-- dump date 20120504_143415 -- class Genbank::CDS -- table cds_note -- id note YP_386497.1 KEGG: dvm:DvMF_2081 chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA C-terminal; Chromosomal replication control, initiator (DnaA)/regulator (Hda); SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core YP_386498.1 SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dvl:Dvul_0006 subunit beta; PFAM: DNA polymerase III, beta chain YP_386499.1 TIGRFAM: DNA gyrase, subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: dvm:DvMF_2083 DNA gyrase, B subunit; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like YP_386500.1 SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: dvm:DvMF_2084 DNA gyrase, A subunit; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_386501.2 KEGG: dvm:DvMF_2085 lipoprotein YP_386505.1 PFAM: Methyltransferase type 11; KEGG: dvl:Dvul_0026 methyltransferase type 11 YP_386507.1 TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: dvm:DvMF_2037 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding YP_386508.1 TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: dvl:Dvul_0028 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); GAD domain; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_386509.1 KEGG: dvl:Dvul_0029 peptide deformylase; TIGRFAM: Formylmethionine deformylase; PFAM: Formylmethionine deformylase YP_386510.1 TIGRFAM: Methionyl-tRNA formyltransferase; KEGG: dvl:Dvul_0030 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal YP_386511.1 PFAM: Protein of unknown function DUF116; KEGG: dvl:Dvul_0031 hypothetical protein YP_386512.1 PFAM: Protein of unknown function DUF116; KEGG: dvl:Dvul_0031 hypothetical protein YP_386513.1 PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; KEGG: dvu:DVU3363 sun protein YP_386515.2 PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; KEGG: drt:Dret_1391 DnaJ-like, subfamily C, member 28 YP_386516.1 KEGG: dsa:Desal_0010 hypothetical protein YP_386517.1 PFAM: Mammalian cell entry related; KEGG: dma:DMR_00200 hypothetical protein YP_386518.1 PFAM: ABC transporter-like; KEGG: dsa:Desal_0008 ABC transporter; SMART: ATPase, AAA+ type, core YP_386519.1 PFAM: Protein of unknown function DUF140; KEGG: dsa:Desal_0007 hypothetical protein YP_386520.1 KEGG: dsa:Desal_0006 anti-sigma-factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS YP_386524.1 PFAM: Carbohydrate/purine kinase; KEGG: dvl:Dvul_0034 ribokinase-like domain-containing protein YP_386525.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: dvm:DvMF_2045 ParB-like partition protein; SMART: ParB-like nuclease YP_386526.1 KEGG: dvm:DvMF_2046 hypothetical protein YP_386527.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dvm:DvMF_2047 cobyrinic acid ac-diamide synthase YP_386529.2 KEGG: dvm:DvMF_2048 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_386532.2 KEGG: dsa:Desal_3833 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_386533.1 PFAM: Nodulation efficiency, NfeD; KEGG: dma:DMR_00090 hypothetical membrane protein YP_386534.1 KEGG: dvu:DVU4021 hypothetical protein YP_386535.1 TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: dvl:Dvul_0041 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: Flavoprotein; DNA/pantothenate metabolism flavoprotein, C-terminal YP_386536.1 KEGG: drt:Dret_2496 lipoprotein YP_386538.1 KEGG: dvl:Dvul_0043 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein YP_386539.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dsa:Desal_3826 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_386540.1 KEGG: dvm:DvMF_2055 2-ketoisovalerate ferredoxin reductase; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal YP_386541.1 KEGG: dvl:Dvul_0046 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_386542.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvm:DvMF_2057 pyruvate ferredoxin/flavodoxin oxidoreductase YP_386543.2 KEGG: bvu:BVU_0006 DNA repair photolyase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_386544.1 PFAM: UspA; KEGG: dba:Dbac_0701 UspA domain protein YP_386546.2 KEGG: dvl:Dvul_1035 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_386550.1 PFAM: Aldehyde dehydrogenase; Proline dehydrogenase; KEGG: dvl:Dvul_0070 delta-1-pyrroline-5-carboxylate dehydrogenase YP_386552.1 TIGRFAM: Dihydroorotate dehydrogenase, class 1, core; KEGG: dvl:Dvul_0072 dihydroorotate dehydrogenase; PFAM: Dihydroorotate dehydrogenase, class 1/ 2 YP_386553.1 PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dvm:DvMF_2142 dihydroorotate oxidase B, electron transfer subunit YP_386554.2 PFAM: Peptidase U32; KEGG: dvl:Dvul_0074 peptidase U32 YP_386555.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: dvm:DvMF_2112 ADP-ribosylation/crystallin J1 YP_386556.1 KEGG: dvm:DvMF_2111 hypothetical protein YP_386558.2 TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: dvm:DvMF_2263 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related YP_386559.1 KEGG: dvm:DvMF_2266 lipoprotein YP_386560.1 PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: dvm:DvMF_2267 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin YP_386561.1 TIGRFAM: Branched-chain amino acid aminotransferase I; KEGG: dvl:Dvul_0190 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_386562.1 TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: dvu:DVU3198 DNA polymerase III subunits gamma and tau; SMART: ATPase, AAA+ type, core YP_386563.1 KEGG: dvm:DvMF_2270 hypothetical protein; TIGRFAM: Uncharacterized protein family UPF0133; PFAM: Uncharacterized protein family UPF0133 YP_386564.2 KEGG: dvl:Dvul_0187 recombination protein RecR; TIGRFAM: RecR protein; HAMAP: Recombination protein recR YP_386566.1 KEGG: das:Daes_0976 STE24 endopeptidase; PFAM: Peptidase M48, Ste24p YP_386567.1 KEGG: dal:Dalk_3922 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_386569.1 PFAM: Protein of unknown function DUF309; KEGG: glo:Glov_2144 protein of unknown function DUF309 YP_386570.1 KEGG: dvl:Dvul_0185 TatD family hydrolase; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related YP_386571.1 PFAM: Glycosyl transferase, group 1; KEGG: dvl:Dvul_0186 hypothetical protein YP_386572.1 TIGRFAM: translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; KEGG: dvl:Dvul_2877 eIF-2B alpha/beta/delta-related uncharacterized proteins; PFAM: Initiation factor 2B related YP_386573.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: gme:Gmet_0840 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_386575.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: dvm:DvMF_2237 tryptophan synthase subunit beta YP_386577.1 TIGRFAM: Iron hydrogenase, subset; KEGG: dma:DMR_12960 Fe hydrogenase large subunit; PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_386578.1 PFAM: Iron hydrogenase, small subunit-like; KEGG: dma:DMR_12950 Fe hydrogenase small subunit; SMART: Iron hydrogenase, small subunit-like YP_386581.2 KEGG: bfr:BF2780 O-actetyl transferase related protein YP_386582.1 KEGG: vpa:VPA1591 dihydropteridine reductase; PFAM: Nitroreductase-like YP_386583.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: xau:Xaut_2757 LysR family transcriptional regulator YP_386584.1 KEGG: dsa:Desal_2654 hypothetical protein YP_386585.1 TIGRFAM: CoA enzyme activase; KEGG: dba:Dbac_1928 CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type YP_386586.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: dba:Dbac_1927 2-hydroxyglutaryl-CoA dehydratase D-component YP_386588.1 PFAM: Hydantoinaseoxoprolinase, N-terminal; Hydantoinase/oxoprolinase; KEGG: dvl:Dvul_2933 hydantoinase/oxoprolinase YP_386589.1 KEGG: dvm:DvMF_2176 hypothetical protein YP_386591.1 PFAM: rRNA methylase; KEGG: dvm:DvMF_2114 rRNA methylase YP_386592.1 KEGG: dvl:Dvul_0107 hypothetical protein YP_386593.1 PFAM: Protein of unknown function DUF939, bacterial; KEGG: dsa:Desal_2701 hypothetical protein YP_386594.1 PFAM: UspA; KEGG: dvm:DvMF_1409 UspA domain protein YP_386595.1 TIGRFAM: Asparaginyl-tRNA synthetase, class IIb; KEGG: dvu:DVU0007 asparaginyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type YP_386598.1 PFAM: Glutamine synthetase, catalytic region; KEGG: dvm:DvMF_1590 glutamine synthetase catalytic region YP_386600.1 TIGRFAM: Glutamine synthetase type I; KEGG: dvm:DvMF_2099 glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp YP_386602.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: dvu:DVU3389 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger YP_386603.1 PFAM: Peptidase M48, Ste24p; KEGG: dvl:Dvul_0012 peptidase M48, Ste24p YP_386604.1 KEGG: dvm:DvMF_2067 hypothetical protein YP_386605.1 KEGG: dvu:DVU3381 transcriptional regulatory protein ZraR; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_386606.1 KEGG: dvm:DvMF_2148 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_386607.1 KEGG: dvm:DvMF_2147 zinc resistance-associated protein YP_386609.1 TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: dvm:DvMF_2031 ribonucleotide-diphosphate reductase subunit alpha; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal YP_386610.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Cell division ATP-binding protein FtsE; KEGG: dvm:DvMF_2032 cell division ATP-binding protein FtsE; PFAM: ABC transporter-like YP_386611.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dvm:DvMF_2033 protein of unknown function DUF214 YP_386612.1 TIGRFAM: Dihydroxy-acid dehydratase; KEGG: dvu:DVU3373 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_386615.1 TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: dvm:DvMF_2264 DNA binding domain protein, excisionase YP_386616.1 KEGG: dvm:DvMF_2024 pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4 YP_386617.1 KEGG: dvm:DvMF_2025 hypothetical protein YP_386618.1 PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: dvu:DVU3189 NOL1/NOP2/sun family protein YP_386619.1 KEGG: sur:STAUR_7898 3'(2'),5'-bisphosphate nucleotidase; TIGRFAM: 3(2),5 -bisphosphate nucleotidase, bacterial; PFAM: Inositol monophosphatase YP_386620.2 PFAM: NLP/P60; KEGG: dsa:Desal_3232 NLP/P60 protein YP_386621.1 KEGG: dvl:Dvul_0200 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_386622.2 KEGG: dvm:DvMF_2030 MerR family transcriptional regulator YP_386623.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: ttr:Tter_2423 4-hydroxythreonine-4-phosphate dehydrogenase YP_386624.1 PFAM: Protein of unknown function, DUF1537; KEGG: pjd:Pjdr2_3637 type III effector Hrp-dependent outers YP_386625.1 PFAM: 2-keto-3-deoxygluconate permease; KEGG: asu:Asuc_0447 2-keto-3-deoxygluconate permease YP_386626.2 KEGG: dda:Dd703_2190 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_386628.1 PFAM: Protein of unknown function DUF318, transmembrane; KEGG: dvu:DVU3386 permease YP_386629.1 PFAM: Ferritin/Dps protein; KEGG: dvl:Dvul_1675 ferritin, Dps family protein YP_386632.1 TIGRFAM: Adenine deaminase; KEGG: dba:Dbac_1063 adenine deaminase; PFAM: Amidohydrolase 1 YP_386633.1 PFAM: Bacterial inner-membrane translocator; KEGG: drm:Dred_2174 inner-membrane translocator YP_386634.1 PFAM: Bacterial inner-membrane translocator; KEGG: mta:Moth_1951 inner-membrane translocator YP_386635.1 PFAM: ABC transporter-like; KEGG: dsa:Desal_2448 ABC transporter; SMART: ATPase, AAA+ type, core YP_386636.1 PFAM: Phosphoribosyltransferase; KEGG: dra:DR_0878 adenine phosphoribosyltransferase YP_386637.1 PFAM: Basic membrane lipoprotein; KEGG: ssm:Spirs_2769 basic membrane lipoprotein YP_386641.1 PFAM: ABC-type glycine betaine transport system, substrate-binding region; KEGG: drt:Dret_1852 substrate-binding region of ABC-type glycine betaine transport system YP_386642.1 PFAM: ABC-type glycine betaine transport system, substrate-binding region; KEGG: drt:Dret_1852 substrate-binding region of ABC-type glycine betaine transport system YP_386643.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_386646.1 KEGG: dvm:DvMF_2128 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein YP_386647.1 SMART: Beta-lactamase-like; KEGG: dvl:Dvul_0081 beta-lactamase domain-containing protein YP_004849517.1 PFAM: Excinuclease ABC, C subunit, N-terminal; KEGG: dvm:DvMF_2126 excinuclease ABC C subunit domain protein YP_386648.2 KEGG: dvm:DvMF_2125 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_386649.1 KEGG: dol:Dole_0215 hypothetical protein YP_386650.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0464 molybdenum ABC transporter permease YP_386651.1 TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; KEGG: dsa:Desal_0303 molybdenum ABC transporter periplasmic molybdate-binding protein YP_386653.1 KEGG: dvm:DvMF_2175 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_386654.1 PFAM: AzlC-like; KEGG: drt:Dret_1470 AzlC family protein YP_386655.1 PFAM: Branched-chain amino acid transport; KEGG: dsa:Desal_3217 branched-chain amino acid ABC transporter YP_386656.1 KEGG: dsa:Desal_2219 signal transduction histidine kinase LytS; PFAM: Signal transduction histidine kinase, internal region; Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; GAF YP_386657.1 KEGG: dsa:Desal_2218 LytR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: LytTr DNA-binding region; Signal transduction response regulator, receiver region YP_386659.1 PFAM: DSBA oxidoreductase; KEGG: dvl:Dvul_2927 DsbA oxidoreductase YP_386662.1 PFAM: ABC transporter-like; KEGG: dvl:Dvul_2857 ABC transporter; SMART: ATPase, AAA+ type, core YP_386663.2 KEGG: dvm:DvMF_1919 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_386664.1 KEGG: dvm:DvMF_1918 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_386667.1 KEGG: dvl:Dvul_0177 threonine synthase; TIGRFAM: Threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_386668.1 KEGG: dvm:DvMF_1944 membrane protein; TIGRFAM: Membrane protein YgiH; PFAM: Protein of unknown function DUF205 YP_386669.1 PFAM: Ribonuclease II/R; KEGG: dvm:DvMF_1943 ribonuclease II YP_386670.2 PFAM: AICARFT/IMPCHase bienzyme, formylation region; KEGG: dvu:DVU3206 phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, formylation region YP_004849518.1 KEGG: dvm:DvMF_1941 hypothetical protein YP_386671.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: dvl:Dvul_0182 lytic transglycosylase, catalytic YP_386672.1 SMART: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; KEGG: dvl:Dvul_0183 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase YP_386673.1 KEGG: dvu:DVU3203 DNA polymerase III subunit delta' YP_386674.1 KEGG: dvm:DvMF_1937 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_386675.1 TIGRFAM: DNA photolyase, class 2; KEGG: dvl:Dvul_2851 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal YP_386676.1 KEGG: dvl:Dvul_2852 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_386677.2 KEGG: dvu:DVU0297 hypothetical protein YP_386678.1 KEGG: dvm:DvMF_1567 D-lactate dehydrogenase (cytochrome); PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_386679.2 KEGG: dps:DP1028 glutamine ABC transporter, permease; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_386680.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_1569 ABC transporter related; SMART: ATPase, AAA+ type, core YP_386681.1 KEGG: dps:DP1030 amino acid ABC transporter, permease; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_386682.1 KEGG: dvl:Dvul_2548 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_386683.1 KEGG: dvm:DvMF_1572 flavin reductase domain protein FMN-binding; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding YP_386684.1 PFAM: GCN5-related N-acetyltransferase; KEGG: das:Daes_0846 GCN5-like N-acetyltransferase YP_386685.1 TIGRFAM: Protein of unknown function DUF160; KEGG: dsa:Desal_3316 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM YP_386687.1 PFAM: Adenosine specific kinase; KEGG: dat:HRM2_41610 hypothetical protein YP_386689.1 KEGG: dvm:DvMF_2243 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_386690.1 KEGG: dvl:Dvul_0264 stress responsive alpha-beta barrel domain-containing protein; PFAM: Stress responsive alpha-beta barrel; SMART: Stress responsive alpha-beta barrel YP_386692.1 TIGRFAM: Seryl-tRNA synthetase, class IIa; KEGG: dvl:Dvul_2740 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal YP_386693.1 KEGG: dvm:DvMF_2225 hypothetical protein YP_386697.1 KEGG: cco:CCC13826_0998 hypothetical protein YP_386698.1 PFAM: Class I peptide chain release factor; KEGG: dsa:Desal_0067 class I peptide chain release factor YP_386699.1 PFAM: Type IV pilus assembly PilZ; KEGG: dvl:Dvul_2738 type IV pilus assembly PilZ YP_386700.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dvl:Dvul_2737 dinitrogenase iron-molybdenum cofactor biosynthesis YP_386701.1 PFAM: SEC-C motif; KEGG: dvl:Dvul_2736 SecC motif-containing protein YP_386702.1 KEGG: dvm:DvMF_2258 hypothetical protein YP_386704.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: dps:DP1702 hypothetical protein YP_386705.1 KEGG: dvl:Dvul_2696 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_386706.1 KEGG: dvu:DVU0283 AhpF family protein/thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region YP_386707.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold; PAS fold-4; KEGG: dvl:Dvul_2629 diguanylate cyclase with PAS/PAC sensor; SMART: Diguanylate cyclase, predicted; PAS; PAC motif YP_386708.1 TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: NUDIX hydrolase domain; HhH-GPD domain; Helix-hairpin-helix motif; KEGG: dvu:DVU0282 A/G-specific adenine glycosylase; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif YP_386709.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: drt:Dret_2121 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_386710.1 PFAM: Aminoglycoside phosphotransferase; KEGG: drt:Dret_2120 hypothetical protein YP_386711.1 KEGG: dvm:DvMF_1927 glycosyl transferase 2 YP_386712.1 PFAM: Amine oxidase; KEGG: dvu:DVU0295 amine oxidase, flavin-containing YP_386713.1 PFAM: Peptidase M24, structural domain; Creatinase; KEGG: dvm:DvMF_1929 peptidase M24 YP_386714.1 KEGG: dma:DMR_16200 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_386716.2 KEGG: dvm:DvMF_0627 Sel1 domain protein repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like YP_386717.1 KEGG: dvm:DvMF_0626 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_386718.1 PFAM: Protein of unknown function DUF1641; KEGG: dvl:Dvul_1202 hypothetical protein YP_386719.1 PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; KEGG: dvm:DvMF_0624 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_386720.1 KEGG: dvl:Dvul_1204 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_386721.1 PFAM: Protein of unknown function DUF748; KEGG: das:Daes_0926 hypothetical protein YP_386723.1 PFAM: Carbon starvation protein CstA; KEGG: dba:Dbac_2399 carbon starvation protein CstA YP_386724.2 SMART: RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; KEGG: dvl:Dvul_2033 tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 YP_386725.1 TIGRFAM: Conserved hypothetical protein CHP00282; KEGG: dvl:Dvul_2034 metallophosphoesterase YP_386726.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal region, domain I/II; MoeA, C-terminal, domain IV; Molybdopterin binding; KEGG: dvm:DvMF_1358 molybdenum cofactor synthesis domain protein; SMART: Molybdopterin binding YP_386728.1 PFAM: ABC transporter-like; KEGG: dsa:Desal_2874 ABC transporter; SMART: ATPase, AAA+ type, core YP_386729.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dsa:Desal_2875 binding-protein-dependent transport systems inner membrane component YP_386730.1 KEGG: das:Daes_1323 ABC transporter periplasmic substrate-binding protein YP_386731.2 KEGG: dsa:Desal_0351 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_386732.1 KEGG: dvl:Dvul_2879 NAD-dependent epimerase/dehydratase YP_386733.1 PFAM: GPR1/FUN34/yaaH; KEGG: dsa:Desal_0840 GPR1/FUN34/YaaH family protein YP_386735.2 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvl:Dvul_2880 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; Signal transduction response regulator, receiver region YP_386736.2 PFAM: Fumarate lyase; Fumarase C, C-terminal; TIGRFAM: Fumarate hydratase, class II; HAMAP: Fumarate hydratase class II; KEGG: dba:Dbac_0083 fumarate hydratase YP_386737.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: dvm:DvMF_1101 extracellular solute-binding protein family 3 YP_386739.1 PFAM: Peptidase M23; KEGG: dvl:Dvul_0148 peptidase M23B YP_386740.1 PFAM: PP-loop; KEGG: dvl:Dvul_0147 PP-loop domain-containing protein YP_386742.1 KEGG: dsa:Desal_2589 hypothetical protein YP_386743.1 KEGG: dvl:Dvul_0146 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6 YP_386744.1 TIGRFAM: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, cysteine-rich region; Heat shock protein DnaJ, N-terminal; KEGG: dvl:Dvul_0145 chaperone protein DnaJ; SMART: Heat shock protein DnaJ, N-terminal YP_386745.1 KEGG: dvm:DvMF_2301 molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region; PFAM: Molybdopterin cofactor biosynthesis MoaC region YP_386746.1 KEGG: dvu:DVU3052 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_386747.1 PFAM: NUDIX hydrolase domain; KEGG: dvm:DvMF_2380 NUDIX hydrolase YP_386748.1 PFAM: Protein of unknown function DUF606; KEGG: dvm:DvMF_2381 protein of unknown function DUF606 YP_386749.1 TIGRFAM: Haemerythrin-like, metal-binding; KEGG: dvl:Dvul_0327 hemerythrin-like metal-binding protein YP_386750.1 SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; KEGG: dvm:DvMF_2382 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding YP_386751.1 PFAM: Aminotransferase, class IV; KEGG: dvm:DvMF_2383 aminotransferase class IV YP_386752.2 PFAM: Glycosyl transferase, group 1; KEGG: dvm:DvMF_2384 glycosyl transferase group 1 YP_386753.2 KEGG: dvl:Dvul_0331 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif YP_386754.2 PFAM: Extracellular ligand-binding receptor; KEGG: dvu:DVU0712 amino acid ABC transporter periplasmic-binding protein YP_386755.1 PFAM: Bacterial inner-membrane translocator; KEGG: dba:Dbac_3207 inner-membrane translocator YP_386756.1 PFAM: Bacterial inner-membrane translocator; KEGG: dvl:Dvul_2252 inner-membrane translocator YP_386757.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_2753 ABC transporter related; SMART: ATPase, AAA+ type, core YP_386758.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_2754 ABC transporter related; SMART: ATPase, AAA+ type, core YP_386759.2 KEGG: vsp:VS_1816 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; MASE1; SMART: Metal-dependent phosphohydrolase, HD region YP_386760.1 KEGG: dvm:DvMF_2397 hypothetical protein YP_386761.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dpr:Despr_1763 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein YP_386762.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dba:Dbac_3344 GCN5-related N-acetyltransferase YP_386763.1 PFAM: Cysteine-rich region, CCG; KEGG: dat:HRM2_12820 iron-sulfur cluster-binding protein YP_386764.2 KEGG: dvl:Dvul_2706 hypothetical protein YP_386765.1 TIGRFAM: Penicillin-binding protein 1C; KEGG: azl:AZL_011020 penicillin binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal YP_386766.2 PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; KEGG: azl:AZL_011010 hypothetical protein YP_386767.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dvl:Dvul_2803 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_386768.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dvl:Dvul_2802 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_386769.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_1827 binding-protein-dependent transport systems inner membrane component YP_386770.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_1828 binding-protein-dependent transport systems inner membrane component YP_386771.2 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dsa:Desal_2969 extracellular solute-binding protein family 5 YP_386772.1 KEGG: dal:Dalk_4468 aminotransferase class I and II; PFAM: Aminotransferase, class I/II YP_386773.3 KEGG: dvl:Dvul_2681 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic YP_386774.1 PFAM: Radical SAM; KEGG: dvm:DvMF_1818 radical SAM domain protein YP_386777.1 PFAM: CheC-like protein; KEGG: dvl:Dvul_2679 chemotaxis protein CheX YP_386778.1 KEGG: dvm:DvMF_1816 TPR repeat-containing protein YP_386779.1 KEGG: dvl:Dvul_2677 hypothetical protein YP_386780.1 PFAM: Protein of unknown function DUF1007; KEGG: dsa:Desal_0127 ABC transporter periplasmic protein YP_386781.1 PFAM: Nickel/cobalt transporter, high-affinity; KEGG: das:Daes_0361 hypothetical protein YP_386782.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_2676 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_386783.1 KEGG: dvm:DvMF_1813 hypothetical protein YP_386784.1 KEGG: dvl:Dvul_2661 hypothetical protein YP_386785.1 KEGG: mta:Moth_0725 sigma-54 dependent trancsriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, propionate catabolism activator, N-terminal; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; PAS YP_386787.1 PFAM: Cytochrome c, class I; KEGG: drt:Dret_0454 cytochrome c family protein YP_386788.1 KEGG: dvl:Dvul_0758 hypothetical protein YP_386789.1 PFAM: Polyketide cyclase/dehydrase; KEGG: afr:AFE_2804 hypothetical protein YP_386790.1 KEGG: dvm:DvMF_1811 pantothenate kinase; TIGRFAM: Bordetella pertussis Bvg accessory factor; PFAM: Bordetella pertussis Bvg accessory factor YP_386791.1 TIGRFAM: Enolase; KEGG: dvl:Dvul_2659 phosphopyruvate hydratase; PFAM: Enolase, C-terminal; Enolase, N-terminal YP_386792.1 KEGG: dvl:Dvul_2658 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_386794.1 KEGG: dvm:DvMF_1808 protein of unknown function DUF1078 domain protein; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body FlaE; Flagellar basal body rod protein, N-terminal YP_386795.1 PFAM: NapC/NirT cytochrome c, N-terminal; KEGG: dal:Dalk_3571 NapC/NirT cytochrome c domain protein YP_386796.1 KEGG: dal:Dalk_2563 hypothetical protein YP_386797.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dvm:DvMF_1807 protein of unknown function DUF6 transmembrane YP_386799.1 PFAM: ROSMUCR transcriptional regulator; KEGG: dvm:DvMF_0974 transcriptional regulator, MucR family YP_386800.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dvm:DvMF_1805 glyoxalase/bleomycin resistance protein/dioxygenase YP_386801.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dsa:Desal_0285 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_386802.2 PFAM: Redoxin; KEGG: dvu:DVU3076 hypothetical protein YP_386803.1 KEGG: dvm:DvMF_2347 hypothetical protein YP_386804.1 KEGG: dvm:DvMF_2348 binding-protein-dependent transport systems inner membrane component YP_386805.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_2349 binding-protein-dependent transport systems inner membrane component YP_386806.1 KEGG: mgm:Mmc1_3482 Cl-channel, voltage-gated family protein; PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_386808.1 PFAM: FAD linked oxidase, N-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Cysteine-rich region, CCG; FAD-linked oxidase, C-terminal; KEGG: dvl:Dvul_0306 FAD linked oxidase domain-containing protein YP_386810.1 TIGRFAM: Resolvase, holliday junction-type, YqgF-like; PFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: dvm:DvMF_2352 Holliday junction resolvase YqgF; SMART: Resolvase, RNase H-like fold YP_386811.1 KEGG: dvl:Dvul_0308 aminodeoxychorismate lyase; TIGRFAM: Uncharacterized protein family YceG-like; PFAM: Uncharacterized protein family YceG-like YP_386812.1 KEGG: dsa:Desal_3674 hypothetical protein YP_386814.1 TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold-4; Helix-turn-helix, Fis-type; KEGG: dvm:DvMF_1213 sigma54 specific transcriptional regulator, fis family; SMART: ATPase, AAA+ type, core YP_386815.1 KEGG: dvm:DvMF_1212 hypothetical protein YP_386816.1 KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_386817.1 KEGG: dvm:DvMF_1769 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_386818.1 SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: sfu:Sfum_0655 hypothetical protein YP_386819.1 KEGG: dvm:DvMF_1211 response regulator receiver protein YP_386820.1 KEGG: tye:THEYE_A0739 response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_386821.1 KEGG: dsa:Desal_3507 CBS domain containing protein YP_386822.1 PFAM: Sodium/sulphate symporter; KEGG: das:Daes_1093 sodium/sulphate symporter YP_386823.1 KEGG: dat:HRM2_40310 sigma-54 dependent two component transcriptional regulator (fis family protein); PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_386824.1 KEGG: das:Daes_0066 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_386825.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aha:AHA_0456 acetyltransferase YP_386827.1 TIGRFAM: Histidine biosynthesis, HisF; KEGG: dvm:DvMF_2304 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis YP_386828.1 KEGG: dvl:Dvul_2695 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I, C-terminal YP_386829.1 SMART: MGS-like; TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; KEGG: dvm:DvMF_2306 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like; Carbamoyl phosphate synthase, large subunit, N-terminal YP_386830.1 TIGRFAM: Amidophosphoribosyl transferase; KEGG: dvl:Dvul_2807 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase YP_386831.1 TIGRFAM: KpsF/GutQ; KEGG: dvm:DvMF_2308 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core YP_386832.1 PFAM: Thioesterase superfamily; KEGG: dvm:DvMF_2309 thioesterase superfamily protein YP_386833.1 PFAM: Glycosyl transferase, family 2; KEGG: dvu:DVU3287 glycosyl transferase group 2 family protein YP_386835.1 PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: dvm:DvMF_2250 aromatic hydrocarbon degradation membrane protein YP_386836.1 KEGG: dvm:DvMF_2251 hypothetical protein YP_386837.1 KEGG: dvm:DvMF_2252 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_386838.1 KEGG: dsa:Desal_1524 precorrin-8X methylmutase; PFAM: Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core YP_386839.1 KEGG: dvm:DvMF_2254 cobyrinic acid a,c-diamide synthase; TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ-like glutamine amidotransferase YP_386840.1 KEGG: dvm:DvMF_2255 hypothetical protein YP_386842.1 PFAM: ROSMUCR transcriptional regulator; KEGG: dvm:DvMF_2256 transcriptional regulator, MucR family YP_386843.2 KEGG: dvl:Dvul_0296 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_386844.1 PFAM: Transmembrane pair, bacterial; KEGG: dvl:Dvul_2673 transmembrane pair domain-containing protein YP_386845.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_A0567 LysR family transcriptional regulator YP_386846.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Flagellar protein export ATPase, FliI; ATPase, type III secretion system, FliI/YscN; KEGG: dvl:Dvul_2671 flagellar protein export ATPase FliI; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain YP_386847.1 KEGG: dvl:Dvul_2670 flagellar assembly protein FliH YP_386848.1 KEGG: dvm:DvMF_2288 flagellar motor switch protein FliG; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG; Magnesium transporter, MgtE intracellular region YP_386849.1 KEGG: dvm:DvMF_2287 flagellar M-ring protein FliF; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal YP_386850.1 KEGG: dvl:Dvul_2667 flagellar hook-basal body complex subunit FliE; TIGRFAM: Flagellar hook-basal body complex protein FliE; PFAM: Flagellar hook-basal body complex protein FliE YP_386851.1 KEGG: dvl:Dvul_2666 flagellar basal-body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_386852.2 KEGG: dvl:Dvul_2665 flagellar basal body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal YP_386853.2 KEGG: dvm:DvMF_2283 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_386854.1 KEGG: dvm:DvMF_2280 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_386855.1 TIGRFAM: Sialic acid O-acyltransferase, NeuD; KEGG: gur:Gura_4087 carbonic anhydrase YP_386856.1 PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: dsa:Desal_3620 polysaccharide biosynthesis protein CapD YP_386857.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dsa:Desal_3619 DegT/DnrJ/EryC1/StrS aminotransferase YP_386858.1 PFAM: Bacterial sugar transferase; Glycosyl transferase, group 1; KEGG: dsa:Desal_3614 glycosyl transferase group 1 YP_386859.1 KEGG: dvm:DvMF_2277 hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein YP_386860.1 KEGG: dvl:Dvul_2657 hydrogenase formation HypD protein; TIGRFAM: Hydrogenase formation HypD protein; PFAM: Hydrogenase formation HypD protein YP_386861.1 KEGG: dvl:Dvul_2650 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_386862.1 TIGRFAM: D-alanine--D-alanine ligase; KEGG: dvl:Dvul_2649 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal YP_386863.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; KEGG: dvl:Dvul_2648 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YP_386865.2 KEGG: dma:DMR_12590 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_386866.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; PAS fold; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_2273 PAS/PAC sensor hybrid histidine kinase; SMART: Signal transduction response regulator, receiver region; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; ATP-binding region, ATPase-like YP_386867.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: chy:CHY_1128 oligopeptide/dipeptide ABC transporter peptide-binding protein YP_386868.1 KEGG: dvm:DvMF_2272 hypothetical protein YP_386869.1 KEGG: dvl:Dvul_0149 phosphoesterase, PA-phosphatase related; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_386870.1 PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulfide oxidoreductase, dimerisation; KEGG: dvl:Dvul_0176 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; SMART: Rhodanese-like YP_386872.1 KEGG: dvl:Dvul_0152 small GTP-binding protein; TIGRFAM: GTP-binding protein, HflX; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related YP_386873.2 KEGG: dvm:DvMF_1946 phosphoribosylaminoimidazolecarboxamide formyltransferase; PFAM: MGS-like; AICARFT/IMPCHase bienzyme, formylation region YP_386874.1 KEGG: dvl:Dvul_0154 flagellar biosynthetic protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein YP_386875.1 KEGG: dvm:DvMF_2015 flagellar biosynthesis protein FlhB; TIGRFAM: Flagellar biosynthetic protein FlhB; PFAM: Type III secretion exporter YP_386876.1 KEGG: dvl:Dvul_0156 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP YP_386877.1 PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: dvm:DvMF_2013 flagellar biosynthesis protein FlhF YP_386878.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dvm:DvMF_2012 cobyrinic acid ac-diamide synthase YP_386879.2 KEGG: dvm:DvMF_2011 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3 YP_386880.1 KEGG: dvm:DvMF_2010 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_386881.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: dvm:DvMF_2009 flagellar basal body-associated protein FliL YP_386882.1 KEGG: dvm:DvMF_2008 hypothetical protein YP_386883.1 KEGG: dvm:DvMF_2007 hypothetical protein YP_386884.1 KEGG: das:Daes_1357 hypothetical protein YP_386885.2 PFAM: tRNA-dihydrouridine synthase; KEGG: dvm:DvMF_2019 dihydrouridine synthase DuS YP_386886.1 TIGRFAM: LytB protein; KEGG: dvm:DvMF_2020 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_386887.1 KEGG: dvu:DVU0056 chemotaxis protein CheV; PFAM: CheW-like protein; Signal transduction response regulator, receiver region; SMART: CheW-like protein; Signal transduction response regulator, receiver region YP_386888.1 KEGG: dma:DMR_26870 hypothetical protein YP_386889.1 KEGG: dsa:Desal_2816 hypothetical protein YP_386890.2 PFAM: Glycosyl transferase, group 1; KEGG: ica:Intca_3044 mannose-6-phosphate isomerase, type 2 YP_386891.1 KEGG: mmw:Mmwyl1_4039 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_386892.1 KEGG: mmw:Mmwyl1_4040 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_386894.1 TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: dvl:Dvul_2624 acetolactate synthase catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central region YP_386895.1 PFAM: Amino acid-binding ACT; KEGG: dvu:DVU0361 acetolactate synthase 1 regulatory subunit YP_386896.1 KEGG: dbr:Deba_0020 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_386897.1 KEGG: dbr:Deba_0021 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_386898.2 KEGG: dbr:Deba_0022 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_386899.1 KEGG: dal:Dalk_3417 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_386900.1 KEGG: dvl:Dvul_3076 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_386903.1 PFAM: sugar-binding region; KEGG: dvm:DvMF_0812 transcriptional regulator, DeoR family YP_386904.1 KEGG: dvm:DvMF_0811 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase YP_386905.1 PFAM: Major intrinsic protein; KEGG: dvl:Dvul_0253 major intrinsic protein YP_386906.1 TIGRFAM: Glycerol kinase; KEGG: dvm:DvMF_0809 glycerol kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal YP_386907.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dvm:DvMF_2222 protein of unknown function DUF214 YP_386908.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_2221 ABC transporter related; SMART: ATPase, AAA+ type, core YP_386909.2 KEGG: dvm:DvMF_2220 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL YP_386910.1 KEGG: dvm:DvMF_2065 YbaK/EbsC protein; TIGRFAM: Conserved hypothetical protein CHP00011; PFAM: YbaK/aminoacyl-tRNA synthetase associated region YP_386911.1 KEGG: gme:Gmet_0448 glycoside hydrolase YP_386912.1 KEGG: dth:DICTH_0482 myo-inositol catabolism protein YP_386913.1 KEGG: ret:RHE_CH01979 diaminobutyrate--pyruvate aminotransferase; PFAM: Aminotransferase class-III YP_386914.1 PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; KEGG: drt:Dret_0619 phosphoribosylglycinamide synthetase YP_386915.1 PFAM: Polysaccharide pyruvyl transferase; KEGG: drt:Dret_0618 hypothetical protein YP_386916.1 PFAM: Methyltransferase type 12; KEGG: shl:Shal_1398 type 12 methyltransferase YP_386917.2 PFAM: Acylneuraminate cytidylyltransferase; KEGG: drt:Dret_0616 acylneuraminate cytidylyltransferase YP_386918.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cja:CJA_0478 acetyltransferase, GNAT family YP_386919.1 PFAM: N-acetylneuraminic acid synthase, N-terminal; KEGG: gme:Gmet_0455 N-acetylneuraminate synthase YP_386921.1 KEGG: gsu:GSU0627 GDP-fucose synthetase; PFAM: NAD-dependent epimerase/dehydratase YP_386922.1 PFAM: Glycosyl transferase, family 2; KEGG: dvm:DvMF_1842 glycosyl transferase 2 YP_386923.1 KEGG: dvu:DVU2996 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_386924.1 PFAM: Glycosyl transferase, group 1; KEGG: dvu:DVU2995 glycosyl transferase group 1 family protein YP_386925.1 PFAM: Methyltransferase type 11; KEGG: drm:Dred_1396 ubiquinone/menaquinone biosynthesis methylase-like protein YP_386926.1 PFAM: Glycosyl transferase, family 2; KEGG: drm:Dred_1399 cell wall biogenesis glycosyltransferase-like protein YP_386927.1 PFAM: CDP-glycerol glycerophosphotransferase; Glycosyl transferase, group 1; Glycosyl transferase, family 2; KEGG: dvu:DVU2993 glycosyl transferase group 1/2 family protein YP_386928.1 TIGRFAM: GDP-mannose 4,6-dehydratase; KEGG: dba:Dbac_3269 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_386930.1 TIGRFAM: Haemerythrin-like, metal-binding; PFAM: Chemotaxis methyl-accepting receptor, signalling; Haemerythrin/HHE cation-binding motif; KEGG: dsa:Desal_1474 methyl-accepting chemotaxis sensory transducer; SMART: Chemotaxis methyl-accepting receptor, signalling YP_386931.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: dvm:DvMF_2972 glycerophosphodiester phosphodiesterase YP_386932.1 KEGG: dsa:Desal_2911 magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like YP_386933.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: stp:Strop_4239 antibiotic biosynthesis monooxygenase YP_386934.1 KEGG: dba:Dbac_0116 UDP-N-acetylglucosamine pyrophosphorylase related protein YP_386935.1 PFAM: CDP-glycerol glycerophosphotransferase; KEGG: dsa:Desal_0581 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_386937.1 PFAM: NADPH-dependent FMN reductase; KEGG: dsa:Desal_0619 NADPH-dependent FMN reductase YP_386940.1 PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; KEGG: dvu:DVU2379 M16 family peptidase YP_386941.1 KEGG: rce:RC1_3838 ABC transporter, ATP binding protein, PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_386942.1 KEGG: cli:Clim_1572 hypothetical protein YP_386943.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dba:Dbac_2599 TonB-dependent receptor plug YP_386944.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: drt:Dret_0180 extracellular solute-binding protein family 5 YP_386945.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: drt:Dret_0179 binding-protein-dependent transport systems inner membrane component YP_386946.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: maq:Maqu_1540 binding-protein-dependent transport systems inner membrane component YP_386947.1 PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: dvu:DVU2387 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_386948.1 KEGG: das:Daes_0573 hypothetical protein YP_386949.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: das:Daes_0574 MotA/TolQ/ExbB proton channel YP_386950.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_0847 biopolymer transport protein YP_386951.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: das:Daes_0576 biopolymer transport protein ExbD/TolR YP_386952.1 TIGRFAM: TonB, C-terminal; KEGG: dps:DP2971 TonB protein YP_386953.2 PFAM: Tetratricopeptide TPR2; KEGG: dbr:Deba_2292 hypothetical protein YP_386954.1 KEGG: dvl:Dvul_0230 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_386955.