulator YP_003192163.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bha:BH2752 two-component sensor histidine kinase YP_003192166.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_003192167.1 PFAM: aldo/keto reductase; KEGG: sfu:Sfum_1328 aldo/keto reductase YP_003192168.1 PFAM: regulatory protein TetR; KEGG: sus:Acid_6731 TetR family transcriptional regulator YP_003192169.1 PFAM: isochorismatase hydrolase; KEGG: bxe:Bxe_C0259 isochorismatase hydrolase family protein YP_003192170.1 PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: bar:GBAA1858 major facilitator family transporter YP_003192171.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: sat:SYN_02592 N-(5'- phosphoribosyl)anthranilate isomerase YP_003192172.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: sat:SYN_02591 indole-3-glycerol phosphate synthase YP_003192173.1 TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; KEGG: sat:SYN_02590 anthranilate phosphoribosyltransferase YP_003192174.1 PFAM: Resolvase domain; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: xfm:Xfasm12_1564 hypothetical protein YP_003192175.1 PFAM: plasmid stabilization system YP_003192176.1 TIGRFAM: prevent-host-death family protein; KEGG: ccv:CCV52592_2220 prevent-host-death family protein YP_003192177.1 KEGG: zmo:ZMO0695 hypothetical protein YP_003192178.1 KEGG: glo:Glov_0283 YcgL YP_003192179.1 KEGG: azc:AZC_1281 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003192180.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sfu:Sfum_1142 transcriptional regulator, MarR family YP_003192182.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1900 ABC transporter ATP-binding protein YP_003192184.1 PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B0953 TetR family transcriptional regulator YP_003192185.1 PFAM: regulatory protein MarR; Penicillinase repressor; SMART: regulatory protein MarR; KEGG: gur:Gura_1130 MarR family transcriptional regulator YP_003192186.1 TIGRFAM: RNA polymerase sigma-K factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bha:BH1285 sporulation sigma factor SigK YP_003192188.1 PFAM: isochorismatase hydrolase; KEGG: sun:SUN_0927 isochorismatase hydrolase YP_003192189.1 KEGG: dat:HRM2_38940 putative uroporphyrinogen-III decarboxylase YP_003192190.1 PFAM: amino acid permease-associated region; KEGG: bte:BTH_II1560 amino acid permease YP_003192191.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_2896 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003192193.1 PFAM: CBS domain-containing protein; SMART: CBS domain-containing protein; KEGG: sfu:Sfum_2202 CBS domain-containing membrane protein YP_003192194.1 Contains selenocysteine; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dat:HRM2_32850 PrxU YP_003192196.1 PFAM: ABC-2 type transporter; KEGG: sat:SYN_00244 export ABC transporter permease protein YP_003192197.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_3276 ABC transporter related protein YP_003192198.1 PFAM: secretion protein HlyD family protein; KEGG: glo:Glov_3107 secretion protein HlyD family protein YP_003192200.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: sus:Acid_1556 peptidyl-arginine deiminase YP_003192201.1 PFAM: iron dependent repressor; SMART: iron dependent repressor; KEGG: bha:BH2807 manganese transport transcriptional regulator YP_003192202.1 KEGG: pca:Pcar_2753 hypothetical protein; TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-3 domain protein; GAF domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; PAC repeat-containing protein; GAF domain protein; PAS domain-containing protein YP_003192203.1 KEGG: bar:GBAA5059 hypothetical protein YP_003192204.1 KEGG: bar:GBAA5058 putative lipoprotein YP_003192205.1 PFAM: AIG2 family protein; KEGG: bba:Bd0269 hypothetical protein YP_003192206.1 PFAM: Methyltransferase type 12; KEGG: bar:GBAA5083 ribosomal RNA adenine dimethylase domain-containing protein YP_003192207.1 PFAM: major facilitator superfamily MFS_1; KEGG: sat:SYN_01218 fosmidomycin resistance protein YP_003192208.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: bsu:BSU10110 penicillin-binding protein 2C YP_003192211.1 PFAM: O-methyltransferase family 3; Methyltransferase type 11; putative methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: bha:BH1272 O-methyltransferase YP_003192213.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: gbm:Gbem_2040 2-hydroxyglutaryl-CoA dehydratase D-component YP_003192215.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_1962 ABC transporter-related protein YP_003192216.1 PFAM: inner-membrane translocator; KEGG: rle:pRL120201 putative permease component of ABC transporter YP_003192217.1 PFAM: inner-membrane translocator; KEGG: avi:Avi_5970 ABC transporter membrane spanning protein (sugar) YP_003192218.1 KEGG: nam:NAMH_1388 HAD fAmily hydrolase fragment YP_003192219.1 PFAM: isochorismatase hydrolase; KEGG: sfu:Sfum_2603 isochorismatase hydrolase YP_003192221.1 PFAM: metallophosphoesterase; KEGG: acid phosphatase YP_003192222.1 PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2176 glycosyl transferase family protein YP_003192223.1 KEGG: gbm:Gbem_2578 hypothetical protein YP_003192224.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class V; Cys/Met metabolism pyridoxal- phosphate-dependent protein; KEGG: bja:blr3650 polysaccharide biosynthesis protein YP_003192225.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3805 glycosyl transferase family protein YP_003192226.1 PFAM: glycosyl transferase group 1; KEGG: fph:Fphi_1475 glycosyl transferase, group 1 YP_003192227.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gur:Gura_3780 NAD-dependent epimerase/dehydratase YP_003192228.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pub:SAR11_0558 cyclopropane-fatty-acyl- phospholipid YP_003192229.1 KEGG: glo:Glov_1957 methyltransferase type 11 YP_003192230.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gsu:GSU0627 GDP-fucose synthetase YP_003192231.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_1311 GDP-mannose 4,6-dehydratase YP_003192232.1 PFAM: polysaccharide biosynthesis protein; KEGG: pin:Ping_0778 polysaccharide biosynthesis protein YP_003192233.1 KEGG: sun:SUN_0324 mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein YP_003192234.1 KEGG: sus:Acid_6697 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase YP_003192235.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: pla:Plav_3071 membrane bound O-acyl transferase MBOAT family protein YP_003192236.1 KEGG: hch:HCH_04699 hypothetical protein YP_003192237.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: sus:Acid_7617 phosphoesterase, PA-phosphatase related YP_003192238.1 KEGG: aba:Acid345_0662 parallel beta-helix repeat protein YP_003192239.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: ppu:PP_0501 NAD-dependent epimerase/dehydratase YP_003192240.1 PFAM: sugar transferase; KEGG: pca:Pcar_1519 sugar transferase YP_003192241.1 KEGG: afw:Anae109_2634 hypothetical protein YP_003192242.1 PFAM: glycosyl transferase group 1; KEGG: gox:GOX1354 lipopolysaccharide biosynthesis protein YP_003192243.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: aba:Acid345_3097 NAD-dependent epimerase/dehydratase YP_003192244.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bsu:BSU36260 hypothetical protein YP_003192245.1 PFAM: SH3 type 3 domain protein; SH3 domain protein; SMART: SH3 domain protein; KEGG: dol:Dole_1940 SH3 type 3 domain-containing protein YP_003192246.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: cja:CJA_2345 rhodanese-like domain protein YP_003192247.1 PFAM: glycosyl transferase group 1; KEGG: pca:Pcar_2590 glycosyltransferase YP_003192248.1 TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; KEGG: mex:Mext_2395 glucose-1-phosphate thymidylyltransferase YP_003192249.1 PFAM: glycosyl transferase group 1; KEGG: lch:Lcho_3084 glycosyl transferase group 1 YP_003192250.1 KEGG: sfu:Sfum_2186 hypothetical protein YP_003192251.1 KEGG: sus:Acid_4597 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase YP_003192252.1 PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: bha:BH3718 capsular polysaccharide biosynthesis YP_003192255.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: neu:NE1054 putative alginate O-acetylation protein YP_003192256.1 TIGRFAM: YD repeat protein; PFAM: virulence plasmid 65kDa B protein; YD repeat- containing protein; KEGG: reh:H16_B1352 insecticidal toxin complex protein YP_003192257.1 PFAM: virulence plasmid 28.1 kDa A protein; KEGG: scl:sce8561 putative toxin subunit YP_003192258.1 SMART: Hedgehog/intein hint domain protein YP_003192259.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: geo:Geob_1980 cysteine desulfurase NifS YP_003192260.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_1830 secretion protein HlyD YP_003192261.1 PFAM: protein of unknown function DUF214; KEGG: sat:SYN_00284 permease YP_003192262.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acp:A2cp1_2841 ABC transporter related YP_003192263.1 PFAM: glutamine amidotransferase class-I; KEGG: maq:Maqu_2155 glutamine amidotransferase YP_003192264.1 PFAM: protein of unknown function DUF89; KEGG: nam:NAMH_1458 protein of unknown function DUF89 YP_003192265.1 PFAM: PepSY-associated TM helix domain protein YP_003192266.1 Converts isocitrate to alpha ketoglutarate YP_003192267.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dal:Dalk_1512 GCN5-related N- acetyltransferase YP_003192268.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; KEGG: baa:BA_2006 hypothetical protein YP_003192269.1 PFAM: protein of unknown function DUF456; KEGG: xca:xccb100_2877 hypothetical protein YP_003192270.1 PFAM: helix-turn-helix- domain-containing protein AraC type; Cupin 2 conserved barrel domain protein; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: mmw:Mmwyl1_1173 cupin 2 domain-containing protein YP_003192271.1 PFAM: Tail Collar domain protein; KEGG: pna:Pnap_0595 phage tail collar domain- containing protein YP_003192272.1 PFAM: Tail Collar domain protein; KEGG: pna:Pnap_4767 phage tail collar domain- containing protein YP_003192273.1 PFAM: Tail Collar domain protein; KEGG: pna:Pnap_4722 phage tail collar domain- containing protein YP_003192274.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: gur:Gura_0755 coagulation factor 5/8 type domain-containing protein YP_003192275.1 PFAM: protein of unknown function DUF291; GLUG domain protein; KEGG: mms:mma_0761 haemagglutinin-like protein YP_003192277.1 KEGG: sfu:Sfum_2373 HPr kinase YP_003192278.1 KEGG: sfu:Sfum_3985 hypothetical protein YP_003192280.1 KEGG: ppd:Ppro_0062 hypothetical protein YP_003192281.1 KEGG: rms:RMA_0714 phage-associated protein YP_003192283.1 KEGG: bha:BH2521 transposase (21) YP_003192285.1 KEGG: aci:ACIAD2705 hypothetical protein YP_003192286.1 TIGRFAM: YD repeat protein; KEGG: hch:HCH_05643 rhs family protein YP_003192288.1 KEGG: hypothetical protein YP_003192289.1 KEGG: chromosome partition protein smc homolog YP_003192290.1 KEGG: bha:BH2521 transposase (21) YP_003192293.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; KEGG: baa:BA_2004 HATPase_c, histidine kinase-like ATPases YP_003192294.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bar:GBAA3661 DNA-binding response regulator YP_003192295.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: baa:BA_0873 Band_7, SPFH domain / band 7 family YP_003192296.1 KEGG: baa:BA_0872 hypothetical protein YP_003192297.1 PFAM: protein of unknown function DUF214; KEGG: sat:SYN_01995 export ABC transporter permease protein YP_003192298.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ank:AnaeK_3059 ABC transporter-related protein YP_003192299.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aca:ACP_0524 efflux transporter, RND family, MFP subunit YP_003192300.1 PFAM: protein of unknown function DUF1121; KEGG: gur:Gura_4126 hypothetical protein YP_003192305.1 PFAM: protein of unknown function DUF81; KEGG: dvm:DvMF_2192 protein of unknown function DUF81 YP_003192306.1 PFAM: Protein of unknown function DUF1847; KEGG: pca:Pcar_3053 hypothetical protein YP_003192307.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide- binding; KEGG: aba:Acid345_0362 transcriptional regulator, Crp/Fnr family YP_003192308.1 PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: sat:SYN_01742 UDP-N-acetylmuramoylalanyl-D- glutamyl-2,6-diaminopimelate--D-alanyl- D-alanyl ligase YP_003192309.1 KEGG: bsu:BSU09770 hypothetical protein YP_003192310.1 KEGG: dat:HRM2_03800 KamA1; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_003192311.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pca:Pcar_0423 transcriptional regulator YP_003192312.1 KEGG: pca:Pcar_0888 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_003192313.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_43430 4Fe-4S iron-sulfur binding protein (ferredoxin) YP_003192314.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gsu:GSU1237 pyridine nucleotide-disulphide oxidoreductase family protein YP_003192315.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: baa:BA_0625 hypothetical protein YP_003192316.1 PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: gur:Gura_2054 hypothetical protein YP_003192317.1 KEGG: Os05g0502500; hypothetical protein YP_003192318.1 PFAM: glycoside hydrolase 15-related; KEGG: afw:Anae109_3332 carbohydrate-binding family 6 protein YP_003192319.1 KEGG: dol:Dole_0046 hypothetical protein YP_003192320.1 PFAM: homocysteine S-methyltransferase; cobalamin B12-binding domain protein; Methionine synthase B12- binding module cap domain protein; dihydropteroate synthase DHPS; KEGG: gsu:GSU2921 5-methyltetrahydrofolate- homocysteine methyltransferase, truncation YP_003192321.1 PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_2638 transposase, IS4 family protein YP_003192323.1 PFAM: SNARE associated Golgi protein; KEGG: bsu:BSU28970 hypothetical protein YP_003192324.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_003192325.1 TIGRFAM: CDP-diacylglycerol/serine O- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bha:BH1310 phosphatidylserine synthase YP_003192326.1 KEGG: hypothetical protein ; K03846 alpha-1,2- mannosyltransferase YP_003192327.1 KEGG: gdj:Gdia_2198 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003192331.1 PFAM: GerA spore germination protein; KEGG: bsu:BSU03700 germination response to the combination of glucose, fructose, L-asparagine, and KCl YP_003192332.