-- dump date 20120504_143421 -- class Genbank::CDS -- table cds_note -- id note YP_002989612.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0031 chromosome segregation ATPase YP_002989613.1 KEGG: dvm:DvMF_2046 hypothetical protein YP_002989614.1 KEGG: dvm:DvMF_2045 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_002989615.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: dvu:DVU3361 ADP-heptose synthase YP_002989616.1 PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; KEGG: sfu:Sfum_2453 serine phosphatase YP_002989617.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_0024 anti-anti-sigma regulatory factor, SpoIIAA YP_002989618.1 PFAM: protein of unknown function DUF140; KEGG: dde:Dde_0023 transporter YP_002989619.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvl:Dvul_1817 ABC transporter YP_002989620.1 PFAM: mammalian cell entry related domain protein; KEGG: dde:Dde_0021 ABC-type transport system involved in resistance to organic solvents periplasmic component-like YP_002989621.1 KEGG: dde:Dde_0020 hypothetical protein YP_002989622.1 KEGG: dvl:Dvul_0033 hypothetical protein YP_002989624.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate YP_002989626.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2966 HD domain-containing protein YP_002989627.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: dvm:DvMF_1426 dihydroorotase, multifunctional complex type YP_002989628.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002989629.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dvu:DVU2900 amidohydrolase family protein YP_002989630.1 KEGG: rfr:Rfer_2233 hypothetical protein YP_002989631.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: dal:Dalk_1232 signal peptide peptidase SppA, 36K type YP_002989632.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ara:Arad_1644 amino acid efflux protein YP_002989634.1 KEGG: dvm:DvMF_1527 hypothetical protein YP_002989635.1 PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: msl:Msil_3170 phospholipase D/transphosphatidylase YP_002989636.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: bxe:Bxe_C1377 cyclic nucleotide-binding protein YP_002989637.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_2075 MotA/TolQ/ExbB proton channel YP_002989638.1 PFAM: OmpA/MotB domain protein; KEGG: maq:Maqu_0313 flagellar motor protein MotB YP_002989639.1 PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_3114 glycosyl transferase, family 2 YP_002989640.1 PFAM: YdjC family protein; KEGG: sfu:Sfum_3115 YdjC family protein YP_002989642.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: gbm:Gbem_1225 lysine exporter protein (LysE/YggA) YP_002989643.1 PFAM: peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: sfu:Sfum_1661 peptidase M16C associated domain protein YP_002989644.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dvm:DvMF_0219 peroxiredoxin YP_002989645.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_0009 hypothetical protein YP_002989646.1 PFAM: 17 kDa surface antigen; KEGG: dps:DP0122 17 kDa surface antigen YP_002989647.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dde:Dde_1279 methyl-accepting chemotaxis sensory transducer YP_002989648.1 PFAM: MOFRL domain protein; KEGG: dvu:DVU0765 hydroxypyruvate reductase YP_002989649.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: esa:ESA_03613 transcriptional regulator NanR YP_002989650.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: pca:Pcar_1355 methyl-accepting chemotaxis protein (MCP) YP_002989651.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: pol:Bpro_5441 methylase involved in ubiquinone/menaquinone biosynthesis-like YP_002989652.1 KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase YP_002989653.1 PFAM: protein of unknown function DUF399; KEGG: dde:Dde_0541 PDZ/DHR/GLGF YP_002989654.1 KEGG: dde:Dde_0542 DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; zinc finger Fpg domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding YP_002989655.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_0543 integral membrane protein MviN YP_002989656.1 PFAM: methyltransferase type 11; methyltransferase small; methyltransferase type 12; RNA methylase; KEGG: dde:Dde_3501 hypothetical protein YP_002989657.1 KEGG: met:M446_6288 ATPase involved in DNA repair-like protein YP_002989658.1 KEGG: met:M446_6289 hypothetical protein YP_002989659.1 KEGG: mno:Mnod_7213 hypothetical protein YP_002989660.1 KEGG: mno:Mnod_7212 ATPase involved in DNA repair-like protein YP_002989661.1 PFAM: glycosyl transferase family 39; KEGG: dde:Dde_3122 dolichyl-phosphate-mannose-protein mannosyltransferase family protein YP_002989662.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dvl:Dvul_0085 DNA binding domain-containing protein YP_002989663.1 KEGG: dvm:DvMF_1369 hypothetical protein YP_002989664.1 KEGG: vpa:VP0124 hypothetical protein YP_002989665.1 TIGRFAM: methyltransferase FkbM family; KEGG: ade:Adeh_2528 methyltransferase FkbM YP_002989666.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dvl:Dvul_1291 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_002989667.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pca:Pcar_0508 hemerythrin YP_002989668.1 PFAM: heat shock protein Hsp20; KEGG: dvm:DvMF_2959 heat shock protein HSP20 YP_002989669.1 PFAM: heat shock protein Hsp20; KEGG: dvm:DvMF_2958 heat shock protein HSP20 YP_002989670.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2668 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_002989671.1 PFAM: protein of unknown function DUF343; KEGG: dvu:DVU0656 hypothetical protein YP_002989672.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dds:Ddes_1744 PHP domain protein YP_002989673.1 PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase YP_002989674.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dvm:DvMF_2848 CBS domain containing membrane protein YP_002989675.1 PFAM: SEC-C motif domain protein; KEGG: dal:Dalk_1685 sec-C motif domain protein YP_002989676.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_0204 hypothetical protein YP_002989677.1 PFAM: class I peptide chain release factor; KEGG: sfu:Sfum_2311 class I peptide chain release factor YP_002989678.1 PFAM: OmpA/MotB domain protein; KEGG: nam:NAMH_1356 major outer membrane protein YP_002989679.1 PFAM: regulatory protein TetR; KEGG: sbp:Sbal223_2834 transcriptional regulator, TetR family YP_002989680.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0671 secretion protein HlyD YP_002989681.1 PFAM: acriflavin resistance protein; KEGG: dde:Dde_0670 AcrB/AcrD/AcrF family transporter YP_002989682.1 PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: dde:Dde_1625 formylmethanofuran dehydrogenase, subunit E YP_002989683.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1624 ATPase YP_002989684.1 PFAM: ABC transporter permease; ABC transporter; KEGG: dde:Dde_1623 iron(III) dicitrate ABC transporter permease YP_002989685.1 PFAM: periplasmic binding protein; KEGG: dal:Dalk_5080 periplasmic binding protein YP_002989686.1 KEGG: hch:HCH_01938 uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis YP_002989687.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pau:PA14_56370 hypothetical protein YP_002989688.1 KEGG: dvm:DvMF_0796 calcium-binding EF-hand-containing protein YP_002989689.1 SMART: integrin; KEGG: hypothetical protein YP_002989690.1 KEGG: gur:Gura_0744 integral membrane sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Diverse 7TM receptor transmembrane region; glycoside hydrolase family 2 sugar binding; PAS fold domain protein; SMART: PAS domain containing protein YP_002989691.1 PFAM: Ferritin Dps family protein; KEGG: dvm:DvMF_0183 ferroxidase YP_002989692.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: dde:Dde_3205 cytochrome d ubiquinol oxidase, subunit II YP_002989693.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase, subunit I YP_002989694.1 KEGG: dal:Dalk_2376 hypothetical protein YP_002989695.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3195 rubredoxin-oxygen oxidoreductase YP_002989696.1 PFAM: rubredoxin-type Fe(Cys)4 protein; KEGG: dal:Dalk_2372 rubredoxin-type Fe(Cys)4 protein YP_002989697.1 PFAM: rubredoxin-type Fe(Cys)4 protein; KEGG: dol:Dole_2644 rubredoxin-type Fe(Cys)4 protein YP_002989698.1 TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dvl:Dvul_0204 desulfoferrodoxin YP_002989699.1 PFAM: rubrerythrin; KEGG: dal:Dalk_2366 rubrerythrin YP_002989700.1 PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein YP_002989701.1 PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: dde:Dde_2822 response regulator receiver domain-containing protein YP_002989702.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dvl:Dvul_2222 acetate--CoA ligase YP_002989703.1 PFAM: protein of unknown function DUF47; KEGG: dde:Dde_3780 phosphate transport regulator-like YP_002989704.1 PFAM: phosphate transporter; KEGG: dde:Dde_3781 sodium/phosphate symporter YP_002989705.1 KEGG: dvm:DvMF_2133 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein YP_002989706.1 KEGG: dde:Dde_1017 hypothetical protein YP_002989707.1 PFAM: surface antigen variable number repeat protein; KEGG: pmy:Pmen_1058 TPR repeat-containing protein YP_002989708.1 PFAM: glycosyl transferase family 39; KEGG: amc:MADE_00382 glycosyl transferase, family 39 YP_002989709.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_002989710.1 PFAM: FeoA family protein; KEGG: dde:Dde_0496 hypothetical protein YP_002989711.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; KEGG: dde:Dde_0495 heavy metal translocating P-type ATPase YP_002989713.1 KEGG: dde:Dde_0493 hypothetical protein YP_002989714.1 KEGG: GH16738 gene product from transcript GH16738-RA YP_002989715.1 KEGG: dde:Dde_0490 hypothetical protein YP_002989716.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; KEGG: dde:Dde_0489 heavy metal translocating P-type ATPase YP_002989717.1 KEGG: dde:Dde_0492 hypothetical protein YP_002989718.1 PFAM: ferric-uptake regulator; KEGG: dvl:Dvul_2043 ferric uptake regulator family protein YP_002989719.1 KEGG: dde:Dde_0499 hypothetical protein YP_002989720.1 KEGG: dvm:DvMF_1514 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002989721.1 PFAM: FeoA family protein; KEGG: avn:Avin_22720 ferrous iron transport protein A YP_002989722.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: dal:Dalk_2738 ferrous iron transport protein B YP_002989723.1 KEGG: dds:Ddes_0647 hypothetical protein YP_002989724.1 KEGG: dds:Ddes_0648 hypothetical protein YP_002989725.1 KEGG: hha:Hhal_1598 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: haloacid dehalogenase; amino acid-binding ACT domain protein; HAD-superfamily hydrolase subfamily IB hypothetical 1; haloacid dehalogenase type 3 YP_002989726.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dvm:DvMF_2789 histidine kinase YP_002989727.1 PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dvm:DvMF_2676 phage repressor YP_002989728.1 KEGG: sfu:Sfum_2737 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_002989730.1 PFAM: nucleoside recognition domain protein; KEGG: dvm:DvMF_2667 hypothetical protein YP_002989732.1 PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; KEGG: dde:Dde_2388 3'-5' exonuclease YP_002989733.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: pca:Pcar_0583 peptide chain release factor 3 YP_002989735.1 KEGG: bpy:Bphyt_1683 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; tyrosine protein kinase; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; serine/threonine protein kinase; PAC repeat-containing protein; GAF domain protein YP_002989736.1 PFAM: high-affinity nickel-transporter; KEGG: dde:Dde_0285 ABC-type uncharacterized transport system permease component-like YP_002989737.1 KEGG: dde:Dde_0284 ABC-type uncharacterized transport system periplasmic component-like YP_002989738.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator YP_002989739.1 TIGRFAM: YD repeat protein; KEGG: sfu:Sfum_4063 NHL repeat containing protein YP_002989740.1 KEGG: dal:Dalk_0272 hypothetical protein YP_002989742.1 PFAM: regulatory protein TetR; KEGG: dal:Dalk_2333 transcriptional regulator, TetR family YP_002989743.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_002989744.1 TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dde:Dde_3078 Fe-S cluster assembly protein NifU YP_002989745.1 KEGG: dvm:DvMF_2659 cysteine desulfurase NifS; TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_002989746.1 TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: gme:Gmet_1558 cysteine synthase YP_002989747.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: dvu:DVU0662 serine O-acetyltransferase YP_002989748.1 PFAM: plasmid stabilization system; KEGG: eca:ECA2758 hypothetical protein YP_002989749.1 KEGG: eca:ECA2757 hypothetical protein YP_002989750.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: glo:Glov_1080 peptidase C14 caspase catalytic subunit P20 YP_002989751.1 KEGG: smt:Smal_3995 hypothetical protein YP_002989752.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002989753.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002989754.1 KEGG: dvl:Dvul_0029 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_002989755.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: dvl:Dvul_0030 methionyl-tRNA formyltransferase YP_002989756.1 PFAM: protein of unknown function DUF116; KEGG: dvl:Dvul_0031 hypothetical protein YP_002989757.1 PFAM: NusB/RsmB/TIM44; Fmu (Sun) domain protein; KEGG: dde:Dde_0017 sun protein YP_002989758.1 PFAM: TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dvm:DvMF_1136 hypothetical protein YP_002989759.1 PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sfu:Sfum_0869 transcriptional regulator, XRE family YP_002989760.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dal:Dalk_3272 AMP-dependent synthetase and ligase YP_002989761.1 PFAM: cupin; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dvl:Dvul_0992 cupin 2 domain-containing protein YP_002989762.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2317 AMP-binding protein YP_002989763.1 KEGG: hch:HCH_00875 hypothetical protein YP_002989764.1 PFAM: methyltransferase type 11; regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: geo:Geob_2054 transcriptional regulator, MerR family YP_002989765.1 KEGG: tau:Tola_1401 protein of unknown function DUF307 YP_002989766.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: rfe:RF_1308 Fic YP_002989767.1 KEGG: dde:Dde_0088 hypothetical protein YP_002989768.1 PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dde:Dde_0539 protein-L-isoaspartate methyltransferase-like YP_002989769.1 PFAM: radical SAM domain protein; KEGG: dde:Dde_0538 radical SAM domain-containing protein YP_002989770.1 KEGG: dde:Dde_0537 ribonuclease E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_002989771.1 PFAM: protein of unknown function DUF208; KEGG: dvm:DvMF_2375 protein of unknown function DUF208 YP_002989772.1 PFAM: UspA domain protein; KEGG: dde:Dde_2827 hypothetical protein YP_002989773.1 KEGG: dde:Dde_0536 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002989775.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: dal:Dalk_3477 peptidase C14 caspase catalytic subunit P20 YP_002989776.1 PFAM: protein of unknown function DUF323; KEGG: sfu:Sfum_0556 peptidase C14, caspase catalytic subunit P20 YP_002989777.1 PFAM: protein of unknown function DUF323; KEGG: dal:Dalk_3476 protein of unknown function DUF323 YP_002989778.1 KEGG: cko:CKO_00754 hypothetical protein; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like YP_002989779.1 KEGG: dde:Dde_2947 HflC protein; TIGRFAM: HflC protein; PFAM: band 7 protein; SMART: band 7 protein YP_002989780.1 KEGG: dvl:Dvul_2279 HflK protein; TIGRFAM: HflK protein; PFAM: band 7 protein; SMART: band 7 protein YP_002989781.1 PFAM: radical SAM domain protein; KEGG: bgl:bglu_2g06740 hypothetical protein YP_002989782.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: dde:Dde_2945 phosphomannomutase YP_002989783.1 KEGG: dde:Dde_2942 hypothetical protein YP_002989784.1 PFAM: ribonuclease H; KEGG: dvl:Dvul_2274 ribonuclease H YP_002989785.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; KEGG: ecg:E2348C_0643 phosphotransferase YP_002989786.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: dvm:DvMF_0909 cytidylate kinase YP_002989787.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dvl:Dvul_1964 histidinol-phosphate aminotransferase YP_002989788.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: dal:Dalk_0200 GTPase EngC YP_002989789.1 PFAM: UspA domain protein; KEGG: dvm:DvMF_0906 UspA domain protein YP_002989790.1 KEGG: dvl:Dvul_1962 hypothetical protein YP_002989791.1 PFAM: polysulphide reductase NrfD; KEGG: dvu:DVU1286 reductase, transmembrane subunit YP_002989792.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2274 reductase, iron-sulfur binding subunit YP_002989793.1 KEGG: dde:Dde_2273 cytochrome c family protein YP_002989794.1 KEGG: dde:Dde_2272 reductase, iron-sulfur binding subunit YP_002989795.1 PFAM: nitrate reductase subunit gamma; KEGG: dvm:DvMF_0070 nitrate reductase gamma subunit YP_002989796.1 KEGG: sfu:Sfum_1145 hypothetical protein YP_002989797.1 TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: dvl:Dvul_0164 sugar fermentation stimulation protein YP_002989798.1 PFAM: thioesterase superfamily protein; KEGG: dvm:DvMF_2309 thioesterase superfamily protein YP_002989799.1 KEGG: dde:Dde_3593 hypothetical protein YP_002989801.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_2927 protein of unknown function DUF224 cysteine-rich region domain protein YP_002989803.1 KEGG: dvm:DvMF_2888 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_002989804.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dde:Dde_1099 30S ribosomal protein S16 YP_002989805.1 KEGG: dde:Dde_1098 hypothetical protein YP_002989806.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: dde:Dde_1097 16S rRNA processing protein RimM YP_002989807.1 KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_002989808.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002989809.1 PFAM: ribonuclease HII/HIII; KEGG: dds:Ddes_1791 ribonuclease H YP_002989810.1 PFAM: protein of unknown function UPF0102; KEGG: dvl:Dvul_2148 hypothetical protein YP_002989811.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_1092 hypothetical protein YP_002989813.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: dvm:DvMF_2878 phosphotransferase system, phosphocarrier protein HPr YP_002989814.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: dde:Dde_1088 SsrA-binding protein YP_002989816.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gur:Gura_1198 LysR family transcriptional regulator YP_002989817.1 PFAM: FAD linked oxidase domain protein; KEGG: dvu:DVU0827 glycolate oxidase, subunit GlcD YP_002989818.1 KEGG: dde:Dde_1085 glycolate oxidase, iron-sulfur subunit YP_002989819.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002989820.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dde:Dde_1077 methyl-accepting chemotaxis sensory transducer YP_002989821.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: pca:Pcar_3029 hypothetical protein YP_002989823.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: pca:Pcar_1503 phosphoesterase YP_002989824.1 PFAM: VacJ family lipoprotein; KEGG: sat:SYN_01266 surface lipoprotein YP_002989825.1 PFAM: toluene tolerance family protein; KEGG: glo:Glov_3185 toluene tolerance family protein YP_002989826.1 PFAM: mammalian cell entry related domain protein; KEGG: dde:Dde_2299 ABC transport system substrate-binding protein YP_002989827.1 PFAM: protein of unknown function DUF140; KEGG: dvu:DVU1246 hypothetical protein YP_002989828.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1504 metal dependent phosphohydrolase YP_002989829.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_002989830.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dde:Dde_1407 peptidyl-prolyl cis-trans isomerse domain-containing protein YP_002989831.1 Catalyzes the conversion of citrate to isocitrate YP_002989832.1 KEGG: dvm:DvMF_2890 hypothetical protein YP_002989833.1 KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like YP_002989834.1 KEGG: dps:DP1472 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase YP_002989835.1 TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1109 adenylylsulfate reductase subunit beta YP_002989836.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite YP_002989837.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvm:DvMF_2894 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002989838.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_2134 methyl-viologen-reducing hydrogenase, delta subunit YP_002989839.1 KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit YP_002989840.1 KEGG: dvl:Dvul_2132 hypothetical protein YP_002989841.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bbr:BB2028 ABC transport protein, ATP-binding component YP_002989842.1 PFAM: extracellular ligand-binding receptor; KEGG: sme:SMc01946 leucine-specific binding protein precursor YP_002989843.1 PFAM: inner-membrane translocator; KEGG: maq:Maqu_3336 inner-membrane translocator YP_002989844.1 PFAM: inner-membrane translocator; KEGG: sat:SYN_00787 branched-chain amino acid ABC transporter permease YP_002989845.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvm:DvMF_2611 ABC transporter YP_002989846.1 PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_00708 amino acid ABC transporter periplasmic protein YP_002989847.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0286 ferredoxin II YP_002989848.1 KEGG: dvm:DvMF_0505 hypothetical protein YP_002989849.1 KEGG: dvm:DvMF_3081 hypothetical protein YP_002989850.1 TIGRFAM: flagellar export protein FliJ; KEGG: dvm:DvMF_1393 flagellar export protein FliJ YP_002989851.1 KEGG: dvm:DvMF_1394 hypothetical protein YP_002989852.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002989854.1 PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1534 polymerase YP_002989855.1 KEGG: dvl:Dvul_2239 hypothetical protein YP_002989856.1 TIGRFAM: valyl-tRNA synthetase; KEGG: dde:Dde_2839 valyl-tRNA synthetase YP_002989857.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen III synthase HEM4; KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase YP_002989858.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: dde:Dde_2835 phosphoribosylglycinamide formyltransferase YP_002989859.1 PFAM: aminoglycoside phosphotransferase; KEGG: dat:HRM2_21240 phosphotransferase family protein YP_002989860.1 PFAM: AMMECR1 domain protein; KEGG: dvm:DvMF_2774 AMMECR1 domain protein YP_002989861.1 PFAM: cysteine-rich small domain; KEGG: rpa:RPA0994 hypothetical protein YP_002989862.1 PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; KEGG: dal:Dalk_1872 protein serine/threonine phosphatase YP_002989863.1 KEGG: sfu:Sfum_2170 glucose-1-phosphate thymidylyltransferase, long form YP_002989865.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rpe:RPE_4584 MscS mechanosensitive ion channel YP_002989866.1 KEGG: dvl:Dvul_2561 hypothetical protein YP_002989867.1 KEGG: dps:DP0230 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002989868.1 PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3175 hypothetical protein YP_002989869.1 KEGG: dde:Dde_0886 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein YP_002989870.1 KEGG: dvm:DvMF_1177 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_002989871.1 KEGG: dde:Dde_0803 precorrin-6Y C5,15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_002989873.1 TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: dvu:DVU2750 cobalamin biosynthesis protein CbiD YP_002989874.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_3621 DNA-directed DNA polymerase YP_002989875.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid ac-diamide synthase; KEGG: dal:Dalk_0444 cobyrinic acid a,c-diamide synthase YP_002989876.1 PFAM: TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dvl:Dvul_2082 TPR repeat-containing protein YP_002989877.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dvl:Dvul_0569 tRNA/rRNA methyltransferase (SpoU) YP_002989881.1 PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dvl:Dvul_0949 methyl-accepting chemotaxis sensory transducer YP_002989882.1 KEGG: dde:Dde_0551 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase YP_002989883.1 TIGRFAM: methyltransferase FkbM family; KEGG: nmu:Nmul_A1173 methyltransferase FkbM YP_002989884.1 KEGG: dvm:DvMF_2100 hypothetical protein YP_002989885.1 KEGG: hypothetical protein LOC553381 YP_002989886.1 KEGG: dvm:DvMF_0606 hypothetical protein YP_002989887.1 KEGG: dde:Dde_0088 hypothetical protein YP_002989888.1 KEGG: dde:Dde_0088 hypothetical protein YP_002989889.1 KEGG: pca:Pcar_2120 hypothetical protein YP_002989890.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3523 alcohol dehydrogenase, iron-containing YP_002989891.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; redoxin; KEGG: sfu:Sfum_2548 redoxin domain protein YP_002989892.1 KEGG: dvl:Dvul_0301 redoxin domain-containing protein YP_002989893.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: dde:Dde_3536 two component Fis family transcriptional regulator YP_002989894.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3535 histidine kinase YP_002989895.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3534 alcohol dehydrogenase, iron-containing YP_002989896.1 PFAM: phosphoglycerate mutase; KEGG: dvl:Dvul_1583 phosphoglycerate mutase YP_002989897.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvm:DvMF_0634 metal dependent phosphohydrolase YP_002989898.1 PFAM: protein of unknown function DUF182; KEGG: dps:DP0263 hypothetical protein YP_002989899.1 KEGG: dps:DP0264 coenzyme F390 synthetase YP_002989900.1 PFAM: radical SAM domain protein; KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB YP_002989901.1 KEGG: dde:Dde_3543 hypothetical protein YP_002989902.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: dvu:DVU1556 hypothetical protein YP_002989903.1 KEGG: dde:Dde_3541 hypothetical protein YP_002989904.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dps:DP0269 Fe-S oxidoreductase YP_002989905.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dps:DP0270 aldehyde oxidoreductase YP_002989906.1 PFAM: molybdopterin binding domain; KEGG: dps:DP0271 molybdopterin biosynthesis protein YP_002989907.1 KEGG: dps:DP0463 hypothetical protein YP_002989908.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0464 molybdenum ABC transporter permease YP_002989909.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; KEGG: dps:DP0465 molybdenum ABC transporter periplasmic substrate-binding protein YP_002989910.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dps:DP0466 molybdenum ABC-transporter ATP-binding protein YP_002989911.1 TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3519 molybdate ABC transporter permease YP_002989912.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_3518 molybdenum ABC transporter periplasmic molybdate-binding protein YP_002989913.1 PFAM: TOBE domain protein; integrase family protein; KEGG: dde:Dde_3517 molybdenum-pterin binding domain-containing protein YP_002989914.1 KEGG: dde:Dde_0088 hypothetical protein YP_002989915.1 KEGG: hch:HCH_00210 ABC-type sugar transport system, periplasmic component YP_002989916.1 PFAM: redoxin; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dvl:Dvul_1832 redoxin domain-containing protein YP_002989917.1 KEGG: hypothetical protein YP_002989919.1 KEGG: dde:Dde_3444 hypothetical protein YP_002989920.1 KEGG: dvl:Dvul_2955 hypothetical protein YP_002989922.1 KEGG: hypothetical protein YP_002989923.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: avi:Avi_9816 type IV secretion protein AvhB6 YP_002989924.1 PFAM: CopG domain protein DNA-binding domain protein YP_002989926.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: lip:LI0734 hypothetical protein YP_002989928.1 KEGG: ankyrin repeat protein YP_002989929.1 KEGG: pla:Plav_2049 hypothetical protein YP_002989930.1 KEGG: smd:Smed_1227 hypothetical protein YP_002989931.1 KEGG: smd:Smed_1228 hypothetical protein YP_002989933.1 PFAM: integrase family protein; KEGG: vha:VIBHAR_00841 integrase YP_002989934.1 PFAM: major facilitator superfamily MFS_1; KEGG: glo:Glov_0879 major facilitator superfamily MFS_1 YP_002989935.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_002989936.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_002989937.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein; KEGG: mmw:Mmwyl1_1713 NADH:ubiquinone oxidoreductase, subunit C YP_002989938.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit; KEGG: vpa:VP2348 Na(+)-translocating NADH-quinone reductase subunit D YP_002989939.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit; KEGG: psa:PST_2651 Na(+)-translocating NADH-quinone reductase subunit E YP_002989940.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_002989941.1 PFAM: ApbE family lipoprotein; KEGG: csa:Csal_1575 ApbE-like lipoprotein YP_002989942.1 KEGG: vfm:VFMJ11_1528 periplasmic protein YP_002989943.1 KEGG: slo:Shew_0560 hypothetical protein YP_002989944.1 KEGG: sfu:Sfum_3176 hypothetical protein YP_002989945.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dps:DP0335 glcerophosphoryl diester phosphodiesterase YP_002989946.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: asu:Asuc_0156 TRAP dicarboxylate transporter DctM subunit YP_002989947.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sit:TM1040_3196 hypothetical protein YP_002989948.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: spe:Spro_4705 TRAP dicarboxylate transporter DctP subunit YP_002989949.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: bph:Bphy_7452 LacI family transcription regulator YP_002989950.1 KEGG: mxa:MXAN_5359 metallo-beta-lactamase family protein YP_002989951.1 KEGG: dvm:DvMF_2548 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein YP_002989952.1 KEGG: dvl:Dvul_2720 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein YP_002989953.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dol:Dole_2257 response regulator receiver protein YP_002989954.1 KEGG: dvl:Dvul_1202 hypothetical protein YP_002989955.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvm:DvMF_0624 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002989956.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; rhodanese domain protein; SMART: rhodanese domain protein; KEGG: dde:Dde_0374 rhodanese-like protein YP_002989957.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_3112 BadM/Rrf2 family transcriptional regulator YP_002989958.1 TIGRFAM: TonB family protein; KEGG: dvl:Dvul_0505 TonB family protein YP_002989959.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dvl:Dvul_0506 biopolymer transport protein ExbD/TolR YP_002989960.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dvu:DVU2806 MotA/TolQ/ExbB proton channel family protein YP_002989961.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: dvl:Dvul_0508 cobalamin synthesis protein, P47K YP_002989962.1 KEGG: dvl:Dvul_0509 metallo-beta-lactamase family protein YP_002989963.1 KEGG: dde:Dde_1615 hypothetical protein YP_002989964.1 KEGG: dvl:Dvul_0511 hypothetical protein YP_002989965.1 PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: dvl:Dvul_0512 regulatory protein GntR, HTH YP_002989966.1 KEGG: dde:Dde_1612 hypothetical protein YP_002989967.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: dps:DP0481 formate dehydrogenase, chain A YP_002989968.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0474 electron transport protein YP_002989969.1 KEGG: dde:Dde_0475 ferredoxin hydrogenase; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002989970.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spe:Spro_2425 electron transport protein HydN YP_002989971.1 KEGG: pfl:PFL_0687 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein YP_002989972.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dvm:DvMF_2679 two component, sigma54 specific, transcriptional regulator, fis family YP_002989973.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_002989974.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_002989975.1 PFAM: dihydrouridine synthase DuS; KEGG: dde:Dde_3089 dihydrouridine synthase family protein YP_002989976.1 KEGG: dde:Dde_0683 cytochrome c family protein YP_002989977.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: dde:Dde_0682 hypothetical protein YP_002989978.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0681 Fe-S-cluster-containing hydrogenase components 1-like YP_002989979.1 KEGG: dde:Dde_0680 formate dehydrogenase gamma subunit YP_002989980.1 PFAM: rhodanese domain protein; SMART: rhodanese domain protein; KEGG: dde:Dde_0679 rhodanese-like protein YP_002989981.1 KEGG: dde:Dde_0678 rhodanese-like protein YP_002989983.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: dde:Dde_0677 hypothetical protein YP_002989984.1 PFAM: protein of unknown function DUF156; KEGG: dde:Dde_0676 hypothetical protein YP_002989985.1 KEGG: dat:HRM2_35060 hypothetical protein YP_002989986.1 PFAM: formylmethanofuran dehydrogenase subunit E region; molybdopterin binding domain; KEGG: dde:Dde_0685 tungsten formylmethanofuran dehydrogenase family protein/molybdopterin binding protein YP_002989987.1 involved in regulation of intracellular pH under alkaline conditions YP_002989988.1 PFAM: citrate transporter; TrkA-C domain protein; KEGG: dal:Dalk_1272 TrkA-C domain protein YP_002989990.1 PFAM: peptidase S16 lon domain protein; response regulator receiver; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dvm:DvMF_2107 response regulator receiver protein YP_002989991.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dvl:Dvul_0090 two component, sigma54 specific, Fis family transcriptional regulator YP_002989992.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: dvl:Dvul_0091 integral membrane sensor signal transduction histidine kinase YP_002989993.1 PFAM: thioesterase superfamily protein; KEGG: pca:Pcar_1879 hypothetical protein YP_002989994.1 KEGG: hypothetical protein YP_002989996.1 TIGRFAM: general secretion pathway protein H; KEGG: noc:Noc_2892 general secretion pathway protein H YP_002989997.1 KEGG: pfs:PFLU2418 type II secretion system, exported protein I YP_002989998.1 PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: bra:BRADO2400 serine protease DO-like precursor YP_002989999.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: gur:Gura_0680 general secretion pathway protein G YP_002990000.1 KEGG: net:Neut_1835 prepilin-type cleavage/methylation-like YP_002990001.1 KEGG: sat:SYN_01554 general secretory pathway protein K YP_002990002.1 PFAM: fimbrial assembly family protein YP_002990003.1 KEGG: pfo:Pfl01_4931 sulfonate/nitrate transport system substrate-binding protein YP_002990004.1 KEGG: aav:Aave_3965 protease Do YP_002990005.1 PFAM: type II and III secretion system protein; NolW domain protein; KEGG: sat:SYN_01548 general secretion pathway protein D YP_002990006.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: ATPase AAA; KEGG: gur:Gura_0682 general secretory pathway protein E YP_002990007.1 PFAM: type II secretion system protein; KEGG: gme:Gmet_1395 type II secretion system protein YP_002990008.1 PFAM: DSBA oxidoreductase; KEGG: dvl:Dvul_2927 DsbA oxidoreductase YP_002990009.1 KEGG: dvm:DvMF_1530 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_002990010.1 KEGG: dat:HRM2_02360 hypothetical protein YP_002990011.1 PFAM: glycosyl transferase group 1; KEGG: dat:HRM2_02350 glycogen synthase (starch [bacterial glycogen] synthase) YP_002990012.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1205 hypothetical protein YP_002990013.1 PFAM: sodium/sulfate symporter; citrate transporter; KEGG: dde:Dde_1204 di- and tricarboxylate transporters-like YP_002990014.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: dde:Dde_1203 thioredoxin reductase YP_002990015.1 PFAM: Thioredoxin domain; KEGG: dde:Dde_1202 thioredoxin YP_002990016.1 PFAM: sulfatase; KEGG: dde:Dde_1201 sulfatase YP_002990017.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dde:Dde_1200 CRP/FNR family transcriptional regulator YP_002990018.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dvl:Dvul_2039 two component, sigma54 specific, Fis family transcriptional regulator YP_002990019.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase YP_002990021.1 KEGG: dvm:DvMF_1362 hypothetical protein YP_002990022.1 PFAM: hypothetical protein; KEGG: dde:Dde_0876 hypothetical protein YP_002990023.1 TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; KEGG: gsu:GSU3167 hypothetical protein YP_002990024.1 TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: hypothetical protein; KEGG: bpt:Bpet2446 hypothetical protein YP_002990025.1 TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: gme:Gmet_0279 hypothetical protein YP_002990026.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: gme:Gmet_0280 hypothetical protein YP_002990027.1 TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: gme:Gmet_3312 hypothetical protein YP_002990028.1 TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: gsu:GSU0431 hypothetical protein YP_002990029.1 TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: gme:Gmet_3314 hypothetical protein YP_002990030.1 KEGG: gme:Gmet_3315 ATPase AAA; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: ATPase AAA-2 domain protein; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_002990031.1 TIGRFAM: Rhs element Vgr protein; type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: pin:Ping_0023 rhs element Vgr protein YP_002990032.1 PFAM: pentapeptide repeat protein; KEGG: scl:sce8474 pentapeptide repeat-containing protein YP_002990033.1 PFAM: pentapeptide repeat protein; KEGG: scl:sce6786 hypothetical protein YP_002990034.1 KEGG: scl:sce6787 hypothetical protein YP_002990035.1 KEGG: scl:sce5662 hypothetical protein YP_002990037.1 PFAM: protein of unknown function DUF877; KEGG: bpr:GBP346_A3809 type VI secretion protein, EvpB/family YP_002990038.1 TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; KEGG: gme:Gmet_3310 lipoprotein YP_002990039.1 TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: gme:Gmet_3311 hypothetical protein YP_002990040.1 TIGRFAM: type IV / VI secretion system protein, DotU family; KEGG: gme:Gmet_0273 hypothetical protein YP_002990041.1 KEGG: gme:Gmet_0274 hypothetical protein YP_002990043.1 KEGG: dvm:DvMF_2622 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: radical SAM domain protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein; SMART: Elongator protein 3/MiaB/NifB YP_002990044.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: dvm:DvMF_2621 nitrogenase YP_002990045.1 TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; KEGG: dvm:DvMF_2620 nitrogenase MoFe cofactor biosynthesis protein NifE YP_002990046.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dal:Dalk_1512 GCN5-related N-acetyltransferase YP_002990047.1 KEGG: dvm:DvMF_2619 ferredoxin, 2Fe-2S YP_002990048.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dvm:DvMF_2618 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_002990049.1 KEGG: dvm:DvMF_2617 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_002990050.1 KEGG: dvm:DvMF_2616 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_002990051.1 PFAM: nitrogen regulatory protein P-II; KEGG: dvm:DvMF_2615 nitrogen regulatory protein P-II YP_002990052.1 PFAM: nitrogen regulatory protein P-II; KEGG: dvm:DvMF_2614 nitrogen regulatory protein P-II YP_002990053.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex YP_002990054.1 PFAM: pyruvate carboxyltransferase; KEGG: dvm:DvMF_2612 pyruvate carboxyltransferase YP_002990055.1 KEGG: dat:HRM2_48650 hypothetical protein YP_002990056.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dds:Ddes_0430 transcriptional regulator, AraC family YP_002990057.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport YP_002990058.1 PFAM: major facilitator superfamily MFS_1; KEGG: mxa:MXAN_5357 RhtX/FptX family siderophore transporter YP_002990059.1 KEGG: ppd:Ppro_1940 RND efflux transporter YP_002990060.1 KEGG: ppd:Ppro_1941 hypothetical protein YP_002990061.1 KEGG: ppd:Ppro_1942 hypothetical protein YP_002990062.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ppd:Ppro_1939 MarR family transcriptional regulator YP_002990063.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gur:Gura_1539 CoA-substrate-specific enzyme activase YP_002990064.1 PFAM: methyltransferase type 11; KEGG: ppd:Ppro_1944 methyltransferase type 11 YP_002990065.1 KEGG: ppd:Ppro_1943 hypothetical protein YP_002990066.1 PFAM: ferric-uptake regulator; KEGG: dvm:DvMF_1364 ferric uptake regulator, Fur family YP_002990067.1 KEGG: dde:Dde_0499 hypothetical protein YP_002990068.1 PFAM: protein of unknown function DUF362; KEGG: dal:Dalk_3398 protein of unknown function DUF362 YP_002990069.