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: pfo:Pfl01_5282 extracellular solute-binding protein YP_386957.1 KEGG: dsa:Desal_1359 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like YP_386958.1 PFAM: Sulfatase; KEGG: dsa:Desal_1360 sulfatase YP_386959.1 KEGG: dsa:Desal_1361 TrmB family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, GntR; SMART: Cyclic nucleotide-binding YP_386960.1 PFAM: Glutaredoxin; KEGG: dvl:Dvul_2555 glutaredoxin YP_386961.1 KEGG: dsa:Desal_1363 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region YP_386963.1 PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate/ketoisovalerate oxidoreductase; KEGG: dba:Dbac_3081 indolepyruvate ferredoxin oxidoreductase YP_386964.1 KEGG: dba:Dbac_3164 CoA-binding domain-containing protein YP_386969.2 TIGRFAM: Formate dehydrogenase, alpha subunit; KEGG: dps:DP0481 formate dehydrogenase, chain A; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region YP_386970.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: sth:STH3294 electron transport protein YP_386971.1 SMART: Iron hydrogenase, small subunit-like; TIGRFAM: Iron hydrogenase, subset; KEGG: dps:DP0479 Fe-center hydrogenase, large subunit; PFAM: Iron hydrogenase, large subunit, C-terminal; Iron hydrogenase, small subunit-like; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_386972.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: clj:CLJU_c20030 Fe-S-cluster-containing hydrogenase component YP_386973.2 PFAM: Transposase IS200-like; KEGG: yen:YE1694 transposase for IS1541 YP_386975.1 PFAM: Glycosyl transferase, group 1; KEGG: rce:RC1_2537 glycosyl transferase, group 1 family protein YP_386976.1 PFAM: O-antigen ligase-related; KEGG: dvm:DvMF_3018 O-antigen polymerase YP_386977.1 TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; KEGG: cyn:Cyan7425_4214 undecaprenyl-phosphate galactose phosphotransferase, WbaP; PFAM: Bacterial sugar transferase YP_386979.1 KEGG: dsa:Desal_2558 ATPase AAA; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core YP_386980.1 PFAM: Protein of unknown function DUF2201, metallopeptidase-related; KEGG: das:Daes_1896 hypothetical protein YP_386981.1 KEGG: dsa:Desal_2560 hypothetical protein YP_386982.1 KEGG: dma:DMR_p1_00100 transposase for insertion sequence element YP_386983.1 KEGG: dvu:DVU2006 hypothetical protein YP_386985.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dsa:Desal_0106 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase YP_386986.1 KEGG: dsa:Desal_0105 hypothetical protein YP_386987.1 KEGG: dbr:Deba_0548 hypothetical protein YP_386988.1 KEGG: dsa:Desal_0107 hypothetical protein YP_386989.1 KEGG: dap:Dacet_2133 hypothetical protein YP_386990.1 KEGG: dbr:Deba_0551 hypothetical protein YP_386991.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dsa:Desal_0101 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase YP_386992.1 PFAM: Ferrous iron transporter, FeoA subunit; KEGG: dsa:Desal_0100 FeoA family protein YP_386993.1 PFAM: Ferric-uptake regulator; KEGG: das:Daes_1894 ferric-uptake regulator YP_386994.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dsa:Desal_0101 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase YP_386995.1 KEGG: dsa:Desal_0109 hypothetical protein YP_386996.1 TIGRFAM: Addiction module antidote protein, HI1420; KEGG: dvl:Dvul_1443 transcriptional regulator YP_386997.1 KEGG: dvl:Dvul_1444 hypothetical protein; TIGRFAM: Addiction module killer protein, HI1419; PFAM: Protein of unknown function DUF891 YP_386998.1 TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: dvl:Dvul_0229 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: Sugar isomerase (SIS); Glutamine amidotransferase, class-II YP_386999.2 PFAM: HPP; KEGG: dvl:Dvul_0138 HPP family protein+B94 YP_387000.1 TIGRFAM: Ham1-like protein; KEGG: dvu:DVU3154 deoxyribonucleotide triphosphate pyrophosphatase; PFAM: Ham1-like protein YP_387001.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_1700 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif YP_387002.1 TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; KEGG: dvu:DVU3151 tRNA modifying protein; SMART: Elongator protein 3/MiaB/NifB YP_387003.1 KEGG: dvl:Dvul_0235 30S ribosomal protein S1; TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA binding domain YP_387004.2 KEGG: dvl:Dvul_0236 signal peptide peptidase SppA, 36K type; TIGRFAM: Peptidase S49, SppA; PFAM: Peptidase S49 YP_387006.1 TIGRFAM: Glycoside hydrolase, family 77; KEGG: dvm:DvMF_1705 4-alpha-glucanotransferase; PFAM: Glycoside hydrolase, family 77 YP_387007.1 KEGG: dvl:Dvul_0238 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; 6-phosphofructo-2-kinase; SMART: Phosphoglycerate mutase YP_387008.1 KEGG: dvu:DVU0391 hypothetical protein YP_387009.1 KEGG: dvl:Dvul_2542 aminotransferase, class I and II; PFAM: Aminotransferase, class I/II YP_387010.1 KEGG: dvl:Dvul_2541 uracil-DNA glycosylase; TIGRFAM: Uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like YP_387011.2 KEGG: das:Daes_0108 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_387013.1 KEGG: dvm:DvMF_1560 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_387014.1 PFAM: Amidase; KEGG: mxa:MXAN_2852 amidase YP_387015.1 KEGG: dvl:Dvul_2537 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A; Sporulation/cell division region, bacteria YP_387016.1 PFAM: Pyruvate carboxyltransferase; Cache; KEGG: dvm:DvMF_1549 pyruvate carboxyltransferase YP_387017.2 KEGG: dvm:DvMF_1550 hypothetical protein YP_387019.1 KEGG: dvu:DVU0400 hypothetical protein YP_387020.1 KEGG: dvm:DvMF_1552 hypothetical protein YP_387022.1 TIGRFAM: Sulphite reductase, dissimilatory-type alpha subunit; KEGG: dvl:Dvul_2532 sulfite reductase, dissimilatory-type subunit alpha; PFAM: Nitrite/sulphite reductase 4Fe-4S region YP_387023.1 TIGRFAM: Sulphite reductase, dissimilatory-type beta subunit; KEGG: dvl:Dvul_2531 sulfite reductase, dissimilatory-type subunit beta; PFAM: Nitrite/sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like YP_387024.3 PFAM: Dissimilatory sulphite reductase D; KEGG: dvl:Dvul_2530 dissimilatory sulfite reductase B YP_387025.2 TIGRFAM: Cobyrinic acid a,c-diamide synthase CbiA; HAMAP: Cobyrinic acid A,C-diamide synthase; KEGG: dvl:Dvul_2529 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase YP_387026.2 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: sfu:Sfum_0926 hypothetical protein YP_387027.2 KEGG: tpp:TPASS_0993 possible rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A; Sporulation/cell division region, bacteria YP_387028.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; PAS fold; Signal transduction response regulator, receiver region; Diguanylate cyclase, predicted; KEGG: dvm:DvMF_1544 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif; Signal transduction response regulator, receiver region YP_387030.1 PFAM: Integrase, catalytic core; KEGG: dau:Daud_0321 integrase catalytic subunit YP_387032.2 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; KEGG: dvm:DvMF_2374 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004849520.1 PFAM: Protein of unknown function DUF208; KEGG: das:Daes_0177 hypothetical protein YP_387033.1 KEGG: dvl:Dvul_0321 ribonuclease; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain YP_387034.1 KEGG: dvm:DvMF_2377 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_387035.1 PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dvl:Dvul_0323 protein-L-isoaspartate methyltransferase-like protein YP_387036.1 PFAM: AMP-dependent synthetase/ligase; KEGG: dvm:DvMF_2446 phenylacetate-coenzyme A ligase YP_387037.1 KEGG: dma:DMR_16980 hypothetical protein; PFAM: Protein of unknown function DUF399; SMART: PDZ/DHR/GLGF YP_387038.1 SMART: DNA glycosylase/AP lyase, catalytic domain; TIGRFAM: DNA glycosylase/AP lyase; KEGG: dvm:DvMF_2449 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding YP_387039.1 KEGG: dsa:Desal_0044 integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN YP_387040.1 KEGG: dsa:Desal_2870 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_387042.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: dvu:DVU3258 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core YP_387043.1 TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: das:Daes_1194 DNA internalization-like competence protein ComEC/Rec2; SMART: Beta-lactamase-like YP_387044.1 PFAM: Acriflavin resistance protein; KEGG: dsa:Desal_0546 acriflavin resistance protein YP_387045.1 KEGG: dsa:Desal_0545 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_387046.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; KEGG: dvm:DvMF_2454 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_004849521.1 KEGG: gbm:Gbem_3849 hypothetical protein YP_387047.2 TIGRFAM: AP endonuclease, family 1; Exodeoxyribonuclease III xth; KEGG: dvm:DvMF_2456 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase YP_387048.1 KEGG: dvm:DvMF_2457 hypothetical protein YP_387049.1 PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: caa:Caka_0849 transcriptional regulator YP_387050.2 KEGG: dvu:DVU3268 hypothetical protein YP_387051.1 KEGG: dvl:Dvul_0310 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: Hydrogenase maturation factor, HypF-type; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type YP_387052.1 KEGG: dvl:Dvul_0311 cupin 2 domain-containing protein; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_387053.1 KEGG: dvl:Dvul_0312 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase YP_387054.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; KEGG: dvm:DvMF_2249 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; HAMP linker domain YP_387056.1 TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: dvu:DVU3059 signal recognition particle-docking protein FtsY; SMART: ATPase, AAA+ type, core YP_387057.1 KEGG: drt:Dret_0454 cytochrome c family protein YP_387059.1 KEGG: dvm:DvMF_1545 hypothetical protein YP_387060.1 KEGG: dvm:DvMF_1546 hypothetical protein YP_387061.1 PFAM: Glycosyl transferase, family 9; KEGG: dvl:Dvul_2523 glycosyl transferase YP_387062.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: dvl:Dvul_2522 TrkA domain-containing protein YP_387063.1 KEGG: dvu:DVU0413 TrkH family potassium uptake protein; PFAM: Cation transporter YP_387064.1 KEGG: dvm:DvMF_1538 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal YP_387065.2 SMART: Diguanylate cyclase, predicted; TIGRFAM: Diguanylate cyclase, predicted; KEGG: dvm:DvMF_1537 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted YP_387067.1 TIGRFAM: Arginine decarboxylase; KEGG: dvm:DvMF_1536 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_387068.1 PFAM: Saccharopine dehydrogenase; KEGG: dvl:Dvul_2516 saccharopine dehydrogenase YP_387069.1 KEGG: dvm:DvMF_1532 carboxynorspermidine decarboxylase; TIGRFAM: Carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_387070.1 TIGRFAM: agmatinase; KEGG: dvu:DVU0421 agmatinase; PFAM: Ureohydrolase YP_387071.1 KEGG: dvm:DvMF_1208 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_387072.1 PFAM: Protein of unknown function DUF2207, membrane; KEGG: dma:DMR_20450 hypothetical membrane protein YP_387073.1 PFAM: LemA; KEGG: dba:Dbac_2637 LemA family protein YP_387076.1 KEGG: dvl:Dvul_0523 cytochrome c YP_387077.2 PFAM: Soluble ligand binding domain; KEGG: dvl:Dvul_0522 electron transport complex protein RnfC YP_387078.1 KEGG: das:Daes_1338 electron transport complex, RnfABCDGE type subunit D; TIGRFAM: Electron transport complex, RnfD; PFAM: NADH-quinone reductase NQR2/RnfD YP_387079.1 TIGRFAM: Electron transport complex, RnfG; PFAM: FMN-binding; KEGG: dvl:Dvul_0520 FMN-binding domain-containing protein; SMART: FMN-binding YP_387080.1 KEGG: dvl:Dvul_0519 electron transport complex RsxE subunit; TIGRFAM: Electron transport complex, RnfE; PFAM: Electron transport complex, Rnf/Nqr YP_387081.1 KEGG: dba:Dbac_1956 electron transport complex, RnfABCDGE type, A subunit; TIGRFAM: Electron transport complex, RnfA; PFAM: Electron transport complex, Rnf/Nqr YP_387082.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Fe-S cluster; KEGG: dba:Dbac_1955 ferredoxin YP_387083.1 PFAM: ApbE-like lipoprotein; KEGG: dvu:DVU2798 ApbE family protein YP_387085.1 PFAM: UspA; KEGG: dvm:DvMF_1529 UspA domain protein YP_387086.1 KEGG: dvm:DvMF_1528 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_387087.1 KEGG: dvm:DvMF_1527 hypothetical protein YP_387088.1 PFAM: Glycosyl transferase, group 1; KEGG: dap:Dacet_1893 glycosyl transferase group 1 YP_387089.1 PFAM: Glycosyl transferase, group 1; KEGG: dvm:DvMF_3019 glycosyl transferase group 1 YP_387090.1 TIGRFAM: Type 1 secretion, target domain, C-terminal; PFAM: von Willebrand factor, type A; Haemolysin-type calcium-binding region; KEGG: pmy:Pmen_1806 hemolysin-type calcium-binding region; SMART: von Willebrand factor, type A YP_387093.2 PFAM: Protein of unknown function DUF169; KEGG: dvm:DvMF_2193 protein of unknown function DUF169 YP_387094.2 PFAM: Protein of unknown function DUF81; KEGG: dsa:Desal_2371 hypothetical protein YP_387096.1 KEGG: dsa:Desal_2372 hypothetical protein YP_387097.1 TIGRFAM: Phosphonate-binding periplasmic protein; KEGG: dsa:Desal_2373 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_387098.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-4; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_2189 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_387099.1 KEGG: dvm:DvMF_2188 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_387100.1 KEGG: dvm:DvMF_2187 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region YP_387101.1 PFAM: Dual specificity phosphatase, catalytic domain; KEGG: dba:Dbac_1987 dual specificity protein phosphatase YP_387103.1 KEGG: dsa:Desal_0961 hypothetical protein YP_387104.1 PFAM: ABC transporter-like; KEGG: dba:Dbac_2498 ABC transporter related; SMART: ATPase, AAA+ type, core YP_387105.1 PFAM: ABC transporter-like; KEGG: dba:Dbac_2499 ABC transporter related; SMART: ATPase, AAA+ type, core YP_387106.1 PFAM: Bacterial inner-membrane translocator; KEGG: dba:Dbac_2500 inner-membrane translocator YP_387107.1 PFAM: Bacterial inner-membrane translocator; KEGG: dba:Dbac_2501 inner-membrane translocator YP_387108.1 PFAM: Extracellular ligand-binding receptor; KEGG: dvm:DvMF_2607 extracellular ligand-binding receptor YP_387114.1 PFAM: Integrase, catalytic core; KEGG: maq:Maqu_4025 integrase catalytic subunit YP_387116.2 PFAM: Integrase, catalytic core, phage; KEGG: dpr:Despr_0398 integrase YP_387117.2 PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; KEGG: dvu:DVU2953 GntR family transcriptional regulator; SMART: HTH transcriptional regulator, GntR YP_387120.2 PFAM: Integrase, catalytic core; Transposase IS3/IS911; KEGG: gem:GM21_0402 integrase catalytic region YP_387122.1 TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; KEGG: dvm:DvMF_1485 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain YP_387124.1 SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: dak:DaAHT2_0955 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III YP_387125.1 KEGG: dba:Dbac_0554 CBS domain and cyclic nucleotide-regulated nucleotidyltransferase; PFAM: Protein of unknown function DUF294, nucleotidyltransferase ; Cystathionine beta-synthase, core; Cyclic nucleotide-binding; Domain of unknown function DUF294, nucleotidyltransferase substrate-binding; SMART: Cyclic nucleotide-binding; Cystathionine beta-synthase, core YP_387126.1 KEGG: dba:Dbac_0555 Na+/solute symporter; TIGRFAM: Sodium/solute symporter, VC2705 subfamily; PFAM: Sodium/solute symporter YP_387127.1 TIGRFAM: Probable solute:sodium symporter, small subunit; KEGG: dba:Dbac_0556 hypothetical protein YP_387130.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dsa:Desal_3247 TRAP dicarboxylate transporter-DctP subunit YP_387131.1 KEGG: das:Daes_2938 tripartite ATP-independent periplasmic transporter DctQ component YP_387132.1 KEGG: dsa:Desal_3245 TRAP dicarboxylate transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_387133.1 KEGG: mxa:MXAN_4523 lipoprotein YP_387134.1 PFAM: Anti-sigma-28 factor, FlgM; KEGG: dvm:DvMF_2585 anti-sigma-28 factor, FlgM YP_387135.1 KEGG: dvm:DvMF_2586 hypothetical protein YP_387136.1 KEGG: dvm:DvMF_2587 Maf-like protein; TIGRFAM: Maf-like protein; PFAM: Maf-like protein YP_387137.1 PFAM: Phosphatidylglycerophosphatase A; KEGG: dvu:DVU0528 phosphatidylglycerophosphatase YP_387138.1 KEGG: dvm:DvMF_0907 NADH dehydrogenase (ubiquinone); PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region YP_387139.1 KEGG: dap:Dacet_2731 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: Metal-dependent phosphohydrolase, HD region YP_387140.1 TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; Helix-turn-helix, Fis-type; KEGG: dma:DMR_34250 fis family transcriptional regulator; SMART: ATPase, AAA+ type, core; PAS; GAF YP_387141.1 KEGG: dal:Dalk_2637 hypothetical protein YP_387143.1 KEGG: dvl:Dvul_2412 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_387144.1 PFAM: Cysteine-rich region, CCG; KEGG: dvl:Dvul_2410 hypothetical protein YP_387145.1 KEGG: dvl:Dvul_2409 hmc operon protein 5 YP_387146.1 KEGG: dvl:Dvul_2408 hmc operon protein 4 YP_387147.1 PFAM: Polysulphide reductase, NrfD; KEGG: dvm:DvMF_2596 polysulphide reductase NrfD YP_387148.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvu:DVU0535 hmc operon protein 2 YP_387149.2 PFAM: Cytochrome c, class III; KEGG: dvl:Dvul_2405 cytochrome c class III YP_387151.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: dvm:DvMF_2599 xylose isomerase domain protein TIM barrel YP_387152.1 KEGG: dvm:DvMF_1693 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_387153.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvm:DvMF_1693 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_387155.1 TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; Helix-turn-helix, Fis-type; KEGG: dvm:DvMF_1692 PAS modulated sigma54 specific transcriptional regulator, fis family; SMART: ATPase, AAA+ type, core; PAS; PAC motif YP_387157.2 KEGG: neu:NE0256 hypothetical protein YP_004849522.1 KEGG: neu:NE0256 hypothetical protein YP_387161.2 KEGG: bae:BATR1942_16910 transferase hexapeptide repeat containing protein YP_387163.2 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ipa:Isop_3201 endonuclease/exonuclease/phosphatase YP_387164.1 KEGG: das:Daes_2331 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_387165.1 KEGG: cth:Cthe_1449 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_387166.1 PFAM: Acriflavin resistance protein; KEGG: dsa:Desal_0071 acriflavin resistance protein YP_387167.2 KEGG: dsa:Desal_0070 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_387169.1 SMART: ATPase, AAA+ type, core; Cystathionine beta-synthase, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: dvl:Dvul_0956 glycine/betaine ABC transporter ATPase; PFAM: ABC transporter-like; Cystathionine beta-synthase, core YP_387170.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0957 glycine/betaine ABC transporter permease YP_387171.1 PFAM: ABC-type glycine betaine transport system, substrate-binding region; KEGG: dvm:DvMF_1043 substrate-binding region of ABC-type glycine betaine transport system YP_387172.2 PFAM: Protein of unknown function DUF156; KEGG: dsa:Desal_0378 hypothetical protein YP_387173.1 KEGG: das:Daes_3185 TorD-like chaperone YP_387174.1 KEGG: dsa:Desal_0375 rhodanese-like protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_387175.1 KEGG: dsa:Desal_0374 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_387176.1 KEGG: das:Daes_3181 cytochrome b/b6 domain-containing protein YP_387177.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dsa:Desal_0372 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_387178.1 KEGG: dsa:Desal_0371 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; Molybdopterin oxidoreductase Fe4S4 region YP_387179.1 KEGG: dsa:Desal_0370 cytochrome c family protein YP_387181.1 KEGG: das:Daes_0366 formylmethanofuran dehydrogenase subunit E domain-containing protein; PFAM: Formylmethanofuran dehydrogenase, subunit E region; Molybdopterin binding; SMART: Molybdopterin binding YP_387185.1 KEGG: dsa:Desal_3532 hypothetical protein YP_387187.1 PFAM: Integral membrane protein TerC; KEGG: alv:Alvin_2312 integral membrane protein TerC YP_387188.1 KEGG: sfu:Sfum_0648 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_387189.1 PFAM: Divalent ion symporter; Regulator of K+ conductance, C-terminal; KEGG: dat:HRM2_22850 SLC13A transporter family protein (TrkA domain protein) YP_387190.2 KEGG: dal:Dalk_2251 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_387191.1 KEGG: dal:Dalk_2250 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_387192.1 KEGG: dvl:Dvul_2828 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_387193.1 KEGG: dba:Dbac_2039 sigma 54 interacting domain protein; PFAM: RNA polymerase sigma factor 54, interaction; HAMP linker domain; SMART: ATPase, AAA+ type, core; HAMP linker domain YP_387194.1 PFAM: ABC-2 type transporter; KEGG: das:Daes_1391 ABC-2 type transporter YP_387195.1 PFAM: ABC transporter-like; KEGG: das:Daes_1392 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_387196.1 PFAM: Secretion protein HlyD; KEGG: das:Daes_1393 secretion protein HlyD family protein YP_387197.1 KEGG: cbi:CLJ_B2396 xanthine/uracil permease; TIGRFAM: Xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_387198.1 KEGG: cbh:CLC_2131 amidohydrolase domain-containing protein; PFAM: Amidohydrolase 1 YP_387199.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold; HAMP linker domain; KEGG: das:Daes_0927 PAS sensor protein; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS; PAC motif; HAMP linker domain YP_387200.1 TIGRFAM: Methionine sulphoxide reductase B; KEGG: dal:Dalk_4702 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B YP_387202.1 PFAM: Formate dehydrogenase accessory protein; KEGG: dvl:Dvul_2375 formate dehydrogenase formation protein FdhE YP_387203.1 PFAM: Formate dehydrogenase, subunit FdhD; KEGG: dvm:DvMF_1232 formate dehydrogenase accessory protein FdhD YP_387204.1 HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: dvm:DvMF_1231 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein YP_387205.1 TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: dvm:DvMF_1230 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_387206.1 KEGG: dba:Dbac_0976 anti-sigma-factor antagonist; PFAM: Signal transduction response regulator, receiver region; Sulphate transporter/antisigma-factor antagonist STAS; SMART: Signal transduction response regulator, receiver region YP_387207.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvl:Dvul_2370 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_387208.2 PFAM: Extracellular ligand-binding receptor; KEGG: dvm:DvMF_1221 extracellular ligand-binding receptor YP_387209.2 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dvm:DvMF_1220 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_387210.1 KEGG: dvm:DvMF_1219 transposase YP_387213.2 TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; Twin-arginine translocation pathway, signal sequence; KEGG: dvu:DVU0587 formate dehydrogenase subunit alpha, selenocysteine-containing; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence, subgroup; Molydopterin dinucleotide-binding region YP_387214.1 KEGG: dvm:DvMF_1216 formate dehydrogenase, beta subunit YP_387215.2 PFAM: Fe-S cluster; Molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: dvm:DvMF_1215 molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein YP_387216.1 KEGG: das:Daes_0557 anti-anti-sigma factor; TIGRFAM: Anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS YP_387217.1 KEGG: das:Daes_0559 stage II sporulation protein E; PFAM: Sporulation stage II, protein E C-terminal; Cache; HAMP linker domain; SMART: Protein phosphatase 2C-related; HAMP linker domain YP_387218.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: sfu:Sfum_4031 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_387219.1 KEGG: sfu:Sfum_3249 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding YP_387221.1 KEGG: dps:DP2379 hydrogenase; PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_387223.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: dvm:DvMF_1119 sodium/hydrogen exchanger YP_387224.1 PFAM: Oligopeptide transporter OPT superfamily; KEGG: das:Daes_0608 hypothetical protein YP_387225.1 KEGG: das:Daes_0607 hypothetical protein YP_387226.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: das:Daes_0606 hypothetical protein YP_387227.1 PFAM: ABC transporter-like; KEGG: das:Daes_0605 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_387228.1 KEGG: rlg:Rleg_0452 O-methyltransferase 3 YP_387229.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: das:Daes_0604 hypothetical protein YP_387230.1 PFAM: Polysaccharide deacetylase; KEGG: das:Daes_0603 polysaccharide deacetylase YP_387231.1 KEGG: das:Daes_3313 hypothetical protein YP_387232.2 PFAM: Phosphoglycerate mutase; KEGG: das:Daes_3314 phosphoglycerate mutase YP_387233.1 PFAM: Glycosyl transferase, group 1; KEGG: dma:DMR_34950 glycosyltransferase YP_387234.1 PFAM: Glycosyl transferase, group 1; KEGG: das:Daes_0311 group 1 glycosyl transferase YP_387235.1 PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: das:Daes_0310 glycosyltransferase 28 domain-containing protein YP_387236.2 PFAM: Radical SAM; KEGG: das:Daes_0309 radical SAM domain-containing protein YP_387237.2 PFAM: Integrase, catalytic core; KEGG: dau:Daud_0321 integrase catalytic subunit YP_387239.1 KEGG: dvm:DvMF_1210 hypothetical protein YP_387241.2 PFAM: Integrase, catalytic core; KEGG: dau:Daud_0321 integrase catalytic subunit YP_387243.1 KEGG: dvl:Dvul_0525 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_387244.1 KEGG: dba:Dbac_0543 hypothetical protein YP_387245.1 KEGG: dvm:DvMF_1205 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_387246.1 KEGG: dvm:DvMF_1204 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase YP_387247.1 PFAM: Protein of unknown function DUF81; KEGG: dat:HRM2_34990 hypothetical protein YP_387249.1 PFAM: Ferric-uptake regulator; KEGG: dvl:Dvul_2043 ferric uptake regulator family protein YP_387250.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dvm:DvMF_1200 TRAP dicarboxylate transporter-DctP subunit YP_387252.1 KEGG: dma:DMR_p1_00100 transposase for insertion sequence element YP_387253.1 KEGG: dvu:DVU2006 hypothetical protein YP_387254.2 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvu:DVU3061 sensory box histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_387255.1 KEGG: dba:Dbac_0791 ABC transporter solute-binding protein YP_387256.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: pao:Pat9b_4202 inosine/uridine-preferring nucleoside hydrolase YP_387258.1 TIGRFAM: DsrC-like protein; KEGG: dvl:Dvul_0534 DsrC family protein; PFAM: DsrC-like protein YP_387261.1 KEGG: dvm:DvMF_2848 CBS domain containing membrane protein; PFAM: Cystathionine beta-synthase, core; Amino acid-binding ACT; SMART: Cystathionine beta-synthase, core YP_387262.1 KEGG: dvu:DVU2772 hypothetical protein; TIGRFAM: Protein of unknown function DUF111; PFAM: Protein of unknown function DUF111 YP_387264.1 KEGG: dsa:Desal_1754 hypothetical protein YP_387265.1 KEGG: dvm:DvMF_2850 hypothetical protein YP_387266.1 KEGG: das:Daes_0271 hypothetical protein YP_387268.1 KEGG: das:Daes_0270 stage II sporulation protein E; PFAM: Sporulation stage II, protein E C-terminal; HAMP linker domain; SMART: Protein phosphatase 2C-related; HAMP linker domain YP_387269.1 PFAM: Mitochondrial inner membrane translocase complex, subunit Tim44-related; KEGG: dvm:DvMF_2861 import inner membrane translocase subunit Tim44 YP_387270.1 KEGG: dvm:DvMF_2860 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_387275.1 KEGG: gwc:GWCH70_2069 SNF2-related protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal YP_387276.1 KEGG: rsh:Rsph17029_2028 hypothetical protein YP_387277.1 SMART: DNA/RNA helicase, C-terminal; KEGG: ddc:Dd586_2684 helicase domain-containing protein YP_387280.1 PFAM: Phosphoribosyltransferase; KEGG: dvm:DvMF_2857 phosphoribosyltransferase YP_387281.1 PFAM: NADPH-dependent FMN reductase; KEGG: dvm:DvMF_2856 NADPH-dependent FMN reductase YP_387282.1 SMART: Beta-lactamase-like; KEGG: dvm:DvMF_2853 beta-lactamase domain protein YP_387283.1 PFAM: Nitroreductase-like; KEGG: drt:Dret_2187 nitroreductase YP_387284.2 PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; KEGG: dvm:DvMF_2851 diguanylate cyclase and serine/threonine protein kinase with TPR repeats YP_387285.1 KEGG: tin:Tint_0959 5'-nucleotidase; PFAM: 5-nucleotidase YP_387287.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dvl:Dvul_0547 hypothetical protein YP_387288.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsa:Desal_1462 GCN5-related N-acetyltransferase YP_387289.1 KEGG: dba:Dbac_2093 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1 YP_387291.1 KEGG: adn:Alide_0970 hypothetical protein YP_387292.1 PFAM: Protein of unknown function DUF178; KEGG: dvm:DvMF_1190 protein of unknown function DUF178 YP_387293.1 KEGG: dvm:DvMF_1189 radical SAM domain protein; TIGRFAM: FO synthase, subunit 2; PFAM: Radical SAM YP_387294.1 TIGRFAM: FO synthase, subunit 2; PFAM: Radical SAM; KEGG: dvu:DVU2756 radical SAM domain-containing protein; SMART: Elongator protein 3/MiaB/NifB YP_387295.1 KEGG: dvl:Dvul_0552 hypothetical protein YP_387296.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: drt:Dret_1487 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_387297.3 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; KEGG: dvm:DvMF_1177 precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole methylase YP_387298.1 KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_387299.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; Cobalamin (vitamin B12) biosynthesis CbiT, precorrin-6Y methyltransferase-core; KEGG: dvl:Dvul_0558 precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Tetrapyrrole methylase YP_387300.1 PFAM: Cobalamin (vitamin B12) biosynthesis CbiD; KEGG: dvu:DVU2750 cobalamin biosynthesis protein CbiD YP_387301.2 PFAM: DoxX; KEGG: dvm:DvMF_1173 hypothetical protein YP_387302.1 KEGG: dvm:DvMF_1172 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_387303.1 KEGG: dsa:Desal_3495 hypothetical protein YP_387304.1 PFAM: Sodium:dicarboxylate symporter; KEGG: ctc:CTC02307 serine/threonine sodium symporter YP_387305.1 KEGG: dvl:Dvul_1033 endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP YP_387306.1 PFAM: YheO-like; KEGG: dvl:Dvul_1030 YheO domain-containing protein YP_387307.1 PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: bvu:BVU_2073 Xaa-Pro aminopeptidase YP_387308.1 KEGG: dsa:Desal_2658 FdhB2 YP_387309.1 TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; Twin-arginine translocation pathway, signal sequence; KEGG: das:Daes_2804 formate dehydrogenase subunit alpha; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; Twin-arginine translocation pathway, signal sequence, subgroup; Molybdopterin oxidoreductase Fe4S4 region YP_387312.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: glo:Glov_2955 response regulator receiver modulated diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_387313.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Cystathionine beta-synthase, core; KEGG: dar:Daro_3975 GGDEF; SMART: Diguanylate cyclase, predicted; Cystathionine beta-synthase, core; PAS YP_387314.1 PFAM: Type IV pilus assembly PilZ YP_387315.1 PFAM: Patatin; KEGG: dvm:DvMF_0660 patatin YP_387316.1 KEGG: dvm:DvMF_0699 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: ATPase, AAA+ type, core; Signal transduction response regulator, receiver region YP_387317.2 PFAM: Type IV pilus assembly PilZ; KEGG: dvl:Dvul_3074 hypothetical protein YP_387318.2 PFAM: UBA/THIF-type NAD/FAD binding fold; Nitroreductase-like; KEGG: dvm:DvMF_0692 hypothetical protein YP_387319.1 TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_387320.1 KEGG: dvm:DvMF_0695 CAAX prenyl protease-related protein; TIGRFAM: Prenyl protease-related; PFAM: Abortive infection protein YP_387321.1 PFAM: Biotin/lipoyl attachment; KEGG: dvm:DvMF_0696 secretion protein HlyD family protein YP_387322.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_0697 ABC transporter related; SMART: ATPase, AAA+ type, core YP_387323.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dvl:Dvul_3083 hypothetical protein YP_387324.1 KEGG: dvl:Dvul_3073 TPR repeat-containing protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein, PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4 YP_387325.1 KEGG: dvm:DvMF_0690 sugar transferase, PEP-Cterm system associated; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Sugar transferase, PEP-CTERM system associated; PFAM: Bacterial sugar transferase YP_387326.1 KEGG: dvu:DVUA0038 capsular polysaccharide transport protein; TIGRFAM: PEP-CTERM, polysaccharide export protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain YP_387327.1 KEGG: dvl:Dvul_3070 lipopolysaccharide biosynthesis; TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; PFAM: Lipopolysaccharide biosynthesis YP_387328.1 KEGG: dvm:DvMF_0687 exopolysaccharide/PEPCTERM locus tyrosine autokinase YP_387329.1 KEGG: dvl:Dvul_3068 AAA ATPase; TIGRFAM: ATPase, secretion system, PEP-CTERM, predicted; SMART: ATPase, AAA+ type, core YP_387330.1 TIGRFAM: PEP-CTERM, conserved hypothetical protein CHP03016; KEGG: dvm:DvMF_0685 PEP-Cterm system associated protein YP_387332.1 KEGG: gsu:GSU1955 CapK related-protein YP_387333.1 PFAM: Glycosyl transferase, family 2; KEGG: sur:STAUR_7881 glycosyl transferase group 2 family protein YP_387334.1 PFAM: Glycosyl transferase, group 1; KEGG: tgr:Tgr7_2364 glycosyltransferase-like protein YP_387335.1 PFAM: Glycosyl transferase, group 1; Glycosyl transferase, family 2; KEGG: gme:Gmet_2004 glycosyl transferase, group 1 YP_387336.1 KEGG: sus:Acid_6877 fibronectin, type III domain-containing protein YP_387337.1 PFAM: ABC-2 type transporter; KEGG: hau:Haur_1034 ABC-2 type transporter YP_387338.1 PFAM: Asparagine synthase; KEGG: eba:ebA4312 hypothetical protein YP_387339.1 PFAM: Glycosyl transferase, family 2; KEGG: rmr:Rmar_0575 glycosyl transferase 2 YP_387340.1 PFAM: Glycosyl transferase, family 2; KEGG: pab:PAB0772 glycosyl transferase YP_387341.1 PFAM: O-antigen ligase-related; KEGG: gsu:GSU1954 hypothetical protein YP_387342.1 PFAM: Glycosyl transferase, group 1; KEGG: maq:Maqu_1638 glycosyl transferase, group 1 YP_387343.1 KEGG: dvu:DVUA0055 hypothetical protein; TIGRFAM: Exosortase, EpsH; PFAM: Exosortase EpsH-related YP_387344.1 TIGRFAM: Methanolan biosynthesis EpsI; KEGG: gem:GM21_2446 EpsI family protein YP_387345.1 TIGRFAM: Signal transduction histidine kinase, PEP-CTERM system, PFAM: ATP-binding region, ATPase-like; KEGG: dvl:Dvul_3043 integral membrane sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF YP_387346.1 TIGRFAM: Signal transduction response regulator, PEP-CTERM system, PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; KEGG: dvm:DvMF_0670 two component, sigma54 specific, transcriptional regulator, fis family; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_387347.1 PFAM: ABC transporter-like; KEGG: ttr:Tter_2802 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_387353.1 KEGG: gur:Gura_0837 hypothetical protein; TIGRFAM: CRISPR-associated protein, Cas2; PFAM: CRISPR-associated protein, Cas2 YP_387356.1 KEGG: mpl:Mpal_1603 CRISPR-associated protein, CSE3 family; TIGRFAM: CRISPR-associated protein, CT1974; PFAM: CRISPR-associated protein, CT1974 YP_387357.1 KEGG: mpl:Mpal_1604 CRISPR-associated protein Cas5 family; TIGRFAM: CRISPR-associated protein, Cas5e-type; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein, Cas5e-type YP_387358.1 KEGG: mbu:Mbur_0596 CRISPR-associated CSE4 family protein; TIGRFAM: CRISPR-associated protein, CT1975; PFAM: CRISPR-associated protein, CT1975 YP_387359.1 KEGG: mbu:Mbur_0595 hypothetical protein; TIGRFAM: CRISPR-associated protein Cse2; PFAM: CRISPR-associated protein Cse2 YP_387360.1 KEGG: rsc:RCFBP_11058 CRISPR-associated protein, CSE1 family; TIGRFAM: CRISPR-associated protein Cse1; PFAM: CRISPR-associated protein Cse1 YP_387361.1 KEGG: mpl:Mpal_1608 CRISPR-associated helicase Cas3; TIGRFAM: Helicase Cas3, CRISPR-associated, core; SMART: DNA/RNA helicase, C-terminal; Metal-dependent phosphohydrolase, HD region YP_387363.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold; KEGG: atm:ANT_28300 signaling protein; SMART: Diguanylate cyclase, predicted; PAS YP_387364.1 PFAM: Cation/H+ exchanger; KEGG: noc:Noc_0521 sodium/hydrogen exchanger YP_387365.2 PFAM: Integrase, catalytic core; KEGG: swd:Swoo_3827 hypothetical protein YP_387367.1 KEGG: dma:DMR_19500 molybdenum-pterin binding protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1 YP_387368.1 PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: swo:Swol_0117 alginate O-acetyltransferase YP_387369.1 KEGG: abu:Abu_1806 hypothetical protein YP_387372.2 PFAM: Uncharacterized protein family UPF0324, prokaryote; KEGG: dba:Dbac_2656 hypothetical protein YP_387373.1 KEGG: dba:Dbac_2655 hypothetical protein YP_387374.2 KEGG: dba:Dbac_2654 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_387375.1 KEGG: dba:Dbac_2653 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_387376.1 PFAM: Auxin efflux carrier; KEGG: dvl:Dvul_1673 auxin efflux carrier YP_387377.1 PFAM: Glycosyl transferase, group 1; KEGG: dol:Dole_2052 glycosyl transferase group 1 YP_387378.1 KEGG: cvi:CV_0867 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal YP_387380.1 KEGG: dat:HRM2_02360 hypothetical protein YP_387381.1 KEGG: dvm:DvMF_2088 hypothetical protein YP_387382.1 SMART: Diguanylate cyclase, predicted; HAMP linker domain; TIGRFAM: Diguanylate cyclase, predicted; KEGG: dvm:DvMF_1014 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; HAMP linker domain YP_387384.1 PFAM: Protein of unknown function DUF1786, pyruvate format-lyase activating enzyme; KEGG: dvm:DvMF_1152 hypothetical protein YP_387386.1 KEGG: vpa:VP1840 hypothetical protein YP_387387.1 KEGG: dol:Dole_0435 hypothetical protein YP_387388.1 KEGG: dly:Dehly_1699 hypothetical protein YP_387389.1 KEGG: dbr:Deba_1841 LexA family transcriptional regulator; TIGRFAM: Peptidase S24, LexA repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; LexA DNA-binding region YP_387391.1 KEGG: dbr:Deba_1843 bacteriophage-related protein YP_387392.1 KEGG: dly:Dehly_1703 resolvase domain-containing protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_387393.1 KEGG: das:Daes_1578 phage-like protein YP_387395.1 KEGG: sfu:Sfum_3782 hypothetical protein YP_387396.1 TIGRFAM: RNA polymerase sigma-70; KEGG: dbr:Deba_1837 RNA polymerase, sigma-24 subunit, ECF subfamily YP_387397.1 KEGG: sfu:Sfum_3784 hypothetical protein YP_387398.1 KEGG: dly:Dehly_1694 hypothetical protein YP_387399.1 KEGG: sfu:Sfum_3786 hypothetical protein YP_387400.1 PFAM: Protein of unknown function DUF669; KEGG: das:Daes_1590 hypothetical protein YP_387401.2 PFAM: ERCC4 domain; KEGG: dly:Dehly_1691 ERCC4 domain-containing protein YP_387402.1 KEGG: dly:Dehly_1690 UvrD/REP helicase YP_387403.2 PFAM: DNA primase, catalytic core, N-terminal; KEGG: geb:GM18_2979 DNA primase catalytic core domain-containing protein YP_387404.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: geb:GM18_2977 filamentation induced by cAMP protein Fic YP_387406.1 KEGG: geb:GM18_2976 hypothetical protein YP_004849523.1 KEGG: dly:Dehly_1687 hypothetical protein YP_387407.1 KEGG: dbr:Deba_1827 hypothetical protein YP_387408.1 PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: dbr:Deba_1826 integrase YP_387409.1 KEGG: geb:GM18_2972 hypothetical protein YP_387410.2 KEGG: dly:Dehly_1683 hypothetical protein YP_387411.1 KEGG: sfu:Sfum_3799 hypothetical protein YP_387412.1 KEGG: sfu:Sfum_3800 hypothetical protein YP_387413.1 KEGG: dbr:Deba_1821 hypothetical protein YP_387414.2 KEGG: dbr:Deba_1820 hypothetical protein YP_387415.1 KEGG: geb:GM18_2966 phage head morphogenesis protein, SPP1 gp7 family; TIGRFAM: Phage head morphogenesis protein, SPP1 gp7; PFAM: Phage head morphogenesis protein, SPP1 gp7 YP_387416.1 KEGG: sfu:Sfum_3804 hypothetical protein YP_387417.1 KEGG: sfu:Sfum_3805 hypothetical protein YP_387418.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: geb:GM18_2963 adenine-specific DNA-methyltransferase; SMART: Basic-leucine zipper (bZIP) transcription factor YP_387419.1 KEGG: dly:Dehly_1674 hypothetical protein YP_387420.1 KEGG: dbr:Deba_1814 hypothetical protein YP_387421.1 KEGG: dbr:Deba_1813 hypothetical protein YP_387422.1 KEGG: geb:GM18_2959 hypothetical protein YP_387423.1 KEGG: sfu:Sfum_3811 hypothetical protein YP_387424.1 KEGG: das:Daes_1619 hypothetical protein YP_387425.1 KEGG: das:Daes_1620 hypothetical protein YP_387426.1 KEGG: dly:Dehly_1658 hypothetical protein YP_387427.1 KEGG: geb:GM18_2954 phage tail sheath protein YP_387428.1 PFAM: Conserved hypothetical protein CHP02241, phage tail region protein; KEGG: sfu:Sfum_3816 hypothetical protein YP_387429.1 KEGG: dbr:Deba_1799 hypothetical protein YP_387430.1 KEGG: sfu:Sfum_3818 TP901 family phage tail tape measure protein; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region YP_387431.1 KEGG: dly:Dehly_1653 hypothetical protein YP_387432.1 KEGG: dly:Dehly_1652 hypothetical protein YP_387433.1 KEGG: dbr:Deba_1795 hypothetical protein YP_387434.1 KEGG: dly:Dehly_1650 phage protein D-like protein YP_387435.1 PFAM: Peptidase M15A, C-terminal; KEGG: sfu:Sfum_3823 peptidase M15A YP_387436.1 PFAM: Protein of unknown function DUF1353; KEGG: dly:Dehly_1648 hypothetical protein YP_387437.1 KEGG: sfu:Sfum_3825 hypothetical protein YP_387438.1 KEGG: dly:Dehly_1646 hypothetical protein YP_387439.1 KEGG: dly:Dehly_1645 PaaR repeat-containing protein YP_004849524.1 KEGG: dbr:Deba_1788 hypothetical protein YP_387440.2 KEGG: das:Daes_1636 hypothetical protein YP_387441.1 KEGG: sfu:Sfum_3830 hypothetical protein YP_387442.1 PFAM: GPW/gp25; KEGG: das:Daes_1638 gpW/GP25 family protein YP_387443.1 PFAM: Baseplate assembly protein J-like, predicted; KEGG: das:Daes_1639 baseplate J family protein YP_387444.1 KEGG: das:Daes_1640 phage tail protein; TIGRFAM: Phage tail protein; PFAM: Phage tail protein I YP_387445.1 KEGG: sfu:Sfum_3834 hypothetical protein YP_387446.1 KEGG: sfu:Sfum_3835 hypothetical protein YP_004849526.1 KEGG: das:Daes_1643 hypothetical protein YP_387449.1 KEGG: sfu:Sfum_3837 hypothetical protein YP_387450.1 KEGG: dly:Dehly_1635 BNR repeat-containing glycosyl hydrolase YP_387451.1 KEGG: dly:Dehly_1634 hypothetical protein YP_387452.1 KEGG: das:Daes_1647 amidoligase enzyme YP_387453.1 KEGG: sfu:Sfum_3841 hypothetical protein YP_387454.1 KEGG: dly:Dehly_1631 glucosamine 6-phosphate synthetase-like protein YP_387455.1 PFAM: AIG2-like; KEGG: dly:Dehly_1630 AIG2 family protein YP_387456.