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bsu:BSU17760 hypothetical protein YP_003192333.1 TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: bsu:BSU07780 hypothetical protein YP_003192334.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: sat:SYN_02931 putative cytoplasmic protein YP_003192335.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dps:DP1483 molybdenum cofactor biosynthesis protein C (MoaC) YP_003192336.1 KEGG: sat:SYN_01960 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003192337.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gur:Gura_2387 two component, sigma-54 specific, fis family transcriptional regulator YP_003192338.1 PFAM: ATP-binding region ATPase domain protein; GAF domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: gme:Gmet_1054 GAF sensor signal transduction histidine kinase YP_003192339.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gme:Gmet_1053 iron-containing alcohol dehydrogenase YP_003192340.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: geo:Geob_0268 iron-containing alcohol dehydrogenase YP_003192341.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bar:GBAA5115 cold shock protein CspD YP_003192342.1 PFAM: NLP/P60 protein; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bha:BH3671 cell wall lytic activity YP_003192343.1 PFAM: Resolvase domain; Recombinase; KEGG: ppd:Ppro_0273 resolvase domain-containing protein YP_003192344.1 KEGG: vei:Veis_4171 hypothetical protein YP_003192345.1 PFAM: SMC domain protein; KEGG: vei:Veis_4170 hypothetical protein YP_003192348.1 TIGRFAM: CRISPR-associated protein, TIGR02710 family; KEGG: sat:SYN_02245 putative cytoplasmic protein YP_003192349.1 TIGRFAM: CRISPR-associated protein Cas6 YP_003192350.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: sfu:Sfum_1356 CRISPR-associated protein Cas2 YP_003192351.1 TIGRFAM: CRISPR-associated protein Cas1; CRISPR- associated protein Cas4; PFAM: protein of unknown function DUF48; protein of unknown function DUF83; KEGG: tgr:Tgr7_2433 CRISPR-associated Cas1/Cas4 family protein YP_003192352.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1795 CRISPR-associated RAMP protein, Cmr6 family YP_003192353.1 TIGRFAM: CRISPR-associated protein, Cmr5 family; KEGG: tgr:Tgr7_1794 CRISPR-associated protein, Cmr5 family YP_003192354.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1793 CRISPR-associated RAMP protein, Cmr4 family YP_003192355.1 KEGG: tgr:Tgr7_1792 hypothetical protein YP_003192356.1 TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: tgr:Tgr7_1791 CRISPR-associated protein, Crm2 family YP_003192357.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; KEGG: tgr:Tgr7_1790 CRISPR-associated RAMP protein, Cmr1 family YP_003192358.1 TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; KEGG: sfu:Sfum_1352 CRISPR-associated protein, TM1812 family YP_003192360.1 KEGG: shl:Shal_1755 hypothetical protein YP_003192361.1 KEGG: dia:Dtpsy_0973 hypothetical protein YP_003192362.1 KEGG: glo:Glov_0382 helix-turn-helix type 11 domain protein YP_003192363.1 KEGG: sfu:Sfum_2823 putative transcriptional regulator YP_003192364.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003192365.1 PFAM: stress protein; KEGG: baa:BA_0975 bacterial stress protein YP_003192366.1 KEGG: aci:ACIAD1964 putative protein kinase YP_003192367.1 KEGG: ypp:YPDSF_0379 hypothetical protein YP_003192368.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: yps:YPTB3462 putative tellurium resistance protein YP_003192369.1 PFAM: stress protein; KEGG: rru:Rru_A0892 stress protein YP_003192370.1 PFAM: stress protein; KEGG: bsu:BSU02910 hypothetical protein YP_003192371.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_2157 radical SAM domain protein YP_003192372.1 PFAM: peptidase M48 Ste24p; KEGG: hypothetical protein, conserved YP_003192373.1 PFAM: stress protein; KEGG: yps:YPTB0356 tellurium resistance protein YP_003192374.1 PFAM: NADPH-dependent FMN reductase; KEGG: dal:Dalk_3512 NADPH-dependent FMN reductase YP_003192375.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: cff:CFF8240_0666 CRISPR-associated protein Cas2 YP_003192376.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: cff:CFF8240_0665 CRISPR-associated protein Cas1 YP_003192377.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: cff:CFF8240_0664 CRISPR-associated protein Cas4 YP_003192378.1 KEGG: cha:CHAB381_0396 CRISPR-associated helicase Cas3 domain-containing protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicase YP_003192379.1 TIGRFAM: CRISPR-associated protein Cas5, Hmari subtype; CRISPR-associated protein Cas5; KEGG: cff:CFF8240_0662 CRISPR-associated protein Cas5, hmari subtype YP_003192380.1 KEGG: cff:CFF8240_0661 hypothetical protein YP_003192381.1 KEGG: cha:CHAB381_0399 hypothetical protein YP_003192382.1 KEGG: cha:CHAB381_0400 CRISPR-associated protein Cas6 YP_003192383.1 KEGG: mrd:Mrad2831_3211 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAS domain-containing protein; ATP-binding region ATPase domain protein YP_003192384.1 KEGG: baa:BA_1563 CheR methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003192385.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; KEGG: scl:sce7807 hypothetical protein YP_003192386.1 KEGG: baa:BA_1390 CotJB protein YP_003192388.1 TIGRFAM: death-on-curing family protein; KEGG: bmi:BMEA_A0594 death-on-curing family protein YP_003192389.1 PFAM: phosphatidylglycerophosphatase A; KEGG: bsu:BSU21830 hypothetical protein YP_003192391.1 PFAM: gas vesicle protein GVPa; KEGG: gur:Gura_2839 gas vesicle synthesis protein GvpA YP_003192392.1 KEGG: hypothetical protein YP_003192393.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: bar:GBAA3842 RNA-binding protein Hfq YP_003192394.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dal:Dalk_0737 helix-turn-helix domain protein YP_003192395.1 KEGG: gur:Gura_2842 AAA family ATPase, CDC48 subfamily protein; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; AAA ATPase VAT domain protein; SMART: AAA ATPase YP_003192396.1 KEGG: gur:Gura_2833 heat shock protein HSP20 YP_003192397.1 PFAM: gas vesicle protein GVPa; KEGG: gur:Gura_2825 gas vesicle protein GVPa YP_003192398.1 PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: gur:Gura_2826 gas vesicle synthesis GvpLGvpF YP_003192399.1 KEGG: gur:Gura_2827 hypothetical protein YP_003192400.1 PFAM: gas vesicle protein GVPa; KEGG: gur:Gura_2828 gas vesicle protein GVPa YP_003192402.1 PFAM: Gas vesicle G; KEGG: gur:Gura_2831 gas vesicle G YP_003192403.1 PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: gur:Gura_2834 gas vesicle synthesis GvpLGvpF YP_003192404.1 PFAM: Gas vesicle synthesis GvpLGvpF; heat shock protein DnaJ domain protein; KEGG: gur:Gura_2832 gas vesicle synthesis GvpLGvpF YP_003192406.1 KEGG: gur:Gura_2836 gas vesicle protein GvpN; TIGRFAM: gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003192408.1 PFAM: protein of unknown function DUF164; KEGG: dvm:DvMF_0258 protein of unknown function DUF164 YP_003192409.1 PFAM: protein of unknown function DUF34; KEGG: ban:BA4512 hypothetical protein YP_003192410.1 PFAM: protein of unknown function DUF633; KEGG: bar:GBAA4513 hypothetical protein YP_003192411.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_003192412.1 KEGG: bha:BH1375 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein YP_003192413.1 KEGG: dal:Dalk_0287 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003192414.1 PFAM: NADPH-dependent FMN reductase; KEGG: dps:DP1259 iron-sulfur flavoprotein YP_003192415.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: dol:Dole_1266 2'-5' RNA ligase YP_003192417.1 PFAM: SNARE associated Golgi protein; KEGG: bsu:BSU02280 hypothetical protein YP_003192419.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_003192420.1 PFAM: protein of unknown function DUF299; KEGG: bha:BH1373 hypothetical protein YP_003192421.1 PFAM: Helix-turn-helix type 11 domain protein; CBS domain-containing protein; regulatory protein DeoR; SMART: CBS domain-containing protein; KEGG: bsu:BSU25250 hypothetical protein YP_003192422.1 KEGG: sat:SYN_01537 glycyl-tRNA synthetase beta chain; TIGRFAM: glycyl-tRNA synthetase, beta subunit YP_003192423.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003192425.1 PFAM: polysaccharide deacetylase; KEGG: cha:CHAB381_0659 polysaccharide deacetylase YP_003192426.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gbm:Gbem_2628 transcriptional regulator, MarR family YP_003192427.1 PFAM: Fe-S cluster domain protein; KEGG: dat:HRM2_28850 putative CO dehydrogenase/acetyl-CoA synthase (Fe-S cluster family protein) YP_003192429.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: bsu:BSU13260 hypothetical protein YP_003192430.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bar:GBAA2212 DNA-binding response regulator YP_003192431.1 PFAM: ubiquitin-associated- domain-containing protein YP_003192432.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: nmu:Nmul_A1613 pyruvate, water dikinase YP_003192433.1 PFAM: regulatory protein TetR; KEGG: bja:bll6143 transcriptional regulatory protein YP_003192434.1 KEGG: dal:Dalk_3208 hypothetical protein YP_003192435.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sfu:Sfum_1907 transcriptional regulator, LysR family YP_003192436.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003192437.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: bha:BH1369 DNA repair protein RecO YP_003192438.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy- lyase; PFAM: flavoprotein; KEGG: stt:t2822 decarboxylase YP_003192439.1 KEGG: sus:Acid_4370 hypothetical protein YP_003192440.1 KEGG: gme:Gmet_2807 hypothetical protein YP_003192441.1 TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: bsu:BSU25290 GTP-binding protein Era YP_003192442.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: CDA; cytidine deaminase YP_003192443.1 PFAM: protein of unknown function UPF0054; KEGG: bar:GBAA4527 putative metalloprotease YP_003192444.1 KEGG: bsu:BSU25330 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase 7TM extracellular region; metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003192445.1 PFAM: PhoH family protein; KEGG: bar:GBAA4529 PhoH family protein YP_003192446.1 TIGRFAM: sporulation protein YqfD; PFAM: putative stage IV sporulation YqfD; KEGG: bha:BH1360 stage IV sporulation protein YP_003192447.1 TIGRFAM: sporulation protein YqfC; PFAM: protein of unknown function DUF1429; KEGG: bha:BH1359 hypothetical protein YP_003192448.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: glo:Glov_2813 CheW protein YP_003192450.1 TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase YP_003192451.1 Contains selenocysteine; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: sfu:Sfum_3401 selenide, water dikinase YP_003192452.1 PFAM: SirA family protein; KEGG: gsu:GSU2521 hypothetical protein YP_003192454.1 PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B; KEGG: bha:BH3475 hypothetical protein YP_003192456.1 KEGG: bsu:BSU14490 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain-containing protein YP_003192457.1 KEGG: aba:Acid345_0185 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; metal dependent phophohydrolase; PFAM: GGDEF domain-containing protein; metal- dependent phosphohydrolase HD sub domain; SMART: GGDEF domain-containing protein; metal- dependent phosphohydrolase HD region YP_003192458.1 KEGG: sfu:Sfum_0797 ferredoxin YP_003192459.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: baa:BA_1839 HATPase_c, histidine kinase-, DNA gyrase B-, phytochrome-like ATPase YP_003192460.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bha:BH1580 two-component response regulator YP_003192461.1 KEGG: IQ calmodulin-binding motif family protein YP_003192462.1 KEGG: bha:BH0020 inositol-5-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain-containing protein; SMART: CBS domain-containing protein YP_003192463.1 TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; KEGG: rpd:RPD_0651 phosphoglycerate mutase YP_003192464.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: gur:Gura_0043 putative L-threonine-O-3- phosphate decarboxylase YP_003192465.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: gur:Gura_4186 cobalamin 5'-phosphate synthase YP_003192466.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: bha:BH1898 cobyrinic acid a,c-diamide synthase YP_003192467.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: gme:Gmet_0486 adenosylcobinamide-phosphate synthase YP_003192468.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_003192469.1 PFAM: cobalbumin biosynthesis protein; KEGG: glo:Glov_3081 adenosylcobinamide kinase YP_003192471.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dvl:Dvul_2305 phosphotransferase domain- containing protein YP_003192472.1 PFAM: peptidase M19 renal dipeptidase; KEGG: aba:Acid345_2579 membrane dipeptidase YP_003192473.1 PFAM: Stage V sporulation protein S; KEGG: bsu:BSU16980 required for dehydratation of the spore core and assembly of the coat (stage V sporulation) YP_003192474.1 PFAM: metallophosphoesterase; KEGG: gsu:GSU1138 Ser/Thr protein phosphatase family protein YP_003192476.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_003192477.1 PFAM: regulatory protein RecX; KEGG: dat:HRM2_18750 RecX YP_003192478.1 KEGG: bha:BH2383 recombinase A; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_003192479.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: bha:BH2384 ATP-dependent RNA helicase YP_003192480.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: bsu:BSU16930 competence damage-inducible protein A YP_003192481.1 KEGG: bha:BH0085 cell-division protein (ATP- dependent Zn metallopeptidase); PFAM: AAA ATPase central domain protein; peptidase M41; SMART: AAA ATPase YP_003192484.1 KEGG: bha:BH2386 phosphatidylglycerophosphate synthase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_003192485.1 KEGG: gsu:GSU3205 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB YP_003192486.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_003192487.1 SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_1659 helix-turn-helix domain protein YP_003192488.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_003192489.