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: dps:DP1820 multidrug ABC transporter YP_002990070.1 KEGG: dde:Dde_3289 hypothetical protein YP_002990071.1 KEGG: dde:Dde_3288 hypothetical protein YP_002990072.1 PFAM: microcompartments protein; KEGG: dde:Dde_3284 carbon dioxide concentrating mechanism protein (PduA related)-like YP_002990073.1 KEGG: dde:Dde_3283 acetaldehyde dehydrogenase-like YP_002990074.1 PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; KEGG: dde:Dde_3282 formate C-acetyltransferase YP_002990075.1 KEGG: dde:Dde_3281 radical-activating enzyme; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: radical SAM domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002990076.1 PFAM: microcompartments protein; KEGG: dde:Dde_3280 carbon dioxide concentrating mechanism/carboxysome shell protein-like YP_002990077.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: dde:Dde_3279 aldehyde dehydrogenase YP_002990078.1 PFAM: microcompartments protein; KEGG: dde:Dde_3278 microcompartment protein YP_002990079.1 PFAM: Propanediol utilization protein; KEGG: dde:Dde_3276 propanediol utilization protein-like YP_002990080.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: dde:Dde_3275 ethanolamine utilization protein EutJ YP_002990081.1 KEGG: dde:Dde_3274 hypothetical protein YP_002990082.1 PFAM: ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dds:Ddes_1365 ethanolamine utilization protein EutN/carboxysome structural protein CcmL YP_002990083.1 PFAM: microcompartments protein; KEGG: dde:Dde_3272 propanediol utilization protein (PduT)-like YP_002990084.1 KEGG: dde:Dde_3271 hypothetical protein YP_002990085.1 PFAM: microcompartments protein; KEGG: dde:Dde_3278 microcompartment protein YP_002990086.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3267 alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase YP_002990087.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: dde:Dde_3266 electron transfer protein (PduS) YP_002990088.1 PFAM: microcompartments protein; KEGG: dde:Dde_3265 propanediol utilization protein PduT YP_002990089.1 PFAM: microcompartments protein; KEGG: dps:DP1827 propanediol utilization protein (PduU) YP_002990090.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: dde:Dde_3263 ethanolamine utilization protein-like YP_002990091.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: dvm:DvMF_0527 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_002990092.1 PFAM: ExsB family protein; PP-loop domain protein; KEGG: sat:SYN_00475 GMP synthase (glutamine-hydrolyzing) YP_002990093.1 PFAM: protein of unknown function DUF111; KEGG: dvm:DvMF_0528 protein of unknown function DUF111 YP_002990094.1 PFAM: aldo/keto reductase; KEGG: dat:HRM2_04090 aldo/keto reductase YP_002990095.1 PFAM: patatin; KEGG: cti:RALTA_B0685 lipid acyl hydrolase, patatin-like domain YP_002990096.1 KEGG: lip:LI0272 hypothetical protein YP_002990097.1 KEGG: mmw:Mmwyl1_0155 hexapaptide repeat-containing transferase YP_002990098.1 PFAM: protein of unknown function DUF554; KEGG: apl:APL_0733 hypothetical protein YP_002990099.1 KEGG: pfs:PFLU1909 hypothetical protein YP_002990100.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: bmc:BAbS19_II08700 bacterial regulatory protein, Crp family YP_002990101.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: dvl:Dvul_2834 HAD family hydrolase YP_002990102.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_0643 metal dependent phosphohydrolase YP_002990103.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: glo:Glov_0136 multi-sensor signal transduction histidine kinase YP_002990104.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_0539 response regulator receiver protein YP_002990105.1 PFAM: protein of unknown function DUF1498; KEGG: dde:Dde_2521 hypothetical protein YP_002990106.1 PFAM: PfkB domain protein; KEGG: dde:Dde_2522 fructokinase YP_002990107.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3659 sugar ABC transporter permease protein YP_002990108.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3658 glucose ABC transporter permease YP_002990109.1 PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_3657 sugar ABC transporter substrate-binding protein YP_002990110.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: dde:Dde_3656 ATPase YP_002990111.1 PFAM: aldose 1-epimerase; KEGG: cja:CJA_0807 aldose 1-epimerase YP_002990112.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: dde:Dde_3654 LacI family transcription regulator YP_002990113.1 PFAM: GHMP kinase; KEGG: dde:Dde_3653 galactokinase YP_002990114.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P YP_002990115.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 4 type 2; KEGG: dvm:DvMF_1623 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002990116.1 KEGG: dvm:DvMF_1616 hypothetical protein YP_002990117.1 PFAM: flagellar hook capping protein; KEGG: dvl:Dvul_1635 flagellar hook capping protein YP_002990118.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal body FlaE domain protein; KEGG: dvm:DvMF_0246 protein of unknown function DUF1078 domain protein YP_002990119.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: dvm:DvMF_1619 flagellar hook-associated protein FlgK YP_002990120.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL YP_002990121.1 PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: dvm:DvMF_1621 flagellar hook-associated protein 2 domain protein YP_002990122.1 KEGG: dde:Dde_0136 adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase YP_002990123.1 KEGG: dat:HRM2_38620 Aor7; PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; SMART: aldehyde ferredoxin oxidoreductase YP_002990124.1 KEGG: dvu:DVUA0143 Nif-specific regulatory protein; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: GAF domain protein; ATPase AAA YP_002990126.1 KEGG: rso:RSc0102 calcium binding hemolysin protein YP_002990127.1 KEGG: pca:Pcar_2648 acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II YP_002990128.1 KEGG: pca:Pcar_2649 beta-ketoacyl synthase domain-containing protein YP_002990129.1 PFAM: beta-ketoacyl synthase; KEGG: pca:Pcar_2650 3-oxoacyl-(acyl-carrier-protein) synthase YP_002990130.1 KEGG: pca:Pcar_2651 acyl-carrier protein YP_002990131.1 KEGG: pca:Pcar_2652 acyltransferase YP_002990132.1 PFAM: glycosyl transferase family 2; KEGG: pca:Pcar_2653 glycosyltransferase YP_002990133.1 PFAM: radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppd:Ppro_0920 radical SAM domain-containing protein YP_002990134.1 PFAM: thioesterase superfamily protein; KEGG: pca:Pcar_2654 thioesterase YP_002990135.1 PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: pca:Pcar_2655 hypothetical protein YP_002990137.1 KEGG: pca:Pcar_2657 exporter YP_002990138.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: pca:Pcar_2658 hypothetical protein YP_002990139.1 KEGG: pca:Pcar_2659 3-hydroxylacyl-(acyl carrier protein) dehydratase YP_002990140.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_2660 Fe-S oxidoreductase, coenzyme synthesis protein YP_002990141.1 KEGG: efe:EFER_3449 lipoprotein YP_002990142.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: pca:Pcar_2662 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002990143.1 PFAM: phosphopantetheine-binding; KEGG: pca:Pcar_2663 acyl carrier protein YP_002990144.1 PFAM: beta-ketoacyl synthase; KEGG: pca:Pcar_2664 3-oxoacyl-(acyl-carrier-protein) synthase YP_002990145.1 PFAM: FAD dependent oxidoreductase; KEGG: pca:Pcar_2665 phytoene dehydrogenase YP_002990146.1 PFAM: beta-ketoacyl synthase; KEGG: pca:Pcar_2666 3-oxoacyl-(acyl-carrier-protein) synthase I YP_002990147.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pca:Pcar_2667 3-oxoacyl-(acyl-carrier protein) reductase YP_002990149.1 KEGG: msl:Msil_2699 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein YP_002990150.1 KEGG: dvl:Dvul_1570 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_002990151.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dal:Dalk_2344 efflux transporter RND family, MFP subunit YP_002990152.1 PFAM: acriflavin resistance protein; KEGG: dal:Dalk_2343 acriflavin resistance protein YP_002990153.1 PFAM: cupin; KEGG: asu:Asuc_2103 cupin 2 domain-containing protein YP_002990154.1 KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002990155.1 PFAM: aldo/keto reductase; KEGG: bid:Bind_1198 aldo/keto reductase YP_002990156.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dvl:Dvul_0075 LysR family transcriptional regulator YP_002990159.1 PFAM: dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: hch:HCH_00259 dTDP-4-dehydrorhamnose reductase-like protein YP_002990160.1 PFAM: radical SAM domain protein; KEGG: geo:Geob_0664 radical SAM domain protein YP_002990161.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bja:bll7982 hypothetical protein YP_002990163.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: geo:Geob_0661 methyltransferase type 12 YP_002990164.1 PFAM: transketolase; transketolase; KEGG: bja:blr5427 transketolase family protein YP_002990165.1 PFAM: transketolase; KEGG: bja:blr5426 transketolase YP_002990166.1 PFAM: aminoglycoside phosphotransferase; KEGG: bja:blr5425 hypothetical protein YP_002990167.1 KEGG: bja:blr5424 hypothetical protein YP_002990168.1 PFAM: radical SAM domain protein; KEGG: tdn:Suden_0182 radical SAM family protein YP_002990169.1 KEGG: gsu:GSU2086 hypothetical protein YP_002990170.1 TIGRFAM: cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase; KEGG: bja:blr5422 hypothetical protein YP_002990171.1 PFAM: N-acetylneuraminic acid synthase domain; KEGG: pca:Pcar_1140 polysaccharide biosynthesis protein, sialic acid synthase YP_002990172.1 KEGG: pca:Pcar_1794 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; cupin YP_002990173.1 PFAM: glycosyl transferase family 2; KEGG: mxa:MXAN_4616 glycosyl transferase family protein YP_002990174.1 KEGG: hypothetical protein ; K01186 neuraminidase YP_002990175.1 PFAM: glycoside hydrolase family 57; KEGG: gme:Gmet_0448 glycoside hydrolase family protein YP_002990176.1 PFAM: phosphoribosylglycinamide synthetase; KEGG: pca:Pcar_1119 biotin carboxylase YP_002990177.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: shl:Shal_1399 methyltransferase type 11 YP_002990178.1 KEGG: glo:Glov_3381 hypothetical protein YP_002990179.1 PFAM: transketolase; transketolase; KEGG: gsu:GSU2918 transketolase, C-terminal subunit YP_002990180.1 PFAM: transketolase; KEGG: gur:Gura_0491 transketolase domain-containing protein YP_002990181.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: shl:Shal_1401 short-chain dehydrogenase/reductase SDR YP_002990182.1 PFAM: methyltransferase type 11; Methionine biosynthesis MetW protein; methyltransferase type 12; KEGG: sbl:Sbal_2963 methyltransferase type 12 YP_002990183.1 KEGG: gme:Gmet_0454 acylneuraminate cytidylyltransferase YP_002990184.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: dat:HRM2_36850 NeuA YP_002990185.1 KEGG: dvm:DvMF_1841 UDP-N-acetylglucosamine pyrophosphorylase related protein YP_002990186.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: dde:Dde_0439 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_002990187.1 PFAM: transmembrane pair domain protein; KEGG: dps:DP0447 hypothetical protein YP_002990188.1 KEGG: dvm:DvMF_0651 hypothetical protein YP_002990189.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dvl:Dvul_0416 hypothetical protein YP_002990190.1 TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP-binding protein HSR1-related; KEGG: dde:Dde_1698 GTP-dependent nucleic acid-binding protein EngD YP_002990191.1 PFAM: glycosyl transferase family 2; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein YP_002990192.1 KEGG: lch:Lcho_1007 hypothetical protein YP_002990193.1 KEGG: acp:A2cp1_0644 FkbM family methyltransferase YP_002990194.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rle:RL0824 oxidoreductase YP_002990195.1 PFAM: formyl transferase domain protein; KEGG: lhk:LHK_02795 WbcV protein YP_002990196.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rle:RL0822 DegT family aminotransferase YP_002990197.1 KEGG: noc:Noc_2433 hypothetical protein YP_002990198.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: vvy:VV0077 flavoprotein YP_002990199.1 KEGG: vsa:VSAL_I1192 acetyltransferase YP_002990200.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvm:DvMF_2324 PAS/PAC sensor hybrid histidine kinase YP_002990201.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase; KEGG: dde:Dde_3530 hydrogenase YP_002990202.1 KEGG: dde:Dde_1212 hydrogenase YP_002990203.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: dvm:DvMF_0325 methyl-viologen-reducing hydrogenase delta subunit YP_002990204.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dds:Ddes_2101 methyl-viologen-reducing hydrogenase delta subunit YP_002990205.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3526 heterodisulfide reductase, A subunit YP_002990206.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C YP_002990207.1 KEGG: dde:Dde_1207 heterodisulfide reductase, C subunit YP_002990208.1 KEGG: dvl:Dvul_2062 cytochrome c family protein YP_002990209.1 KEGG: dvm:DvMF_2482 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_002990210.1 PFAM: carbamoyltransferase; KEGG: dol:Dole_0978 carbamoyltransferase YP_002990211.1 KEGG: dol:Dole_0977 hypothetical protein YP_002990212.1 KEGG: dol:Dole_0976 membrane protein YP_002990214.1 KEGG: azo:azo1317 hypothetical protein YP_002990215.1 KEGG: dde:Dde_1688 hypothetical protein YP_002990216.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1689 OmpA family protein YP_002990217.1 PFAM: protein of unknown function DUF1063; KEGG: dal:Dalk_4447 protein of unknown function DUF1063 YP_002990218.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: dde:Dde_3466 ADP-glyceromanno-heptose 6-epimerase precursor YP_002990219.1 PFAM: organic solvent tolerance protein; KEGG: dde:Dde_1413 organic solvent tolerance protein YP_002990220.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3464 DNA mismatch repair protein MutL YP_002990221.1 KEGG: dvm:DvMF_1349 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_002990223.1 PFAM: extracellular ligand-binding receptor; KEGG: sfu:Sfum_3105 extracellular ligand-binding receptor YP_002990224.1 PFAM: NADPH-dependent FMN reductase; KEGG: dde:Dde_0441 iron-sulfur flavoprotein YP_002990225.1 PFAM: cobyrinic acid ac-diamide synthase; dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_3202 hypothetical protein YP_002990226.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dvl:Dvul_1123 dinitrogenase iron-molybdenum cofactor biosynthesis YP_002990227.1 KEGG: dde:Dde_3197 hypothetical protein YP_002990228.1 KEGG: dvu:DVU2106 sigma-54 dependent transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; PAS fold-4 domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; PAS domain containing protein YP_002990229.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dvm:DvMF_3165 hydrogenase accessory protein HypB YP_002990230.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: dvm:DvMF_3166 hydrogenase expression/synthesis HypA YP_002990231.1 PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; SMART: CBS domain containing protein; KEGG: dvm:DvMF_2848 CBS domain containing membrane protein YP_002990232.1 PFAM: extracellular solute-binding protein family 3; KEGG: son:SO_1143 hypothetical protein YP_002990233.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dvl:Dvul_2082 TPR repeat-containing protein YP_002990234.1 PFAM: HesB/YadR/YfhF-family protein; KEGG: dvm:DvMF_0158 HesB-like domain-containing protein YP_002990235.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_3127 TetR family transcriptional regulator YP_002990236.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dps:DP1286 sodium/alanine symporter YP_002990237.1 PFAM: TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: dvm:DvMF_1051 TPR repeat-containing protein YP_002990238.1 PFAM: arginase/agmatinase/formiminoglutamase; KEGG: psb:Psyr_2212 arginase/agmatinase/formiminoglutamase YP_002990239.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; heavy metal transport/detoxification protein; haloacid dehalogenase; KEGG: dde:Dde_1313 heavy metal translocating P-type ATPase YP_002990240.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_002990241.1 PFAM: shikimate kinase; KEGG: dvl:Dvul_0723 shikimate kinase YP_002990242.1 KEGG: dde:Dde_2610 hypothetical protein YP_002990243.1 KEGG: dvu:DVU2899 hypothetical protein YP_002990244.1 KEGG: dvl:Dvul_0111 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_002990245.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dvl:Dvul_1736 selenide, water dikinase YP_002990246.1 KEGG: dde:Dde_2450 hypothetical protein YP_002990247.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002990248.1 TIGRFAM: regulatory protein, FmdB family; KEGG: sfu:Sfum_3203 hypothetical protein YP_002990249.1 PFAM: methyltransferase type 11; KEGG: dvl:Dvul_2387 methyltransferase type 11 YP_002990250.1 KEGG: dde:Dde_2444 Lon-A peptidase; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; ATPase AAA YP_002990251.1 PFAM: acylphosphatase; KEGG: dde:Dde_2164 acylphosphatase YP_002990252.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: dvl:Dvul_1864 DNA repair protein RadC YP_002990253.1 PFAM: DNA polymerase III delta; KEGG: dvl:Dvul_1863 DNA polymerase III, delta YP_002990254.1 KEGG: dvm:DvMF_3089 lipoprotein YP_002990255.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: dvm:DvMF_3090 leucyl-tRNA synthetase YP_002990256.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: dde:Dde_2438 transcription antitermination factor NusB YP_002990257.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002990258.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: dvm:DvMF_3093 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002990259.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002990260.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; KEGG: dvl:Dvul_1856 riboflavin biosynthesis protein RibD YP_002990261.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dvl:Dvul_1855 CMP/dCMP deaminase, zinc-binding YP_002990262.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002990263.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: dvm:DvMF_3098 3-oxoacyl-(acyl-carrier-protein) synthase 2 YP_002990264.1 carries the fatty acid chain in fatty acid biosynthesis YP_002990265.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: dvm:DvMF_3100 3-oxoacyl-(acyl-carrier-protein) reductase YP_002990266.1 KEGG: dde:Dde_2428 3-oxoacyl-[acyl-carrier-protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; chalcone and stilbene synthase domain protein YP_002990267.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002990268.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: dvm:DvMF_3103 ribosomal protein L32 YP_002990269.1 PFAM: protein of unknown function DUF177; KEGG: dvl:Dvul_1847 hypothetical protein YP_002990270.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dde:Dde_2425 50S ribosomal protein L28 YP_002990271.1 KEGG: sfr:Sfri_1781 UspA domain protein YP_002990272.1 TIGRFAM: TRAP transporter 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dat:HRM2_16140 TRAP-type transporter 4TM/12TM fusion protein YP_002990273.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: dat:HRM2_16150 TRAP-type transporter periplasmic component (TAXI family protein) YP_002990274.1 PFAM: gamma-glutamyltranspeptidase; KEGG: dde:Dde_1641 gamma-glutamyltransferase 2 YP_002990275.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dvl:Dvul_1683 hypothetical protein YP_002990276.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: dvu:DVU2552 glutamyl-tRNA synthetase YP_002990277.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: dvm:DvMF_0997 nitrogen-fixing NifU domain protein YP_002990278.1 PFAM: Metal-dependent hydrolase HDOD; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_3231 signal transduction protein YP_002990279.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dvm:DvMF_1043 substrate-binding region of ABC-type glycine betaine transport system YP_002990280.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter permease protein YP_002990281.1 KEGG: dde:Dde_0673 glycine betaine/L-proline transport ATP binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter ATPase subunit; PFAM: ABC transporter; CBS domain containing protein; SMART: ATPase AAA; CBS domain containing protein YP_002990282.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dde:Dde_1685 two component Fis family transcriptional regulator YP_002990283.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: dde:Dde_1684 PAS/PAC sensor signal transduction histidine kinase YP_002990284.1 KEGG: dal:Dalk_0467 hypothetical protein YP_002990285.1 KEGG: dvm:DvMF_2147 zinc resistance-associated protein YP_002990286.1 KEGG: dvl:Dvul_0015 zinc resistance-associated protein YP_002990287.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvu:DVU3324 ABC transporter ATP-binding protein YP_002990288.1 PFAM: protein of unknown function DUF214; KEGG: dvm:DvMF_2063 protein of unknown function DUF214 YP_002990289.1 KEGG: gbm:Gbem_1096 hypothetical protein YP_002990290.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_0418 radical SAM family protein YP_002990291.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002990292.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: dvm:DvMF_0952 cell division protein FtsA YP_002990293.1 PFAM: polypeptide-transport-associated domain protein FtsQ-type; KEGG: dvm:DvMF_0953 polypeptide-transport-associated domain protein FtsQ-type YP_002990294.1 KEGG: dvl:Dvul_0743 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_002990295.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002990296.1 KEGG: dvl:Dvul_0741 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyltransferase 28 domain; glycosyl transferase family 28 YP_002990297.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dvl:Dvul_0740 cell division protein FtsW YP_002990298.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dde:Dde_1040 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_002990299.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002990300.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dde:Dde_1038 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_002990301.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dde:Dde_1037 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_002990302.1 PFAM: penicillin-binding protein transpeptidase; PASTA domain containing protein; Penicillin-binding protein dimerisation domain; KEGG: dde:Dde_1036 peptidoglycan glycosyltransferase YP_002990303.1 KEGG: dde:Dde_1035 hypothetical protein YP_002990304.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dvm:DvMF_0963 S-adenosyl-methyltransferase MraW YP_002990305.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: dvl:Dvul_0732 cell division protein MraZ YP_002990306.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvm:DvMF_0966 metal dependent phosphohydrolase YP_002990307.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dvl:Dvul_0728 XRE family transcriptional regulator YP_002990308.1 KEGG: dde:Dde_2605 hypothetical protein YP_002990309.1 PFAM: adenylate cyclase class-I; pentapeptide repeat protein; KEGG: dat:HRM2_23390 CyaA2 YP_002990310.1 KEGG: sfu:Sfum_0289 RNA methyltransferase, TrmA family; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM YP_002990311.1 KEGG: dvm:DvMF_2817 hypothetical protein YP_002990312.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: dde:Dde_0519 rare lipoprotein A YP_002990313.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: dat:HRM2_32730 FsxA YP_002990314.1 PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_2931 protein of unknown function DUF81 YP_002990315.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002990316.1 KEGG: sfu:Sfum_3160 CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type YP_002990317.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dde:Dde_0090 2-hydroxyglutaryl-CoA dehydratase, beta subunit-like YP_002990318.1 KEGG: dal:Dalk_0282 hypothetical protein YP_002990319.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; Penicillin-binding domain protein; penicillin-binding protein transpeptidase; KEGG: mxa:MXAN_2419 penicillin-binding protein 1C YP_002990320.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: nwi:Nwi_1535 extracellular alpha-helical protein YP_002990321.1 KEGG: tbd:Tbd_0888 hypothetical protein YP_002990322.1 KEGG: dal:Dalk_2497 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_002990323.1 PFAM: ApbE family lipoprotein; major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A1216 membrane-associated lipoprotein involved in thiamine biosynthesis YP_002990324.1 PFAM: regulatory protein TetR; KEGG: dvm:DvMF_0336 transcriptional regulator, TetR family YP_002990325.1 PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: dde:Dde_1258 fumarate reductase, cytochrome b subunit YP_002990326.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_002990327.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_002990328.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid YP_002990329.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: dvm:DvMF_2462 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit YP_002990330.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: dde:Dde_1253 malate dehydrogenase YP_002990331.1 TIGRFAM: anion transporter; PFAM: sodium/sulfate symporter; citrate transporter; KEGG: dps:DP0767 Na/dicarboxylate cotransporter YP_002990332.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_002990333.1 PFAM: choloylglycine hydrolase; KEGG: vcj:VCD_000455 hypothetical protein YP_002990334.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_002990335.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: tcx:Tcr_2061 S6 modification enzyme RimK YP_002990336.1 PFAM: protein of unknown function DUF785; KEGG: pca:Pcar_2309 hypothetical protein YP_002990337.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dde:Dde_1789 phosphoadenylylsulfate reductase (thioredoxin) YP_002990338.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: pin:Ping_1283 uracil-DNA glycosylase YP_002990339.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002990340.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002990341.1 KEGG: dvm:DvMF_0122 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_002990342.1 PFAM: peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase YP_002990343.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002990344.1 PFAM: polyprenyl synthetase; KEGG: dde:Dde_2201 farnesyl-diphosphate synthase YP_002990345.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase; transketolase; KEGG: dde:Dde_2200 1-deoxy-D-xylulose-5-phosphate synthase YP_002990346.1 KEGG: mca:MCA0482 hypothetical protein YP_002990347.1 KEGG: dvl:Dvul_1878 hypothetical protein YP_002990348.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase YP_002990350.1 PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; KEGG: dvm:DvMF_2021 response regulator receiver modulated CheW protein YP_002990351.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: asa:ASA_2076 ABC-type amino acid transporter periplasmic binding protein YP_002990353.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: gur:Gura_0007 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_002990354.1 KEGG: dds:Ddes_1297 hypothetical protein YP_002990355.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552 YP_002990356.1 TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein; KEGG: wsu:WS0970 small subunit of cytochrome c nitrite reductase YP_002990357.1 KEGG: lip:LI0907 transcriptional regulators YP_002990358.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: dvm:DvMF_2502 glutamate-1-semialdehyde aminotransferase YP_002990359.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dal:Dalk_0451 cobalamin (vitamin B12) biosynthesis CbiG protein YP_002990360.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dvm:DvMF_2500 precorrin-3B C17-methyltransferase YP_002990361.1 PFAM: cytochrome c class III; KEGG: dde:Dde_3182 cytochrome c3 YP_002990362.1 KEGG: fimbriae-associated protein YP_002990363.1 KEGG: dde:Dde_3184 hypothetical protein YP_002990364.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; KEGG: dde:Dde_3185 demethylmenaquinone methyltransferase YP_002990365.1 KEGG: dvm:DvMF_2495 hypothetical protein YP_002990366.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase ; Ketopantoate reductase ApbA/PanE domain protein; KEGG: dvl:Dvul_0210 UDP-glucose/GDP-mannose dehydrogenase YP_002990367.1 PFAM: purine or other phosphorylase family 1; KEGG: dde:Dde_3188 hypothetical protein YP_002990368.1 PFAM: polyprenyl synthetase; KEGG: dvm:DvMF_2490 polyprenyl synthetase YP_002990369.1 KEGG: dvm:DvMF_2489 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Metal-dependent hydrolase HDOD; SMART: GGDEF domain containing protein; PAS domain containing protein YP_002990370.1 PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: dde:Dde_3191 phosphoribosylformylglycinamidine synthase YP_002990371.1 PFAM: glycosyl transferase group 1; PHP domain protein; KEGG: dde:Dde_3613 glycosyl transferase domain-containing protein YP_002990372.1 KEGG: lpn:lpg0151 hypothetical protein YP_002990374.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: dde:Dde_2473 chaperonin GroEL YP_002990375.1 PFAM: chaperonin Cpn10; KEGG: dvl:Dvul_1195 chaperonin Cpn10 YP_002990376.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: bcj:BCAL1585 histone-like DNA-binding phage protein YP_002990377.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dat:HRM2_00230 NorM YP_002990378.1 PFAM: NHL repeat containing protein; KEGG: gbm:Gbem_2063 NHL repeat containing protein YP_002990379.1 catalyzes the ATP-dependent transport of cobalt YP_002990380.1 KEGG: dvl:Dvul_1570 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_002990382.1 KEGG: dvm:DvMF_1017 hypothetical protein YP_002990383.1 PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; KEGG: ccv:CCV52592_0964 biotin/lipoyl attachment YP_002990385.1 KEGG: dat:HRM2_06280 OadB1; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_002990388.1 PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: dvm:DvMF_0011 serine dehydratase alpha chain YP_002990389.1 PFAM: protein of unknown function DUF523; KEGG: dvl:Dvul_2924 hypothetical protein YP_002990390.1 KEGG: dde:Dde_0524 hypothetical protein YP_002990391.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3467 hypothetical protein YP_002990392.1 KEGG: dvl:Dvul_2532 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region YP_002990393.1 KEGG: dds:Ddes_2294 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein YP_002990394.1 PFAM: dissimilatory sulfite reductase D; KEGG: dvl:Dvul_2530 dissimilatory sulfite reductase B YP_002990395.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0529 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase YP_002990396.1 KEGG: dde:Dde_2681 hypothetical protein YP_002990397.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: dde:Dde_3768 prolipoprotein diacylglyceryl transferase YP_002990398.1 PFAM: hemolysin-type calcium-binding region; KEGG: bja:bll7673 hypothetical protein YP_002990399.1 KEGG: bid:Bind_3695 proprotein convertase P YP_002990400.1 KEGG: glo:Glov_0188 hypothetical protein YP_002990401.1 KEGG: cjd:JJD26997_0965 TraT complement resistance protein YP_002990402.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: cti:RALTA_B0169 periplasmic protease; contains two PDZ domain YP_002990403.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sat:SYN_01576 activator of 2-hydroxyglutaryl-CoA dehydratase YP_002990404.1 PFAM: glutamine cyclotransferase; KEGG: xca:xccb100_1964 hypothetical protein YP_002990405.1 PFAM: TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dde:Dde_2717 TPR repeat-containing protein YP_002990406.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dvm:DvMF_1541 TrkA-N domain protein YP_002990407.1 PFAM: cation transporter; KEGG: dde:Dde_0567 TrkH family potassium uptake protein YP_002990408.1 PFAM: ABC transporter; SMC domain protein; SMART: ATPase AAA; KEGG: gsu:GSU0913 ABC transporter ATP-binding protein YP_002990409.1 PFAM: Hpt domain protein; SMART: Hpt domain protein; KEGG: dps:DP2642 Che family two-component system sensory/regulatory protein YP_002990410.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3667 flavodoxin, short chain YP_002990411.1 PFAM: DAHP synthetase I/KDSA; Chorismate mutase; KEGG: sdn:Sden_0622 DAHP synthetase I/KdsA YP_002990412.1 KEGG: ppr:PBPRA0281 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_002990413.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: dps:DP2948 cystathionine beta-lyase YP_002990414.1 PFAM: glycosyl transferase family 39; KEGG: pat:Patl_3674 glycosyl transferase family protein YP_002990415.1 KEGG: dde:Dde_1679 hypothetical protein YP_002990416.1 PFAM: type IV pilus assembly PilZ YP_002990418.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002990419.1 PFAM: methylenetetrahydrofolate reductase; KEGG: dvm:DvMF_3034 5,10-methylenetetrahydrofolate reductase YP_002990420.1 KEGG: bph:Bphy_5092 hypothetical protein YP_002990421.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_38090 ProW YP_002990422.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dat:HRM2_38080 ProX YP_002990423.1 KEGG: dat:HRM2_38100 ProV; TIGRFAM: glycine betaine/L-proline ABC transporter ATPase subunit; PFAM: ABC transporter; CBS domain containing protein; SMART: ATPase AAA YP_002990424.1 KEGG: dvl:Dvul_0758 hypothetical protein YP_002990425.1 KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like YP_002990426.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dvm:DvMF_2125 DEAD/DEAH box helicase domain protein YP_002990427.1 KEGG: sse:Ssed_3803 hypothetical protein YP_002990428.1 KEGG: bam:Bamb_0907 hypothetical protein YP_002990429.1 KEGG: sfr:Sfri_3230 hypothetical protein YP_002990430.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: vha:VIBHAR_00707 hypothetical protein YP_002990431.1 PFAM: ribonucleotide reductase large subunit; KEGG: maq:Maqu_1085 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_002990432.1 TIGRFAM: citrate synthase I; PFAM: citrate synthase; KEGG: scl:sce8281 hypothetical protein YP_002990433.1 KEGG: dal:Dalk_1816 PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATPase AAA; PAS domain containing protein YP_002990434.1 KEGG: dal:Dalk_1084 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002990435.1 KEGG: dal:Dalk_1085 iron-sulfur cluster-binding protein YP_002990436.1 KEGG: sfu:Sfum_0090 cytochrome c family protein YP_002990437.1 PFAM: cytochrome B561; KEGG: dol:Dole_3004 cytochrome b561 YP_002990438.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: atc:AGR_C_1920 hypothetical protein YP_002990439.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: har:HEAR0032 4-oxalocrotonate tautomerase YP_002990441.1 PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: dde:Dde_3228 molybdopterin binding domain-containing protein YP_002990442.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: dde:Dde_0230 molybdopterin molybdochelatase YP_002990443.1 PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; Fe-S cluster domain protein; KEGG: dde:Dde_0719 molybdopterin-guanine dinucleotide biosynthesis protein-like YP_002990444.1 KEGG: dde:Dde_2015 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_002990445.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: dvm:DvMF_2076 GPR1/FUN34/YaaH family protein YP_002990446.1 PFAM: sodium/hydrogen exchanger; KEGG: tcx:Tcr_0030 sodium/hydrogen exchanger YP_002990447.1 PFAM: sodium/hydrogen exchanger; KEGG: tcx:Tcr_0030 sodium/hydrogen exchanger YP_002990448.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1460 hypothetical protein YP_002990449.1 KEGG: dde:Dde_3498 hypothetical protein YP_002990450.1 PFAM: major facilitator superfamily MFS_1; KEGG: dvm:DvMF_0592 major facilitator superfamily MFS_1 YP_002990451.1 PFAM: ion transporter; KEGG: mca:MCA0647 ion transport family protein YP_002990452.1 KEGG: hypothetical protein YP_002990453.1 KEGG: hypothetical protein YP_002990454.1 KEGG: hypothetical protein YP_002990455.1 KEGG: Zinc finger, C2H2 type family protein YP_002990456.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002990457.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002990458.1 involved in the peptidyltransferase reaction during translation YP_002990459.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: dvl:Dvul_2058 50S ribosomal protein L21 YP_002990460.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; radical SAM domain protein; KEGG: pca:Pcar_2089 methyltransferase YP_002990461.1 KEGG: dvl:Dvul_0541 phosphoribosyltransferase YP_002990462.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: vfm:VFMJ11_A0096 sensor protein LuxQ YP_002990463.1 KEGG: dvm:DvMF_2856 NADPH-dependent FMN reductase YP_002990464.1 PFAM: beta-lactamase domain protein; KEGG: dvl:Dvul_0544 beta-lactamase domain-containing protein YP_002990465.1 PFAM: nitroreductase; KEGG: dvm:DvMF_2852 nitroreductase YP_002990466.1 KEGG: dac:Daci_0065 signal transduction protein YP_002990467.1 KEGG: dde:Dde_2470 hypothetical protein YP_002990468.1 KEGG: sme:SMa2237 hypothetical protein YP_002990469.1 PFAM: SMC domain protein; KEGG: dde:Dde_2596 DNA repair protein RecN YP_002990470.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0778 binding-protein-dependent transport systems inner membrane component YP_002990471.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0779 binding-protein-dependent transport systems inner membrane component YP_002990472.1 PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: dal:Dalk_4418 transcriptional regulator, TetR family YP_002990473.1 PFAM: peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: bra:BRADO2616 hypothetical protein YP_002990474.1 PFAM: protein of unknown function DUF328; KEGG: nis:NIS_0970 hypothetical protein YP_002990475.1 KEGG: glo:Glov_3381 hypothetical protein YP_002990476.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: shl:Shal_1398 methyltransferase type 12 YP_002990477.1 PFAM: radical SAM domain protein; KEGG: geo:Geob_0662 radical SAM domain protein YP_002990478.1 PFAM: radical SAM domain protein; KEGG: tdn:Suden_0182 radical SAM family protein YP_002990479.1 KEGG: lip:LIA019 phosphoheptose isomerase YP_002990480.1 TIGRFAM: cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase; KEGG: bja:blr5422 hypothetical protein YP_002990481.1 KEGG: mch:Mchl_3987 hypothetical protein YP_002990482.1 KEGG: sat:SYN_02890 hypothetical protein YP_002990483.1 KEGG: dol:Dole_2071 hypothetical protein YP_002990484.1 PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer; KEGG: dde:Dde_1279 methyl-accepting chemotaxis sensory transducer YP_002990485.1 PFAM: regulatory protein TetR; KEGG: acp:A2cp1_3063 regulatory protein TetR YP_002990486.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_2896 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002990487.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: glo:Glov_3550 nitrate reductase YP_002990488.1 PFAM: protein of unknown function DUF534; KEGG: mes:Meso_2867 protein of unknown function DUF534 YP_002990489.1 KEGG: dal:Dalk_5017 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002990490.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: gur:Gura_1985 Sel1 domain-containing protein YP_002990492.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: sfu:Sfum_0556 peptidase C14, caspase catalytic subunit P20 YP_002990493.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bba:Bd2321 subtilisin-like serine protease YP_002990494.1 PFAM: glutaredoxin; KEGG: dde:Dde_3766 hypothetical protein YP_002990495.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; KEGG: pol:Bpro_4465 adenylate/guanylate cyclase YP_002990496.1 PFAM: NADPH-dependent FMN reductase; KEGG: dvu:DVU0819 FMN reductase, NADPH-dependent YP_002990497.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dvm:DvMF_1209 methyl-accepting chemotaxis sensory transducer YP_002990498.1 PFAM: glycosyl transferase family 2; KEGG: dvl:Dvul_0909 glycosyl transferase family protein YP_002990499.1 KEGG: dde:Dde_2094 hypothetical protein YP_002990500.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_002990502.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dat:HRM2_32850 PrxU YP_002990503.1 PFAM: sulfate transporter; KEGG: dat:HRM2_13280 SulP1 YP_002990504.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: dat:HRM2_46200 uridylate kinase YP_002990505.1 KEGG: dat:HRM2_46190 hypothetical protein YP_002990506.1 PFAM: transcriptional regulator PadR family protein; KEGG: dat:HRM2_46180 transcriptional regulator YP_002990507.1 KEGG: sfu:Sfum_0275 conserved hypothetical cytosolic protein YP_002990508.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: hch:HCH_02571 amino acid ABC transporter periplasmic protein YP_002990509.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: dps:DP1664 assimilatory sulfite reductase YP_002990510.1 PFAM: helix-turn-helix HxlR type; KEGG: dps:DP0943 hypothetical protein YP_002990511.