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dap:Dacet_1489 transcriptional regulator, TetR family YP_387457.1 PFAM: Outer membrane efflux protein; KEGG: sat:SYN_01010 type I secretion outer membrane protein YP_387458.1 KEGG: dau:Daud_2100 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_387459.1 PFAM: Patatin; KEGG: tin:Tint_1838 patatin YP_387461.1 PFAM: Acriflavin resistance protein; KEGG: aco:Amico_0304 acriflavin resistance protein YP_387462.1 KEGG: glo:Glov_2883 metal dependent phosphohydrolase; PFAM: Protein of unknown function DUF1113; Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_387463.1 KEGG: dap:Dacet_1487 CoA-substrate-specific enzyme activase; TIGRFAM: CoA enzyme activase; PFAM: Protein of unknown function DUF2229, CoA enzyme activase; ATPase, BadF/BadG/BcrA/BcrD type YP_387466.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: dol:Dole_0415 filamentation induced by cAMP protein Fic YP_387467.1 PFAM: Protein of unknown function DUF1786, pyruvate format-lyase activating enzyme; KEGG: dvl:Dvul_0572 hypothetical protein YP_387468.1 KEGG: dvl:Dvul_0571 phenylacetate--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_387469.1 PFAM: Protein of unknown function DUF456; KEGG: dsa:Desal_2028 hypothetical protein YP_387470.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: dvl:Dvul_0569 tRNA/rRNA methyltransferase (SpoU) YP_387471.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: das:Daes_1853 pseudouridine synthase YP_387472.2 KEGG: dvl:Dvul_0580 hypothetical protein YP_387473.1 KEGG: sfu:Sfum_1664 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_387474.2 TIGRFAM: 2,3-cyclic-nucleotide 2-phosphodiesterase; HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; K Homology, type 1, subgroup; KEGG: dvm:DvMF_1184 phosphodiesterase; SMART: Metal-dependent phosphohydrolase, HD region; K Homology YP_387475.1 KEGG: dvm:DvMF_1183 hypothetical protein YP_387476.1 KEGG: dvl:Dvul_0587 hypothetical protein YP_387477.1 TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: dvu:DVU2668 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Bacterial transferase hexapeptide repeat YP_387480.1 KEGG: dvm:DvMF_2832 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal YP_387481.1 TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: dvm:DvMF_2831 F0F1 ATP synthase subunit beta; SMART: ATPase, AAA+ type, core YP_387482.1 KEGG: dvl:Dvul_2194 F0F1 ATP synthase subunit gamma; TIGRFAM: ATPase, F1 complex, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit YP_387483.1 KEGG: dvl:Dvul_2193 F0F1 ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal YP_387484.1 TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: dvl:Dvul_2192 F0F1 ATP synthase subunit delta; PFAM: ATPase, F1 complex, OSCP/delta subunit YP_387485.1 TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATP synthase subunit b; KEGG: dvm:DvMF_2827 H+transporting two-sector ATPase B/B' subunit; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_387486.1 PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: dvm:DvMF_2826 H+transporting two-sector ATPase B/B' subunit YP_387487.2 PFAM: Protein of unknown function DUF583; KEGG: dvm:DvMF_2825 protein of unknown function DUF583 YP_387488.1 KEGG: dvl:Dvul_2188 rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein YP_387489.1 TIGRFAM: Penicillin-binding protein 2; KEGG: dvl:Dvul_2187 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_387490.1 KEGG: dvl:Dvul_2186 hypothetical protein YP_387491.1 KEGG: dvl:Dvul_2185 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC YP_387492.1 KEGG: dvm:DvMF_2820 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl YP_387493.2 TIGRFAM: Conserved hypothetical protein CHP01212; PFAM: Radical SAM; KEGG: dvm:DvMF_2819 conserved hypothetical radical SAM protein; SMART: Elongator protein 3/MiaB/NifB YP_387494.1 KEGG: dvm:DvMF_2818 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_387495.2 SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; KEGG: mta:Moth_1809 malto-oligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic region YP_387496.1 KEGG: dvm:DvMF_2817 hypothetical protein YP_387497.2 KEGG: dsa:Desal_3145 hypothetical protein YP_387498.1 TIGRFAM: Peptide methionine sulphoxide reductase MsrA; KEGG: bpt:Bpet1875 methionine sulfoxide reductase A; PFAM: Peptide methionine sulphoxide reductase MsrA YP_387499.2 PFAM: Methionine sulphoxide reductase B; TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Peptide methionine sulfoxide reductase msrB; KEGG: bph:Bphy_7199 methionine-R-sulfoxide reductase YP_387502.1 KEGG: dvm:DvMF_2816 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_387503.1 TIGRFAM: SAICAR synthetase; KEGG: dvm:DvMF_2815 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_387504.1 TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; KEGG: dvm:DvMF_2814 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type YP_387506.1 KEGG: dvm:DvMF_2846 hypothetical protein YP_387507.1 KEGG: dvm:DvMF_2846 hypothetical protein YP_387510.1 TIGRFAM: Excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix motif; UvrB/UvrC protein; KEGG: dvu:DVU0801 excinuclease ABC subunit C; SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1 YP_387511.1 KEGG: met:M446_5170 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_387512.1 KEGG: dvm:DvMF_2843 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_387513.1 KEGG: dvm:DvMF_2842 hypothetical protein YP_387514.1 KEGG: dvm:DvMF_2841 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_387515.1 PFAM: tRNA methyl transferase-like; KEGG: dvm:DvMF_2839 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_387516.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: dvu:DVU0808 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase YP_387517.1 KEGG: dvl:Dvul_2168 glutamyl-tRNA(Gln) amidotransferase, C subunit; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit YP_387518.1 KEGG: dvm:DvMF_2836 hypothetical protein YP_387519.1 KEGG: dvl:Dvul_2166 molecular chaperone DnaK; TIGRFAM: Chaperone DnaK; PFAM: Heat shock protein 70 YP_387520.1 KEGG: mma:MM_0051 hypothetical protein YP_387521.1 PFAM: GrpE nucleotide exchange factor; KEGG: dvm:DvMF_1194 GrpE protein YP_387522.1 KEGG: dvm:DvMF_1195 heat-inducible transcription repressor HrcA; TIGRFAM: Negative regulator of class I heat shock protein; PFAM: Negative regulator of class I heat shock protein YP_387523.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dvl:Dvul_2163 redoxin domain-containing protein YP_387524.1 PFAM: AsmA; KEGG: dvm:DvMF_2863 AsmA family protein YP_387525.1 PFAM: Type IV pilus assembly PilZ; KEGG: gsu:GSU0943 hypothetical protein YP_387526.2 TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: dvl:Dvul_2161 cobyric acid synthase; PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase YP_387527.1 KEGG: dvl:Dvul_0730 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_387528.1 TIGRFAM: Pyruvate kinase; KEGG: dvm:DvMF_0965 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta YP_387529.1 TIGRFAM: MraZ; KEGG: dvl:Dvul_0732 cell division protein MraZ YP_387530.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: dvm:DvMF_0963 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_387531.1 KEGG: dvm:DvMF_0962 hypothetical protein YP_387532.1 PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA; KEGG: dvm:DvMF_0961 peptidoglycan glycosyltransferase; SMART: PASTA YP_387533.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: dvu:DVU2509 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_387534.1 TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; KEGG: dvl:Dvul_0737 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_387535.1 KEGG: dvl:Dvul_0738 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_387536.1 KEGG: dvl:Dvul_0739 UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal YP_387537.1 KEGG: dvm:DvMF_0957 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein YP_387538.1 KEGG: dvu:DVU2504 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: N-acetylglucosaminyltransferase, MurG; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28 YP_387539.1 PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: dvl:Dvul_0742 UDP-N-acetylmuramate--L-alanine ligase YP_387540.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: dvl:Dvul_0743 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal YP_387541.2 PFAM: Polypeptide-transport-associated, FtsQ-type; KEGG: dvm:DvMF_0953 polypeptide-transport-associated domain protein FtsQ-type YP_387542.1 TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; KEGG: dvl:Dvul_0745 cell division protein FtsA; SMART: Cell division protein FtsA domain YP_387543.1 KEGG: dvm:DvMF_0951 cell division protein FtsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain YP_387545.1 KEGG: dvm:DvMF_0947 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_387546.1 KEGG: dsa:Desal_2097 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: DHBP synthase RibB; PFAM: DHBP synthase RibB YP_387547.1 PFAM: Peptidase M48, Ste24p; KEGG: dvm:DvMF_0946 peptidase M48 Ste24p YP_387548.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvm:DvMF_0945 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_387550.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dvu:DVU2492 N-(5'-phosphoribosyl)anthranilate isomerase YP_387551.1 KEGG: dvm:DvMF_0941 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_387553.1 KEGG: dvu:DVU2490 histidinol phosphatase; TIGRFAM: Histidinol phosphate phosphatase, HisJ; PFAM: PHP, C-terminal YP_387554.1 PFAM: Late competence development protein ComFB; KEGG: dvm:DvMF_0939 hypothetical protein YP_387555.1 KEGG: dma:DMR_38850 PhoH-like protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc YP_387556.2 KEGG: dvu:DVU2479 phosphate ABC transporter permease; TIGRFAM: Phosphate transport system permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_387557.1 KEGG: dvl:Dvul_0764 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease PstC; PFAM: Binding-protein-dependent transport systems inner membrane component YP_387558.2 KEGG: dvl:Dvul_0765 phosphate binding protein; TIGRFAM: Phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_387561.1 KEGG: dvl:Dvul_0655 hypothetical protein YP_387565.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: sun:SUN_1205 signal transduction response regulator; SMART: Diguanylate cyclase, predicted YP_387566.2 TIGRFAM: Transaldolase C; HAMAP: transaldolase; KEGG: dsa:Desal_3009 translaldolase; PFAM: Transaldolase YP_387567.2 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_1089 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_387568.1 KEGG: dvl:Dvul_0971 hypothetical protein YP_387569.1 KEGG: hmo:HM1_1653 eal domain protein; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted YP_387570.1 KEGG: dvm:DvMF_0381 L-lactate transport; TIGRFAM: L-lactate permease; PFAM: L-lactate permease YP_387571.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dba:Dbac_2859 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_387572.1 KEGG: dvm:DvMF_0320 formate dehydrogenase; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region YP_387573.1 KEGG: dma:DMR_29870 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_387574.1 KEGG: dma:DMR_41440 chemotaxis protein CheW; PFAM: CheW-like protein; SMART: CheW-like protein YP_387575.1 KEGG: dvl:Dvul_1537 nitrite and sulphite reductase 4Fe-4S region; PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like YP_387577.3 TIGRFAM: Arginine biosynthesis protein ArgJ; KEGG: dvm:DvMF_2872 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; PFAM: Arginine biosynthesis protein ArgJ YP_387578.2 KEGG: dvm:DvMF_2873 preprotein translocase subunit SecA; TIGRFAM: SecA protein; PFAM: SecA DEAD-like; SecA Wing/Scaffold; DNA/RNA helicase, C-terminal; SEC-C motif; SecA preprotein cross-linking region YP_387581.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Cysteine-rich region, CCG; KEGG: dvm:DvMF_2874 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_387582.1 KEGG: mag:amb4194 hypothetical protein YP_387583.1 KEGG: dvu:DVU0827 glycolate oxidase subunit GlcD; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_387584.1 KEGG: dvm:DvMF_2876 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SsrA-binding protein YP_387585.1 TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: dvm:DvMF_2877 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region YP_387586.1 KEGG: dvm:DvMF_2878 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein YP_387587.1 PFAM: Phosphotransferase system, mannose/fructose/sorbose family IID component; KEGG: dvm:DvMF_2879 PTS system mannose/fructose/sorbose family IID component YP_387588.1 KEGG: dvl:Dvul_2149 uroporphyrin-III C/tetrapyrrole methyltransferase; TIGRFAM: Uncharacterized protein family UPF0011; PFAM: Tetrapyrrole methylase YP_387589.1 PFAM: Uncharacterized protein family UPF0102; KEGG: dvm:DvMF_2881 hypothetical protein YP_387590.1 KEGG: dvu:DVU0834 ribonuclease HII; PFAM: Ribonuclease HII/HIII YP_387591.1 KEGG: dvm:DvMF_2883 50S ribosomal protein L19; TIGRFAM: Ribosomal protein L19; PFAM: Ribosomal protein L19 YP_387592.1 TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: dvm:DvMF_2884 tRNA (guanine-N1)-methyltransferase; PFAM: Protein of unknown function DUF2168; tRNA (guanine-N1-)-methyltransferase YP_387593.1 KEGG: dvl:Dvul_2144 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel YP_387594.1 KEGG: dsa:Desal_0196 hypothetical protein YP_387595.1 KEGG: dvl:Dvul_2142 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16 YP_387596.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, M-domain; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: dvm:DvMF_2888 signal recognition particle protein; SMART: ATPase, AAA+ type, core YP_387598.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: dma:DMR_43010 sulfate transporter family protein YP_387599.2 KEGG: dvm:DvMF_2889 aspartate aminotransferase; PFAM: Aminotransferase, class I/II YP_387600.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: dap:Dacet_0115 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein YP_387601.2 KEGG: dvl:Dvul_2139 hypothetical protein YP_387602.1 KEGG: dvm:DvMF_2891 5-enolpyruvylshikimate-3-phosphate synthase-like protein YP_387605.1 KEGG: dvl:Dvul_2137 adenylylsulfate reductase subunit beta; TIGRFAM: Adenylylsulphate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_387606.1 TIGRFAM: Adenylylsulphate reductase, alpha subunit; KEGG: dvl:Dvul_2136 adenylylsulfate reductase subunit alpha YP_387607.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: dvl:Dvul_2135 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_387608.1 PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: dvm:DvMF_2895 methyl-viologen-reducing hydrogenase delta subunit YP_387609.1 KEGG: dvl:Dvul_2133 heterodisulfide reductase, transmembrane subunit YP_387610.1 KEGG: dvl:Dvul_2132 hypothetical protein YP_387611.1 KEGG: dvm:DvMF_2907 hypothetical protein YP_387612.1 KEGG: dvl:Dvul_2123 hypothetical protein; TIGRFAM: Zinc finger/thioredoxin PFAM: Protein of unknown function DUF2143 YP_387613.1 PFAM: Glycosyl transferase, family 2; KEGG: dvu:DVU4019 hypothetical protein YP_387614.1 PFAM: Glycosyl transferase, group 1; KEGG: dvm:DvMF_2910 glycosyl transferase group 1 YP_387615.1 KEGG: dvm:DvMF_2911 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS YP_387616.1 PFAM: Flagellar hook-associated 2, C-terminal; Flagellin hook, IN motif; Flagellar hook-associated protein 2, N-terminal; KEGG: dvm:DvMF_2912 flagellar hook-associated 2 domain protein YP_387617.1 PFAM: Peptidase M22, glycoprotease; KEGG: dvm:DvMF_2913 peptidase M22 glycoprotease YP_387618.1 TIGRFAM: Peptidase M50, membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; KEGG: dvm:DvMF_2914 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF YP_387619.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: dvm:DvMF_2915 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_387620.1 KEGG: dvm:DvMF_2916 aromatic-L-amino-acid decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase YP_387621.1 PFAM: Phosphatidate cytidylyltransferase; KEGG: dvl:Dvul_2114 phosphatidate cytidylyltransferase YP_387622.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Undecaprenyl pyrophosphate synthase; KEGG: dvm:DvMF_2918 undecaprenyl diphosphate synthase YP_387624.1 KEGG: dvm:DvMF_2919 ribosome recycling factor; TIGRFAM: Ribosome recycling factor; PFAM: Ribosome recycling factor YP_387625.1 KEGG: dvm:DvMF_2920 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase YP_387626.1 PFAM: Glycosyl transferase, family 2; KEGG: dvm:DvMF_2921 glycosyl transferase 2 YP_387627.1 KEGG: das:Daes_3071 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_387628.1 KEGG: dvm:DvMF_2923 translation elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal YP_387629.1 KEGG: dvm:DvMF_2924 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2 YP_387631.1 PFAM: Asparagine synthase; KEGG: mag:amb0042 asparagine synthase YP_387632.1 KEGG: das:Daes_2174 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_387633.1 KEGG: dvm:DvMF_2926 beta-lactamase domain protein; PFAM: RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like YP_387634.1 KEGG: dvm:DvMF_2925 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like YP_387636.1 PFAM: MgtC/SapB transporter; KEGG: sfu:Sfum_1155 MgtC/SapB transporter YP_387639.1 KEGG: dvl:Dvul_2198 hypothetical protein YP_387641.1 KEGG: dvl:Dvul_2197 hypothetical protein YP_387642.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dvm:DvMF_1359 protein of unknown function DUF6 transmembrane YP_387643.1 KEGG: dvm:DvMF_1117 heat shock protein 90; PFAM: ATP-binding region, ATPase-like; Heat shock protein Hsp90, C-terminal; SMART: ATP-binding region, ATPase-like YP_387644.1 KEGG: afn:Acfer_0225 biotin and thiamin synthesis associated YP_387645.1 KEGG: dvm:DvMF_1110 hypothetical protein YP_387646.2 PFAM: Rickettsia 17kDa surface antigen; KEGG: dvl:Dvul_0804 hypothetical protein YP_387647.1 KEGG: dvm:DvMF_1513 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_387649.1 KEGG: dvl:Dvul_0621 hypothetical protein YP_387650.1 KEGG: dal:Dalk_1957 hypothetical protein YP_387651.2 KEGG: dvm:DvMF_1091 single-strand binding protein/primosomal replication protein N YP_387652.1 KEGG: dvm:DvMF_1092 hypothetical protein YP_387653.1 KEGG: dvm:DvMF_1093 hypothetical protein YP_387654.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: dvm:DvMF_1094 phage repressor YP_387658.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: hch:HCH_00143 amino acid ABC transporter periplasmic protein YP_387660.1 KEGG: dvl:Dvul_0702 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_387661.1 KEGG: dal:Dalk_0006 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif YP_387662.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-4; PAS fold; KEGG: pca:Pcar_2558 signal transduction protein; SMART: Diguanylate cyclase, predicted; PAS; PAC motif YP_387664.1 KEGG: dvm:DvMF_1083 TPR repeat-containing protein YP_387665.1 KEGG: dvm:DvMF_3031 intracellular protease, PfpI family; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI YP_387666.1 PFAM: NADPH-dependent FMN reductase; KEGG: dvu:DVU0819 FMN reductase, NADPH-dependent YP_387667.1 KEGG: dpr:Despr_1760 PAS/PAC sensor-containing diguanylate cyclase and hemerythrin-like metal-binding domain-containing protein; TIGRFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted YP_387668.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; DNA/RNA helicase, C-terminal; Helicase-associated region; KEGG: rce:RC1_1438 ATP-dependent helicase, SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase-associated region YP_387669.2 PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: tau:Tola_1319 hypothetical protein YP_387670.1 TIGRFAM: Malate synthase G; KEGG: aeh:Mlg_1646 malate synthase G; PFAM: Malate synthase-like, core YP_387671.1 KEGG: rba:RB10458 RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1 YP_387673.2 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: rde:RD1_1003 hypothetical protein YP_387674.1 TIGRFAM: Dihydroxyacetone kinase DhaK, subunit 1; KEGG: dvl:Dvul_2009 dihydroxyacetone kinase subunit DhaK; PFAM: Dak kinase YP_387675.1 KEGG: dvm:DvMF_2583 dihydroxyacetone kinase, L subunit; TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase YP_387676.1 TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; Phosphotransferase system, phosphocarrier HPr protein; Dihydroxyacetone kinase, subunit phosphotransferase; KEGG: dvm:DvMF_2584 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region; Phosphotransferase system, phosphocarrier HPr protein; Phosphotransferase system, fructose subfamily IIA component YP_387677.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: sfu:Sfum_3544 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_387678.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: sfu:Sfum_3545 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_387679.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ddf:DEFDS_2066 peptide/nickel ABC transporter permease YP_387680.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ddf:DEFDS_2067 peptide/nickel ABC transporter permease YP_387681.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ddf:DEFDS_2068 peptide/nickel ABC transporter substrate-binding protein YP_387682.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; KEGG: dvu:DVU2575 M20/M25/M40 family peptidase YP_387684.2 KEGG: das:Daes_1662 CACA family Na+/Ca+ antiporter; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; PFAM: Sodium/calcium exchanger membrane region YP_387685.1 PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: dba:Dbac_3139 hypothetical protein YP_387686.1 PFAM: Cobalamin (vitamin B12) biosynthesis CbiM; KEGG: dba:Dbac_3138 cobalt transport protein CbiM YP_387687.1 KEGG: dba:Dbac_3137 hypothetical protein YP_387688.1 KEGG: dvm:DvMF_3138 cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: Cobalt ABC transporter CbiQ, permease subunit; PFAM: Cobalt transport protein YP_387689.1 KEGG: dba:Dbac_3135 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_387690.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: dvm:DvMF_0301 extracellular solute-binding protein family 3 YP_387691.1 PFAM: Nitroreductase-like; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dba:Dbac_0625 nitroreductase YP_387692.1 PFAM: CheC-like protein; KEGG: das:Daes_0677 CheC domain-containing protein YP_387693.1 KEGG: das:Daes_0046 metal-dependent hydrolase HDOD; PFAM: Metal-dependent hydrolase HDOD; SMART: Metal-dependent phosphohydrolase, HD region YP_387694.1 PFAM: MCP methyltransferase, CheR-type; KEGG: dma:DMR_33460 chemotaxis protein methyltransferase; SMART: MCP methyltransferase, CheR-type YP_387696.1 PFAM: Cyclic nucleotide-binding; KEGG: dsa:Desal_0411 Crp/Fnr family transcriptional regulator YP_387697.1 PFAM: Sulfatase; KEGG: dsa:Desal_0410 sulfatase YP_387698.1 PFAM: Thioredoxin domain; KEGG: dsa:Desal_0409 thioredoxin YP_387699.1 KEGG: dsa:Desal_0408 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region YP_387700.1 PFAM: Sodium/sulphate symporter; KEGG: dsa:Desal_0407 sodium/sulfate symporter YP_387701.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dsa:Desal_0406 hypothetical protein YP_387703.1 KEGG: dsa:Desal_0602 heterodisulfide reductase, C subunit YP_387704.1 KEGG: dba:Dbac_0849 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich region, CCG YP_387705.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: drt:Dret_0196 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_387706.2 PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; KEGG: dba:Dbac_0851 methyl-viologen-reducing hydrogenase delta subunit YP_387707.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; KEGG: drt:Dret_2313 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_387708.1 KEGG: dba:Dbac_0853 hydrogenase YP_387709.1 PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding; KEGG: dsa:Desal_0596 oxidoreductase FAD/NAD(P)-binding domain protein YP_387710.1 PFAM: Rubrerythrin; KEGG: dvl:Dvul_0832 hypothetical protein YP_387711.2 KEGG: aap:NT05HA_1013 HNH nuclease; PFAM: HNH endonuclease; SMART: HNH nuclease YP_387712.1 KEGG: dsa:Desal_1742 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase YP_387713.1 PFAM: YibE/F-like; KEGG: dsa:Desal_1743 YibE/F family protein YP_387714.1 KEGG: dvl:Dvul_2289 ferredoxin-dependent glutamate synthase YP_387718.1 PFAM: Rubrerythrin; KEGG: dvm:DvMF_2367 rubrerythrin YP_387721.1 KEGG: azl:AZL_a06020 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal YP_387724.1 KEGG: dvm:DvMF_0712 hypothetical protein YP_387725.2 KEGG: dvu:DVU1143 hypothetical protein YP_387726.1 PFAM: Bacteriophage CI repressor; KEGG: dal:Dalk_4782 CI repressor YP_387729.2 PFAM: Integrase, catalytic core; Transposase IS3/IS911; KEGG: gem:GM21_0402 integrase catalytic region YP_387737.1 PFAM: Acyltransferase 3; KEGG: tfu:Tfu_1701 hypothetical protein YP_387740.1 KEGG: das:Daes_2494 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_387741.1 PFAM: Protein of unknown function DUF81; KEGG: das:Daes_2492 hypothetical protein YP_387742.1 PFAM: Methyltransferase type 11; KEGG: rpd:RPD_0127 methyltransferase type 12 YP_387743.1 PFAM: Methicillin resistance protein; KEGG: dvu:DVU2294 femAB family protein YP_387744.1 KEGG: dba:Dbac_1597 GreA/GreB family elongation factor YP_387746.1 TIGRFAM: Glutamate synthase (NADPH), homotetrameric; KEGG: dvm:DvMF_0938 oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region YP_387747.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dvl:Dvul_0767 ferredoxin-NADP(+) reductase subunit alpha YP_387748.1 PFAM: Divalent ion symporter; KEGG: mmx:MmarC6_0798 citrate transporter YP_387749.1 PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: dsa:Desal_0725 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) YP_387750.1 TIGRFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: dma:DMR_34310 L-tartrate dehydratase beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate beta region YP_387751.1 TIGRFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; KEGG: dma:DMR_34300 fumarate hydratase; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region YP_387752.1 KEGG: drt:Dret_1067 fumarate reductase iron-sulfur subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein YP_387753.1 TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: dma:DMR_34280 fumarate reductase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_387754.1 PFAM: Fumarate reductase respiratory complex; KEGG: dma:DMR_05760 fumarate reductase cytochrome b subunit YP_387756.1 KEGG: gbm:Gbem_0673 sigma-54-dependent transcriptional response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_387757.2 KEGG: gur:Gura_2707 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Cache, type 2; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_387759.1 PFAM: DSBA oxidoreductase; KEGG: dsa:Desal_3159 DsbA oxidoreductase YP_387760.1 KEGG: cbf:CLI_2945 sigma-54 dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; PAS YP_387761.1 KEGG: ssm:Spirs_2718 endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP YP_387762.1 TIGRFAM: Diaminopropionate ammonia-lyase; Diaminopropionate ammonia-lyase, subgroup; KEGG: ctc:CTC00071 diaminopropionate ammonia-lyase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_387763.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; KEGG: drm:Dred_0260 peptidase YP_387764.1 PFAM: Sodium/solute symporter; KEGG: vpr:Vpar_1797 SSS sodium solute transporter superfamily YP_387765.1 KEGG: drm:Dred_0263 N-acyl-D-amino-acid deacylase; PFAM: D-aminoacylase, C-terminal; Amidohydrolase 3 YP_387766.1 TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; Helix-turn-helix, Fis-type; KEGG: dvu:DVU2827 sigma-54 dependent transcriptional regulator; SMART: ATPase, AAA+ type, core; PAS YP_387768.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Glycyl radical enzyme-activating; KEGG: dvl:Dvul_0490 glycyl-radical activating family protein; PFAM: Radical SAM; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_387769.1 PFAM: Pyruvate formate-lyase, PFL; Formate C-acetyltransferase glycine radical; KEGG: dvu:DVU2824 formate acetyltransferase YP_387770.1 KEGG: dvl:Dvul_0492 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter, DctQ component YP_387771.1 KEGG: dvl:Dvul_0493 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_387774.1 PFAM: Amidohydrolase 2; KEGG: dvl:Dvul_0495 amidohydrolase 2 YP_387775.1 KEGG: dsa:Desal_0036 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-4; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS YP_387777.1 KEGG: dvl:Dvul_0661 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_387779.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dvl:Dvul_0665 TetR family transcriptional regulator YP_387781.1 KEGG: jan:Jann_2988 histidine kinase; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_387782.1 KEGG: dvu:DVU2580 response regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_387784.1 KEGG: dvm:DvMF_1051 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_387785.1 PFAM: Integrase, catalytic core; KEGG: dau:Daud_0321 integrase catalytic subunit YP_387794.2 PFAM: Integrase, catalytic core; Transposase IS3/IS911; KEGG: gem:GM21_0402 integrase catalytic region YP_387796.1 PFAM: DNA methylase N-4/N-6; KEGG: dvu:DVU1098 adenine specific DNA methyltransferase YP_387797.2 KEGG: dvm:DvMF_3036 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane region YP_387798.1 KEGG: dvm:DvMF_3042 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_387799.1 PFAM: Uncharacterized protein family UPF0153; KEGG: dvl:Dvul_1987 hypothetical protein YP_387800.1 SMART: CoA-binding; KEGG: dvl:Dvul_1988 CoA-binding domain-containing protein YP_387801.1 PFAM: Peptidase M24, structural domain; Creatinase; KEGG: dvu:DVU1000 M24 family peptidase YP_387802.1 PFAM: ATPase-like, ParA/MinD; KEGG: drt:Dret_0440 ATPase-like, ParA/MinD YP_387803.1 KEGG: dvl:Dvul_0929 hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like YP_387804.2 PFAM: Hydrogenase nickel incorporation protein HypA/HybF; KEGG: dvl:Dvul_0930 hydrogenase expression/synthesis, HypA YP_387805.2 KEGG: dvm:DvMF_3167 tetratricopeptide TPR_2 repeat protein YP_387806.1 KEGG: dvm:DvMF_3168 hypothetical protein YP_387807.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: sfr:Sfri_2815 redoxin domain-containing protein YP_387808.1 PFAM: Heavy metal transport/detoxification protein; KEGG: dvm:DvMF_3169 heavy metal transport/detoxification protein YP_387809.1 TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; Copper ion-binding; ATPase, P-type, heavy metal translocating; KEGG: dvm:DvMF_3170 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_387810.1 KEGG: dvm:DvMF_3171 hypothetical protein YP_387811.1 KEGG: dvm:DvMF_3172 UTP--glucose-1-phosphate uridylyltransferase; PFAM: UTP--glucose-1-phosphate uridylyltransferase YP_387813.1 KEGG: dvl:Dvul_0944 hypothetical protein; TIGRFAM: Uncharacterized protein family UPF0029, Impact; PFAM: Uncharacterized protein family UPF0029, Impact, N-terminal; Uncharacterized protein family UPF0029, Impact, C-terminal YP_387814.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: dvu:DVU2316 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain YP_387816.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dvm:DvMF_3175 rubrerythrin YP_387818.2 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold; HAMP linker domain; KEGG: dvm:DvMF_1060 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; PAS YP_387819.2 PFAM: Carboxylyase-related; KEGG: dvl:Dvul_0938 carboxylyase-like protein YP_387820.1 KEGG: dvu:DVU2313 6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase YP_387821.1 KEGG: das:Daes_0294 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_387822.1 KEGG: das:Daes_0293 ABC transporter-like protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core YP_387823.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: das:Daes_0292 binding-protein-dependent transporter inner membrane component YP_387824.2 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: das:Daes_0291 binding-protein-dependent transporter inner membrane component YP_387825.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: das:Daes_0290 family 5 extracellular solute-binding protein YP_387827.1 SMART: Beta-lactamase-like; KEGG: dvm:DvMF_3180 beta-lactamase domain protein YP_387829.1 KEGG: dba:Dbac_3458 hypothetical protein YP_387830.2 PFAM: Acyl-ACP thioesterase; KEGG: dvm:DvMF_1428 acyl-ACP thioesterase YP_387831.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dvm:DvMF_2953 protein of unknown function DUF214 YP_387832.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: dvm:DvMF_2954 protein of unknown function DUF214 YP_387833.1 PFAM: Sodium/solute symporter; KEGG: dsa:Desal_1510 Na+/solute symporter YP_387834.1 KEGG: dsa:Desal_1511 hypothetical protein YP_387835.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_2955 ABC transporter related; SMART: ATPase, AAA+ type, core YP_387836.2 KEGG: dvl:Dvul_0795 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_387837.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psa:PST_2698 acetyltransferase YP_387838.1 KEGG: dvm:DvMF_2957 hypothetical protein YP_387839.1 PFAM: Heat shock protein Hsp20; KEGG: dvl:Dvul_0793 heat shock protein HSP20 YP_387840.1 PFAM: Heat shock protein Hsp20; KEGG: dvm:DvMF_2959 heat shock protein HSP20 YP_387841.1 KEGG: dvl:Dvul_0801 hypothetical protein YP_387842.1 KEGG: dvl:Dvul_1097 hypothetical protein YP_387843.1 KEGG: dvl:Dvul_3017 hypothetical protein YP_387845.1 KEGG: dvm:DvMF_2966 hypothetical protein YP_387846.1 KEGG: dvm:DvMF_2967 RarD protein, DMT superfamily transporter; TIGRFAM: RarD protein; PFAM: Protein of unknown function DUF6, transmembrane YP_387847.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-3; KEGG: das:Daes_0343 diguanylate cyclase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS YP_387848.2 PFAM: Helix-turn-helix, HxlR type; KEGG: drt:Dret_0703 transcriptional regulator, HxlR family YP_387849.1 PFAM: Nitroreductase-like; KEGG: dvl:Dvul_0809 nitroreductase YP_387850.1 KEGG: dvm:DvMF_2978 hypothetical protein YP_387851.2 KEGG: dvm:DvMF_2980 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_387852.1 PFAM: SlyX; KEGG: dvm:DvMF_2982 SlyX family protein YP_387853.1 PFAM: Uncharacterized protein family UPF0310; KEGG: dba:Dbac_3203 protein of unknown function DUF55 YP_387854.2 KEGG: dvl:Dvul_0817 hypothetical protein YP_004849529.1 KEGG: dba:Dbac_1387 hypothetical protein YP_387855.1 KEGG: dvm:DvMF_2985 radical SAM domain protein; PFAM: Radical SAM N-terminal; SMART: Elongator protein 3/MiaB/NifB YP_387856.2 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS fold-4; Signal transduction response regulator, receiver region; KEGG: dvu:DVU2412 sensory box histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; GAF; PAS; Signal transduction response regulator, receiver region YP_387857.1 PFAM: Protein of unknown function DUF342; KEGG: das:Daes_0742 hypothetical protein YP_387858.1 KEGG: dvl:Dvul_0821 calcium-binding EF-hand-containing protein YP_387861.2 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: dvu:DVU2376 lysyl-tRNA synthetase YP_387862.1 KEGG: dvm:DvMF_2994 lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted YP_387863.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_2995 ABC transporter related; SMART: ATPase, AAA+ type, core YP_387864.1 KEGG: dvm:DvMF_2996 outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number YP_387866.1 KEGG: dsa:Desal_3576 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic YP_387867.1 PFAM: Outer membrane chaperone Skp (OmpH); KEGG: dvl:Dvul_0893 outer membrane chaperone Skp (OmpH) YP_387868.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: dvl:Dvul_0894 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat YP_387869.1 KEGG: dvl:Dvul_0895 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_387870.1 PFAM: Bacterial transferase hexapeptide repeat; TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: dvm:DvMF_3001 UDP-N-acetylglucosamine acyltransferase YP_387871.2 PFAM: Protein of unknown function DUF1009; KEGG: dvm:DvMF_3002 protein of unknown function DUF1009 YP_004849530.1 KEGG: dvm:DvMF_3003 transcriptional regulator, GntR family; PFAM: Aminotransferase, class I/II YP_004849531.1 KEGG: dvm:DvMF_3003 transcriptional regulator, GntR family YP_387872.1 TIGRFAM: hydroxyethylthiazole kinase; KEGG: dvm:DvMF_3006 hydroxyethylthiazole kinase; PFAM: Hydroxyethylthiazole kinase YP_387873.2 TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine-phosphate pyrophosphorylase; KEGG: dvm:DvMF_3007 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase YP_387874.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dvl:Dvul_1569 hypothetical protein YP_387875.2 PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; KEGG: dvm:DvMF_3009 oxidoreductase FAD/NAD(P)-binding domain protein YP_387876.1 KEGG: dvl:Dvul_2024 Glu/Leu/Phe/Val dehydrogenase, C terminal; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Bacterial NAD-glutamate dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_387878.1 KEGG: dvl:Dvul_2023 hypothetical protein YP_387879.1 KEGG: dvl:Dvul_2022 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_387880.1 KEGG: dvl:Dvul_2021 polar amino acid ABC transporter inner membrane protein; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_387881.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_1342 ABC transporter related; SMART: ATPase, AAA+ type, core YP_387882.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dvl:Dvul_2019 lysine exporter protein LysE/YggA YP_387883.1 KEGG: dvm:DvMF_1340 hypothetical protein YP_387884.2 KEGG: dvu:DVU0971 molybdenum cofactor biosynthesis protein; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding YP_387885.1 KEGG: dvu:DVU0972 HD domain-containing protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_387886.1 KEGG: dvl:Dvul_2015 4-hydroxybenzoate polyprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase related; PFAM: UbiA prenyltransferase YP_387887.1 KEGG: dvl:Dvul_2014 hypothetical protein YP_387889.1 PFAM: Uncharacterized protein family UPF0307; KEGG: dvl:Dvul_2013 hypothetical protein YP_387891.2 PFAM: Integrase, catalytic core; Transposase IS3/IS911; KEGG: dps:DP1714 transposase YP_387894.2 PFAM: Metal-dependent hydrolase HDOD; KEGG: dvu:DVU2357 HD domain-containing protein YP_387895.1 KEGG: dvl:Dvul_1935 aminotransferase, class I and II; PFAM: Aminotransferase, class I/II YP_387896.2 PFAM: Glycosyl transferase, group 1; KEGG: dvm:DvMF_3016 glycosyl transferase group 1 YP_004849532.1 PFAM: Glycosyl transferase, group 1; KEGG: drt:Dret_2032 glycosyl transferase group 1 YP_387898.2 PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: dvu:DVU1062 hypothetical protein YP_387899.1 KEGG: dvm:DvMF_3020 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Signal transduction response regulator, receiver region YP_387900.1 KEGG: dvm:DvMF_3021 aconitate hydratase; TIGRFAM: Aconitase, PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_387901.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; KEGG: dvm:DvMF_3022 PpiC-type peptidyl-prolyl cis-trans isomerase YP_387903.2 KEGG: dvu:DVU0959 replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal YP_387904.1 TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: dvm:DvMF_1352 50S ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal YP_387905.1 KEGG: dvm:DvMF_1351 30S ribosomal protein S18; TIGRFAM: Ribosomal protein S18; PFAM: Ribosomal protein S18 YP_387906.1 KEGG: dvl:Dvul_2030 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like YP_387907.1 PFAM: Organic solvent tolerance protein; OstA-like protein; KEGG: dvm:DvMF_1348 organic solvent tolerance protein YP_387909.1 KEGG: dvm:DvMF_1494 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_387910.1 TIGRFAM: Type 1 secretion, target domain, C-terminal; KEGG: swp:swp_1383 hemolysin-type calcium-binding region YP_387912.2 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system; KEGG: dvm:DvMF_1160 cyclic nucleotide-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region YP_387913.1 KEGG: dvl:Dvul_1976 HlyD family type I secretion membrane fusion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD YP_387914.1 PFAM: Transglutaminase-like cysteine peptidase, predicted; KEGG: dvm:DvMF_1158 transglutaminase cysteine peptidase BTLCP YP_387915.1 TIGRFAM: PAS; PFAM: PAS fold; Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: dvm:DvMF_1157 PAS/PAC sensor protein; SMART: PAS YP_387916.2 PFAM: Glucose-inhibited division protein A-related; TIGRFAM: Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase, TrmFO; HAMAP: Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase trmFO; KEGG: dvm:DvMF_3145 tRNA (uracil-5-)-methyltransferase Gid YP_387917.