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bha:BH2395 hypothetical protein YP_003192490.1 KEGG: sus:Acid_5064 undecaprenyl-diphosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_003192493.1 PFAM: Citrate transporter; Arsenical pump membrane protein; KEGG: baa:BA_0017 arsenical pump membrane protein YP_003192494.1 PFAM: Citrate transporter; Arsenical pump membrane protein; KEGG: baa:BA_0017 arsenical pump membrane protein YP_003192495.1 KEGG: similar to mucin 17 YP_003192496.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sat:SYN_02803 glycosyltransferase YP_003192497.1 KEGG: aav:Aave_1288 glycosyl transferase family protein YP_003192498.1 PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0585 hypothetical protein YP_003192501.1 PFAM: glycosyl transferase family 2; KEGG: sat:SYN_02803 glycosyltransferase YP_003192502.1 KEGG: pfl:PFL_3459 acetyltransferase YP_003192503.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sus:Acid_7735 radical SAM domain-containing protein YP_003192504.1 SMART: helix-turn-helix domain protein; KEGG: bsu:BSU18740 hypothetical protein YP_003192505.1 KEGG: bsu:BSU18730 hypothetical protein YP_003192506.1 KEGG: sat:SYN_01004 protein involved in biosynthesis of molybdopterin YP_003192507.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: bha:BH3001 maltose transacetylase (maltose O- acetyltransferase) YP_003192508.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dal:Dalk_2340 metal dependent phosphohydrolase YP_003192509.1 PFAM: protein of unknown function DUF1121; KEGG: dal:Dalk_2774 protein of unknown function DUF1121 YP_003192510.1 PFAM: major facilitator superfamily MFS_1; KEGG: bar:GBAA2628 permease, putative YP_003192511.1 PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; KEGG: bar:GBAA4477 N-acetylglucosaminyl transferase YP_003192513.1 KEGG: bar:GBAA3129 hypothetical protein YP_003192514.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: bar:GBAA2050 magnesium transporter CorA family protein YP_003192515.1 PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein YP_003192517.1 KEGG: hypothetical protein YP_003192518.1 PFAM: Resolvase domain; Recombinase; KEGG: mgm:Mmc1_2087 recombinase YP_003192519.1 KEGG: rpi:Rpic_3191 hypothetical protein YP_003192521.1 KEGG: plu:plu3523 hypothetical protein YP_003192522.1 KEGG: rpi:Rpic_1575 hypothetical protein YP_003192523.1 KEGG: plu:plu3521 hypothetical protein YP_003192524.1 KEGG: rde:RD1_C0002 virD4 protein, putative YP_003192526.1 KEGG: bha:BH0859 hypothetical protein YP_003192527.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: ade:Adeh_3723 cyclic nucleotide-binding domain-containing protein YP_003192528.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: bha:BH2398 hypothetical protein YP_003192529.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_003192530.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_003192531.1 KEGG: dde:Dde_0254 aspartate semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding YP_003192532.1 involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme YP_003192533.1 catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance YP_003192534.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_003192535.1 KEGG: rfe:RF_1004 small heat shock protein YP_003192537.1 PFAM: protein of unknown function DUF114; KEGG: cco:CCC13826_1629 R2.LlaJI YP_003192538.1 PFAM: heat shock protein Hsp20; KEGG: ppd:Ppro_3076 heat shock protein HSP20 YP_003192539.1 TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein; KEGG: bha:BH2404 hypothetical protein YP_003192541.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: rce:RC1_3043 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_003192542.1 PFAM: peptidase M16 domain protein; KEGG: bar:GBAA3942 zinc protease YP_003192543.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: ppu:PP_4803 serine-type D-Ala-D-Ala carboxypeptidase YP_003192544.1 PFAM: polysaccharide deacetylase; KEGG: bsu:BSU16700 hypothetical protein YP_003192545.1 KEGG: bha:BH2407 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: RNA binding S1 domain protein; KH domain protein YP_003192546.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: bha:BH2408 30S ribosomal protein S15 YP_003192549.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: pca:Pcar_2151 riboflavin biosynthesis protein RibF YP_003192550.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; PUA domain-containing protein; KEGG: gme:Gmet_1589 tRNA pseudouridine synthase B YP_003192551.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: gsu:GSU1590 DHH domain-containing protein YP_003192552.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: bha:BH2411 ribosome-binding factor A YP_003192553.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; Miro domain protein; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; KEGG: bha:BH2413 translation initiation factor IF-2 YP_003192554.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: bar:GBAA3951 hypothetical protein YP_003192555.1 PFAM: protein of unknown function DUF448; KEGG: bha:BH2415 hypothetical protein YP_003192556.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_003192557.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_003192558.1 KEGG: bha:BH3635 transposase (07) YP_003192560.1 PFAM: Radical SAM domain protein; cobalamin B12- binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dal:Dalk_5142 radical SAM domain protein YP_003192561.1 PFAM: Protein of unknown function CGGC region; KEGG: pca:Pcar_1583 metal-binding protein YP_003192562.1 PFAM: amino acid permease-associated region; KEGG: gur:Gura_1386 amino acid permease-associated region YP_003192563.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bha:BH3839 two-component sensor histidine kinase YP_003192564.1 PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B YP_003192565.1 PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: glo:Glov_3544 two component transcriptional regulator, LytTR family YP_003192566.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon- binding domain protein; KEGG: gme:Gmet_1354 prolyl-tRNA synthetase YP_003192567.1 KEGG: gme:Gmet_1353 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase; PFAM: IspG family protein YP_003192568.1 KEGG: afw:Anae109_1161 putative membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein YP_003192569.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_003192570.1 TIGRFAM: sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: bha:BH0463 hypothetical protein YP_003192571.1 PFAM: phosphatidate cytidylyltransferase; KEGG: bar:GBAA3960 phosphatidate cytidylyltransferase YP_003192572.1 KEGG: bha:BH2423 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003192573.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_03059 ferridoxin YP_003192574.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_003192575.1 Catalyzes the phosphorylation of UMP to UDP YP_003192576.1 TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: gme:Gmet_1251 elongation factor Ts YP_003192577.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: bha:BH2427 30S ribosomal protein S2 YP_003192578.1 TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: bha:BH1354 30S ribosomal protein S21 YP_003192579.1 PFAM: histidine triad (HIT) protein; KEGG: mmw:Mmwyl1_2991 histidine triad (HIT) protein YP_003192580.1 KEGG: bha:BH1351 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB- like tRNA modifying enzyme; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003192581.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_003192582.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_003192583.1 KEGG: bha:BH1348 heat-shock protein (activation of DnaK); TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_003192584.1 TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: bha:BH1346 class I heat-shock protein (chaperonin) YP_003192585.1 PFAM: GrpE protein; KEGG: bsu:BSU25480 heat-shock protein YP_003192586.1 PFAM: chaperonin Cpn60/TCP-1; KEGG: hypothetical protein ; K09495 T-complex protein 1 subunit gamma YP_003192587.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: bha:BH1344 heat-inducible transcription repressor YP_003192588.1 KEGG: gsu:GSU0030 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003192589.1 TIGRFAM: GTP-binding protein LepA; small GTP- binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; KEGG: bha:BH1342 GTP-binding protein LepA YP_003192591.1 KEGG: cbg:CbuG_1666 hypothetical cytosolic protein YP_003192592.1 TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation P family protein; KEGG: bsu:BSU25530 required for dissolution of the septal cell wall (stage II sporulation) YP_003192593.1 PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein YP_003192594.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: aha:AHA_2853 HD domain-containing protein YP_003192595.1 KEGG: abu:Abu_0940 adhesin/hemagglutinin YP_003192596.1 KEGG: GM23411 gene product from transcript GM23411- RA YP_003192597.1 PFAM: VanW family protein; KEGG: baa:BA_1185 hypothetical protein YP_003192599.1 PFAM: TrkA-C domain protein; KEGG: bsu:BSU09860 hypothetical protein YP_003192600.1 PFAM: sodium/hydrogen exchanger; KEGG: bar:GBAA5286 sodium/hydrogen exchanger family protein YP_003192601.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: noc:Noc_2206 AbrB family transcriptional regulator YP_003192602.1 KEGG: gsu:GSU1492 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_003192603.1 KEGG: geo:Geob_0072 cell wall/surface repeat protein YP_003192604.1 KEGG: sfu:Sfum_2554 hypothetical protein YP_003192605.1 KEGG: smt:Smal_0854 outer membrane autotransporter barrel domain protein YP_003192606.1 KEGG: ppd:Ppro_1656 pilin domain-containing protein YP_003192607.1 KEGG: mfa:Mfla_2457 type II and III secretion system protein YP_003192609.1 KEGG: sfr:Sfri_0372 pilus assembly protein, PilO YP_003192610.1 PFAM: Fimbrial assembly family protein; KEGG: pag:PLES_54331 type 4 fimbrial biogenesis protein PilN YP_003192611.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: pca:Pcar_2138 Tfp pilus assembly protein, ATPase PilM YP_003192612.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bha:BH1538 sporulation sigma factor SigF YP_003192613.1 PFAM: type II secretion system protein; KEGG: gsu:GSU1493 type IV pilus biogenesis protein PilC YP_003192614.1 KEGG: lhk:LHK_00032 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_003192615.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: glo:Glov_1653 type IV-A pilus assembly ATPase PilB YP_003192616.1 PFAM: membrane protein of unknown function; KEGG: aca:ACP_1958 hypothetical protein YP_003192617.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: bha:BH1339 30S ribosomal protein S20 YP_003192618.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: apj:APJL_0871 filamentation induced by cAMP protein Fic-like protein YP_003192619.1 KEGG: cha:CHAB381_0330 hypothetical protein YP_003192620.1 PFAM: HIRAN; KEGG: dat:HRM2_19300 hypothetical protein YP_003192621.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: bar:GBAA0575 methyl-accepting chemotaxis protein YP_003192622.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: gur:Gura_3132 DNA polymerase III, delta subunit YP_003192623.1 PFAM: protein of unknown function DUF77; KEGG: afw:Anae109_1310 hypothetical protein YP_003192624.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003192625.1 TIGRFAM: capsular exopolysaccharide family; KEGG: bha:BH3668 capsular polysaccharide biosynthesis YP_003192626.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bsu:BSU36260 hypothetical protein YP_003192627.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3988 ABC transporter related YP_003192628.1 KEGG: gur:Gura_2702 hypothetical protein YP_003192629.1 PFAM: asparagine synthase; KEGG: gur:Gura_1346 asparagine synthase YP_003192631.1 KEGG: gur:Gura_1356 hypothetical protein YP_003192632.1 KEGG: ppd:Ppro_0048 hypothetical protein YP_003192633.1 KEGG: ppd:Ppro_0056 HPr kinase YP_003192634.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bsu:BSU08300 hypothetical protein YP_003192636.1 KEGG: sfu:Sfum_1664 two component transcriptional regulator, LuxR family YP_003192637.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: bsu:BSU08300 hypothetical protein YP_003192638.1 KEGG: bha:BH2521 transposase (21) YP_003192639.1 KEGG: glo:Glov_2447 hypothetical protein YP_003192640.1 ACT domain-containing protein YP_003192641.1 PFAM: protein of unknown function DUF711; KEGG: pca:Pcar_2119 hypothetical protein YP_003192642.1 PFAM: Recombinase; Resolvase domain; KEGG: bja:bll1540 hypothetical protein YP_003192647.1 KEGG: bph:Bphy_7609 resolvase domain-containing protein YP_003192648.1 KEGG: glo:Glov_2858 hypothetical protein YP_003192649.1 KEGG: cha:CHAB381_0330 hypothetical protein YP_003192651.1 KEGG: viral A-type inclusion protein YP_003192653.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: rpe:RPE_2167 DEAD/DEAH box helicase domain protein YP_003192654.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: eli:ELI_08230 DNA-methyltransferase YP_003192655.1 KEGG: hha:Hhal_0784 transposase, IS4 family protein YP_003192656.1 SMART: Tetratricopeptide domain protein; KEGG: msl:Msil_3125 tetratricopeptide domain protein YP_003192657.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: ppd:Ppro_1379 DNA internalization-related competence protein ComEC/Rec2 YP_003192658.1 KEGG: bsu:BSU25590 unspecific high-affinity DNA- binding protein; TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1 YP_003192659.1 PFAM: protein of unknown function DUF421; KEGG: bha:BH1232 hypothetical protein YP_003192660.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_003192661.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: bha:BH1328 hypothetical protein YP_003192662.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bar:GBAA4557 hypothetical protein YP_003192663.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: dds:Ddes_1927 RNP-1 like RNA-binding protein YP_003192664.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_003192665.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_003192666.1 TIGRFAM: GTP-binding protein Obg/CgtA; small GTP- binding protein; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; KEGG: bsu:BSU27920 GTPase ObgE YP_003192667.1 KEGG: bha:BH3839 two-component sensor histidine kinase YP_003192668.1 involved in the peptidyltransferase reaction during translation YP_003192669.