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: alcohol dehydrogensae YP_002990512.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_002990513.1 PFAM: protein of unknown function DUF1566; KEGG: sse:Ssed_2588 hypothetical protein YP_002990514.1 TIGRFAM: anion transporter; PFAM: sodium/sulfate symporter; KEGG: abu:Abu_2185 sodium:sulfate symporter family protein YP_002990515.1 KEGG: dde:Dde_1279 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_002990516.1 KEGG: glo:Glov_2944 hypothetical protein YP_002990517.1 PFAM: peptidase M48 Ste24p; KEGG: dol:Dole_2972 peptidase M48 Ste24p YP_002990518.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvl:Dvul_2457 ABC transporter YP_002990519.1 PFAM: hypothetical protein; KEGG: dde:Dde_3461 hypothetical protein YP_002990520.1 KEGG: rfr:Rfer_3391 PAS/PAC sensor protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; GAF domain protein; PAS domain containing protein YP_002990521.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dvm:DvMF_3073 methyl-accepting chemotaxis sensory transducer YP_002990522.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: dps:DP0295 hypothetical protein YP_002990523.1 KEGG: dde:Dde_0580 cytochrome c family protein YP_002990524.1 KEGG: dde:Dde_0581 electron transport complex protein RnfC YP_002990525.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: dde:Dde_0582 electron transport complex, RnfABCDGE type, D subunit YP_002990526.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: dde:Dde_0583 electron transport complex, RnfABCDGE type, G subunit YP_002990527.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_002990528.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: dds:Ddes_1242 electron transport complex, RnfABCDGE type, A subunit YP_002990529.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: dal:Dalk_0215 dihydropyrimidine dehydrogenase (NADP(+)) YP_002990530.1 PFAM: ApbE family lipoprotein; KEGG: dde:Dde_0587 hypotehtical protein YP_002990531.1 KEGG: dde:Dde_3022 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_002990532.1 KEGG: sse:Ssed_2229 GGDEF domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; SMART: GGDEF domain containing protein; extracellular solute-binding protein family 3 YP_002990533.1 PFAM: basic membrane lipoprotein; KEGG: rhi:NGR_c35400 basic membrane lipoprotein YP_002990534.1 KEGG: hch:HCH_01316 response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_002990535.1 PFAM: small multidrug resistance protein; KEGG: dvl:Dvul_1177 small multidrug resistance protein YP_002990536.1 KEGG: dde:Dde_2814 methyl-accepting chemotaxis sensory transducer; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; SMART: chemotaxis sensory transducer YP_002990537.1 PFAM: ion transporter ; TrkA-N domain protein; KEGG: dal:Dalk_2078 TrkA-N domain protein YP_002990538.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: glo:Glov_0136 multi-sensor signal transduction histidine kinase YP_002990539.1 KEGG: gbm:Gbem_0112 transmembrane protein YP_002990540.1 PFAM: TonB-dependent receptor plug; KEGG: dat:HRM2_45170 puter membrane receptor YP_002990541.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: yps:YPTB2719 two-component system response regulator YP_002990542.1 PFAM: flagellin domain protein; KEGG: dvl:Dvul_1638 flagellin domain-containing protein YP_002990543.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; regulatory protein LuxR; KEGG: dvm:DvMF_1623 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002990544.1 PFAM: flagellar hook capping protein; KEGG: dvm:DvMF_1617 flagellar hook capping protein YP_002990545.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal body FlaE domain protein; KEGG: dvm:DvMF_1618 protein of unknown function DUF1078 domain protein YP_002990546.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: dvm:DvMF_1619 flagellar hook-associated protein FlgK YP_002990547.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dvm:DvMF_2525 flagellar hook-associated protein 3 YP_002990548.1 PFAM: flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook-associated protein 2 domain protein; KEGG: dvm:DvMF_1621 flagellar hook-associated protein 2 domain protein YP_002990549.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rlt:Rleg2_5582 transcriptional regulator, AraC family YP_002990550.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: abb:ABBFA_003164 protein CsaA YP_002990551.1 KEGG: bba:Bd0901 Zn-dependent hydrolase YP_002990552.1 PFAM: acriflavin resistance protein; KEGG: dol:Dole_1215 acriflavin resistance protein YP_002990553.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dol:Dole_1216 RND family efflux transporter MFP subunit YP_002990554.1 PFAM: regulatory protein TetR; KEGG: dvm:DvMF_2165 transcriptional regulator, TetR family YP_002990555.1 TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_0668 Bcr/CflA subfamily drug resistance transporter YP_002990557.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: dal:Dalk_4016 antibiotic biosynthesis monooxygenase YP_002990558.1 KEGG: avi:Avi_2045 methylated-DNA--protein-cysteinemethyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein YP_002990559.1 PFAM: TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: dat:HRM2_46700 TPR-repeat-containing protein with CheY-like receiver YP_002990560.1 KEGG: dps:DP2880 hypothetical protein YP_002990561.1 KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_002990562.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: dal:Dalk_2348 protein of unknown function DUF523 YP_002990563.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: dde:Dde_0236 hypothetical protein YP_002990564.1 TIGRFAM: deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: ppd:Ppro_2012 deoxyribodipyrimidine photolyase YP_002990565.1 KEGG: dde:Dde_0607 hypothetical protein YP_002990566.1 KEGG: asu:Asuc_1309 hypothetical protein YP_002990567.1 KEGG: scl:sce3322 put. D-ribose-binding periplasmic protein YP_002990568.1 PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; KEGG: sfu:Sfum_0509 peptidase M15D, VanX D-ala-D-ala dipeptidase YP_002990569.1 KEGG: dat:HRM2_08740 MsrAB; TIGRFAM: methionine-R-sulfoxide reductase; peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Methionine sulfoxide reductase A YP_002990570.1 PFAM: glycosyl transferase family 2; KEGG: dvm:DvMF_2150 glycosyl transferase family 2 YP_002990571.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: gsu:GSU0249 hypothetical protein YP_002990572.1 PFAM: isochorismatase hydrolase; KEGG: sfu:Sfum_3430 isochorismatase hydrolase YP_002990573.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: hch:HCH_00844 transcriptional regulator YP_002990574.1 KEGG: abu:Abu_2284 hypothetical protein YP_002990575.1 PFAM: VacJ family lipoprotein; KEGG: dvl:Dvul_0227 VacJ family lipoprotein YP_002990576.1 KEGG: dvl:Dvul_0228 hypothetical protein YP_002990577.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dal:Dalk_4719 transcriptional regulator, MarR family YP_002990578.1 PFAM: methyltransferase type 12; O-methyltransferase family 2; KEGG: scl:sce1219 methyltransferase YP_002990580.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; histidinol-phosphate phosphatase family protein; PFAM: polynucleotide kinase 3 phosphatase central region; KEGG: bid:Bind_1030 histidinol-phosphate phosphatase family protein YP_002990581.1 PFAM: TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_3645 TPR repeat-containing protein YP_002990582.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: dvl:Dvul_0268 carbamoyl phosphate synthase small subunit YP_002990583.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_002990584.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dde:Dde_0367 3-deoxy-D-manno-octulosonic-acid transferase YP_002990585.1 KEGG: dvu:DVU0334 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; protein of unknown function DUF201; phosphoribosylglycinamide synthetase YP_002990586.1 TIGRFAM: metal dependent phophohydrolase; KEGG: dvl:Dvul_2650 metal dependent phosphohydrolase YP_002990588.1 KEGG: dvl:Dvul_0534 DsrC family protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein YP_002990589.1 KEGG: sfu:Sfum_0907 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; PAS fold domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein YP_002990591.1 KEGG: dvm:DvMF_0138 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19 YP_002990593.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: dvm:DvMF_1037 peptidase A24A domain protein YP_002990594.1 KEGG: dde:Dde_3457 phenylacetate-CoA ligase YP_002990595.1 PFAM: periplasmic solute binding protein; KEGG: pen:PSEEN3242 hypothetical protein YP_002990596.1 PFAM: ABC transporter; KEGG: pfs:PFLU2042 ABC transport system, membrane protein YP_002990597.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ppg:PputGB1_2114 ABC transporter YP_002990598.1 PFAM: periplasmic solute binding protein; KEGG: vha:VIBHAR_06745 hypothetical protein YP_002990599.1 KEGG: pen:PSEEN3238 hypothetical protein YP_002990600.1 KEGG: dvl:Dvul_2438 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_002990601.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: dde:Dde_3166 30S ribosomal protein S15 YP_002990602.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: dde:Dde_3165 tRNA pseudouridine synthase B YP_002990603.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein YP_002990604.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: cps:CPS_2204 ribosome-binding factor A YP_002990605.1 PFAM: protein of unknown function DUF503; KEGG: dvl:Dvul_2434 hypothetical protein YP_002990606.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; elongation factor Tu domain 2 protein; KEGG: dde:Dde_3162 translation initiation factor IF-2 YP_002990608.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002990609.1 PFAM: protein of unknown function DUF150; KEGG: dvl:Dvul_2430 hypothetical protein YP_002990612.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: dde:Dde_3159 flagellar basal-body rod protein YP_002990613.1 makes up the distal portion of the flagellar basal body rod YP_002990614.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; KEGG: dvm:DvMF_2519 flagella basal body P-ring formation protein FlgA YP_002990615.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod YP_002990616.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_002990617.1 KEGG: dvu:DVU1169 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_002990618.1 KEGG: dde:Dde_3154 membrane proteins, metalloendopeptidase-like YP_002990619.1 PFAM: FlgN family protein; KEGG: dvm:DvMF_2523 FlgN family protein YP_002990620.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: dvm:DvMF_2524 flagellar hook-associated protein FlgK YP_002990621.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL YP_002990622.1 TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: dde:Dde_3150 carbon storage regulator YP_002990623.1 binds to flagellin and appears to stabilize flagellin during flagella assembly YP_002990624.1 PFAM: anti-sigma-28 factor FlgM family protein; KEGG: dds:Ddes_2005 anti-sigma-28 factor, FlgM YP_002990625.1 KEGG: dde:Dde_0639 hypothetical protein YP_002990626.1 PFAM: ATP-NAD/AcoX kinase; KEGG: dvm:DvMF_0581 ATP-NAD/AcoX kinase YP_002990627.1 KEGG: dde:Dde_2617 hypothetical protein YP_002990628.1 PFAM: MltA domain protein; 3D domain protein; KEGG: dvl:Dvul_2097 MltA domain-containing protein YP_002990629.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB/Yqey domain protein; GatB central domain protein; KEGG: dde:Dde_2615 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_002990630.1 KEGG: dvm:DvMF_2235 translation initiation factor, aIF-2BI family; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_002990633.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002990634.1 PFAM: response regulator receiver; regulatory protein LuxR; sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: dde:Dde_0977 two component LuxR family transcriptional regulator YP_002990635.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: asa:ASA_2363 hypothetical protein YP_002990636.1 KEGG: pat:Patl_3556 hypothetical protein YP_002990637.1 PFAM: sulfatase; KEGG: pat:Patl_0891 sulfatase YP_002990638.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: abu:Abu_2327 methyltransferase YP_002990639.1 PFAM: aminotransferase class I and II; KEGG: plu:plu1412 hypothetical protein YP_002990640.1 PFAM: protein of unknown function DUF107; KEGG: dps:DP1870 hypothetical protein YP_002990641.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: dps:DP1869 hypothetical protein YP_002990642.1 KEGG: dvm:DvMF_3150 hypothetical protein YP_002990643.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_002990644.1 PFAM: colicin V production protein; KEGG: dal:Dalk_3649 colicin V production protein YP_002990645.1 KEGG: dde:Dde_2930 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_002990646.1 KEGG: dvm:DvMF_2690 hypothetical protein YP_002990647.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dvl:Dvul_2269 molybdopterin oxidoreductase YP_002990648.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2688 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002990649.1 PFAM: polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit YP_002990650.1 KEGG: sfu:Sfum_3128 hypothetical protein YP_002990651.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sfu:Sfum_4030 cyclic nucleotide-binding protein YP_002990652.1 KEGG: sfu:Sfum_4032 anti-sigma regulatory factor, serine/threonine protein kinase YP_002990653.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sfu:Sfum_4033 anti-sigma-factor antagonist YP_002990654.1 KEGG: dps:DP2061 hypothetical protein YP_002990656.1 KEGG: sse:Ssed_1051 hypothetical protein YP_002990657.1 PFAM: MscS Mechanosensitive ion channel; KEGG: dvm:DvMF_2529 MscS mechanosensitive ion channel YP_002990658.1 PFAM: shikimate kinase; KEGG: pmr:PMI0371 shikimate kinase YP_002990659.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002990660.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: hap:HAPS_0667 possible SAM-dependent methyltransferase YP_002990661.1 PFAM: radical SAM domain protein; KEGG: dvl:Dvul_2787 radical SAM domain-containing protein YP_002990662.1 PFAM: protein of unknown function DUF77; KEGG: dvm:DvMF_3112 protein of unknown function DUF77 YP_002990663.1 KEGG: dvm:DvMF_0973 lipoprotein YP_002990664.1 PFAM: ApbE family lipoprotein; KEGG: dvm:DvMF_0044 hypothetical protein YP_002990665.1 PFAM: protein of unknown function DUF1121; KEGG: sfu:Sfum_0236 protein of unknown function DUF1121 YP_002990666.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: nam:NAMH_0839 ribosomal protein L34 YP_002990667.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: dvm:DvMF_0890 ribonuclease P protein component YP_002990668.1 PFAM: protein of unknown function DUF37; KEGG: dde:Dde_2395 hypothetical protein YP_002990669.1 PFAM: hypothetical protein; KEGG: dvm:DvMF_0888 hypothetical protein YP_002990670.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: dde:Dde_2393 single-stranded nucleic acid binding R3H YP_002990671.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002990673.1 KEGG: dde:Dde_2624 hypothetical protein YP_002990674.1 PFAM: glycosyl transferase family 2; KEGG: dvu:DVU1892 glycosyl transferase, group 2 family protein YP_002990675.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: dvl:Dvul_2922 TraR/DksA family transcriptional regulator YP_002990676.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: ppr:PBPRB1138 methyltransferase YP_002990677.1 KEGG: sfu:Sfum_3452 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_002990678.1 PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; KEGG: sfu:Sfum_2349 malto-oligosyltrehalose trehalohydrolase YP_002990680.1 KEGG: pca:Pcar_2307 hemolysin YP_002990681.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dvm:DvMF_0572 threonine aldolase YP_002990682.1 PFAM: lipolytic protein G-D-S-L family; KEGG: bid:Bind_1722 GDSL family lipase YP_002990683.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_2734 ABC transporter YP_002990684.1 PFAM: ABC transporter; KEGG: dde:Dde_2210 cation ABC transporter permease protein YP_002990685.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; KEGG: pat:Patl_1194 asparagine synthase (glutamine-hydrolyzing) YP_002990686.1 KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_002990689.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vsp:VS_1290 hypothetical protein YP_002990690.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gsu:GSU1286 chemotaxis protein CheY YP_002990691.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_002990692.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase YP_002990693.1 KEGG: dvm:DvMF_2249 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein YP_002990694.1 PFAM: flagellin domain protein; KEGG: dvm:DvMF_2950 flagellin domain protein YP_002990696.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dvu:DVU0477 isocitrate dehydrogenase, NADP-dependent YP_002990698.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_3628 secretion protein HlyD YP_002990699.1 PFAM: acriflavin resistance protein; KEGG: dde:Dde_2381 acriflavin resistance protein D YP_002990700.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002990701.1 PFAM: glutamine amidotransferase class-I; KEGG: dvl:Dvul_2620 glutamine amidotransferase class-I YP_002990702.1 PFAM: Chorismate binding-like; KEGG: dde:Dde_3618 aminodeoxychorismate synthase, subunit I YP_002990703.1 PFAM: aminotransferase class IV; KEGG: dvm:DvMF_2314 aminotransferase class IV YP_002990704.1 PFAM: type IV pilus assembly PilZ; KEGG: dvl:Dvul_0573 type IV pilus assembly PilZ YP_002990705.1 PFAM: phosphatidylserine decarboxylase-related; KEGG: dal:Dalk_1091 phosphatidylserine decarboxylase-related YP_002990706.1 PFAM: glycosyl transferase family 2; KEGG: dvm:DvMF_2329 glycosyl transferase family 2 YP_002990707.1 PFAM: PP-loop domain protein; KEGG: dde:Dde_3611 hypothetical protein YP_002990708.1 KEGG: dde:Dde_3610 hypothetical protein YP_002990709.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dde:Dde_3609 response regulator receiver domain-containing protein YP_002990710.1 PFAM: peptidase M50; KEGG: dps:DP0062 hypothetical protein YP_002990711.1 KEGG: dvl:Dvul_2825 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_002990712.1 KEGG: dvu:DVU2006 hypothetical protein YP_002990715.1 PFAM: permease; KEGG: dde:Dde_0132 permease YP_002990716.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dde:Dde_0747 ArsR family transcriptional regulator YP_002990717.1 KEGG: bba:Bd0301 hypothetical protein YP_002990718.1 KEGG: gsu:GSU0007 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; histidine kinase HAMP region domain protein YP_002990719.1 PFAM: extracellular ligand-binding receptor; KEGG: dvm:DvMF_0210 extracellular ligand-binding receptor YP_002990720.1 PFAM: GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; KEGG: dal:Dalk_4245 metal dependent phosphohydrolase YP_002990721.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sfu:Sfum_3017 response regulator receiver protein YP_002990723.1 PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0712 lipoprotein YP_002990724.1 KEGG: dde:Dde_0711 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein YP_002990725.1 PFAM: response regulator receiver; Sulfate transporter/antisigma-factor antagonist STAS; SMART: response regulator receiver; KEGG: dvl:Dvul_2371 response regulator receiver protein YP_002990726.1 PFAM: aminodeoxychorismate lyase; KEGG: dde:Dde_0315 aminodeoxychorismate lyase YP_002990727.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dde:Dde_0314 Holliday junction resolvase YqgF YP_002990728.1 PFAM: FAD linked oxidase domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dvm:DvMF_2353 FAD linked oxidase domain protein YP_002990729.1 PFAM: aminotransferase class V; KEGG: glo:Glov_3345 alanine--glyoxylate transaminase YP_002990730.1 KEGG: dde:Dde_0088 hypothetical protein YP_002990731.1 KEGG: sbp:Sbal223_0684 hypothetical protein YP_002990732.1 PFAM: regulatory protein TetR; KEGG: dat:HRM2_40370 HTH-type transcriptional regulator (MtrR family protein) YP_002990733.1 TIGRFAM: sulfate transporter; PFAM: sulfate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_3641 sulfate permease YP_002990734.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dat:HRM2_40350 response regulator receiver domain protein YP_002990735.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dat:HRM2_40340 periplasmic sensor signal transduction histidine kinase YP_002990736.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dat:HRM2_40330 two-component sensory box histidine kinase/response regulator YP_002990737.1 KEGG: dol:Dole_2332 histidine kinase A domain-containing protein YP_002990738.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dat:HRM2_40310 sigma-54 dependent two component transcriptional regulator (fis family protein) YP_002990739.1 PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: dvm:DvMF_1118 methyl-accepting chemotaxis sensory transducer YP_002990740.1 PFAM: ATPase; KEGG: gur:Gura_0746 hypothetical protein YP_002990741.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: dvl:Dvul_0310 (NiFe) hydrogenase maturation protein HypF YP_002990742.1 PFAM: protein of unknown function DUF362; KEGG: dvm:DvMF_1870 protein of unknown function DUF362 YP_002990743.1 KEGG: bbr:BB4378 histone protein YP_002990744.1 PFAM: protein of unknown function DUF81; KEGG: dds:Ddes_0357 protein of unknown function DUF81 YP_002990745.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ade:Adeh_3385 ABC transporter ATPase subunit YP_002990747.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: ilo:IL0573 3'-phosphoadenosine 5'-phosphosulfate (PapS) 3'-phosphatase YP_002990748.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_2459 ThiF protein YP_002990750.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: dde:Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase YP_002990751.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: sse:Ssed_2229 GGDEF domain-containing protein YP_002990752.1 KEGG: dde:Dde_0350 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: ATPase AAA YP_002990753.1 KEGG: dvu:DVU0311 flagellar assembly protein FliH YP_002990754.1 TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: dvm:DvMF_2288 flagellar motor switch protein FliG YP_002990755.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: Flagellar M-ring domain protein; secretory protein YscJ/FliF family protein; KEGG: dvu:DVU0313 flagellar M-ring protein FliF YP_002990756.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: dvl:Dvul_2667 flagellar hook-basal body complex subunit FliE YP_002990757.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: dvl:Dvul_2666 flagellar basal-body rod protein FlgC YP_002990758.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_002990759.1 PFAM: TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dde:Dde_0357 TPR repeat-containing protein YP_002990760.1 PFAM: MGS domain protein; KEGG: dde:Dde_0377 phosphoribosylaminoimidazolecarboxamide formyltransferase YP_002990761.1 TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: dvm:DvMF_1947 GTP-binding protein HflX YP_002990762.1 KEGG: dvm:DvMF_2132 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein YP_002990763.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: dol:Dole_3065 cold-shock DNA-binding domain-containing protein YP_002990764.1 KEGG: dvm:DvMF_2794 hypothetical protein YP_002990765.1 PFAM: CheW domain protein; response regulator receiver; SMART: response regulator receiver; CheW domain protein; KEGG: dde:Dde_3068 CheW protein YP_002990766.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dal:Dalk_3922 response regulator receiver protein YP_002990767.1 PFAM: hydrogenase formation HypD protein; KEGG: dde:Dde_0364 hydrogenase expression/formation protein HypD YP_002990768.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: dde:Dde_0363 hydrogenase expression/formation protein HypE YP_002990769.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: dvm:DvMF_1754 diguanylate phosphodiesterase YP_002990770.1 PFAM: chloride channel core; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_0310 CBS YP_002990771.1 PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; KEGG: dvm:DvMF_2021 response regulator receiver modulated CheW protein YP_002990772.1 PFAM: dihydrouridine synthase DuS; KEGG: dvm:DvMF_2019 dihydrouridine synthase DuS YP_002990773.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: dde:Dde_2989 elongation factor Tu YP_002990774.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002990775.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: dde:Dde_2990 preprotein translocase subunit SecE YP_002990776.1 KEGG: dvm:DvMF_1450 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein YP_002990777.1 KEGG: dvm:DvMF_1451 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11 YP_002990778.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002990779.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002990780.1 TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12; KEGG: dde:Dde_2995 50S ribosomal protein L7/L12 YP_002990781.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002990782.1 KEGG: dde:Dde_2998 DNA-directed RNA polymerase, acetylornithine deacetylase; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein YP_002990783.1 TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: dde:Dde_2263 30S ribosomal protein S12 YP_002990784.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: dvm:DvMF_0076 30S ribosomal protein S7 YP_002990785.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002990786.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002990787.1 PFAM: ribosomal protein L3; KEGG: dvm:DvMF_0079 50S ribosomal protein L3 YP_002990788.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002990789.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002990790.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002990791.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: dde:Dde_2253 SSU ribosomal protein S19P YP_002990792.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: dde:Dde_2252 50S ribosomal protein L22 YP_002990793.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002990794.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002990795.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: dvl:Dvul_1757 50S ribosomal protein L29 YP_002990796.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002990797.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dde:Dde_2247 50S ribosomal protein L14 YP_002990798.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002990799.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002990800.1 PFAM: ribosomal protein S14; KEGG: dds:Ddes_0673 ribosomal protein S14 YP_002990801.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002990802.1 PFAM: ribosomal protein L6; KEGG: dvl:Dvul_1750 50S ribosomal protein L6 YP_002990803.1 binds 5S rRNA along with protein L5 and L25 YP_002990804.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002990805.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002990806.1 late assembly protein YP_002990807.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: dvm:DvMF_0099 preprotein translocase subunit SecY YP_002990808.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dvm:DvMF_0100 methionine aminopeptidase, type I YP_002990809.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002990810.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002990811.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002990812.1 KEGG: dvl:Dvul_1740 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_002990813.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002990814.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: dde:Dde_2230 50S ribosomal protein L17 YP_002990815.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dvm:DvMF_0108 transcriptional regulator, LysR family YP_002990816.1 PFAM: protein of unknown function DUF178; KEGG: dvl:Dvul_0549 hypothetical protein YP_002990817.1 PFAM: radical SAM domain protein; KEGG: dde:Dde_0797 hypothetical protein YP_002990818.1 PFAM: radical SAM domain protein; KEGG: dde:Dde_0798 hypothetical protein YP_002990819.1 PFAM: protein of unknown function DUF191; KEGG: dde:Dde_0799 hypothetical protein YP_002990820.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0301 hypothetical protein YP_002990821.1 KEGG: sfu:Sfum_1055 hypothetical protein YP_002990822.1 PFAM: protein of unknown function DUF615; KEGG: pap:PSPA7_5087 hypothetical protein YP_002990823.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0530 hypothetical protein YP_002990824.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: sfu:Sfum_2781 C_GCAxxG_C_C family protein YP_002990825.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: dat:HRM2_37400 HTH-type transcriptional regulator YP_002990826.1 PFAM: aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: dde:Dde_0054 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase YP_002990827.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: dde:Dde_0218 methyl-accepting chemotaxis sensory transducer YP_002990828.1 PFAM: protein of unknown function DUF140; KEGG: dat:HRM2_49250 ABC-type transporter permease protein YP_002990829.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pca:Pcar_2750 ABC-type transport system, ATPase component YP_002990830.1 PFAM: mammalian cell entry related domain protein; KEGG: dat:HRM2_49270 ABC-type transporter periplasmic substrate-binding protein YP_002990831.1 KEGG: pca:Pcar_2752 hypothetical protein YP_002990832.1 KEGG: dar:Daro_1156 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein YP_002990833.1 KEGG: nam:NAMH_1592 YheB YP_002990834.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dps:DP0368 hypothetical protein YP_002990835.1 KEGG: dps:DP0367 hypothetical protein YP_002990836.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dps:DP0368 hypothetical protein YP_002990837.1 KEGG: GE16687 gene product from transcript GE16687-RA YP_002990838.1 KEGG: sfr:Sfri_3432 hypothetical protein YP_002990840.1 KEGG: dde:Dde_2632 ribulose-5-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_002990841.1 SMART: regulatory protein AsnC/Lrp family; KEGG: dvm:DvMF_2900 transcriptional regulator, AsnC family YP_002990842.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_2128 radical SAM domain-containing protein YP_002990843.1 PFAM: delta-aminolevulinic acid dehydratase; KEGG: dvm:DvMF_2902 delta-aminolevulinic acid dehydratase YP_002990844.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_2126 radical SAM domain-containing protein YP_002990845.1 PFAM: OmpA/MotB domain protein; KEGG: dvm:DvMF_2906 hypothetical protein YP_002990846.1 KEGG: dvm:DvMF_2907 hypothetical protein YP_002990847.1 KEGG: dvl:Dvul_2123 hypothetical protein YP_002990848.1 KEGG: dvm:DvMF_2909 hypothetical protein YP_002990849.1 PFAM: glycosyl transferase group 1; KEGG: dvm:DvMF_2910 glycosyl transferase group 1 YP_002990850.1 TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: dvm:DvMF_2911 flagellar protein FliS YP_002990851.1 PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: dde:Dde_1120 flagellar hook-associated protein 2 YP_002990852.1 PFAM: flagellin domain protein; KEGG: dvm:DvMF_2950 flagellin domain protein YP_002990853.1 PFAM: peptidase M22 glycoprotease; KEGG: dvu:DVU0864 glycoprotease family protein YP_002990854.1 KEGG: dvm:DvMF_2914 membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein YP_002990855.1 KEGG: dde:Dde_1123 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein YP_002990856.1 PFAM: phosphatidate cytidylyltransferase; KEGG: dde:Dde_1125 phosphatidate cytidylyltransferase YP_002990857.1 PFAM: GAF domain protein; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region; KEGG: sfu:Sfum_2177 metal dependent phosphohydrolase YP_002990861.1 PFAM: SH3 type 3 domain protein; KEGG: ajs:Ajs_2152 methyl-accepting chemotaxis sensory transducer YP_002990862.1 KEGG: dvu:DVU0869 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_002990863.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: dvm:DvMF_2919 ribosome recycling factor YP_002990864.1 KEGG: dvm:DvMF_2920 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_002990865.1 TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: dde:Dde_1132 translation elongation factor Ts (EF-Ts) YP_002990866.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2 YP_002990867.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dvl:Dvul_2107 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_002990868.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1137 metallo-beta-lactamase family protein YP_002990869.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: dde:Dde_1136 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002990870.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cps:CPS_4236 hemerythrin family protein YP_002990871.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pca:Pcar_1175 catalase/peroxidase HPI YP_002990872.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002990873.1 PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: sfu:Sfum_1262 hypothetical protein YP_002990874.1 PFAM: radical SAM domain protein; KEGG: dol:Dole_1936 DNA repair photolyase-like protein YP_002990876.1 KEGG: sat:SYN_02429 hypothetical protein YP_002990879.1 KEGG: dvl:Dvul_1879 hypothetical protein YP_002990880.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002990881.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002990882.1 KEGG: dal:Dalk_0127 PAS/PAC sensor protein YP_002990883.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: prw:PsycPRwf_1018 AsnC family transcriptional regulator YP_002990884.1 PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dde:Dde_1279 methyl-accepting chemotaxis sensory transducer YP_002990885.1 KEGG: dal:Dalk_5047 CheW protein YP_002990886.1 KEGG: dvm:DvMF_2851 diguanylate cyclase and serine/threonine protein kinase with TPR repeats; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; Sel1 domain protein repeat-containing protein; hypothetical protein; SMART: GGDEF domain containing protein; Sel1 domain protein repeat-containing protein; hypothetical protein YP_002990887.1 PFAM: lytic transglycosylase catalytic; KEGG: ppd:Ppro_3796 lytic transglycosylase, catalytic YP_002990888.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: pol:Bpro_2458 CheW protein YP_002990889.1 KEGG: dal:Dalk_4669 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; TPR repeat-containing protein; SMART: MCP methyltransferase CheR-type; hypothetical protein YP_002990890.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: gme:Gmet_2708 CheW protein YP_002990891.1 PFAM: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: sat:SYN_00431 chemotaxis protein YP_002990892.1 PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; KEGG: sat:SYN_00430 protein-glutamate methylesterase YP_002990893.1 KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_002990894.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_002990895.1 KEGG: ppf:Pput_0669 hypothetical protein YP_002990896.1 KEGG: dvm:DvMF_2766 hypothetical protein YP_002990897.1 PFAM: TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: dvl:Dvul_0116 TPR repeat-containing protein YP_002990898.1 KEGG: dde:Dde_3773 hypothetical protein YP_002990899.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3774 hypothetical protein YP_002990900.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3775 ferredoxin I YP_002990901.1 PFAM: peptidase M29 aminopeptidase II; KEGG: dal:Dalk_2842 peptidase M29 aminopeptidase II YP_002990902.1 KEGG: gsu:GSU1949 hypothetical protein YP_002990903.1 PFAM: amino acid permease-associated region; KEGG: tau:Tola_2339 amino acid permease-associated region YP_002990904.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpe:KPK_4502 transcriptional regulator, LysR family YP_002990905.1 PFAM: threonyl/alanyl tRNA synthetase SAD; KEGG: dat:HRM2_40520 AlaS2 YP_002990906.1 PFAM: glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bja:bll5912 serine hydroxymethyltransferase YP_002990907.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related YP_002990908.1 PFAM: glycosyl transferase group 1; KEGG: dvu:DVU2635 glycosyl transferase, group 1 family protein YP_002990909.1 KEGG: hch:HCH_00722 hypothetical protein YP_002990910.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002990911.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002990912.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: dde:Dde_1302 heat shock protein DnaJ-like YP_002990913.1 PFAM: protein of unknown function UPF0153; KEGG: dds:Ddes_0986 protein of unknown function UPF0153 YP_002990914.1 PFAM: CoA-binding domain protein; KEGG: dds:Ddes_0987 CoA-binding domain-containing protein YP_002990915.1 PFAM: peptidase M24; KEGG: dvu:DVU1000 M24 family peptidase YP_002990916.1 PFAM: nitroreductase; KEGG: vfm:VFMJ11_A0141 major NAD(p)h-flavin oxidoreductase YP_002990917.1 KEGG: mmw:Mmwyl1_0554 hypothetical protein YP_002990918.1 KEGG: dds:Ddes_1500 FHA domain containing protein YP_002990919.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dvl:Dvul_0480 iron-containing alcohol dehydrogenase YP_002990920.1 KEGG: spe:Spro_3550 kinase YP_002990921.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lch:Lcho_2227 glyoxalase/bleomycin resistance protein/dioxygenase YP_002990922.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dde:Dde_1301 thiol:disulfide interchange protein-like YP_002990923.1 PFAM: protein of unknown function UPF0153; KEGG: scl:sce4748 hypothetical protein YP_002990924.1 PFAM: acyltransferase 3; KEGG: rrj:RrIowa_1497 hypothetical protein YP_002990925.1 PFAM: extracellular solute-binding protein family 1; KEGG: mca:MCA0869 spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein PotD YP_002990926.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component YP_002990927.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3671 polyamine ABC transporter permease protein YP_002990928.1 KEGG: dde:Dde_3670 putrescine/spermidine ABC transporter ATPase protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA YP_002990930.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dol:Dole_1891 GCN5-related N-acetyltransferase YP_002990931.1 KEGG: dvm:DvMF_1509 hypothetical protein YP_002990932.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dvm:DvMF_1510 two component, sigma54 specific, transcriptional regulator, fis family YP_002990933.1 KEGG: dde:Dde_2281 ferredoxin hydrogenase; TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002990934.1 PFAM: iron hydrogenase small subunit; KEGG: dde:Dde_2280 periplasmic (Fe) hydrogenase small subunit precursor YP_002990935.1 KEGG: sat:SYN_02132 transcriptional regulator YP_002990936.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_002990937.1 catalyzes the formation of fumarate from aspartate YP_002990938.1 KEGG: dde:Dde_3553 hypothetical protein YP_002990939.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_2277 biotin synthase YP_002990940.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: dde:Dde_2276 small GTP-binding protein domain-containing protein YP_002990941.1 KEGG: cju:C8J_0036 hypothetical protein YP_002990943.1 KEGG: tau:Tola_2602 hypothetical protein YP_002990944.1 PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: bph:Bphy_0477 TetR family transcriptional regulator YP_002990945.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002990946.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002990947.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: dvl:Dvul_0710 50S ribosomal protein L20 YP_002990948.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: dvm:DvMF_0982 50S ribosomal protein L35 YP_002990949.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_002990950.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; threonyl/alanyl tRNA synthetase SAD; KEGG: dde:Dde_2639 threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase YP_002990951.1 PFAM: sulfatase; KEGG: noc:Noc_0194 arylsulfatase A and related enzyme YP_002990952.1 PFAM: radical SAM domain protein; SEC-C motif domain protein; KEGG: sfu:Sfum_2157 radical SAM domain protein YP_002990953.1 PFAM: acyl-ACP thioesterase; KEGG: bba:Bd2498 hypothetical protein YP_002990954.1 KEGG: gsu:GSU3061 squalene-hopene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: Prenyltransferase/squalene oxidase YP_002990955.1 PFAM: regulatory protein TetR; KEGG: pca:Pcar_0440 TetR/AcrR family transcriptional regulator YP_002990956.1 KEGG: dvm:DvMF_1777 prophage PSPPH06, reverse transcriptase/maturase YP_002990957.1 KEGG: dvm:DvMF_1778 hypothetical protein YP_002990959.1 SMART: extracellular solute-binding protein family 3; KEGG: sse:Ssed_3830 extracellular solute-binding protein YP_002990960.1 TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC; citrate transporter; KEGG: dvl:Dvul_2552 Na+/H+ antiporter NhaC YP_002990961.1 PFAM: sulfatase; KEGG: dvu:DVU0380 sulfatase YP_002990962.1 PFAM: cyclic nucleotide-binding; transcriptional regulator TrmB; SMART: cyclic nucleotide-binding; KEGG: dvl:Dvul_2554 cyclic nucleotide-binding protein YP_002990963.1 PFAM: Thioredoxin domain; KEGG: dvl:Dvul_2555 glutaredoxin YP_002990964.