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: dvm:DvMF_3146 extracellular solute-binding protein family 3 YP_387918.1 TIGRFAM: Alpha-glucan phosphorylase; KEGG: dvm:DvMF_3147 alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35 YP_387919.1 KEGG: dvm:DvMF_3148 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; PFAM: DeoxyUTP pyrophosphatase domain YP_387920.1 TIGRFAM: Acetylornithine/succinylornithine aminotransferase; KEGG: dvu:DVU2347 acetylornithine aminotransferase; PFAM: Aminotransferase class-III YP_387921.1 KEGG: dvm:DvMF_3150 hypothetical protein YP_387922.1 PFAM: ABC transporter-like; KEGG: dvl:Dvul_0916 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_387923.1 KEGG: dvm:DvMF_3152 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_387924.1 KEGG: dvm:DvMF_3153 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_387925.1 KEGG: dvl:Dvul_0919 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_387926.1 PFAM: Ribosomal L11 methyltransferase; KEGG: dvm:DvMF_3155 ribosomal L11 methyltransferase YP_387927.1 PFAM: Glycosyl transferase, family 9; KEGG: dvm:DvMF_3035 glycosyl transferase 9 YP_387929.1 KEGG: dvm:DvMF_3156 HhH-GPD family protein; PFAM: HhH-GPD domain; SMART: HhH-GPD domain; Helix-hairpin-helix DNA-binding motif, class 1 YP_387930.1 PFAM: Peptidase M23; KEGG: dvl:Dvul_0922 peptidase M23B YP_387931.1 TIGRFAM: Peptidase S41A, C-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: dvl:Dvul_0923 carboxyl-terminal protease; SMART: Peptidase S41; PDZ/DHR/GLGF YP_387932.1 PFAM: Protein of unknown function DUF610, YibQ; KEGG: dvu:DVU2335 hypothetical protein YP_387933.1 PFAM: Nucleoside diphosphate kinase, core; KEGG: dvl:Dvul_0925 nucleoside diphosphate kinase; SMART: Nucleoside diphosphate kinase, core YP_387934.1 TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; KEGG: dvm:DvMF_3161 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_387935.1 PFAM: Smr protein/MutS2 C-terminal; KEGG: dvm:DvMF_3162 Smr protein/MutS2 YP_387936.1 KEGG: dvm:DvMF_3163 signal peptide peptidase SppA, 36K type; TIGRFAM: Peptidase S49, SppA; PFAM: Peptidase S49 YP_387937.2 PFAM: Protein of unknown function DUF457, transmembrane; KEGG: dba:Dbac_1809 hypothetical protein YP_387938.1 PFAM: SUF system FeS cluster assembly, SufBD; KEGG: dvm:DvMF_0915 SufBD protein YP_387939.1 KEGG: dvl:Dvul_1972 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_387940.1 PFAM: Peptidase S54, rhomboid; KEGG: dvm:DvMF_0913 rhomboid family protein YP_387941.2 TIGRFAM: Pseudouridine synthase, RluC/RluD; Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; KEGG: dvl:Dvul_1969 RluA family pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4 YP_387942.1 KEGG: dvl:Dvul_1968 uracil phosphoribosyltransferase; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: Phosphoribosyltransferase YP_387943.2 KEGG: dvl:Dvul_1967 uracil-xanthine permease; TIGRFAM: Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease YP_387946.1 TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: dvm:DvMF_0909 cytidylate kinase; PFAM: Cytidylate kinase region YP_387947.1 TIGRFAM: Histidinol-phosphate aminotransferase; KEGG: dvl:Dvul_1964 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II YP_387948.1 PFAM: UspA; KEGG: dvl:Dvul_1963 UspA domain-containing protein YP_387949.1 KEGG: dvl:Dvul_1962 hypothetical protein YP_387951.2 PFAM: Methyltransferase type 11; KEGG: cag:Cagg_2103 methyltransferase type 11 YP_387952.1 KEGG: dba:Dbac_2477 CinA domain protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_387953.1 KEGG: dbr:Deba_0247 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; Cytidine/deoxycytidylate deaminase, zinc-binding region; SMART: Extracellular solute-binding protein, family 3 YP_387954.1 PFAM: Type IV pilus assembly PilZ; KEGG: dma:DMR_18170 hypothetical protein YP_387955.1 KEGG: das:Daes_1428 glucokinase; PFAM: Glucokinase YP_387956.1 PFAM: SNARE associated Golgi protein; KEGG: dal:Dalk_3002 hypothetical protein YP_387957.2 KEGG: dsa:Desal_2458 pyridine nucleotide-disulfide oxidoreductase dimerisation region; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, dimerisation YP_387958.1 KEGG: nhl:Nhal_2875 hypothetical protein YP_387959.1 PFAM: Histidine biosynthesis; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; HAMAP: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; KEGG: dvl:Dvul_1955 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_387960.1 KEGG: dvm:DvMF_3121 lipoprotein YP_387961.1 KEGG: dvl:Dvul_1953 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase YP_387962.1 KEGG: dvm:DvMF_3123 sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase YP_387963.1 KEGG: dvl:Dvul_1951 twin-arginine translocation protein, TatB subunit; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_387964.1 TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; KEGG: dvl:Dvul_1950 GMP synthase; PFAM: GMP synthase, C-terminal; tRNA methyl transferase-like; Glutamine amidotransferase class-I, C-terminal YP_387965.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: dvm:DvMF_3126 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core YP_387967.1 KEGG: dvm:DvMF_3127 tetratricopeptide TPR_2 repeat protein YP_004849533.1 KEGG: dvm:DvMF_3128 hypothetical protein YP_387968.1 PFAM: Cytochrome c assembly protein; KEGG: dvm:DvMF_3129 cytochrome c assembly protein YP_387969.1 PFAM: Cytochrome c-type biogenesis protein CcmB; KEGG: dvm:DvMF_3130 cytochrome c-type biogenesis protein CcmB YP_387970.1 PFAM: ABC transporter-like; KEGG: dvl:Dvul_1944 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_387971.1 PFAM: Cytochrome c assembly protein; KEGG: dvm:DvMF_3132 cytochrome c assembly protein YP_387972.1 KEGG: dvl:Dvul_1942 cytochrome c biogenesis protein CcmE YP_387973.1 PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; KEGG: dvl:Dvul_1941 hypothetical protein YP_387975.2 TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; Histidinol-phosphate phosphatase; KEGG: dvu:DVU1054 HAD superfamily hydrolase YP_387976.1 PFAM: Glycosyl transferase, family 9; KEGG: dvu:DVU1055 heptosyltransferase YP_387977.1 KEGG: dvm:DvMF_3140 citrate transporter YP_387978.1 KEGG: dvl:Dvul_0906 tRNA guanosine-2'-O-methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU YP_387979.2 PFAM: Glycosyl transferase, family 2; KEGG: dvm:DvMF_3142 glycosyl transferase 2 YP_387980.2 PFAM: Glycosyl transferase, family 2; KEGG: dvm:DvMF_3143 glycosyl transferase 2 YP_387981.2 PFAM: Glycosyl transferase, family 2; KEGG: dvm:DvMF_3144 glycosyl transferase 2 YP_387982.1 KEGG: dsa:Desal_1779 RNA methylase; PFAM: RNA methylase YP_387983.1 KEGG: dvl:Dvul_2001 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase YP_387984.1 PFAM: Divalent ion tolerance protein, CutA1; KEGG: dvm:DvMF_2936 CutA1 divalent ion tolerance protein YP_387985.1 SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; TIGRFAM: Endonuclease III/Nth; KEGG: dvm:DvMF_2937 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif YP_387986.1 KEGG: dvl:Dvul_1998 hypothetical protein YP_387987.1 KEGG: dvm:DvMF_2939 response regulator receiver modulated CheW protein; PFAM: CheW-like protein; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; CheW-like protein YP_387988.1 KEGG: fbl:Fbal_2105 chloramphenicol acetyltransferase YP_387989.1 KEGG: dvm:DvMF_1913 hypothetical protein YP_387990.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: dvl:Dvul_0786 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_387991.1 PFAM: Protein of unknown function DUF502; KEGG: hna:Hneap_0474 protein of unknown function DUF502 YP_387992.1 KEGG: dvm:DvMF_2942 pantoate--beta-alanine ligase; TIGRFAM: Pantoate-beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_387993.1 KEGG: dvm:DvMF_2943 hypothetical protein YP_387994.1 TIGRFAM: Ketopantoate hydroxymethyltransferase; KEGG: dvl:Dvul_0789 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_387995.1 PFAM: Flagellin, N-terminal; Flagellin, C-terminal; KEGG: dvl:Dvul_0790 flagellin domain-containing protein YP_387996.1 PFAM: Flagellin, N-terminal; Flagellin, C-terminal; KEGG: dvl:Dvul_0790 flagellin domain-containing protein YP_387997.1 PFAM: Uncharacterized conserved protein UCP020606; KEGG: dvl:Dvul_0791 hypothetical protein YP_387998.1 KEGG: dvl:Dvul_0799 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_388000.1 HAMAP: Xanthine phosphoribosyltransferase; KEGG: dvm:DvMF_3025 xanthine-guanine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_388001.1 PFAM: Basic membrane lipoprotein; KEGG: dvl:Dvul_1927 basic membrane lipoprotein YP_388002.1 PFAM: Bacterial inner-membrane translocator; KEGG: dvl:Dvul_1926 inner-membrane translocator YP_388003.1 PFAM: Bacterial inner-membrane translocator; KEGG: dvm:DvMF_3028 inner-membrane translocator YP_388004.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_3029 ABC transporter related; SMART: ATPase, AAA+ type, core YP_388005.1 KEGG: dol:Dole_0974 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_388006.1 TIGRFAM: Regulatory protein, FmdB, PFAM: Regulatory protein, FmdB, KEGG: das:Daes_2834 regulatory protein, FmdB family; SMART: Regulatory protein, FmdB YP_388007.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: dvm:DvMF_0055 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular YP_388008.1 TIGRFAM: Dihydropteroate synthase; KEGG: dvu:DVU1279 dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS YP_388009.1 KEGG: dvm:DvMF_0057 protein of unknown function DUF147; TIGRFAM: Conserved hypothetical protein CHP00159; PFAM: DNA integrity scanning protein, DisA, N-terminal YP_388010.1 PFAM: YbbR-like; KEGG: dvm:DvMF_0058 YbbR family protein YP_388011.1 TIGRFAM: Phosphoglucosamine mutase; KEGG: dvm:DvMF_0059 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_388012.1 TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: dvl:Dvul_1782 UTP-glucose-1-phosphate uridylyltransferase GalU; PFAM: Nucleotidyl transferase YP_388013.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG: dvm:DvMF_0061 primosomal protein N'; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_388014.1 KEGG: dvm:DvMF_0062 hypothetical protein YP_388015.1 KEGG: dvl:Dvul_1780 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_388016.1 KEGG: dvm:DvMF_0064 histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like YP_388018.1 PFAM: Integrase, catalytic core; KEGG: dau:Daud_0321 integrase catalytic subunit YP_388020.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: dvm:DvMF_0834 tRNA/rRNA methyltransferase (SpoU) YP_388021.1 KEGG: dvl:Dvul_1005 cobalamin biosynthesis protein CobD; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiB; PFAM: Cobalamin (vitamin B12) biosynthesis CbiB YP_388022.1 KEGG: dvu:DVU2234 hypothetical protein; TIGRFAM: HI0933-like protein; PFAM: HI0933-like protein YP_388023.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: dvm:DvMF_0829 alpha/beta hydrolase fold protein YP_388024.1 KEGG: dvm:DvMF_0828 hypothetical protein YP_388025.1 KEGG: dvl:Dvul_1010 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_388026.1 PFAM: Protein of unknown function DUF342; KEGG: dsa:Desal_0248 hypothetical protein YP_388029.1 TIGRFAM: Inosine guanosine/xanthosine phosphorylase; KEGG: dvm:DvMF_0821 purine nucleoside phosphorylase; PFAM: Nucleoside phosphorylase YP_388030.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dvl:Dvul_1012 MotA/TolQ/ExbB proton channel YP_388031.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dvm:DvMF_0819 OmpA/MotB domain protein YP_388032.1 PFAM: Type IV pilus assembly PilZ; KEGG: dvl:Dvul_1014 type IV pilus assembly PilZ YP_388033.1 KEGG: dvm:DvMF_0817 biotin carboxylase; PFAM: Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal YP_388034.1 KEGG: dvm:DvMF_0816 acetyl-CoA carboxylase; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region YP_388035.1 KEGG: dvm:DvMF_0815 hypothetical protein YP_388036.1 KEGG: dvm:DvMF_0814 hypothetical protein YP_388037.1 KEGG: dvm:DvMF_0813 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_388038.1 KEGG: bpa:BPP4398 transcriptional regulator; PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; SMART: Transcriptional regulator IclR, N-terminal YP_388039.1 PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: dsa:Desal_3305 alanine racemase YP_388040.1 KEGG: ant:Arnit_0951 family 7 extracellular solute-binding protein; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria YP_388041.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ant:Arnit_0952 tripartite ATP-independent periplasmic transporter subunit DctQ YP_388042.1 KEGG: ant:Arnit_0953 TRAP dicarboxylate transporter subunit DctM; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_388043.1 PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; KEGG: ant:Arnit_0954 peptidase M15D VanX D-ala-D-ala dipeptidase YP_388044.1 TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold-4; Amino acid-binding ACT; Helix-turn-helix, Fis-type; KEGG: dvm:DvMF_2153 PAS modulated sigma54 specific transcriptional regulator, fis family; SMART: ATPase, AAA+ type, core; PAS YP_388045.1 TIGRFAM: Alanine dehydrogenase/pyridine nucleotide transhydrogenase; KEGG: dvu:DVU0571 alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal YP_388046.2 KEGG: dvm:DvMF_0801 thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS YP_388047.1 PFAM: Thiazole biosynthesis; KEGG: dvu:DVU2094 thiazole synthase YP_388048.2 KEGG: dsa:Desal_2649 thiamine biosynthesis protein ThiH; TIGRFAM: Thiazole biosynthesis ThiH; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM YP_388049.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: dvm:DvMF_0798 thiamine biosynthesis protein ThiF YP_388050.1 KEGG: dvm:DvMF_0797 thiamine-phosphate pyrophosphorylase; TIGRFAM: Thiamine monophosphate synthase; PFAM: Thiamine monophosphate synthase YP_388051.1 KEGG: rhi:NGR_c27290 hypothetical protein YP_388052.1 PFAM: HTH transcriptional regulator, MarR; KEGG: rle:RL3156 MarR family transcriptional regulatory protein YP_388053.2 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: das:Daes_0017 regulatory protein TetR YP_388054.1 TIGRFAM: Secretion protein HlyD; KEGG: dsa:Desal_3803 efflux transporter RND family, MFP subunit YP_388055.1 PFAM: Acriflavin resistance protein; KEGG: dsa:Desal_3804 acriflavin resistance protein YP_388056.1 KEGG: dvm:DvMF_0789 non-specific serine/threonine protein kinase; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; Zinc finger, SWIM-type; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_388057.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dvm:DvMF_0788 extracellular solute-binding protein family 5 YP_388058.1 KEGG: dvu:DVU2006 hypothetical protein YP_388059.1 KEGG: dma:DMR_p1_00100 transposase for insertion sequence element YP_388060.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dvm:DvMF_0788 extracellular solute-binding protein family 5 YP_388061.1 SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: RelA/SpoT protein; KEGG: dvm:DvMF_0787 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; TGS; Amino acid-binding ACT; Metal-dependent phosphohydrolase, HD region, subdomain YP_388062.1 PFAM: Flagellin, N-terminal; Flagellin, C-terminal; KEGG: dvm:DvMF_2950 flagellin domain protein YP_388063.1 HAMAP: Chemotaxis response regulator protein-glutamate methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver region; KEGG: dvl:Dvul_1150 response regulator receiver modulated CheB methylesterase; SMART: Signal transduction response regulator, receiver region YP_388064.1 KEGG: dvm:DvMF_0779 PBS lyase heat domain protein repeat-containing protein YP_388065.1 PFAM: MCP methyltransferase, CheR-type; KEGG: dvm:DvMF_0778 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type YP_388066.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dvl:Dvul_1153 cobyrinic acid a,c-diamide synthase YP_388067.1 KEGG: dvl:Dvul_1154 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_388068.1 KEGG: dvl:Dvul_1155 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_388069.1 KEGG: dvm:DvMF_0774 CheA signal transduction histidine kinase; PFAM: CheW-like protein; ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup, homodimeric; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) region; ATP-binding region, ATPase-like YP_388071.1 KEGG: dvu:DVU2071 hypothetical protein YP_388072.1 KEGG: dsa:Desal_2722 tol-pal system protein YbgF; TIGRFAM: Tol-Pal system, YbgF; PFAM: Tetratricopeptide TPR2 YP_388073.1 KEGG: das:Daes_1865 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A YP_388074.1 KEGG: dvm:DvMF_0770 hypothetical protein YP_388075.1 KEGG: dvm:DvMF_0769 metal dependent phosphohydrolase; TIGRFAM: HDIG; PFAM: Metal-dependent hydrolase HDOD YP_388076.1 KEGG: das:Daes_1862 diguanylate cyclase; PFAM: Signal transduction response regulator, receiver region; Diguanylate cyclase, predicted; SMART: Signal transduction response regulator, receiver region YP_388077.1 PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: dvm:DvMF_0767 integrase YP_388078.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: dvm:DvMF_0766 2-nitropropane dioxygenase NPD YP_388079.1 KEGG: dvl:Dvul_1165 hypothetical protein YP_388080.1 PFAM: DNA helicase, UvrD/REP type; KEGG: dvm:DvMF_0764 UvrD/REP helicase YP_388081.1 KEGG: dvm:DvMF_0763 diphosphate--fructose-6-phosphate 1-phosphotransferase; PFAM: Phosphofructokinase YP_388082.1 PFAM: Glycosyl transferase, family 2; KEGG: dvl:Dvul_1168 glycosyl transferase YP_388083.1 KEGG: dvl:Dvul_1169 metal dependent phosphohydrolase; TIGRFAM: HDIG; SMART: Metal-dependent phosphohydrolase, HD region YP_388085.1 PFAM: PSP1, C-terminal; KEGG: dvl:Dvul_1170 PSP1 domain-containing protein YP_388086.1 PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; HAMAP: Methionyl-tRNA synthetase; KEGG: dvm:DvMF_0759 methionyl-tRNA synthetase YP_388087.1 PFAM: SNARE associated Golgi protein; KEGG: dvu:DVU2053 hypothetical protein YP_388088.1 PFAM: Glycosyl transferase, family 2; KEGG: dvl:Dvul_1174 glycosyl transferase YP_388090.1 PFAM: GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; KEGG: sat:SYN_02208 Fe2+ transport system protein B YP_388091.1 KEGG: tko:TK0715 iron(II) transport protein A; PFAM: Ferrous iron transporter, FeoA subunit; SMART: Ferrous iron transporter, FeoA subunit YP_388092.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dbr:Deba_1127 TonB-dependent receptor YP_388093.1 PFAM: ABC transporter-like; KEGG: cts:Ctha_0998 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_388094.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: gvi:gll0322 HlyB/MsbA family ABC transporter; SMART: ATPase, AAA+ type, core YP_388095.1 KEGG: cce:Ccel_3258 hypothetical protein YP_388096.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: msl:Msil_3806 4'-phosphopantetheinyl transferase YP_388097.2 KEGG: cyh:Cyan8802_3104 oleoyl-(acyl-carrier-protein) hydrolase; PFAM: Thioesterase YP_388098.1 KEGG: dvu:DVU2006 hypothetical protein YP_388099.1 KEGG: dma:DMR_p1_00100 transposase for insertion sequence element YP_388100.1 TIGRFAM: Amino acid adenylation; KEGG: ant:Arnit_2213 amino acid adenylation domain-containing protein; PFAM: AMP-dependent synthetase/ligase; Beta-ketoacyl synthase, C-terminal; Condensation domain; Beta-ketoacyl synthase, N-terminal; Short-chain dehydrogenase/reductase SDR; Phosphopantetheine-binding; Methyltransferase type 12; Acyl transferase; Non-ribosomal peptide synthetase YP_388101.1 SMART: Polyketide synthase, beta-ketoacyl synthase region; TIGRFAM: Amino acid adenylation; KEGG: dae:Dtox_2675 amino acid adenylation domain-containing protein; PFAM: AMP-dependent synthetase/ligase; Beta-ketoacyl synthase, C-terminal; Condensation domain; Beta-ketoacyl synthase, N-terminal; Phosphopantetheine-binding; Acyl transferase; Non-ribosomal peptide synthetase YP_388103.1 KEGG: gvi:gll0324 AraC family transcription regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_388104.1 KEGG: dvu:DVU2801 hypothetical protein YP_388106.1 KEGG: dvl:Dvul_0512 regulatory protein GntR, HTH; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR YP_004849536.1 KEGG: dvl:Dvul_0511 hypothetical protein YP_388107.1 KEGG: dvl:Dvul_0510 amino acid transporter, AAT family YP_388108.1 KEGG: dvl:Dvul_0509 metallo-beta-lactamase YP_388109.2 PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; KEGG: dvu:DVU2805 P47K family cobalamin synthesis protein YP_388110.1 PFAM: Flavodoxin-like fold; KEGG: dvu:DVU3135 flavodoxin-like fold domain-containing protein YP_388111.1 PFAM: Protein of unknown function DUF1566; KEGG: dba:Dbac_0168 protein of unknown function DUF1566 YP_388112.1 PFAM: Peptidase C26; KEGG: aeh:Mlg_2749 peptidase C26 YP_388113.2 KEGG: tgr:Tgr7_3160 hypothetical protein YP_388114.1 PFAM: Periplasmic binding protein; KEGG: das:Daes_0890 periplasmic-binding protein YP_388115.1 PFAM: Bacterial transport system permease; KEGG: das:Daes_0889 transporter permease YP_388116.1 PFAM: ABC transporter-like; KEGG: das:Daes_0888 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_388117.1 PFAM: Formylmethanofuran dehydrogenase, subunit E region; KEGG: das:Daes_0887 formylmethanofuran dehydrogenase subunit E domain-containing protein YP_388119.1 KEGG: dvm:DvMF_0621 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_388120.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Cystathionine beta-synthase, core; Diguanylate cyclase, predicted; KEGG: dvm:DvMF_0617 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Cystathionine beta-synthase, core YP_388121.1 PFAM: Glycosyl transferase, family 9; KEGG: dvu:DVU1956 heptosyltransferase YP_388122.2 PFAM: Tetratricopeptide TPR-1; KEGG: dvm:DvMF_0614 tetratricopeptide domain protein YP_388123.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; PAS fold; KEGG: das:Daes_1286 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; PAS; PAC motif; Signal transduction response regulator, receiver region YP_388124.1 TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; KEGG: dvm:DvMF_0613 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase YP_388125.1 TIGRFAM: Gamma-glutamyl phosphate reductase GPR; KEGG: dvl:Dvul_1215 gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase YP_388126.1 KEGG: dvm:DvMF_0611 hypothetical protein YP_388127.2 KEGG: dvl:Dvul_1219 NifA family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; GAF YP_388128.1 KEGG: dvl:Dvul_1220 hypothetical protein YP_388129.1 KEGG: dvl:Dvul_1221 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: Pyruvate/ketoisovalerate oxidoreductase YP_388130.1 KEGG: dvl:Dvul_1222 2-oxoglutarate ferredoxin oxidoreductase subunit beta; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_388131.1 KEGG: dvm:DvMF_0603 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal YP_004849537.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_1224 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_388133.1 KEGG: atm:ANT_05220 gamma-glutamyltranspeptidase; PFAM: Gamma-glutamyltranspeptidase YP_388134.2 KEGG: dvl:Dvul_1225 hypothetical protein YP_388135.1 KEGG: drt:Dret_0552 hypothetical protein YP_388136.1 KEGG: dvm:DvMF_0600 DegV family protein; TIGRFAM: DegV; PFAM: Dak phosphatase; DegV YP_388138.1 KEGG: dvm:DvMF_0594 intracellular protease, PfpI family; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI YP_388139.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dvm:DvMF_0592 major facilitator superfamily MFS_1 YP_388140.1 PFAM: Integrase, catalytic core; KEGG: dau:Daud_0321 integrase catalytic subunit YP_004849538.1 KEGG: dvm:DvMF_0591 hypothetical protein YP_388142.2 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold; HAMP linker domain; KEGG: dvu:DVU1884 methyl-accepting chemotaxis protein; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_388143.1 KEGG: das:Daes_1250 hypothetical protein; TIGRFAM: Uncharacterized protein family UPF0054; PFAM: Uncharacterized protein family UPF0054 YP_388144.1 TIGRFAM: HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Metal-dependent phosphohydrolase, 7TM intracellular region; KEGG: dvm:DvMF_0576 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD region YP_388145.1 PFAM: PhoH-like protein; KEGG: dvm:DvMF_0575 PhoH family protein YP_388146.1 KEGG: dvm:DvMF_0574 hypothetical protein YP_388148.1 PFAM: Glycosyl transferase, group 1; KEGG: dvm:DvMF_0573 glycosyl transferase group 1 YP_388149.1 KEGG: dvm:DvMF_0572 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_388150.1 PFAM: Polysaccharide deacetylase; KEGG: dvm:DvMF_0570 polysaccharide deacetylase YP_388151.1 KEGG: dvm:DvMF_0569 chaperone DnaJ domain protein; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal YP_388152.1 KEGG: dvm:DvMF_0568 hypothetical protein YP_388153.1 TIGRFAM: Chaperonin ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: dvm:DvMF_0567 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core YP_388154.1 KEGG: das:Daes_2978 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_388155.1 KEGG: dvu:DVU1871 aspartate ammonia-lyase; PFAM: Fumarate lyase; Fumarase C, C-terminal YP_388156.1 PFAM: cyclase; KEGG: dvm:DvMF_0564 cyclase YP_388157.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold; HAMP linker domain; Cache; KEGG: dvm:DvMF_0563 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS; HAMP linker domain YP_388159.1 PFAM: Tetratricopeptide TPR-1; KEGG: dvm:DvMF_2326 TPR repeat-containing protein YP_388160.1 KEGG: cli:Clim_2078 multi-sensor hybrid histidine kinase; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_388161.1 PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: dvl:Dvul_1671 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_388162.1 KEGG: drt:Dret_0731 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_388164.1 TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: dvl:Dvul_1668 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein YP_388165.2 PFAM: Integrase, catalytic core; KEGG: swd:Swoo_3827 hypothetical protein YP_388168.1 KEGG: dvu:DVU1407 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_388169.1 KEGG: dvm:DvMF_0204 hypothetical protein YP_388170.1 KEGG: dvl:Dvul_1665 hypothetical protein YP_388171.2 KEGG: dvl:Dvul_1664 hypothetical protein YP_388172.1 KEGG: dvl:Dvul_1663 thiamine biosynthesis protein ThiC; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC YP_388173.1 KEGG: dvl:Dvul_1662 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_388174.2 PFAM: AsmA; KEGG: dvm:DvMF_0212 hypothetical protein YP_388176.1 KEGG: dvm:DvMF_0213 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_388177.1 KEGG: dvl:Dvul_1657 Fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_388178.1 PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: dvm:DvMF_0217 Hpt protein YP_388179.1 KEGG: dvm:DvMF_0218 hypothetical protein YP_388180.1 KEGG: dvm:DvMF_0220 hypothetical protein YP_388181.1 KEGG: dvl:Dvul_1654 OmpA/MotB domain-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SMART: von Willebrand factor, type A YP_388182.1 KEGG: dvl:Dvul_1653 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulfide oxidoreductase, dimerisation YP_388183.1 PFAM: Glycine cleavage system P-protein, N-terminal; KEGG: dvm:DvMF_0223 glycine dehydrogenase subunit 2 YP_388184.1 KEGG: dvu:DVU1425 glycine dehydrogenase subunit 1; PFAM: Glycine cleavage system P-protein, N-terminal YP_388185.1 KEGG: dvl:Dvul_1650 glycine cleavage system protein H; TIGRFAM: Glycine cleavage H-protein, subgroup; PFAM: Glycine cleavage H-protein YP_388186.1 KEGG: dvm:DvMF_0226 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_388187.1 TIGRFAM: Phosphoglucomutase, alpha-D-glucose specific; KEGG: dvm:DvMF_0227 phosphoglucomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, C-terminal YP_388188.1 KEGG: dvm:DvMF_2247 channel protein, hemolysin III family; TIGRFAM: HylII; PFAM: Hly-III related YP_388189.1 KEGG: dma:DMR_25470 two-component hybrid sensor and regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_388190.1 KEGG: dvm:DvMF_0234 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related YP_388191.1 KEGG: dvl:Dvul_1646 peptidase M16 domain-containing protein; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal YP_388192.2 KEGG: dvm:DvMF_0237 CheA signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_388193.1 KEGG: dvl:Dvul_1644 radical SAM domain-containing protein; PFAM: Protein of unknown function DUF2344; Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_388194.1 KEGG: dvl:Dvul_1643 hypothetical protein YP_388195.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dvu:DVU1435 hypothetical protein YP_388197.1 PFAM: DRTGG; KEGG: dvm:DvMF_0242 DRTGG domain protein YP_388200.1 SMART: Ribonuclease III; Double-stranded RNA binding; TIGRFAM: Ribonuclease III, bacterial; KEGG: dvm:DvMF_0243 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA binding YP_388201.1 PFAM: Flagellin, N-terminal; Flagellin, C-terminal; KEGG: dvm:DvMF_0244 flagellin domain protein YP_388202.1 KEGG: dvl:Dvul_1637 flagellin FlaG YP_388203.2 KEGG: dvm:DvMF_0246 protein of unknown function DUF1078 domain protein; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; Flagellar basal body FlaE YP_388204.1 PFAM: Flagellar hook capping protein; KEGG: dvl:Dvul_1635 flagellar hook capping protein YP_388205.1 PFAM: Flagellar hook-length control protein; KEGG: dvm:DvMF_0248 flagellar hook-length control protein YP_388206.1 PFAM: Glycosyl transferase, family 9; KEGG: dvm:DvMF_0249 glycosyl transferase 9 YP_388207.1 KEGG: dvm:DvMF_0250 CgeB family protein YP_388208.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dsa:Desal_3352 OmpA/MotB domain protein YP_388209.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: das:Daes_1674 MotA/TolQ/ExbB proton channel YP_388210.1 PFAM: Protein of unknown function DUF342; KEGG: dvm:DvMF_0251 protein of unknown function DUF342 YP_388211.1 KEGG: dsa:Desal_3349 anti-sigma-factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS YP_388212.1 KEGG: dvu:DVU2006 hypothetical protein YP_388213.1 KEGG: dma:DMR_p1_00100 transposase for insertion sequence element YP_388214.2 PFAM: ATP-binding region, ATPase-like; KEGG: dvm:DvMF_0253 signal transduction histidine kinase YP_388215.1 KEGG: dsa:Desal_1148 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; Sporulation stage II, protein E C-terminal; SMART: Signal transduction response regulator, receiver region; Protein phosphatase 2C-related YP_388216.1 KEGG: dvl:Dvul_1627 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_388217.2 KEGG: dvm:DvMF_0256 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_388218.1 KEGG: dvm:DvMF_0257 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_388220.1 PFAM: Protein of unknown function DUF164; KEGG: dvm:DvMF_0258 protein of unknown function DUF164 YP_388221.1 KEGG: dvu:DVU1456 NIF3 family protein; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3 YP_388222.2 PFAM: Integrase, catalytic core, phage; KEGG: dma:DMR_18340 site-specific recombinase YP_388223.1 KEGG: dba:Dbac_0897 phage regulatory protein, Rha family; TIGRFAM: Phage regulatory protein, Rha; PFAM: Phage regulatory protein, Rha-like YP_388224.2 PFAM: BRO, N-terminal; KEGG: gka:GK0519 phage associated-antirepressor YP_388227.1 KEGG: dar:Daro_3523 resolvase, N-terminal:resolvase helix-turn-helix region; PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix region; SMART: Resolvase, N-terminal YP_388229.1 KEGG: efa:EF2037 antirepressor, TIGRFAM: Phage regulatory protein, Rha; PFAM: Phage regulatory protein, Rha-like YP_388230.1 PFAM: Heat shock protein Hsp20; KEGG: sfu:Sfum_2860 heat shock protein HSP20 YP_388231.1 PFAM: Phage P22, antirepressor protein, N-terminal; KEGG: lhk:LHK_01530 antirepressor protein YP_388233.1 PFAM: BRO, N-terminal; KEGG: bbp:BBPR_0883 phage antirepressor protein YP_388234.1 PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: noc:Noc_2927 type III restriction enzyme, res subunit; SMART: DEAD-like helicase, N-terminal YP_388236.2 PFAM: Integrase, catalytic core; Transposase IS3/IS911; KEGG: dps:DP1714 transposase YP_388239.1 KEGG: nth:Nther_0363 hypothetical protein YP_388240.1 KEGG: dat:HRM2_p00390 DNA/RNA-dependent helicase, SNF II family domain protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal YP_388244.1 KEGG: dma:DMR_25630 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; Haem NO binding; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_388245.1 PFAM: Uncharacterized protein family UPF0057; KEGG: pat:Patl_4140 hypothetical protein YP_388247.1 KEGG: dsa:Desal_2566 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache, type 2; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_388248.1 KEGG: dvl:Dvul_1517 iojap-like protein; TIGRFAM: Iojap-related protein; PFAM: Iojap-related protein YP_388249.1 TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: dvm:DvMF_0439 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme YP_388250.1 KEGG: dvm:DvMF_0438 hypothetical protein YP_388251.1 KEGG: dal:Dalk_4092 hypothetical protein YP_388253.1 PFAM: Sodium:neurotransmitter symporter; KEGG: dat:HRM2_44940 Na+-dependent transporter YP_388255.2 KEGG: dvl:Dvul_1513 hypothetical protein YP_388256.1 KEGG: dvm:DvMF_0434 phosphoribosylformylglycinamidine synthase YP_388257.1 TIGRFAM: CTP synthase; KEGG: dvl:Dvul_1511 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal YP_388258.1 TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; KEGG: dvu:DVU1624 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA YP_388259.1 TIGRFAM: Phosphatase KdsC; KEGG: dvm:DvMF_0431 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; PFAM: HAD superfamily hydrolase-like, type 3 YP_388260.1 KEGG: dvm:DvMF_0430 protein of unknown function DUF1239 YP_388261.1 PFAM: OstA-like protein; KEGG: dvm:DvMF_0429 OstA family protein YP_388262.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_0428 ABC transporter related; SMART: ATPase, AAA+ type, core YP_388263.1 KEGG: dvl:Dvul_1505 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54; RNA polymerase sigma factor 54, core-binding YP_388264.2 KEGG: dvl:Dvul_1504 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein YP_388265.1 PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: das:Daes_1477 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 YP_388266.1 HAMAP: ATPase, P-loop-containing; KEGG: dvl:Dvul_1502 hypothetical protein YP_388267.2 PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: dvl:Dvul_1501 PTS system fructose subfamily IIA component YP_388268.1 PFAM: Phosphotransferase system, sorbose subfamily IIB component; KEGG: dvm:DvMF_0422 PTS system sorbose subfamily IIB component YP_388269.1 KEGG: dvl:Dvul_1499 hypothetical protein YP_388270.1 KEGG: dvm:DvMF_0420 manganese-dependent inorganic pyrophosphatase; PFAM: DHHA2; Phosphoesterase, RecJ-like YP_388271.2 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: dvm:DvMF_0169 CMP/dCMP deaminase zinc-binding YP_388272.1 KEGG: dvl:Dvul_1602 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730 YP_388273.1 KEGG: dvl:Dvul_1601 beta-lactamase domain-containing protein; PFAM: RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like YP_388274.1 KEGG: dvl:Dvul_1600 methyltransferase; TIGRFAM: Conserved hypothetical protein CHP00095; PFAM: Protein of unknown function methylase YP_388275.1 TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; KEGG: dvm:DvMF_0173 phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase YP_388276.2 PFAM: tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: dvl:Dvul_1598 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase YP_388277.1 KEGG: dol:Dole_0035 SpoIID/LytB domain-containing protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal YP_388278.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: das:Daes_2040 lytic transglycosylase catalytic YP_388279.1 PFAM: Outer membrane chaperone Skp (OmpH); KEGG: dvl:Dvul_1594 outer membrane chaperone Skp (OmpH) YP_388280.2 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: sat:SYN_02087 cytoplasmic protein YP_388281.2 PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: dvm:DvMF_0181 phosphoadenosine phosphosulfate reductase YP_388282.1 KEGG: dvu:DVU1567 hypothetical protein YP_388283.2 KEGG: dvm:DvMF_0183 ferroxidase; PFAM: Ferritin/Dps protein YP_388284.1 TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; KEGG: dvm:DvMF_0184 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase YP_388285.1 TIGRFAM: 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate; KEGG: dvm:DvMF_0185 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_388286.1 KEGG: dba:Dbac_0540 cytoplasmic protein YP_388287.1 KEGG: dvm:DvMF_0187 hypothetical protein YP_388288.1 TIGRFAM: GlpX; KEGG: dvl:Dvul_1592 fructose 1,6-bisphosphatase II; PFAM: GlpX YP_388289.1 KEGG: dvm:DvMF_0562 dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily; PFAM: Dihydrodipicolinate synthetase YP_388290.1 KEGG: dvm:DvMF_0561 diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase YP_388291.1 KEGG: dvm:DvMF_0558 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_388292.2 KEGG: dvl:Dvul_1300 flagellar synthesis regulator FleN YP_388293.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dvl:Dvul_1301 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_388294.1 KEGG: dma:DMR_p1_00100 transposase for insertion sequence element YP_388295.1 KEGG: dvu:DVU2006 hypothetical protein YP_388296.2 PFAM: Diguanylate cyclase, predicted; KEGG: dvm:DvMF_0556 diguanylate cyclase YP_388297.2 TIGRFAM: Peptide chain release factor 2; HAMAP: Peptide chain release factor 2, bacterial; KEGG: dvu:DVU1861 peptide chain release factor 2, programmed frameshift; PFAM: Class I peptide chain release factor; Peptide chain release factor YP_388298.1 KEGG: dvm:DvMF_0554 apolipoprotein N-acyltransferase; TIGRFAM: Apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_388299.2 KEGG: dvm:DvMF_0553 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; Transporter-associated region; SMART: Cystathionine beta-synthase, core YP_388300.1 KEGG: dvu:DVU1830 hypothetical protein YP_388301.1 KEGG: dvm:DvMF_0551 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose-inhibited division protein A-related YP_388302.1 KEGG: dvm:DvMF_0550 diaminopimelate aminotransferase; TIGRFAM: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_388303.1 KEGG: dvl:Dvul_1334 hypothetical protein YP_388304.1 KEGG: dvm:DvMF_0548 guanine deaminase; PFAM: Amidohydrolase 1 YP_388305.1 KEGG: dvm:DvMF_0547 carboxylesterase YP_388306.1 KEGG: dvm:DvMF_0546 glutamate synthase (NADPH); PFAM: Glutamate synthase, central-C; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_388307.1 PFAM: Glutamine amidotransferase, class-II; KEGG: dvm:DvMF_0545 glutamine amidotransferase class-II YP_388308.1 PFAM: Glutamate synthase, alpha subunit, C-terminal; KEGG: dvm:DvMF_0544 glutamate synthase alpha subunit domain protein YP_388309.1 KEGG: dvm:DvMF_0542 preprotein translocase, YajC subunit; TIGRFAM: YajC; PFAM: YajC YP_388310.1 TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; KEGG: dvm:DvMF_0541 preprotein translocase subunit SecD YP_388311.1 KEGG: das:Daes_1531 protein-export membrane protein SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein YP_388313.1 KEGG: dvm:DvMF_0538 cytochrome c class I YP_388314.1 KEGG: dvu:DVU1816 hypothetical protein YP_388315.1 KEGG: dvl:Dvul_1345 cytochrome c oxidase; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I YP_388316.1 PFAM: Cytochrome c oxidase, subunit III; KEGG: dvm:DvMF_0535 cytochrome c oxidase subunit III YP_388317.1 TIGRFAM: Caa(3)-type oxidase, subunit IV; KEGG: dvl:Dvul_1347 caa(3)-type oxidase, subunit IV YP_388318.1 KEGG: dvm:DvMF_0533 cytochrome c oxidase, subunit II; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal YP_388319.1 KEGG: dvl:Dvul_1349 UbiA prenyltransferase; HAMAP: Protohaem IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_388320.1 KEGG: dvm:DvMF_0531 hypothetical protein YP_388321.1 KEGG: dvm:DvMF_0526 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal YP_388322.1 TIGRFAM: Quinolinate synthetase A; KEGG: dvl:Dvul_1352 quinolinate synthetase; PFAM: Quinolinate synthetase A YP_388323.1 TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: dvl:Dvul_1353 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_388324.1 KEGG: dvm:DvMF_0523 magnesium transporter; TIGRFAM: Divalent cation transporter; PFAM: Magnesium transporter, MgtE intracellular region; Cystathionine beta-synthase, core; MgtE integral membrane region YP_388325.1 KEGG: dvm:DvMF_0512 conserved integral membrane protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165 YP_388326.2 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dvm:DvMF_0509 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_388327.1 PFAM: Glycosyl transferase, group 1; KEGG: dvm:DvMF_0508 glycosyl transferase group 1 YP_388328.1 PFAM: Glycosyl transferase, group 1; KEGG: dvu:DVU1803 glycosyl transferase group 1 family protein YP_388329.2 PFAM: Lipase, class 2; KEGG: dvm:DvMF_0506 PGAP1 family protein YP_388330.1 KEGG: dvm:DvMF_0505 hypothetical protein YP_388331.1 KEGG: bpe:BP0516 hypothetical protein YP_388332.1 KEGG: dvl:Dvul_1373 multiple antibiotic resistance (MarC)-related proteins; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related YP_388333.1 KEGG: dvl:Dvul_1374 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_388334.2 PFAM: Cysteine-rich region, CCG; KEGG: dvm:DvMF_0397 protein of unknown function DUF224 cysteine-rich region domain protein YP_388335.1 KEGG: dvm:DvMF_0396 iron-sulfur cluster binding protein; TIGRFAM: Iron-sulphur cluster binding protein; PFAM: Protein of unknown function DUF162 YP_388336.1 PFAM: Protein of unknown function DUF162; KEGG: dvm:DvMF_0395 protein of unknown function DUF162 YP_388338.1 KEGG: drt:Dret_1483 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_388339.1 KEGG: dma:DMR_13260 hypothetical membrane protein YP_388341.1 PFAM: Type IV pilus assembly PilZ; KEGG: dvl:Dvul_3080 type IV pilus assembly PilZ YP_004849540.1 KEGG: das:Daes_1665 hypothetical protein YP_388344.2 PFAM: Glycosyl transferase, group 1; KEGG: das:Daes_1664 group 1 glycosyl transferase YP_388345.1 KEGG: das:Daes_1663 hypothetical protein YP_388346.1 KEGG: das:Daes_1662 CACA family Na+/Ca+ antiporter; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; PFAM: Sodium/calcium exchanger membrane region YP_388347.1 PFAM: Peptidase M48, Ste24p; KEGG: das:Daes_1661 peptidase M48 Ste24p YP_388348.2 PFAM: Mechanosensitive ion channel MscS; KEGG: das:Daes_1660 mechanosensitive ion channel protein MscS YP_388350.1 PFAM: Restriction endonuclease, type IV-like, Mrr; Protein of unknown function DUF511; KEGG: geb:GM18_2920 restriction endonuclease YP_388351.1 KEGG: geb:GM18_2921 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal YP_388352.1 KEGG: geb:GM18_2923 restriction modification system DNA specificity domain-containing protein YP_388353.1 PFAM: DNA methylase, adenine-specific; KEGG: geb:GM18_2924 N-6 DNA methylase YP_388354.1 KEGG: geb:GM18_2925 excisionase DNA-binding domain-containing protein; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory YP_388355.1 PFAM: AIG2-like; KEGG: geb:GM18_2926 AIG2 family protein YP_388356.1 KEGG: dly:Dehly_1631 glucosamine 6-phosphate synthetase-like protein YP_388357.1 KEGG: das:Daes_1648 hypothetical protein YP_388358.1 KEGG: das:Daes_1647 amidoligase enzyme YP_388359.1 KEGG: dly:Dehly_1634 hypothetical protein YP_388360.1 KEGG: dly:Dehly_1635 BNR repeat-containing glycosyl hydrolase YP_388361.1 KEGG: das:Daes_1644 hypothetical protein YP_388362.1 KEGG: sfu:Sfum_3836 hypothetical protein YP_388363.1 KEGG: sfu:Sfum_3835 hypothetical protein YP_388364.1 KEGG: sfu:Sfum_3834 hypothetical protein YP_388365.1 KEGG: sfu:Sfum_3833 phage tail protein; TIGRFAM: Phage tail protein; PFAM: Phage tail protein I YP_388366.1 PFAM: Baseplate assembly protein J-like, predicted; KEGG: das:Daes_1639 baseplate J family protein YP_388367.1 PFAM: GPW/gp25; KEGG: das:Daes_1638 gpW/GP25 family protein YP_388368.1 KEGG: sfu:Sfum_3830 hypothetical protein YP_388369.2 KEGG: das:Daes_1636 hypothetical protein YP_004849542.1 KEGG: das:Daes_1635 hypothetical protein YP_388370.1 KEGG: dly:Dehly_1645 PaaR repeat-containing protein YP_388371.1 KEGG: geb:GM18_2943 hypothetical protein YP_388372.1 KEGG: das:Daes_1632 hypothetical protein YP_388373.1 PFAM: Protein of unknown function DUF1353; KEGG: das:Daes_1631 hypothetical protein YP_388374.1 PFAM: Peptidase M15A, C-terminal; KEGG: dbr:Deba_1793 peptidase M15A YP_388375.1 KEGG: das:Daes_1629 phage protein D-like protein YP_004849543.1 KEGG: dbr:Deba_1795 hypothetical protein YP_388376.1 KEGG: dly:Dehly_1652 hypothetical protein YP_388377.1 KEGG: dly:Dehly_1653 hypothetical protein YP_388378.1 KEGG: sfu:Sfum_3818 TP901 family phage tail tape measure protein; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region YP_388379.1 KEGG: das:Daes_1624 hypothetical protein YP_388380.1 PFAM: Conserved hypothetical protein CHP02241, phage tail region protein; KEGG: sfu:Sfum_3816 hypothetical protein YP_388381.1 KEGG: geb:GM18_2954 phage tail sheath protein YP_004849544.1 KEGG: dly:Dehly_1658 hypothetical protein YP_388382.1 KEGG: das:Daes_1620 hypothetical protein YP_388383.1 PFAM: Metallophosphoesterase; KEGG: dol:Dole_0975 metallophosphoesterase YP_388384.