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: bha:BH3011 50S ribosomal protein L21 YP_003192670.1 PFAM: CBS domain-containing protein; SMART: CBS domain-containing protein; KEGG: bsu:BSU09230 hypothetical protein YP_003192672.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: ank:AnaeK_4117 phosphoesterase PA-phosphatase related YP_003192673.1 KEGG: gme:Gmet_2213 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase YP_003192674.1 PFAM: GAF domain protein; PAS fold domain protein; KEGG: geo:Geob_0262 GAF modulated sigma54 specific transcriptional regulator, Fis family YP_003192676.1 KEGG: dal:Dalk_2376 hypothetical protein YP_003192678.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: bar:GBAA2475 DEAD-box ATP dependent DNA helicase YP_003192679.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: glo:Glov_2961 methyl-accepting chemotaxis sensory transducer YP_003192680.1 KEGG: gme:Gmet_3192 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: deoxyribonuclease/rho motif-related TRAM; SMART: RNA binding S1 domain protein YP_003192681.1 KEGG: ppd:Ppro_0351 radical SAM domain-containing protein YP_003192682.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_1610 radical SAM domain protein YP_003192683.1 PFAM: peptidase M50; KEGG: gdj:Gdia_0458 peptidase M50 YP_003192684.1 PFAM: Peptidase M23; KEGG: sal:Sala_2738 peptidase M23B YP_003192685.1 KEGG: cja:CJA_0975 von Willebrand factor type A domain protein YP_003192686.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: gme:Gmet_0929 rod shape-determining protein RodA YP_003192687.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: sfu:Sfum_1282 cell division topological specificity factor MinE YP_003192688.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bha:BH3027 septum site-determining protein YP_003192689.1 PFAM: Septum formation inhibitor MinC; KEGG: bsu:BSU28000 septum formation inhibitor YP_003192690.1 KEGG: gme:Gmet_0928 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003192691.1 TIGRFAM: rod shape-determining protein MreD; KEGG: gur:Gura_2859 hypothetical protein YP_003192692.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_003192693.1 functions in MreBCD complex in some organisms YP_003192694.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: bar:GBAA4685 DNA repair protein RadC YP_003192695.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bar:GBAA4686 Maf-like protein YP_003192697.1 PFAM: Endoribonuclease L-PSP; KEGG: nar:Saro_3105 endoribonuclease L-PSP YP_003192698.1 PFAM: sodium/calcium exchanger membrane region; KEGG: afr:AFE_0587 sodium/calcium exchanger YP_003192699.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sfu:Sfum_1671 FolC bifunctional protein YP_003192701.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_003192703.1 KEGG: bar:GBAA5036 ABC transporter substrate- binding protein YP_003192704.1 PFAM: protein of unknown function DUF820; KEGG: gur:Gura_3383 hypothetical protein YP_003192705.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: gme:Gmet_0465 GTPase EngB YP_003192706.1 KEGG: bha:BH3050 ATP-dependent proteinase La 1 (lon) (class III heat-shock protein); TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; AAA ATPase YP_003192707.1 KEGG: bha:BH3051 ATP-dependent proteinase La; TIGRFAM: ATP-dependent protease LonB; PFAM: AAA ATPase central domain protein; peptidase S16 lon domain protein; magnesium chelatase ChlI subunit; SMART: AAA ATPase YP_003192708.1 binds and unfolds substrates as part of the ClpXP protease YP_003192709.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_003192710.1 PFAM: cell wall hydrolase SleB; Peptidoglycan- binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bha:BH2879 spore cortex-lytic enzyme YP_003192711.1 KEGG: bha:BH1139 hypothetical protein YP_003192712.1 KEGG: smd:Smed_5277 adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase YP_003192713.1 KEGG: bsu:BSU13460 hypothetical protein YP_003192714.1 Heat shock-induced YP_003192715.1 distantly related to WD-40 repeats; KEGG: mxa:MXAN_7023 putative lipoprotein YP_003192716.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: cko:CKO_01410 O-6-alkylguanine-DNA:cysteine- protein methyltransferase YP_003192717.1 TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: gur:Gura_3859 cysteine synthase A YP_003192718.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bha:BH1936 spore germination protein KB YP_003192719.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: bha:BH3863 methyl-accepting chemotaxis protein YP_003192720.1 PFAM: protein of unknown function DUF1540 YP_003192721.1 KEGG: dat:HRM2_46190 hypothetical protein YP_003192723.1 KEGG: hypothetical protein LOC689411 YP_003192724.1 PFAM: O-antigen polymerase; KEGG: dps:DPPB82 related to polysaccharide transport proteins YP_003192725.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_003192726.1 PFAM: chaperonin Cpn10; KEGG: bsu:BSU06020 co-chaperonin GroES YP_003192727.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: bar:GBAA3628 formate dehydrogenase accessory protein YP_003192728.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: nam:NAMH_0393 C4-dicarboxylate transporter YP_003192729.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: sfu:Sfum_0615 molybdenum cofactor synthesis domain YP_003192730.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_003192731.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_1159 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003192734.1 KEGG: cja:CJA_3647 putative DNA helicase YP_003192735.1 KEGG: dal:Dalk_2444 transcriptional regulator, AbrB family YP_003192737.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; KEGG: baa:BA_2006 hypothetical protein YP_003192738.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: swp:swp_4732 response regulator receiver:transcriptional regulatory protein YP_003192746.1 KEGG: bha:BH0956 hypothetical protein YP_003192747.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5645 carbohydrate ABC transporter YP_003192748.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter YP_003192749.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sme:SMc00562 putative transcription regulator protein YP_003192750.1 PFAM: small multidrug resistance protein; KEGG: sec:SC4217 quaternary ammonium compound- resistance protein SugE YP_003192751.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gbm:Gbem_2628 transcriptional regulator, MarR family YP_003192752.1 PFAM: Fe-S cluster domain protein; KEGG: dol:Dole_1915 Fe-S cluster domain-containing protein YP_003192753.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: bha:BH1006 methyl-accepting chemotaxis protein YP_003192754.1 KEGG: plu:plu4158 IS200 family transposase YP_003192757.1 KEGG: lpn:lpg2069 transposase Tn5 YP_003192760.1 KEGG: shn:Shewana3_3655 IS4 family transposase YP_003192764.1 KEGG: bar:GBAA2972 hypothetical protein YP_003192766.1 KEGG: hypothetical protein YP_003192767.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: acr:Acry_3575 IS605 family transposase OrfB YP_003192769.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: vsp:VS_II0086 putative antitoxin of toxin- antitoxin stability system YP_003192770.1 PFAM: PilT protein domain protein; KEGG: pnu:Pnuc_0693 PilT domain-containing protein YP_003192772.1 KEGG: gbm:Gbem_2865 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain-containing protein YP_003192774.1 PFAM: Accessory gene regulator B; SMART: Accessory gene regulator B YP_003192777.1 PFAM: Phosphoglycerate mutase; KEGG: gur:Gura_1007 phosphoglycerate mutase YP_003192778.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: gur:Gura_1006 metal dependent phosphohydrolase YP_003192779.1 PFAM: protein of unknown function DUF182; KEGG: gur:Gura_1005 hypothetical protein YP_003192780.1 KEGG: gur:Gura_1004 coenzyme F390 synthetase-like protein YP_003192781.1 PFAM: Radical SAM domain protein; KEGG: gur:Gura_1003 radical SAM domain-containing protein YP_003192782.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: ppd:Ppro_1547 hypothetical protein YP_003192783.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_1001 methyltransferase type 11 YP_003192784.1 KEGG: dat:HRM2_07060 hypothetical protein YP_003192785.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: gur:Gura_0999 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003192786.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: sfu:Sfum_1310 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_003192787.1 PFAM: molybdopterin binding domain; KEGG: gur:Gura_0997 molybdopterin binding domain- containing protein YP_003192788.1 PFAM: TOBE domain protein; KEGG: cco:CCC13826_1804 ModE family transcriptional regulator YP_003192790.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bsu:BSU33380 hypothetical protein YP_003192791.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_0230 molybdate porter YP_003192792.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0231 ABC-type transport system, ATPase component YP_003192793.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: dps:DP1350 molybdenum ABC transporter periplasmic substrate-binding protein YP_003192794.1 TIGRFAM: NifC-like ABC-type porter; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_01690 putative molybdenum ABC-type transporter, permease subunit YP_003192795.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00079 ABC-type sugar transport systems, ATPase component YP_003192796.1 KEGG: dol:Dole_0215 hypothetical protein YP_003192798.1 KEGG: bsu:BSU33380 hypothetical protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; spore coat assembly protein SafA; PFAM: extracellular solute-binding protein family 1; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM YP_003192799.1 KEGG: sfu:Sfum_1317 metal dependent phosphohydrolase YP_003192800.1 KEGG: sulfite reductase YP_003192801.1 KEGG: plu:plu4237 hypothetical protein YP_003192802.1 KEGG: eca:ECA3411 hypothetical protein YP_003192804.1 PFAM: protein of unknown function UPF0150; HicB family protein; KEGG: noc:Noc_2743 hypothetical protein YP_003192805.1 KEGG: pca:Pcar_0788 hypothetical protein YP_003192806.1 PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_2638 transposase, IS4 family protein YP_003192807.1 KEGG: shn:Shewana3_3655 IS4 family transposase YP_003192808.1 KEGG: bha:BH2521 transposase (21) YP_003192809.1 PFAM: copper amine oxidase domain protein; NHL repeat containing protein; KEGG: aca:ACP_1177 hypothetical protein YP_003192811.1 KEGG: bsu:BSU39230 cell wall-associated protein precursor (CWBP200, 105, 62) YP_003192812.1 PFAM: Penicillinase repressor; KEGG: pzu:PHZ_c0720 transcriptional regulator, BlaI family YP_003192813.1 PFAM: peptidase M56 BlaR1; KEGG: bar:GBAA1079 hypothetical protein YP_003192815.1 PFAM: cobalt transport protein; KEGG: bha:BH0166 hypothetical protein YP_003192816.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb4338 ABC-type cobalt transport system, ATPase component YP_003192817.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_4065 ABC transporter related YP_003192818.1 PFAM: protein of unknown function UPF0066; KEGG: sfu:Sfum_0270 protein of unknown function UPF0066 YP_003192820.1 PFAM: S-layer domain protein; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: bar:GBAA2315 S-layer protein, putative YP_003192821.1 PFAM: protein of unknown function DUF1533 YP_003192822.1 PFAM: metallophosphoesterase; KEGG: afw:Anae109_3838 metallophosphoesterase YP_003192823.1 KEGG: cjj:CJJ81176_0752 hypothetical protein YP_003192826.1 PFAM: Ig domain protein group 2 domain protein; S- layer domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: bar:GBAA2528 N-acetylmuramoyl-L-alanine amidase YP_003192827.1 KEGG: sbn:Sbal195_4447 hypothetical protein YP_003192828.1 KEGG: mfa:Mfla_0116 hypothetical protein YP_003192829.1 KEGG: mfa:Mfla_0117 MotA/TolQ/ExbB proton channel YP_003192830.1 PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: yen:YE2321 hypothetical protein YP_003192831.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003192834.1 PFAM: metallophosphoesterase; KEGG: afw:Anae109_3838 metallophosphoesterase YP_003192835.1 KEGG: gbm:Gbem_1922 regulator of chromosome condensation RCC1 YP_003192837.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003192839.1 PFAM: protein of unknown function UPF0066; KEGG: sat:SYN_01044 putative cytoplasmic protein YP_003192840.1 PFAM: S-layer domain protein; KEGG: baa:BA_1470 SLH, S-layer homology domain YP_003192841.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: sfu:Sfum_3074 molybdopterin-guanine dinucleotide biosynthesis MobB region YP_003192842.1 PFAM: molybdopterin binding domain; KEGG: ppd:Ppro_1552 molybdopterin binding domain- containing protein YP_003192843.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: bha:BH3021 molybdopterin biosynthesis YP_003192844.1 KEGG: gme:Gmet_0300 molybdopterin-guanine dinucleotide biosynthesis MobB region YP_003192845.1 Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: ppd:Ppro_3520 formate dehydrogenase, alpha subunit YP_003192846.1 PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; KEGG: pca:Pcar_0835 anaerobic dehydrogenase YP_003192847.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_0834 NADH dehydrogenase I, F subunit YP_003192848.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: pca:Pcar_0833 NADH:ubiquinone oxidoreductase 24 kD subunit YP_003192849.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: ppd:Ppro_3520 formate dehydrogenase, alpha subunit YP_003192850.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: dal:Dalk_4395 5-formyltetrahydrofolate cyclo- ligase YP_003192851.1 PFAM: amino acid-binding ACT domain protein; KEGG: glo:Glov_1859 amino acid-binding ACT domain protein YP_003192852.1 PFAM: Radical SAM domain protein; SMART: PDZ/DHR/GLGF domain protein; Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_2372 molybdenum cofactor biosynthesis protein A YP_003192853.1 KEGG: bha:BH0548 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease YP_003192854.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rec:RHECIAT_PC0000438 putative metal- dependent hydrolase protein YP_003192856.1 KEGG: sde:Sde_0279 hypothetical protein YP_003192857.1 PFAM: protein of unknown function DUF262; KEGG: sde:Sde_0278 hypothetical protein YP_003192859.1 PFAM: thioesterase superfamily protein; KEGG: bcj:BCAL1970 thioesterase superfamily protein YP_003192860.1 PFAM: PspA/IM30 family protein; KEGG: bar:GBAA5061 hypothetical protein YP_003192862.1 PFAM: SCP-like extracellular; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bha:BH2878 hypothetical protein YP_003192865.