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: dvl:Dvul_2556 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002990965.1 KEGG: dvl:Dvul_2557 hypothetical protein YP_002990966.1 KEGG: dps:DP2951 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE4 domain protein; SMART: GGDEF domain containing protein YP_002990967.1 PFAM: protein of unknown function UPF0126; KEGG: mmw:Mmwyl1_1412 hypothetical protein YP_002990968.1 KEGG: dde:Dde_3718 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002990969.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dvm:DvMF_2591 transcriptional regulator, BadM/Rrf2 family YP_002990970.1 KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein YP_002990971.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_2719 response regulator receiver protein YP_002990972.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dol:Dole_2257 response regulator receiver protein YP_002990973.1 PFAM: UspA domain protein; KEGG: dol:Dole_2256 UspA domain-containing protein YP_002990974.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6 YP_002990975.1 KEGG: dol:Dole_2254 hmc operon protein 5 YP_002990976.1 KEGG: dvm:DvMF_2595 hmc operon protein 4 YP_002990977.1 PFAM: polysulphide reductase NrfD; KEGG: dvl:Dvul_2407 polysulphide reductase, NrfD YP_002990978.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_2251 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_002990979.1 PFAM: cytochrome c class III; KEGG: dvl:Dvul_2405 cytochrome c, class III YP_002990980.1 PFAM: protein of unknown function DUF805; KEGG: ecm:EcSMS35_3402 inner membrane protein YP_002990981.1 PFAM: protein of unknown function DUF195; protein of unknown function DUF1043; KEGG: azo:azo2787 RumC-like protein YP_002990982.1 KEGG: dps:DP1985 deca-heme C-type cytochrome YP_002990983.1 KEGG: rfr:Rfer_4073 cytochrome c family protein YP_002990984.1 KEGG: sun:SUN_0469 hypothetical protein YP_002990985.1 KEGG: sfu:Sfum_3174 hypothetical protein YP_002990986.1 PFAM: cytochrome c class III; KEGG: dol:Dole_2250 cytochrome c class III YP_002990987.1 PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: dde:Dde_2579 GntR family transcriptional regulator YP_002990988.1 KEGG: dps:DP1513 hypothetical protein YP_002990989.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dps:DP1512 DctM (C4-dicarboxylate permease, large subunit) YP_002990990.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dps:DP1511 DctQ (C4-dicarboxylate permease, small subunit) YP_002990991.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dps:DP1510 DctP (periplasmic C4-dicarboxylate binding protein) YP_002990992.1 catalyzes the formation of pyruvate from D-cysteine YP_002990993.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: dat:HRM2_03120 translation initiation inhibitor (YigF-like protein) YP_002990994.1 PFAM: sodium:dicarboxylate symporter; KEGG: dps:DP1506 H+/Na+-glutamate symporter YP_002990995.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: cvi:CV_3309 hypothetical protein YP_002990996.1 PFAM: protein of unknown function DUF1611; KEGG: sil:SPO3607 hypothetical protein YP_002990997.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: sit:TM1040_3167 mandelate racemase/muconate lactonizing-like protein YP_002990998.1 PFAM: aminotransferase class IV; KEGG: rsq:Rsph17025_2484 aminotransferase, class IV YP_002990999.1 KEGG: aha:AHA_1230 ABC-type sugar transport system, ATPase component YP_002991000.1 PFAM: FAD dependent oxidoreductase; HI0933 family protein; KEGG: dde:Dde_2466 hypothetical protein YP_002991001.1 PFAM: NADPH-dependent FMN reductase; KEGG: dal:Dalk_3512 NADPH-dependent FMN reductase YP_002991003.1 PFAM: major facilitator superfamily MFS_1; KEGG: dps:DP2747 membrane transporter YP_002991005.1 KEGG: dvl:Dvul_2560 CoA-binding domain-containing protein YP_002991006.1 KEGG: dvu:DVU1720 hypothetical protein YP_002991007.1 KEGG: ecg:E2348C_2752 predicted endoprotease YP_002991008.1 KEGG: ect:ECIAI39_2677 hypothetical protein from phage origin YP_002991010.1 PFAM: endonuclease I; KEGG: pin:Ping_2580 deoxyribonuclease I YP_002991011.1 KEGG: shm:Shewmr7_3185 hypothetical protein YP_002991012.1 KEGG: shm:Shewmr7_3186 hypothetical protein YP_002991013.1 KEGG: gbm:Gbem_3568 type III restriction protein res subunit; PFAM: EcoEI R domain protein; protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase YP_002991014.1 KEGG: nmn:NMCC_0102 cysteinyl-tRNA synthetase YP_002991015.1 KEGG: psp:PSPPH_4785 ATP-binding protein YP_002991016.1 KEGG: oan:Oant_1849 hypothetical protein YP_002991017.1 PFAM: restriction modification system DNA specificity domain; KEGG: gur:Gura_2097 restriction modification system DNA specificity subunit YP_002991018.1 PFAM: N-6 DNA methylase; KEGG: gbm:Gbem_3570 N-6 DNA methylase YP_002991021.1 KEGG: dde:Dde_0778 hypothetical protein YP_002991022.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: geo:Geob_0597 transcriptional regulator, XRE family YP_002991027.1 KEGG: viral A-type inclusion protein YP_002991028.1 KEGG: dol:Dole_2910 hypothetical protein YP_002991029.1 KEGG: pca:Pcar_0796 hypothetical protein YP_002991031.1 PFAM: Resolvase domain; KEGG: gme:Gmet_3142 resolvase-like protein YP_002991032.1 PFAM: integrase family protein; KEGG: dde:Dde_0620 hypothetical protein YP_002991033.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pmr:PMI2455 plasmid-related glycin-rich membrane protein YP_002991035.1 KEGG: ect:ECIAI39_2677 hypothetical protein from phage origin YP_002991036.1 KEGG: ppr:PBPRB0571 hypothetical protein YP_002991038.1 PFAM: UspA domain protein; KEGG: pca:Pcar_2623 universal stress protein YP_002991039.1 KEGG: tmz:Tmz1t_0612 membrane protein YP_002991040.1 KEGG: dvm:DvMF_1089 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_002991041.1 KEGG: dvm:DvMF_1066 hypothetical protein YP_002991042.1 KEGG: dvm:DvMF_1065 hypothetical protein YP_002991043.1 KEGG: ecv:APECO1_4050 hypothetical protein YP_002991044.1 KEGG: GF19556 gene product from transcript GF19556-RA YP_002991045.1 KEGG: lhk:LHK_01555 hypothetical protein YP_002991047.1 KEGG: dal:Dalk_3866 hypothetical protein YP_002991048.1 PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: gme:Gmet_0842 8-amino-7-oxononanoate synthase YP_002991050.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gme:Gmet_0844 UbiE/COQ5 methyltransferase YP_002991051.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dvm:DvMF_2848 CBS domain containing membrane protein YP_002991053.1 KEGG: fam184a, si:dkey-238k23.1; family with sequence similarity 184, member A YP_002991054.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: dvu:DVU2968 sensor histidine kinase/response regulator YP_002991055.1 PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: metal-dependent phosphohydrolase HD region; response regulator receiver; KEGG: dde:Dde_3114 metal dependent phosphohydrolase YP_002991056.1 PFAM: protein of unknown function DUF205; KEGG: dde:Dde_0172 acyl-phosphate glycerol-3-phosphate acyltransferase YP_002991057.1 PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein YP_002991058.1 KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase; PFAM: AICARFT/IMPCHase bienzyme formylation region; SMART: AICARFT/IMPCHase bienzyme formylation region YP_002991059.1 KEGG: dvm:DvMF_1941 hypothetical protein YP_002991060.1 PFAM: lytic transglycosylase catalytic; KEGG: dde:Dde_0175 transglycosylase SLT domain-containing protein YP_002991061.1 KEGG: dvl:Dvul_0183 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_002991062.1 KEGG: dde:Dde_0177 DNA polymerase III, delta prime subunit YP_002991063.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_0792 acetyltransferase (GNAT) family protein YP_002991064.1 PFAM: peptidase S41; SMART: peptidase S41; KEGG: sdn:Sden_0954 peptidase S41 YP_002991065.1 PFAM: extracellular solute-binding protein family 3; KEGG: dvm:DvMF_0180 hypothetical protein YP_002991066.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: dat:HRM2_12470 LldD YP_002991067.1 PFAM: protein of unknown function DUF81; KEGG: dde:Dde_0751 hypothetical protein YP_002991068.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sfu:Sfum_1522 GntR domain protein YP_002991069.1 PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: sfu:Sfum_2000 fumarate reductase respiratory complex, transmembrane subunit YP_002991070.1 PFAM: peptidase M16 domain protein; KEGG: dvu:DVU1430 M16 family peptidase YP_002991071.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: esa:ESA_03712 hypothetical protein YP_002991072.1 KEGG: dds:Ddes_1704 hypothetical protein YP_002991073.1 KEGG: dvl:Dvul_1570 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_002991074.1 PFAM: aminotransferase class I and II; KEGG: dvm:DvMF_3003 transcriptional regulator, GntR family YP_002991075.1 KEGG: dde:Dde_2814 methyl-accepting chemotaxis sensory transducer; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; SMART: chemotaxis sensory transducer YP_002991076.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo2419 LysR-type transcriptional regulator NahR YP_002991078.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: pfs:PFLU5723 hypothetical protein YP_002991079.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: dde:Dde_3129 phosphate butyryltransferase YP_002991080.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_3130 acetolactate synthase, small subunit YP_002991081.1 KEGG: dvm:DvMF_2963 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS domain containing protein YP_002991082.1 PFAM: transglutaminase; SMART: transglutaminase; KEGG: hypothetical protein YP_002991083.1 KEGG: dds:Ddes_0909 HesB/YadR/YfhF-family protein YP_002991084.1 PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dal:Dalk_4095 transcriptional regulator, AraC family YP_002991085.1 PFAM: cupin; KEGG: dal:Dalk_4094 cupin 2 domain-containing protein YP_002991086.1 PFAM: OsmC family protein; KEGG: dvm:DvMF_3179 OsmC family protein YP_002991087.1 PFAM: protein of unknown function UPF0153; KEGG: dps:DP2528 hypothetical protein YP_002991088.1 PFAM: GtrA family protein; KEGG: azo:azo0751 hypothetical protein YP_002991089.1 KEGG: pmy:Pmen_3647 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; response regulator receiver; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; response regulator receiver; PAS domain containing protein YP_002991090.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: dvm:DvMF_1593 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_002991091.1 KEGG: dvm:DvMF_1594 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_002991092.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dvm:DvMF_1595 NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_002991093.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: dvm:DvMF_1596 NADH dehydrogenase (quinone) YP_002991094.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dvm:DvMF_1597 NADH dehydrogenase (quinone) YP_002991095.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_1598 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002991096.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: dvm:DvMF_1599 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_002991097.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: dvm:DvMF_1600 NADH-ubiquinone oxidoreductase chain 4L YP_002991098.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_002991099.1 KEGG: dvm:DvMF_1602 hypothetical protein YP_002991100.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport YP_002991101.1 KEGG: dvm:DvMF_1604 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_002991102.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dvm:DvMF_1605 NADH dehydrogenase (quinone) YP_002991103.1 KEGG: sbm:Shew185_3374 hypothetical protein YP_002991104.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: dps:DP0143 ferrous iron transport protein B YP_002991105.1 PFAM: FeoA family protein; KEGG: dps:DP0142 ferrous ion transport protein A YP_002991107.1 KEGG: dde:Dde_0523 hypothetical protein YP_002991108.1 PFAM: alpha/beta hydrolase fold; KEGG: vsp:VS_1761 alpha/beta hydrolase fold YP_002991109.1 KEGG: bxe:Bxe_B2245 hypothetical protein YP_002991110.1 KEGG: cti:RALTA_B1096 hypothetical protein; anhydrase/acetyltransferase motif YP_002991111.1 PFAM: Na+/solute symporter; KEGG: dde:Dde_1337 sodium/proline symporter (proline permease) YP_002991112.1 KEGG: dde:Dde_1338 hypothetical protein YP_002991113.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_002991114.1 KEGG: dat:HRM2_03270 PpsA1 YP_002991115.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dat:HRM2_41220 RsbV YP_002991116.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dat:HRM2_04340 predicted anti-sigma factor antagonist RsbV (anti-anti-sigma-B factor) YP_002991117.1 PFAM: acriflavin resistance protein; KEGG: dvm:DvMF_1515 acriflavin resistance protein YP_002991118.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gbm:Gbem_0064 efflux transporter RND family, MFP subunit YP_002991119.1 TIGRFAM: degV family protein; PFAM: DegV family protein; Dak phosphatase; KEGG: dvu:DVU1942 DAK2 and DegV domain-containing protein YP_002991120.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1428 ATPase YP_002991121.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_1429 extracellular solute-binding protein YP_002991122.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0918 polar amino acid ABC transporter inner membrane subunit YP_002991123.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_0919 polar amino acid ABC transporter inner membrane subunit YP_002991124.1 KEGG: mxa:MXAN_5719 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_002991125.1 PFAM: precorrin-8X methylmutase CbiC/CobH; KEGG: dde:Dde_0342 precorrin-8X methylmutase YP_002991126.1 KEGG: dde:Dde_1351 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS domain containing protein YP_002991127.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0602 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002991128.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dvl:Dvul_1223 2-oxoglutarate ferredoxin oxidoreductase subunit alpha YP_002991129.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_002991130.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_1637 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit YP_002991132.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: GAF domain protein; ATPase AAA; KEGG: dde:Dde_1635 Fis family transcriptional regulator YP_002991133.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dvl:Dvul_1218 indolepyruvate ferredoxin oxidoreductase YP_002991134.1 TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dvm:DvMF_0610 indolepyruvate ferredoxin oxidoreductase, alpha subunit YP_002991135.1 KEGG: dvm:DvMF_0611 hypothetical protein YP_002991136.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002991137.1 KEGG: dvl:Dvul_1214 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_002991138.1 PFAM: glycosyl transferase family 9; KEGG: dvu:DVU1956 heptosyltransferase family protein YP_002991139.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: dvm:DvMF_3134 protein of unknown function DUF21 YP_002991140.1 KEGG: dvm:DvMF_3133 cytochrome c-type biogenesis protein CcmE YP_002991141.1 PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1477 cytochrome c-type biogenesis protein CcmF YP_002991142.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvm:DvMF_3131 ABC transporter YP_002991143.1 PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dvm:DvMF_3130 cytochrome c-type biogenesis protein CcmB YP_002991144.1 PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC YP_002991145.1 KEGG: dvm:DvMF_3128 hypothetical protein YP_002991146.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dvm:DvMF_3127 hypothetical protein YP_002991147.1 PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0612 high-affinity branched chain amino acid ABC transporter periplasmic branched chain amino acid-binding protein YP_002991148.1 PFAM: inner-membrane translocator; KEGG: dvm:DvMF_2608 inner-membrane translocator YP_002991149.1 PFAM: inner-membrane translocator; KEGG: dat:HRM2_02770 LivM1 YP_002991150.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvl:Dvul_2394 ABC transporter YP_002991151.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvm:DvMF_2611 ABC transporter YP_002991152.1 KEGG: dvm:DvMF_3126 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein YP_002991153.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002991154.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: gbm:Gbem_3518 twin-arginine translocation protein, TatA/E family subunit YP_002991155.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dde:Dde_1468 sec-independent protein translocase TatC YP_002991156.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dvm:DvMF_3122 imidazoleglycerol-phosphate dehydratase YP_002991157.1 KEGG: dde:Dde_1466 lipoprotein YP_002991158.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002991159.1 PFAM: heavy metal transport/detoxification protein; KEGG: dde:Dde_1312 mercuric transport protein periplasmic component YP_002991160.1 PFAM: aminotransferase class-III; KEGG: dal:Dalk_4472 aminotransferase class-III YP_002991161.1 KEGG: spl:Spea_0811 hypothetical protein YP_002991163.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1 YP_002991164.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002991165.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: dvl:Dvul_2168 glutamyl-tRNA(Gln) amidotransferase, C subunit YP_002991166.1 KEGG: dde:Dde_1022 hypothetical protein YP_002991167.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002991168.1 PFAM: GrpE protein; KEGG: dde:Dde_1025 heat shock protein GrpE YP_002991169.1 KEGG: dol:Dole_2013 peptidase M29 aminopeptidase II YP_002991170.1 PFAM: FeoA family protein; KEGG: pca:Pcar_0883 Fe2+ transport system protein A YP_002991171.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: dde:Dde_2669 ferrous iron transport protein B YP_002991172.1 KEGG: dvm:DvMF_2088 hypothetical protein YP_002991173.1 KEGG: dvm:DvMF_0567 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA YP_002991174.1 KEGG: lip:LI0125 hypothetical protein YP_002991175.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: dvl:Dvul_1288 chaperone DnaJ domain-containing protein YP_002991176.1 PFAM: Rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein YP_002991177.1 KEGG: dde:Dde_1447 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; dephospho-CoA kinase; PFAM: pseudouridine synthase; Dephospho-CoA kinase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_002991178.1 KEGG: dat:HRM2_05330 Upp; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_002991179.1 TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: dat:HRM2_05320 UraA YP_002991180.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dvm:DvMF_2839 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_002991181.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_3580 GCN5-related N-acetyltransferase YP_002991182.1 TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvm:DvMF_1790 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_002991183.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_002991184.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_002991185.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_002991186.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002991187.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psa:PST_2698 acetyltransferase, GNAT family YP_002991188.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dol:Dole_0581 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_002991189.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002991190.1 KEGG: dvm:DvMF_0560 hypothetical protein YP_002991191.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dvm:DvMF_0558 histone family protein DNA-binding protein YP_002991192.1 KEGG: dvm:DvMF_0557 flagellar synthesis regulator FleN YP_002991193.1 KEGG: dvm:DvMF_0556 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002991195.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dvl:Dvul_1303 apolipoprotein N-acyltransferase YP_002991196.1 PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: dde:Dde_1807 CBS YP_002991197.1 KEGG: dde:Dde_1808 hypothetical protein YP_002991198.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002991199.1 catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate YP_002991200.1 KEGG: dde:Dde_1811 hypothetical protein YP_002991201.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dvu:DVU1825 amidohydrolase family protein YP_002991202.1 TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: dol:Dole_2618 methylthioadenosine phosphorylase YP_002991203.1 TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: gme:Gmet_1422 adenine phosphoribosyltransferase YP_002991204.1 KEGG: dvm:DvMF_2464 hypothetical protein YP_002991205.1 PFAM: xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: gbm:Gbem_0540 xanthine/uracil/vitamin C permease YP_002991206.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002991207.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dde:Dde_2058 histone-like DNA-binding protein YP_002991208.1 KEGG: dde:Dde_2057 hypothetical protein YP_002991209.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002991210.1 KEGG: dde:Dde_2055 GatB/YqeY family protein YP_002991211.1 PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; MutS III domain protein; KEGG: dvl:Dvul_1368 Smr protein/MutS2 YP_002991212.1 KEGG: dde:Dde_2053 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein YP_002991213.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: dde:Dde_2052 sigma-70 factor YP_002991214.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: dde:Dde_1529 adenosylcobinamide-phosphate synthase YP_002991215.1 KEGG: cja:CJA_1621 hypothetical protein YP_002991216.1 KEGG: dde:Dde_1440 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding YP_002991217.1 KEGG: dvm:DvMF_3160 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_002991218.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dps:DP3102 ABC transporter ATP-binding protein YP_002991219.1 PFAM: inner-membrane translocator; KEGG: dps:DP3101 hypothetical protein YP_002991220.1 PFAM: protein of unknown function DUF534; KEGG: mes:Meso_2867 protein of unknown function DUF534 YP_002991221.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: dvm:DvMF_3159 protein of unknown function DUF610 YibQ YP_002991222.1 KEGG: dvu:DVU2336 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_002991223.1 PFAM: peptidase M23; KEGG: dvl:Dvul_0922 peptidase M23B YP_002991224.1 PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; KEGG: dvm:DvMF_3156 HhH-GPD family protein YP_002991225.1 PFAM: ribosomal L11 methyltransferase; RNA methylase; KEGG: dde:Dde_1432 50S ribosomal protein L11P methyltransferase YP_002991227.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_002991228.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: dde:Dde_1425 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_002991229.1 KEGG: dvm:DvMF_3147 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_002991230.1 PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: dvu:DVU1787 nuclease domain-containing protein YP_002991231.1 PFAM: ferredoxin-dependent glutamate synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1337 glutamate synthase (NADPH) YP_002991232.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU1238 iron-sulfur cluster-binding protein YP_002991233.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gur:Gura_2492 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002991234.1 PFAM: glutamine amidotransferase class-II; KEGG: dde:Dde_1815 glutamate synthase (NADPH) GltB1 subunit YP_002991235.1 PFAM: glutamate synthase alpha subunit domain protein; KEGG: dvl:Dvul_1339 glutamate synthase alpha subunit YP_002991236.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: dvl:Dvul_1340 preprotein translocase, YajC subunit YP_002991237.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_002991238.1 TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: dde:Dde_1819 preprotein translocase subunit SecF YP_002991239.1 KEGG: bmn:BMA10247_2180 capsular polysaccharide biosynthesis protein YP_002991240.1 PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: dde:Dde_3298 tyrosine-specific transport protein YP_002991241.1 KEGG: vvy:VV1587 permease YP_002991242.1 KEGG: dde:Dde_2460 aldehyde:ferredoxin oxidoreductase, tungsten-containing; PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; SMART: aldehyde ferredoxin oxidoreductase YP_002991243.1 PFAM: UspA domain protein; KEGG: sfu:Sfum_0818 UspA domain protein YP_002991244.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0945 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002991245.1 KEGG: dvu:DVU1363 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase YP_002991246.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: dvm:DvMF_0141 dTDP-glucose 4,6-dehydratase YP_002991247.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1528 RNA methyltransferase YP_002991248.1 PFAM: integrase family protein; KEGG: dol:Dole_2954 integrase family protein YP_002991249.1 KEGG: sfu:Sfum_2425 hypothetical protein YP_002991250.1 KEGG: dvu:DVU2832 transcriptional regulator CII YP_002991252.1 KEGG: bhe:BH11420 hypothetical protein YP_002991253.1 PFAM: NERD domain protein YP_002991255.1 SMART: ATPase AAA; KEGG: pha:PSHAb0321 enzyme with ATPase activity YP_002991257.1 KEGG: tau:Tola_3040 methyltransferase type 12 YP_002991258.1 PFAM: methyltransferase type 11; Tellurite resistance methyltransferase, TehB, core; methyltransferase type 12; KEGG: esa:ESA_03456 hypothetical protein YP_002991259.1 KEGG: rpc:RPC_3926 superfamily I DNA/RNA helicase YP_002991261.1 KEGG: rlt:Rleg2_2430 hypothetical protein YP_002991262.1 PFAM: protein of unknown function DUF45; KEGG: vha:VIBHAR_05618 hypothetical protein YP_002991263.1 KEGG: gur:Gura_4037 HsdR family type I site-specific deoxyribonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase YP_002991264.1 KEGG: sbm:Shew185_3245 hypothetical protein YP_002991265.1 KEGG: geo:Geob_2863 hypothetical protein YP_002991267.1 PFAM: restriction modification system DNA specificity domain; KEGG: pmy:Pmen_0564 restriction modification system DNA specificity subunit YP_002991268.1 PFAM: N-6 DNA methylase; KEGG: gur:Gura_4043 N-6 DNA methylase YP_002991269.1 TIGRFAM: phage regulatory protein, Rha family; KEGG: set:SEN1953 phage immunity protein YP_002991270.1 KEGG: bcs:BCAN_B0374 TraJ protein YP_002991271.1 PFAM: relaxase/mobilization nuclease family protein; KEGG: dps:DPPB43 related to TraI protein (partial length) YP_002991272.1 PFAM: TPR repeat-containing protein; KEGG: hypothetical protein YP_002991274.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: rpb:RPB_4524 phage integrase YP_002991275.1 links inner and outer membrane; KEGG: azc:AZC_1396 hypothetical protein YP_002991276.1 PFAM: outer membrane efflux protein; KEGG: pin:Ping_3184 outer membrane efflux protein YP_002991277.1 KEGG: rme:Rmet_5409 hypothetical protein YP_002991278.1 KEGG: abu:Abu_1031 hypothetical protein YP_002991280.1 PFAM: peptidase M50; KEGG: eca:ECA0803 hypothetical protein YP_002991282.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: avn:Avin_36570 hypothetical protein YP_002991283.1 PFAM: domain of unknown function DUF1738; TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: dps:DPPB22 related to DNA primase TraC YP_002991285.1 PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; KEGG: cjj:CJJ81176_pTet0045 DNA topoisomerase III YP_002991286.1 TIGRFAM: conjugative transfer signal peptidase TraF; KEGG: eba:p2B18 conjugal transfer peptidase TraF YP_002991287.1 KEGG: dvl:Dvul_2955 hypothetical protein YP_002991289.1 PFAM: TRAG family protein; KEGG: ajs:Ajs_4317 conjugal transfer coupling protein TraG YP_002991290.1 PFAM: conjugation TrbI family protein; KEGG: dps:DPPB20 conjugal transfer protein TrbI YP_002991291.1 PFAM: hypothetical protien; KEGG: stt:t1351 bacteriophage tail fiber protein YP_002991292.1 KEGG: pfl:PFL_4682 type IV prepilin PilV YP_002991293.1 KEGG: psb:Psyr_1509 PilM protein YP_002991294.1 KEGG: pol:Bpro_5246 type II secretion system protein E YP_002991296.1 PFAM: PilS domain protein; KEGG: ecg:E2348C_2109 predicted type IV pilin-like protein YP_002991297.1 PFAM: type II secretion system protein; KEGG: bpd:BURPS668_A2253 type IV pilus biogenesis protein YP_002991298.1 PFAM: type II secretion system protein E; KEGG: bcm:Bcenmc03_5912 type II secretion system protein E YP_002991299.1 TIGRFAM: type IV pilus biogenesis protein PilP; KEGG: similar to ENSANGP00000031759 YP_002991300.1 KEGG: rpi:Rpic_5029 hypothetical protein YP_002991301.1 KEGG: pol:Bpro_5240 type II and III secretion system protein YP_002991302.1 KEGG: plu:plu1737 hypothetical protein YP_002991303.1 TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: conjugal transfer protein TrbG/VirB9/CagX; KEGG: dps:DPPB18 conjugal transfer protein TrbG YP_002991304.1 PFAM: conjugal transfer protein; KEGG: dps:DPPB17 conjugal transfer protein TrbF YP_002991305.1 TIGRFAM: P-type conjugative transfer protein TrbL; KEGG: kpe:KPK_1289 P-type conjugative transfer protein TrbL YP_002991306.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: dps:DPPB15 conjugal transfer protein TrbJ YP_002991307.1 PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: dps:DPPB14 conjugal transfer protein TrbE YP_002991308.1 PFAM: conjugal transfer TrbD family protein; KEGG: avi:Avi_9658 conjugal transfer protein YP_002991309.1 PFAM: conjugal transfer protein TrbC; KEGG: dps:DPPB13 conjugal transfer protein TrbC YP_002991310.1 TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: dps:DPPB12 conjugal transfer protein TrbB YP_002991311.1 KEGG: net:Neut_2576 hypothetical protein YP_002991312.1 KEGG: ajs:Ajs_4311 conjugal transfer protein TraL YP_002991314.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: hhe:HH1693 hypothetical protein YP_002991315.1 PFAM: nucleoside recognition domain protein; KEGG: dde:Dde_2184 hypothetical protein YP_002991316.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pca:Pcar_1874 anti-anti-sigma regulatory factor YP_002991317.1 PFAM: histidine kinase dimerisation/phosphoacceptor; response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: ppd:Ppro_3009 hypothetical protein YP_002991318.1 PFAM: type IV pilus assembly PilZ; KEGG: gbm:Gbem_0720 type IV pilus assembly PilZ YP_002991320.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvm:DvMF_1342 ABC transporter YP_002991321.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_2021 polar amino acid ABC transporter inner membrane subunit YP_002991322.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dvl:Dvul_2022 extracellular solute-binding protein YP_002991323.1 KEGG: dde:Dde_1384 hypothetical protein YP_002991324.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dde:Dde_2306 extracellular solute-binding protein YP_002991325.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvl:Dvul_1825 polar amino acid ABC transporter inner membrane subunit YP_002991326.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2308 ATPase YP_002991327.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: dvl:Dvul_2282 histidine kinase YP_002991328.1 PFAM: protein of unknown function UPF0118; KEGG: dde:Dde_2448 hypothetical protein YP_002991329.1 PFAM: 5'-nucleotidase domain protein; KEGG: sun:SUN_0890 5'-nucleotidase YP_002991330.1 PFAM: MltA domain protein; 3D domain protein; KEGG: dde:Dde_2733 transglycosylase YP_002991332.1 TIGRFAM: regulatory protein, FmdB family; KEGG: dvl:Dvul_1274 FmdB family regulatory protein YP_002991333.1 KEGG: viral A-type inclusion protein YP_002991335.1 PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: tcx:Tcr_2062 succinylglutamate desuccinylase/aspartoacylase YP_002991336.1 PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dal:Dalk_0215 dihydropyrimidine dehydrogenase (NADP(+)) YP_002991337.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: dde:Dde_0585 electron transport complex, RnfABCDGE type, A subunit YP_002991338.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_002991339.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: dds:Ddes_1240 FMN-binding domain protein YP_002991340.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: dde:Dde_0582 electron transport complex, RnfABCDGE type, D subunit YP_002991341.1 KEGG: dde:Dde_0581 electron transport complex protein RnfC YP_002991342.1 KEGG: dde:Dde_0580 cytochrome c family protein YP_002991343.1 PFAM: alkaline phosphatase; SMART: alkaline phosphatase; KEGG: dde:Dde_1216 alkaline phosphatase YP_002991344.1 PFAM: YibE/F family protein; KEGG: dde:Dde_1217 multitransmembrane protein-like YP_002991345.1 PFAM: acid phosphatase (class B); KEGG: cbc:CbuK_0531 acid phosphatase YP_002991346.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: sfu:Sfum_0698 thioredoxin-disulfide reductase YP_002991347.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dvl:Dvul_1712 metal dependent phosphohydrolase YP_002991348.1 KEGG: dvl:Dvul_1713 hypothetical protein YP_002991349.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dde:Dde_0774 response regulator receiver domain-containing protein YP_002991350.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: dde:Dde_0773 hypothetical protein YP_002991351.1 PFAM: Hpt domain protein; KEGG: sat:SYN_00227 cytoplasmic protein YP_002991352.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_2450 metal dependent phosphohydrolase YP_002991353.1 KEGG: dde:Dde_2536 hypothetical protein YP_002991354.1 KEGG: dvm:DvMF_3171 hypothetical protein YP_002991355.1 KEGG: dal:Dalk_1050 hypothetical protein YP_002991356.1 KEGG: dal:Dalk_1051 hypothetical protein YP_002991357.1 KEGG: dde:Dde_0728 hypothetical protein YP_002991358.1 KEGG: dal:Dalk_0586 hypothetical protein YP_002991359.1 PFAM: protein of unknown function DUF214; KEGG: dal:Dalk_0585 protein of unknown function DUF214 YP_002991360.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0731 ATPase YP_002991361.1 PFAM: protein of unknown function DUF214; KEGG: dal:Dalk_0583 protein of unknown function DUF214 YP_002991362.1 PFAM: polysaccharide deacetylase; KEGG: dal:Dalk_0582 polysaccharide deacetylase YP_002991363.1 KEGG: dal:Dalk_0581 glycosyltransferase 28 domain protein YP_002991364.1 PFAM: phosphoglycerate mutase; KEGG: dde:Dde_0736 phosphoglycerate mutase (GpmB protein)-like YP_002991365.1 PFAM: glycosyl transferase group 1; KEGG: dal:Dalk_0579 glycosyl transferase group 1 YP_002991366.1 PFAM: glycosyl transferase group 1; KEGG: dal:Dalk_0578 glycosyl transferase group 1 YP_002991367.1 KEGG: dal:Dalk_0577 glycosyltransferase 28 domain protein YP_002991368.1 KEGG: dps:DP0619 hypothetical protein YP_002991369.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: rme:Rmet_5243 methyltransferase type 11 YP_002991370.1 KEGG: eca:ECA3848 acetolactate synthase catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding YP_002991371.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: spe:Spro_0733 acetolactate synthase 1 regulatory subunit YP_002991372.1 KEGG: cja:CJA_3023 hypothetical protein YP_002991373.1 KEGG: sfu:Sfum_2651 hypothetical protein YP_002991374.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvu:DVU2413 radical SAM domain-containing protein YP_002991375.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: dde:Dde_2688 phosphomethylpyrimidine kinase YP_002991379.1 TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pap:PSPA7_4736 sodium/proline symporter PutP YP_002991380.1 PFAM: RNA methylase; KEGG: dde:Dde_1488 hypothetical protein YP_002991381.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sat:SYN_00173 response regulator receiver domain-containing protein YP_002991382.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dvu:DVU1975 methyl-accepting chemotaxis protein YP_002991383.1 PFAM: PhoH family protein; KEGG: dvm:DvMF_0575 PhoH family protein YP_002991384.1 PFAM: protein of unknown function UPF0054; KEGG: dvl:Dvul_1281 hypothetical protein YP_002991385.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: dvm:DvMF_0046 ornithine carbamoyltransferase YP_002991386.1 KEGG: dde:Dde_2531 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase YP_002991387.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002991388.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dar:Daro_1617 hypothetical protein YP_002991389.1 PFAM: acriflavin resistance protein; KEGG: gsu:GSU1332 CzcA family heavy metal efflux protein YP_002991390.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gur:Gura_0088 RND family efflux transporter MFP subunit YP_002991391.1 PFAM: outer membrane efflux protein; KEGG: pca:Pcar_1716 outer membrane protein YP_002991392.1 PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; KEGG: dal:Dalk_1872 protein serine/threonine phosphatase YP_002991393.1 KEGG: hypothetical protein YP_002991394.1 KEGG: dvl:Dvul_1787 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_002991395.1 KEGG: dde:Dde_1514 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_002991396.1 PFAM: protein of unknown function DUF147; KEGG: dvl:Dvul_1785 hypothetical protein YP_002991397.1 PFAM: YbbR family protein; KEGG: dvm:DvMF_0058 YbbR family protein YP_002991398.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002991399.1 PFAM: nucleotidyl transferase; KEGG: dvl:Dvul_1782 UTP-glucose-1-phosphate uridylyltransferase GalU YP_002991401.1 KEGG: dde:Dde_1519 replication restart DNA helicase PriA; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein YP_002991403.1 PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; KEGG: dde:Dde_1441 Smr protein/MutS2-like YP_002991404.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvl:Dvul_1972 ABC transporter YP_002991405.1 PFAM: SufBD protein; KEGG: dvm:DvMF_0915 SufBD protein YP_002991406.1 KEGG: dde:Dde_1443 hypothetical protein YP_002991407.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_2078 CBS YP_002991408.1 KEGG: dvm:DvMF_0412 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_002991409.1 PFAM: protein of unknown function DUF368; KEGG: dol:Dole_2007 hypothetical protein YP_002991410.1 KEGG: dvm:DvMF_0410 Mrp protein YP_002991411.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvm:DvMF_0409 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_002991412.1 KEGG: dvm:DvMF_0408 hypothetical protein YP_002991413.1 PFAM: septum formation initiator; KEGG: dvm:DvMF_0407 septum formation initiator YP_002991414.1 KEGG: dvl:Dvul_1319 hypothetical protein YP_002991415.1 KEGG: dvm:DvMF_0405 hypothetical protein YP_002991416.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_002991417.1 KEGG: dvl:Dvul_1322 metalloendopeptidase glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease YP_002991418.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dde:Dde_2067 thioredoxin YP_002991419.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1324 thioredoxin reductase YP_002991420.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dde:Dde_2065 lipoprotein YP_002991421.1 KEGG: dde:Dde_2064 hypothetical protein YP_002991422.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002991423.1 KEGG: dde:Dde_2062 hypothetical protein YP_002991424.1 PFAM: CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: gme:Gmet_2427 CheA signal transduction histidine kinase YP_002991425.1 KEGG: dde:Dde_2105 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_002991426.1 KEGG: gsu:GSU1145 protein-glutamate methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver YP_002991427.1 PFAM: protein of unknown function DUF190; KEGG: dde:Dde_2103 hypothetical protein YP_002991428.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: dde:Dde_2102 camphor resistance protein CrcB YP_002991429.1 PFAM: adenylate cyclase; KEGG: dde:Dde_2101 adenylate cyclase YP_002991430.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dde:Dde_2100 ATP-dependent Clp protease adaptor protein ClpS YP_002991431.1 KEGG: dde:Dde_2099 ATPase; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; ATPase AAA central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA YP_002991432.1 KEGG: afw:Anae109_0837 leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_002991433.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr3345 glutathione transferase YP_002991434.1 KEGG: dvl:Dvul_1530 hypothetical protein YP_002991435.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002991436.1 PFAM: TrkA-N domain protein; ion transporter ; TrkA-C domain protein; KEGG: dde:Dde_2095 TrkA family potassium uptake protein YP_002991437.1 KEGG: dal:Dalk_0040 DNA ligase (NAD(+)); PFAM: NAD-dependent DNA ligase OB-fold; BRCT domain protein; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase ; BRCT domain protein YP_002991438.