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cwo:Cwoe_4876 transcriptional regulator, TetR family YP_388385.1 TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: sat:SYN_02218 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, C-terminal; Haloacid dehalogenase-like hydrolase YP_388387.2 KEGG: sfu:Sfum_1508 hypothetical protein YP_388388.1 PFAM: Dihaem cytochrome c; KEGG: dol:Dole_3094 lipoprotein YP_388389.1 PFAM: Nodulation efficiency, NfeD; KEGG: sfu:Sfum_1509 hypothetical protein YP_388391.2 KEGG: das:Daes_1619 hypothetical protein YP_004849547.1 KEGG: geb:GM18_2958 hypothetical protein YP_388392.1 KEGG: geb:GM18_2959 hypothetical protein YP_388393.1 KEGG: geb:GM18_2960 hypothetical protein YP_388394.1 KEGG: dbr:Deba_1814 hypothetical protein YP_388395.1 KEGG: sfu:Sfum_3807 hypothetical protein YP_388396.1 KEGG: dbr:Deba_1816 site-specific DNA-methyltransferase (adenine-specific); PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_388397.1 KEGG: geb:GM18_2964 hypothetical protein YP_388398.1 KEGG: sfu:Sfum_3804 hypothetical protein YP_388399.1 KEGG: geb:GM18_2966 phage head morphogenesis protein, SPP1 gp7 family; TIGRFAM: Phage head morphogenesis protein, SPP1 gp7; PFAM: Phage head morphogenesis protein, SPP1 gp7 YP_388400.2 KEGG: dbr:Deba_1820 hypothetical protein YP_388401.1 KEGG: sfu:Sfum_3801 hypothetical protein YP_388402.1 KEGG: dbr:Deba_1822 hypothetical protein YP_388403.1 KEGG: sfu:Sfum_3799 hypothetical protein YP_388404.2 KEGG: dly:Dehly_1683 hypothetical protein YP_388405.1 KEGG: dbr:Deba_1825 hypothetical protein YP_388406.1 PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: dbr:Deba_1826 integrase YP_388407.1 KEGG: dbr:Deba_1827 hypothetical protein YP_388408.1 KEGG: das:Daes_1595 hypothetical protein YP_388409.1 KEGG: das:Daes_1594 hypothetical protein YP_388411.1 KEGG: sfu:Sfum_3792 abortive phage resistance protein-like protein YP_388412.1 KEGG: sfu:Sfum_3791 abortive phage resistance protein-like protein YP_388413.1 PFAM: DNA primase, catalytic core, N-terminal; KEGG: sfu:Sfum_3790 DNA primase catalytic core YP_388414.2 KEGG: dly:Dehly_1690 UvrD/REP helicase YP_388415.1 PFAM: ERCC4 domain; KEGG: sfu:Sfum_3788 ERCC4 domain-containing protein YP_388416.1 PFAM: Protein of unknown function DUF669; KEGG: sfu:Sfum_3787 hypothetical protein YP_388417.1 KEGG: sfu:Sfum_3786 hypothetical protein YP_388418.1 KEGG: dly:Dehly_1694 hypothetical protein YP_388419.1 KEGG: geb:GM18_2985 hypothetical protein YP_388420.1 KEGG: sfu:Sfum_3783 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_388421.1 KEGG: dly:Dehly_1697 hypothetical protein YP_388422.1 KEGG: dbr:Deba_1839 hypothetical protein YP_388423.1 KEGG: sfu:Sfum_3780 hypothetical protein YP_388424.1 KEGG: dbr:Deba_1841 LexA family transcriptional regulator; TIGRFAM: Peptidase S24, LexA repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; LexA DNA-binding region YP_388425.1 KEGG: das:Daes_1581 hypothetical protein YP_388426.1 KEGG: dly:Dehly_1702 bacteriophage-like protein YP_388427.1 KEGG: das:Daes_1579 resolvase domain-containing protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_388428.1 KEGG: dly:Dehly_1704 phage-like protein YP_388432.1 KEGG: dvm:DvMF_0386 hypothetical protein YP_388433.1 KEGG: mgm:Mmc1_3271 PAS/PAC sensor hybrid histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like YP_388434.1 KEGG: dar:Daro_3553 response regulator receiver; PFAM: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region YP_388436.1 PFAM: Integrase, catalytic core; KEGG: dau:Daud_0321 integrase catalytic subunit YP_388438.1 KEGG: dsa:Desal_1889 undecaprenyl pyrophosphate phosphatase; TIGRFAM: Bacitracin resistance protein BacA; PFAM: Bacitracin resistance protein BacA YP_388440.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: dvm:DvMF_0376 permease YjgP/YjgQ family protein YP_388441.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: dvl:Dvul_1424 permease YjgP/YjgQ family protein YP_388442.1 KEGG: dvm:DvMF_0374 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related YP_388444.1 HAMAP: Dehydroquinase, class II; KEGG: dvm:DvMF_0373 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II YP_388445.1 TIGRFAM: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; KEGG: dvl:Dvul_1421 elongation factor P; SMART: Elongation factor P, C-terminal YP_388447.2 PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: dvl:Dvul_1420 cell division FtsK/SpoIIIE YP_388448.1 KEGG: dvl:Dvul_1419 outer membrane lipoprotein carrier protein LolA; TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; PFAM: Outer membrane lipoprotein carrier protein LolA YP_388450.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: dvm:DvMF_0369 pseudouridine synthase; SMART: RNA-binding S4 YP_388451.1 TIGRFAM: SirA-related, selenium metabolism; KEGG: dvm:DvMF_0368 hypothetical protein YP_388452.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, lipid A export, MsbA; KEGG: dvm:DvMF_0367 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane region YP_388453.1 PFAM: Protein of unknown function DUF374; KEGG: dvm:DvMF_0366 protein of unknown function DUF374 YP_388454.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: dvm:DvMF_0365 lipid A biosynthesis acyltransferase YP_388460.1 KEGG: dvm:DvMF_0363 TRASH domain protein YP_388461.1 KEGG: dvl:Dvul_1430 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_388462.1 TIGRFAM: LL-diaminopimelate aminotransferase; KEGG: dvm:DvMF_0361 LL-diaminopimelate aminotransferase; PFAM: Aminotransferase, class I/II YP_388463.1 KEGG: dvm:DvMF_0359 tyrosine recombinase XerD; TIGRFAM: Tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_388464.1 PFAM: Polynucleotide adenylyltransferase region; Cystathionine beta-synthase, core; Phosphoesterase, DHHA1; Phosphoesterase, RecJ-like; KEGG: dvl:Dvul_1433 polynucleotide adenylyltransferase region YP_388465.1 PFAM: Histidine triad (HIT) protein; KEGG: dvl:Dvul_1434 histidine triad (HIT) protein YP_388466.1 KEGG: dvm:DvMF_0357 histidine triad (HIT) protein YP_388467.1 KEGG: dvm:DvMF_0356 tetratricopeptide TPR_4 YP_388468.1 TIGRFAM: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; KEGG: dvu:DVU1649 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core YP_388469.1 KEGG: dvl:Dvul_1438 lipoprotein YP_388470.1 TIGRFAM: Diaminopimelate decarboxylase; KEGG: dma:DMR_21290 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_388471.1 SMART: MGS-like; TIGRFAM: Methylglyoxal synthase; KEGG: ssm:Spirs_3857 methylglyoxal synthase; PFAM: MGS-like YP_388472.1 KEGG: dvm:DvMF_0352 phage repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; Bacteriophage CI repressor; SMART: Helix-turn-helix type 3 YP_388474.2 PFAM: Protein of unknown function DUF330; KEGG: dvm:DvMF_0041 protein of unknown function DUF330 YP_388475.1 PFAM: Mammalian cell entry related; KEGG: dma:DMR_32920 hypothetical protein YP_388476.1 PFAM: ABC transporter-like; KEGG: dma:DMR_32930 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_388477.1 PFAM: Protein of unknown function DUF140; KEGG: dma:DMR_32940 ABC transporter permease YP_388479.1 PFAM: Glycosyl transferase, family 2; KEGG: lip:LI0929 cell wall biosynthesis glycosyltransferase YP_388480.1 KEGG: dvm:DvMF_0349 preprotein translocase subunit SecG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit YP_388481.1 TIGRFAM: Triosephosphate isomerase; KEGG: dvm:DvMF_0348 triose-phosphate isomerase; PFAM: Triosephosphate isomerase YP_388482.1 KEGG: dvl:Dvul_1409 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_388483.1 PFAM: NUDIX hydrolase domain; KEGG: dvm:DvMF_0346 NUDIX hydrolase YP_388484.2 PFAM: Inositol monophosphatase; KEGG: dvm:DvMF_0345 inositol-phosphate phosphatase YP_388485.1 KEGG: dvm:DvMF_0344 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl YP_388486.2 KEGG: dvl:Dvul_1405 GAF sensor protein; PFAM: GAF; SMART: GAF YP_388487.1 KEGG: dvm:DvMF_0342 hypothetical protein YP_388488.2 TIGRFAM: Glycine cleavage system T protein; KEGG: dvl:Dvul_1403 glycine cleavage system T protein; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel YP_388489.2 KEGG: dvm:DvMF_0340 16S ribosomal RNA methyltransferase RsmE; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E YP_388490.3 KEGG: dvm:DvMF_0339 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_388491.1 KEGG: dvm:DvMF_0338 glycosyl transferase, group 2 family protein YP_388492.2 PFAM: Transport-associated; KEGG: dsa:Desal_2103 transport-associated YP_388493.1 KEGG: dvl:Dvul_1399 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_388494.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dvm:DvMF_0336 transcriptional regulator, TetR family YP_388495.1 KEGG: dvm:DvMF_0335 hypothetical protein YP_388496.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: dvu:DVU1693 glutamyl-tRNA synthetase YP_388499.1 PFAM: Peptidase S16, lon C-terminal; KEGG: dvm:DvMF_0312 peptidase S16 lon domain protein YP_388500.3 PFAM: Heat shock protein Hsp20; KEGG: dvm:DvMF_0311 heat shock protein HSP20 YP_388502.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dvm:DvMF_0310 PpiC-type peptidyl-prolyl cis-trans isomerase YP_388503.1 PFAM: Ribosomal protein S1, RNA binding domain; KEGG: dvm:DvMF_0309 30S ribosomal protein S1 YP_388504.1 KEGG: bja:bll4284 acetyl hydrolace YP_388505.1 SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: dvl:Dvul_1611 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF YP_388506.1 TIGRFAM: Heat shock protein HslU; PFAM: ATPase associated with various cellular activities, AAA-2; KEGG: dvm:DvMF_0307 ATP-dependent protease ATP-binding subunit HslU; SMART: ATPase, AAA+ type, core YP_388507.1 TIGRFAM: Acetylglutamate kinase; KEGG: dvl:Dvul_1613 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase YP_388508.1 KEGG: drt:Dret_1875 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_388510.1 PFAM: FeS cluster biogenesis; KEGG: dvl:Dvul_2625 HesB/YadR/YfhF-family protein YP_388512.2 PFAM: FeS cluster biogenesis; KEGG: dvl:Dvul_1688 HesB/YadR/YfhF-family protein YP_388513.2 KEGG: dvu:DVU1465 CgeB family protein YP_388514.1 PFAM: Glycosyl transferase, family 9; KEGG: dvu:DVU1464 heptosyltransferase YP_388515.1 TIGRFAM: Sirohaem synthase, N-terminal; KEGG: dvm:DvMF_0298 siroheme synthase YP_388516.1 PFAM: Cytochrome c assembly protein; KEGG: dvm:DvMF_0297 cytochrome c assembly protein YP_388517.1 KEGG: dvm:DvMF_0296 glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; PFAM: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal YP_388518.1 KEGG: dvm:DvMF_0295 hypothetical protein YP_388519.1 KEGG: dvm:DvMF_0294 tRNA(Ile)-lysidine synthetase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; PFAM: PP-loop YP_388520.2 KEGG: dvm:DvMF_0293 adenylate kinase; HAMAP: Adenylate kinase; PFAM: Adenylate kinase YP_388521.1 KEGG: das:Daes_1720 potassium uptake protein, TrkH family; TIGRFAM: Potassium uptake protein TrkH; PFAM: Cation transporter YP_388522.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: drt:Dret_1970 potassium transporter peripheral membrane component YP_388523.1 TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: dvm:DvMF_0292 30S ribosomal protein S20; PFAM: Ribosomal protein S20 YP_388524.1 PFAM: Integrase, catalytic core; KEGG: dau:Daud_0321 integrase catalytic subunit YP_388525.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; KEGG: dvm:DvMF_0291 glycyl-tRNA synthetase, beta subunit YP_388526.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: dvm:DvMF_0290 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit YP_388527.1 TIGRFAM: Recombination protein O, RecO; KEGG: dvl:Dvul_1264 DNA repair protein RecO YP_388528.1 SMART: Helix-turn-helix type 3; KEGG: dvm:DvMF_0288 transcriptional regulator, XRE family YP_388529.2 PFAM: SurA N-terminal; KEGG: dvm:DvMF_0287 SurA domain protein YP_388530.1 PFAM: SurA N-terminal; KEGG: dvm:DvMF_0286 hypothetical protein YP_388531.1 TIGRFAM: Transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Transcription factor CarD; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; KEGG: dvm:DvMF_0285 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_388532.1 KEGG: dvm:DvMF_0284 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_388533.1 KEGG: dvm:DvMF_0283 hypothetical protein YP_388534.1 TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: dvm:DvMF_0282 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation YP_388535.3 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: dvm:DvMF_0281 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ YP_388536.1 KEGG: dvm:DvMF_0280 4'-phosphopantetheinyl transferase; TIGRFAM: Phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; PFAM: 4'-phosphopantetheinyl transferase YP_388537.1 KEGG: dvm:DvMF_0279 carbohydrate kinase, YjeF related protein; TIGRFAM: Uncharacterized protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: Uncharacterized protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal YP_388538.1 KEGG: dvm:DvMF_0278 CBS domain containing membrane protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_388539.1 KEGG: dvm:DvMF_0277 protein of unknown function UPF0079; TIGRFAM: Uncharacterized protein family UPF0079, ATPase bacteria; PFAM: Uncharacterized protein family UPF0079, ATPase bacteria YP_388540.1 KEGG: dvm:DvMF_0276 aspartate kinase; TIGRFAM: Aspartate kinase region; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT YP_388541.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase related; KEGG: dvm:DvMF_0275 alpha-isopropylmalate/homocitrate synthase transferase; PFAM: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; Pyruvate carboxyltransferase YP_388542.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dvl:Dvul_1372 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_388543.1 KEGG: dvl:Dvul_1371 nuclease; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like) YP_388544.1 KEGG: dvm:DvMF_0494 RNA polymerase, sigma 70 subunit, RpoD subfamily; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 1.2 YP_388545.1 TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; KEGG: dvl:Dvul_1369 DNA primase; SMART: Toprim domain, subgroup YP_388546.1 KEGG: dvu:DVU1790 MutS2 family protein; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal YP_388547.1 KEGG: dvm:DvMF_0497 GatB/YqeY family protein YP_388548.1 TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: dvm:DvMF_0498 30S ribosomal protein S21; PFAM: Ribosomal protein S21 YP_388549.1 KEGG: dvl:Dvul_1365 hypothetical protein YP_388550.1 KEGG: dvl:Dvul_1364 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_388551.1 TIGRFAM: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase; KEGG: dvm:DvMF_0501 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal YP_388552.1 KEGG: dpr:Despr_1891 trehalose 6-phosphate synthase; PFAM: Glycosyl transferase, family 20 YP_388553.1 KEGG: drt:Dret_1903 trehalose-phosphatase; TIGRFAM: Trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Trehalose-phosphatase YP_388554.1 PFAM: Protein of unknown function DUF2062; KEGG: dvl:Dvul_1362 hypothetical protein YP_388555.1 TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: dvu:DVU1799 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_388556.1 KEGG: das:Daes_1821 hypothetical protein YP_388557.1 TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: dvl:Dvul_1325 lipoprotein YP_388558.2 TIGRFAM: Thioredoxin reductase; KEGG: dvl:Dvul_1324 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_388559.1 KEGG: dvm:DvMF_0402 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_388560.1 TIGRFAM: Peptidase M22, glycoprotease, subgroup; KEGG: dvl:Dvul_1322 metalloendopeptidase glycoprotease; PFAM: Peptidase M22, glycoprotease YP_388561.1 KEGG: dvl:Dvul_1321 fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase YP_388562.1 PFAM: Sporulation/cell division region, bacteria; KEGG: dvm:DvMF_0405 hypothetical protein YP_388563.1 KEGG: dvl:Dvul_1319 hypothetical protein YP_388564.1 PFAM: Septum formation initiator; KEGG: dvm:DvMF_0407 septum formation initiator YP_388565.1 KEGG: dvm:DvMF_0408 hypothetical protein YP_388566.1 KEGG: dvl:Dvul_1316 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_388567.1 PFAM: ATPase-like, ParA/MinD; KEGG: dvm:DvMF_0410 Mrp protein YP_388568.1 KEGG: dvm:DvMF_0411 SNARE associated Golgi protein YP_388569.1 TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: dvm:DvMF_0412 protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_388570.1 KEGG: dvm:DvMF_0413 signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_388571.1 PFAM: Peptidase M23; KEGG: dvu:DVU1851 M24/M37 family peptidase YP_388572.1 KEGG: dvm:DvMF_0416 pyruvate phosphate dikinase PEP/pyruvate-binding; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme; PEP-utilising enzyme, mobile region YP_388573.1 PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Pyruvate carboxyltransferase; Biotin carboxylase, C-terminal; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin/lipoyl attachment; KEGG: dvm:DvMF_0417 pyruvate carboxylase; SMART: Biotin carboxylase, C-terminal YP_388574.2 KEGG: dvm:DvMF_0418 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase YP_388575.2 PFAM: Polynucleotide adenylyltransferase region; KEGG: dvl:Dvul_1326 polynucleotide adenylyltransferase region YP_388576.1 KEGG: dvl:Dvul_1519 phenylacetate--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_388577.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_1520 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_388578.1 KEGG: dvl:Dvul_1521 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region YP_388580.1 PFAM: Amino acid-binding ACT; KEGG: dvl:Dvul_1522 amino acid-binding ACT domain-containing protein YP_388581.1 PFAM: Uncharacterized protein family UPF0027; KEGG: avn:Avin_46150 hypothetical protein YP_388582.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; KEGG: dvl:Dvul_1523 molybdopterin oxidoreductase YP_388583.1 TIGRFAM: NAD+ synthase; KEGG: dvm:DvMF_0449 NAD+ synthetase; PFAM: NAD+ synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_388584.1 TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; KEGG: dvl:Dvul_1525 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase YP_388585.2 SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: dvm:DvMF_0451 DNA ligase, NAD-dependent; HAMAP: DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT YP_388586.1 KEGG: dvm:DvMF_0452 hypothetical protein YP_388587.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; Ion transport 2; KEGG: dvm:DvMF_0453 TrkA-N domain protein YP_388588.1 TIGRFAM: Excinuclease ABC, B subunit; PFAM: DNA/RNA helicase, C-terminal; UvrB/UvrC protein; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: dvl:Dvul_1529 excinuclease ABC subunit B; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_388589.1 KEGG: dvl:Dvul_1530 hypothetical protein YP_388590.1 TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: afw:Anae109_0837 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: Leucyl/phenylalanyl-tRNA-protein transferase YP_388591.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: dvm:DvMF_0458 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core YP_388592.1 PFAM: Adaptor protein ClpS, core; KEGG: dvm:DvMF_0459 ATP-dependent Clp protease adaptor protein ClpS YP_388593.1 PFAM: Adenylate cyclase; KEGG: dvl:Dvul_1534 adenylate cyclase YP_388594.1 KEGG: dvm:DvMF_0461 camphor resistance CrcB protein; HAMAP: CrcB-like protein; PFAM: Camphor resistance CrcB protein YP_388595.1 PFAM: Protein of unknown function DUF190; KEGG: nwa:Nwat_2116 hypothetical protein YP_388596.1 PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver region; KEGG: dvl:Dvul_1538 response regulator receiver modulated CheB methylesterase; SMART: Signal transduction response regulator, receiver region YP_388597.1 PFAM: MCP methyltransferase, CheR-type; KEGG: dvm:DvMF_0466 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type YP_388598.2 KEGG: dvu:DVU1594 chemotaxis protein CheA; PFAM: CheW-like protein; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) region; ATP-binding region, ATPase-like YP_388599.1 KEGG: dvl:Dvul_1541 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_388600.1 KEGG: dvm:DvMF_0469 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling YP_388602.1 KEGG: dvm:DvMF_0471 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core YP_388603.1 TIGRFAM: Zinc finger/thioredoxin KEGG: dvl:Dvul_1544 zinc finger-domain-containing protein YP_388604.1 TIGRFAM: Hypoxanthine phosphoribosyl transferase; KEGG: dvl:Dvul_1545 hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_388605.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dvm:DvMF_0474 acetyltransferase YP_388606.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dvm:DvMF_0475 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_388607.2 KEGG: dvm:DvMF_0476 homocysteine S-methyltransferase; PFAM: Homocysteine S-methyltransferase; Dihydropteroate synthase, DHPS; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding YP_388608.1 KEGG: dvl:Dvul_1549 sigma-70 region 2 domain-containing protein; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 4 YP_388609.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: dvm:DvMF_0478 tetratricopeptide TPR_2 repeat protein YP_388610.1 KEGG: dvl:Dvul_1551 hypothetical protein YP_388612.1 TIGRFAM: Ribose 5-phosphate isomerase B; Ribose/galactose isomerase; KEGG: dvl:Dvul_1553 RpiB/LacA/LacB family sugar-phosphate isomerase; PFAM: Ribose/galactose isomerase YP_388613.1 SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: dvl:Dvul_1554 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR YP_388614.1 KEGG: dvm:DvMF_0483 peptidase M48 Ste24p; PFAM: Peptidase M48, Ste24p; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_388615.1 KEGG: drt:Dret_0554 Appr-1-p processing domain-containing protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing YP_388616.1 PFAM: Proteasome, subunit alpha/beta; KEGG: dvm:DvMF_0485 ATP-dependent protease peptidase subunit YP_388617.1 KEGG: dvm:DvMF_0486 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal YP_388618.1 TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: dvl:Dvul_1558 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase YP_388619.1 KEGG: dvm:DvMF_0488 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: Ribosomal protein L25; PFAM: Ribosomal protein L25, N-terminal YP_388620.1 TIGRFAM: Peptidyl-tRNA hydrolase; KEGG: dvl:Dvul_1560 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase YP_388621.1 PFAM: Transcription factor CarD; KEGG: dvm:DvMF_0490 transcriptional regulator, CarD family YP_388622.1 TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, N-terminal; Rho termination factor, RNA-binding; KEGG: dvl:Dvul_1562 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core YP_388626.2 TIGRFAM: [Ni-Fe]-hydrogenase, small subunit; Twin-arginine translocation pathway, signal sequence; KEGG: dvl:Dvul_1249 hydrogenase (NiFe) small subunit HydA; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit YP_388627.1 KEGG: dvm:DvMF_0273 nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase, large subunit YP_388628.1 KEGG: dvm:DvMF_0272 hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein YP_388629.1 TIGRFAM: [Ni-Fe]-hydrogenase, small subunit; Twin-arginine translocation pathway, signal sequence; KEGG: dvl:Dvul_1246 hydrogenase (NiFe) small subunit HydA; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit YP_388630.1 KEGG: dvl:Dvul_1245 nickel-dependent hydrogenase, large subunit; PFAM: Nickel-dependent hydrogenase, large subunit YP_388631.2 KEGG: dvl:Dvul_1244 hydrogenase expression/formation protein; TIGRFAM: Peptidase A31, hydrogenase expression/formation protein; Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein YP_388632.1 KEGG: dvl:Dvul_1243 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: Hydrogenase expression/formation protein, HupF/HypC YP_388633.1 PFAM: Lipase, GDSL; KEGG: dvm:DvMF_0267 lipolytic protein G-D-S-L family YP_388634.1 TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; KEGG: dvm:DvMF_0266 isoleucyl-tRNA synthetase YP_388635.1 KEGG: dvm:DvMF_0265 lipoprotein signal peptidase; TIGRFAM: Peptidase A8, signal peptidase II; PFAM: Peptidase A8, signal peptidase II YP_004849549.1 KEGG: dvm:DvMF_0264 hypothetical protein YP_388637.1 TIGRFAM: Tol-Pal system, YbgF; KEGG: dvm:DvMF_0263 tol-pal system protein YbgF YP_388638.1 PFAM: NIL domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_1236 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_388639.1 PFAM: Type IV pilus assembly PilZ; KEGG: dma:DMR_22220 hypothetical protein YP_388640.1 KEGG: dvl:Dvul_1621 chemotaxis phosphatase, CheZ YP_388643.1 KEGG: dvl:Dvul_1622 thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region YP_388644.2 KEGG: das:Daes_0573 hypothetical protein YP_388645.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: das:Daes_0574 MotA/TolQ/ExbB proton channel YP_388646.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: das:Daes_0575 MotA/TolQ/ExbB proton channel YP_388647.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: das:Daes_0576 biopolymer transport protein ExbD/TolR YP_388648.1 KEGG: das:Daes_0577 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_388649.1 PFAM: Tetratricopeptide TPR-1; KEGG: dsa:Desal_2086 hypothetical protein YP_388651.1 KEGG: dvm:DvMF_2542 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_388652.1 PFAM: Protein of unknown function DUF1499; KEGG: dal:Dalk_4690 hypothetical protein YP_388653.1 PFAM: Peptidase M48, Ste24p; KEGG: tgr:Tgr7_1109 peptidase M48 Ste24p YP_388654.1 KEGG: dsa:Desal_2308 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein MatE YP_388656.1 PFAM: Acylphosphatase-like; KEGG: dsa:Desal_0646 acylphosphatase YP_388657.1 KEGG: dvl:Dvul_1689 hypothetical protein YP_388658.1 TIGRFAM: Acetohydroxy acid isomeroreductase; KEGG: dvl:Dvul_1690 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal YP_388659.1 KEGG: dvm:DvMF_0154 acetolactate synthase 3 regulatory subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT YP_388660.1 TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: dvm:DvMF_0153 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central region YP_388661.2 KEGG: dvl:Dvul_1693 hypothetical protein YP_388662.1 PFAM: Protein of unknown function DUF167; KEGG: dsa:Desal_2400 hypothetical protein YP_388663.1 KEGG: dvl:Dvul_1695 DivIVA family protein; TIGRFAM: DivIVA domain; PFAM: DivIVA YP_388664.1 PFAM: Protein of unknown function YGGT; KEGG: dvm:DvMF_0149 protein of unknown function YGGT YP_388665.1 KEGG: dvl:Dvul_1697 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_388666.1 KEGG: dvm:DvMF_0147 hypothetical protein YP_388667.1 KEGG: dvm:DvMF_0146 hypothetical protein YP_388668.1 KEGG: dvu:DVU1368 rhodanese-like domain-containing protein; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; SMART: Rhodanese-like YP_388669.1 KEGG: dba:Dbac_0399 twin-arginine translocation protein, TatA/E family subunit; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_388670.1 KEGG: dvm:DvMF_0143 lipoprotein YP_388671.1 KEGG: dol:Dole_0037 TPR repeat-containing protein YP_388672.1 KEGG: dol:Dole_0036 hypothetical protein YP_388673.1 PFAM: Anaerobic cobalt chelatase; KEGG: dvm:DvMF_0142 anaerobic cobalt chelatase YP_388674.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: dvm:DvMF_0141 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_388675.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: dvl:Dvul_1705 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_388676.1 KEGG: dvm:DvMF_0139 nucleoside recognition domain protein YP_388677.1 TIGRFAM: Glycosyl transferase, family 19; KEGG: dvu:DVU1361 lipid A disaccharide synthase; PFAM: Glycosyl transferase, family 19 YP_388679.1 TIGRFAM: UDP-glucose 4-epimerase; KEGG: dvu:DVU1360 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_388680.1 KEGG: dvm:DvMF_0136 hypothetical protein YP_388681.1 KEGG: mem:Memar_0387 geranylgeranyl reductase; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_388682.1 KEGG: dsa:Desal_3779 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_388683.1 PFAM: Methyltransferase type 11; KEGG: dvm:DvMF_0133 methyltransferase type 11 YP_388684.1 KEGG: dal:Dalk_3407 aspartate aminotransferase; PFAM: Aminotransferase, class I/II YP_388685.1 KEGG: dvl:Dvul_1712 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_388686.1 KEGG: dvl:Dvul_1713 hypothetical protein YP_388688.1 SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dvm:DvMF_0130 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; Nucleic acid binding, OB-fold, tRNA/helicase-type; PHP, C-terminal YP_388689.1 KEGG: dvm:DvMF_0129 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase-related YP_388690.1 KEGG: dvl:Dvul_1717 multiple antibiotic resistance (MarC)-related proteins; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related YP_388691.1 PFAM: Nitroreductase-like; KEGG: dvu:DVU3136 nitroreductase YP_388692.2 SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Deoxyxylulose-5-phosphate synthase; KEGG: dvm:DvMF_0126 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_388693.1 PFAM: Polyprenyl synthetase; KEGG: dvl:Dvul_1719 polyprenyl synthetase YP_388694.1 PFAM: Exonuclease VII, small subunit; KEGG: dvm:DvMF_0124 exodeoxyribonuclease VII small subunit YP_388695.1 PFAM: Peptidase M23; KEGG: dvm:DvMF_0123 peptidase M23 YP_388696.1 KEGG: dvm:DvMF_0122 exodeoxyribonuclease VII, large subunit; TIGRFAM: Exonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_388698.1 KEGG: dvm:DvMF_0121 prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; YbaK/aminoacyl-tRNA synthetase associated region; Anticodon-binding YP_388699.1 KEGG: dvl:Dvul_1724 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_388700.1 PFAM: ABC transporter metal-binding lipoprotein; KEGG: das:Daes_1016 periplasmic solute-binding protein YP_388701.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_0118 ABC transporter related; SMART: ATPase, AAA+ type, core YP_388702.1 PFAM: ABC-3; KEGG: dvm:DvMF_0117 ABC-3 protein YP_388703.1 PFAM: Ferric-uptake regulator; KEGG: dvm:DvMF_0116 ferric uptake regulator, Fur family YP_388704.2 KEGG: dvm:DvMF_0115 hypothetical protein YP_004849550.1 KEGG: dvm:DvMF_0114 hypothetical protein YP_388705.2 KEGG: dvm:DvMF_0113 hypothetical protein YP_388706.2 KEGG: das:Daes_2902 TRAP dicarboxylate transporter subunit DctM; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_388707.2 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: das:Daes_2901 tripartite ATP-independent periplasmic transporter DctQ component YP_388708.2 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: dba:Dbac_1708 TRAP dicarboxylate transporter-DctP subunit YP_388709.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dba:Dbac_1709 transcriptional regulator, TetR family YP_388710.1 SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: dvm:DvMF_0112 ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core YP_388711.1 TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase associated with various cellular activities, AAA-2; Clp ATPase, C-terminal; Zinc finger, C4-type; KEGG: dvl:Dvul_1733 ATP-dependent protease ATP-binding subunit ClpX; SMART: ATPase, AAA+ type, core YP_388712.1 TIGRFAM: Peptidase S14, ClpP; KEGG: dvm:DvMF_0110 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP YP_388714.1 KEGG: dvm:DvMF_0109 trigger factor; TIGRFAM: Trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Trigger factor, C-terminal, bacterial YP_388717.1 KEGG: dsa:Desal_0640 selenide, water dikinase; TIGRFAM: Selenide water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal YP_388718.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dvm:DvMF_0108 transcriptional regulator, LysR family YP_388722.1 KEGG: das:Daes_2227 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17; PFAM: Ribosomal protein L17 YP_388723.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert; RNA polymerase, alpha subunit, C-terminal; DNA-directed RNA polymerase, dimerisation; KEGG: dvm:DvMF_0105 DNA-directed RNA polymerase subunit alpha; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type YP_388724.1 TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4; RNA-binding S4; KEGG: dvl:Dvul_1740 30S ribosomal protein S4; SMART: RNA-binding S4 YP_388725.1 KEGG: lip:LI0980 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11 YP_388726.1 KEGG: dvl:Dvul_1742 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13 YP_388727.1 KEGG: dsa:Desal_1207 50S ribosomal protein L36; TIGRFAM: Ribosomal protein L36; PFAM: Ribosomal protein L36 YP_388728.1 TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: dvu:DVU1324 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain YP_388729.1 KEGG: dvm:DvMF_0099 preprotein translocase subunit SecY; TIGRFAM: SecY protein; PFAM: SecY protein YP_388730.1 KEGG: dvm:DvMF_0098 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L15 YP_388731.1 KEGG: dvm:DvMF_0097 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e, conserved region YP_388732.1 KEGG: dvm:DvMF_0096 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal YP_388733.1 KEGG: dvl:Dvul_1749 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5 YP_388734.1 KEGG: dvl:Dvul_1750 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain YP_388735.1 PFAM: Ribosomal protein S8; KEGG: dvm:DvMF_0093 30S ribosomal protein S8 YP_388736.1 PFAM: Ribosomal protein S14; KEGG: dvm:DvMF_0092 30S ribosomal protein S14 YP_388737.1 PFAM: Ribosomal protein L5; KEGG: dvm:DvMF_0091 50S ribosomal protein L5 YP_388738.1 TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: dvl:Dvul_1754 50S ribosomal protein L24; SMART: KOW YP_388739.1 KEGG: dvl:Dvul_1755 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e YP_388740.1 KEGG: dvl:Dvul_1756 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17 YP_388741.1 KEGG: dvm:DvMF_0087 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29 YP_388742.1 KEGG: dvm:DvMF_0086 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_388743.1 TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: dvm:DvMF_0085 30S ribosomal protein S3; SMART: K Homology YP_388744.1 KEGG: dvm:DvMF_0084 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17 YP_388745.1 KEGG: dsa:Desal_1189 ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15 YP_388746.1 KEGG: dvm:DvMF_0082 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2 YP_388747.1 PFAM: Ribosomal protein L25/L23; KEGG: dvm:DvMF_0081 50S ribosomal protein L23 YP_388748.1 PFAM: Ribosomal protein L4/L1e; KEGG: dvm:DvMF_0080 50S ribosomal protein L4 YP_388749.1 KEGG: dvm:DvMF_0079 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3 YP_388750.1 TIGRFAM: Ribosomal protein S10, bacterial; HAMAP: 30S ribosomal protein S10; KEGG: dvl:Dvul_1766 30S ribosomal protein S10; PFAM: Ribosomal protein S10 YP_388753.1 KEGG: dvl:Dvul_1768 elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_388754.1 KEGG: lip:LI0943 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7 YP_388755.1 KEGG: dvl:Dvul_1770 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; PFAM: Ribosomal protein S12/S23 YP_388757.1 TIGRFAM: Sulphate adenylyltransferase; KEGG: dvm:DvMF_0074 sulfate adenylyltransferase; PFAM: Sulphate adenylyltransferase YP_388759.1 PFAM: Protein of unknown function DUF45; KEGG: das:Daes_3063 hypothetical protein YP_388760.1 KEGG: dvm:DvMF_0072 hypothetical protein YP_388762.1 KEGG: dvm:DvMF_0071 hypothetical protein YP_388763.1 PFAM: Nitrate reductase, gamma subunit; KEGG: dvm:DvMF_0070 nitrate reductase gamma subunit YP_388764.1 KEGG: dvl:Dvul_1776 reductase, iron-sulfur binding subunit YP_388765.1 KEGG: dvm:DvMF_0068 cytochrome c family protein YP_388766.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvm:DvMF_0067 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_388767.1 PFAM: Polysulphide reductase, NrfD; KEGG: dvu:DVU1286 reductase, transmembrane subunit YP_388768.1 KEGG: dsa:Desal_1339 small GTP-binding protein; TIGRFAM: Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related YP_388769.1 KEGG: dsa:Desal_0368 biotin synthase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_388770.1 KEGG: dsa:Desal_0367 thiamine biosynthesis protein ThiH; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; SMART: Biotin/thiamin synthesis-associated protein YP_388771.1 KEGG: das:Daes_0597 transcriptional regulator YP_388772.1 KEGG: das:Daes_0598 iron hydrogenase small subunit; PFAM: Iron hydrogenase, small subunit-like; SMART: Iron hydrogenase, small subunit-like YP_388773.1 TIGRFAM: Iron hydrogenase, subset; KEGG: das:Daes_0599 hydrogenase, Fe-only; PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_388774.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: dvu:DVU2240 hydantoinase/oxoprolinase YP_388775.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: dvm:DvMF_0837 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA YP_388776.1 KEGG: dvl:Dvul_1000 peptidase T2, asparaginase 2; PFAM: Peptidase T2, asparaginase 2 YP_388777.1 KEGG: dvl:Dvul_0999 glycogen branching enzyme; PFAM: Alpha-amylase, C-terminal all beta; Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; HAMAP: 1,4-alpha-glucan branching enzyme, core region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_388778.1 TIGRFAM: Glycogen/starch synthases, ADP-glucose type; KEGG: dvu:DVU2244 glycogen synthase; PFAM: Starch synthase catalytic region; Glycosyl transferase, group 1 YP_388779.1 PFAM: NUDIX hydrolase domain; KEGG: dsa:Desal_2793 NUDIX hydrolase YP_388781.2 KEGG: dvm:DvMF_0844 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal YP_388783.1 PFAM: SPOUT methyltransferase, predicted; KEGG: dvm:DvMF_0845 protein of unknown function DUF163 YP_388784.1 KEGG: dvl:Dvul_1811 hypothetical protein YP_388785.1 PFAM: rRNA small subunit methyltransferase G; KEGG: dvm:DvMF_0848 glucose inhibited division protein YP_388786.1 KEGG: dvl:Dvul_1813 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase YP_388787.1 TIGRFAM: Arginyl-tRNA synthetase, class Ic; KEGG: dvm:DvMF_0850 arginyl-tRNA synthetase YP_388788.1 PFAM: Sporulation/cell division region, bacteria; KEGG: drt:Dret_1315 sporulation domain-containing protein YP_388789.1 KEGG: dvu:DVU1246 hypothetical protein; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140 YP_388790.