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3606 hypothetical protein YP_003192867.1 TIGRFAM: uracil phosphoribosyltransferase; KEGG: sme:SMc04121 uracil phosphoribosyltransferase YP_003192868.1 KEGG: lip:LI1028 phosphate-binding protein YP_003192869.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: dps:DP1664 assimilatory sulfite reductase YP_003192870.1 PFAM: ferric-uptake regulator; KEGG: sat:SYN_02524 ferric uptake regulator family protein YP_003192871.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: mgm:Mmc1_3282 rubrerythrin YP_003192872.1 KEGG: dal:Dalk_2355 rubrerythrin YP_003192874.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: aba:Acid345_0180 cytochrome c biogenesis protein, transmembrane YP_003192875.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: baa:BA_2018 AhpC-TSA, AhpC/TSA family YP_003192882.1 PFAM: protein of unknown function DUF21; CBS domain-containing protein; transporter-associated region; KEGG: cla:Cla_0455 conserved hypothetical protein, putative efflux protein (DUF21 domain protein) YP_003192883.1 KEGG: bsu:BSU13650 small membrane protein YP_003192884.1 PFAM: protein of unknown function UPF0060; KEGG: bsu:BSU08120 hypothetical protein YP_003192885.1 PFAM: protein of unknown function DUF111; KEGG: sat:SYN_00476 hypothetical protein YP_003192886.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: gsu:GSU3461 thioesterase family protein YP_003192887.1 KEGG: bha:BH2521 transposase (21) YP_003192889.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003192890.1 PFAM: transposase IS200-family protein; KEGG: acr:Acry_3301 transposase IS200-family protein YP_003192894.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: sfu:Sfum_1698 DEAD/DEAH box helicase domain protein YP_003192895.1 PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bsu:BSU09370 gamma-D-glutamate-meso- diaminopimelate muropeptidase (major autolysin) (CWBP49') YP_003192896.1 KEGG: bsu:BSU28380 germination (cortex hydrolysis) and sporulation (stage II, multiple polar septa) YP_003192898.1 PFAM: peptidase M48 Ste24p; KEGG: gbm:Gbem_1935 peptidase M48 Ste24p YP_003192899.1 KEGG: bha:BH1149 hypothetical protein YP_003192900.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: glo:Glov_0420 ADP-ribosyl-(dinitrogen reductase) hydrolase YP_003192901.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: baa:BA_0473 arginase family YP_003192902.1 TIGRFAM: spermidine synthase; PFAM: Spermine synthase; KEGG: baa:BA_0474 spermine/spermidine synthase YP_003192903.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex YP_003192904.1 KEGG: sus:Acid_5774 hypothetical protein YP_003192905.1 PFAM: extracellular solute-binding protein family 5; KEGG: bha:BH3644 dipeptide ABC transporter (dipeptide-binding protein) YP_003192906.1 KEGG: hypothetical protein YP_003192908.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: tbd:Tbd_1645 heterodisulfide reductase, B subunit YP_003192909.1 KEGG: sfu:Sfum_0820 putative heterodisulfide reductase, C subunit YP_003192910.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfu:Sfum_1050 methyl-viologen-reducing hydrogenase, delta subunit YP_003192911.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_1287 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_003192912.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite YP_003192913.1 TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_1047 adenylylsulfate reductase, beta subunit YP_003192914.1 KEGG: sulfate adenylyltransferase ; K00958 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase YP_003192915.1 KEGG: baa:BA_1443 hypothetical protein YP_003192916.1 KEGG: glo:Glov_3082 nicotinate- nucleotide/dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazolep hosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_003192917.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003192919.1 PFAM: protein of unknown function DUF39; KEGG: sat:SYN_01778 putative cytoplasmic protein YP_003192920.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0168 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_003192921.1 PFAM: ApbE family lipoprotein; KEGG: dal:Dalk_4001 ApbE family lipoprotein YP_003192928.1 KEGG: mxa:MXAN_3747 hypothetical protein YP_003192929.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: bsu:BSU11340 3-oxoacyl-(acyl carrier protein) synthase II YP_003192931.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_003192932.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003192935.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: bpy:Bphyt_5562 transport-associated YP_003192936.1 PFAM: glycoside hydrolase 15-related; KEGG: bmn:BMA10247_0311 glycosy hydrolase family protein YP_003192938.1 PFAM: protein of unknown function DUF503; KEGG: pca:Pcar_1556 hypothetical protein YP_003192940.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: ppd:Ppro_2887 C_GCAxxG_C_C family protein YP_003192942.1 KEGG: geo:Geob_0179 hypothetical protein YP_003192943.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: scl:sce6513 ATPase-like protein YP_003192944.1 PFAM: Coat F domain protein; KEGG: baa:BA_0107 hypothetical protein YP_003192946.1 TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: afw:Anae109_0218 GTP-binding protein HSR1- related YP_003192947.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_003192948.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: Nit2; nitrilase family, member 2 YP_003192949.1 Contains selenocysteine; PFAM: nitrogen-fixing NifU domain protein; KEGG: ppd:Ppro_0333 NifU domain-containing protein YP_003192950.1 KEGG: HYR10; hyphally-regulated cell wall protein YP_003192951.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sdn:Sden_2772 RNA polymerase sigma factor AlgU YP_003192952.1 PFAM: type IV pilus assembly PilZ YP_003192953.1 KEGG: wsu:WS1290 putative undecaprenol kinase bacitracin resistance protein; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_003192955.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: glo:Glov_2498 phosphodiesterase, MJ0936 family YP_003192956.1 hydrolyzes non-standard nucleotides such as xanthine and inosine YP_003192957.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_003192958.1 PFAM: beta-lactamase domain protein; KEGG: bha:BH3002 hypothetical protein YP_003192959.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gur:Gura_0484 putative CoA-substrate-specific enzyme activase YP_003192960.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: gur:Gura_0485 2-hydroxyglutaryl-CoA dehydratase, D-component YP_003192961.1 KEGG: bsu:BSU27580 hypothetical protein; PFAM: cell wall hydrolase/autolysin; SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: cell wall hydrolase/autolysin; SH3 domain protein YP_003192962.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: sus:Acid_7877 ErfK/YbiS/YcfS/YnhG family protein YP_003192963.1 PFAM: amino acid permease-associated region; KEGG: cak:Caul_2950 amino acid permease-associated region YP_003192964.1 KEGG: cak:Caul_2949 hypothetical protein YP_003192965.1 KEGG: ank:AnaeK_1566 dehydrogenase-like protein YP_003192966.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: aca:ACP_2697 putative 6-pyruvoyl tetrahydropterin synthase YP_003192967.1 PFAM: Radical SAM domain protein; KEGG: mca:MCA1232 radical activating enzyme family protein YP_003192968.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: gme:Gmet_3075 ExsB YP_003192970.1 PFAM: MgtC/SapB transporter; KEGG: gur:Gura_2811 MgtC/SapB transporter YP_003192971.1 PFAM: peptidase M29 aminopeptidase II; KEGG: bha:BH3246 aminopeptidase YP_003192976.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: ppd:Ppro_1203 hypothetical protein YP_003192977.1 KEGG: Viral A-type inclusion protein repeat containing protein YP_003192978.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: bha:BH0342 hypothetical protein YP_003192979.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: bha:BH0341 hypothetical protein YP_003192980.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: sat:SYN_02474 exonuclease N YP_003192981.1 TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801; KEGG: bha:BH0339 hypothetical protein YP_003192982.1 TIGRFAM: CRISPR-associated protein, Csd1 family; KEGG: geo:Geob_3414 CRISPR-associated protein, Csd1 family YP_003192983.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: mgm:Mmc1_3520 CRISPR-associated protein Cas5 family YP_003192984.1 KEGG: eba:ebA3291 putative CRISPR-associated helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR- associated HD domain protein; PFAM: helicase domain protein; SMART: DEAD-like helicase YP_003192985.1 KEGG: rsq:Rsph17025_4034 hypothetical protein YP_003192986.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bmn:BMA10247_1187 phosphinothricin acetyltransferase YP_003192990.1 KEGG: sbl:Sbal_2316 Cro/CI family transcriptional regulator YP_003192991.1 PFAM: YcfA family protein; KEGG: rpb:RPB_4319 YcfA-like YP_003192992.1 PFAM: protein of unknown function UPF0150; KEGG: aeh:Mlg_2272 hypothetical protein YP_003192994.1 PFAM: integrase family protein; KEGG: baa:BA_1005 Phage_integrase, phage integrase family YP_003192996.1 SMART: helix-turn-helix domain protein; KEGG: xac:XAC1493 transcriptional regulator YP_003192997.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory YP_003192998.1 PFAM: major capsid protein HK97; KEGG: bph:Bphy_7144 HK97 family phage major capsid protein YP_003192999.1 KEGG: baa:BA_1053 ERM, ezrin/radixin/moesin family YP_003193002.1 PFAM: CopG domain protein DNA-binding domain protein YP_003193004.1 PFAM: protein of unknown function DUF955 YP_003193005.1 KEGG: bsu:BSU04810 hypothetical protein YP_003193010.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: nar:Saro_3924 DNA binding domain-containing protein YP_003193012.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rpc:RPC_3072 XRE family transcriptional regulator YP_003193013.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ara:Arad_0428 transcriptional regulator protein YP_003193014.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: hypothetical protein YP_003193017.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: hit:NTHI0420 hypothetical protein YP_003193018.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: wpi:WPa_0274 putative transcriptional regulator YP_003193020.1 PFAM: PilT protein domain protein; KEGG: cbg:CbuG_0773 PIN domain protein YP_003193022.1 PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein YP_003193023.1 KEGG: bja:bll4526 site-specific integrase YP_003193024.1 PFAM: integrase family protein; KEGG: bpt:Bpet1450 integrase/recombinase YP_003193025.1 PFAM: integrase family protein; KEGG: dat:HRM2_26350 predicted phage-specific integrase YP_003193026.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bpt:Bpet1305 putative integrase/recombinase YP_003193027.1 KEGG: bha:BH2521 transposase (21) YP_003193028.1 KEGG: eba:ebA6030 hypothetical protein YP_003193029.1 TIGRFAM: DNA binding domain protein, excisionase family YP_003193030.1 KEGG: xca:xccb100_2817 hypothetical protein YP_003193032.1 TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: mms:mma_2696 hypothetical protein YP_003193036.1 KEGG: dal:Dalk_2800 phage protein YP_003193039.1 KEGG: dymA; dynamin like protein ; K01528 dynamin GTPase YP_003193040.1 KEGG: glo:Glov_1125 hypothetical protein YP_003193041.1 KEGG: hha:Hhal_0784 transposase, IS4 family protein YP_003193042.1 KEGG: glo:Glov_1125 hypothetical protein YP_003193045.1 KEGG: sbp:Sbal223_4458 putative transcriptional regulator, XRE family YP_003193050.1 KEGG: bha:BH2521 transposase (21) YP_003193054.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bha:BH0364 transcriptional regulator YP_003193055.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bra:BRADO1389 hypothetical protein YP_003193058.1 KEGG: net:Neut_1485 SppA protein YP_003193061.1 PFAM: integrase family protein; KEGG: baa:BA_1005 Phage_integrase, phage integrase family YP_003193062.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: ppd:Ppro_1299 cobalamin (vitamin B12) biosynthesis CbiX protein YP_003193063.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sfu:Sfum_3313 transcriptional regulator, LysR family YP_003193064.1 KEGG: ppd:Ppro_1223 cobalt ABC transporter, ATPase subunit; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003193065.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: ppd:Ppro_1224 cobalt ABC transporter, inner membrane subunit CbiQ YP_003193066.1 PFAM: Cobalt transport protein CbiN; KEGG: dar:Daro_1696 cobalt transport protein CbiN YP_003193067.1 TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: glo:Glov_3660 cobalamin biosynthesis protein CbiM YP_003193068.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: baa:BA_0830 acetyltransferase (GNAT) family YP_003193069.1 PFAM: peptidase M22 glycoprotease; KEGG: baa:BA_0829 Peptidase_M22, glycoprotease family YP_003193070.1 PFAM: protein of unknown function UPF0079; KEGG: gsu:GSU1800 hypothetical protein YP_003193071.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bsu:BSU37130 two-component response regulator YP_003193072.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bha:BH3008 hypothetical protein YP_003193073.1 PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: afw:Anae109_0076 peptidase C26 YP_003193074.1 PFAM: PemK family protein; KEGG: bha:BH0522 hypothetical protein YP_003193075.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: bha:BH0521 hypothetical protein YP_003193076.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_003193077.1 KEGG: sun:SUN_1515 hypothetical protein YP_003193078.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sus:Acid_0085 ABC transporter related YP_003193079.1 KEGG: sfu:Sfum_3987 peptidase S24, S26A and S26B YP_003193080.1 KEGG: sfu:Sfum_3985 hypothetical protein YP_003193081.1 KEGG: sfu:Sfum_2373 HPr kinase YP_003193083.1 PFAM: protein of unknown function DUF291; KEGG: ade:Adeh_3063 VCBS YP_003193084.1 KEGG: geo:Geob_1283 outer membrane adhesin like proteiin YP_003193085.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bha:BH2123 two-component response regulator YP_003193086.1 KEGG: bha:BH0784 two-component sensor histidine kinase YP_003193087.1 TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afw:Anae109_0855 glutamate synthase, NADH/NADPH, small subunit YP_003193088.