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002991439.1 PFAM: metallophosphoesterase; KEGG: msu:MS1630 hypothetical protein YP_002991440.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tcx:Tcr_0945 short-chain dehydrogenase/reductase SDR YP_002991441.1 KEGG: sfu:Sfum_3254 PAS/PAC sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein YP_002991442.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: gur:Gura_0759 two component LuxR family transcriptional regulator YP_002991443.1 PFAM: extracellular solute-binding protein family 3; KEGG: dat:HRM2_27460 ABC-type amino acid transporter periplasmic amino-acid binding protein YP_002991444.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: vpa:VP2167 hypothetical protein YP_002991445.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: glo:Glov_0126 flavin reductase domain protein FMN-binding YP_002991446.1 KEGG: dvm:DvMF_1524 flavin reductase domain protein FMN-binding YP_002991447.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ppd:Ppro_1860 nitroreductase YP_002991448.1 KEGG: cbd:CBUD_1803 hypothetical protein YP_002991449.1 KEGG: hch:HCH_05645 hypothetical protein YP_002991450.1 KEGG: vvu:VV2_1593 deacylase YP_002991453.1 PFAM: TrkA-C domain protein; citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sfr:Sfri_0290 TrkA-C domain protein YP_002991454.1 KEGG: dvl:Dvul_0600 hypothetical protein YP_002991455.1 PFAM: sigma-54 factor interaction domain-containing protein; histidine kinase HAMP region domain protein; SMART: ATPase AAA; KEGG: dde:Dde_0697 response regulator receiver domain-containing protein YP_002991456.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dal:Dalk_2245 histidine kinase YP_002991457.1 KEGG: sfu:Sfum_3176 hypothetical protein YP_002991458.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dal:Dalk_2244 response regulator receiver protein YP_002991459.1 PFAM: response regulator receiver; CBS domain containing protein; SMART: response regulator receiver; KEGG: dat:HRM2_38260 two-component response regulator (CheY-like receiver domain and a winged-helix DNA-binding domain) YP_002991460.1 TIGRFAM: anion transporter; PFAM: sodium/sulfate symporter; citrate transporter; KEGG: dal:Dalk_2243 sodium/sulfate symporter YP_002991461.1 KEGG: dal:Dalk_2242 hypothetical protein YP_002991462.1 KEGG: dal:Dalk_2241 hypothetical protein YP_002991463.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvm:DvMF_1988 response regulator receiver protein YP_002991464.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase YP_002991465.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0617 integral membrane sensor signal transduction histidine kinase YP_002991466.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sfu:Sfum_0618 response regulator receiver protein YP_002991467.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0619 histidine kinase YP_002991468.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sfu:Sfum_0632 response regulator receiver protein YP_002991469.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: dde:Dde_0218 methyl-accepting chemotaxis sensory transducer YP_002991471.1 PFAM: glucose-inhibited division protein A; KEGG: bpt:Bpet0510 hypothetical protein YP_002991472.1 KEGG: dal:Dalk_4359 oxidoreductase FAD/NAD(P)-binding domain protein YP_002991473.1 KEGG: ank:AnaeK_3521 hypothetical protein YP_002991474.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mes:Meso_1864 ABC transporter YP_002991475.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dds:Ddes_0426 binding-protein-dependent transport systems inner membrane component YP_002991476.1 KEGG: dds:Ddes_0427 hypothetical protein YP_002991477.1 PFAM: methyltransferase type 12; methyltransferase type 11; O-methyltransferase family 2; KEGG: dds:Ddes_0428 methyltransferase type 12 YP_002991478.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dds:Ddes_0429 TonB-dependent receptor YP_002991479.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dds:Ddes_0430 transcriptional regulator, AraC family YP_002991482.1 KEGG: dol:Dole_2174 response regulator receiver modulated metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region YP_002991483.1 KEGG: dal:Dalk_2002 hypothetical protein YP_002991484.1 KEGG: dde:Dde_1191 hypothetical protein YP_002991485.1 KEGG: hypothetical protein YP_002991486.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein YP_002991487.1 KEGG: dal:Dalk_0979 hypothetical protein YP_002991488.1 KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: NMT1/THI5 like domain protein; PAS fold-3 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002991489.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002991490.1 KEGG: sfu:Sfum_0324 hypothetical protein YP_002991491.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease YP_002991492.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease YP_002991493.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002991494.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002991495.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002991496.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: dvl:Dvul_1420 cell division FtsK/SpoIIIE YP_002991497.1 KEGG: rpa:RPA2639 L-2-amino-thiazoline-4-carboxylic acid hydrolase YP_002991498.1 TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dvm:DvMF_0370 outer membrane lipoprotein carrier protein LolA YP_002991499.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: dvm:DvMF_0369 pseudouridine synthase YP_002991500.1 PFAM: SirA family protein; KEGG: dvm:DvMF_0368 hypothetical protein YP_002991501.1 PFAM: ABC transporter; ABC transporter transmembrane protein; SMART: ATPase AAA; KEGG: dde:Dde_1960 lipid A export ATP-binding/permease protein MsbA YP_002991502.1 PFAM: protein of unknown function DUF374; KEGG: dde:Dde_1961 hypothetical protein YP_002991503.1 KEGG: dde:Dde_1650 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_002991504.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1151 metal dependent phosphohydrolase YP_002991505.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3069 amino acid ABC transporter permease YP_002991506.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dde:Dde_3070 extracellular solute-binding protein YP_002991507.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dde:Dde_3070 extracellular solute-binding protein YP_002991508.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0088 glutamine ABC transporter permease (GlnP) YP_002991509.1 KEGG: ppd:Ppro_2991 hypothetical protein YP_002991510.1 KEGG: dde:Dde_2342 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_002991511.1 KEGG: dde:Dde_2341 fructose-bisphosphate aldolase; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_002991512.1 KEGG: dde:Dde_2340 exopolyphosphatase / 3'-nucleotidase / 5'-nucleotidase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_002991513.1 KEGG: dvl:Dvul_1091 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; SMART: metal-dependent phosphohydrolase HD region YP_002991514.1 KEGG: dde:Dde_2338 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase YP_002991515.1 KEGG: dde:Dde_2137 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_002991516.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2138 periplasmic (NiFe) hydrogenase, large subunit, isozyme 1 YP_002991517.1 TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2139 hydrogenase expression/formation protein YP_002991518.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dvm:DvMF_0268 hydrogenase assembly chaperone HypC/HupF YP_002991519.1 PFAM: C-type lectin domain protein; SMART: C-type lectin domain protein; KEGG: tgr:Tgr7_2353 hypothetical protein YP_002991520.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; peptidase M42 family protein; KEGG: vfi:VF_A0004 peptidase T-like protein YP_002991521.1 PFAM: protein of unknown function UPF0066; KEGG: dal:Dalk_5286 protein of unknown function UPF0066 YP_002991522.1 PFAM: cytochrome c class III; KEGG: dat:HRM2_47160 cytochrome c, class III family protein YP_002991523.1 KEGG: dat:HRM2_47150 FdhB8 YP_002991524.1 KEGG: dat:HRM2_47140 FdhA8; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase YP_002991525.1 PFAM: methyltransferase type 12; methyltransferase type 11; methyltransferase small; KEGG: dal:Dalk_3686 methyltransferase type 11 YP_002991526.1 KEGG: dde:Dde_2000 transport-associated protein YP_002991527.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: dde:Dde_1996 glycine cleavage system T protein YP_002991528.1 KEGG: dde:Dde_1995 hypothetical protein YP_002991529.1 KEGG: sfu:Sfum_3308 conserved hypothetical cytosolic protein YP_002991530.1 PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein YP_002991531.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: dde:Dde_1993 rod shape-determining protein MreB YP_002991532.1 PFAM: inositol monophosphatase; KEGG: dvu:DVU1680 inositol-1-monophosphatase YP_002991533.1 PFAM: NUDIX hydrolase; KEGG: dvm:DvMF_0346 NUDIX hydrolase YP_002991534.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dvm:DvMF_0347 ribosomal-protein-alanine acetyltransferase YP_002991535.1 PFAM: phosphoglycerate kinase; KEGG: glo:Glov_1617 phosphoglycerate kinase YP_002991536.1 TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: dvm:DvMF_0348 triose-phosphate isomerase YP_002991537.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: dvl:Dvul_1411 preprotein translocase subunit SecG YP_002991538.1 PFAM: protein of unknown function DUF1486; KEGG: cti:RALTA_B0266 hypothetical protein YP_002991539.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sbm:Shew185_2662 GCN5-related N-acetyltransferase YP_002991542.1 KEGG: sbn:Sbal195_1984 hypothetical protein YP_002991543.1 PFAM: DNA alkylation repair enzyme; KEGG: hypothetical protein YP_002991544.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: TrkA-N domain protein; ion transporter ; Hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_3794 TrkA-N domain protein YP_002991546.1 KEGG: swp:swp_3566 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002991547.1 KEGG: sde:Sde_3566 coenzyme A biosynthesis protein YP_002991548.1 KEGG: dvl:Dvul_1428 translaldolase YP_002991549.1 KEGG: dvl:Dvul_1429 TRASH domain-containing protein YP_002991550.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: dvm:DvMF_0362 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_002991551.1 catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis YP_002991552.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dde:Dde_1971 tyrosine recombinase XerD subunit YP_002991553.1 PFAM: polynucleotide adenylyltransferase region; phosphoesterase DHHA1; CBS domain containing protein; phosphoesterase RecJ domain protein; SMART: CBS domain containing protein; KEGG: dde:Dde_1972 CBS YP_002991554.1 PFAM: histidine triad (HIT) protein; KEGG: dvl:Dvul_1434 histidine triad (HIT) protein YP_002991555.1 KEGG: dde:Dde_1974 hypothetical protein YP_002991556.1 SMART: hypothetical protein; KEGG: dvl:Dvul_1436 tetratricopeptide domain-containing protein YP_002991557.1 This protein performs the mismatch recognition step during the DNA repair process YP_002991558.1 KEGG: dvl:Dvul_1438 lipoprotein YP_002991559.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dvm:DvMF_0353 diaminopimelate decarboxylase YP_002991560.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002991561.1 PFAM: ATPase AAA central domain protein; SMART: ATPase AAA; KEGG: dvl:Dvul_1401 recombination factor protein RarA YP_002991562.1 KEGG: dde:Dde_3206 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_002991563.1 PFAM: Metal-dependent hydrolase HDOD; metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1197 signal transduction protein YP_002991564.1 KEGG: dde:Dde_1573 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_002991565.1 KEGG: dvm:DvMF_0300 CgeB family protein YP_002991566.1 PFAM: glycosyl transferase family 9; KEGG: dvu:DVU1464 heptosyltransferase family protein YP_002991567.1 TIGRFAM: siroheme synthase; KEGG: dvm:DvMF_0298 siroheme synthase YP_002991568.1 PFAM: cytochrome c assembly protein; KEGG: dvm:DvMF_0297 cytochrome c assembly protein YP_002991569.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_002991570.1 KEGG: dvl:Dvul_1619 hypothetical protein YP_002991571.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dde:Dde_2027 ketose-bisphosphate aldolase, class-II YP_002991572.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002991573.1 KEGG: dal:Dalk_5167 hexapaptide repeat-containing transferase YP_002991574.1 KEGG: dde:Dde_1832 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region; SMART: CBS domain containing protein YP_002991575.1 KEGG: dvm:DvMF_0524 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_002991576.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002991577.1 TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: dde:Dde_1829 L-aspartate oxidase YP_002991578.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: dde:Dde_2029 K+ transporter trk YP_002991579.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_002991580.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002991581.1 KEGG: dvm:DvMF_0291 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit YP_002991582.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002991583.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: dvl:Dvul_1264 DNA repair protein RecO YP_002991584.1 SMART: helix-turn-helix domain protein; KEGG: dde:Dde_2036 XRE family transcriptional regulator YP_002991585.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dvm:DvMF_0287 SurA domain protein YP_002991586.1 KEGG: dde:Dde_2038 hypothetical protein YP_002991587.1 KEGG: dde:Dde_2039 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_002991588.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: dvl:Dvul_1259 CheW protein YP_002991589.1 KEGG: dvm:DvMF_0283 hypothetical protein YP_002991590.1 KEGG: dvm:DvMF_0282 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_002991591.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_002991592.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_002991593.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: dvm:DvMF_0279 carbohydrate kinase, YjeF related protein YP_002991594.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dvl:Dvul_1253 CBS domain-containing protein YP_002991595.1 PFAM: protein of unknown function UPF0079; KEGG: dde:Dde_2047 hypothetical protein YP_002991596.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_002991597.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; KEGG: dde:Dde_2049 alpha-isopropylmalate/homocitrate synthase family transferase YP_002991598.1 PFAM: beta-lactamase domain protein; KEGG: gbm:Gbem_3848 beta-lactamase domain protein YP_002991599.1 PFAM: glycoside hydrolase family 57; KEGG: dvl:Dvul_0769 glycoside hydrolase family protein YP_002991601.1 KEGG: dvl:Dvul_2011 hypothetical protein YP_002991603.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002991604.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: lip:LI1052 lipoprotein signal peptidase YP_002991605.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: dal:Dalk_1768 prolipoprotein diacylglyceryl transferase YP_002991606.1 KEGG: dat:HRM2_03960 hypothetical protein YP_002991607.1 TIGRFAM: tol-pal system protein YbgF; KEGG: dde:Dde_2145 TPR domain-containing protein YP_002991608.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2146 iron-sulfur cluster-binding protein YP_002991609.1 KEGG: dde:Dde_2147 hypothetical protein YP_002991610.1 KEGG: dvm:DvMF_0261 chemotaxis phosphatase, CheZ YP_002991611.1 PFAM: TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: hypothetical protein YP_002991612.1 PFAM: Na+/H+ antiporter NhaC; KEGG: dvu:DVU1978 Na+/H+ antiporter family protein YP_002991613.1 KEGG: dvm:DvMF_2756 phosphoribosylglycinamide formyltransferase 2; TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_002991614.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: dvm:DvMF_2128 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002991615.1 PFAM: beta-lactamase domain protein; KEGG: dde:Dde_0151 metallo-beta-lactamase family protein YP_002991616.1 KEGG: lip:LI0701 nuclease subunit of the excinuclease complex; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; helix-hairpin-helix motif; UvrB/UvrC protein; SMART: excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1 YP_002991617.1 KEGG: dvu:DVU0799 hypothetical protein YP_002991618.1 KEGG: dvm:DvMF_2846 hypothetical protein YP_002991619.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002991620.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002991621.1 KEGG: dvm:DvMF_2816 short-chain dehydrogenase/reductase SDR YP_002991622.1 TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: dds:Ddes_2024 ribosomal protein S6 YP_002991623.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002991624.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002991625.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: dde:Dde_1409 primary replicative DNA helicase YP_002991626.1 KEGG: dvm:DvMF_1153 phenylacetate--CoA ligase YP_002991627.1 PFAM: protein of unknown function DUF456; KEGG: dde:Dde_0973 hypothetical protein YP_002991628.1 TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dde:Dde_0171 L-threonine synthase YP_002991629.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dde:Dde_2981 hemolysin A YP_002991630.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dvl:Dvul_1804 membrane protein involved in aromatic hydrocarbon degradation YP_002991631.1 KEGG: dvm:DvMF_2628 hypothetical protein YP_002991632.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: pca:Pcar_1807 UDP-glucose 4-epimerase YP_002991633.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: smd:Smed_4709 methyltransferase type 11 YP_002991634.1 PFAM: DSBA oxidoreductase; KEGG: dvl:Dvul_2927 DsbA oxidoreductase YP_002991635.1 KEGG: neu:NE0096 hypothetical protein YP_002991636.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase YP_002991637.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dvm:DvMF_0418 biotin/acetyl-CoA-carboxylase ligase YP_002991638.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: bxe:Bxe_C1377 cyclic nucleotide-binding protein YP_002991639.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: bpy:Bphyt_4598 cyclic nucleotide-binding protein YP_002991640.1 PFAM: hypothetical protein; KEGG: dal:Dalk_3002 hypothetical protein YP_002991641.1 PFAM: polynucleotide adenylyltransferase region; KEGG: dvl:Dvul_1326 polynucleotide adenylyltransferase region YP_002991642.1 KEGG: dvm:DvMF_2776 hypothetical protein YP_002991643.1 KEGG: dvu:DVU1034 hypothetical protein YP_002991644.1 PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: dde:Dde_2334 succinyl-CoA synthetase (ADP-forming) alpha subunit / succinyl-CoA synthetase (ADP-forming) beta subunit YP_002991645.1 PFAM: glycosyl transferase group 1; KEGG: dvl:Dvul_0195 glycosyl transferase, group 1 YP_002991646.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_1046 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002991647.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dvm:DvMF_0272 hydrogenase maturation protease YP_002991648.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing YP_002991649.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dvl:Dvul_1249 hydrogenase (NiFe) small subunit HydA YP_002991650.1 PFAM: peptidase M23; KEGG: dvl:Dvul_1311 peptidase M23B YP_002991651.1 PFAM: YibE/F family protein; KEGG: dat:HRM2_01870 uncharacterized conserved multi-transmembrane protein YP_002991652.1 PFAM: alkaline phosphatase; SMART: alkaline phosphatase; KEGG: dat:HRM2_01880 PhoA YP_002991653.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ppd:Ppro_2081 ABC transporter YP_002991654.1 PFAM: ABC transporter permease; ABC transporter; KEGG: sfu:Sfum_0494 ABC transporter permease YP_002991655.1 PFAM: periplasmic binding protein; KEGG: ccv:CCV52592_1559 iron chelatin ABC transporter substrate binding protein YP_002991657.1 PFAM: beta-lactamase; KEGG: dal:Dalk_1093 serine-type D-Ala-D-Ala carboxypeptidase YP_002991658.1 KEGG: dvl:Dvul_1732 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; ATPase AAA YP_002991659.1 KEGG: dvl:Dvul_0316 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein YP_002991660.1 binds and unfolds substrates as part of the ClpXP protease YP_002991661.1 KEGG: nam:NAMH_1731 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_002991662.1 TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2222 trigger factor YP_002991663.1 KEGG: dvm:DvMF_1816 TPR repeat-containing protein YP_002991664.1 PFAM: Bile acid:sodium symporter; KEGG: glo:Glov_2603 bile acid:sodium symporter YP_002991665.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: dde:Dde_2644 Crp/FNR family transcriptional regulator YP_002991666.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: kpe:KPK_4501 translocator protein, LysE family YP_002991667.1 PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: csa:Csal_2719 transcriptional regulator, AraC family YP_002991669.1 KEGG: sbp:Sbal223_1287 hypothetical protein YP_002991670.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dvm:DvMF_1118 methyl-accepting chemotaxis sensory transducer YP_002991671.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: hch:HCH_06116 membrane-fusion protein YP_002991672.1 KEGG: hch:HCH_06117 bacteriocin/lantibiotic ABC transporter; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; peptidase C39 bacteriocin processing; ABC transporter transmembrane protein; SMART: ATPase AAA YP_002991673.1 KEGG: swp:swp_1383 hemolysin-type calcium-binding region YP_002991674.1 KEGG: rpe:RPE_0004 hypothetical protein YP_002991675.1 KEGG: swp:swp_1383 hemolysin-type calcium-binding region YP_002991676.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mmw:Mmwyl1_2823 HlyD family type I secretion membrane fusion protein YP_002991677.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cbd:CBUD_2136 type I protein secretion ATP-binding protein YP_002991678.1 PFAM: ABC transporter transmembrane protein; KEGG: cbd:CBUD_2135 multidrug resistance ABC transporter ATP-binding and permease protein YP_002991679.1 KEGG: hypothetical protein YP_002991680.1 KEGG: dde:Dde_2152 hypothetical protein YP_002991681.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2153 transport protein TolQ-like YP_002991682.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2154 biopolymer transport protein (ExbB)-like YP_002991683.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_2155 biopolymer transport protein (ExbD2) YP_002991684.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dde:Dde_2156 TonB-like YP_002991685.1 SMART: hypothetical protein; KEGG: dde:Dde_2157 TPR repeat-containing protein YP_002991686.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dds:Ddes_0430 transcriptional regulator, AraC family YP_002991687.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: glo:Glov_3527 two component, sigma54 specific, transcriptional regulator, Fis family YP_002991688.1 KEGG: gur:Gura_2172 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_002991689.1 PFAM: protein of unknown function DUF336; KEGG: mxa:MXAN_2113 hypothetical protein YP_002991690.1 KEGG: pca:Pcar_1397 glycerol dehydratase; TIGRFAM: pyruvate formate-lyase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical YP_002991691.1 KEGG: pca:Pcar_1396 glycerol dehydratase activating enzyme; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: radical SAM domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002991692.1 KEGG: tgr:Tgr7_1864 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_002991693.1 PFAM: DoxX family protein; KEGG: sfu:Sfum_3388 DoxX family protein YP_002991694.1 PFAM: rhodanese domain protein; SMART: rhodanese domain protein; KEGG: pca:Pcar_2523 rhodanese-related sulfurtransferase YP_002991695.1 PFAM: cupin; KEGG: ppd:Ppro_1386 cupin 2 domain-containing protein YP_002991696.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: aha:AHA_1311 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002991697.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer; KEGG: dvl:Dvul_2947 methyl-accepting chemotaxis sensory transducer YP_002991698.1 KEGG: dvm:DvMF_2966 hypothetical protein YP_002991701.1 KEGG: pin:Ping_0239 hypothetical protein YP_002991702.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: dde:Dde_2000 transport-associated protein YP_002991703.1 KEGG: MORN repeat variant family protein YP_002991704.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: glo:Glov_1080 peptidase C14 caspase catalytic subunit P20 YP_002991705.1 KEGG: shn:Shewana3_2489 hypothetical protein YP_002991707.1 KEGG: hypothetical protein YP_002991710.1 PFAM: late control D family protein; KEGG: xfa:XF2479 hypothetical protein YP_002991711.1 PFAM: tail X family protein; KEGG: efe:EFER_2682 tail protein X YP_002991712.1 PFAM: P2 GpU family protein; KEGG: avn:Avin_37350 phage P2 GpU protein YP_002991713.1 KEGG: sit:TM1040_1281 hypothetical protein YP_002991714.1 KEGG: bgl:bglu_1g27130 hypothetical protein YP_002991715.1 TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: sit:TM1040_1283 phage major tail tube protein YP_002991716.1 PFAM: tail sheath protein; KEGG: sit:TM1040_1284 phage tail sheath protein YP_002991718.1 KEGG: geo:Geob_1583 hypothetical protein YP_002991719.1 TIGRFAM: phage tail protein I; KEGG: ecm:EcSMS35_4340 phage tail protein GpI YP_002991720.1 PFAM: Baseplate J family protein; KEGG: xfa:XF2488 phage-related baseplate assembly protein YP_002991721.1 PFAM: GPW/gp25 family protein; KEGG: wri:WRi_007090 baseplate assembly protein W YP_002991722.1 TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: wri:WRi_012540 baseplate assembly protein V YP_002991723.1 KEGG: sit:TM1040_1295 hypothetical protein YP_002991724.1 KEGG: xfn:XfasM23_1167 hypothetical protein YP_002991728.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: dal:Dalk_3563 N-acetylmuramoyl-L-alanine amidase family 2 YP_002991729.1 KEGG: efe:EFER_2692 hypothetical protein YP_002991730.1 KEGG: pna:Pnap_0961 peptidase S14, ClpP YP_002991731.1 TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: nmc:NMC0857 phage related protein YP_002991733.1 KEGG: cyclic nucleotide-binding domain containing protein YP_002991736.1 KEGG: hypothetical protein YP_002991738.1 KEGG: bpa:BPP1254 hypothetical protein YP_002991741.1 PFAM: terminase GpA; KEGG: dvu:DVU0194 terminase, large subunit YP_002991742.1 KEGG: dvu:DVU2186 hypothetical protein YP_002991744.1 TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: dvu:DVU2188 primase YP_002991745.1 KEGG: vvu:VV1_0079 bacteriophage phi GP55-like protein YP_002991748.1 SMART: helix-turn-helix domain protein; KEGG: dvu:DVU1519 transcriptional regulator YP_002991750.1 PFAM: protein of unknown function DUF450; KEGG: dvu:DVU2837 hypothetical protein YP_002991753.1 PFAM: integrase family protein; KEGG: sat:SYN_00484 integrase YP_002991754.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: dvl:Dvul_0072 dihydroorotate dehydrogenase family protein YP_002991755.1 PFAM: oxidoreductase; KEGG: dde:Dde_0057 dihydroorotate oxidase B, electron transfer subunit YP_002991756.1 PFAM: peptidase U32; KEGG: dvm:DvMF_2141 peptidase U32 YP_002991757.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: met:M446_3008 XRE family transcriptional regulator YP_002991758.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dat:HRM2_38830 DctP8 YP_002991759.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mmw:Mmwyl1_2292 tripartite ATP-independent periplasmic transporter DctQ YP_002991760.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dat:HRM2_38840 DctM8 YP_002991761.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_002991762.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002991763.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002991764.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_3298 methyl-accepting chemotaxis sensory transducer YP_002991765.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: dde:Dde_3124 penicillin-binding protein 1A YP_002991766.1 KEGG: dvm:DvMF_2631 hypothetical protein YP_002991767.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: dvl:Dvul_2807 amidophosphoribosyltransferase YP_002991768.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; RimK domain protein ATP-grasp; MGS domain protein; carbamoyl-phosphate synthetase large chain oligomerisation; carbamoyl-phosphate synthetase large chain domain protein; KEGG: dde:Dde_0333 carbamoyl-phosphate synthase large subunit YP_002991769.1 PFAM: FeoA family protein; KEGG: dat:HRM2_10920 Fur YP_002991771.1 PFAM: SlyX family protein; KEGG: tau:Tola_2133 SlyX family protein YP_002991772.1 KEGG: lip:LI0272 hypothetical protein YP_002991773.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002991774.1 PFAM: PSP1 domain protein; KEGG: dvm:DvMF_0760 PSP1 domain protein YP_002991775.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dde:Dde_1694 response regulator receiver domain-containing protein YP_002991776.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: dde:Dde_0547 ComEC/Rec2-related protein YP_002991777.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002991778.1 TIGRFAM: sulfate transporter; PFAM: sulfate transporter; Sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; KEGG: dvl:Dvul_2701 sulfate transporter YP_002991779.1 KEGG: sme:SMc00938 hypothetical protein YP_002991780.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: dvl:Dvul_2607 CopG family transcriptional regulator YP_002991781.1 PFAM: plasmid stabilization system; KEGG: eca:ECA2758 hypothetical protein YP_002991782.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein; KEGG: dvl:Dvul_2441 selenocysteine-specific translation elongation factor YP_002991783.1 catalyzes the removal of amino acids from the N termini of peptides YP_002991784.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_002991785.1 KEGG: dvm:DvMF_1310 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein YP_002991786.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: sfu:Sfum_2442 two component, sigma54 specific, transcriptional regulator, fis family YP_002991787.1 KEGG: sfu:Sfum_2443 histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002991788.1 KEGG: dol:Dole_1354 hypothetical protein YP_002991789.1 PFAM: protein of unknown function DUF81; KEGG: dat:HRM2_38150 hypothetical protein YP_002991790.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_0173 response regulator receiver protein YP_002991791.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dal:Dalk_2251 response regulator receiver protein YP_002991792.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dal:Dalk_2250 response regulator receiver protein YP_002991793.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1356 histidine kinase YP_002991794.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dol:Dole_1357 response regulator receiver protein YP_002991795.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase YP_002991797.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; redoxin; KEGG: pat:Patl_0274 redoxin YP_002991798.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dde:Dde_2791 arsenical-resistance protein YP_002991799.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: gur:Gura_0468 regulatory protein, ArsR YP_002991800.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dde:Dde_2782 hypothetical protein YP_002991801.1 PFAM: Thioredoxin domain; KEGG: dol:Dole_2886 thioredoxin domain-containing protein YP_002991802.1 TIGRFAM: redox-active disulfide protein 2; PFAM: glutaredoxin 2; KEGG: dde:Dde_2778 redox-active disulfide protein 2 YP_002991803.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_002991804.1 KEGG: rec:RHECIAT_CH0003757 hypothetical protein YP_002991805.1 PFAM: outer membrane efflux protein; KEGG: bac:BamMC406_6073 TolC family type I secretion outer membrane protein YP_002991806.1 KEGG: rso:RS05070 hemagglutinin/hemolysin-related protein YP_002991807.1 KEGG: maq:Maqu_0322 OmpA/MotB domain-containing protein YP_002991808.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: lpc:LPC_0935 toxin secretion ATP binding protein YP_002991809.1 PFAM: secretion protein HlyD family protein; KEGG: cco:CCC13826_0892 acriflavine resistance protein YP_002991810.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1421 PAS/PAC sensor protein YP_002991811.1 KEGG: dat:HRM2_03280 hypothetical protein (transmembrane family protein) YP_002991812.1 PFAM: MscS Mechanosensitive ion channel; KEGG: tgr:Tgr7_1533 MscS mechanosensitive ion channel YP_002991813.1 PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; KEGG: dde:Dde_0161 LytR/AlgR family transcriptional regulator YP_002991814.1 PFAM: histidine kinase internal region; GAF domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; ATP-binding region ATPase domain protein; KEGG: dde:Dde_0160 ATP-binding region, ATPase-like YP_002991817.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: dat:HRM2_38400 NADPH-dependent FMN reductase, iron-sulfur flavoprotein YP_002991818.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: maq:Maqu_2657 filamentation induced by cAMP protein Fic YP_002991819.1 PFAM: carbon starvation protein CstA; KEGG: dps:DP1277 carbon starvation protein A YP_002991820.1 KEGG: met:M446_1150 hypothetical protein YP_002991821.1 KEGG: mpo:Mpop_4431 hypothetical protein YP_002991822.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: glo:Glov_1080 peptidase C14 caspase catalytic subunit P20 YP_002991824.1 KEGG: sat:SYN_02895 TPR repeat-containing protein YP_002991825.1 PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: pca:Pcar_2997 F0F1-type ATP synthase, gamma subunit YP_002991826.1 KEGG: pca:Pcar_2996 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_002991827.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: pna:Pnap_2330 H+-transporting two-sector ATPase, B/B' subunit YP_002991828.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_002991829.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002991830.1 KEGG: pca:Pcar_2992 hypothetical protein YP_002991831.1 TIGRFAM: F0F1-ATPase subunit; KEGG: pna:Pnap_2334 F0F1-ATPase subunit YP_002991832.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: pca:Pcar_2990 F0F1 ATP synthase subunit epsilon YP_002991833.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002991834.1 KEGG: dal:Dalk_1894 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_002991835.1 KEGG: dde:Dde_2446 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; SMART: DEAD-like helicase ; helicase domain protein; HRDC domain protein YP_002991836.1 KEGG: dde:Dde_2584 hypothetical protein YP_002991837.1 KEGG: hch:HCH_00651 Rossmann fold nucleotide-binding protein YP_002991839.1 PFAM: cyclase family protein; KEGG: ara:Arad_8216 cyclase YP_002991840.1 KEGG: dps:DP0690 hypothetical protein YP_002991841.1 KEGG: rso:RSc2731 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase YP_002991842.1 PFAM: thiamineS protein; KEGG: dal:Dalk_1984 thiamineS protein YP_002991843.1 PFAM: DHHA2 domain protein; phosphoesterase RecJ domain protein; KEGG: dde:Dde_1778 manganese-dependent inorganic pyrophosphatase YP_002991844.1 KEGG: dvl:Dvul_1499 hypothetical protein YP_002991845.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: dde:Dde_1776 PTS system, IIB component YP_002991846.1 PFAM: PTS system fructose subfamily IIA component; KEGG: dvl:Dvul_1501 PTS system fructose subfamily IIA component YP_002991847.1 PFAM: hypothetical protein; KEGG: dvm:DvMF_0424 hypothetical protein YP_002991848.1 TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dde:Dde_1773 PTS IIA-like nitrogen-regulatory protein PtsN YP_002991849.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dde:Dde_1772 SSU ribosomal protein S30P / sigma 54 modulation protein YP_002991850.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: dvl:Dvul_1505 RNA polymerase, sigma 54 subunit, RpoN YP_002991851.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1770 ATPase YP_002991852.1 TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; SH3 type 3 domain protein; KEGG: dvl:Dvul_1507 OstA family protein YP_002991853.1 PFAM: protein of unknown function DUF1239; KEGG: dvu:DVU1626 hypothetical protein YP_002991854.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dde:Dde_1767 phosphatase KdsC YP_002991855.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_002991856.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002991857.1 KEGG: dde:Dde_1764 phosphoribosylformylglycinamidine synthase I YP_002991858.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dvm:DvMF_0169 CMP/dCMP deaminase zinc-binding YP_002991860.1 KEGG: predicted gene, 621884 YP_002991861.1 PFAM: phosphatidylserine decarboxylase-related; KEGG: sun:SUN_0887 hypothetical protein YP_002991862.1 PFAM: type III restriction protein res subunit; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dal:Dalk_3293 type III restriction protein res subunit YP_002991865.1 PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pha:PSHAa0573 transcriptional regulator YP_002991866.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dps:DP1868 NADH-dependent alcohol dehydrogenase YP_002991867.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: rhodanese domain protein; KEGG: ppd:Ppro_1974 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002991868.1 KEGG: dal:Dalk_0127 PAS/PAC sensor protein YP_002991869.1 PFAM: ferredoxin thioredoxin reductase beta chain; KEGG: ferredoxin thioredoxin reductase catalytic beta chain family protein YP_002991870.1 PFAM: haloacid dehalogenase; KEGG: dat:HRM2_46780 haloacid dehalogenase-like family protein YP_002991871.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dde:Dde_3472 MarR family transcriptional regulator YP_002991872.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pca:Pcar_0165 hypothetical protein YP_002991873.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bba:Bd2916 transcriptional regulator YP_002991874.1 KEGG: psb:Psyr_1296 hypothetical protein YP_002991875.1 PFAM: protein of unknown function DUF1696; KEGG: swd:Swoo_0950 hypothetical protein YP_002991876.1 PFAM: carboxylyase-related protein; KEGG: dvu:DVU2320 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein YP_002991877.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: cvi:CV_1638 amino acid ABC transporter YP_002991878.1 KEGG: ade:Adeh_3546 hypothetical protein YP_002991880.1 PFAM: ThiJ/PfpI domain protein; KEGG: afr:AFE_0523 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme YP_002991881.1 PFAM: calcium-binding EF-hand-containing protein; KEGG: dps:DP1789 hypothetical protein YP_002991882.1 PFAM: ABC transporter; SMC domain protein; SMART: ATPase AAA; KEGG: dat:HRM2_23010 GlnQ5 YP_002991883.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_23000 GlnP6 YP_002991884.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dat:HRM2_22990 GlnH3 YP_002991885.1 PFAM: glutamine synthetase catalytic region; KEGG: dde:Dde_0102 glutamine synthetase, type III YP_002991886.1 KEGG: hch:HCH_04531 hypothetical protein YP_002991887.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer YP_002991888.1 PFAM: protein of unknown function DUF903; KEGG: pmy:Pmen_1742 hypothetical protein YP_002991889.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1487 glycosyl transferase, group 2 family protein YP_002991890.1 KEGG: dde:Dde_1715 CgeB family protein YP_002991891.1 PFAM: chloramphenicol acetyltransferase; KEGG: dvl:Dvul_1087 chloramphenicol acetyltransferase YP_002991892.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: dvm:DvMF_2126 excinuclease ABC C subunit domain protein YP_002991893.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvu:DVU3052 ABC transporter ATP-binding protein YP_002991894.1 PFAM: NUDIX hydrolase; KEGG: dvm:DvMF_2380 NUDIX hydrolase YP_002991895.1 PFAM: methylenetetrahydrofolate reductase; KEGG: dvm:DvMF_3034 5,10-methylenetetrahydrofolate reductase YP_002991896.1 KEGG: dvl:Dvul_0328 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding YP_002991897.1 PFAM: aminotransferase class IV; KEGG: dde:Dde_0255 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase YP_002991898.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3107 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase YP_002991899.1 PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter periplasmic iron compount-binding protein YP_002991900.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_3105 ATPase YP_002991901.1 PFAM: ABC transporter permease; KEGG: dde:Dde_3104 iron compound ABC transporter permease protein YP_002991902.1 PFAM: anaerobic cobalt chelatase; KEGG: dal:Dalk_0440 anaerobic cobalt chelatase YP_002991903.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2162 MATE efflux family protein YP_002991904.1 KEGG: dde:Dde_1422 tRNA (uracil-5-)-methyltransferase Gid; TIGRFAM: gid protein; PFAM: glucose-inhibited division protein A YP_002991905.1 KEGG: dde:Dde_1182 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002991906.1 KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002991907.1 PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: dde:Dde_3111 L-serine ammonia-lyase YP_002991908.