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_0853 ABC transporter related; SMART: ATPase, AAA+ type, core YP_388791.1 PFAM: Mammalian cell entry related; KEGG: dvm:DvMF_0854 mammalian cell entry related domain protein YP_388792.1 PFAM: Toluene tolerance; KEGG: dvm:DvMF_0855 toluene tolerance family protein YP_388793.1 PFAM: VacJ-like lipoprotein; KEGG: dvu:DVU1242 VacJ lipoprotein YP_388795.2 PFAM: Cupin 2, conserved barrel; KEGG: dma:DMR_35390 hypothetical protein YP_388796.1 KEGG: dvm:DvMF_0858 hypothetical protein YP_388797.1 PFAM: Protein of unknown function DUF340, prokaryotic membrane; KEGG: dvl:Dvul_1823 hypothetical protein YP_388798.1 KEGG: dvl:Dvul_1824 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_388799.1 KEGG: dvm:DvMF_0861 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_388800.1 PFAM: ABC transporter-like; KEGG: dvl:Dvul_1826 amino acid ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_388801.1 PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Amino acid-binding ACT; Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: dvm:DvMF_0864 UTP-GlnB uridylyltransferase, GlnD; SMART: Metal-dependent phosphohydrolase, HD region YP_388802.1 PFAM: Nitrogen regulatory protein PII; KEGG: dvl:Dvul_1830 nitrogen regulatory protein P-II YP_388803.1 KEGG: dvm:DvMF_0866 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_388805.1 PFAM: Redoxin; KEGG: dvl:Dvul_1832 redoxin domain-containing protein YP_388806.1 KEGG: dvu:DVU1225 hypothetical protein YP_388807.2 KEGG: dvm:DvMF_0869 hypothetical protein YP_388808.2 PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA binding domain; KEGG: dvu:DVU2246 S1 RNA-binding domain-containing protein YP_388809.1 KEGG: dvl:Dvul_0993 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_388810.1 KEGG: dvm:DvMF_0002 transcriptional regulator, XRE family; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_388812.1 TIGRFAM: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; KEGG: dvm:DvMF_0001 chromosomal replication initiator protein DnaA; SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core YP_388813.1 TIGRFAM: Thymidylate synthase ThyX; KEGG: dvl:Dvul_0990 FAD-dependent thymidylate synthase; PFAM: Thymidylate synthase ThyX YP_388814.1 TIGRFAM: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; KEGG: dvl:Dvul_0989 Holliday junction DNA helicase RuvB; SMART: ATPase, AAA+ type, core YP_388815.1 KEGG: dvm:DvMF_3204 Holliday junction DNA helicase RuvA; TIGRFAM: Bacterial DNA recombination protein RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal YP_388816.1 TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: dvm:DvMF_3202 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_388817.1 KEGG: dvm:DvMF_3201 hypothetical protein; TIGRFAM: Protein of unknown function DUF28; PFAM: Protein of unknown function DUF28 YP_388818.1 PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dvl:Dvul_0985 ribosomal RNA methyltransferase RrmJ/FtsJ YP_388819.2 KEGG: dvm:DvMF_3199 hypothetical protein YP_388820.1 TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; KEGG: ctt:CtCNB1_1254 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; Methionine synthase, vitamin-B12 independent YP_388822.1 PFAM: Methyltransferase type 11; KEGG: dol:Dole_1540 methyltransferase type 11 YP_388823.1 TIGRFAM: Indolepyruvate/phenylpyruvate decarboxylase; KEGG: dvm:DvMF_0027 indolepyruvate/phenylpyruvate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central region YP_388826.1 SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: dvm:DvMF_0026 succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp fold, succinyl-CoA synthetase-type YP_388827.1 PFAM: Protein of unknown function DUF1121; KEGG: dvu:DVU2138 hypothetical protein YP_388828.1 KEGG: psl:Psta_3109 hypothetical protein YP_388829.1 PFAM: Histone deacetylase superfamily; KEGG: dvm:DvMF_0024 histone deacetylase superfamily YP_388830.1 TIGRFAM: Thymidylate kinase; KEGG: dvl:Dvul_1092 dTMP kinase; PFAM: Thymidylate kinase-like YP_388831.1 TIGRFAM: HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: dvl:Dvul_1091 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD region YP_388832.1 KEGG: dvm:DvMF_0021 stationary-phase survival protein SurE; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; PFAM: Survival protein SurE-like phosphatase/nucleotidase YP_388833.1 TIGRFAM: Fructose-1,6-bisphosphate aldolase, class II; Ketose-bisphosphate aldolase, class-II; KEGG: dvl:Dvul_1089 fructose-1,6-bisphosphate aldolase, class II; PFAM: Ketose-bisphosphate aldolase, class-II YP_388834.1 SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: dvu:DVU2144 glyceraldehyde 3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YP_388835.1 KEGG: dvm:DvMF_0010 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, predicted YP_388836.1 PFAM: Protein of unknown function DUF814; Fibronectin-binding A, N-terminal; KEGG: dvm:DvMF_0009 protein of unknown function DUF814 YP_388837.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: dvl:Dvul_1083 TraR/DksA family transcriptional regulator YP_388840.1 KEGG: dvm:DvMF_0004 protein of unknown function DUF181; TIGRFAM: YcaO-like; PFAM: YcaO-like; Tetratricopeptide TPR-1 YP_388841.2 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: atu:Atu2320 TetR family transcriptional regulator YP_388842.1 PFAM: Small multidrug resistance protein; KEGG: atu:Atu2319 quaternary ammonium compound-resistance protein YP_388843.3 KEGG: dvm:DvMF_0871 hypothetical protein YP_388844.1 KEGG: dvm:DvMF_0872 hypothetical protein YP_388845.1 SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Trehalose synthase/alpha-amylase, N-terminal; KEGG: tro:trd_1931 alpha amylase, catalytic subdomain; PFAM: Glycosyl hydrolase, family 13, catalytic region YP_388846.1 PFAM: Staphylococcal nuclease (SNase-like); KEGG: dvm:DvMF_0873 nuclease (SNase domain protein) YP_388847.1 KEGG: dvu:DVU2114 sigma-54 dependent transcriptional regulator/response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_388849.1 PFAM: Flp/Fap pilin component; KEGG: dvl:Dvul_1115 Flp/Fap pilin component YP_388850.1 PFAM: Peptidase A24A, prepilin type IV; KEGG: dvl:Dvul_1114 peptidase A24A, prepilin type IV YP_388851.1 TIGRFAM: Pilus assembly, Flp-type CpaB; PFAM: SAF domain; KEGG: dvm:DvMF_2742 Flp pilus assembly protein CpaB; SMART: SAF domain YP_388852.1 PFAM: Type II/III secretion system; Transport-associated; KEGG: dvm:DvMF_2741 type II and III secretion system protein YP_388854.1 KEGG: dvm:DvMF_2739 response regulator receiver protein YP_388855.1 PFAM: Type II secretion system protein E; KEGG: dvm:DvMF_2738 type II secretion system protein E YP_388856.1 PFAM: Type II secretion system F domain; KEGG: dvm:DvMF_2737 type II secretion system protein YP_388857.1 PFAM: Type II secretion system F domain; KEGG: dvm:DvMF_2736 type II secretion system protein YP_388858.1 PFAM: Sporulation/cell division region, bacteria; Tetratricopeptide TPR-1; KEGG: dvm:DvMF_2735 TPR repeat-containing protein YP_388859.1 PFAM: TadE-like; KEGG: dvm:DvMF_2734 TadE family protein YP_388860.1 KEGG: dvm:DvMF_2733 von Willebrand factor type A; PFAM: Protein of unknown function DUF2134, membrane; von Willebrand factor, type A; SMART: von Willebrand factor, type A YP_388861.1 PFAM: TadE-like; KEGG: dvl:Dvul_1103 TadE family protein YP_388862.2 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; PAS fold; Signal transduction response regulator, receiver region; KEGG: dvm:DvMF_2731 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; Signal transduction response regulator, receiver region YP_388863.1 PFAM: Sodium:neurotransmitter symporter; KEGG: dvm:DvMF_0874 sodium:neurotransmitter symporter YP_388864.1 KEGG: dvl:Dvul_1904 thiamine biosynthesis protein YP_388865.1 TIGRFAM: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA; KEGG: dvm:DvMF_0876 recombinase A; SMART: ATPase, AAA+ type, core YP_388866.1 KEGG: dvm:DvMF_0877 alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1 YP_388867.1 KEGG: dvm:DvMF_1328 heavy metal-binding domain-containing protein YP_388870.1 TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; KEGG: dvu:DVU0984 (dimethylallyl)adenosine tRNA methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB YP_388871.1 PFAM: Protein of unknown function DUF151; KEGG: dvl:Dvul_2005 hypothetical protein YP_388872.1 KEGG: dvm:DvMF_1332 hypothetical protein YP_388873.2 PFAM: Acriflavin resistance protein; KEGG: dsa:Desal_1096 acriflavin resistance protein YP_388874.1 KEGG: dvl:Dvul_2011 hypothetical protein YP_388876.1 KEGG: dvm:DvMF_1334 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_388877.1 KEGG: dvm:DvMF_0880 phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU YP_388878.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease 1; KEGG: dvl:Dvul_1910 phosphate transporter ATP-binding protein; PFAM: ABC transporter-like YP_388879.1 KEGG: dvm:DvMF_0882 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal YP_388880.1 KEGG: dvl:Dvul_1912 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease YP_388881.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_1913 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_388882.1 PFAM: Nitrite/sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvm:DvMF_0885 nitrite and sulphite reductase 4Fe-4S region YP_388884.1 KEGG: dvm:DvMF_0886 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related YP_388885.1 PFAM: Single-stranded nucleic acid binding R3H; KEGG: dvm:DvMF_0887 single-stranded nucleic acid binding R3H domain protein YP_388886.1 KEGG: dvm:DvMF_0888 60 kDa inner membrane insertion protein; TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; PFAM: Membrane insertion protein, OxaA/YidC YP_388887.1 KEGG: dvl:Dvul_1918 hypothetical protein; TIGRFAM: Protein of unknown function DUF37; PFAM: Protein of unknown function DUF37 YP_388888.1 TIGRFAM: Ribonuclease P; HAMAP: Ribonuclease P; KEGG: dvm:DvMF_0890 ribonuclease P protein component; PFAM: Ribonuclease P YP_388890.1 KEGG: dvm:DvMF_0892 hypothetical protein YP_388891.1 KEGG: csa:Csal_2510 hypothetical protein YP_388892.2 PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_388893.1 KEGG: dvm:DvMF_0896 hypothetical protein YP_388894.1 SMART: Endodeoxyribonuclease IV; TIGRFAM: Endodeoxyribonuclease IV; KEGG: das:Daes_3292 apurinic endonuclease Apn1; PFAM: Xylose isomerase, TIM barrel domain YP_388897.1 PFAM: Small multidrug resistance protein; KEGG: dvl:Dvul_0064 small multidrug resistance protein YP_388898.1 PFAM: Small multidrug resistance protein; KEGG: lip:LI0925 membrane transporters of cations and cationic drugs YP_388900.1 PFAM: YcaO-like; KEGG: dvm:DvMF_3119 protein of unknown function DUF181 YP_388901.1 KEGG: dsa:Desal_3119 Na+/Ca+ antiporter, CaCA family; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; PFAM: Sodium/calcium exchanger membrane region YP_388902.1 KEGG: dvm:DvMF_3117 hypothetical protein YP_388903.1 KEGG: dvm:DvMF_3116 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold; HAMP linker domain; Cache; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS; HAMP linker domain YP_388904.1 PFAM: Metallophosphoesterase; KEGG: bpa:BPP1023 phosphoesterase YP_388905.1 PFAM: Nitroreductase-like; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_1838 nitroreductase YP_388906.2 KEGG: dvm:DvMF_3114 hypothetical protein YP_388907.1 PFAM: Protein of unknown function DUF115; KEGG: dvm:DvMF_3113 protein of unknown function DUF115 YP_388909.1 KEGG: dvl:Dvul_1840 hypothetical protein; TIGRFAM: Protein of unknown function DUF77; PFAM: Protein of unknown function DUF77 YP_388910.1 KEGG: dvl:Dvul_1841 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein MatE YP_388911.1 KEGG: dvl:Dvul_1842 phosphoesterase, PA-phosphatase related; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_388912.1 KEGG: dvl:Dvul_1843 glycosyl transferase YP_388913.1 PFAM: Peptidase S54, rhomboid; KEGG: dvm:DvMF_3108 rhomboid family protein YP_388914.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: dvl:Dvul_1845 FxsA cytoplasmic membrane protein YP_388916.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dvm:DvMF_3106 protein of unknown function DUF6 transmembrane YP_388917.1 KEGG: dvl:Dvul_1846 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; PFAM: Ribosomal protein L28 YP_388918.1 PFAM: Protein of unknown function DUF177; KEGG: dvl:Dvul_1847 hypothetical protein YP_004849552.1 TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: dvl:Dvul_1848 50S ribosomal protein L32; PFAM: Ribosomal protein L32p YP_388919.1 KEGG: dvm:DvMF_3102 glycerol-3-phosphate acyltransferase PlsX; TIGRFAM: Phospholipid biosynthesis protein, PlsX like; PFAM: Fatty acid synthesis plsX protein YP_388920.1 TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: dvl:Dvul_1850 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_388921.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; KEGG: dvl:Dvul_1851 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_388922.1 KEGG: dvl:Dvul_1852 acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP); PFAM: Phosphopantetheine-binding YP_388923.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: dvm:DvMF_3098 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_388924.1 KEGG: dvm:DvMF_3097 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase YP_388925.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: dvl:Dvul_1855 CMP/dCMP deaminase, zinc-binding YP_388926.2 TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: dvl:Dvul_1856 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding YP_388927.1 TIGRFAM: Lumazine-binding protein; KEGG: dvu:DVU1200 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_388928.1 KEGG: dvl:Dvul_1858 GTP cyclohydrolase II; TIGRFAM: GTP cyclohydrolase II; DHBP synthase RibB; PFAM: DHBP synthase RibB; GTP cyclohydrolase II YP_388929.1 KEGG: dvm:DvMF_3092 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_388930.1 KEGG: dvl:Dvul_1860 NusB antitermination factor; TIGRFAM: NusB antitermination factor; PFAM: NusB/RsmB/TIM44 YP_388931.1 TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: dvl:Dvul_1861 leucyl-tRNA synthetase YP_388932.1 KEGG: dvm:DvMF_3089 lipoprotein YP_388933.1 KEGG: dvm:DvMF_3088 hypothetical protein YP_388934.1 KEGG: dvl:Dvul_1864 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like YP_388935.1 PFAM: Acylphosphatase-like; KEGG: bts:Btus_1137 acylphosphatase YP_388936.2 SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: dvm:DvMF_3084 ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core YP_388937.1 KEGG: dma:DMR_39120 hypothetical protein YP_388938.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: das:Daes_0230 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain YP_388939.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; PAS fold; Diguanylate cyclase, predicted; KEGG: dvl:Dvul_1867 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif; GAF YP_388940.1 PFAM: Uncharacterized protein family UPF0118; KEGG: dvm:DvMF_3082 protein of unknown function UPF0118 YP_388941.1 KEGG: dvm:DvMF_3081 hypothetical protein YP_388943.1 KEGG: dvm:DvMF_3080 hypothetical protein YP_388944.1 KEGG: dvm:DvMF_3079 hypothetical protein YP_388945.1 KEGG: dvu:DVU1186 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG, catalytic core YP_388946.1 PFAM: Colicin V production protein; KEGG: dvl:Dvul_1872 colicin V production protein YP_388947.1 KEGG: dvm:DvMF_3076 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: Metal-dependent phosphohydrolase, HD region YP_388948.1 SMART: PAS; GAF; KEGG: dvm:DvMF_3075 signal transduction histidine kinase regulating citrate/malate metabolism YP_388949.1 TIGRFAM: HDIG; PFAM: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: dvl:Dvul_1875 response regulator receiver modulated metal dependent phosphohydrolase; SMART: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region YP_388950.1 PFAM: ThiamineS; KEGG: dvl:Dvul_1876 thiamineS protein YP_388951.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: dvl:Dvul_2316 UBA/ThiF-type NAD/FAD binding protein YP_388952.1 PFAM: Aldehyde ferredoxin oxidoreductase, C-terminal; Aldehyde ferredoxin oxidoreductase, N-terminal; KEGG: dvl:Dvul_1877 aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase, N-terminal YP_388953.1 KEGG: dvl:Dvul_1878 hypothetical protein YP_388954.1 KEGG: dvm:DvMF_3070 hypothetical protein YP_388956.1 KEGG: dvl:Dvul_1881 hypothetical protein YP_388958.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase; KEGG: dsa:Desal_1399 FAD dependent oxidoreductase YP_388960.2 PFAM: Flagellin assembly, membrane protein MviN; KEGG: dvm:DvMF_3067 virulence factor MviN family protein YP_388962.1 KEGG: dsa:Desal_0862 hypothetical protein YP_388963.1 KEGG: dvl:Dvul_1902 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_388965.1 KEGG: dvl:Dvul_1196 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1 YP_388966.1 KEGG: dvl:Dvul_1195 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: Chaperonin Cpn10, subgroup YP_388968.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: dsa:Desal_2013 Na+/H+ antiporter NhaC YP_388969.1 KEGG: dvm:DvMF_3061 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_388970.1 KEGG: dvu:DVU1980 hypothetical protein YP_388971.1 PFAM: Protein of unknown function DUF520; KEGG: dvm:DvMF_3058 nucleotide-binding protein YP_388972.2 KEGG: dvu:DVU1982 ATP-dependent RNA helicase RhlE; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_388973.1 PFAM: Aminoglycoside phosphotransferase; KEGG: dvm:DvMF_3056 aminoglycoside phosphotransferase YP_388974.1 TIGRFAM: Peptide methionine sulphoxide reductase MsrA; KEGG: dvl:Dvul_1188 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA YP_388976.1 PFAM: Protein of unknown function DUF88; KEGG: dvm:DvMF_3051 protein of unknown function DUF88 YP_388978.1 KEGG: dsa:Desal_3420 excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter-like YP_388980.1 PFAM: Protein of unknown function DUF554; KEGG: dvm:DvMF_3049 protein of unknown function DUF554 YP_388982.2 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dsa:Desal_3556 LysR family transcriptional regulator YP_388983.1 KEGG: dsa:Desal_3555 hypothetical protein YP_388984.2 KEGG: din:Selin_1699 AAA family ATPase YP_388985.1 KEGG: din:Selin_1700 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; DNA primase, small subunit; SMART: DEAD-like helicase, N-terminal YP_388986.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: gpb:HDN1F_07100 hypothetical protein YP_388987.1 KEGG: cpc:Cpar_0962 hypothetical protein YP_388988.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: cph:Cpha266_1398 restriction modification system DNA specificity subunit YP_388989.1 KEGG: plt:Plut_0640 hypothetical protein YP_388990.1 KEGG: ppd:Ppro_0353 N-6 DNA methylase; PFAM: DNA methylase, adenine-specific YP_388991.1 PFAM: Restriction endonuclease, type I, EcoEI, R subunit/Type III, Res subunit, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; KEGG: ppd:Ppro_0352 EcoEI R domain-containing protein; SMART: DEAD-like helicase, N-terminal YP_388992.1 KEGG: din:Selin_1711 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_388993.1 KEGG: din:Selin_1712 hypothetical protein YP_388994.1 PFAM: Protein of unknown function DUF2179; KEGG: dps:DP2912 hypothetical protein YP_388998.1 KEGG: dvm:DvMF_1575 sulfate transporter; TIGRFAM: Sulphate anion transporter; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS YP_388999.1 KEGG: dba:Dbac_2235 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_389001.1 KEGG: dvm:DvMF_0694 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_389002.1 KEGG: dvm:DvMF_0694 protein of unknown function DUF1555; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial YP_389004.2 TIGRFAM: Prokaryotic transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: dvl:Dvul_0144 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic YP_389005.1 PFAM: Integrase, catalytic core; KEGG: dau:Daud_0321 integrase catalytic subunit YP_389007.1 PFAM: Protein of unknown function DUF401; KEGG: das:Daes_1056 hypothetical protein YP_389008.1 KEGG: dvm:DvMF_1041 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51 YP_389010.2 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; KEGG: dvl:Dvul_0418 diguanylate cyclase with PAS/PAC sensor; SMART: Diguanylate cyclase, predicted; PAC motif; PAS YP_389011.1 TIGRFAM: Zinc finger, C4 DksA/TraR-type; KEGG: dvl:Dvul_1677 TraR/DksA family transcriptional regulator YP_389012.2 PFAM: Protein of unknown function DUF2179; Protein of unknown function DUF161; KEGG: dba:Dbac_0209 protein of unknown function DUF161 YP_389013.1 PFAM: Protein of unknown function DUF1498; KEGG: dsa:Desal_0499 hypothetical protein YP_389014.1 PFAM: Carbohydrate/purine kinase; KEGG: dsa:Desal_0500 PfkB domain protein YP_389015.1 KEGG: tte:TTE1983 phosphatase/phosphohexomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_389016.1 PFAM: Nitroreductase-like; KEGG: dat:HRM2_10320 NfnB1 YP_389017.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dvm:DvMF_3034 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase YP_389020.2 KEGG: dvm:DvMF_3033 hypothetical protein YP_389022.1 TIGRFAM: Argininosuccinate lyase; KEGG: dvl:Dvul_1901 argininosuccinate lyase; PFAM: Fumarate lyase YP_389023.1 TIGRFAM: Argininosuccinate synthase; KEGG: dvm:DvMF_0047 argininosuccinate synthase; PFAM: Argininosuccinate synthase YP_389024.1 TIGRFAM: Ornithine carbamoyltransferase; KEGG: dvl:Dvul_1899 ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding YP_389025.1 KEGG: azl:AZL_008920 two-component response regulator; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_389026.1 PFAM: Glycosyl transferase, family 2; KEGG: ret:RHE_CH01521 glucosyltransferase YP_389027.2 PFAM: ApbE-like lipoprotein; KEGG: dvm:DvMF_0044 hypothetical protein YP_389028.1 KEGG: das:Daes_1846 hypothetical protein YP_389029.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dsa:Desal_1343 TetR family transcriptional regulator YP_389030.1 KEGG: dsa:Desal_1343 TetR family transcriptional regulator YP_389033.1 KEGG: tpr:Tpau_0881 hypothetical protein YP_389034.1 KEGG: dvu:DVU1713 hypothetical protein YP_389036.1 KEGG: dvm:DvMF_1065 hypothetical protein YP_004853791.1 KEGG: dvm:DvMF_1066 hypothetical protein YP_004849554.1 KEGG: dvm:DvMF_1068 hypothetical protein YP_389038.1 KEGG: dvl:Dvul_0649 hypothetical protein YP_389039.1 KEGG: dvm:DvMF_1070 hypothetical protein YP_389040.1 KEGG: dvl:Dvul_0647 hypothetical protein YP_389041.1 KEGG: dvm:DvMF_1072 hypothetical protein YP_389042.2 KEGG: dvm:DvMF_1073 hypothetical protein YP_389043.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: bph:Bphy_6050 lytic transglycosylase catalytic YP_389047.1 TIGRFAM: Phage uncharacterised protein, C-terminal; KEGG: dvl:Dvul_0639 hypothetical protein YP_389048.1 KEGG: dvm:DvMF_1107 hypothetical protein YP_389049.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; PAS fold; CHASE4; Diguanylate cyclase, predicted; KEGG: dvm:DvMF_1907 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS YP_389050.1 PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: das:Daes_2674 glycoside hydrolase 3 domain-containing protein YP_389051.1 KEGG: tma:TM0807 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal YP_389052.1 KEGG: dvl:Dvul_1199 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_389053.1 KEGG: dvu:DVU1974 pyridine nucleotide-disulfide oxidoreductase; TIGRFAM: Pyridine nucleotide-disulfide oxidoreductase, N-terminal; PFAM: Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region; FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_389054.1 PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: dap:Dacet_1213 metal dependent phosphohydrolase YP_389055.1 KEGG: dvl:Dvul_0626 hypothetical protein YP_389056.1 PFAM: Mechanosensitive ion channel MscS; KEGG: tgr:Tgr7_1533 MscS mechanosensitive ion channel YP_389057.2 KEGG: dvm:DvMF_1076 dienelactone hydrolase-like protein YP_389058.1 KEGG: hau:Haur_1275 hypothetical protein YP_389059.2 KEGG: dvl:Dvul_0627 hypothetical protein YP_004849556.1 KEGG: dvm:DvMF_1079 hypothetical protein YP_389060.1 KEGG: dvm:DvMF_1078 hypothetical protein YP_389063.1 KEGG: dvm:DvMF_1087 hypothetical protein YP_389064.1 KEGG: dvl:Dvul_2125 lipoprotein YP_389066.1 KEGG: dvm:DvMF_2903 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_389067.1 KEGG: dvu:DVU0856 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase YP_389068.2 KEGG: dvl:Dvul_2128 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_389069.1 SMART: Transcription regulator, AsnC-type; KEGG: dvl:Dvul_2129 AsnC family transcriptional regulator YP_389070.2 KEGG: dsa:Desal_1386 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR YP_389071.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: dvl:Dvul_0605 Na+/H+ antiporter NhaC YP_389072.1 TIGRFAM: Pyridoxal phosphate-dependent deaminase; KEGG: dsa:Desal_1391 D-cysteine desulfhydrase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_389073.1 KEGG: dvl:Dvul_0603 endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP YP_389075.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: swd:Swoo_1419 hypothetical protein YP_389076.1 KEGG: dvl:Dvul_0949 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling YP_389082.1 KEGG: dvm:DvMF_0918 hypothetical protein YP_389083.1 KEGG: dvl:Dvul_0780 hypothetical protein YP_389084.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_0920 binding-protein-dependent transport systems inner membrane component YP_389085.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_0921 binding-protein-dependent transport systems inner membrane component YP_389087.1 PFAM: RecF/RecN/SMC protein, N-terminal; KEGG: dvm:DvMF_0923 SMC domain protein YP_389088.1 KEGG: dvm:DvMF_0924 hypothetical protein YP_389089.1 SMART: Cold shock protein; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; KEGG: dvl:Dvul_0774 ribonuclease R; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribosomal protein S1, RNA binding domain YP_389091.1 TIGRFAM: Tetraacyldisaccharide 4'-kinase; KEGG: dvm:DvMF_0926 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase YP_389092.1 PFAM: Uncharacterized protein family UPF0005; KEGG: dvm:DvMF_0927 protein of unknown function UPF0005 YP_389093.1 KEGG: dvl:Dvul_2357 hypothetical protein YP_389094.1 KEGG: dvl:Dvul_0769 glycoside hydrolase YP_389095.1 PFAM: Cystathionine beta-synthase, core; KEGG: dvl:Dvul_0728 XRE family transcriptional regulator YP_389096.1 KEGG: dvl:Dvul_0727 hypothetical protein YP_389098.1 KEGG: dvm:DvMF_0969 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13 YP_389099.1 PFAM: Ribosomal protein S9; KEGG: dvm:DvMF_0970 30S ribosomal protein S9 YP_389100.1 PFAM: Shikimate kinase; KEGG: dvl:Dvul_0723 shikimate kinase YP_389101.1 KEGG: dvm:DvMF_0972 hypothetical protein YP_389102.1 KEGG: dvm:DvMF_0973 lipoprotein YP_389104.1 KEGG: dvm:DvMF_0974 transcriptional regulator, MucR family YP_389106.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region; Asn/Gln amidotransferase; KEGG: dvm:DvMF_0578 aspartyl/glutamyl-tRNA amidotransferase subunit B; SMART: Asn/Gln amidotransferase YP_389107.2 KEGG: dvm:DvMF_0579 hypothetical protein YP_389108.1 KEGG: dvl:Dvul_1277 hypothetical protein YP_389109.1 PFAM: ATP-NAD/AcoX kinase; KEGG: dvm:DvMF_0581 ATP-NAD/AcoX kinase YP_389110.2 KEGG: dvm:DvMF_0582 phosphoheptose isomerase; HAMAP: Phosphoheptose isomerase; PFAM: Sugar isomerase (SIS) YP_389111.1 TIGRFAM: Regulatory protein, FmdB, PFAM: Regulatory protein, FmdB, KEGG: drt:Dret_0687 regulatory protein, FmdB family; SMART: Regulatory protein, FmdB YP_389112.1 KEGG: dvl:Dvul_1273 porphobilinogen deaminase; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase YP_389113.1 KEGG: aha:AHA_1230 ABC-type sugar transport system, ATPase component YP_389114.1 PFAM: Protein of unknown function DUF2219; KEGG: dvm:DvMF_0587 hypothetical protein YP_389115.2 PFAM: Protein of unknown function DUF2064; KEGG: dvu:DVU1891 hypothetical protein YP_389116.1 PFAM: Glycosyl transferase, family 2; KEGG: dvu:DVU1892 glycosyl transferase group 2 family protein YP_389117.1 KEGG: dvl:Dvul_1270 peptidase S16, lon domain-containing protein YP_389118.1 KEGG: dvu:DVU0064 hypothetical protein YP_389121.2 HAMAP: Phosphoglycerate kinase; KEGG: dvl:Dvul_0716 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_389122.1 SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: dvm:DvMF_0976 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_389123.1 TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: dvl:Dvul_0714 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase YP_389124.1 KEGG: dvl:Dvul_0713 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_389125.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: dvl:Dvul_0712 phenylalanyl-tRNA synthetase subunit beta YP_389126.1 KEGG: dvl:Dvul_0711 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal YP_389127.1 KEGG: dvl:Dvul_0710 50S ribosomal protein L20; TIGRFAM: Ribosomal protein L20; PFAM: Ribosomal protein L20 YP_389128.1 KEGG: dvl:Dvul_0709 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35; PFAM: Ribosomal protein L35 YP_389129.3 TIGRFAM: Translation initiation factor 3; HAMAP: Translation initiation factor IF-3; KEGG: dvl:Dvul_0708 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal YP_389130.1 KEGG: dvm:DvMF_0984 threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; Anticodon-binding YP_389132.3 KEGG: dvm:DvMF_0988 hydroxylamine reductase; TIGRFAM: Hybrid cluster protein; PFAM: Prismane YP_389133.2 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_0703 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_389134.1 PFAM: UspA; KEGG: drt:Dret_1199 bile acid:sodium symporter YP_389135.2 KEGG: dvm:DvMF_0993 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp YP_389136.1 KEGG: dvm:DvMF_0994 hypothetical protein YP_389137.1 KEGG: drt:Dret_2266 hypothetical protein; TIGRFAM: Uncharacterized protein family UPF0066; PFAM: Uncharacterized protein family UPF0066 YP_389138.1 KEGG: dvm:DvMF_1115 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_389139.1 TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: dvu:DVU2552 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_389141.1 PFAM: Uncharacterized conserved protein UCP018688; KEGG: dvl:Dvul_0694 hypothetical protein YP_389142.1 KEGG: dvu:DVU2555 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein MatE YP_389145.1 KEGG: dvm:DvMF_1000 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11; Biotin protein ligase, C-terminal YP_389146.1 SMART: Biotin/thiamin synthesis-associated protein; Elongator protein 3/MiaB/NifB; TIGRFAM: Biotin synthase; KEGG: dvl:Dvul_0690 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM YP_389147.1 TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; KEGG: dvm:DvMF_1002 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III YP_389148.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: din:Selin_0491 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_389149.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dvm:DvMF_1004 short-chain dehydrogenase/reductase SDR YP_389150.1 PFAM: Phosphopantetheine-binding; KEGG: dvl:Dvul_0686 acyl carrier protein YP_389151.2 KEGG: dvm:DvMF_1006 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal YP_389152.1 KEGG: dvm:DvMF_1007 hypothetical protein YP_389153.1 KEGG: dvm:DvMF_1008 aminotransferase class I and II; PFAM: Aminotransferase, class I/II YP_389154.1 TIGRFAM: Dethiobiotin synthase; KEGG: dvu:DVU2565 dethiobiotin synthetase YP_389155.1 TIGRFAM: Diaminopimelate decarboxylase; KEGG: dvu:DVU2566 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_389156.1 PFAM: Transcriptional regulator TrmB; KEGG: dvl:Dvul_0680 TrmB family transcriptional regulator YP_389158.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: dvm:DvMF_1012 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_389159.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: dvm:DvMF_1013 peptidylprolyl isomerase FKBP-type YP_389160.1 KEGG: dvm:DvMF_1015 ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal YP_389161.1 KEGG: dvm:DvMF_1016 FeoA family protein; PFAM: Ferrous iron transporter, FeoA subunit; SMART: Ferrous iron transporter, FeoA subunit YP_389163.1 KEGG: dvm:DvMF_1017 hypothetical protein YP_389164.1 KEGG: dvl:Dvul_0673 FeoA family protein; PFAM: Ferrous iron transporter, FeoA subunit; SMART: Ferrous iron transporter, FeoA subunit YP_389165.1 KEGG: dvl:Dvul_0670 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_389166.1 PFAM: Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_389167.1 PFAM: Ferric-uptake regulator; KEGG: dvl:Dvul_2043 ferric uptake regulator family protein YP_389168.2 PFAM: Peptidase M16C associated; Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: dvm:DvMF_1365 peptidase M16C associated domain protein YP_389171.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dvm:DvMF_1366 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_389172.1 KEGG: dvl:Dvul_2046 hypothetical protein YP_389173.1 PFAM: Glycoside hydrolase, family 13, N-terminal; KEGG: dvl:Dvul_2047 isoamylase N-terminal domain-containing protein YP_389175.1 TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: dvl:Dvul_2049 DNA binding domain-containing protein YP_389176.1 KEGG: dvm:DvMF_1369 hypothetical protein YP_389178.1 KEGG: dvm:DvMF_1375 histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-4; SMART: ATP-binding region, ATPase-like; PAS YP_389179.1 TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: dvl:Dvul_2054 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_389180.1 TIGRFAM: Glutamate 5-kinase, ProB-related; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; KEGG: dvm:DvMF_1377 gamma-glutamyl kinase; SMART: Pseudouridine synthase/archaeosine transglycosylase YP_389181.2 TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTPase obg; KEGG: dvl:Dvul_2056 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related YP_389182.1 KEGG: drt:Dret_2181 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; PFAM: Ribosomal protein L27 YP_389183.2 KEGG: dvl:Dvul_2058 50S ribosomal protein L21; TIGRFAM: Ribosomal protein L21; PFAM: Ribosomal protein L21 YP_389184.1 TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: dvm:DvMF_1381 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_004849557.1 KEGG: dvm:DvMF_1382 hypothetical protein YP_389186.1 KEGG: dvm:DvMF_1383 RNA methyltransferase, TrmA family; TIGRFAM: 23S rRNA methyltransferase/RumA; PFAM: Deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase YP_389189.1 KEGG: dvl:Dvul_2064 ATP synthase I YP_389190.1 KEGG: dvl:Dvul_2065 hypothetical protein YP_389191.1 KEGG: dvm:DvMF_1388 ATP synthase F0, A subunit; TIGRFAM: ATPase, F0 complex, subunit A; PFAM: ATPase, F0 complex, subunit A YP_389192.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: dvl:Dvul_2067 ATP synthase F0, C subunit; PFAM: ATPase, F0/V0 complex, subunit C YP_389193.1 KEGG: dvl:Dvul_2068 redox-sensing transcriptional repressor REX; PFAM: CoA-binding; Rex DNA-binding, C-terminal; SMART: CoA-binding YP_389194.1 PFAM: Protein of unknown function DUF62; KEGG: dvm:DvMF_1391 protein of unknown function DUF62 YP_389195.1 PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; KEGG: dvm:DvMF_1392 cobalamin-5-phosphate synthase CobS YP_389196.1 TIGRFAM: Flagellar export FliJ; KEGG: dvm:DvMF_1393 flagellar export protein FliJ YP_389197.2 KEGG: dvl:Dvul_2072 hypothetical protein YP_389198.1 TIGRFAM: Pseudouridine synthase I, TruA; KEGG: dvm:DvMF_1395 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_389199.1 KEGG: dvm:DvMF_1396 flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA) YP_389202.1 KEGG: dvu:DVU0908 iron-sulfur cluster-binding protein YP_389203.1 PFAM: Ribosomal protein Rsm22, bacterial-type; KEGG: dvm:DvMF_1399 ribosomal small subunit Rsm22 YP_389204.1 TIGRFAM: Octanoyltransferase; KEGG: dvm:DvMF_1400 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase YP_389205.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Lipoate synthase; KEGG: dsa:Desal_3025 lipoyl synthase; PFAM: Radical SAM YP_389206.1 KEGG: dvm:DvMF_1134 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1 YP_389207.2 PFAM: Metal-dependent hydrolase HDOD; KEGG: dvl:Dvul_2081 metal dependent phosphohydrolase YP_389208.1 PFAM: Tetratricopeptide TPR-1; KEGG: dvm:DvMF_1136 tetratricopeptide domain protein YP_389209.1 TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 1, core; KEGG: dvl:Dvul_2083 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core YP_389210.1 SMART: Guanylate kinase/L-type calcium channel region; TIGRFAM: Guanylate kinase, sub-group; KEGG: dvm:DvMF_1138 guanylate kinase; PFAM: Guanylate kinase YP_389211.1 PFAM: Protein of unknown function DUF370; KEGG: das:Daes_2314 hypothetical protein YP_389212.1 PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732; KEGG: dvl:Dvul_2086 hypothetical protein YP_389213.1 TIGRFAM: Methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; KEGG: dvl:Dvul_2087 RNA modification protein; SMART: Elongator protein 3/MiaB/NifB YP_389215.1 PFAM: NLP/P60; KEGG: dvl:Dvul_2088 NLP/P60 protein YP_389216.1 TIGRFAM: DNA helicase, RecD/TraA type; KEGG: dvl:Dvul_2089 RecD/TraA family helicase; SMART: ATPase, AAA+ type, core; Helix-hairpin-helix DNA-binding motif, class 1 YP_389217.1 TIGRFAM: Chorismate synthase; KEGG: dvu:DVU0894 chorismate synthase; PFAM: Chorismate synthase YP_389218.1 PFAM: UspA; KEGG: dvm:DvMF_1409 UspA domain protein YP_389219.2 HAMAP: Shikimate kinase; KEGG: dvl:Dvul_2092 shikimate kinase II; PFAM: Shikimate kinase YP_389220.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dsa:Desal_3720 major facilitator superfamily MFS_1 YP_389221.1 KEGG: dvl:Dvul_2093 aminotransferase, class I and II; PFAM: Aminotransferase, class I/II YP_389222.1 PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; KEGG: dvm:DvMF_1412 homoserine dehydrogenase YP_389223.1 KEGG: dvm:DvMF_1414 phosphoglycerate mutase; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Metalloenzyme YP_389224.2 PFAM: MltA; 3D; KEGG: dvu:DVU0887 transglycosylase YP_389225.1 KEGG: dvl:Dvul_2947 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache, type 2; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_389226.1 KEGG: dvm:DvMF_1421 thioesterase superfamily protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily YP_389227.1 PFAM: Amidohydrolase 2; KEGG: dvm:DvMF_1422 amidohydrolase 2 YP_389229.1 PFAM: Ferredoxin thioredoxin reductase, beta subunit; KEGG: dvm:DvMF_2934 hypothetical protein YP_389230.1 PFAM: Glutaredoxin; KEGG: dvm:DvMF_2933 glutaredoxin YP_389231.1 KEGG: dvm:DvMF_2932 hypothetical protein YP_389232.1 TIGRFAM: Small GTP-binding protein; PFAM: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFTu/EF1A, domain 2; Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, C-terminal; KEGG: dvm:DvMF_2931 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_389233.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dvu:DVU0769 pyridoxamine kinase YP_389234.1 TIGRFAM: Glutamate racemase; KEGG: dvl:Dvul_2202 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_389235.1 KEGG: dvm:DvMF_2809 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_389238.1 TIGRFAM: Protein of unknown function DUF160; KEGG: kol:Kole_1669 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM YP_389240.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dat:HRM2_41980 Hbr3 YP_389241.1 PFAM: Transport-associated; KEGG: dal:Dalk_2148 transport-associated protein YP_389242.2 KEGG: dvm:DvMF_2801 hydroxypyruvate reductase; PFAM: MOFRL YP_389243.1 KEGG: dvm:DvMF_2799 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_389244.1 KEGG: dvm:DvMF_2798 transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding; SMART: Bacterial transcription activator, effector binding YP_389245.1 KEGG: dvm:DvMF_2797 hypothetical protein YP_389246.1 PFAM: Tetratricopeptide TPR-1; KEGG: dvl:Dvul_2211 tetratricopeptide domain-containing protein YP_389249.1 PFAM: Peptidase M29, aminopeptidase II; KEGG: dvm:DvMF_2795 peptidase M29 aminopeptidase II YP_389250.1 KEGG: dvl:Dvul_2213 hypothetical protein YP_389251.1 PFAM: Type IV pilus assembly PilZ; KEGG: dvl:Dvul_2214 type IV pilus assembly PilZ YP_389252.1 PFAM: Tetratricopeptide TPR-1; KEGG: dvm:DvMF_2790 tetratricopeptide TPR_2 repeat protein YP_389253.2 KEGG: dvm:DvMF_2789 histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_389254.1 PFAM: ABC transporter-like; KEGG: dvm:DvMF_2788 ABC transporter related; SMART: ATPase, AAA+ type, core YP_389255.1 KEGG: dvm:DvMF_2787 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_389256.1 KEGG: dvu:DVU0751 His/Glu/Gln/Arg/opine ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_389257.1 PFAM: Glycosyl transferase, group 1; KEGG: das:Daes_2652 group 1 glycosyl transferase YP_389258.1 TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; KEGG: dba:Dbac_1966 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_389259.1 PFAM: Extracellular ligand-binding receptor; KEGG: sfu:Sfum_2306 extracellular ligand-binding receptor YP_389260.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; PAS fold-3; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: sfu:Sfum_2304 multi-sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_389261.1 KEGG: dvm:DvMF_2749 hypothetical protein YP_389262.1 KEGG: dma:DMR_26610 Na+/H+ antiporter; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA YP_389263.1 PFAM: Protein of unknown function DUF23; KEGG: dba:Dbac_0115 protein of unknown function DUF23 YP_389264.1 PFAM: Magnesium chelatase, ChlI subunit; KEGG: dvl:Dvul_2256 Mg chelatase, subunit ChlI YP_389265.2 PFAM: Recombinase; Resolvase, N-terminal; KEGG: dvm:DvMF_2727 recombinase YP_389267.2 KEGG: das:Daes_0503 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_389268.1 PFAM: Protein of unknown function DUF318, transmembrane; KEGG: pca:Pcar_0049 permease YP_389269.1 TIGRFAM: Redox-active disulfide protein 2; KEGG: dsa:Desal_2205 redox-active disulfide protein 2 YP_004849558.1 PFAM: DGC; KEGG: das:Daes_0506 DGC domain-containing protein YP_389272.2 PFAM: Thioredoxin domain; KEGG: das:Daes_0507 thioredoxin domain-containing protein YP_389273.1 PFAM: Cytochrome c assembly protein, transmembrane region; KEGG: dba:Dbac_1909 cytochrome c biogenesis protein transmembrane region YP_389274.1 KEGG: das:Daes_0509 rhodanese domain-containing protein YP_389277.1 SMART: Rhodanese-like; KEGG: dat:HRM2_16100 rhodanese-like domain family protein YP_389278.1 PFAM: Protein of unknown function DUF81; KEGG: dat:HRM2_16110 permease YP_004849559.1 KEGG: dsa:Desal_1109 hypothetical protein YP_004849560.1 KEGG: dsa:Desal_2202 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_389282.1 KEGG: dsa:Desal_2201 arsenical-resistance protein; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter YP_389283.1 SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: das:Daes_1099 protein-tyrosine phosphatase, low molecular weight YP_389284.1 KEGG: dsa:Desal_2313 protein-tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_389286.1 PFAM: BRO, N-terminal; KEGG: bbp:BBPR_0883 phage antirepressor protein YP_389287.1 PFAM: Phage P22, antirepressor protein, N-terminal; KEGG: lhk:LHK_01530 antirepressor protein YP_389289.1 PFAM: Heat shock protein Hsp20; KEGG: sfu:Sfum_2860 heat shock protein HSP20 YP_389290.1 KEGG: efa:EF2037 antirepressor, TIGRFAM: Phage regulatory protein, Rha; PFAM: Phage regulatory protein, Rha-like YP_389291.1 PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: bpb:bpr_IV096 restriction endonuclease YP_389293.1 KEGG: dar:Daro_3523 resolvase, N-terminal:resolvase helix-turn-helix region; PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix region; SMART: Resolvase, N-terminal YP_389295.1 PFAM: BRO, N-terminal; KEGG: amu:Amuc_1367 prophage antirepressor YP_389296.2 KEGG: dba:Dbac_0897 phage regulatory protein, Rha family; TIGRFAM: Phage regulatory protein, Rha; PFAM: Phage regulatory protein, Rha-like YP_389297.1 PFAM: Staphylococcal nuclease (SNase-like); KEGG: vok:COSY_0067 nuclease YP_389298.1 PFAM: Magnesium chelatase, ChlI subunit; KEGG: dvm:DvMF_2719 competence protein ComM YP_389299.1 KEGG: dap:Dacet_1948 hypothetical protein YP_389304.1 TIGRFAM: Haemerythrin-like, metal-binding; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; Haemerythrin/HHE cation-binding motif; KEGG: das:Daes_1051 hemerythrin-like metal-binding protein; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_389306.1 TIGRFAM: Peptidase S26A, signal peptidase I; KEGG: dvl:Dvul_2260 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_389307.