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: bha:BH1728 glutamate synthase (large subunit) YP_003193089.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bar:GBAA3833 glutamine synthetase, type I YP_003193090.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bsu:BSU17460 glutamine synthetase YP_003193091.1 PFAM: ANTAR domain protein; response regulator receiver; SMART: response regulator receiver; KEGG: gur:Gura_1146 response regulator receiver/ANTAR domain-containing protein YP_003193092.1 KEGG: pca:Pcar_2628 glutamate synthase-related protein YP_003193093.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bha:BH2360 glutamine synthetase (glutamate-- ammonia ligase) YP_003193094.1 PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: gme:Gmet_0660 response regulator receiver/ANTAR domain-containing protein YP_003193095.1 PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: bsu:BSU16320 flagellar motor switch protein YP_003193096.1 PFAM: small acid-soluble spore protein alpha/beta type; KEGG: bha:BH1138 small acid-soluble spore protein (major alpha-type SASP) YP_003193097.1 Catalyzes the conversion of citrate to isocitrate YP_003193098.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: ppd:Ppro_0982 prepilin peptidase YP_003193099.1 TIGRFAM: CRISPR-associated HD domain protein YP_003193100.1 KEGG: dol:Dole_0057 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_003193101.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF- family domain protein; KEGG: ppd:Ppro_2259 carbohydrate kinase, YjeF related protein YP_003193102.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: geo:Geob_2943 holo-acyl-carrier-protein synthase YP_003193103.1 PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: gur:Gura_2791 LytTR family two component transcriptional regulator YP_003193104.1 KEGG: gme:Gmet_2698 histidine kinase internal region; PFAM: histidine kinase internal region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003193106.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bar:GBAA5406 LysR family transcriptional regulator YP_003193108.1 PFAM: protein of unknown function UPF0153; KEGG: dol:Dole_2665 hypothetical protein YP_003193110.1 KEGG: rpc:RPC_4498 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_003193111.1 in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex YP_003193112.1 KEGG: sat:SYN_00227 putative cytoplasmic protein YP_003193113.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: mgm:Mmc1_3271 PAS/PAC sensor hybrid histidine kinase YP_003193114.1 PFAM: CheB methylesterase; KEGG: pin:Ping_3721 CheB-type protein glutamate methylesterase YP_003193115.1 KEGG: vvy:VVA0934 methylase of chemotaxis methyl- accepting protein; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003193116.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; KEGG: vvu:VV2_0376 signal transduction histidine kinase YP_003193117.1 KEGG: noc:Noc_0847 two component diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; response regulator receiver; SMART: GGDEF domain-containing protein; response regulator receiver YP_003193119.1 PFAM: major facilitator superfamily MFS_1; KEGG: bar:GBAA2346 major facilitator family transporter YP_003193120.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sat:SYN_02788 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase YP_003193121.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003193122.1 PFAM: HPP family protein; KEGG: baa:BA_1528 hypothetical protein YP_003193124.1 KEGG: baa:BA_0962 hypothetical protein YP_003193125.1 PFAM: ABC-2 type transporter; KEGG: azo:azo0351 ABC transporter permease NodJ YP_003193126.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00774 ABC transporter ATP-binding protein YP_003193127.1 KEGG: gur:Gura_0021 hypothetical protein YP_003193128.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: nis:NIS_0600 hypothetical protein YP_003193129.1 PFAM: protein of unknown function UPF0027; KEGG: bar:GBAA2999 hypothetical protein YP_003193130.1 PFAM: transglutaminase domain protein; KEGG: acb:A1S_3464 Cro-like protein YP_003193131.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003193132.1 PFAM: transposase IS200-family protein; KEGG: acr:Acry_3301 transposase IS200-family protein YP_003193134.1 KEGG: rsq:Rsph17025_3830 hypothetical protein YP_003193137.1 KEGG: aba:Acid345_3476 HNH endonuclease YP_003193138.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dol:Dole_1953 DEAD/DEAH box helicase domain- containing protein YP_003193139.1 KEGG: conserved hypothetical protein YP_003193141.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003193143.1 PFAM: UspA domain protein; KEGG: bbr:BB2875 universal stress family protein YP_003193144.1 TIGRFAM: delta-lactam-biosynthetic de-N-acetylase; PFAM: polysaccharide deacetylase; KEGG: bha:BH0895 polysaccharide deacetylase (nodulation protein NodB) YP_003193145.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2125 ABC transporter related YP_003193146.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP1270 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein YP_003193147.1 PFAM: inner-membrane translocator; KEGG: geo:Geob_2801 inner-membrane translocator YP_003193148.1 PFAM: inner-membrane translocator; KEGG: rpa:RPA4020 branched chain amino acid ABC transporter permease YP_003193149.1 PFAM: Extracellular ligand-binding receptor; KEGG: gur:Gura_2131 extracellular ligand-binding receptor YP_003193150.1 PFAM: Extracellular ligand-binding receptor; KEGG: dol:Dole_0833 extracellular ligand-binding receptor YP_003193151.1 KEGG: baa:BA_0195 dienelactone hydrolase family YP_003193152.1 PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE3326 hypothetical protein YP_003193153.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: bbt:BBta_5738 acylglycerophosphoethanolamine acyltransferase YP_003193154.1 PFAM: regulatory protein TetR; KEGG: mag:amb2971 transcriptional regulator YP_003193155.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_003193156.1 TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0844 hydrogenases, Fe-only YP_003193157.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_16600 NuoF YP_003193158.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: pca:Pcar_1846 NADP-reducing hydrogenase chain A YP_003193160.1 KEGG: glo:Glov_1995 hypothetical protein YP_003193161.1 KEGG: ppd:Ppro_3150 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain-containing protein YP_003193162.1 KEGG: mucin-associated surface protein (MASP) YP_003193164.1 PFAM: FeoA family protein; KEGG: baa:BA_1302 ferrous iron transport protein A YP_003193165.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: baa:BA_1301 ferrous iron transport protein B YP_003193166.1 PFAM: Ferrous iron transport B domain protein; nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; KEGG: baa:BA_1300 ferrous iron transport protein B YP_003193168.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rms:RMA_0991 3-demethylubiquinone-9 3- methyltransferase YP_003193170.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003193171.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: azo:azo2486 putative phosphoenolpyruvate synthase YP_003193172.1 PFAM: regulatory protein TetR; KEGG: azo:azo2487 TetR family transcriptional regulator YP_003193173.1 PFAM: helix-turn-helix- domain-containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain-containing protein AraC type; KEGG: bha:BH3679 two-component response regulator YP_003193174.1 PFAM: UspA domain protein; KEGG: hypothetical protein YP_003193177.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: noc:Noc_0388 IS891/IS1136/IS1341 transposase YP_003193178.1 PFAM: transposase IS200-family protein; KEGG: acr:Acry_3301 transposase IS200-family protein YP_003193180.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: pla:Plav_3503 3-demethylubiquinone-9 3- methyltransferase YP_003193181.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bar:GBAA1032 RNA polymerase factor sigma C YP_003193182.1 KEGG: conserved hypothetical protein YP_003193183.1 KEGG: dal:Dalk_3879 transposase-like protein YP_003193184.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_003193186.1 KEGG: bph:Bphy_2356 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain-containing protein; SMART: GGDEF domain-containing protein YP_003193188.1 KEGG: psa:PST_1365 hypothetical protein YP_003193191.1 KEGG: psb:Psyr_4947 hypothetical protein YP_003193192.1 PFAM: YcfA family protein; KEGG: cco:CCC13826_0618 hypothetical protein YP_003193193.1 PFAM: protein of unknown function UPF0150; HicB family protein; KEGG: pca:Pcar_0789 hypothetical protein YP_003193194.1 KEGG: mno:Mnod_8381 hypothetical protein YP_003193195.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: eba:ebA2392 putative transcriptional regulator YP_003193199.1 KEGG: rsq:Rsph17025_3830 hypothetical protein YP_003193200.1 PFAM: KilA domain protein; KEGG: gur:Gura_3302 hypothetical protein YP_003193204.1 PFAM: KilA domain protein; KEGG: geo:Geob_0035 KilA domain protein YP_003193205.1 PFAM: Recombinase; KEGG: mes:Meso_2219 recombinase YP_003193208.1 KEGG: bha:BH0956 hypothetical protein YP_003193209.1 PFAM: sigma-70 region 4 domain protein; Bacterio- opsin activator HTH domain protein; KEGG: bha:BH0955 hypothetical protein YP_003193210.1 KEGG: smt:Smal_0900 hypothetical protein YP_003193212.1 KEGG: hypothetical protein YP_003193213.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bav:BAV2945 transcriptional regulator YP_003193214.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bar:GBAA1980 hypothetical protein YP_003193215.1 TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX; KEGG: dvl:Dvul_0990 FAD-dependent thymidylate synthase YP_003193216.1 PFAM: cell wall hydrolase SleB; KEGG: bar:GBAA2748 spore cortex-lytic enzyme prepeptide YP_003193217.1 PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_2638 transposase, IS4 family protein YP_003193219.1 KEGG: mgm:Mmc1_3419 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_003193220.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_003193224.1 TIGRFAM: phage uncharacterized protein; KEGG: hsm:HSM_0666 phage uncharacterized protein YP_003193225.1 KEGG: glo:Glov_2990 hypothetical protein YP_003193226.1 KEGG: cjd:JJD26997_1909 prophage ps3 protein 01 YP_003193227.1 PFAM: AIG2 family protein; KEGG: pub:SAR11_1133 hypothetical protein YP_003193229.1 KEGG: sat:SYN_01895 putative cytoplasmic protein YP_003193230.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ypg:YpAngola_0071 ABC transporter, ATP- binding protein YP_003193232.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ppw:PputW619_4151 tyrosine recombinase XerD YP_003193233.1 KEGG: azo:azo0309 TetR family transcriptional regulator YP_003193234.1 KEGG: psb:Psyr_1929 hypothetical protein YP_003193235.1 KEGG: bha:BH2520 transposase related protein (20) YP_003193236.1 KEGG: activating signal cointegrator-related YP_003193237.1 KEGG: cjj:CJJ81176_1512 hypothetical protein YP_003193238.1 KEGG: seh:SeHA_C2919 putative ATPase YP_003193239.1 KEGG: conserved hypothetical protein YP_003193240.1 PFAM: integrase family protein; KEGG: spl:Spea_0380 tyrosine recombinase XerC YP_003193241.1 KEGG: vei:Veis_2854 hypothetical protein YP_003193242.1 KEGG: sfu:Sfum_2747 hypothetical protein YP_003193244.1 KEGG: bha:BH2521 transposase (21) YP_003193245.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: bsu:BSU33600 SsrA-binding protein YP_003193246.1 PFAM: thioesterase superfamily protein; KEGG: gsu:GSU0993 hypothetical protein YP_003193247.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_003193248.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: bsu:BSU33630 preprotein translocase subunit SecG YP_003193249.1 KEGG: gsu:GSU2286 enolase; TIGRFAM: enolase; PFAM: enolase YP_003193250.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_003193251.1 TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: bsu:BSU33920 triosephosphate isomerase YP_003193252.1 PFAM: phosphoglycerate kinase; KEGG: bsu:BSU33930 phosphoglycerate kinase YP_003193253.1 KEGG: bha:BH3560 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003193254.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: gsu:GSU1887 RNA polymerase sigma-54 factor YP_003193255.1 PFAM: protein of unknown function DUF199; KEGG: bha:BH3567 hypothetical protein YP_003193256.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: bsu:BSU34760 hypothetical protein YP_003193257.1 PFAM: conserved hypothetical protein; KEGG: baa:BA_0242 hypothetical protein YP_003193258.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: slo:Shew_1420 putative hydrolase YP_003193259.1 PFAM: sugar isomerase (SIS) YP_003193260.1 TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: scl:sce2296 4-alpha-glucanotransferase YP_003193261.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase; KEGG: baa:BA_0503 haloacid dehalogenase-like hydrolase YP_003193262.1 PFAM: hexokinase; KEGG: Os01g0742500; hypothetical protein ; K00844 hexokinase YP_003193264.1 PFAM: UvrD/REP helicase; KEGG: nwi:Nwi_2360 UvrD/REP helicase YP_003193266.1 PFAM: phosphoglucose isomerase (PGI); KEGG: bha:BH3343 glucose-6-phosphate isomerase YP_003193267.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: glo:Glov_0126 flavin reductase domain protein FMN-binding YP_003193268.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_003193269.1 KEGG: gsu:GSU1656 sensory box/response regulator; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain-containing protein; metal- dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; SMART: GGDEF domain-containing protein YP_003193270.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_00628 ferredoxin YP_003193271.1 SMART: AAA ATPase; KEGG: msu:MS1390 hypothetical protein YP_003193272.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bha:BH3594 excinuclease ABC subunit A YP_003193273.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_003193274.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_0064 periplasmic binding protein/LacI transcriptional regulator YP_003193276.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rpi:Rpic_1242 phage SPO1 DNA polymerase- related protein YP_003193277.1 KEGG: dal:Dalk_3711 hypothetical protein YP_003193278.