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: dat:HRM2_45230 protein-tyrosine-phosphatase YP_002991909.1 KEGG: aha:AHA_1230 ABC-type sugar transport system, ATPase component YP_002991910.1 PFAM: UspA domain protein; KEGG: dat:HRM2_06350 UspA10 YP_002991911.1 KEGG: dat:HRM2_06360 hypothetical protein YP_002991912.1 PFAM: GTPase EngC; KEGG: dde:Dde_3170 ribosome-associated GTPase YP_002991913.1 KEGG: tau:Tola_0951 hypothetical protein YP_002991914.1 PFAM: domain of unknown function DUF1731; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: dvl:Dvul_0435 hypothetical protein YP_002991915.1 KEGG: dde:Dde_2950 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; PAS fold domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; histidine kinase A domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_002991916.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator YP_002991917.1 PFAM: UspA domain protein; KEGG: dvm:DvMF_1409 UspA domain protein YP_002991918.1 KEGG: dal:Dalk_3027 hypothetical protein YP_002991919.1 PFAM: peptidase S24 and S26 domain protein; KEGG: dvl:Dvul_0458 prophage repressor YP_002991920.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dvu:DVU2906 UmuC protein YP_002991921.1 PFAM: TPR repeat-containing protein; SMART: hypothetical protein; KEGG: SLEI family protein YP_002991922.1 PFAM: carbamoyl-phosphate synthetase large chain domain protein; carbamoyl-phosphate synthase L chain ATP-binding; KEGG: dds:Ddes_0460 pyruvate carboxylase YP_002991923.1 PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: dvl:Dvul_1016 acetyl-CoA carboxylase YP_002991924.1 KEGG: hypothetical protein YP_002991926.1 PFAM: regulatory protein LysR; KEGG: sfu:Sfum_0033 transcriptional regulator, ModE family YP_002991927.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2651 MATE efflux family protein YP_002991928.1 KEGG: dvm:DvMF_0998 hypothetical protein YP_002991929.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein YP_002991930.1 PFAM: UvrD/REP helicase; KEGG: dvu:DVU0156 ATP-dependent DNA helicase UvrD YP_002991931.1 KEGG: dvu:DVU0157 thiamin-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_002991932.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: dvm:DvMF_2247 channel protein, hemolysin III family YP_002991933.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002991934.1 PFAM: Na+/H+ antiporter NhaC; KEGG: dps:DP1702 hypothetical protein YP_002991935.1 PFAM: regulatory protein TetR; KEGG: dal:Dalk_0754 transcriptional regulator, TetR family YP_002991936.1 PFAM: secretion protein HlyD family protein; KEGG: rso:RSc0163 lipoprotein YP_002991937.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rme:Rmet_0349 ABC transporter-related protein YP_002991938.1 PFAM: ABC transporter; KEGG: dde:Dde_0698 transmembrane protein YP_002991939.1 KEGG: dps:DP0156 hypothetical protein YP_002991940.1 KEGG: dps:DP0157 hypothetical protein YP_002991941.1 KEGG: slo:Shew_1030 hypothetical protein YP_002991942.1 KEGG: dvm:DvMF_1072 hypothetical protein YP_002991945.1 KEGG: dvl:Dvul_0645 hypothetical protein YP_002991946.1 KEGG: dvm:DvMF_1107 hypothetical protein YP_002991947.1 TIGRFAM: phage uncharacterized protein; KEGG: dvl:Dvul_0639 hypothetical protein YP_002991951.1 KEGG: dal:Dalk_3982 hypothetical protein YP_002991953.1 KEGG: glo:Glov_1970 hypothetical protein YP_002991954.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dde:Dde_2814 methyl-accepting chemotaxis sensory transducer YP_002991955.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: scl:sce5062 hypothetical protein YP_002991956.1 KEGG: dde:Dde_0703 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_002991957.1 TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; NmrA family protein; KEGG: noc:Noc_0999 NAD-dependent epimerase/dehydratase YP_002991960.1 KEGG: avn:Avin_08970 non-hypothetical protein YP_002991961.1 PFAM: carbon starvation protein CstA; KEGG: dat:HRM2_21730 CstA YP_002991962.1 PFAM: beta-lactamase domain protein; KEGG: dvl:Dvul_0948 beta-lactamase domain-containing protein YP_002991963.1 PFAM: YCII-related; KEGG: mpt:Mpe_A2445 hypothetical protein YP_002991964.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gur:Gura_2534 MarR family transcriptional regulator YP_002991965.1 PFAM: protein of unknown function DUF169; KEGG: dde:Dde_0597 hypothetical protein YP_002991966.1 PFAM: protein of unknown function DUF81; KEGG: dde:Dde_0598 hypothetical protein YP_002991967.1 KEGG: dde:Dde_0600 hypothetical protein YP_002991968.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: dde:Dde_0601 phosphonate-binding periplasmic protein YP_002991969.1 KEGG: dvm:DvMF_2189 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002991970.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: dde:Dde_0604 pyruvate,water dikinase YP_002991971.1 PFAM: TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: gme:Gmet_2032 TPR repeat-containing protein YP_002991972.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: dol:Dole_0035 SpoIID/LytB domain-containing protein YP_002991973.1 KEGG: sat:SYN_02891 fibronectin type III domain-containing protein YP_002991975.1 PFAM: protein of unknown function DUF400; KEGG: glo:Glov_1265 hypothetical protein YP_002991976.1 SMART: hypothetical protein; KEGG: glo:Glov_1264 S-layer domain protein YP_002991977.1 KEGG: glo:Glov_1253 hypothetical protein YP_002991978.1 KEGG: mrd:Mrad2831_3034 hypothetical protein YP_002991979.1 KEGG: dvu:DVU1743 hypothetical protein YP_002991980.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_002991981.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mca:MCA1686 anti-sigma B factor antagonist YP_002991982.1 PFAM: YCII-related; KEGG: dps:DP2485 hypothetical protein YP_002991983.1 PFAM: EAL domain protein; phosphotransferase system EIIC; SMART: EAL domain protein; KEGG: dvm:DvMF_0208 EAL domain protein YP_002991984.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gsu:GSU0402 hemerythrin family protein YP_002991985.1 PFAM: GAF domain protein; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region; KEGG: azo:azo0631 HD-domain-containing protein YP_002991986.1 KEGG: sun:SUN_1027 hypothetical protein YP_002991987.1 involved in regulation of intracellular pH under alkaline conditions YP_002991988.1 PFAM: protein of unknown function UPF0066; KEGG: ppd:Ppro_2195 hypothetical protein YP_002991989.1 KEGG: dde:Dde_3614 translation initiation factor 1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein YP_002991990.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1 YP_002991991.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002991992.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002991993.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: dvl:Dvul_1692 acetolactate synthase, large subunit, biosynthetic type YP_002991994.1 KEGG: dvl:Dvul_1693 hypothetical protein YP_002991995.1 PFAM: protein of unknown function DUF167; KEGG: dvl:Dvul_1694 hypothetical protein YP_002991996.1 PFAM: DivIVA family protein; KEGG: dvm:DvMF_0150 DivIVA family protein YP_002991997.1 PFAM: protein of unknown function YGGT; KEGG: dvm:DvMF_0149 protein of unknown function YGGT YP_002991998.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: dvl:Dvul_1697 HAD family hydrolase YP_002991999.1 KEGG: dvu:DVU1370 hypothetical protein YP_002992000.1 KEGG: dvl:Dvul_1699 hypothetical protein YP_002992001.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dde:Dde_2177 twin arginine-targeting protein translocase YP_002992002.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sat:SYN_01716 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_002992003.1 KEGG: dvm:DvMF_0143 lipoprotein YP_002992004.1 KEGG: dol:Dole_0036 hypothetical protein YP_002992005.1 KEGG: dde:Dde_1784 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_002992006.1 KEGG: dvm:DvMF_0173 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_002992007.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase ; RNA methylase; KEGG: dvm:DvMF_0172 methyltransferase YP_002992008.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1781 metallo-beta-lactamase family protein YP_002992009.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dal:Dalk_3949 protein of unknown function DUF6 transmembrane YP_002992011.1 PFAM: extracellular solute-binding protein family 1; KEGG: pca:Pcar_2087 hypothetical protein YP_002992012.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_4086 binding-protein-dependent transport systems inner membrane component YP_002992013.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dat:HRM2_32540 CysA YP_002992014.1 PFAM: polysaccharide biosynthesis protein; KEGG: dol:Dole_1836 polysaccharide biosynthesis protein YP_002992015.1 KEGG: pla:Plav_1912 sulfotransferase YP_002992016.1 KEGG: hypothetical protein YP_002992017.1 SMART: ATPase AAA; KEGG: sat:SYN_00778 general secretion pathway protein A YP_002992018.1 TIGRFAM: capsular exopolysaccharide family; KEGG: sat:SYN_00779 tyrosine-protein kinase YP_002992019.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: sat:SYN_01204 chain length determinant protein, Wzz-like protein YP_002992020.1 KEGG: sat:SYN_00781 hypothetical protein YP_002992021.1 PFAM: polysaccharide export protein; KEGG: sat:SYN_00782 periplasmic protein involved in polysaccharide export YP_002992022.1 KEGG: tbd:Tbd_1801 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_002992023.1 PFAM: hypothetical protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: hypothetical protein; KEGG: gme:Gmet_1506 tetratricopeptide TPR_4 YP_002992024.1 TIGRFAM: eight transmembrane protein EpsH; EpsI family protein; KEGG: sat:SYN_01097 hypothetical protein YP_002992025.1 KEGG: cps:CPS_2103 hypothetical protein YP_002992026.1 PFAM: glycosyl transferase group 1; KEGG: nmu:Nmul_A0253 glycosyl transferase, group 1 YP_002992027.1 KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; CBS domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_002992028.1 TIGRFAM: helicase, RecD/TraA family; KEGG: dde:Dde_2725 helicase RecD/TraA YP_002992029.1 TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; KEGG: dvl:Dvul_0187 recombination protein RecR YP_002992030.1 PFAM: hypothetical protein; KEGG: dde:Dde_0067 hypothetical protein YP_002992031.1 KEGG: dvm:DvMF_2269 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA YP_002992032.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002992033.1 PFAM: glycoside hydrolase family 13 domain protein; KEGG: dvm:DvMF_1368 glycoside hydrolase family 13 domain protein YP_002992034.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_2730 aminotransferase YP_002992035.1 PFAM: homoserine dehydrogenase; Semialdehyde dehydrogenase NAD - binding; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: dde:Dde_2731 homoserine dehydrogenase YP_002992036.1 KEGG: gsu:GSU1818 cofactor-independent phosphoglycerate mutase; TIGRFAM: homoserine kinase; phosphonopyruvate decarboxylase-related protein; PFAM: metalloenzyme domain protein YP_002992037.1 PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase YP_002992038.1 PFAM: amidohydrolase 2; KEGG: dvm:DvMF_1422 amidohydrolase 2 YP_002992039.1 KEGG: dal:Dalk_2748 hypothetical protein YP_002992040.1 KEGG: gbm:Gbem_0516 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_002992041.1 PFAM: regulatory protein TetR; KEGG: scl:sce4712 TetR family transcriptional regulator YP_002992042.1 PFAM: cytochrome c class III; KEGG: dde:Dde_3182 cytochrome c3 YP_002992043.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1510 ATPase YP_002992044.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_1509 branched chain amino acid ABC transporter permease protein YP_002992045.1 PFAM: inner-membrane translocator; KEGG: dvl:Dvul_1926 inner-membrane translocator YP_002992046.1 PFAM: basic membrane lipoprotein; KEGG: dps:DP0677 hypothetical protein YP_002992047.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively YP_002992048.1 KEGG: dde:Dde_3087 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002992049.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: dat:HRM2_48810 dipeptidyl anminopeptidase YP_002992050.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dps:DP2071 hypothetical protein YP_002992051.1 KEGG: aeh:Mlg_1929 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_002992052.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein YP_002992053.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; HI0933 family protein; KEGG: dde:Dde_1463 mercuric reductase YP_002992054.1 PFAM: glucokinase; KEGG: dde:Dde_1461 glucokinase YP_002992055.1 KEGG: dat:HRM2_36680 MotA3 YP_002992056.1 PFAM: OmpA/MotB domain protein; KEGG: dat:HRM2_36690 MotB3 YP_002992057.1 KEGG: dar:Daro_1994 metallo-beta-lactamase family protein YP_002992058.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: dvm:DvMF_2587 maf protein YP_002992059.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0193 AMP-binding enzyme family protein YP_002992060.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: vcj:VCD_003673 hypothetical protein YP_002992061.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mxa:MXAN_0496 glyoxalase family protein YP_002992062.1 PFAM: GCN5-related N-acetyltransferase; KEGG: avn:Avin_24790 N-acetyltransferase YP_002992065.1 PFAM: protein of unknown function DUF1271; SMART: zinc finger CDGSH-type domain protein; KEGG: mlo:mlr4660 hypothetical protein YP_002992066.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mmw:Mmwyl1_0101 lysine exporter protein LysE/YggA YP_002992067.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: hch:HCH_03473 amino acid ABC transporter periplasmic protein YP_002992069.1 PFAM: cyclase family protein; KEGG: dal:Dalk_2911 cyclase family protein YP_002992070.1 KEGG: dde:Dde_1017 hypothetical protein YP_002992071.1 PFAM: phosphatidylglycerophosphatase A; KEGG: dds:Ddes_0497 phosphatidylglycerophosphatase A YP_002992072.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein YP_002992073.1 PFAM: hypothetical protein; KEGG: dde:Dde_3632 TolB protein YP_002992074.1 TIGRFAM: protein TolA; TonB family protein; KEGG: dvm:DvMF_2362 protein TolA YP_002992075.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dvm:DvMF_2363 protein TolR YP_002992076.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3629 TolQ protein YP_002992077.1 PFAM: silent information regulator protein Sir2; KEGG: nam:NAMH_0804 NAD-dependent deacetylase YP_002992078.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pca:Pcar_1215 hypothetical protein YP_002992079.1 PFAM: protein of unknown function DUF151; KEGG: dvm:DvMF_1331 protein of unknown function DUF151 YP_002992080.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002992082.1 KEGG: similar to predicted protein YP_002992084.1 KEGG: dol:Dole_0842 YD repeat-containing protein YP_002992085.1 KEGG: dvm:DvMF_0438 hypothetical protein YP_002992086.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_002992087.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: dvl:Dvul_1517 iojap-like protein YP_002992088.1 KEGG: dde:Dde_2084 phenylacetate-CoA ligase YP_002992089.1 PFAM: amino acid-binding ACT domain protein; KEGG: dvl:Dvul_1522 amino acid-binding ACT domain-containing protein YP_002992090.1 PFAM: protein of unknown function UPF0027; KEGG: rfr:Rfer_3852 hypothetical protein YP_002992091.1 PFAM: Hpt domain protein; SMART: Hpt domain protein; KEGG: dvm:DvMF_0217 Hpt protein YP_002992092.1 PFAM: potassium transporter; KEGG: sfu:Sfum_1808 K+ potassium transporter YP_002992094.1 KEGG: cla:Cla_0317 adenylylsulfate kinase YP_002992095.1 KEGG: scl:sce6010 hypothetical protein YP_002992096.1 PFAM: PfkB domain protein; KEGG: dvm:DvMF_2935 PfkB domain protein YP_002992097.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: dal:Dalk_3429 CutA1 divalent ion tolerance protein YP_002992098.1 KEGG: dvm:DvMF_1979 hypothetical protein YP_002992099.1 KEGG: dvm:DvMF_2937 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_002992100.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002992101.1 PFAM: protein of unknown function DUF218; KEGG: dde:Dde_2846 hypothetical protein YP_002992102.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_3029 carbon monoxide dehydrogenase accessory protein CooC YP_002992103.1 KEGG: dde:Dde_3028 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_002992104.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dde:Dde_3027 Crp/FNR family transcriptional regulator YP_002992105.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: dde:Dde_3064 ribonuclease BN YP_002992106.1 PFAM: AsmA family protein; KEGG: tgr:Tgr7_2948 AsmA family protein YP_002992107.1 PFAM: protein of unknown function DUF89; KEGG: dvl:Dvul_0388 hypothetical protein YP_002992108.1 KEGG: dps:DP1398 hypothetical protein YP_002992109.1 PFAM: cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_2263 cobyrinic acid ac-diamide synthase YP_002992110.1 PFAM: cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3201 iron-sulfur cluster-binding/ATPase domain-containing protein YP_002992111.1 PFAM: Protein of unknown function CGGC region; KEGG: dal:Dalk_2266 protein of unknown function CGGC region YP_002992112.1 TIGRFAM: regulatory protein, FmdB family; KEGG: dal:Dalk_2386 regulatory protein, FmdB family YP_002992113.1 KEGG: ilo:IL0688 periplasmic substrate-binding protein YP_002992114.1 PFAM: protein of unknown function DUF1009; KEGG: dvm:DvMF_3002 protein of unknown function DUF1009 YP_002992115.1 KEGG: dde:Dde_1374 UDP-N-acetylglucosamine acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_002992116.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: dvl:Dvul_0895 Fis family transcriptional regulator YP_002992117.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; transferase hexapeptide repeat containing protein; KEGG: dvm:DvMF_2999 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_002992118.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: dvm:DvMF_2998 outer membrane chaperone Skp (OmpH) YP_002992119.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dvm:DvMF_2996 outer membrane protein assembly complex, YaeT protein YP_002992120.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvl:Dvul_0890 ABC transporter YP_002992121.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1366 LolC/E family lipoprotein releasing system, transmembrane protein YP_002992122.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_1365 lysyl-tRNA synthetase YP_002992123.1 KEGG: vcj:VCD_000360 hypothetical protein YP_002992124.1 KEGG: dat:HRM2_24520 hypothetical protein YP_002992125.1 KEGG: dol:Dole_2125 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_002992126.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: dvm:DvMF_0178 outer membrane chaperone Skp (OmpH) YP_002992127.1 KEGG: asa:ASA_3859 hypothetical protein YP_002992129.1 PFAM: Na+/Picotransporter; KEGG: tgr:Tgr7_0444 hypothetical protein YP_002992130.1 KEGG: dde:Dde_2854 hypothetical protein YP_002992131.1 KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002992132.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gur:Gura_3532 iron-containing alcohol dehydrogenase YP_002992133.1 KEGG: sat:SYN_01420 cytoplasmic protein YP_002992134.1 TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: dal:Dalk_5021 transcriptional regulator, ArgP, LysR family YP_002992135.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dvl:Dvul_2359 lysine exporter protein LysE/YggA YP_002992136.1 PFAM: branched-chain amino acid ABC transporter; KEGG: gbm:Gbem_1388 branched-chain amino acid ABC transporter YP_002992137.1 PFAM: AzlC family protein; KEGG: gbm:Gbem_1389 AzlC family protein YP_002992138.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PTS system fructose subfamily IIA component; PEP-utilising protein mobile region; phosphoryl transfer system HPr; KEGG: dvm:DvMF_2584 phosphoenolpyruvate-protein phosphotransferase YP_002992139.1 TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: dde:Dde_1179 DAK2 domain-containing protein YP_002992140.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase YP_002992141.1 PFAM: protein of unknown function DUF1555; KEGG: sat:SYN_01117 hypothetical protein YP_002992143.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ppr:PBPRB1561 ribose operon repressor, RbsR YP_002992144.1 TIGRFAM: ribokinase; PFAM: PfkB domain protein; phosphomethylpyrimidine kinase type-1; KEGG: vfm:VFMJ11_1544 ribokinase YP_002992145.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system YP_002992146.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B YP_002992147.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain YP_002992148.1 PFAM: RbsD or FucU transport; KEGG: vfm:VFMJ11_1540 high affinity ribose transport protein RbsD YP_002992149.1 KEGG: aha:AHA_4142 hypothetical protein YP_002992150.1 PFAM: glycosyl transferase family 2; KEGG: dvm:DvMF_0756 glycosyl transferase family 2 YP_002992151.1 PFAM: hypothetical protein; KEGG: dvm:DvMF_0758 hypothetical protein YP_002992153.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0483 ATPase YP_002992154.1 KEGG: dde:Dde_0484 hypothetical protein YP_002992155.1 KEGG: dde:Dde_0485 hypothetical protein YP_002992156.1 PFAM: protein of unknown function DUF204; KEGG: dvl:Dvul_0455 hypothetical protein YP_002992157.1 PFAM: alpha/beta hydrolase fold; KEGG: dde:Dde_1531 hypothetical protein YP_002992158.1 KEGG: glo:Glov_3445 Hpt sensor hybrid histidine kinase YP_002992159.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dvl:Dvul_0339 methyl-accepting chemotaxis sensory transducer YP_002992160.1 PFAM: stress responsive alpha-beta barrel domain protein; KEGG: dvl:Dvul_0264 stress responsive alpha-beta barrel domain-containing protein YP_002992161.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dvl:Dvul_0339 methyl-accepting chemotaxis sensory transducer YP_002992162.1 PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dps:DP1019 hypothetical protein YP_002992163.1 PFAM: protein of unknown function DUF162; KEGG: dde:Dde_3244 hypothetical protein YP_002992164.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: dde:Dde_3242 acetate kinase YP_002992165.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_002992166.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP1021 glycolate oxidase, iron-sulfur subunit (GlcF) YP_002992167.1 PFAM: FAD linked oxidase domain protein; KEGG: dps:DP1022 glycolate oxidase subunit (GlcD) YP_002992168.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dps:DP1023 hypothetical protein YP_002992169.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dps:DP1024 Ntr family two-component response regulator YP_002992170.1 KEGG: dps:DP1025 Ntr family two-component system sensory/regulatory protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_002992171.1 KEGG: pla:Plav_1708 hypothetical protein YP_002992173.1 KEGG: ftn:FTN_1736 hypothetical protein YP_002992174.1 KEGG: dde:Dde_3030 hypothetical protein YP_002992175.1 KEGG: dde:Dde_3031 hypothetical protein YP_002992176.1 KEGG: dde:Dde_3032 hypothetical protein YP_002992177.1 KEGG: dde:Dde_3033 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002992178.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_0539 response regulator receiver protein YP_002992179.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: rhodanese domain protein; KEGG: dol:Dole_1052 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002992180.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dvm:DvMF_2301 molybdenum cofactor biosynthesis protein C YP_002992181.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002992182.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: dvl:Dvul_0146 DNA-directed RNA polymerase, omega subunit YP_002992183.1 KEGG: dde:Dde_0246 hypothetical protein YP_002992184.1 PFAM: PP-loop domain protein; KEGG: dvl:Dvul_0147 PP-loop domain-containing protein YP_002992185.1 PFAM: peptidase M23; KEGG: dde:Dde_0243 M24/M37 family peptidase YP_002992186.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: dvm:DvMF_2016 flagellar biosynthetic protein FliR YP_002992187.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_002992188.1 membrane protein involved in the flagellar export apparatus YP_002992189.1 KEGG: dde:Dde_0381 flagellar biosynthesis protein FlhF YP_002992190.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: dvm:DvMF_2012 cobyrinic acid ac-diamide synthase YP_002992191.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 type 2; KEGG: dvl:Dvul_0159 FliA/WhiG family RNA polymerase sigma factor YP_002992192.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvm:DvMF_2010 response regulator receiver protein YP_002992193.1 PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_0385 flagellar basal body-associated protein YP_002992194.1 KEGG: dde:Dde_0386 hypothetical protein YP_002992195.1 KEGG: dvm:DvMF_2007 hypothetical protein YP_002992196.1 KEGG: dde:Dde_0388 hypothetical protein YP_002992197.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: mms:mma_0018 methyl-accepting chemotaxis protein YP_002992198.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_002992199.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase type 11; methyltransferase small; methyltransferase type 12; ribosomal L11 methyltransferase; KEGG: dvu:DVU2916 HemK protein YP_002992200.1 TIGRFAM: peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein; KEGG: dde:Dde_2984 peptide chain release factor 1 YP_002992201.1 PFAM: protein of unknown function DUF1385; KEGG: dde:Dde_2983 lipoprotein YP_002992202.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: dvl:Dvul_0453 50S ribosomal protein L31 YP_002992203.1 KEGG: dde:Dde_0762 dissimilatory sulfite reductase, gamma subunit; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein YP_002992204.1 PFAM: protein of unknown function DUF181; TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: dvl:Dvul_1028 hypothetical protein YP_002992205.1 KEGG: dvl:Dvul_1029 methyltransferase small YP_002992206.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: dvl:Dvul_1083 TraR/DksA family transcriptional regulator YP_002992207.1 PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: dde:Dde_2344 hypothetical protein YP_002992208.1 KEGG: dvm:DvMF_2067 hypothetical protein YP_002992209.1 KEGG: dde:Dde_2351 hypothetical protein YP_002992210.1 KEGG: dde:Dde_2352 hypothetical protein YP_002992211.1 PFAM: glycosyl transferase family 2; KEGG: dal:Dalk_2812 glycosyl transferase family 2 YP_002992212.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein YP_002992213.1 KEGG: dde:Dde_3065 membrane-bound lytic murein transglycosylase B-like YP_002992214.1 PFAM: outer membrane efflux protein; KEGG: dde:Dde_3627 outer membrane efflux protein YP_002992215.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dvm:DvMF_1339 molybdenum cofactor synthesis domain protein YP_002992216.1 PFAM: protein of unknown function DUF1614; KEGG: sfu:Sfum_0878 protein of unknown function DUF1614 YP_002992217.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: ecd:ECDH10B_2189 glucose-1-phosphate thymidylyltransferase YP_002992220.1 PFAM: type IV pilus assembly PilZ; KEGG: dvm:DvMF_0818 type IV pilus assembly PilZ YP_002992221.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dvm:DvMF_0209 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YP_002992222.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sat:SYN_00226 signal transduction histidine kinase YP_002992223.1 KEGG: dde:Dde_2478 hypothetical protein YP_002992225.1 KEGG: dde:Dde_2591 hypothetical protein YP_002992226.1 KEGG: dvl:Dvul_0780 hypothetical protein YP_002992227.1 PFAM: lipolytic protein G-D-S-L family; KEGG: rpe:RPE_0303 lipolytic enzyme, G-D-S-L family YP_002992228.1 PFAM: patatin; KEGG: lhk:LHK_03113 probable transmembrane protein YP_002992229.1 PFAM: extracellular ligand-binding receptor; KEGG: cjd:JJD26997_0769 high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein YP_002992230.1 PFAM: hypothetical protein; KEGG: vfi:VF_A0098 inner membrane protein YP_002992231.1 PFAM: protein of unknown function DUF181; KEGG: dvl:Dvul_1835 hypothetical protein YP_002992232.1 KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_002992233.1 KEGG: sfu:Sfum_1120 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: regulatory protein LuxR; PAS domain containing protein YP_002992234.1 PFAM: histidine kinase A domain protein; SMART: histidine kinase A domain protein; KEGG: glo:Glov_3113 multi-sensor hybrid histidine kinase YP_002992235.1 KEGG: dat:HRM2_p00340 predicted sensory/regulatory protein RpfC; TIGRFAM: PAS sensor protein; PFAM: histidine kinase A domain protein; SMART: histidine kinase A domain protein; PAS domain containing protein YP_002992236.1 KEGG: glo:Glov_1547 extracellular solute-binding protein family 1 YP_002992237.1 PFAM: protein of unknown function DUF997; KEGG: dde:Dde_3322 membrane protein-like YP_002992238.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase YP_002992239.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pub:SAR11_1175 phosphate transport regulon regulator PhoU YP_002992240.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: dde:Dde_1554 thiamine biosynthesis protein ThiS YP_002992241.1 PFAM: thiazole biosynthesis family protein; KEGG: dde:Dde_1555 thiazole synthase YP_002992242.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center YP_002992243.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate YP_002992244.1 KEGG: dvu:DVU2091 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_002992245.1 KEGG: dde:Dde_0088 hypothetical protein YP_002992246.1 KEGG: dde:Dde_0088 hypothetical protein YP_002992247.1 KEGG: dde:Dde_0088 hypothetical protein YP_002992249.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bvi:Bcep1808_7674 methyltransferase type 11 YP_002992250.1 PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_3515 formate dehydrogenase formation protein FdhE YP_002992251.1 KEGG: dat:HRM2_03440 FdhB2 YP_002992252.1 KEGG: dat:HRM2_03430 FdhA2; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_002992253.1 KEGG: eba:ebA2161 hypothetical protein YP_002992255.1 PFAM: OsmC family protein; KEGG: dvm:DvMF_3179 OsmC family protein YP_002992256.1 KEGG: abo:ABO_0849 hypothetical protein YP_002992257.1 PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: dps:DP2330 indole-3-pyruvate decarboxylase YP_002992258.1 PFAM: regulatory protein LysR; KEGG: sfu:Sfum_0033 transcriptional regulator, ModE family YP_002992259.1 PFAM: formylmethanofuran dehydrogenase subunit E region; molybdopterin binding domain; KEGG: dvl:Dvul_2793 molybdopterin binding domain-containing protein YP_002992260.1 PFAM: beta-lactamase domain protein; KEGG: bpy:Bphyt_5423 beta-lactamase domain protein YP_002992261.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bpy:Bphyt_5426 transcriptional regulator, LysR family YP_002992262.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: dps:DP1366 hypothetical protein YP_002992263.1 KEGG: dat:HRM2_07950 ABC-type transporter substrate binding protein YP_002992264.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_07960 ABC-type transporter membrane spanning protein YP_002992265.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dat:HRM2_07970 ABC-type transporter ATP-binding protein YP_002992266.1 PFAM: protein of unknown function DUF188; KEGG: saz:Sama_3557 hypothetical protein YP_002992267.1 KEGG: dat:HRM2_37970 two-component fusion protein (N:acyl-CoA reductase-C:coenzyme F390 synthetase) YP_002992268.1 PFAM: Dual specificity protein phosphatase; SMART: Dual specificity protein phosphatase; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase YP_002992269.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dat:HRM2_46050 PpsA9 YP_002992270.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Cache domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: gme:Gmet_1707 PAS/PAC sensor hybrid histidine kinase YP_002992271.1 KEGG: hypothetical protein YP_002992272.1 PFAM: beta-lactamase domain protein; rhodanese domain protein; SMART: rhodanese domain protein; KEGG: dat:HRM2_35830 metallo-beta-lactamase superfamily protein YP_002992273.1 PFAM: Metal-dependent hydrolase HDOD; metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_3231 signal transduction protein YP_002992274.1 PFAM: Metal-dependent hydrolase HDOD; metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_3231 signal transduction protein YP_002992275.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: dal:Dalk_1693 NAD-dependent epimerase/dehydratase YP_002992276.1 KEGG: lch:Lcho_0022 transmembrane protein YP_002992277.1 PFAM: glycosyl transferase group 1; KEGG: pha:PSHAa0704 hypothetical protein YP_002992278.1 KEGG: nmu:Nmul_A2435 hypothetical protein YP_002992279.1 PFAM: GAF domain protein; GGDEF domain containing protein; SMART: GAF domain protein; GGDEF domain containing protein; KEGG: dol:Dole_1741 diguanylate cyclase YP_002992280.1 PFAM: sporulation domain protein; KEGG: dde:Dde_2070 hypothetical protein YP_002992281.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: TPR Domain containing protein YP_002992282.1 KEGG: ajs:Ajs_0773 polysaccharide deacetylase YP_002992283.1 PFAM: TM1410 hypothetical-related protein; KEGG: rso:RSc2276 signal peptide protein YP_002992284.1 KEGG: nmu:Nmul_A2437 lipoprotein YP_002992285.1 TIGRFAM: cysteinyl-tRNA synthetase; PFAM: TM1410 hypothetical-related protein; KEGG: rsq:Rsph17025_4079 sulfate ABC transporter periplasmic sulfate-binding protein YP_002992286.1 PFAM: high-affinity nickel-transporter; KEGG: gur:Gura_2769 high-affinity nickel-transporter YP_002992287.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_2217 TetR family transcriptional regulator YP_002992288.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_2216 extracellular solute-binding protein YP_002992289.1 KEGG: dat:HRM2_35010 TRAP-type C4-dicarboxylate transport system, small permease component YP_002992290.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dde:Dde_2214 TRAP dicarboxylate transporter-DctM subunit YP_002992293.1 PFAM: citrate transporter; KEGG: dal:Dalk_1272 TrkA-C domain protein YP_002992294.1 PFAM: protein of unknown function DUF939; KEGG: dde:Dde_0097 hypothetical protein YP_002992295.1 KEGG: dps:DP2816 hypothetical protein YP_002992296.1 PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dal:Dalk_4205 transcriptional regulator, AraC family YP_002992297.1 PFAM: transcription activator effector binding; KEGG: dal:Dalk_4205 transcriptional regulator, AraC family YP_002992298.1 KEGG: cla:Cla_0124 hypothetical protein, probable ATP/GTP-binding protein YP_002992299.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: abu:Abu_1051 AraC family transcriptional regulator YP_002992300.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002992301.1 PFAM: rubrerythrin; rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_1320 rubrerythrin YP_002992302.1 KEGG: dvl:Dvul_0317 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA YP_002992303.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dde:Dde_0975 pseudouridylate synthase 23S RNA-specific-like YP_002992304.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dal:Dalk_4375 protein of unknown function DUF6 transmembrane YP_002992305.1 PFAM: UvrD/REP helicase; KEGG: dde:Dde_1588 ATP-dependent DNA helicase UvrD YP_002992306.1 KEGG: dde:Dde_1587 hypothetical protein YP_002992307.1 PFAM: FAD dependent oxidoreductase; KEGG: gbm:Gbem_2022 FAD dependent oxidoreductase YP_002992308.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: dde:Dde_1586 2-nitropropane dioxygenase family oxidoreductase YP_002992309.1 KEGG: HSP70G; ER-located HSP110/SSE-like protein YP_002992310.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dde:Dde_1585 site-specific recombinase XerD-like YP_002992311.1 PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase YP_002992312.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD; KEGG: dde:Dde_1583 signal transduction protein YP_002992313.1 KEGG: dvm:DvMF_0770 hypothetical protein YP_002992314.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA YP_002992315.1 TIGRFAM: tol-pal system protein YbgF; KEGG: dde:Dde_1580 TPR domain-containing protein YP_002992316.1 KEGG: dde:Dde_1579 hypothetical protein YP_002992317.1 PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: Hpt domain protein; ATP-binding region ATPase domain protein; CheW domain protein; KEGG: dde:Dde_1577 CheA signal transduction histidine kinase YP_002992318.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvm:DvMF_0775 response regulator receiver protein YP_002992319.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: dde:Dde_1575 CheW protein YP_002992320.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: dvl:Dvul_1153 cobyrinic acid a,c-diamide synthase YP_002992321.1 KEGG: dde:Dde_1573 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_002992322.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: dvm:DvMF_0779 PBS lyase heat domain protein repeat-containing protein YP_002992323.1 KEGG: dvl:Dvul_1150 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver YP_002992324.1 KEGG: geo:Geob_2863 hypothetical protein YP_002992325.1 KEGG: ecw:EcE24377A_0289 HsdR family type I site-specific deoxyribonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase YP_002992326.1 PFAM: FRG domain protein; KEGG: rle:pRL110100 hypothetical protein YP_002992327.1 PFAM: restriction modification system DNA specificity domain; KEGG: rfr:Rfer_0030 restriction modification system DNA specificity subunit YP_002992328.1 PFAM: N-6 DNA methylase; KEGG: neu:NE0385 site-specific DNA-methyltransferase, type I modification YP_002992329.1 KEGG: ajs:Ajs_3614 phage integrase family protein YP_002992330.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; RNA binding S1 domain protein; KEGG: cti:RALTA_A1292 sensor hybrid histidine kinase YP_002992331.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: amc:MADE_00426 two-component system sensor kinase/response regulator fusion protein YP_002992332.1 KEGG: hypothetical protein YP_002992334.1 KEGG: dol:Dole_0415 filamentation induced by cAMP protein Fic YP_002992336.1 KEGG: bja:bll0052 hypothetical protein YP_002992338.1 PFAM: integrase family protein; KEGG: dal:Dalk_4784 integrase family protein YP_002992339.1 PFAM: KAP P-loop domain protein; KEGG: ccv:CCV52592_0416 hypothetical protein YP_002992340.1 PFAM: protein of unknown function UPF0118; KEGG: azo:azo3137 hypothetical protein YP_002992341.1 KEGG: dat:HRM2_46930 hypothetical protein YP_002992342.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dvm:DvMF_0594 intracellular protease, PfpI family YP_002992343.1 PFAM: rhodanese domain protein; SMART: rhodanese domain protein; KEGG: aha:AHA_0294 rhodanese domain-containing protein YP_002992344.1 PFAM: regulatory protein TetR; KEGG: spc:Sputcn32_3687 TetR family transcriptional regulator YP_002992345.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_0985 ABC transporter protein YP_002992346.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gbm:Gbem_0984 polar amino acid ABC transporter inner membrane subunit YP_002992347.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: gbm:Gbem_0983 extracellular solute-binding protein family 3 YP_002992348.1 PFAM: heat shock protein Hsp20; CS; KEGG: dvm:DvMF_0311 heat shock protein HSP20 YP_002992349.1 PFAM: peptidase S16 lon domain protein; KEGG: dde:Dde_2007 ATP-dependent protease YP_002992350.1 PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dds:Ddes_0301 methyl-accepting chemotaxis sensory transducer with cache sensor YP_002992351.1 KEGG: pca:Pcar_0523 acyltransferase family protein YP_002992352.1 PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dds:Ddes_0301 methyl-accepting chemotaxis sensory transducer with cache sensor YP_002992353.1 PFAM: purine or other phosphorylase family 1; KEGG: pca:Pcar_2078 nucleoside phosphorylase YP_002992354.1 KEGG: noc:Noc_1745 oxidoreductase; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002992355.1 KEGG: pca:Pcar_2080 hypothetical protein YP_002992356.1 KEGG: pca:Pcar_2081 hypothetical protein YP_002992357.1 KEGG: pca:Pcar_2082 RND superfamily exporter YP_002992358.1 PFAM: aminotransferase class-III; KEGG: pca:Pcar_2083 ornithine/acetylornithine aminotransferase YP_002992359.1 KEGG: dde:Dde_0390 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_002992360.1 PFAM: acriflavin resistance protein; KEGG: hch:HCH_05601 cation/multidrug efflux pump YP_002992361.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pca:Pcar_3002 membrane-fusion protein, component of multidrug efflux system YP_002992362.1 PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: yen:YE2890 DNA-binding transcriptional regulator YP_002992363.1 PFAM: isochorismatase hydrolase; KEGG: aha:AHA_0970 isochorismatase family protein YP_002992364.1 KEGG: dde:Dde_1569 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002992365.1 PFAM: extracellular solute-binding protein family 5; KEGG: dvl:Dvul_1145 extracellular solute-binding protein YP_002992366.1 PFAM: SNF2-related protein; zinc finger SWIM domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like YP_002992367.1 PFAM: type IV pilus assembly PilZ YP_002992371.