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: dvm:DvMF_2717 GTP-binding protein LepA; SMART: Translation elongation factor EFG/EF2, C-terminal YP_389309.1 KEGG: dvu:DVU3384 zinc resistance-associated protein YP_389310.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: dma:DMR_01870 arsenate reductase; SMART: Protein-tyrosine phosphatase, low molecular weight YP_389312.1 KEGG: dvl:Dvul_2221 response regulator receiver protein; PFAM: LytTr DNA-binding region; SMART: LytTr DNA-binding region; Signal transduction response regulator, receiver region YP_389313.1 TIGRFAM: Acetate--CoA ligase; KEGG: dvm:DvMF_2783 acetate/CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_389315.1 KEGG: dvl:Dvul_2226 sigma-54 dependent trancsriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold-4; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; PAS; ATPase, AAA+ type, core YP_389316.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; PAS fold-4; KEGG: dvm:DvMF_2778 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_389317.1 KEGG: dvl:Dvul_2228 UspA domain-containing protein YP_389318.1 KEGG: dvm:DvMF_2776 hypothetical protein YP_389319.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dvl:Dvul_2230 major facilitator superfamily transporter YP_389320.1 KEGG: dma:DMR_28890 hypothetical protein; TIGRFAM: AMMECR1; PFAM: AMMECR1 YP_389321.1 PFAM: Extracellular ligand-binding receptor; KEGG: dvm:DvMF_2773 extracellular ligand-binding receptor YP_389322.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_2772 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; HAMP linker domain YP_389323.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dvm:DvMF_2771 lysine exporter protein (LysE/YggA) YP_389324.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ppr:PBPRA2834 LysR family transcriptional regulator YP_389325.1 TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: dvl:Dvul_2234 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal YP_389326.2 PFAM: Molybdenum cofactor sulfurase, C-terminal; KEGG: dvm:DvMF_2768 MOSC domain containing protein YP_389327.1 TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: dvl:Dvul_2236 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; Tetrapyrrole biosynthesis, uroporphyrinogen III synthase YP_389329.1 TIGRFAM: Valyl-tRNA synthetase, class Ia; KEGG: dvm:DvMF_2765 valyl-tRNA synthetase YP_389330.2 KEGG: dvm:DvMF_2764 hypothetical protein YP_389331.1 PFAM: Protein of unknown function DUF1848; KEGG: dvl:Dvul_2240 hypothetical protein YP_389332.1 KEGG: das:Daes_2194 hypothetical protein YP_389333.1 KEGG: dvl:Dvul_2241 hypothetical protein YP_389334.2 PFAM: Queuine/other tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: dvl:Dvul_2243 queuine tRNA-ribosyltransferase YP_389336.1 PFAM: Protein of unknown function DUF218; KEGG: dsa:Desal_2506 hypothetical protein YP_389338.1 KEGG: dvm:DvMF_2759 protein of unknown function DUF255 YP_389339.1 PFAM: Transposase, IS4-like; KEGG: pgi:PG0461 ISPg7, transposase YP_389340.1 KEGG: dvm:DvMF_2759 protein of unknown function DUF255 YP_389342.1 KEGG: dvl:Dvul_2245 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_389343.1 KEGG: dvl:Dvul_0612 hypothetical protein YP_389344.1 KEGG: dvm:DvMF_3044 hypothetical protein YP_389345.1 PFAM: Sulphate transporter; KEGG: dat:HRM2_13280 SulP1 YP_389346.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dvm:DvMF_3043 protein of unknown function DUF6 transmembrane YP_389347.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-4; HAMP linker domain; KEGG: dvm:DvMF_2712 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling; PAC motif; HAMP linker domain YP_389348.1 KEGG: dvm:DvMF_2711 cytochrome c family protein YP_389349.1 PFAM: Integrase, catalytic core; KEGG: dau:Daud_0321 integrase catalytic subunit YP_389352.1 KEGG: das:Daes_2747 hypothetical protein YP_389355.1 PFAM: Integrase, catalytic core, phage; KEGG: dma:DMR_07170 site-specific recombinase YP_389356.2 KEGG: pin:Ping_1894 hypothetical protein YP_389357.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: glo:Glov_2140 filamentation induced by cAMP protein Fic YP_389358.1 PFAM: DNA methylase, adenine-specific; KEGG: kpn:KPN_pKPN4p07086 type I restriction-modification system DNA methylase YP_389359.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: pap:PSPA7_0076 type I restriction-modification system subunit S YP_389360.1 KEGG: kpn:KPN_pKPN4p07084 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal YP_389361.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: kpn:KPN_pKPN4p07083 transposase YP_389365.2 KEGG: dvm:DvMF_2698 methyltransferase FkbM family YP_389366.2 PFAM: Glycosyl transferase, family 2; KEGG: rpt:Rpal_4471 glycosyl transferase 2 YP_389367.1 PFAM: Glycosyl transferase, family 11; KEGG: dvm:DvMF_2699 glycosyl transferase 11 YP_389368.1 PFAM: Protein of unknown function DUF268, Caenorhabditis species; KEGG: glo:Glov_2749 protein of unknown function DUF268 YP_389369.2 PFAM: Glycosyl transferase, family 2; KEGG: sus:Acid_0612 glycosyl transferase YP_389370.1 PFAM: Methyltransferase type 11; KEGG: dba:Dbac_3286 methyltransferase type 11 YP_389371.1 KEGG: plt:Plut_1849 acetyltransferase YP_389372.1 KEGG: plt:Plut_1850 hypothetical protein YP_389373.1 KEGG: dba:Dbac_3282 sugar transferase YP_389375.1 PFAM: Glycosyl transferase, group 1; KEGG: sus:Acid_6620 glycosyl transferase, group 1 YP_389376.1 TIGRFAM: Methyltransferase FkbM; KEGG: hhe:HH0182 hypothetical protein YP_389377.2 PFAM: Glycosyl transferase, group 1; KEGG: dba:Dbac_3288 glycosyl transferase group 1 YP_389378.1 KEGG: dba:Dbac_3287 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_389379.1 PFAM: Glycosyl transferase, family 2; KEGG: dba:Dbac_3281 glycosyl transferase 2 YP_389380.2 PFAM: Glycosyl transferase, group 1; KEGG: gbm:Gbem_3442 group glycosyltransferase YP_389381.1 TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: nhl:Nhal_3235 exosortase 1 system-associated amidotransferase 1; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_389382.1 PFAM: Methyltransferase type 11; KEGG: ppd:Ppro_1423 methyltransferase type 11 YP_389383.1 KEGG: dfe:Dfer_1961 O-methyltransferase 3 YP_389384.2 KEGG: ret:RHE_CH00769 lipolysaccharide tri-O-methyl-fucosylation protein (SAM-dependent methyltransferase); TIGRFAM: Methyltransferase FkbM; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_389385.2 PFAM: ABC transporter-like; KEGG: geb:GM18_2481 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_389386.2 PFAM: ABC-2 type transporter; KEGG: cyj:Cyan7822_5719 ABC-2 type transporter YP_389390.3 KEGG: dvm:DvMF_2695 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_389391.1 TIGRFAM: GDP-mannose 4,6-dehydratase; KEGG: dba:Dbac_2561 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_389393.1 PFAM: Plasmid stabilisation system; KEGG: alv:Alvin_3289 plasmid stabilization system YP_389394.1 KEGG: rlg:Rleg_6360 transcriptional regulator, CopG family YP_389396.1 PFAM: Transposase IS3/IS911; KEGG: dsa:Desal_3639 transposase IS3/IS911 family protein YP_389397.1 KEGG: gme:Gmet_3281 transposase/IS protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_389398.1 PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix region; KEGG: gme:Gmet_3282 integrase catalytic subunit YP_389399.1 KEGG: dak:DaAHT2_1799 addiction module antidote protein, CopG/Arc/MetJ family; TIGRFAM: addiction module antidote protein, CC2985; PFAM: addiction module antidote protein, CC2985 YP_389400.1 PFAM: Plasmid stabilisation system; KEGG: vsp:VS_1444 addiction module toxin YP_004849561.1 KEGG: sfu:Sfum_2425 hypothetical protein YP_389404.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: dhd:Dhaf_0086 filamentation induced by cAMP protein Fic YP_389406.1 KEGG: dvl:Dvul_2576 hypothetical protein YP_389409.1 SMART: von Willebrand factor, type A; KEGG: dvl:Dvul_2614 von Willebrand factor type A YP_389410.1 KEGG: dvl:Dvul_2612 hypothetical protein YP_389411.1 KEGG: dvl:Dvul_2608 ATPase; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core YP_389412.1 KEGG: dvu:DVU2033 hypothetical protein YP_389413.1 PFAM: ERF; KEGG: dvu:DVU2032 ERF family protein YP_389418.2 KEGG: dvm:DvMF_2693 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_389419.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: dvm:DvMF_2692 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_389420.1 TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: dvm:DvMF_2691 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase YP_389421.1 KEGG: dvm:DvMF_2690 hypothetical protein YP_389422.2 PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; KEGG: dvl:Dvul_2269 molybdopterin oxidoreductase YP_389423.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_2270 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_389424.1 KEGG: dvm:DvMF_2687 polysulphide reductase NrfD YP_389428.1 KEGG: dvl:Dvul_2272 hypothetical protein YP_389429.1 PFAM: Type IV pilus assembly PilZ; KEGG: dvm:DvMF_2668 type IV pilus assembly PilZ YP_389430.2 HAMAP: Ribonuclease H; KEGG: dvm:DvMF_2669 ribonuclease H; PFAM: Ribonuclease H YP_389431.1 KEGG: dvm:DvMF_2670 hypothetical protein YP_389432.1 PFAM: Aldehyde ferredoxin oxidoreductase, C-terminal; Aldehyde ferredoxin oxidoreductase, N-terminal; KEGG: dvl:Dvul_2276 aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase, N-terminal YP_389433.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvm:DvMF_2672 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_389434.1 PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: dvm:DvMF_2673 phosphomannomutase YP_389435.1 TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: dvl:Dvul_2279 HflK protein; SMART: Band 7 protein YP_389436.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: dvl:Dvul_2280 HflC protein; SMART: Band 7 protein YP_389438.1 PFAM: Bacteriophage CI repressor; KEGG: dvm:DvMF_2676 phage repressor YP_389439.1 TIGRFAM: PAS; PFAM: Extracellular solute-binding protein, family 3; PAS fold; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dsa:Desal_2320 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: Extracellular solute-binding protein, family 3; ATP-binding region, ATPase-like; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_389440.1 KEGG: dvm:DvMF_2678 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_389441.1 KEGG: dvm:DvMF_2679 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_389442.1 KEGG: dvm:DvMF_1317 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_389443.1 PFAM: BioY protein; KEGG: dvl:Dvul_0476 BioY protein YP_389444.1 PFAM: Methyltransferase-16, KEGG: dvl:Dvul_0475 hypothetical protein YP_389445.1 PFAM: Transcription factor, NikR, nickel binding C-terminal; CopG-like DNA-binding; KEGG: dvl:Dvul_0474 nickel responsive regulator YP_389446.1 KEGG: dvl:Dvul_0473 GTP cyclohydrolase; PFAM: Protein of unknown function DUF198 YP_389447.1 PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal; KEGG: dvl:Dvul_0472 hypothetical protein YP_389448.1 KEGG: dvm:DvMF_1324 sigma54 specific transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_389449.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: dvm:DvMF_1325 TPR repeat-containing protein YP_389450.1 PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related; KEGG: dma:DMR_31670 hypothetical protein YP_389451.1 KEGG: dvm:DvMF_1423 hypothetical protein YP_389452.2 KEGG: dvu:DVU2900 amidohydrolase; PFAM: Amidohydrolase 1 YP_389453.1 TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; KEGG: dvm:DvMF_1425 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region YP_389454.1 KEGG: dvl:Dvul_0463 dihydroorotase, multifunctional complex type; TIGRFAM: Dihydroorotase multifunctional complex type; PFAM: Amidohydrolase 1 YP_389455.1 PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: dvm:DvMF_1427 metal dependent phosphohydrolase YP_389456.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; PFAM: Radical SAM; KEGG: dvl:Dvul_0461 ribosomal RNA large subunit methyltransferase N; SMART: Elongator protein 3/MiaB/NifB YP_389457.1 KEGG: dvm:DvMF_1501 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_389461.1 KEGG: dvm:DvMF_1432 hypothetical protein YP_389462.2 KEGG: dvu:DVU2906 UmuC protein; PFAM: DNA-repair protein, UmuC-like YP_389463.2 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: dvl:Dvul_0458 prophage repressor YP_389464.1 KEGG: dvm:DvMF_1436 hypothetical protein YP_389465.1 KEGG: dsa:Desal_3517 hypothetical protein YP_389466.1 KEGG: dsa:Desal_3516 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_389467.1 PFAM: Protein of unknown function DUF204; KEGG: dvl:Dvul_0455 hypothetical protein YP_389468.1 PFAM: Carbonic anhydrase; KEGG: pca:Pcar_2939 carbonic anhydrase YP_389470.1 KEGG: dvl:Dvul_0454 hemolysin A; TIGRFAM: Haemolysin A; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 YP_389471.1 KEGG: dvm:DvMF_1442 50S ribosomal protein L31; TIGRFAM: Ribosomal protein L31; PFAM: Ribosomal protein L31 YP_389472.2 PFAM: Protein of unknown function DUF1385; KEGG: dvl:Dvul_0452 lipoprotein YP_389473.1 KEGG: dvl:Dvul_0451 peptide chain release factor 1; TIGRFAM: Peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor YP_389474.1 KEGG: dma:DMR_31270 protein methyltransferase HemK; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small YP_389475.1 KEGG: dvl:Dvul_0449 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase YP_389477.2 PFAM: Integrase, catalytic core; KEGG: swd:Swoo_3827 hypothetical protein YP_389478.1 KEGG: dvl:Dvul_0447 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, C-terminal; Translation elongation factor EFTu/EF1A, domain 2 YP_004849562.1 TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: dvl:Dvul_0446 50S ribosomal protein L33; PFAM: Ribosomal protein L33 YP_389479.1 KEGG: dvm:DvMF_1449 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein secE/sec61-gamma protein YP_389480.1 TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: dvm:DvMF_1450 NusG antitermination factor; SMART: Transcription antitermination protein, NusG, N-terminal; KOW YP_389481.1 TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal; Ribosomal protein L11, C-terminal; KEGG: lip:LI0933 50S ribosomal protein L11; SMART: Ribosomal protein L11 YP_389482.1 KEGG: dvm:DvMF_1452 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1 YP_389483.1 PFAM: Ribosomal protein L10; KEGG: dvm:DvMF_1453 50S ribosomal protein L10 YP_389484.1 KEGG: dvm:DvMF_1454 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal YP_389486.1 KEGG: dvu:DVU2928 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 7; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain YP_389487.1 TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 4; KEGG: dvm:DvMF_1456 DNA-directed RNA polymerase, beta' subunit; SMART: RNA polymerase, N-terminal YP_389488.2 KEGG: dvm:DvMF_1457 hypothetical protein YP_389489.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_1458 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif YP_389490.1 PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; KEGG: dvl:Dvul_0435 hypothetical protein YP_389491.1 TIGRFAM: PAS; HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Signal transduction response regulator, receiver region; PAS fold-4; KEGG: dvl:Dvul_0434 PAS/PAC sensor protein; SMART: Signal transduction response regulator, receiver region; PAS; Metal-dependent phosphohydrolase, HD region YP_389492.1 KEGG: dvm:DvMF_1461 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_389493.1 SMART: Phosphoglycerate mutase; TIGRFAM: Phosphoglycerate mutase 1; KEGG: dvm:DvMF_1462 phosphoglyceromutase; PFAM: Phosphoglycerate mutase YP_389494.1 PFAM: Ion transport; KEGG: pca:Pcar_0515 ion transport protein YP_389495.1 KEGG: dvm:DvMF_1463 response regulator receiver protein; PFAM: Tetratricopeptide TPR2; Signal transduction response regulator, receiver region; Tetratricopeptide TPR-1; SMART: Signal transduction response regulator, receiver region; Tetratricopeptide repeat YP_389496.1 PFAM: Protein of unknown function DUF39; KEGG: dvm:DvMF_1464 protein of unknown function DUF39 YP_389497.1 KEGG: dvu:DVU2939 hypothetical protein YP_004849563.1 KEGG: dvm:DvMF_1466 hypothetical protein YP_389499.1 TIGRFAM: Regulatory protein, FmdB, PFAM: Regulatory protein, FmdB, KEGG: drt:Dret_2465 regulatory protein, FmdB family; SMART: Regulatory protein, FmdB YP_389500.1 KEGG: dvm:DvMF_1468 adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal YP_389501.1 TIGRFAM: Orotate phosphoribosyl transferase; KEGG: dvm:DvMF_1469 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_389502.1 PFAM: YkuD domain; KEGG: dvm:DvMF_1470 ErfK/YbiS/YcfS/YnhG family protein YP_389503.1 KEGG: dsa:Desal_3226 hypothetical protein YP_389504.1 KEGG: dvm:DvMF_1472 hypothetical protein YP_389505.1 TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; KEGG: dvl:Dvul_0421 anaerobic ribonucleoside triphosphate reductase; PFAM: ATP-cone YP_389507.1 PFAM: Flagellin, N-terminal; KEGG: dvm:DvMF_1474 flagellin domain protein YP_389508.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dvu:DVU3081 hypothetical protein YP_389509.1 KEGG: dvu:DVU2309 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_389510.1 PFAM: Nitroreductase-like; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: drt:Dret_1631 nitroreductase YP_389511.2 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: dsa:Desal_0927 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_389512.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dae:Dtox_2803 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_389513.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_04843 histone acetyltransferase HPA2-like acetyltransferase YP_389514.1 KEGG: dvm:DvMF_1577 hypothetical protein YP_389516.1 KEGG: dsa:Desal_2509 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding YP_389517.1 TIGRFAM: Carbon-monoxide dehydrogenase, catalytic subunit; KEGG: das:Daes_0529 carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_389518.1 KEGG: das:Daes_0528 cobyrinic acid ac-diamide synthase YP_389519.1 KEGG: das:Daes_0632 hypothetical protein YP_389520.1 KEGG: das:Daes_0633 hypothetical protein YP_389521.1 KEGG: das:Daes_0634 hypothetical protein YP_389522.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: das:Daes_0635 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_389523.1 KEGG: das:Daes_0636 L-serine ammonia-lyase; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain YP_389524.1 TIGRFAM: Methyltransferase FkbM; KEGG: aeh:Mlg_0699 FkbM family methyltransferase YP_389525.1 PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: dba:Dbac_0902 protein of unknown function DUF21 YP_389527.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dal:Dalk_0185 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; PAC motif YP_389528.1 PFAM: Pyruvate formate-lyase, PFL; Formate C-acetyltransferase glycine radical; KEGG: pca:Pcar_0937 pyruvate-formate lyase YP_389529.1 KEGG: dap:Dacet_0801 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; SMART: ATPase, AAA+ type, core; Signal transduction response regulator, receiver region YP_389530.2 TIGRFAM: Protein of unknown function DUF160; KEGG: sfu:Sfum_0711 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM YP_389531.1 KEGG: sfu:Sfum_0712 D-alanine--D-alanine ligase domain-containing protein; PFAM: D-alanine--D-alanine ligase, C-terminal YP_389532.1 KEGG: sfu:Sfum_0713 D-alanine--D-alanine ligase domain-containing protein YP_389533.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psl:Psta_3376 GCN5-like N-acetyltransferase YP_389534.1 PFAM: Domain of unknown function DUF1987; KEGG: das:Daes_1898 hypothetical protein YP_389535.1 KEGG: das:Daes_1899 hypothetical protein YP_389536.1 KEGG: das:Daes_1900 stage II sporulation protein E; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related YP_389537.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; KEGG: das:Daes_1901 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; PAS YP_389540.1 KEGG: aoe:Clos_0085 PAS modulated sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; PAS YP_389542.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cbt:CLH_1870 transporter, major facilitator family YP_389543.1 TIGRFAM: Glycyl radical enzyme-activating; KEGG: pth:PTH_2421 pyruvate-formate lyase-activating enzyme; PFAM: Radical SAM; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_389544.1 PFAM: Pyruvate formate-lyase, PFL; Formate C-acetyltransferase glycine radical; KEGG: cno:NT01CX_1220 pyruvate formate-lyase YP_389547.1 KEGG: dvm:DvMF_1310 FolC bifunctional protein; TIGRFAM: Folylpolyglutamate synthetase YP_389548.1 PFAM: Pyridoxal phosphate-dependent transferase; TIGRFAM: L-seryl-tRNA selenium transferase; HAMAP: L-seryl-tRNA(Sec) selenium transferase; KEGG: dvm:DvMF_1311 selenocysteine synthase YP_389549.1 KEGG: dvm:DvMF_1312 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_389550.1 KEGG: dvl:Dvul_0481 aminopeptidase 1; PFAM: Peptidase M18, aminopeptidase I YP_389551.1 KEGG: dvm:DvMF_1315 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_389552.1 KEGG: dvl:Dvul_0123 hypothetical protein YP_389553.2 KEGG: dvm:DvMF_2681 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related YP_389554.1 KEGG: dvm:DvMF_2682 membrane-bound lytic murein transglycosylase B-like protein YP_389557.1 KEGG: dsa:Desal_1163 response regulator receiver modulated CheW protein; PFAM: Signal transduction response regulator, receiver region; CheW-like protein; SMART: Signal transduction response regulator, receiver region; CheW-like protein YP_389558.2 KEGG: dvl:Dvul_2286 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_389559.1 KEGG: dvm:DvMF_2685 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_389560.1 KEGG: dvm:DvMF_2686 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_389561.1 KEGG: dma:DMR_26240 hypothetical protein; TIGRFAM: Uncharacterized protein family UPF0047; PFAM: Uncharacterized protein family UPF0047 YP_389563.1 TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-4; HAMP linker domain; KEGG: dvm:DvMF_2663 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling; PAC motif; HAMP linker domain YP_389565.1 KEGG: dvl:Dvul_2294 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_389566.1 KEGG: dvm:DvMF_2661 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_389567.1 KEGG: dvl:Dvul_2295 Fe-S cluster assembly protein NifU; TIGRFAM: NIF system FeS cluster assembly, NifU; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; NIF system FeS cluster assembly, NifU, C-terminal; BFD-like [2Fe-2S]-binding region YP_389568.1 TIGRFAM: Cysteine desulfurase, NifS, bacterial/archaeal; KEGG: dvm:DvMF_2659 cysteine desulfurase NifS; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_389569.1 TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; KEGG: dvm:DvMF_2658 cysteine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_389570.1 KEGG: dvm:DvMF_2657 serine O-acetyltransferase YP_389572.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dvm:DvMF_2656 glyoxalase/bleomycin resistance protein/dioxygenase YP_389573.1 PFAM: Metal-dependent hydrolase HDOD; Diguanylate phosphodiesterase, predicted; KEGG: dma:DMR_45880 hypothetical protein YP_389574.1 KEGG: din:Selin_1790 hypothetical protein YP_389575.2 PFAM: Cobalamin (vitamin B12)-binding; KEGG: drt:Dret_0673 cobalamin B12-binding domain-containing protein YP_389576.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: drt:Dret_0674 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_389577.1 KEGG: dma:DMR_00430 glycogen phosphorylase; TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35 YP_389578.1 PFAM: tRNA-dihydrouridine synthase; KEGG: dvm:DvMF_2651 dihydrouridine synthase DuS YP_389579.1 KEGG: shi:Shel_06370 phosphoesterase, MJ0936 family; TIGRFAM: Uncharacterized protein family UPF0025; PFAM: Metallophosphoesterase YP_389580.1 PFAM: Heat shock protein Hsp20; KEGG: dvl:Dvul_2302 heat shock protein HSP20 YP_389581.1 PFAM: Heat shock protein Hsp20; KEGG: dvm:DvMF_2648 heat shock protein HSP20 YP_389582.1 PFAM: Protein of unknown function DUF343; KEGG: dvm:DvMF_2647 protein of unknown function DUF343 YP_389583.1 KEGG: dvl:Dvul_2305 phosphotransferase domain-containing protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal YP_389584.1 PFAM: Peptidase U32; KEGG: dvm:DvMF_2645 peptidase U32 YP_389585.1 TIGRFAM: PAS; PFAM: Signal transduction response regulator, receiver region; PAS fold; KEGG: sfu:Sfum_2379 multi-sensor hybrid histidine kinase; SMART: Signal transduction response regulator, receiver region; PAS YP_389586.1 KEGG: dvu:DVU0653 sigma-54 dependent transcriptional regulator/response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: ATPase, AAA+ type, core; Signal transduction response regulator, receiver region YP_389588.2 KEGG: dba:Dbac_1194 methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_389589.1 KEGG: dvl:Dvul_2308 CheW protein; PFAM: CheW-like protein; Signal transduction response regulator, receiver region; SMART: CheW-like protein; Signal transduction response regulator, receiver region YP_389590.1 PFAM: PAS fold; KEGG: ppd:Ppro_1622 PAS/PAC sensor protein YP_389591.2 PFAM: Nucleoside recognition; KEGG: dvu:DVU0651 hypothetical protein YP_389592.2 KEGG: dsa:Desal_2307 sirohydrochlorin cobaltochelatase; PFAM: Anaerobic cobalt chelatase YP_389593.1 PFAM: Bacterial transport system permease; KEGG: dsa:Desal_2306 ABC transporter permease YP_389594.1 PFAM: ABC transporter-like; KEGG: dvu:DVU0648 iron compound ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_389595.1 PFAM: Periplasmic binding protein; KEGG: dvm:DvMF_1499 periplasmic binding protein YP_389596.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase, core; KEGG: dvl:Dvul_2314 precorrin-2 C20-methyltransferase; PFAM: Tetrapyrrole methylase YP_389597.1 KEGG: acd:AOLE_16005 hypothetical protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_389598.1 KEGG: sfr:Sfri_2324 hypothetical protein; TIGRFAM: Protein of unknown function DUF124; PFAM: Protein of unknown function DUF124 YP_389600.1 KEGG: dsa:Desal_2312 serine dehydratase alpha chain; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain YP_389601.1 KEGG: dsa:Desal_0351 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_389602.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-4; PAS fold-3; KEGG: dvl:Dvul_2248 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_389603.1 KEGG: dsa:Desal_1454 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Signal transduction response regulator, receiver region; SMART: Metal-dependent phosphohydrolase, HD region; Signal transduction response regulator, receiver region YP_389604.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: mca:MCA0351 carboxymuconolactone decarboxylase domain-containing protein YP_389605.1 HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: dsa:Desal_3184 molybdenum cofactor synthesis domain protein YP_389606.1 KEGG: dvl:Dvul_2321 hypothetical protein YP_389607.1 KEGG: dvm:DvMF_2635 hypothetical protein YP_389608.1 PFAM: Thiamine biosynthesis Thi4 protein; FAD dependent oxidoreductase; KEGG: dvm:DvMF_2634 FAD dependent oxidoreductase YP_389610.1 KEGG: bsu:BSU37960 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_389611.1 PFAM: Glycosyl transferase, family 39; KEGG: dvm:DvMF_2632 dolichyl-phosphate-mannose-protein mannosyltransferase YP_389612.1 KEGG: dvm:DvMF_2631 hypothetical protein YP_389613.1 TIGRFAM: Penicillin-binding protein 1A; KEGG: dvm:DvMF_2630 penicillin-binding protein, 1A family; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_389614.1 TIGRFAM: Conserved hypothetical protein CHP02231; KEGG: dvm:DvMF_2628 hypothetical protein YP_389615.1 KEGG: cpo:COPRO5265_1098 NADH-dependent butanol dehydrogenase A (bdh i); PFAM: Alcohol dehydrogenase, iron-type YP_389616.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dvm:DvMF_2627 transcriptional regulator, TetR family YP_389617.1 TIGRFAM: Butyrate kinase; KEGG: dvl:Dvul_2330 butyrate kinase; PFAM: Acetate/butyrate kinase YP_389618.1 KEGG: dvm:DvMF_2625 phosphate butyryltransferase; PFAM: Phosphate acetyl/butaryl transferase YP_389619.1 KEGG: dvm:DvMF_2624 acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT YP_389622.1 KEGG: ica:Intca_0161 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_389623.1 TIGRFAM: S-adenosyl-L-homocysteine hydrolase; KEGG: dvm:DvMF_2580 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding YP_389624.2 KEGG: dvm:DvMF_2579 transcriptional regulator, ArsR family; PFAM: Methyltransferase type 11; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_389625.2 PFAM: Protein of unknown function DUF721; KEGG: dvl:Dvul_2350 hypothetical protein YP_389626.1 KEGG: dsa:Desal_3558 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator, N-terminal; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_389627.1 KEGG: dsa:Desal_3560 membrane protein YP_389628.1 KEGG: ddc:Dd586_2070 cupin 2 conserved barrel domain-containing protein YP_389629.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: dsa:Desal_3563 carboxymuconolactone decarboxylase YP_389630.1 PFAM: NADPH-dependent FMN reductase; KEGG: mac:MA0418 iron-sulfur flavoprotein YP_389631.2 KEGG: dsa:Desal_3565 hypothetical protein YP_389637.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: asa:ASA_4264 hypothetical protein YP_389638.1 PFAM: Flagellar assembly factor FliW; KEGG: dvm:DvMF_2527 flagellar assembly protein FliW YP_389639.1 KEGG: dvm:DvMF_2526 carbon storage regulator, CsrA; TIGRFAM: Carbon storage regulator; PFAM: Carbon storage regulator YP_389640.1 KEGG: dvm:DvMF_2525 flagellar hook-associated protein 3; TIGRFAM: Flagellar hook-associated protein 3; PFAM: Flagellin, N-terminal YP_389641.1 KEGG: dvm:DvMF_2524 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_389642.1 PFAM: FlgN; KEGG: dvm:DvMF_2523 FlgN family protein YP_389643.1 PFAM: Peptidase M23; Flagellar protein FlgJ, N-terminal; KEGG: dma:DMR_31520 peptidase M23B family protein YP_389644.1 PFAM: Flagellar P-ring protein; KEGG: dvm:DvMF_2521 flagellar basal body P-ring protein YP_389645.1 PFAM: Flagellar L-ring protein; KEGG: dvl:Dvul_2426 flagellar basal body L-ring protein YP_389646.2 KEGG: dvm:DvMF_2519 flagella basal body P-ring formation protein FlgA; TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain YP_389647.1 KEGG: dvl:Dvul_2428 flagellar basal body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_389648.1 KEGG: dvl:Dvul_2429 hypothetical protein; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal YP_389649.2 KEGG: dvl:Dvul_2430 hypothetical protein; HAMAP: Uncharacterized protein family UPF0090, bacteria; PFAM: Uncharacterized protein family UPF0090 YP_389650.1 KEGG: dvm:DvMF_2515 transcription elongation factor NusA; TIGRFAM: Transcription termination factor NusA; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA binding domain YP_004849564.1 PFAM: Protein of unknown function DUF448; KEGG: dvm:DvMF_2514 hypothetical protein YP_389651.1 KEGG: dvu:DVU0508 translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation initiation factor IF-2, N-terminal YP_389652.1 PFAM: Protein of unknown function DUF503; KEGG: dvm:DvMF_2512 protein of unknown function DUF503 YP_389653.1 PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; KEGG: dvu:DVU0506 DHH family protein YP_389654.1 KEGG: dvm:DvMF_2510 tRNA pseudouridine synthase B; TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; PFAM: Pseudouridine synthase II, TruB, N-terminal YP_389655.1 KEGG: dsa:Desal_0997 ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15 YP_389656.1 TIGRFAM: Polyribonucleotide nucleotidyltransferase; KEGG: dvm:DvMF_2508 polynucleotide phosphorylase/polyadenylase; PFAM: Exoribonuclease, phosphorolytic domain 1; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type YP_389659.2 KEGG: vha:VIBHAR_04839 ribosome-associated GTPase; HAMAP: ribosome biogenesis GTPase RsgA; PFAM: GTPase EngC YP_389660.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_2795 acetyltransferase YP_389662.1 TIGRFAM: Translation elongation factor, selenocysteine-specific; Small GTP-binding protein; KEGG: dvm:DvMF_2506 selenocysteine-specific translation elongation factor; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor SelB, winged helix, type 3; Translation elongation factor SelB, winged helix, type 2; Translation elongation factor EFTu/EF1A, domain 2 YP_389663.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: chy:CHY_1128 oligopeptide/dipeptide ABC transporter peptide-binding protein YP_389664.1 KEGG: das:Daes_3009 hypothetical protein; TIGRFAM: Uncharacterized protein family UPF0047; PFAM: Uncharacterized protein family UPF0047 YP_389665.2 PFAM: AzlC-like; KEGG: geb:GM18_0371 AzlC family protein YP_389666.1 PFAM: Branched-chain amino acid transport; KEGG: geb:GM18_0372 branched-chain amino acid transport YP_389667.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; KEGG: dvl:Dvul_0226 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_389668.1 SMART: Transcription regulator, AsnC-type; KEGG: dvm:DvMF_2503 transcriptional regulator, AsnC family YP_389669.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; KEGG: dvl:Dvul_0218 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III YP_389670.1 TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; KEGG: cag:Cagg_1264 precorrin-3B C17-methyltransferase; PFAM: Cobalamin (vitamin B12) biosynthesis CbiG, core; Tetrapyrrole methylase YP_389671.1 PFAM: Cytochrome c, class III; KEGG: dvl:Dvul_0215 cytochrome c class III YP_389672.1 KEGG: dvu:DVU3172 hypothetical protein YP_389673.1 KEGG: dvl:Dvul_0213 hypothetical protein YP_389674.1 KEGG: dvm:DvMF_2496 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: UbiE/COQ5 methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_389675.1 PFAM: Protein of unknown function DUF2065 YP_389676.1 TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: dvl:Dvul_0210 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation YP_389677.1 KEGG: dvm:DvMF_2491 purine or other phosphorylase 1; TIGRFAM: Futalosine nucleosidase; PFAM: Nucleoside phosphorylase YP_389678.1 KEGG: dvu:DVU3179 octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase YP_389679.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Metal-dependent hydrolase HDOD; Diguanylate cyclase, predicted; PAS fold-4; PAS fold; KEGG: dvm:DvMF_2489 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; PAS; PAC motif YP_389680.1 KEGG: dvl:Dvul_0206 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein YP_389682.1 KEGG: dvl:Dvul_0204 desulfoferrodoxin; TIGRFAM: Desulfoferrodoxin; Desulfoferrodoxin, ferrous iron-binding region; Desulfoferrodoxin Dfx; PFAM: Desulfoferrodoxin, ferrous iron-binding region; Desulfoferrodoxin Dfx YP_389683.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dvm:DvMF_2480 rubredoxin-type Fe(Cys)4 protein YP_389684.2 PFAM: Flavodoxin/nitric oxide synthase; KEGG: dvm:DvMF_2479 beta-lactamase domain protein YP_389685.1 TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; Helix-turn-helix, Fis-type; KEGG: drt:Dret_0447 sigma54 specific transcriptional regulator; SMART: ATPase, AAA+ type, core; PAS YP_389686.2 KEGG: dsa:Desal_0622 hypothetical protein YP_389687.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: drt:Dret_0445 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_389689.1 PFAM: Cobyrinic acid a,c-diamide synthase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: drt:Dret_0442 cobyrinic acid ac-diamide synthase YP_389690.1 PFAM: Cobyrinic acid a,c-diamide synthase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: drt:Dret_0441 cobyrinic acid ac-diamide synthase YP_389691.1 PFAM: ATPase-like, ParA/MinD; Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: drt:Dret_0440 ATPase-like, ParA/MinD YP_389693.1 PFAM: Cytochrome bd ubiquinol oxidase, subunit I; KEGG: dvu:DVU3271 cytochrome d ubiquinol oxidase subunit I YP_389694.1 KEGG: dvm:DvMF_2472 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome bd ubiquinol oxidase, subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II YP_389695.2 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; KEGG: das:Daes_2438 PAS sensor protein; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_389696.1 TIGRFAM: Acetate--CoA ligase; KEGG: dvl:Dvul_0401 acetate--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_389697.2 PFAM: GCN5-related N-acetyltransferase; CoA-binding; KEGG: dvm:DvMF_1776 GCN5-related N-acetyltransferase YP_389698.1 KEGG: dbr:Deba_1105 hypothetical protein YP_389700.1 KEGG: dvm:DvMF_0305 split soret cytochrome c precursor YP_389701.1 KEGG: dvm:DvMF_1782 CheD; PFAM: Chemoreceptor glutamine deamidase cheD YP_389702.1 KEGG: dvl:Dvul_0397 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_389703.1 PFAM: Protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: dvl:Dvul_0395 hypothetical protein YP_389704.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: dvm:DvMF_1787 haloacid dehalogenase domain protein hydrolase YP_389705.1 TIGRFAM: Phosphatidylserine decarboxylase-related protein; KEGG: dvl:Dvul_0393 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related YP_389706.1 KEGG: dvm:DvMF_1790 CDP-diacylglycerol/serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_389707.1 TIGRFAM: Bacterial 2-isopropylmalate synthase; KEGG: dvl:Dvul_0391 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_389708.1 KEGG: dvm:DvMF_1792 3-isopropylmalate dehydratase large subunit; TIGRFAM: Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; 3-isopropylmalate dehydratase, large subunit, prokaryotic; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_389709.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit, subgroup; KEGG: dma:DMR_16000 3-isopropylmalate dehydratase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_389710.1 PFAM: Domain of unknown function DUF89; KEGG: dvl:Dvul_0388 hypothetical protein YP_389711.1 TIGRFAM: Isopropylmalate dehydrogenase; KEGG: dvm:DvMF_1794 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_389712.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: asa:ASA_2076 ABC-type amino acid transporter, periplasmic binding protein YP_389713.1 KEGG: dvm:DvMF_1801 phage shock protein C, PspC; TIGRFAM: Phage shock protein C; PFAM: PspC YP_389714.1 TIGRFAM: Phage shock B; KEGG: dvm:DvMF_1800 phage shock protein B YP_389715.1 KEGG: dvm:DvMF_1799 phage shock protein A, PspA; TIGRFAM: Phage shock protein A; PFAM: PspA/IM30 YP_389716.1 TIGRFAM: Transcription activator PspF; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; KEGG: dbr:Deba_2764 Fis family transcriptional regulator; SMART: ATPase, AAA+ type, core YP_389717.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; MoeA, N-terminal region, domain I/II; MoeA, C-terminal, domain IV; KEGG: dvl:Dvul_0382 molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; SMART: Molybdopterin binding YP_389718.1 KEGG: rci:RCIX127 hypothetical protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP YP_389719.1 KEGG: dvm:DvMF_1856 hypothetical protein YP_389720.1 KEGG: dsa:Desal_0673 metal dependent phosphohydrolase; TIGRFAM: HDIG; PFAM: Metal-dependent hydrolase HDOD YP_389721.1 KEGG: dvm:DvMF_1857 hypothetical protein YP_389722.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; PAS fold-4; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_1858 multi-sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_389723.1 KEGG: dvm:DvMF_1859 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_389726.1 SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain; TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Pyruvate/ketoisovalerate oxidoreductase YP_389727.1 KEGG: dvl:Dvul_0347 L-lactate transport; TIGRFAM: L-lactate permease; PFAM: L-lactate permease YP_389728.1 KEGG: dvm:DvMF_1862 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_389729.1 PFAM: Cysteine-rich region, CCG; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_0345 hypothetical protein YP_389730.2 TIGRFAM: Phosphate acetyltransferase; KEGG: dvl:Dvul_0344 phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; DRTGG YP_389731.1 TIGRFAM: Acetate kinase; KEGG: dvl:Dvul_0343 acetate kinase; PFAM: Acetate/butyrate kinase YP_389732.1 PFAM: DRTGG; KEGG: dvm:DvMF_1866 DRTGG domain protein YP_389733.1 PFAM: Protein of unknown function DUF162; KEGG: dvl:Dvul_0341 hypothetical protein YP_389734.1 PFAM: Protein of unknown function DUF162; Cysteine-rich region, CCG; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_0340 hypothetical protein YP_389735.1 KEGG: dvl:Dvul_0339 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache, type 2; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_389736.1 PFAM: Protein of unknown function DUF362; KEGG: dvm:DvMF_1870 protein of unknown function DUF362 YP_389737.1 KEGG: dvl:Dvul_0337 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_389738.1 KEGG: dvm:DvMF_1843 acetyltransferase YP_389739.1 PFAM: Polysaccharide deacetylase; KEGG: dvm:DvMF_1847 polysaccharide deacetylase YP_389740.1 KEGG: dvm:DvMF_1848 hypothetical protein YP_389741.1 KEGG: dvm:DvMF_1849 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_389742.2 KEGG: dvm:DvMF_1850 capsule polysaccharide biosynthesis protein YP_389743.1 PFAM: Methyltransferase type 11; KEGG: dvm:DvMF_1851 methyltransferase type 11 YP_389744.