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: bha:BH3598 hypothetical protein YP_003193279.1 KEGG: psp:PSPPH_4918 carboxyl-terminal protease family protein; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003193280.1 PFAM: Peptidase M23; KEGG: bha:BH3600 cell wall-binding protein YP_003193281.1 PFAM: protein of unknown function DUF214; KEGG: bha:BH3601 cell-division protein YP_003193282.1 KEGG: bsu:BSU35260 cell-division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_003193283.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: pca:Pcar_2719 transketolase, C-terminal subunit YP_003193284.1 PFAM: Transketolase domain protein; KEGG: gme:Gmet_0551 transketolase subunit A YP_003193285.1 PFAM: protein of unknown function DUF161; KEGG: bha:BH3604 hypothetical protein YP_003193287.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_003193288.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: baa:BA_0277 ribosomal_S30, Sigma 54 modulation protein / S30EA ribosomal protein YP_003193289.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bha:BH3610 cold-shock protein YP_003193290.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: afr:AFE_0569 ErfK/YbiS/YcfS/YnhG family YP_003193291.1 PFAM: VanW family protein; KEGG: bsu:BSU18720 hypothetical protein YP_003193292.1 PFAM: Orn/Lys/Arg decarboxylase major region; Soluble liver antigen/liver pancreas antigen; Orn/Lys/Arg decarboxylase domain protein; KEGG: bsu:BSU14630 arginine decarboxylase YP_003193293.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: baa:BA_0993 integral membrane protein DUF6 YP_003193294.1 KEGG: pca:Pcar_2573 amidophosphoribosyltransferase YP_003193295.1 KEGG: glo:Glov_1844 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; GAF domain protein; SMART: GGDEF domain-containing protein; GAF domain protein YP_003193297.1 KEGG: bar:GBAA5017 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_003193298.1 PFAM: S-layer domain protein; KEGG: hypothetical protein YP_003193301.1 PFAM: S-layer domain protein; KEGG: baa:BA_1469 SLH, S-layer homology domain YP_003193302.1 PFAM: S-layer domain protein; Fibronectin type III domain protein; KEGG: hypothetical protein YP_003193304.1 PFAM: VanZ family protein; KEGG: bha:BH3707 acetobutylicum phosphotransbutyrylase YP_003193305.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; KEGG: dat:HRM2_29750 CapD1 YP_003193308.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: bbr:BB0907 hypothetical protein YP_003193309.1 PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: bha:BH3718 capsular polysaccharide biosynthesis YP_003193310.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: bar:GBAA3833 glutamine synthetase, type I YP_003193311.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: sfu:Sfum_3265 Glu/Leu/Phe/Val dehydrogenase, C terminal YP_003193313.1 PFAM: DNA polymerase beta domain protein region; KEGG: pin:Ping_0760 DNA polymerase beta subunit YP_003193315.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bja:bsr0038 transcriptional regulator YP_003193316.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sfu:Sfum_1154 transcriptional regulator, XRE family YP_003193319.1 PFAM: LexA DNA-binding domain protein; KEGG: ppd:Ppro_1572 SOS-response transcriptional repressor, LexA YP_003193320.1 PFAM: protein of unknown function DUF1659 YP_003193324.1 KEGG: noc:Noc_1504 putative transposase YP_003193327.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: ara:Arad_9023 reverse transcriptase/maturase protein YP_003193331.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: geo:Geob_2518 transcriptional regulator, XRE family YP_003193332.1 PFAM: protein of unknown function DUF891; KEGG: lpc:LPC_0086 hypothetical protein YP_003193333.1 PFAM: DNA polymerase beta domain protein region; KEGG: sat:SYN_01114 nucleotidyltransferase YP_003193335.1 KEGG: noc:Noc_1504 putative transposase YP_003193336.1 TIGRFAM: Mg chelatase, subunit ChlI; DNA protecting protein DprA; PFAM: magnesium chelatase ChlI subunit; SMF family protein; ATPase associated with various cellular activities AAA_5; KEGG: gur:Gura_4031 Mg chelatase, subunit ChlI YP_003193339.1 PFAM: HEPN domain protein; KEGG: gur:Gura_1199 HEPN domain-containing protein YP_003193341.1 PFAM: DNA polymerase beta domain protein region; KEGG: gur:Gura_1277 DNA polymerase beta subunit YP_003193342.1 KEGG: dal:Dalk_3879 transposase-like protein YP_003193344.1 KEGG: dal:Dalk_2874 hypothetical protein YP_003193345.1 PFAM: PilT protein domain protein; KEGG: bra:BRADO7084 putative plasmid stability protein YP_003193348.1 KEGG: scl:sce5012 hypothetical protein YP_003193349.1 PFAM: protein of unknown function UPF0175 YP_003193351.1 KEGG: wol:WD0807 hypothetical protein YP_003193356.1 PFAM: plasmid stabilization system; KEGG: pna:Pnap_4619 hypothetical protein YP_003193357.1 PFAM: DNA polymerase beta domain protein region; KEGG: sat:SYN_01114 nucleotidyltransferase YP_003193358.1 PFAM: HEPN domain protein; SMART: HEPN domain protein; KEGG: geo:Geob_1133 HEPN domain protein YP_003193359.1 KEGG: noc:Noc_1504 putative transposase YP_003193360.1 KEGG: hip:CGSHiEE_04170 hypothetical protein YP_003193361.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: bsu:BSU38860 UDP-glucose 4-epimerase YP_003193362.1 PFAM: PilT protein domain protein; KEGG: bra:BRADO7084 putative plasmid stability protein YP_003193365.1 PFAM: HEPN domain protein; SMART: HEPN domain protein; KEGG: hypothetical protein YP_003193366.1 PFAM: DNA polymerase beta domain protein region; KEGG: sat:SYN_01114 nucleotidyltransferase YP_003193370.1 KEGG: gur:Gura_3880 hypothetical protein YP_003193371.1 KEGG: noc:Noc_1504 putative transposase YP_003193372.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gme:Gmet_0890 smf protein YP_003193373.1 KEGG: gur:Gura_4031 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003193376.1 KEGG: bsu:BSU36230 hypothetical protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase YP_003193377.1 PFAM: copper amine oxidase domain protein; KEGG: scl:sce1953 hypothetical protein YP_003193378.1 PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: bha:BH3718 capsular polysaccharide biosynthesis YP_003193380.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: bsu:BSU38860 UDP-glucose 4-epimerase YP_003193381.1 KEGG: bsu:BSU36230 hypothetical protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase YP_003193382.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: bha:BH3372 hypothetical protein YP_003193383.1 KEGG: bsu:BSU10910 hypothetical protein; TIGRFAM: adenylylsulfate kinase; PFAM: adenylylsulfate kinase YP_003193385.1 KEGG: rpd:RPD_3934 transposase, IS204/IS1001/IS1096/IS1165 YP_003193386.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: mlo:mll5961 transposase YP_003193387.1 PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: dol:Dole_1836 polysaccharide biosynthesis protein YP_003193390.1 KEGG: sbl:Sbal_2880 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ YP_003193391.1 PFAM: sulfotransferase; KEGG: smd:Smed_4571 putative enzyme YP_003193392.1 PFAM: glycosyl transferase group 1; KEGG: hha:Hhal_0770 glycosyl transferase, group 1 YP_003193393.1 KEGG: pub:SAR11_0548 unknown membrane protein YP_003193394.1 PFAM: sulfotransferase; KEGG: dat:HRM2_25330 putative 3-beta-hydroxysteroid sulfotransferase (phenol sulfotransferase) YP_003193395.1 PFAM: glycosyl transferase group 1; KEGG: ftn:FTN_1427 glycosyl transferase, group 1 YP_003193396.1 PFAM: sugar transferase; KEGG: bha:BH3716 galactosyltransferase YP_003193397.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB0368 putative ABC transporter, ATP- binding protein YP_003193398.1 PFAM: protein of unknown function DUF214; KEGG: dal:Dalk_4858 protein of unknown function DUF214 YP_003193399.1 TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein; KEGG: bha:BH2552 hypothetical protein YP_003193400.1 TIGRFAM: capsular exopolysaccharide family; KEGG: bha:BH3668 capsular polysaccharide biosynthesis YP_003193401.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bha:BH3669 capsular polysaccharide biosynthesis YP_003193402.1 PFAM: PHP domain protein; KEGG: bsu:BSU36240 hypothetical protein YP_003193403.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: pca:Pcar_1311 phosphomannomutase ManB YP_003193405.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bha:BH3652 UTP-glucose-1-phosphate uridylyltransferase YP_003193406.1 PFAM: glycosyl transferase family 4; KEGG: baa:BA_0288 glycosyl transferase YP_003193407.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_003193409.1 PFAM: O-antigen polymerase; KEGG: mxa:MXAN_3026 O-antigen polymerase family protein YP_003193410.1 PFAM: glycosyl transferase group 1; KEGG: dat:HRM2_19860 TuaH YP_003193411.1 PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3263 putative glycosyltransferase YP_003193412.1 PFAM: glycosyl transferase group 1; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein YP_003193413.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bsu:BSU35520 hypothetical protein YP_003193414.1 KEGG: hypothetical protein YP_003193415.1 PFAM: polysaccharide pyruvyl transferase; KEGG: baa:BA_1468 hypothetical protein YP_003193416.1 KEGG: mca:MCA1437 sugar transferase/glycosyl transferase, WecB/TagA/CpsF family protein; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_003193417.1 TIGRFAM: prevent-host-death family protein; KEGG: ccv:CCV52592_2220 prevent-host-death family protein YP_003193418.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: gur:Gura_1263 plasmid stabilization system protein YP_003193419.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: geo:Geob_1870 dTDP-glucose 4,6-dehydratase YP_003193420.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4- dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4- dehydrorhamnose 35-epimerase related; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; NAD- dependent epimerase/dehydratase; KEGG: baa:BA_1766 NAD dependent epimerase/dehydratase family YP_003193421.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: ecv:APECO1_1129 glucose-1-phosphate thymidylyltransferase YP_003193422.1 KEGG: eta:ETA_19480 hypothetical protein YP_003193423.1 PFAM: GtrA family protein; KEGG: baa:BA_0541 hypothetical protein YP_003193424.1 PFAM: glycosyl transferase family 2; KEGG: baa:BA_0542 glycosyl transferase YP_003193425.1 KEGG: sus:Acid_7933 adenylylsulfate kinase / phosphoadenylylsulfate reductase (thioredoxin); TIGRFAM: adenylylsulfate kinase; PFAM: adenylylsulfate kinase YP_003193426.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: bvi:Bcep1808_3211 lipopolysaccharide biosynthesis protein-like protein YP_003193427.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bvi:Bcep1808_3212 ABC transporter related YP_003193428.1 PFAM: ABC-2 type transporter; KEGG: nmu:Nmul_A2397 hypothetical protein YP_003193429.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: baa:BA_1765 NAD dependent epimerase/dehydratase family YP_003193430.1 KEGG: hch:HCH_02409 dTDP-4-dehydrorhamnose 3,5- epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003193431.1 KEGG: baa:BA_1766 NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; Male sterility domain; polysaccharide biosynthesis protein CapD; NAD-dependent epimerase/dehydratase YP_003193432.1 PFAM: Nucleotidyl transferase; KEGG: baa:BA_1763 NTP_transferase, Nucleotidyl transferase YP_003193433.1 PFAM: glycosyl transferase family 2; KEGG: apa:APP7_1479 glycosyl transferase, group 2 family protein YP_003193434.1 PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2879 glycosyl transferase family protein YP_003193435.1 KEGG: afr:AFE_0073 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; PFAM: sugar transferase YP_003193436.1 PFAM: O-antigen polymerase; Tetratricopeptide TPR_2 repeat protein; KEGG: dal:Dalk_4888 O-antigen polymerase YP_003193437.1 PFAM: S-layer domain protein; KEGG: bar:GBAA3338 S-layer protein, putative YP_003193438.1 PFAM: S-layer domain protein; KEGG: baa:BA_1454 Amidase_2, N-acetylmuramoyl-L- alanine amidase YP_003193439.1 PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein YP_003193440.1 KEGG: bsu:BSU09000 hypothetical protein YP_003193441.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_2552 secretion protein HlyD YP_003193442.1 PFAM: regulatory protein MarR; Penicillinase repressor; SMART: regulatory protein MarR; KEGG: baa:BA_1928 MarR family YP_003193443.1 KEGG: gme:Gmet_3465 outer membrane efflux protein YP_003193444.1 PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein YP_003193445.1 PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein YP_003193446.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: tbd:Tbd_2095 RNA polymerase sigma factor RpoE YP_003193447.1 KEGG: sfu:Sfum_1326 hypothetical protein YP_003193448.1 PFAM: S-layer domain protein; peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; KEGG: ade:Adeh_3524 peptidase S8 and S53 YP_003193449.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; KEGG: dvl:Dvul_2184 cell shape determining protein MreB YP_003193450.1 TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: bha:BH3740 transcriptional regulator of sigma- E- and sigma-K-dependent YP_003193451.1 PFAM: S-layer domain protein; KEGG: fimbriae-associated protein YP_003193452.1 PFAM: Peptidase M23; KEGG: vpa:VPA1649 putative TagE protein YP_003193453.1 TIGRFAM: stage II sporulation protein D; SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: bha:BH3748 stage II sporulation protein D YP_003193454.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_003193455.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_003193456.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_003193457.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_003193458.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_003193459.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_003193460.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: baa:BA_0406 ATP synthase B/B' CF(0) YP_003193461.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: baa:BA_0407 ATP synthase subunit C YP_003193462.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: dol:Dole_0801 ATP synthase F0, A subunit YP_003193463.1 PFAM: ATP synthase I; KEGG: bsu:BSU36880 ATP synthase (subunit I) YP_003193464.1 KEGG: bha:BH3762 hypothetical protein YP_003193465.1 KEGG: bar:GBAA5509 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; protein of unknown function DUF354 YP_003193466.1 PFAM: MazG nucleotide pyrophosphohydrolase YP_003193467.1 TIGRFAM: ComE operon protein 2; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bha:BH1334 late competence operon required for DNA binding and uptake YP_003193468.