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: dvm:DvMF_1524 flavin reductase domain protein FMN-binding YP_002992372.1 PFAM: zinc/iron permease; KEGG: dde:Dde_3555 zinc transporter ZupT YP_002992374.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: dat:HRM2_13910 proton/hydrogen exchanger family protein YP_002992375.1 KEGG: dvl:Dvul_2687 TraR/DksA family transcriptional regulator YP_002992376.1 PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dvm:DvMF_0127 methyl-accepting chemotaxis sensory transducer YP_002992377.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_002992378.1 KEGG: ilo:IL0298 signal protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002992380.1 PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_02210 amino acid ABC transporter periplasmic protein YP_002992381.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dde:Dde_1077 methyl-accepting chemotaxis sensory transducer YP_002992382.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002992383.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: dvm:DvMF_0841 glycogen/starch synthase, ADP-glucose type YP_002992384.1 PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/NUDIX family protein YP_002992386.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: dde:Dde_2289 translation factor SUA5 YP_002992387.1 PFAM: glycosyl transferase family 2; KEGG: dvm:DvMF_3143 glycosyl transferase family 2 YP_002992388.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dvl:Dvul_0906 tRNA guanosine-2'-O-methyltransferase YP_002992389.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gme:Gmet_2431 response regulator receiver domain-containing protein YP_002992390.1 SMART: Hpt domain protein; KEGG: cjd:JJD26997_1687 chemotaxis protein CheA YP_002992391.1 KEGG: sat:SYN_00963 chemotaxis protein; PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; SMART: ATP-binding region ATPase domain protein; CheW domain protein YP_002992392.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dvl:Dvul_2131 extracellular solute-binding protein YP_002992393.1 PFAM: anaerobic cobalt chelatase; KEGG: dal:Dalk_0440 anaerobic cobalt chelatase YP_002992394.1 KEGG: dde:Dde_2711 iron-sulfur cluster-binding protein YP_002992395.1 PFAM: ribosomal small subunit Rsm22; KEGG: dvm:DvMF_1399 ribosomal small subunit Rsm22 YP_002992396.1 KEGG: dde:Dde_2713 lipoate-protein ligase B; TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase YP_002992397.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002992398.1 KEGG: dvl:Dvul_2652 response regulator receiver modulated metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD; response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region YP_002992399.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sat:SYN_01373 hydrogenase transcriptional regulatory protein YP_002992400.1 KEGG: sat:SYN_01374 sensory transduction protein kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_002992401.1 KEGG: mpt:Mpe_A2803 ABC-type Co2+ transport system, periplasmic component YP_002992402.1 PFAM: protein of unknown function DUF785; KEGG: neu:NE0295 hypothetical protein YP_002992403.1 KEGG: noc:Noc_1083 hypothetical protein YP_002992404.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: tgr:Tgr7_2937 alpha-L-glutamate ligase-like protein YP_002992406.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ YP_002992407.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dvl:Dvul_2082 TPR repeat-containing protein YP_002992408.1 KEGG: dvl:Dvul_2083 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_002992409.1 KEGG: dvl:Dvul_2084 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_002992410.1 PFAM: protein of unknown function DUF370; KEGG: dvm:DvMF_1139 hypothetical protein YP_002992411.1 PFAM: domain of unknown function DUF1732; YicC domain protein; KEGG: dde:Dde_2721 hypothetical protein YP_002992412.1 KEGG: dde:Dde_2722 hypothetical protein; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_002992413.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dol:Dole_2349 DEAD/DEAH box helicase domain-containing protein YP_002992415.1 KEGG: dde:Dde_1492 hypothetical protein YP_002992417.1 KEGG: dde:Dde_0563 hypothetical protein YP_002992418.1 KEGG: dde:Dde_0564 hypothetical protein YP_002992419.1 PFAM: glycosyl transferase family 9; KEGG: dvl:Dvul_2523 glycosyl transferase family protein YP_002992420.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_3207 acetyl-coenzyme A synthetase YP_002992421.1 PFAM: pirin; KEGG: dps:DP1287 pirin YP_002992422.1 PFAM: nitroreductase; KEGG: dps:DP2706 nitroreductase YP_002992423.1 PFAM: major facilitator superfamily MFS_1; KEGG: sat:SYN_02140 oxalate/formate antiporter YP_002992424.1 KEGG: dde:Dde_3701 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_002992425.1 KEGG: dde:Dde_1702 hypothetical protein YP_002992426.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1701 elongator protein 3/MiaB/NifB YP_002992427.1 KEGG: rec:RHECIAT_CH0001706 two-component response regulator protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002992428.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: geo:Geob_3792 metal dependent phosphohydrolase YP_002992429.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dds:Ddes_0455 single-strand binding protein YP_002992430.1 KEGG: lip:LI0491 hypothetical protein YP_002992431.1 KEGG: dvl:Dvul_1017 hypothetical protein YP_002992432.1 PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: dvm:DvMF_0816 acetyl-CoA carboxylase YP_002992433.1 PFAM: carbamoyl-phosphate synthetase large chain domain protein; carbamoyl-phosphate synthase L chain ATP-binding; KEGG: dds:Ddes_0460 pyruvate carboxylase YP_002992434.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1540 hypothetical protein YP_002992435.1 PFAM: OmpA/MotB domain protein; KEGG: dvl:Dvul_1013 OmpA/MotB domain-containing protein YP_002992436.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dvl:Dvul_1012 MotA/TolQ/ExbB proton channel YP_002992437.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine or other phosphorylase family 1; KEGG: dvu:DVU2230 purine nucleoside phosphorylase YP_002992438.1 KEGG: dal:Dalk_0240 hypothetical protein YP_002992439.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP2828 hypothetical protein YP_002992440.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_002992441.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU3449 ferredoxin family protein YP_002992442.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2389 iron-sulfur cluster-binding protein YP_002992443.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like YP_002992444.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sfu:Sfum_3445 transcriptional regulator, Crp/Fnr family YP_002992445.1 PFAM: response regulator receiver; CheW domain protein; SMART: response regulator receiver; CheW domain protein; KEGG: dvm:DvMF_2021 response regulator receiver modulated CheW protein YP_002992446.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: hypothetical protein; KEGG: bxe:Bxe_A3016 TPR/sulfotransferase domain-containing protein YP_002992447.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mmw:Mmwyl1_2823 HlyD family type I secretion membrane fusion protein YP_002992448.1 PFAM: ABC transporter; ABC transporter transmembrane protein; SMART: ATPase AAA; KEGG: bbr:BB1189 ABC transporter YP_002992449.1 PFAM: outer membrane efflux protein; KEGG: asa:ASA_1671 type I secretion outer membrane protein, TolC YP_002992450.1 PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: dol:Dole_0034 TPR repeat-containing adenylate/guanylate cyclase YP_002992451.1 KEGG: tcx:Tcr_1005 hypothetical protein YP_002992452.1 KEGG: tcx:Tcr_1004 hypothetical protein YP_002992453.1 TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Cysteinyl-tRNA synthetase class Ia; KEGG: dal:Dalk_3820 cysteine synthase YP_002992454.1 PFAM: protein of unknown function DUF115; KEGG: dde:Dde_2415 hypothetical protein YP_002992455.1 KEGG: hypothetical protein YP_002992457.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: dvl:Dvul_1842 phosphoesterase, PA-phosphatase related YP_002992458.1 PFAM: glycosyl transferase family 39; KEGG: dde:Dde_2420 dolichyl-phosphate-mannose-protein mannosyltransferase family protein YP_002992459.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD; response regulator receiver; metal-dependent phosphohydrolase HD sub domain; KEGG: dvu:DVU0330 response regulator YP_002992460.1 KEGG: dvm:DvMF_0449 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002992461.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0544 periplasmic sensor hybrid histidine kinase YP_002992462.1 KEGG: dvm:DvMF_1856 hypothetical protein YP_002992463.1 KEGG: sat:SYN_00231 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_002992464.1 KEGG: sat:SYN_01420 cytoplasmic protein YP_002992465.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0232 ATPase YP_002992466.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0233 ABC transporter permease protein YP_002992467.1 KEGG: dde:Dde_0234 ABC transporter periplasmic substrate-binding protein YP_002992468.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: sfu:Sfum_1205 formate dehydrogenase family accessory protein FdhD YP_002992469.1 PFAM: formate dehydrogenase accessory protein; KEGG: dvl:Dvul_2375 formate dehydrogenase formation protein FdhE YP_002992470.1 KEGG: dvl:Dvul_2372 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002992471.1 KEGG: dvl:Dvul_2368 transposase YP_002992472.1 KEGG: rsh:Rsph17029_3007 hypothetical protein YP_002992473.1 KEGG: pca:Pcar_2449 GGDEF domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002992474.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002992475.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002992476.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_002992477.1 PFAM: protein of unknown function DUF28; KEGG: dde:Dde_2325 hypothetical protein YP_002992478.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dvl:Dvul_0985 ribosomal RNA methyltransferase RrmJ/FtsJ YP_002992479.1 KEGG: dvl:Dvul_0984 hypothetical protein YP_002992480.1 KEGG: dde:Dde_2000 transport-associated protein YP_002992481.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: rsh:Rsph17029_4146 GntR family transcriptional regulator YP_002992482.1 PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dvl:Dvul_0949 methyl-accepting chemotaxis sensory transducer YP_002992483.1 KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein YP_002992484.1 KEGG: hypothetical protein YP_002992485.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: dat:HRM2_25020 HTH-type transcriptional regulator YP_002992486.1 KEGG: aha:AHA_4234 2-amino-3-ketobutyrate coenzyme A ligase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II; glycine hydroxymethyltransferase; aminotransferase class-III YP_002992487.1 TIGRFAM: L-threonine 3-dehydrogenase; PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: vcm:VCM66_A0845 threonine 3-dehydrogenase YP_002992489.1 PFAM: AsmA family protein; KEGG: tgr:Tgr7_2948 AsmA family protein YP_002992491.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: lip:LI0217 transcriptional regulator YP_002992492.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: gur:Gura_0466 ECF subfamily RNA polymerase sigma-24 factor YP_002992493.1 KEGG: gur:Gura_1377 hypothetical protein YP_002992494.1 KEGG: gur:Gura_0465 hypothetical protein YP_002992495.1 PFAM: GCN5-related N-acetyltransferase; RimK domain protein ATP-grasp; KEGG: lpc:LPC_2964 ribosomal protein S6 modification protein YP_002992496.1 PFAM: TraT complement resistance family protein; KEGG: tdn:Suden_0647 TraT complement resistance YP_002992498.1 KEGG: dal:Dalk_0281 hypothetical protein YP_002992499.1 PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: abb:ABBFA_001121 AraC-like ligand binding domain protein YP_002992500.1 PFAM: MscS Mechanosensitive ion channel; KEGG: dde:Dde_3447 mechanosensitive ion channel family protein YP_002992501.1 PFAM: hypothetical protein; KEGG: dal:Dalk_0015 hypothetical protein YP_002992502.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: dat:HRM2_38430 CorA2 YP_002992503.1 KEGG: dat:HRM2_29300 YodO; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM domain protein YP_002992504.1 PFAM: sodium:dicarboxylate symporter; KEGG: dat:HRM2_45810 proton/sodium-glutamate symport protein YP_002992505.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dvm:DvMF_2972 glycerophosphodiester phosphodiesterase YP_002992506.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ppw:PputW619_0907 ABC transporter YP_002992507.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vha:VIBHAR_02363 hypothetical protein YP_002992508.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_3559 polar amino acid ABC transporter inner membrane subunit YP_002992509.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: mmw:Mmwyl1_4393 extracellular solute-binding protein YP_002992510.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH; KEGG: spe:Spro_4489 GntR family transcriptional regulator YP_002992511.1 KEGG: hypothetical protein YP_002992512.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_002992513.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: lpn:lpg2158 hypothetical protein YP_002992514.1 KEGG: dvl:Dvul_1611 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_002992515.1 KEGG: dvm:DvMF_0486 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_002992516.1 KEGG: dvm:DvMF_0487 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_002992517.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: dde:Dde_2127 50S ribosomal protein L25/general stress protein Ctc YP_002992518.1 KEGG: dvm:DvMF_0489 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_002992519.1 PFAM: transcription factor CarD; KEGG: dde:Dde_2129 CarD family transcriptional regulator YP_002992520.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002992521.1 PFAM: peptidase M48 Ste24p; TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_2122 TPR repeat-containing protein YP_002992522.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: riboflavin kinase; FAD synthetase; KEGG: dvm:DvMF_1762 riboflavin biosynthesis protein RibF YP_002992523.1 PFAM: chloride channel core; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dde:Dde_3504 chloride channel family protein YP_002992524.1 KEGG: hypothetical protein YP_002992525.1 KEGG: dde:Dde_0088 hypothetical protein YP_002992526.1 heat shock protein involved in degradation of misfolded proteins YP_002992527.1 KEGG: dde:Dde_2014 ATP-dependent protease ATP-binding subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: ATPase AAA YP_002992528.1 PFAM: TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dvm:DvMF_1136 hypothetical protein YP_002992529.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: dvm:DvMF_1808 protein of unknown function DUF1078 domain protein YP_002992530.1 PFAM: rubrerythrin; KEGG: dvm:DvMF_0328 hypothetical protein YP_002992531.1 PFAM: aminotransferase class I and II; KEGG: dvm:DvMF_0908 histidinol-phosphate aminotransferase YP_002992533.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: sat:SYN_00432 methyl-accepting chemotaxis protein YP_002992534.1 PFAM: extracellular ligand-binding receptor; KEGG: dvm:DvMF_1166 extracellular ligand-binding receptor YP_002992535.1 PFAM: inner-membrane translocator; KEGG: dvm:DvMF_1165 inner-membrane translocator YP_002992536.1 PFAM: inner-membrane translocator; KEGG: dvm:DvMF_1164 inner-membrane translocator YP_002992537.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvl:Dvul_0565 ABC transporter YP_002992538.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvm:DvMF_1162 ABC transporter YP_002992539.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: dat:HRM2_43150 5-nitroimidazole antibiotic resistance protein YP_002992540.1 PFAM: protein of unknown function UPF0126; KEGG: rpd:RPD_3918 hypothetical protein YP_002992541.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: abo:ABO_1563 formyltetrahydrofolate deformylase YP_002992542.1 KEGG: dvm:DvMF_0924 hypothetical protein YP_002992545.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM domain protein; KEGG: dvm:DvMF_1818 radical SAM domain protein YP_002992546.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002992547.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvl:Dvul_1780 response regulator receiver protein YP_002992548.1 KEGG: rpd:RPD_1494 protein-glutamate O-methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_002992549.1 PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: dvl:Dvul_2451 diguanylate phosphodiesterase YP_002992550.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_002992551.1 PFAM: Domain of unknown function DUF1844; KEGG: dds:Ddes_0803 domain of unknown function DUF1844 YP_002992552.1 KEGG: dde:Dde_3450 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: DNA-directed DNA polymerase; Helix-hairpin-helix domain protein class 2; 5'-3' exonuclease YP_002992553.1 PFAM: phosphoesterase RecJ domain protein; KEGG: dde:Dde_3494 DHH family protein YP_002992554.1 PFAM: cobalbumin biosynthesis protein; KEGG: dde:Dde_3495 adenosylcobinamide kinase YP_002992555.1 KEGG: dvl:Dvul_2481 hypothetical protein YP_002992556.1 KEGG: dvl:Dvul_2482 hypothetical protein YP_002992557.1 PFAM: UvrD/REP helicase; PHP domain protein; KEGG: dde:Dde_3499 ATP-dependent DNA helicase UvrD YP_002992558.1 KEGG: bbt:BBta_0546 hypothetical protein YP_002992560.1 PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0275 oligopeptide/dipeptide ABC transporter periplasmic oligopeptide/dipeptide-binding protein YP_002992561.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dal:Dalk_1533 binding-protein-dependent transport systems inner membrane component YP_002992562.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0149 dipeptide ABC transporter permease protein (DppC) YP_002992563.1 KEGG: dvl:Dvul_2802 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002992564.1 KEGG: dvm:DvMF_1825 oligopeptide/dipeptide ABC transporter ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002992565.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dde:Dde_1667 TPR repeat-containing protein YP_002992566.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dde:Dde_1667 TPR repeat-containing protein YP_002992567.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2940 hypothetical protein YP_002992568.1 KEGG: sfu:Sfum_1825 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002992569.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: dol:Dole_0679 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_002992570.1 TIGRFAM: dethiobiotin synthase; KEGG: cvi:CV_0598 dethiobiotin synthase YP_002992571.1 KEGG: dde:Dde_0093 hypothetical protein YP_002992572.1 PFAM: hydantoinaseoxoprolinase domain protein; hydantoinase/oxoprolinase; KEGG: dvu:DVU0029 hydantoinase/oxoprolinase family protein YP_002992573.1 PFAM: protein of unknown function DUF52; KEGG: dvm:DvMF_1326 protein of unknown function DUF52 YP_002992574.1 SMART: hypothetical protein; KEGG: dde:Dde_2960 TPR repeat-containing protein YP_002992575.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dvm:DvMF_1324 sigma54 specific transcriptional regulator, fis family YP_002992576.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: scl:sce8087 major facilitator superfamily permease/glucose transporter YP_002992577.1 PFAM: FAD dependent oxidoreductase; HI0933 family protein; KEGG: dps:DP0272 hypothetical protein YP_002992578.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dol:Dole_2259 BadM/Rrf2 family transcriptional regulator YP_002992579.1 PFAM: protein of unknown function DUF1499; KEGG: mmw:Mmwyl1_1554 hypothetical protein YP_002992580.1 KEGG: dat:HRM2_39110 ThiF YP_002992581.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pfo:Pfl01_2373 twin-arginine translocation pathway signal YP_002992582.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_002992583.1 Inhibits transcription at high concentrations of nickel YP_002992584.1 PFAM: methyltransferase type 11; KEGG: dvl:Dvul_0475 hypothetical protein YP_002992585.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: dde:Dde_1693 glycine cleavage system protein H YP_002992586.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_002992587.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_002992588.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: dvl:Dvul_1653 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002992589.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: hch:HCH_06608 amino acid ABC transporter periplasmic protein YP_002992591.1 PFAM: beta-lactamase domain protein; KEGG: dde:Dde_0786 metallo-beta-lactamase family protein YP_002992592.1 PFAM: DRTGG domain protein; KEGG: dvm:DvMF_0242 DRTGG domain protein YP_002992593.1 PFAM: CoA-binding domain protein; KEGG: dol:Dole_3063 CoA-binding domain-containing protein YP_002992594.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002992595.1 PFAM: flagellin domain protein; KEGG: dde:Dde_1709 flagellin YP_002992596.1 PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal body FlaE domain protein; KEGG: dvm:DvMF_0246 protein of unknown function DUF1078 domain protein YP_002992597.1 PFAM: flagellar hook capping protein; KEGG: dde:Dde_1712 basal-body rod modification protein FlgD YP_002992598.1 PFAM: flagellar hook-length control protein; KEGG: dde:Dde_1713 hypothetical protein YP_002992599.1 PFAM: glycosyl transferase family 9; KEGG: dvm:DvMF_0249 glycosyl transferase family 9 YP_002992600.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_002992601.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002992602.1 PFAM: protein of unknown function UPF0153; KEGG: dat:HRM2_07600 hypothetical protein YP_002992603.1 PFAM: Bile acid:sodium symporter; KEGG: abo:ABO_2515 Na+ symporter family protein YP_002992604.1 PFAM: protein of unknown function DUF472; protein of unknown function DUF470; KEGG: maq:Maqu_2225 hypothetical protein YP_002992605.1 PFAM: Hpt domain protein; KEGG: sat:SYN_00227 cytoplasmic protein YP_002992606.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: sat:SYN_00226 signal transduction histidine kinase YP_002992607.1 PFAM: basic membrane lipoprotein; KEGG: hch:HCH_02309 uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein YP_002992608.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: dde:Dde_2276 small GTP-binding protein domain-containing protein YP_002992609.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002992610.1 KEGG: dvl:Dvul_2679 chemotaxis protein CheX YP_002992611.1 KEGG: pin:Ping_0273 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_002992612.1 KEGG: azc:AZC_2135 hypothetical protein YP_002992613.1 PFAM: peptidase S24 and S26 domain protein; KEGG: dde:Dde_1158 transcriptional regulator YP_002992614.1 PFAM: chaperonin Cpn10; KEGG: dds:Ddes_1547 chaperonin Cpn10 YP_002992615.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002992616.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002992617.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: dds:Ddes_2348 glycine cleavage system H protein YP_002992618.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; HI0933 family protein; KEGG: dds:Ddes_0151 dihydrolipoamide dehydrogenase YP_002992619.1 PFAM: OsmC family protein; KEGG: dds:Ddes_2346 hypothetical protein YP_002992620.1 KEGG: dvu:DVU1955 TPR domain-containing protein YP_002992621.1 PFAM: peptidase M48 Ste24p; KEGG: dat:HRM2_15460 endopeptidase family protein YP_002992622.1 PFAM: class II aldolase/adducin family protein; KEGG: pca:Pcar_3030 L-fuculose-1-phosphate aldolase YP_002992623.1 PFAM: multiple antibiotic resistance (MarC)-related protein; Integral membrane protein TerC; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins YP_002992624.1 KEGG: dvl:Dvul_1570 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_002992625.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: geo:Geob_2267 CheW protein YP_002992626.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dde:Dde_1077 methyl-accepting chemotaxis sensory transducer YP_002992627.1 PFAM: Hpt domain protein; KEGG: glo:Glov_0387 multi-sensor hybrid histidine kinase YP_002992628.1 KEGG: dvm:DvMF_0922 hypothetical protein YP_002992629.1 KEGG: dal:Dalk_3760 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_002992630.1 PFAM: adenosine/AMP deaminase; KEGG: xac:XAC0308 adenosine deaminase YP_002992631.1 KEGG: dvl:Dvul_2715 acidic cytochrome c3 YP_002992632.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3709 ferredoxin, 4Fe-4S YP_002992633.1 KEGG: dde:Dde_3708 hypothetical protein YP_002992634.1 KEGG: dde:Dde_3707 hypothetical protein YP_002992635.1 PFAM: DRTGG domain protein; KEGG: dvl:Dvul_1641 DRTGG domain-containing protein YP_002992636.1 PFAM: CoA-binding domain protein; KEGG: dal:Dalk_1024 acetyl coenzyme A synthetase (ADP forming), alpha domain protein YP_002992637.1 KEGG: dvm:DvMF_0966 metal dependent phosphohydrolase YP_002992638.1 PFAM: acriflavin resistance protein; KEGG: dat:HRM2_02370 cobalt-zinc-cadmium resistance protein CzcA-like protein YP_002992639.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dat:HRM2_02380 membrane-fusion protein YP_002992640.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dat:HRM2_02390 outer membrane efflux protein YP_002992641.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sme:SM_b21561 two component response regulator protein YP_002992642.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: lpn:lpg1437 sensor histidine kinase CpxA YP_002992643.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dps:DP2914 hypothetical protein YP_002992644.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: pca:Pcar_1392 S-adenosylmethionine-dependent methyltransferase YP_002992645.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002992646.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002992647.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dvm:DvMF_1742 phosphoribosylanthranilate isomerase YP_002992648.1 PFAM: indole-3-glycerol phosphate synthase; KEGG: dvl:Dvul_2469 indole-3-glycerol-phosphate synthase YP_002992649.1 KEGG: dvm:DvMF_1744 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like YP_002992650.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: dvm:DvMF_1745 glutamine amidotransferase of anthranilate synthase YP_002992651.1 PFAM: Chorismate binding-like; anthranilate synthase component I domain protein; KEGG: dvm:DvMF_1746 anthranilate synthase YP_002992652.1 PFAM: prephenate dehydrogenase; KEGG: dds:Ddes_0334 prephenate dehydrogenase YP_002992653.1 KEGG: dvm:DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_002992654.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: dvm:DvMF_1749 prephenate dehydratase YP_002992655.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate YP_002992656.1 KEGG: dvl:Dvul_2477 fructose-bisphosphate aldolase; TIGRFAM: predicted phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_002992657.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dde:Dde_3492 ammonium transporter YP_002992658.1 PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_3493 nitrogen regulatory protein P-II YP_002992659.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: dvm:DvMF_1754 diguanylate phosphodiesterase YP_002992660.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: dvm:DvMF_2967 RarD protein, DMT superfamily transporter YP_002992661.1 KEGG: mms:mma_2307 sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_002992662.1 TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; KEGG: reu:Reut_A1791 aspartate ammonia-lyase YP_002992663.1 PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: dps:DP1361 tyrosine transporter YP_002992664.1 PFAM: penicillin-binding protein transpeptidase; KEGG: pap:PSPA7_6316 beta-lactamase PSE-2 (beta lactamase OXA-10) YP_002992665.1 KEGG: dol:Dole_1154 ankyrin repeat-containing protein YP_002992666.1 PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; KEGG: dvm:DvMF_2964 RNP-1 like RNA-binding protein YP_002992667.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: ppd:Ppro_0754 DEAD/DEAH box helicase domain-containing protein YP_002992668.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_002992669.1 PFAM: methyltransferase type 11; regulatory protein ArsR; methyltransferase type 12; SMART: regulatory protein ArsR; KEGG: dvl:Dvul_2348 methyltransferase type 11 YP_002992670.1 PFAM: protein of unknown function DUF721; KEGG: dvl:Dvul_2350 hypothetical protein YP_002992671.1 KEGG: dal:Dalk_0401 hypothetical protein YP_002992673.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dvl:Dvul_0075 LysR family transcriptional regulator YP_002992674.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvm:DvMF_0634 metal dependent phosphohydrolase YP_002992675.1 KEGG: dvl:Dvul_1908 hypothetical protein YP_002992676.1 KEGG: dvl:Dvul_0169 hypothetical protein YP_002992677.1 KEGG: tcx:Tcr_1766 hypothetical protein YP_002992678.1 PFAM: PhoU family protein; KEGG: tcx:Tcr_1767 hypothetical protein YP_002992679.1 PFAM: RimK domain protein ATP-grasp; KEGG: pin:Ping_2322 RimK domain-containing protein ATP-grasp YP_002992680.1 KEGG: pin:Ping_2321 HPr kinase YP_002992681.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: dde:Dde_3600 hypothetical protein YP_002992682.1 KEGG: dvu:DVU3217 hypothetical protein YP_002992683.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_1838 nitroreductase YP_002992684.1 KEGG: dvm:DvMF_2639 hypothetical protein YP_002992685.1 KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_002992686.1 KEGG: dde:Dde_0283 hypothetical protein YP_002992687.1 KEGG: sfu:Sfum_0659 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: xylose isomerase; SMART: AP endonuclease family 2 YP_002992688.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: dde:Dde_3600 hypothetical protein YP_002992689.1 PFAM: protein of unknown function UPF0227; KEGG: kpn:KPN_03445 esterase YqiA YP_002992690.1 PFAM: protein of unknown function DUF482; KEGG: pzu:PHZ_c1300 hypothetical protein YP_002992691.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dvl:Dvul_0075 LysR family transcriptional regulator YP_002992692.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: dal:Dalk_4352 nitrogen-fixing NifU domain protein YP_002992693.1 KEGG: dal:Dalk_4452 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_002992694.1 KEGG: pca:Pcar_1057 hypothetical protein YP_002992695.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: pst:PSPTO_4669 endonuclease/exonuclease/phosphatase family protein YP_002992697.1 KEGG: Pkd1l2; polycystic kidney disease 1 like 2 ; K04988 polycystin 1L2 YP_002992701.1 KEGG: dvl:Dvul_1412 hypothetical protein YP_002992702.1 PFAM: peptidase S24 and S26 domain protein; CI repressor; KEGG: dde:Dde_1980 transcriptional regulator YP_002992704.1 KEGG: dde:Dde_2598 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; Cold shock protein YP_002992705.1 KEGG: dvu:DVU2468 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_002992706.1 PFAM: protein of unknown function UPF0005; KEGG: dvm:DvMF_0927 protein of unknown function UPF0005 YP_002992707.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: cbd:CBUD_1525 di-/tripeptide transporter YP_002992708.1 KEGG: rso:RS05060 signal peptide protein YP_002992709.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: dde:Dde_2409 K+-dependent Na+/Ca+ exchanger related-protein YP_002992710.1 KEGG: dde:Dde_2372 hypothetical protein YP_002992711.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002992712.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002992713.1 TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: dvl:Dvul_0726 50S ribosomal protein L13 YP_002992714.1 forms a direct contact with the tRNA during translation YP_002992715.1 PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; KEGG: dde:Dde_3084 signal transduction protein YP_002992716.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: glo:Glov_0136 multi-sensor signal transduction histidine kinase YP_002992717.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1676 elongator protein 3/MiaB/NifB YP_002992718.1 KEGG: sat:SYN_00612 hypothetical protein YP_002992719.1 KEGG: aeh:Mlg_0868 hypothetical protein YP_002992720.1 PFAM: protein of unknown function UPF0061; KEGG: rlt:Rleg2_0857 protein of unknown function UPF0061 YP_002992721.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: hip:CGSHiEE_05405 Sel1 domain-containing protein YP_002992722.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002992724.1 PFAM: radical SAM domain protein; KEGG: dvl:Dvul_1670 radical SAM domain-containing protein YP_002992726.1 TIGRFAM: YD repeat protein; KEGG: sfu:Sfum_4063 NHL repeat containing protein YP_002992728.1 TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvl:Dvul_1198 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002992729.1 PFAM: beta-lactamase; KEGG: dal:Dalk_1093 serine-type D-Ala-D-Ala carboxypeptidase YP_002992731.1 PFAM: protein of unknown function DUF1291; KEGG: dat:HRM2_17470 hypothetical protein YP_002992732.1 PFAM: hypothetical protein; KEGG: dat:HRM2_33420 multidomain fusion protein (N:DNA-binding domain/C:signal transduction histidine kinase) YP_002992733.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: swp:swp_0619 regulatory protein, MarR YP_002992734.1 PFAM: protein of unknown function DUF161; KEGG: dde:Dde_2520 hypothetical protein YP_002992735.1 KEGG: dde:Dde_1001 hypothetical protein YP_002992736.1 KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; extracellular solute-binding protein family 3; PAS fold domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein YP_002992737.1 KEGG: dvl:Dvul_2233 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_002992738.1 PFAM: extracellular ligand-binding receptor; KEGG: dvu:DVU0738 substrate-binding protein YP_002992739.1 PFAM: hypothetical protein; KEGG: shm:Shewmr7_1158 hypothetical protein 341 YP_002992740.1 KEGG: dal:Dalk_5017 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_002992741.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: xcc:XCC0358 glycerol kinase YP_002992742.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: bid:Bind_0379 MIP family channel protein YP_002992743.1 PFAM: FAD dependent oxidoreductase; KEGG: dat:HRM2_22630 GlpA YP_002992744.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: bid:Bind_0377 DeoR family transcriptional regulator YP_002992745.1 PFAM: radical SAM domain protein; KEGG: dvu:DVUA0097 radical SAM domain-containing protein YP_002992746.1 KEGG: dde:Dde_1149 hypothetical protein YP_002992747.1 KEGG: dvm:DvMF_0659 hypothetical protein YP_002992749.1 PFAM: DSBA oxidoreductase; KEGG: dde:Dde_1263 hypothetical protein YP_002992750.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dat:HRM2_42800 GlpQ2 YP_002992751.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: mxa:MXAN_2881 alcohol dehydrogenase, iron-containing YP_002992752.1 PFAM: calcium-binding EF-hand-containing protein; SMART: calcium-binding EF-hand-containing protein; KEGG: dvm:DvMF_0796 calcium-binding EF-hand-containing protein YP_002992755.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: rpb:RPB_4524 phage integrase YP_002992756.1 PFAM: lycopene beta and epsilon cyclase; KEGG: mmw:Mmwyl1_3883 monooxygenase FAD-binding YP_002992759.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: psb:Psyr_3776 cytosine deaminase YP_002992760.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfu:Sfum_2013 major facilitator superfamily MFS_1 YP_002992761.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mlo:mll4618 hypothetical protein YP_002992762.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: dal:Dalk_4759 aspartate racemase YP_002992763.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: pag:PLES_33651 transporter YP_002992764.1 KEGG: pcr:Pcryo_1414 NadR-like protein YP_002992765.1 PFAM: extracellular solute-binding protein family 5; KEGG: rso:RSc0044 substrate-binding periplasmic (PBP) ABC transporter protein YP_002992766.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cti:RALTA_A2752 dipeptide transport protein 1 (ABC superfamily, membrane component) YP_002992767.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_3156 binding-protein-dependent transport systems inner membrane component YP_002992768.1 KEGG: reh:H16_A3295 ABC-type transporter ATPase component: PepT family; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002992769.1 KEGG: rso:RSc2866 oligopeptide ATP-binding ABC transporter protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_002992770.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sfu:Sfum_1907 transcriptional regulator, LysR family YP_002992771.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: dvm:DvMF_0510 C_GCAxxG_C_C family protein YP_002992772.1 KEGG: fph:Fphi_0456 hypothetical protein YP_002992773.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gur:Gura_0626 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_002992774.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; KEGG: mpo:Mpop_2964 molybdenum cofactor synthesis domain protein YP_002992775.1 KEGG: rpa:RPA3389 hypothetical protein YP_002992776.1 PFAM: PhoH family protein; SMART: nucleotide binding protein PINc; KEGG: dvu:DVU0442 PhoH-related protein YP_002992777.1 KEGG: dvm:DvMF_0001 chromosomal replication initiator protein DnaA YP_002992778.1 PFAM: chromosomal replication initiator DnaA; chromosomal replication initiator DnaA domain; SMART: chromosomal replication initiator DnaA domain; KEGG: dde:Dde_2320 DnaA family protein YP_002992779.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_002992780.1 TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: dde:Dde_1533 GTP-binding protein TypA YP_002992781.1 KEGG: dvm:DvMF_2640 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein YP_002992782.1 PFAM: asparaginase/glutaminase; KEGG: dps:DP0994 L-asparaginase YP_002992783.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pin:Ping_1917 PpiC-type peptidyl-prolyl cis-trans isomerase YP_002992784.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: dvu:DVU0415 cytosol aminopeptidase YP_002992785.1 PFAM: extracellular ligand-binding receptor; KEGG: bba:Bd3385 branched-chain amino acid ABC transporter amino acid-binding protein YP_002992786.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sfu:Sfum_1506 anti-sigma-factor antagonist YP_002992787.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0800 hypothetical protein YP_002992788.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: dvu:DVUA0086 response regulator YP_002992789.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: amc:MADE_01976 peptidyl-prolyl cis-trans isomerase B YP_002992790.1 PFAM: protein of unknown function DUF401; KEGG: dde:Dde_2515 hypothetical protein YP_002992791.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: gbm:Gbem_1114 hypothetical protein YP_002992792.1 PFAM: glycosyl transferase family 2; KEGG: geo:Geob_1481 glycosyl transferase family 2 YP_002992793.1 KEGG: dde:Dde_2314 hypothetical protein YP_002992794.1 PFAM: amidinotransferase; KEGG: yen:YE2045 hydrolase YP_002992796.1 KEGG: pzu:PHZ_c2091 methyltransferase type 11 YP_002992797.1 TIGRFAM: cobalt ABC transporter inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dvl:Dvul_1937 cobalt ABC transporter inner membrane subunit CbiQ YP_002992798.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dal:Dalk_2006 ABC transporter YP_002992799.1 KEGG: vfm:VFMJ11_A1174 lipoprotein YP_002992800.1 KEGG: dde:Dde_0206 hypothetical protein YP_002992801.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: sfu:Sfum_1838 RNA binding S1 domain protein YP_002992802.1 KEGG: geo:Geob_2549 hypothetical protein YP_002992804.1 KEGG: rpd:RPD_2001 cytochrome c-type biogenesis protein CycH YP_002992805.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: dvl:Dvul_2931 GntR family transcriptional regulator YP_002992806.1 PFAM: AzlC family protein; KEGG: dvm:DvMF_2174 AzlC family protein YP_002992807.1 PFAM: branched-chain amino acid ABC transporter; KEGG: dde:Dde_0159 hypothetical protein YP_002992808.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1591 hypothetical protein YP_002992809.1 PFAM: hydantoinase B/oxoprolinase; KEGG: pca:Pcar_3104 N-methylhydantoinase B/acetone carboxylase, alpha subunit YP_002992810.1 PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: pca:Pcar_3103 N-methylhydantoinase A/acetone carboxylase, beta subunit YP_002992811.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dat:HRM2_46640 TRAP-type C4-dicarboxylate transport system periplasmic component YP_002992812.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dat:HRM2_46650 TRAP-type C4-dicarboxylate transport system, small permease component YP_002992813.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dat:HRM2_46660 TRAP C4-dicarboxylate transport system permease DctM subunit YP_002992814.1 PFAM: xylose isomerase; KEGG: dvm:DvMF_2599 xylose isomerase domain protein TIM barrel YP_002992815.1 PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: dol:Dole_2202 hypothetical protein YP_002992816.1 KEGG: dde:Dde_3014 hypothetical protein YP_002992817.