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing; KEGG: dvm:DvMF_1846 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_389745.1 PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain; KEGG: dvm:DvMF_1845 N-acylneuraminate-9-phosphate synthase; SMART: SAF domain YP_389746.1 KEGG: dvm:DvMF_1844 acylneuraminate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase YP_389750.2 KEGG: dvm:DvMF_1869 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; Cache, type 2; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_389752.1 PFAM: Ethanolamine/propanediol utilisation protein, EutP/PduV , C-terminal; MIRO-like; KEGG: dsa:Desal_0484 ethanolamine utilization protein, EutP YP_389753.1 KEGG: dsa:Desal_0483 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria YP_389754.1 KEGG: dsa:Desal_0482 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria YP_389755.1 PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; KEGG: dsa:Desal_0481 respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_389756.1 KEGG: dsa:Desal_0480 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_389759.1 KEGG: cts:Ctha_1877 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria YP_389760.1 KEGG: dps:DP1826 hypothetical protein YP_389761.1 PFAM: Microcompartment protein, bacteria; KEGG: dsa:Desal_0477 microcompartments protein YP_389762.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dsa:Desal_0476 ethanolamine utilization protein EutN/carboxysome structural protein CcmL YP_389763.1 KEGG: dsa:Desal_0475 hypothetical protein YP_389764.1 TIGRFAM: Ethanolamine utilisation EutJ; KEGG: dsa:Desal_0474 ethanolamine utilization protein EutJ YP_389765.1 PFAM: Propanediol utilisation protein; KEGG: dsa:Desal_0473 propanediol utilization protein YP_389767.1 KEGG: dsa:Desal_0472 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria YP_389768.1 KEGG: dsa:Desal_0471 acetaldehyde dehydrogenase (acetylating); TIGRFAM: Acetaldehyde dehydrogenase, acetylating YP_389769.1 KEGG: dsa:Desal_0470 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria YP_389770.2 TIGRFAM: Glycyl radical enzyme-activating; KEGG: dsa:Desal_0469 glycyl-radical enzyme activating protein family; PFAM: Radical SAM; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_389771.1 KEGG: dsa:Desal_0468 formate C-acetyltransferase; PFAM: Pyruvate formate-lyase, PFL; Formate C-acetyltransferase glycine radical YP_389772.2 KEGG: dsa:Desal_0467 acetaldehyde dehydrogenase-like protein YP_389773.1 KEGG: dsa:Desal_0466 microcompartments protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria YP_389777.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dsa:Desal_0465 hypothetical protein YP_389778.1 KEGG: dsa:Desal_0464 hypothetical protein YP_389780.1 KEGG: dsa:Desal_0463 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_389782.1 KEGG: dsa:Desal_2758 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_389784.1 KEGG: dsa:Desal_2758 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_389786.1 KEGG: ppd:Ppro_3001 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like YP_389787.1 PFAM: Tryptophan/tyrosine permease; KEGG: dsa:Desal_1639 aromatic amino acid permease YP_389790.1 PFAM: Methyltransferase type 12 YP_389792.2 PFAM: Protein of unknown function DUF81; KEGG: aeh:Mlg_0416 hypothetical protein YP_389794.1 KEGG: drt:Dret_1055 choline/carnitine/betaine transporter; TIGRFAM: BCCT transporter; PFAM: BCCT transporter YP_389795.1 PFAM: ABC-type glycine betaine transport system, substrate-binding region; KEGG: drt:Dret_1056 substrate-binding region of ABC-type glycine betaine transport system YP_389796.1 KEGG: nde:NIDE1115 hypothetical protein YP_389797.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: das:Daes_0609 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_389798.1 KEGG: dvl:Dvul_2010 ABC transporter substrate-binding protein YP_389800.1 KEGG: vex:VEA_000537 autoinducer 2-binding periplasmic protein LuxP precursor YP_389802.1 KEGG: ipa:Isop_1170 hypothetical protein YP_389803.1 KEGG: son:SO_A0180 hypothetical protein YP_389804.2 KEGG: das:Daes_1981 hypothetical protein YP_389805.1 PFAM: Glycosyl transferase, group 1; KEGG: mgm:Mmc1_0391 glycosyl transferase, group 1 YP_389806.1 KEGG: eba:ebA4265 amidotransferase, asparagine synthase (glutamine-hydrolyzing); TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_389807.1 PFAM: Methyltransferase type 11; KEGG: azl:AZL_f01090 methyltransferase YP_389808.2 KEGG: sat:SYN_00361 hypothetical protein YP_389809.1 PFAM: Glycosyl transferase, family 2; KEGG: atm:ANT_27690 glycosyltransferase YP_389810.1 KEGG: dvu:DVU0088 sodium/panthothenate symporter; TIGRFAM: Sodium/pantothenate symporter; Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_389811.1 PFAM: Protein of unknown function DUF997; KEGG: dsa:Desal_2644 hypothetical protein YP_389813.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, phosphonate import, PhnC; KEGG: das:Daes_1170 phosphonate ABC transporter ATPase subunit; PFAM: ABC transporter-like YP_389814.1 TIGRFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein; Phosphonate-binding periplasmic protein; KEGG: das:Daes_1171 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_389815.1 KEGG: das:Daes_1172 phosphonate ABC transporter inner membrane subunit; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component YP_389816.1 TIGRFAM: Phosphonate C-P lyase system, transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: dba:Dbac_0812 phophonate C-P lyase system transcriptional regulator PhnF, GntR family; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_389817.1 KEGG: das:Daes_1163 phosphonate C-P lyase system protein PhnG; TIGRFAM: Phosphonate metabolism PhnG; PFAM: Phosphonate metabolism PhnG YP_389818.1 KEGG: das:Daes_1164 phosphonate C-P lyase system protein PhnH; TIGRFAM: Bacterial phosphonate metabolism; PFAM: Bacterial phosphonate metabolism YP_389819.1 PFAM: Phosphonate metabolism; KEGG: dba:Dbac_0815 phosphonate metabolism YP_389820.1 PFAM: Phosphonate metabolism PhnJ; KEGG: rpx:Rpdx1_0744 phosphonate metabolism PhnJ YP_389821.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphonate C-P lyase system, PhnK; KEGG: atu:Atu0177 phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_389822.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphonate C-P lyase system, PhnL; KEGG: das:Daes_1168 phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter-like YP_389823.1 KEGG: das:Daes_1169 phosphonate metabolism protein PhnM; TIGRFAM: Phosphonate metabolism PhnM; PFAM: Amidohydrolase 1 YP_389824.1 KEGG: rce:RC1_0524 hypothetical protein; TIGRFAM: Protein of unknown function DUF1045; PFAM: Protein of unknown function DUF1045 YP_389825.1 KEGG: maq:Maqu_4044 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; TIGRFAM: Phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: Guanylate kinase/L-type calcium channel region YP_389826.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dvl:Dvul_2946 rubrerythrin YP_389828.2 PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: dba:Dbac_0450 glutathione-dependent formaldehyde-activating GFA YP_389831.2 PFAM: Integrase, catalytic core; Transposase IS3/IS911; KEGG: dap:Dacet_2568 transposase IS3/IS911 family protein YP_389834.2 KEGG: dvm:DvMF_0710 phage repressor; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_389836.1 KEGG: dvu:DVU1143 hypothetical protein YP_389837.1 KEGG: dvm:DvMF_0712 hypothetical protein YP_389839.1 PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: dma:DMR_14490 hypothetical protein YP_389840.1 KEGG: dma:DMR_14500 hypothetical protein YP_389841.1 KEGG: dma:DMR_14510 hypothetical protein YP_389843.1 KEGG: dvu:DVU1136 host-nuclease inhibitor protein Gam YP_389844.1 KEGG: dvu:DVU1754 hypothetical protein YP_389845.1 KEGG: das:Daes_1066 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_389846.2 KEGG: dvm:DvMF_1270 hypothetical protein YP_389847.1 PFAM: Protein of unknown function DUF1018; KEGG: dbr:Deba_1602 hypothetical protein YP_389848.1 KEGG: dbr:Deba_1601 hypothetical protein YP_389849.1 KEGG: dvu:DVU1130 DNA-binding protein YP_389850.1 PFAM: Integrase, catalytic core; KEGG: das:Daes_2540 integrase catalytic subunit YP_389851.1 PFAM: Transposase IS3/IS911; KEGG: das:Daes_2541 transposase IS3/IS911 family protein YP_389853.2 PFAM: Integrase, catalytic core; Transposase IS3/IS911; KEGG: oan:Oant_2735 transposase IS3/IS911 family protein YP_389856.1 PFAM: Peptidase M15A, C-terminal; KEGG: bvi:Bcep1808_3253 peptidase M15A YP_389859.1 KEGG: dbr:Deba_1593 hypothetical protein YP_389860.1 KEGG: dbr:Deba_1594 hypothetical protein YP_389861.1 KEGG: dvm:DvMF_1282 portal protein YP_389862.1 PFAM: Protein of unknown function DUF935; KEGG: dbr:Deba_1596 hypothetical protein YP_389863.1 KEGG: dbr:Deba_1597 phage head morphogenesis protein, SPP1 gp7 family; TIGRFAM: Phage head morphogenesis protein, SPP1 gp7; PFAM: Phage head morphogenesis protein, SPP1 gp7 YP_389864.1 KEGG: dvm:DvMF_1286 hypothetical protein YP_389865.1 KEGG: dbr:Deba_1590 hypothetical protein YP_389866.1 KEGG: dbr:Deba_1589 hypothetical protein YP_389867.1 PFAM: Protein of unknown function DUF1320; KEGG: dvm:DvMF_1289 protein of unknown function DUF1320 YP_389868.1 TIGRFAM: Phage virion morphogenesis ( tail completion) protein; KEGG: dvu:DVU1114 virion morphogenesis protein YP_389869.1 KEGG: dvm:DvMF_1291 hypothetical protein YP_389871.1 KEGG: gem:GM21_3662 hypothetical protein YP_389872.1 KEGG: gem:GM21_3661 hypothetical protein YP_389875.1 KEGG: aco:Amico_1111 phage tail tape measure protein, TP901 family; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region YP_389876.1 KEGG: dvu:DVU1106 hypothetical protein YP_389877.1 KEGG: dvu:DVU1105 hypothetical protein YP_389878.1 KEGG: dvu:DVU1104 baseplate assembly protein YP_389879.2 KEGG: dvu:DVU1103 baseplate assembly protein YP_389880.1 PFAM: Baseplate assembly protein J-like, predicted; KEGG: dvm:DvMF_1303 baseplate assembly protein YP_389881.1 KEGG: dvm:DvMF_1304 hypothetical protein YP_389882.1 KEGG: dvm:DvMF_1305 tail fiber protein YP_389883.1 KEGG: tcx:Tcr_0692 hypothetical protein YP_389885.2 KEGG: dal:Dalk_3540 hypothetical protein YP_389886.1 KEGG: azl:AZL_a06020 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal YP_389887.2 PFAM: Integrase, catalytic core, phage; KEGG: dma:DMR_34440 site-specific recombinase YP_389890.2 KEGG: dba:Dbac_1518 hypothetical protein YP_389892.1 KEGG: sfu:Sfum_2425 hypothetical protein YP_389893.1 KEGG: elm:ELI_1642 hypothetical protein YP_389894.1 KEGG: gme:Gmet_3281 transposase/IS protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_389895.1 PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix region; KEGG: gme:Gmet_3282 integrase catalytic subunit YP_004849566.1 PFAM: Protein of unknown function DUF2188; KEGG: dly:Dehly_1615 hypothetical protein YP_004849568.1 TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: rpf:Rpic12D_0630 excisionase DNA binding domain-containing protein YP_389900.1 PFAM: Heat shock protein Hsp20; KEGG: rpf:Rpic12D_0629 heat shock protein HSP20 YP_389901.1 KEGG: mfa:Mfla_1170 ATPase AAA-2; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core YP_389902.1 KEGG: rpf:Rpic12D_0625 phospholipase D/transphosphatidylase YP_389903.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: maq:Maqu_3391 ATP-dependent metalloprotease FtsH; PFAM: ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; Peptidase M41 YP_389904.1 TIGRFAM: Thioredoxin; KEGG: mfa:Mfla_1161 thioredoxin; PFAM: Thioredoxin domain YP_389905.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; PAS fold-3; KEGG: bmu:Bmul_2305 PAS/PAC sensor(S)-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif YP_389906.1 KEGG: rpf:Rpic12D_0616 hypothetical protein YP_389907.1 PFAM: Peptidase M48, Ste24p; KEGG: bmj:BMULJ_00933 heat shock protein YP_389908.1 KEGG: bmj:BMULJ_00932 trypsin-like serine protease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF YP_389909.1 PFAM: Glycoside hydrolase, family 24; KEGG: bmj:BMULJ_00931 lysozyme YP_389912.1 TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; DNA/RNA helicase, C-terminal; KEGG: dbr:Deba_2537 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal YP_389913.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: dbr:Deba_2538 restriction modification system DNA specificity domain protein YP_389914.1 PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: tme:Tmel_1088 transcriptional regulator YP_389915.1 KEGG: dbr:Deba_2540 site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase, adenine-specific YP_389916.1 KEGG: sun:SUN_1095 hypothetical protein YP_389917.1 TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; KEGG: dbr:Deba_2542 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific YP_389918.2 KEGG: sat:SYN_01828 cytoplasmic protein; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory YP_389919.1 PFAM: ERF; KEGG: dvu:DVU2032 ERF family protein YP_389920.1 KEGG: dvu:DVU2033 hypothetical protein YP_389921.1 KEGG: dvl:Dvul_2608 ATPase; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core YP_389922.1 KEGG: dvl:Dvul_2612 hypothetical protein YP_389923.1 SMART: von Willebrand factor, type A; KEGG: dvl:Dvul_2614 von Willebrand factor type A YP_389927.1 KEGG: dvl:Dvul_2576 hypothetical protein YP_389929.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: dhd:Dhaf_0086 filamentation induced by cAMP protein Fic YP_389932.2 KEGG: sfu:Sfum_2425 hypothetical protein YP_389935.1 PFAM: Mechanosensitive ion channel MscS; KEGG: dsa:Desal_2909 MscS mechanosensitive ion channel YP_389937.1 KEGG: dvm:DvMF_1712 hypothetical protein YP_389938.2 TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; KEGG: dvm:DvMF_1713 DNA polymerase I; SMART: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2 YP_389939.1 KEGG: dvl:Dvul_2446 hypothetical protein YP_389940.1 KEGG: dvl:Dvul_2447 serine--glyoxylate transaminase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_389941.1 PFAM: Protein of unknown function DUF1844; KEGG: dvm:DvMF_1716 hypothetical protein YP_389943.1 SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: dvm:DvMF_1717 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region YP_389944.1 KEGG: dvm:DvMF_1719 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_389945.1 KEGG: dvu:DVU0489 phenylacetate-coenzyme A ligase; PFAM: AMP-dependent synthetase/ligase YP_389946.1 PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: dvl:Dvul_2453 phosphoribosylamine--glycine ligase YP_389947.1 TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: dvm:DvMF_1723 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_389948.1 KEGG: dvm:DvMF_1726 hypothetical protein YP_389949.1 KEGG: dvm:DvMF_1727 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00245; PFAM: Conserved hypothetical protein CHP00245 YP_389952.1 TIGRFAM: DNA mismatch repair protein, N-terminal; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like; KEGG: dvm:DvMF_1729 DNA mismatch repair protein MutL; SMART: MutL, C-terminal, dimerisation; ATP-binding region, ATPase-like YP_389953.1 TIGRFAM: PAS; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; KEGG: dvm:DvMF_1730 multi-sensor signal transduction histidine kinase; SMART: Signal transduction response regulator, receiver region; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like YP_389954.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; KEGG: dvl:Dvul_2460 ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_389955.1 KEGG: dvl:Dvul_2461 hypothetical protein YP_389956.1 PFAM: Serine/threonine-protein kinase-like domain; Protein of unknown function DUF1566; KEGG: dvl:Dvul_2462 protein kinase YP_389957.2 PFAM: Metallophosphoesterase; KEGG: dvm:DvMF_1737 metallophosphoesterase YP_389958.1 TIGRFAM: 6-phosphogluconate dehydrogenase related protein; KEGG: tro:trd_1142 6-phosphogluconate dehydrogenase-like protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal YP_389959.1 TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: tnp:Tnap_1615 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase YP_389960.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsa:Desal_2276 MarR family transcriptional regulator YP_389961.1 KEGG: axy:AXYL_06108 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730 YP_389962.1 KEGG: dvm:DvMF_2123 chromosome replication initiation inhibitor protein; TIGRFAM: Transcriptional regulator, ArgP; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding YP_389963.2 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: das:Daes_0054 lysine exporter protein LysE/YggA YP_389964.1 KEGG: dvm:DvMF_1739 isocitrate/isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_389966.1 TIGRFAM: Tryptophan synthase, alpha chain; KEGG: dma:DMR_05250 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain YP_389967.1 TIGRFAM: Tryptophan synthase, beta chain; KEGG: dvm:DvMF_1741 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_389968.1 KEGG: dvm:DvMF_1742 phosphoribosylanthranilate isomerase; PFAM: N-5'phosphoribosylanthranilate isomerase (PRAI) YP_389969.1 KEGG: dma:DMR_05280 indole-3-glycerol phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_389970.1 TIGRFAM: Anthranilate phosphoribosyl transferase; KEGG: dvm:DvMF_1744 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal YP_389971.1 TIGRFAM: Glutamine amidotransferase of anthranilate synthase; KEGG: dvl:Dvul_2471 glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I, C-terminal YP_389972.1 KEGG: dvm:DvMF_1746 anthranilate synthase; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_389973.1 PFAM: Prephenate dehydrogenase; KEGG: dvm:DvMF_1747 prephenate dehydrogenase YP_389974.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; KEGG: dvu:DVU0463 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core YP_389975.1 KEGG: dvm:DvMF_1749 prephenate dehydratase; PFAM: Prephenate dehydratase; Amino acid-binding ACT; Chorismate mutase, type II; SMART: Chorismate mutase YP_389976.1 PFAM: 3-dehydroquinate synthase, prokaryotic-type; KEGG: dvl:Dvul_2476 3-dehydroquinate synthase YP_389977.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: dvl:Dvul_2477 fructose-bisphosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_389978.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: drt:Dret_0114 fructose-bisphosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_389980.1 KEGG: drt:Dret_0113 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_389981.1 PFAM: Nitrogen regulatory protein PII; KEGG: dsa:Desal_3067 nitrogen regulatory protein P-II YP_389982.1 PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; KEGG: dvl:Dvul_2480 phosphoesterase domain-containing protein YP_389983.1 PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase; KEGG: dsa:Desal_2963 cobalbumin biosynthesis protein YP_389984.1 KEGG: dvu:DVU0455 hypothetical protein YP_389987.1 PFAM: DNA helicase, UvrD/REP type; PHP, C-terminal; KEGG: dvl:Dvul_2483 UvrD/REP helicase YP_389989.1 PFAM: Methyltransferase small; KEGG: dma:DMR_28910 hypothetical protein YP_389990.1 KEGG: dba:Dbac_3110 fructose-bisphosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_389992.1 KEGG: dvu:DVU0451 chloride channel family protein; PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core YP_389993.1 SMART: Riboflavin kinase; TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: dvm:DvMF_1762 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase YP_389994.1 KEGG: dvm:DvMF_2730 hypothetical protein YP_389996.1 KEGG: dma:DMR_01390 methyl-accepting chemotaxis protein; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling YP_389997.1 PFAM: Protein of unknown function DUF898, transmembrane bacterial; KEGG: gbe:GbCGDNIH1_1250 hypothetical protein YP_389998.1 PFAM: Peptidase M48, Ste24p; KEGG: rce:RC1_3147 peptidase M48 family YP_389999.1 PFAM: HTH transcriptional regulator, LysR; KEGG: dsa:Desal_2665 ModE family transcriptional regulator YP_390000.1 PFAM: Molybdopterin oxidoreductase Fe4S4 region; KEGG: dvl:Dvul_0501 formate dehydrogenase, subunit alpha YP_390001.1 TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; KEGG: dvl:Dvul_0501 formate dehydrogenase, subunit alpha; PFAM: Molydopterin dinucleotide-binding region; Molybdopterin oxidoreductase YP_390002.1 KEGG: dsa:Desal_2658 FdhB2 YP_390003.1 PFAM: Formate dehydrogenase accessory protein; KEGG: dvm:DvMF_0648 formate dehydrogenase accessory protein YP_390004.1 KEGG: sfu:Sfum_0034 formate dehydrogenase accessory protein FdhD; TIGRFAM: Formate dehydrogenase, subunit FdhD; PFAM: Formate dehydrogenase, subunit FdhD YP_390005.1 KEGG: dsa:Desal_0307 TOBE domain protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; Integrase, catalytic core, phage YP_390006.1 KEGG: dsa:Desal_0306 molybdenum ABC transporter periplasmic molybdate-binding protein; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_390007.1 KEGG: dsa:Desal_0305 molybdate ABC transporter inner membrane subunit; TIGRFAM: Molybdate ABC transporter, permease; PFAM: Binding-protein-dependent transport systems inner membrane component YP_390008.1 PFAM: ABC transporter-like; KEGG: dma:DMR_19520 molybdenum ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_390009.1 PFAM: HTH transcriptional regulator, LysR; KEGG: dvl:Dvul_1572 ModE family transcriptional regulator YP_390011.1 KEGG: drt:Dret_0199 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_390012.1 KEGG: dsa:Desal_0602 heterodisulfide reductase, C subunit YP_390013.1 KEGG: dsa:Desal_0601 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich region, CCG YP_390014.1 PFAM: FAD dependent oxidoreductase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_0828 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_390015.1 PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; KEGG: dma:DMR_01930 methyl-viologen-reducing hydrogenase delta subunit family protein YP_390016.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: drt:Dret_2313 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_390017.1 KEGG: drt:Dret_2312 iron-sulfur binding protein YP_390018.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding region; KEGG: dsa:Desal_0596 oxidoreductase FAD/NAD(P)-binding domain protein YP_390019.1 KEGG: dvm:DvMF_0329 hypothetical protein YP_390022.1 KEGG: dvl:Dvul_0834 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_390023.1 KEGG: dsa:Desal_0288 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_390024.1 KEGG: dsa:Desal_0287 fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_390026.1 KEGG: dvl:Dvul_1573 molybdopterin binding domain-containing protein; PFAM: Molybdopterin binding; SMART: Molybdopterin binding YP_390027.1 KEGG: dvl:Dvul_1574 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Ferredoxin; [2Fe-2S]-binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead YP_390028.1 PFAM: Amine oxidase; Cysteine-rich region, CCG; KEGG: dvu:DVU1558 hypothetical protein YP_390029.1 KEGG: dsa:Desal_0297 hypothetical protein YP_390030.1 PFAM: Methyltransferase type 11; KEGG: dvu:DVU1556 hypothetical protein YP_390031.1 PFAM: CGCAxxGCC motif; KEGG: dvl:Dvul_1578 hypothetical protein YP_390032.1 KEGG: dsa:Desal_0294 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_390033.1 PFAM: AMP-dependent synthetase/ligase; KEGG: dvu:DVU1553 AMP-binding protein YP_390034.1 PFAM: XdhC- CoxI; KEGG: dvl:Dvul_1581 hypothetical protein YP_390035.1 KEGG: dsa:Desal_0291 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_390036.1 KEGG: dma:DMR_p1_00100 transposase for insertion sequence element YP_390037.1 KEGG: dvu:DVU2006 hypothetical protein YP_390038.2 PFAM: Phosphoglycerate mutase; KEGG: dvl:Dvul_1583 phosphoglycerate mutase YP_390039.1 PFAM: Protein of unknown function DUF1045; KEGG: rru:Rru_A1036 hypothetical protein YP_390040.1 KEGG: das:Daes_0595 fumarate lyase; PFAM: Fumarate lyase YP_390041.1 KEGG: dvm:DvMF_2443 hypothetical protein YP_390042.1 KEGG: dvu:DVU4002 hypothetical protein YP_390043.1 PFAM: Zinc/iron permease; KEGG: dsa:Desal_2780 zinc transporter ZupT YP_390044.1 PFAM: Acyltransferase 3; KEGG: pap:PSPA7_5981 O-antigen acetylase YP_390049.1 KEGG: dvl:Dvul_2346 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_390050.1 PFAM: Protein of unknown function DUF302; KEGG: dvm:DvMF_0007 protein of unknown function DUF302 YP_390051.1 PFAM: Copper resistance lipoprotein NlpE; KEGG: axy:AXYL_04242 lipoprotein NlpE involved in copper resistance family protein YP_390052.1 KEGG: dvu:DVU0115 shikimate 5-dehydrogenase; TIGRFAM: Quinate/shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_390054.1 TIGRFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal; KEGG: dvu:DVU0114 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal YP_390055.1 KEGG: dvl:Dvul_2850 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase YP_390057.1 KEGG: dvl:Dvul_2810 class II aldolase/adducin family protein; TIGRFAM: Uncharacterized protein family UPF0066; PFAM: Class II aldolase/adducin, N-terminal; Uncharacterized protein family UPF0066 YP_390058.1 TIGRFAM: Thiamine-monophosphate kinase; KEGG: dvm:DvMF_1966 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal YP_390059.1 PFAM: DNA helicase, UvrD/REP type; KEGG: dvm:DvMF_1967 UvrD/REP helicase YP_390060.2 PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: dvl:Dvul_2813 type I phosphodiesterase/nucleotide pyrophosphatase YP_390061.1 KEGG: dvm:DvMF_1970 hypothetical protein YP_390068.1 KEGG: dvm:DvMF_2218 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_390069.1 KEGG: dvu:DVU0042 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding YP_390070.1 KEGG: dvl:Dvul_2918 flagellar biosynthetic protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3 YP_390071.2 KEGG: dvl:Dvul_2917 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein YP_390072.1 KEGG: dvm:DvMF_2214 flagellar biosynthesis protein FliO; TIGRFAM: Flagellar biosynthesis protein, FliO; PFAM: Flagellar biosynthesis protein, FliO YP_390073.1 KEGG: dvm:DvMF_2213 flagellar motor switch protein FliN; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA) YP_390074.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: dsa:Desal_3814 flagellar basal body-associated protein FliL YP_390075.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dsa:Desal_3813 OmpA/MotB domain protein YP_390076.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dvm:DvMF_2210 OmpA/MotB domain protein YP_390077.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dsa:Desal_3811 MotA/TolQ/ExbB proton channel YP_390078.2 KEGG: dvl:Dvul_2910 alanine racemase; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal YP_390079.1 KEGG: dvm:DvMF_2207 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2 YP_390080.1 PFAM: Integrase, catalytic core; KEGG: dau:Daud_0321 integrase catalytic subunit YP_390081.1 KEGG: dvm:DvMF_2206 hypothetical protein YP_390082.1 KEGG: dvm:DvMF_2205 sugar fermentation stimulation protein; TIGRFAM: Sugar fermentation stimulation protein; PFAM: Sugar fermentation stimulation protein YP_390084.1 KEGG: dvl:Dvul_0165 aminotransferase, class I and II; PFAM: Aminotransferase, class I/II YP_390085.1 PFAM: Phosphoglucose isomerase (PGI); KEGG: dvm:DvMF_2202 glucose-6-phosphate isomerase YP_390086.1 KEGG: dvm:DvMF_2201 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_390087.1 KEGG: dvu:DVU3220 sigma-54 dependent transcriptional regulator/response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_390088.1 PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052; KEGG: das:Daes_1179 hypothetical protein YP_390089.1 KEGG: dba:Dbac_2697 hypothetical protein YP_390090.1 KEGG: sse:Ssed_2385 hypothetical protein YP_390091.1 KEGG: dvu:DVU0256 DEAD-box ATP dependent DNA helicase; PFAM: Protein of unknown function DUF1998; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_390092.1 KEGG: dvm:DvMF_2196 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_390093.1 KEGG: dvu:DVU0144 cytidyltransferase-like protein; TIGRFAM: RfaE bifunctional protein, domain II; Cytidyltransferase-related; PFAM: Cytidylyltransferase YP_390094.1 PFAM: Uncharacterized protein family UPF0153; KEGG: dvl:Dvul_2824 hypothetical protein YP_390095.1 TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: dvl:Dvul_2825 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib YP_390096.1 PFAM: Peptidase M50; KEGG: dvl:Dvul_2826 peptidase M50 YP_390097.1 KEGG: dvm:DvMF_2332 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_390098.2 KEGG: dvu:DVU0136 hypothetical protein YP_390099.1 KEGG: dvm:DvMF_2330 PP-loop domain protein; TIGRFAM: Uncharacterized protein family UPF0021, C-terminal; PFAM: PP-loop YP_390100.1 PFAM: Glycosyl transferase, family 2; KEGG: dvm:DvMF_2329 glycosyl transferase 2 YP_390101.1 PFAM: Glycosyl transferase, group 1; PHP, C-terminal; KEGG: dvm:DvMF_2328 glycosyl transferase group 1 YP_390102.1 KEGG: dsa:Desal_2394 translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; PFAM: S1, IF1 type YP_390103.2 KEGG: dma:DMR_23200 hypothetical protein YP_004849570.1 KEGG: dvu:DVU0366 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_390104.1 KEGG: dvu:DVU0365 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase YP_390105.1 KEGG: dvl:Dvul_2620 glutamine amidotransferase class-I; PFAM: Glutamine amidotransferase class-I, C-terminal YP_390106.1 KEGG: dvm:DvMF_2315 chorismate binding-like protein; PFAM: Chorismate binding, C-terminal YP_390107.1 PFAM: Aminotransferase, class IV; KEGG: das:Daes_3323 class IV aminotransferase YP_390108.1 KEGG: dvm:DvMF_3196 hypothetical protein YP_390109.1 KEGG: dvu:DVU0071 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like YP_390111.2 PFAM: Metallophosphoesterase; KEGG: dvm:DvMF_2312 metallophosphoesterase YP_390112.1 KEGG: dvm:DvMF_2311 hypothetical protein YP_390113.1 KEGG: dvm:DvMF_2310 hypothetical protein YP_390115.2 PFAM: Outer membrane efflux protein; KEGG: dvm:DvMF_2365 outer membrane efflux protein YP_390116.1 KEGG: dsa:Desal_1095 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_390117.1 KEGG: dvl:Dvul_0282 MotA/TolQ/ExbB proton channel; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_390118.1 KEGG: dvl:Dvul_0281 biopolymer transport protein ExbD/TolR; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR YP_390119.1 TIGRFAM: Tol-Pal system, TolA; TonB, C-terminal; KEGG: dvm:DvMF_2362 protein TolA YP_390120.1 KEGG: dvm:DvMF_2360 Tol-Pal system beta propeller repeat protein TolB YP_390121.1 KEGG: dvm:DvMF_2359 peptidoglycan-associated lipoprotein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal YP_390123.1 TIGRFAM: Glutamate synthase (NADPH), homotetrameric; KEGG: dvl:Dvul_0766 oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region YP_390124.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: dvm:DvMF_0937 ferredoxin-NADP(+) reductase subunit alpha YP_390125.1 PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: drt:Dret_0778 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) YP_390126.1 TIGRFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: dvm:DvMF_2462 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate beta region YP_390127.1 TIGRFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; KEGG: das:Daes_2064 hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit alpha; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region YP_390128.1 KEGG: dbr:Deba_3065 hexapaptide repeat-containing transferase YP_390129.1 KEGG: das:Daes_0067 sulfate transporter; TIGRFAM: Sulphate anion transporter; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS YP_390133.1 KEGG: dvm:DvMF_2369 TPR repeat-containing protein YP_390134.1 TIGRFAM: Carbamoyl phosphate synthase, small subunit; KEGG: dvl:Dvul_0268 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal YP_390135.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: dvm:DvMF_2371 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase YP_390137.1 TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; HAMAP: Peptide chain release factor 3; KEGG: dvm:DvMF_2372 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2 YP_390140.1 TIGRFAM: Galactose-1-phosphate uridyl transferase, class I; KEGG: dsa:Desal_0508 galactose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, C-terminal; Galactose-1-phosphate uridyl transferase, N-terminal YP_390141.1 KEGG: dsa:Desal_0507 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase YP_390142.2 KEGG: dsa:Desal_0506 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_390143.1 KEGG: rmr:Rmar_0474 aldose 1-epimerase; PFAM: Aldose 1-epimerase YP_390144.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: dsa:Desal_0504 ABC transporter; SMART: ATPase, AAA+ type, core YP_390145.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dsa:Desal_0503 extracellular solute-binding protein family 1 YP_390146.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dsa:Desal_0502 binding-protein-dependent transport systems inner membrane component YP_390147.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dsa:Desal_0501 binding-protein-dependent transport systems inner membrane component YP_390148.1 KEGG: dvl:Dvul_2922 TraR/DksA family transcriptional regulator YP_390149.1 KEGG: dvm:DvMF_2169 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_390150.1 PFAM: Protein of unknown function DUF523; KEGG: dvl:Dvul_2924 hypothetical protein YP_390152.1 KEGG: dvm:DvMF_2171 hypothetical protein YP_390155.1 KEGG: dvm:DvMF_1143 flavodoxin; TIGRFAM: Flavodoxin, short chain; PFAM: Flavodoxin/nitric oxide synthase YP_390158.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: dvl:Dvul_2864 putrescine/spermidine ABC transporter ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2 YP_390159.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_1959 binding-protein-dependent transport systems inner membrane component YP_390160.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dvm:DvMF_1958 spermidine/putrescine ABC transporter membrane protein YP_390161.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dvm:DvMF_1957 extracellular solute-binding protein family 1 YP_390162.1 PFAM: Ferric-uptake regulator; KEGG: dvl:Dvul_0284 ferric uptake regulator family protein YP_390163.1 KEGG: sku:Sulku_2387 hypothetical protein YP_390164.1 KEGG: sku:Sulku_2385 acetyltransferase YP_390165.1 KEGG: mau:Micau_1844 asparagine synthase; TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_390166.1 PFAM: Glycosyl transferase, family 2; KEGG: npu:Npun_R1218 filamentous haemagglutinin outer membrane protein YP_390167.1 PFAM: Acylneuraminate cytidylyltransferase; KEGG: pcu:pc1566 hypothetical protein YP_390168.1 KEGG: mja:MJ_1064 galactoside acetyltransferase LacA YP_390169.1 KEGG: mta:Moth_0756 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain YP_390171.1 PFAM: ABC transporter-like; KEGG: dba:Dbac_3273 ABC transporter related; SMART: ATPase, AAA+ type, core YP_390172.1 KEGG: dsa:Desal_3624 hypothetical protein YP_390173.1 PFAM: HpcH/HpaI aldolase; KEGG: dvl:Dvul_2640 2-dehydro-3-deoxyglucarate aldolase YP_390174.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dvl:Dvul_2641 NAD-dependent epimerase/dehydratase YP_390175.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: dvm:DvMF_1900 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase YP_390176.1 KEGG: dvl:Dvul_2643 hexapaptide repeat-containing transferase YP_390177.1 KEGG: dvl:Dvul_2644 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_390178.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: dvm:DvMF_1903 haloacid dehalogenase domain protein hydrolase YP_390179.1 KEGG: sku:Sulku_2396 nad-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_390180.1 KEGG: das:Daes_1161 phosphonate metabolim protein, transferase hexapeptide repeat family YP_390181.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dvu:DVU0336 aminotransferase YP_390182.1 TIGRFAM: Glucose-1-phosphate cytidylyltransferase; KEGG: dvl:Dvul_2889 glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase YP_390183.1 TIGRFAM: CDP-glucose 4,6-dehydratase; KEGG: dvl:Dvul_2888 CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_390184.1 KEGG: dvm:DvMF_1910 polysaccharide biosynthesis domain-containing protein YP_390185.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dvm:DvMF_1911 DegT/DnrJ/EryC1/StrS aminotransferase YP_390186.1 PFAM: Glycosyl transferase, family 2; KEGG: dvu:DVU0076 glycosyl transferase group 2 family protein YP_390187.1 PFAM: Oligosaccharyl transferase, STT3 subunit; KEGG: dvm:DvMF_0846 hypothetical protein YP_390188.1 KEGG: vpe:Varpa_0123 hypothetical protein YP_390189.1 KEGG: dvm:DvMF_1888 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase YP_390190.1 KEGG: dma:DMR_26460 AraC family transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type; SMART: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC domain YP_390191.1 PFAM: Amino acid-binding ACT; KEGG: sfu:Sfum_2949 amino acid-binding ACT domain-containing protein YP_390192.1 PFAM: Protein of unknown function DUF711; KEGG: drt:Dret_0480 hypothetical protein YP_390193.1 KEGG: das:Daes_2035 export-like chaperone CsaA; TIGRFAM: Secretion chaperone CsaA; PFAM: tRNA-binding region YP_390195.2 KEGG: dvl:Dvul_2712 hypothetical protein YP_390196.1 KEGG: dvm:DvMF_2556 hypothetical protein YP_390197.1 KEGG: dvl:Dvul_2714 hypothetical protein YP_390198.1 PFAM: Cytochrome c, class III; KEGG: dma:DMR_42490 cytochrome c3 YP_390199.1 KEGG: dvm:DvMF_2553 hypothetical protein YP_390200.1 PFAM: UspA; KEGG: dvl:Dvul_2717 UspA domain-containing protein YP_390201.1 KEGG: dvl:Dvul_2718 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_390202.1 KEGG: dvm:DvMF_2551 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_390203.1 KEGG: dvl:Dvul_2720 multi-sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; PAS fold-4; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like YP_390205.1 KEGG: dvm:DvMF_2549 response regulator receiver sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like YP_390206.2 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; PAS fold-4; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_2548 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS YP_390207.1 KEGG: dvm:DvMF_2547 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_390209.1 KEGG: dvl:Dvul_1441 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_390210.1 PFAM: Protein of unknown function DUF318, transmembrane; KEGG: dvm:DvMF_2282 permease YP_390212.1 KEGG: dvm:DvMF_0595 phosphonate ABC transporter, inner membrane subunit; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component YP_390213.1 KEGG: dvl:Dvul_1232 phosphonate ABC transporter inner membrane protein; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component YP_390214.1 KEGG: dvm:DvMF_0597 phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter-like YP_390215.1 KEGG: dma:DMR_p1_00100 transposase for insertion sequence element YP_390216.1 KEGG: dvu:DVU2006 hypothetical protein YP_390217.1 PFAM: ABC transporter-like; KEGG: dvl:Dvul_1231 phosphonate ABC transporter ATPase YP_390218.1 TIGRFAM: Phosphonate-binding periplasmic protein; KEGG: dvl:Dvul_1230 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_390219.1 KEGG: lip:LI0060 transcriptional regulators of sugar metabolism; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_390220.1 KEGG: dvm:DvMF_0599 HAD-superfamily hydrolase, subfamily IIA; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase YP_390221.1 KEGG: azl:AZL_e03080 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase YP_390223.2 PFAM: Alpha/beta hydrolase fold-1; KEGG: mac:MA1857 hypothetical protein YP_390224.1 SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: dsa:Desal_3742 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_390225.2 KEGG: dsa:Desal_3743 GAF sensor protein; PFAM: GAF; SMART: GAF YP_390227.1 KEGG: drt:Dret_1630 hypothetical protein YP_390228.1 TIGRFAM: PAS; PFAM: Transcription regulator LuxR, C-terminal; PAS fold; KEGG: das:Daes_0841 regulatory protein LuxR; SMART: Transcription regulator LuxR, C-terminal YP_390230.1 KEGG: das:Daes_0842 family 3 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_390231.1 KEGG: das:Daes_0843 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_390232.1 PFAM: ABC transporter-like; KEGG: das:Daes_0844 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_390237.2 KEGG: epy:EpC_06760 ATPase domain protein YP_390240.2 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: azo:azo2622 hypothetical protein; SMART: Diguanylate cyclase, predicted YP_390242.1 PFAM: Cytochrome c, class III; KEGG: dvm:DvMF_1731 cytochrome c class III YP_390243.1 TIGRFAM: [Ni-Fe]-hydrogenase, small subunit; Twin-arginine translocation pathway, signal sequence; KEGG: dvl:Dvul_0719 hydrogenase (NiFe) small subunit HydA; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit YP_390244.1 KEGG: dvm:DvMF_1733 nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase, large subunit YP_390246.2 KEGG: dvl:Dvul_2627 hypothetical protein YP_390248.1 PFAM: Uncharacterized protein family UPF0150; KEGG: dvu:DVU4002 hypothetical protein YP_390253.1 KEGG: dsa:Desal_0889 glutaredoxin YP_390255.1 KEGG: dvl:Dvul_2948 prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase YP_390256.1 KEGG: dvm:DvMF_2132 translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; PFAM: S1, IF1 type YP_390259.1 KEGG: dvm:DvMF_2117 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_390260.1 KEGG: dvl:Dvul_0115 hypothetical protein YP_390261.1 PFAM: Uncharacterized protein family UPF0153; KEGG: dvl:Dvul_0114 hypothetical protein YP_390262.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: das:Daes_2030 ferredoxin I YP_390263.2 PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: dvm:DvMF_2121 2-alkenal reductase; SMART: PDZ/DHR/GLGF YP_390264.1 TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic; KEGG: dvl:Dvul_0111 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like, core YP_390265.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dvm:DvMF_2110 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_390266.1 KEGG: dvm:DvMF_2134 MerR family transcriptional regulator YP_390267.1 PFAM: Putitive phosphate transport regulator; KEGG: das:Daes_0822 phosphate transport regulator YP_390268.1 PFAM: Phosphate transporter; KEGG: das:Daes_0821 phosphate transporter YP_390269.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: dvm:DvMF_2133 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; HAMP linker domain YP_390271.1 PFAM: Peptidase M23; KEGG: dvm:DvMF_2080 peptidase M23