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_003193469.1 KEGG: bha:BH3767 ribose-5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase YP_003193470.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: bsu:BSU36930 hypothetical protein YP_003193471.1 PFAM: protein of unknown function DUF204; KEGG: bsu:BSU36940 hypothetical protein YP_003193472.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein; KEGG: bsu:BSU36950 hypothetical protein YP_003193473.1 PFAM: ABC-3 protein; transport system permease protein; KEGG: gme:Gmet_0493 hypothetical protein YP_003193474.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1394 ABC transporter ATP-binding protein YP_003193475.1 PFAM: periplasmic solute binding protein; KEGG: bsu:BSU02850 hypothetical protein YP_003193476.1 PFAM: ferric-uptake regulator; KEGG: bha:BH1396 FUR family transcriptional regulator YP_003193477.1 PFAM: high-affinity nickel-transporter; KEGG: sus:Acid_2371 high-affinity nickel- transporter YP_003193478.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: bar:GBAA0069 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II YP_003193479.1 KEGG: msl:Msil_2398 para-aminobenzoate synthase, subunit I; TIGRFAM: para-aminobenzoate synthase component I; para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein YP_003193480.1 PFAM: aminotransferase class IV; KEGG: baa:BA_1936 aminotransferase class IV YP_003193481.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: wol:WD1314 Fic family protein YP_003193482.1 KEGG: vvy:VV0103 hypothetical protein YP_003193483.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: pca:Pcar_3104 N-methylhydantoinase B/acetone carboxylase, alpha subunit YP_003193484.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: swi:Swit_0475 5-oxoprolinase (ATP- hydrolyzing) YP_003193485.1 KEGG: baa:BA_0022 hypothetical protein YP_003193486.1 PFAM: superoxide dismutase copper/zinc binding; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: reu:Reut_B4338 copper/zinc superoxide dismutase YP_003193487.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: bpy:Bphyt_0187 response regulator receiver modulated metal dependent phosphohydrolase YP_003193488.1 KEGG: pmy:Pmen_1189 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003193489.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bar:GBAA3661 DNA-binding response regulator YP_003193490.1 PFAM: protein of unknown function DUF191; KEGG: bha:BH2689 hypothetical protein YP_003193491.1 PFAM: purine or other phosphorylase family 1; KEGG: bha:BH2690 hypothetical protein YP_003193492.1 PFAM: protein of unknown function DUF45; KEGG: tdn:Suden_0949 hypothetical protein YP_003193493.1 KEGG: tdn:Suden_0948 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase YP_003193496.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gme:Gmet_0130 putative prophage repressor YP_003193499.1 PFAM: BRO domain protein; KEGG: xfn:XfasM23_1061 prophage antirepressor-like protein YP_003193500.1 PFAM: DnaB domain protein helicase domain protein; KEGG: pat:Patl_0251 replicative DNA helicase YP_003193503.1 KEGG: dal:Dalk_3580 hypothetical protein YP_003193504.1 PFAM: Transposase-like Mu; KEGG: btr:Btr_2641 transposase (class III) YP_003193506.1 KEGG: hin:HI1481 DNA transposition protein YP_003193508.1 KEGG: pol:Bpro_3769 hypothetical protein YP_003193510.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: baa:BA_1017 IstB-like ATP binding protein YP_003193511.1 PFAM: Mor transcription activator domain protein; KEGG: cvi:CV_2165 bacteriophage transcriptional regulator YP_003193513.1 KEGG: hypothetical protein YP_003193515.1 KEGG: bcj:BCAS0529 hypothetical protein TerS YP_003193516.1 PFAM: NGN domain protein; SMART: NGN domain protein; KEGG: oan:Oant_1942 NusG antitermination factor YP_003193517.1 PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: bha:BH0966 N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall hydrolase) YP_003193518.1 TIGRFAM: phage uncharacterized protein; KEGG: pag:PLES_15721 phage uncharacterized protein YP_003193520.1 KEGG: vvu:VV1_0114 hypothetical protein YP_003193531.1 KEGG: bsu:BSU12650 hypothetical protein YP_003193532.1 KEGG: bsu:BSU12660 hypothetical protein YP_003193533.1 PFAM: XkdN-like protein; KEGG: hypothetical protein YP_003193535.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: bar:GBAA4082 prophage LambdaBa02, tape measure protein, putative YP_003193536.1 PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: hypothetical protein YP_003193537.1 KEGG: hypothetical protein YP_003193539.1 KEGG: bsu:BSU12720 hypothetical protein YP_003193540.1 PFAM: Baseplate J family protein; KEGG: bsu:BSU25980 hypothetical protein YP_003193541.1 KEGG: bsu:BSU12740 hypothetical protein YP_003193546.1 KEGG: sbn:Sbal195_2897 hypothetical protein YP_003193547.1 KEGG: rsq:Rsph17025_2080 hypothetical protein YP_003193548.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: rsq:Rsph17025_2079 RNA-directed DNA polymerase (reverse transcriptase) YP_003193550.1 KEGG: sbm:Shew185_4455 restriction modification system DNA specificity subunit YP_003193552.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: cff:CFF8240_0990 type I restriction- modification system, M subunit YP_003193553.1 KEGG: cff:CFF8240_0991 restriction modification system DNA specificity subunit YP_003193554.1 SMART: HNH nuclease; KEGG: rde:RD1_A0048 OSJNBa0044K18.12 YP_003193555.1 KEGG: aba:Acid345_0185 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain-containing protein; metal- dependent phosphohydrolase HD sub domain; tryptophan leader peptide; SMART: GGDEF domain-containing protein YP_003193556.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: gsu:GSU1551 signal domain-containing protein YP_003193557.1 KEGG: glo:Glov_2112 hypothetical protein YP_003193558.1 KEGG: gsu:GSU1552 hypothetical protein YP_003193559.1 PFAM: Aldehyde Dehydrogenase; KEGG: pap:PSPA7_3909 gamma-glutamyl-gamma- aminobutyraldehyde dehydrogenase (gamma-Glu-gamma- aminobutyraldehyde dehydrogenase) YP_003193560.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gur:Gura_3568 iron-containing alcohol dehydrogenase YP_003193561.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3553 glycosyl transferase family protein YP_003193562.1 PFAM: Radical SAM domain protein; KEGG: gur:Gura_3559 radical SAM domain-containing protein YP_003193564.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: bha:BH3100 electron transfer flavoprotein (beta subunit) YP_003193565.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3926 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_003193566.1 PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; HI0933 family protein; KEGG: sfu:Sfum_3927 FAD dependent oxidoreductase YP_003193567.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: gbm:Gbem_1467 electron transfer flavoprotein alpha subunit YP_003193568.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gur:Gura_3558 NADH:flavin oxidoreductase/NADH oxidase YP_003193569.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; HI0933 family protein; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: gur:Gura_3558 NADH:flavin oxidoreductase/NADH oxidase YP_003193571.1 KEGG: hypothetical protein YP_003193572.1 TIGRFAM: redox-active disulfide protein 2; KEGG: cha:CHAB381_0336 hypothetical protein YP_003193573.1 PFAM: permease; KEGG: cha:CHAB381_0335 permease YP_003193574.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bar:GBAA3199 arsenical resistance operon repressor YP_003193575.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: cco:CCC13826_1424 CRISPR-associated protein Cas2 YP_003193576.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: cff:CFF8240_0665 CRISPR-associated protein Cas1 YP_003193577.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: cco:CCC13826_1423 CRISPR-associated protein Cas4 YP_003193578.1 KEGG: dat:HRM2_05520 putative CRISPR-associated helicase Cas3 (ATP-dependent DNA helicase); TIGRFAM: CRISPR-associated helicase Cas3; CRISPR- associated HD domain protein; PFAM: helicase domain protein; SMART: helicase domain protein; DEAD-like helicase YP_003193579.1 TIGRFAM: CRISPR-associated protein Cas5 YP_003193580.1 TIGRFAM: CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801; KEGG: cco:CCC13826_1420 CRISPR-associated protein, Csh2 family YP_003193582.1 TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57 YP_003193584.1 KEGG: gsu:GSU2827 hypothetical protein YP_003193585.1 PFAM: transposase IS200-family protein; KEGG: acr:Acry_3301 transposase IS200-family protein YP_003193586.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: sfu:Sfum_2781 C_GCAxxG_C_C family protein YP_003193587.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BSU23670 hypothetical protein YP_003193588.1 PFAM: copper amine oxidase domain protein; KEGG: hypothetical protein YP_003193589.1 PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; KEGG: SERPINB3; serpin peptidase inhibitor, clade B (ovalbumin), member 3 YP_003193590.1 PFAM: Addiction module toxin Txe/YoeB; KEGG: efe:EFER_2100 toxin of the YoeB-YefM toxin- antitoxin system YP_003193591.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: bac:BamMC406_4765 prevent-host-death family protein YP_003193592.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bsu:BSU00180 hypothetical protein YP_003193593.1 PFAM: membrane-bound metal-dependent hydrolase YP_003193594.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: dvu:DVU1360 UDP-glucose 4-epimerase YP_003193595.1 KEGG: geo:Geob_0318 hypothetical protein YP_003193596.1 PFAM: GtrA family protein; KEGG: geo:Geob_0319 GtrA family protein YP_003193597.1 PFAM: glycosyl transferase family 2; KEGG: bsu:BSU12890 hypothetical protein YP_003193598.1 PFAM: glycosyl transferase family 39; KEGG: bsu:BSU12880 hypothetical protein YP_003193600.1 KEGG: rpb:RPB_1962 hypothetical protein YP_003193603.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: bsu:BSU36280 hypothetical protein YP_003193604.1 PFAM: zinc finger SWIM domain protein; KEGG: bsu:BSU36270 hypothetical protein YP_003193605.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: glo:Glov_1880 glutamine synthetase, type I YP_003193606.1 KEGG: rde:RD1_3736 hypothetical protein YP_003193607.1 KEGG: hypothetical protein; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase YP_003193608.1 KEGG: hypothetical protein YP_003193610.1 KEGG: bha:BH2521 transposase (21) YP_003193612.1 KEGG: dat:HRM2_33650 hypothetical protein YP_003193613.1 PFAM: major facilitator superfamily MFS_1; KEGG: sat:SYN_01218 fosmidomycin resistance protein YP_003193614.1 PFAM: transcriptional regulator PadR family protein; KEGG: glo:Glov_0133 transcriptional regulator, PadR- like family YP_003193615.1 KEGG: bsu:BSU13530 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain-containing protein; ATP-binding region ATPase domain protein YP_003193616.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: pca:Pcar_1460 adenosylmethionine-8-amino-7- oxononanoate aminotransferase YP_003193617.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_003193618.1 KEGG: cha:CHAB381_0711 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003193619.1 PFAM: BioY protein; KEGG: sfu:Sfum_1749 BioY protein YP_003193621.1 KEGG: vha:VIBHAR_06435 hypothetical protein YP_003193623.1 KEGG: gur:Gura_3576 hypothetical protein YP_003193625.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003193626.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_003193627.1 PFAM: aminotransferase class V; KEGG: bja:bll6039 SgaA serine-glyoxylate aminotransferase YP_003193628.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: bha:BH0876 methyl-accepting chemotaxis protein YP_003193631.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gur:Gura_3746 putative prophage repressor YP_003193632.1 KEGG: bsu:BSU13250 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver YP_003193633.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_003193634.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_003193635.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: bha:BH4029 replicative DNA helicase YP_003193636.1 KEGG: bha:BH3051 ATP-dependent proteinase La; TIGRFAM: ATP-dependent protease, Lon family; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; magnesium chelatase ChlI subunit; SMART: AAA ATPase YP_003193637.1 TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: gme:Gmet_2841 50S ribosomal protein L9 YP_003193638.1 KEGG: bsu:BSU40520 hypothetical protein YP_003193639.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_003193640.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: baa:BA_0580 single-strand binding protein family YP_003193641.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_003193642.1 PFAM: protein of unknown function DUF951; KEGG: bha:BH4052 hypothetical protein YP_003193643.1 catalyzes the removal of amino acids from the N termini of peptides YP_003193644.1 PFAM: Colicin V production protein; KEGG: bsu:BSU28600 hypothetical protein YP_003193645.1 KEGG: prw:PsycPRwf_1518 hypothetical protein YP_003193646.1 TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256; KEGG: bsu:BSU40950 hypothetical protein YP_003193647.1 KEGG: gbm:Gbem_3956 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003193648.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bsu:BSU40970 chromosome partitioning protein; transcriptional regulator YP_003193649.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: bsu:BSU41000 glucose-inhibited division protein B YP_003193650.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_003193651.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_003193652.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: bha:BH4063 spoIIIJ-associated protein YP_003193653.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: cco:CCC13826_1623 putative inner membrane protein translocase component YidC YP_003193654.1 PFAM: protein of unknown function DUF37; KEGG: gsu:GSU3467 hypothetical protein YP_003193655.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: baa:BA_0594 ribonuclease_P, Ribonuclease P YP_003193656.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: baa:BA_0595 large subunit ribosomal protein L34