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dde:Dde_3013 ErfK/YbiS/YcfS/YnhG family protein YP_002992818.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: dde:Dde_3011 adenylosuccinate lyase YP_002992819.1 TIGRFAM: regulatory protein, FmdB family; KEGG: dde:Dde_3010 hypothetical protein YP_002992820.1 KEGG: dds:Ddes_0093 hypothetical protein YP_002992821.1 KEGG: dvm:DvMF_2111 hypothetical protein YP_002992822.1 PFAM: NLP/P60 protein; KEGG: dvl:Dvul_0199 NLP/P60 protein YP_002992823.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dvm:DvMF_1518 NADH dehydrogenase (quinone) YP_002992824.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dvl:Dvul_2502 respiratory-chain NADH dehydrogenase, subunit 1 YP_002992825.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dvl:Dvul_2503 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_002992826.1 KEGG: dvm:DvMF_1521 hypothetical protein YP_002992827.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: dvm:DvMF_1522 NADH-ubiquinone oxidoreductase chain 49kDa YP_002992828.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_2506 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_002992829.1 PFAM: protein of unknown function DUF214; KEGG: sat:SYN_00854 export ABC transporter permease protein YP_002992830.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfr:Sfri_1813 ABC transporter YP_002992831.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rlt:Rleg2_1706 efflux transporter RND family, MFP subunit YP_002992832.1 SMART: helix-turn-helix domain protein; KEGG: lpc:LPC_3184 transcriptional regulator YP_002992833.1 KEGG: dal:Dalk_4885 hypothetical protein YP_002992834.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: dde:Dde_0120 ribosomal large subunit pseudouridine synthase C YP_002992835.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dde:Dde_0636 TRAP dicarboxylate transporter-DctM subunit YP_002992836.1 KEGG: dde:Dde_0635 tripartite ATP-independent periplasmic transporters, DctQ component YP_002992837.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_0634 extracellular solute-binding protein YP_002992838.1 KEGG: dvm:DvMF_2025 hypothetical protein YP_002992839.1 PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein YP_002992840.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: dde:Dde_3502 fructose-bisphosphate aldolase YP_002992841.1 PFAM: adenylate cyclase; KEGG: similar to F35D11.4 YP_002992842.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: vfi:VF_1211 hypothetical protein YP_002992843.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRB1303 hypothetical protein YP_002992844.1 KEGG: dvm:DvMF_0922 hypothetical protein YP_002992845.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vvu:VV1_2193 hypothetical protein YP_002992846.1 PFAM: glutamine amidotransferase class-I; KEGG: xau:Xaut_4097 glutamine amidotransferase class-I YP_002992847.1 PFAM: N-acetyltransferase; KEGG: vpa:VPA0072 N-hydroxyarylamine O-acetyltransferase YP_002992848.1 KEGG: sfu:Sfum_2627 hypothetical protein YP_002992849.1 PFAM: methyltransferase type 11; methyltransferase type 12; methyltransferase; KEGG: dat:HRM2_40940 UbiE5 YP_002992850.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: gur:Gura_0278 histidine kinase YP_002992851.1 KEGG: noc:Noc_1472 hypothetical protein YP_002992852.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: dps:DP0884 two-component system response regulator YP_002992853.1 KEGG: dps:DP2292 two-component system sensory/regulatory protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein YP_002992855.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: nis:NIS_0865 alkylphosphonate uptake protein PhnA YP_002992856.1 PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dde:Dde_3295 methyl-accepting chemotaxis sensory transducer YP_002992857.1 PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dde:Dde_3295 methyl-accepting chemotaxis sensory transducer YP_002992858.1 PFAM: aldo/keto reductase; KEGG: aci:ACIAD3281 2,5-diketo-D-gluconate reductase YP_002992859.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: dde:Dde_3099 methylated-DNA--protein-cysteine methyltransferase YP_002992861.1 PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dvl:Dvul_0479 AraC family transcriptional regulator YP_002992862.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gur:Gura_1324 hemerythrin-like metal-binding protein YP_002992863.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dvm:DvMF_1316 protein of unknown function DUF6 transmembrane YP_002992864.1 PFAM: basic membrane lipoprotein; KEGG: bba:Bd0445 ABC-type transport system substrate-binding protein YP_002992865.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sat:SYN_00226 signal transduction histidine kinase YP_002992866.1 PFAM: hypothetical protein; KEGG: pmy:Pmen_4228 hypothetical protein YP_002992867.1 PFAM: pseudouridine synthase; KEGG: dps:DP3109 ribosomal large subunit pseudouridine synthase A YP_002992868.1 PFAM: glutamate synthase alpha subunit domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dvm:DvMF_2389 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002992869.1 PFAM: ferredoxin-dependent glutamate synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2388 ferredoxin-dependent glutamate synthase YP_002992870.1 KEGG: dvm:DvMF_2387 glutamate synthase (NADPH) YP_002992872.1 PFAM: regulatory protein TetR; KEGG: dol:Dole_0167 TetR family transcriptional regulator YP_002992873.1 KEGG: dvl:Dvul_2450 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002992874.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002992875.1 KEGG: dps:DP3108 hypothetical protein YP_002992876.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pfo:Pfl01_4226 hypothetical protein YP_002992877.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dde:Dde_2687 PAS/PAC sensor signal transduction histidine kinase YP_002992878.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: sun:SUN_0864 PAP2 family phosphoesterase YP_002992879.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cvi:CV_0434 acriflavin resistance protein D YP_002992880.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfu:Sfum_1458 efflux transporter RND family, MFP subunit YP_002992882.1 KEGG: hch:HCH_06018 response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_002992883.1 PFAM: DGC domain protein; KEGG: sfu:Sfum_3599 hypothetical protein YP_002992884.1 PFAM: permease; KEGG: dde:Dde_2777 permease-like YP_002992885.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: dvm:DvMF_2281 transcriptional regulator, ArsR family YP_002992886.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_002992887.1 TIGRFAM: hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: dvm:DvMF_0512 conserved integral membrane protein YP_002992888.1 KEGG: dde:Dde_3311 ABC-type sugar transport system, periplasmic component YP_002992889.1 KEGG: dvl:Dvul_2248 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_002992890.1 KEGG: dal:Dalk_0545 response regulator receiver modulated diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver YP_002992891.1 KEGG: dat:HRM2_43550 two-component system sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; Hpt domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; extracellular solute-binding protein family 3; response regulator receiver; PAS domain containing protein YP_002992892.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_1553 L-alanine dehydrogenase YP_002992893.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dps:DP1286 sodium/alanine symporter YP_002992894.1 KEGG: dde:Dde_1547 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_002992895.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_45420 PotC1 YP_002992896.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_45430 PotB1 YP_002992897.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: dat:HRM2_45440 PotA1 YP_002992898.1 PFAM: extracellular solute-binding protein family 1; KEGG: dat:HRM2_45450 PotD YP_002992900.1 PFAM: sodium:neurotransmitter symporter; KEGG: dat:HRM2_44940 Na+-dependent transporter YP_002992901.1 PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: metal-dependent phosphohydrolase HD region; response regulator receiver; KEGG: dde:Dde_3114 metal dependent phosphohydrolase YP_002992902.1 KEGG: dvl:Dvul_2248 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; Cache type 2 domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_002992903.1 PFAM: sulfate transporter; Sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; KEGG: dps:DP0967 sulfate permease (SulP) YP_002992904.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pin:Ping_1907 GCN5-related N-acetyltransferase YP_002992905.1 KEGG: dde:Dde_0189 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM domain protein YP_002992906.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_3744 ATPase YP_002992907.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3743 amino acid ABC transporter permease YP_002992908.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_3742 extracellular solute-binding protein YP_002992909.1 KEGG: dde:Dde_3740 LuxR family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold domain protein; SMART: regulatory protein LuxR; PAS domain containing protein YP_002992910.1 PFAM: protein of unknown function DUF554; KEGG: dvl:Dvul_1184 hypothetical protein YP_002992911.1 PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; KEGG: dal:Dalk_1872 protein serine/threonine phosphatase YP_002992912.1 KEGG: dps:DP1626 hypothetical protein YP_002992913.1 PFAM: hypothetical protein; KEGG: rfr:Rfer_3142 hypothetical protein YP_002992914.1 KEGG: aha:AHA_0488 HD-GYP domain-containing protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002992915.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sat:SYN_01373 hydrogenase transcriptional regulatory protein YP_002992916.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: ret:RHE_CH03852 ornithine--oxo-acid transaminase YP_002992917.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: pat:Patl_3543 Hpt sensor hybrid histidine kinase YP_002992918.1 KEGG: dvl:Dvul_0098 hypothetical protein YP_002992919.1 PFAM: protein of unknown function UPF0047; KEGG: bra:BRADO6457 hypothetical protein YP_002992921.1 KEGG: cak:Caul_0720 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein YP_002992922.1 PFAM: Domain of unkown function DUF1786 pyruvate format-lyase activating enzyme; KEGG: dvl:Dvul_0572 hypothetical protein YP_002992923.1 PFAM: PGAP1 family protein; KEGG: dvm:DvMF_0506 PGAP1 family protein YP_002992924.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dat:HRM2_36540 signal transduction protein YP_002992925.1 KEGG: dvl:Dvul_2679 chemotaxis protein CheX YP_002992926.1 PFAM: Na+ dependent nucleoside transporter domain protein; nucleoside recognition domain protein; Na+ dependent nucleoside transporter; KEGG: dol:Dole_2117 Na+ dependent nucleoside transporter YP_002992927.1 PFAM: chloride channel core; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: dat:HRM2_16400 EriC1 YP_002992929.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dvm:DvMF_0966 metal dependent phosphohydrolase YP_002992930.1 PFAM: auxin efflux carrier; KEGG: sfr:Sfri_1044 auxin efflux carrier YP_002992932.1 PFAM: pentapeptide repeat protein; KEGG: dps:DP2447 McbG protein YP_002992933.1 PFAM: sodium/sulfate symporter; citrate transporter; KEGG: shn:Shewana3_0451 anion transporter YP_002992934.1 KEGG: dvl:Dvul_1715 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_002992935.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dvm:DvMF_0129 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_002992936.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002992937.1 KEGG: dde:Dde_1722 anti-sigma regulatory factor (serine/threonine protein kinase) YP_002992938.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA YP_002992939.1 PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein YP_002992940.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1717 chemotaxis protein PomA YP_002992941.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1716 chemotaxis protein PomB YP_002992942.1 KEGG: dde:Dde_1715 CgeB family protein YP_002992943.1 TIGRFAM: regulatory protein, FmdB family; KEGG: dal:Dalk_0219 regulatory protein, FmdB family YP_002992944.1 PFAM: ATP-binding region ATPase domain protein; CHASE4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_0077 histidine kinase YP_002992945.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002992946.1 KEGG: mrd:Mrad2831_2771 hypothetical protein YP_002992947.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: dde:Dde_1726 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_002992948.1 PFAM: protein of unknown function DUF164; KEGG: dde:Dde_1728 hypothetical protein YP_002992949.1 PFAM: protein of unknown function DUF34; KEGG: dds:Ddes_1250 protein of unknown function DUF34 YP_002992950.1 TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: dde:Dde_3605 bifunctional ADP-heptose synthase YP_002992951.1 PFAM: abortive infection protein; KEGG: dal:Dalk_0566 abortive infection protein YP_002992952.1 PFAM: protein of unknown function UPF0153; KEGG: dvl:Dvul_2824 hypothetical protein YP_002992953.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1487 glycosyl transferase, group 2 family protein YP_002992954.1 KEGG: dps:DP0447 hypothetical protein YP_002992955.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dde:Dde_0349 LysR family transcriptional regulator YP_002992956.1 PFAM: glycosyl transferase group 1; polysaccharide deacetylase; KEGG: sbc:SbBS512_A0260 polysaccharide deacetylase family protein YP_002992957.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dvu:DVU0751 His/Glu/Gln/Arg/opine ABC transporter permease YP_002992958.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_2764 extracellular solute-binding protein YP_002992959.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dvl:Dvul_2217 ABC transporter YP_002992960.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_1405 two component Fis family transcriptional regulator YP_002992961.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: oan:Oant_1465 ABC transporter YP_002992962.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll3625 ABC ABC transporter permease YP_002992963.1 PFAM: extracellular solute-binding protein family 1; KEGG: rhi:NGR_c19550 solute-binding component of ABC transporter YP_002992964.1 PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: dvm:DvMF_1869 methyl-accepting chemotaxis sensory transducer with cache sensor YP_002992965.1 KEGG: dvm:DvMF_2224 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like YP_002992967.1 PFAM: CinA domain protein; KEGG: ajs:Ajs_0354 CinA domain-containing protein YP_002992968.1 TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: dal:Dalk_2946 2'-5' RNA ligase YP_002992969.1 KEGG: dvm:DvMF_2121 2-alkenal reductase; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_002992970.1 PFAM: peptidase M48 Ste24p; KEGG: dvu:DVU2494 M48 family peptidase YP_002992971.1 KEGG: dde:Dde_3113 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; Cache type 2 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein YP_002992972.1 PFAM: hemolysin-type calcium-binding region; KEGG: sme:SM_b20079 hemolysin-adenlyate cyclase protein YP_002992975.1 PFAM: TPR repeat-containing protein; hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein YP_002992976.1 PFAM: beta-lactamase domain protein; KEGG: sfu:Sfum_1656 beta-lactamase domain protein YP_002992977.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: dde:Dde_0508 signal peptide peptidase A YP_002992978.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002992979.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: sfu:Sfum_2904 phosphate uptake regulator, PhoU YP_002992980.1 KEGG: dde:Dde_2386 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter ATPase subunit; PFAM: ABC transporter; SMC domain protein; SMART: ATPase AAA YP_002992981.1 KEGG: dal:Dalk_1609 hypothetical protein YP_002992982.1 PFAM: Domain of unknown function DUF1791; KEGG: dvm:DvMF_3197 domain of unknown function DUF1791 YP_002992983.1 KEGG: sfu:Sfum_3196 hypothetical protein YP_002992984.1 KEGG: dvm:DvMF_3168 hypothetical protein YP_002992985.1 KEGG: dde:Dde_3088 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_002992986.1 PFAM: ROSMUCR transcriptional regulator; KEGG: dvl:Dvul_0717 MucR family transcriptional regulator YP_002992987.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1716 chemotaxis protein PomB YP_002992988.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvm:DvMF_0063 response regulator receiver protein YP_002992989.1 KEGG: dal:Dalk_5017 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002992990.1 KEGG: nmu:Nmul_A1155 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein YP_002992991.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dat:HRM2_02500 two-component response regulator receiver protein (phosphoserine phosphatase) YP_002992992.1 PFAM: rhodanese domain protein; SMART: rhodanese domain protein; KEGG: dal:Dalk_4013 rhodanese domain protein YP_002992993.1 PFAM: DoxX family protein; KEGG: dal:Dalk_4014 DoxX family protein YP_002992994.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dvm:DvMF_2252 DEAD/DEAH box helicase domain protein YP_002992995.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002992996.1 KEGG: dal:Dalk_2333 transcriptional regulator, TetR family YP_002992997.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: sfu:Sfum_2781 C_GCAxxG_C_C family protein YP_002992998.1 KEGG: dvl:Dvul_2897 hypothetical protein YP_002992999.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dat:HRM2_03410 ColS YP_002993000.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: dat:HRM2_03400 ColR YP_002993001.1 PFAM: major facilitator superfamily MFS_1; KEGG: dat:HRM2_32890 permease of the major facilitator superfamily YP_002993002.1 PFAM: protein of unknown function DUF45; KEGG: sfu:Sfum_1535 protein of unknown function DUF45 YP_002993003.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sat:SYN_02356 anti-sigma F factor antagonist YP_002993004.1 PFAM: DSBA oxidoreductase; KEGG: bba:Bd0789 disulfide interchange protein YP_002993005.1 PFAM: CheD family protein; KEGG: gbm:Gbem_1596 CheD, stimulates methylation of MCP proteins YP_002993006.1 KEGG: pca:Pcar_2457 alpha-acetolactate decarboxylase; TIGRFAM: alpha-acetolactate decarboxylase; PFAM: alpha-acetolactate decarboxylase YP_002993007.1 PFAM: Hpt domain protein; KEGG: sat:SYN_00227 cytoplasmic protein YP_002993008.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; KEGG: dde:Dde_2486 excinuclease ABC subunit A YP_002993009.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mxa:MXAN_2061 HAMP domain/HD domain-containing protein YP_002993010.1 PFAM: ATPase; KEGG: gur:Gura_0746 hypothetical protein YP_002993011.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002993013.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002993014.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_002993015.1 KEGG: dde:Dde_0126 MerR family transcriptional regulator YP_002993016.1 molecular chaperone YP_002993017.1 PFAM: Hpt domain protein; KEGG: rdeA; Hpt domain-containing protein YP_002993018.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dal:Dalk_0899 response regulator receiver protein YP_002993019.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dvm:DvMF_1489 lysine exporter protein (LysE/YggA) YP_002993020.1 KEGG: dvl:Dvul_2454 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_002993021.1 KEGG: dde:Dde_3458 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201 YP_002993022.1 PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: dvm:DvMF_0360 methyl-accepting chemotaxis sensory transducer YP_002993023.1 KEGG: dvu:DVU1233 protein-P-II uridylyltransferase, PFAM: GlnD PII-uridylyltransferase; DNA polymerase beta domain protein region; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_002993024.1 PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_2310 nitrogen regulatory protein P-II (GlnB, GlnK) YP_002993025.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dvm:DvMF_0866 ammonium transporter YP_002993026.1 PFAM: periplasmic solute binding protein; KEGG: dvl:Dvul_1725 periplasmic solute binding protein YP_002993028.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sfu:Sfum_2772 transcriptional regulator, NifA subfamily, fis family YP_002993029.1 PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: dvl:Dvul_1002 hydantoinase/oxoprolinase YP_002993030.1 PFAM: histone deacetylase superfamily; KEGG: dde:Dde_2337 histone deacetylase family protein YP_002993031.1 KEGG: dvm:DvMF_0563 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; SMART: chemotaxis sensory transducer YP_002993032.1 TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dvu:DVU0973 4-hydroxybenzoate octaprenyltransferase YP_002993033.1 PFAM: protein of unknown function DUF606; KEGG: dde:Dde_0252 hypothetical protein YP_002993034.1 KEGG: ses:SARI_01533 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein YP_002993035.1 PFAM: metallophosphoesterase; KEGG: geo:Geob_3589 metallophosphoesterase YP_002993036.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_002993037.1 KEGG: dvm:DvMF_1183 hypothetical protein YP_002993039.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002993040.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_002993041.1 KEGG: dvl:Dvul_2195 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: ATPase AAA YP_002993042.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit YP_002993043.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002993044.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002993045.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvm:DvMF_2827 H+transporting two-sector ATPase B/B' subunit YP_002993046.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dvm:DvMF_2826 H+transporting two-sector ATPase B/B' subunit YP_002993047.1 PFAM: protein of unknown function DUF583; KEGG: dvm:DvMF_2825 protein of unknown function DUF583 YP_002993048.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dde:Dde_0992 rod shape-determining protein RodA YP_002993049.1 KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_002993050.1 KEGG: dvm:DvMF_2822 hypothetical protein YP_002993051.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: dvl:Dvul_2185 rod shape-determining protein MreC YP_002993052.1 functions in MreBCD complex in some organisms YP_002993053.1 KEGG: dde:Dde_0997 hypothetical protein; TIGRFAM: hypothetical protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002993054.1 KEGG: dde:Dde_0867 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein YP_002993055.1 PFAM: glycosyl transferase group 1; KEGG: mno:Mnod_5881 glycosyl transferase group 1 YP_002993056.1 KEGG: pag:PLES_14931 GDP-mannose 6-dehydrogenase AlgD; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_002993057.1 PFAM: heparinase II/III family protein; KEGG: pin:Ping_0433 heparinase II/III family protein YP_002993058.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1060 phosphate ABC transporter permease YP_002993059.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_2887 phosphate ABC transporter inner membrane subunit PstC YP_002993060.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: dvl:Dvul_0765 phosphate binding protein YP_002993061.1 KEGG: dvu:DVU0295 amine oxidase, flavin-containing YP_002993062.1 PFAM: peptidase M24; creatinase; KEGG: dvm:DvMF_1929 peptidase M24 YP_002993063.1 KEGG: dde:Dde_0181 hypothetical protein YP_002993064.1 PFAM: regulatory protein TetR; KEGG: dol:Dole_0167 TetR family transcriptional regulator YP_002993065.1 KEGG: dvm:DvMF_2990 isoprenylcysteine carboxyl methyltransferase YP_002993066.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: glo:Glov_0114 methyltransferase type 11 YP_002993067.1 KEGG: dvl:Dvul_2256 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_002993068.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: geo:Geob_2307 hemerythrin-like metal-binding protein YP_002993069.1 TIGRFAM: cobyric acid synthase CobQ; L-threonine-O-3-phosphate decarboxylase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; aminotransferase class I and II; cobyrinic acid ac-diamide synthase; KEGG: pca:Pcar_0484 cobyric acid synthase YP_002993070.1 PFAM: cupin; KEGG: hch:HCH_04426 mannose-6-phosphate isomerase YP_002993072.1 PFAM: radical SAM domain protein; KEGG: dvu:DVU3003 radical SAM domain-containing protein YP_002993073.1 SMART: hypothetical protein; KEGG: hypothetical protein YP_002993074.1 KEGG: dde:Dde_1360 GAF sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein YP_002993075.1 PFAM: KAP P-loop domain protein; KEGG: plu:plu1827 hypothetical protein YP_002993076.1 KEGG: dvm:DvMF_2718 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_002993077.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002993079.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dvm:DvMF_0937 ferredoxin-NADP(+) reductase subunit alpha YP_002993080.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_002993081.1 PFAM: protein of unknown function DUF1063; KEGG: dde:Dde_0807 hypothetical protein YP_002993082.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: dde:Dde_0809 endoribonuclease L-PSP YP_002993083.1 PFAM: YheO domain protein; KEGG: dde:Dde_0810 hypothetical protein YP_002993085.1 KEGG: sfu:Sfum_2650 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein YP_002993086.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psa:PST_2705 probable acetyltransferase YP_002993087.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dvl:Dvul_0185 TatD family hydrolase YP_002993088.1 KEGG: dde:Dde_0075 hypothetical protein YP_002993089.1 KEGG: dde:Dde_0318 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: ATPase AAA YP_002993090.1 KEGG: dvl:Dvul_0409 hypothetical protein YP_002993091.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dol:Dole_2331 response regulator receiver protein YP_002993092.1 PFAM: CBS domain containing protein; KEGG: dde:Dde_0325 hypothetical protein YP_002993093.1 PFAM: sodium/sulfate symporter; citrate transporter; KEGG: dde:Dde_0326 transmembrane transport proteins-like YP_002993094.1 KEGG: dal:Dalk_5167 hexapaptide repeat-containing transferase YP_002993095.1 involved in regulation of intracellular pH under alkaline conditions YP_002993096.1 PFAM: chemotaxis sensory transducer; Cache domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: dvm:DvMF_0127 methyl-accepting chemotaxis sensory transducer YP_002993097.1 PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: dvm:DvMF_0563 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor YP_002993098.1 KEGG: dvm:DvMF_1472 hypothetical protein YP_002993099.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002993100.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: dvu:DVU0645 methyl-accepting chemotaxis protein YP_002993101.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dde:Dde_2977 MarR family transcriptional regulator YP_002993102.1 KEGG: dde:Dde_2976 hypothetical protein YP_002993103.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dde:Dde_0414 hypothetical protein YP_002993104.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dat:HRM2_47280 CbiO4 YP_002993105.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dat:HRM2_47270 CbiO3 YP_002993106.1 PFAM: cobalt transport protein; KEGG: dat:HRM2_47260 CbiQ3 YP_002993107.1 KEGG: dat:HRM2_47250 hypothetical protein YP_002993108.1 PFAM: protein of unknown function DUF296; KEGG: dat:HRM2_47240 DNA-binding protein YP_002993109.1 PFAM: amino acid permease-associated region; KEGG: dvl:Dvul_0974 amino acid permease-associated region YP_002993110.1 KEGG: dvl:Dvul_0976 hypothetical protein YP_002993111.1 PFAM: protein of unknown function DUF81; KEGG: dvu:DVU2276 hypothetical protein YP_002993112.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: dvl:Dvul_0978 sigma-54 dependent trancsriptional regulator YP_002993113.1 PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; KEGG: dvu:DVU2272 formate acetyltransferase YP_002993114.1 KEGG: dvu:DVU2271 pyruvate formate-lyase activating enzyme, TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: radical SAM domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002993115.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: dvu:DVU2753 C_GCAxxG_C_C family protein YP_002993116.1 KEGG: dvl:Dvul_0981 hypothetical protein YP_002993117.1 KEGG: dde:Dde_0689 hypothetical protein YP_002993118.1 KEGG: glo:Glov_0749 outer membrane efflux protein YP_002993119.1 KEGG: glo:Glov_0748 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002993120.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: glo:Glov_0747 ABC transporter YP_002993121.1 PFAM: protein of unknown function DUF214; KEGG: glo:Glov_0746 protein of unknown function DUF214 YP_002993122.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sfu:Sfum_1627 MscS mechanosensitive ion channel YP_002993123.1 PFAM: protein of unknown function DUF161; KEGG: dvl:Dvul_0531 hypothetical protein YP_002993124.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dat:HRM2_23520 hypothetical protein YP_002993125.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-3 domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dds:Ddes_2345 sigma54 specific transcriptional regulator, fis family YP_002993127.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pca:Pcar_0941 hypothetical protein YP_002993128.1 KEGG: dds:Ddes_2344 hypothetical protein YP_002993129.1 KEGG: dds:Ddes_2346 hypothetical protein YP_002993133.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dds:Ddes_2343 type I phosphodiesterase/nucleotide pyrophosphatase YP_002993134.1 PFAM: BCCT transporter; KEGG: dds:Ddes_2342 BCCT transporter YP_002993135.1 PFAM: amino acid permease-associated region; KEGG: lip:LI0262 amino acid transporters YP_002993136.1 KEGG: vsa:VSAL_I1197 glutamate decarboxylase beta; TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase YP_002993137.1 PFAM: extracellular solute-binding protein family 1; KEGG: dps:DP1396 iron(III) ABC transporter periplasmic binding protein [precursor] YP_002993138.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A0731 binding-protein dependent transport system inner membrane protein YP_002993139.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: cti:RALTA_A0750 iron(III)-transport system ATP-binding protein YP_002993140.1 PFAM: protein of unknown function DUF169; KEGG: dde:Dde_2491 hypothetical protein YP_002993141.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dde:Dde_2490 LysR family transcriptional regulator YP_002993142.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dat:HRM2_28260 hypothetical protein YP_002993143.1 PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dde:Dde_3137 AraC family transcriptional regulator YP_002993144.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: gbm:Gbem_0781 iron-containing alcohol dehydrogenase YP_002993145.1 KEGG: dde:Dde_3138 membrane protein YP_002993146.1 PFAM: major facilitator superfamily MFS_1; KEGG: ent:Ent638_2353 major facilitator transporter YP_002993148.1 PFAM: carboxymuconolactone decarboxylase; KEGG: pca:Pcar_1079 carboxymuconolactone decarboxylase family protein YP_002993149.1 PFAM: cupin; KEGG: asu:Asuc_1308 carboxymuconolactone decarboxylase YP_002993150.1 KEGG: dde:Dde_3142 hypothetical protein YP_002993151.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: dvm:DvMF_1706 glucosamine/fructose-6-phosphate aminotransferase, isomerizing YP_002993152.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002993153.1 KEGG: dvm:DvMF_1700 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_002993154.1 KEGG: dvl:Dvul_0234 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002993156.1 PFAM: sporulation domain protein; KEGG: gsu:GSU1811 hypothetical protein YP_002993157.1 PFAM: glycosyl transferase family 9; KEGG: dvl:Dvul_1939 glycosyl transferase family protein YP_002993158.1 PFAM: protein of unknown function DUF202; KEGG: sfu:Sfum_2754 protein of unknown function DUF202 YP_002993159.1 KEGG: dvm:DvMF_2255 hypothetical protein YP_002993160.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_002993161.1 KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_002993162.1 KEGG: dat:HRM2_42590 AhpF YP_002993164.1 KEGG: dvm:DvMF_1577 hypothetical protein YP_002993165.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dvm:DvMF_1937 response regulator receiver protein YP_002993166.1 KEGG: dvm:DvMF_2256 transcriptional regulator, MucR family YP_002993167.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein YP_002993168.1 TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: dvm:DvMF_1396 flagellar motor switch protein FliM YP_002993169.1 PFAM: glycosyl transferase family 2; KEGG: lip:LI0381 cell wall biosynthesis glycosyltransferase YP_002993170.1 PFAM: WxcM domain protein; KEGG: gur:Gura_3191 WxcM domain-containing protein YP_002993171.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class V; KEGG: gme:Gmet_1325 DegT/DnrJ/EryC1/StrS aminotransferase YP_002993172.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: dde:Dde_1218 hypothetical protein YP_002993173.1 PFAM: rRNA methylase; KEGG: dvm:DvMF_2114 rRNA methylase YP_002993177.1 KEGG: geo:Geob_0889 general secretion pathway protein K YP_002993180.1 KEGG: dat:HRM2_11390 general secretion pathway protein YP_002993181.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: gbm:Gbem_0592 general secretion pathway protein G YP_002993183.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: ret:RHE_PE00175 two-component sensor histidine kinase protein YP_002993184.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: aph:APH_0196 nitrogen assimilation regulatory protein YP_002993185.1 KEGG: mxa:MXAN_2515 general secretion pathway protein C YP_002993186.1 PFAM: type II secretion system protein; KEGG: gur:Gura_0681 general secretion pathway protein F YP_002993187.1 KEGG: dvu:DVU0160 carbohydrate isomerase KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; SMART: CBS domain containing protein YP_002993188.1 KEGG: noc:Noc_2478 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_002993189.1 PFAM: metallophosphoesterase; KEGG: pen:PSEEN0255 phosphatase YP_002993190.1 KEGG: pen:PSEEN0256 carbamoyl-phosphate synthase L chain, ATP-binding YP_002993191.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: pen:PSEEN0257 epimerase YP_002993192.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: pen:PSEEN0258 SAM-dependent methyltransferase YP_002993193.1 PFAM: WbqC-like family protein; KEGG: rme:Rmet_5237 WbnG YP_002993194.1 PFAM: glycosyl transferase family 2; KEGG: geo:Geob_0317 glycosyl transferase family 2 YP_002993195.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: pfo:Pfl01_4046 DegT/DnrJ/EryC1/StrS aminotransferase YP_002993196.1 PFAM: oxidoreductase domain protein; KEGG: gur:Gura_4277 oxidoreductase domain-containing protein YP_002993197.1 PFAM: NDP-hexose 23-dehydratase; KEGG: gur:Gura_4278 NDP-hexose 2,3-dehydratase YP_002993198.1 KEGG: Os02g0138900; hypothetical protein YP_002993199.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0362 sugar transferase involved in lipopolysaccharide synthesis-like YP_002993200.1 PFAM: sugar transferase; KEGG: dde:Dde_0362 sugar transferase involved in lipopolysaccharide synthesis-like YP_002993201.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: gur:Gura_1700 serine acetyltransferase-like protein YP_002993202.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: abu:Abu_1807 acetyltransferase YP_002993204.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dde:Dde_0361 aminotransferase-like YP_002993205.1 PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0360 lipopolysaccharide biosynthesis protein (WbpM)-like YP_002993206.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: sun:SUN_1534 alginate O-acetyltransferase YP_002993207.1 SMART: ankyrin; KEGG: sun:SUN_1533 hypothetical protein YP_002993208.1 PFAM: polysaccharide deacetylase; KEGG: pat:Patl_1172 polysaccharide deacetylase YP_002993209.1 KEGG: dde:Dde_3684 hypothetical protein YP_002993210.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sat:SYN_02671 pleiotrophic regulatory protein YP_002993211.1 PFAM: glycosyl transferase group 1; KEGG: nmu:Nmul_A1795 phosphoheptose isomerase YP_002993212.1 KEGG: mms:mma_2263 hypothetical protein YP_002993213.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: scl:sce1037 NDP-sugar oxidoreductase YP_002993214.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: wsu:WS0052 hypothetical protein YP_002993215.1 PFAM: polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: abu:Abu_2243 UDP GlcNAc dehydratase/reductase PseB YP_002993216.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: dat:HRM2_36720 ArnB YP_002993217.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: dat:HRM2_36850 NeuA YP_002993218.1 PFAM: glycosyltransferase 28 domain; KEGG: dat:HRM2_36730 MurG2 YP_002993219.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: cps:CPS_2097 NeuB protein YP_002993220.1 KEGG: azc:AZC_1890 dTDP-6-deoxy-L-hexose 3-O-methyltransferase YP_002993221.1 PFAM: protein of unknown function DUF201; KEGG: msu:MS1491 carbamoyl phosphate synthase large subunit YP_002993222.1 KEGG: asu:Asuc_0100 HAD family hydrolase YP_002993223.1 KEGG: abc:ACICU_00082 hypothetical protein YP_002993224.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_2906 Fis family transcriptional regulator YP_002993225.1 PFAM: integrase catalytic region; KEGG: kpe:KPK_A0016 IS3 family element, transposase orfB YP_002993226.1 PFAM: methyltransferase type 11; KEGG: nam:NAMH_1782 SAM-dependent methyltransferase, UbiE/COQ5 family YP_002993227.1 KEGG: sat:SYN_01477 pentaglycine interpeptide bridge formation protein YP_002993228.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rpt:Rpal_4502 oxidoreductase domain protein YP_002993229.1 PFAM: acyltransferase 3; KEGG: lpf:lpl0821 hypothetical protein YP_002993230.1 KEGG: GK12566 gene product from transcript GK12566-RA YP_002993231.1 KEGG: dvm:DvMF_0846 hypothetical protein YP_002993232.1 PFAM: type II secretion system protein E; SMART: ATPase AAA; KEGG: rso:RSc3115 general secretion pathway protein E YP_002993233.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: dal:Dalk_5145 general secretion pathway protein D YP_002993234.1 PFAM: abortive infection protein; KEGG: tgr:Tgr7_0273 abortive infection protein YP_002993235.1 PFAM: glycosyl transferase family 9; KEGG: dvm:DvMF_3035 glycosyl transferase family 9 YP_002993236.1 KEGG: dvm:DvMF_2797 hypothetical protein YP_002993237.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: pst:PSPTO_1916 3-oxoacyl-(acyl-carrier-protein) synthase III YP_002993238.1 KEGG: dvl:Dvul_3030 adenylyl-sulfate kinase; TIGRFAM: adenylylsulfate kinase; PFAM: adenylylsulfate kinase YP_002993239.1 PFAM: MscS Mechanosensitive ion channel; KEGG: dps:DP1066 hypothetical protein YP_002993240.1 KEGG: gbm:Gbem_2378 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_002993241.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002993242.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: dde:Dde_2111 hypothetical protein YP_002993243.1 KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_002993244.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dvm:DvMF_0474 acetyltransferase YP_002993245.1 PFAM: redoxin; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; KEGG: dds:Ddes_1441 redoxin domain protein YP_002993246.1 PFAM: homocysteine S-methyltransferase; cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; dihydropteroate synthase DHPS; KEGG: dde:Dde_2115 methionine synthase (B12-dependent) YP_002993247.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: dvm:DvMF_0477 RNA polymerase, sigma 70 family subunit YP_002993248.1 KEGG: sfu:Sfum_3247 hypothetical protein YP_002993249.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dvm:DvMF_0478 hypothetical protein YP_002993250.1 KEGG: dde:Dde_2118 hypothetical protein YP_002993251.1 KEGG: dvm:DvMF_0480 hypothetical protein YP_002993252.1 KEGG: dvl:Dvul_1553 RpiB/LacA/LacB family sugar-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: ribose/galactose isomerase YP_002993253.1 TIGRFAM: transketolase; PFAM: transketolase; transketolase; KEGG: dat:HRM2_48140 Tkt1 YP_002993254.1 KEGG: ppd:Ppro_2358 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein YP_002993255.1 KEGG: ppf:Pput_3927 hypothetical protein YP_002993256.1 PFAM: glycosyl transferase family 2; KEGG: rme:Rmet_6128 glycosyl transferase, family 2 YP_002993257.1 PFAM: methyltransferase type 12; KEGG: pzu:PHZ_c0481 UbiE/COQ5 methyltransferase YP_002993258.1 KEGG: dat:HRM2_44200 hypothetical protein YP_002993259.1 KEGG: dde:Dde_0316 hypothetical protein YP_002993260.1 PFAM: protein of unknown function DUF748; KEGG: dde:Dde_0225 hypothetical protein YP_002993261.1 KEGG: dvm:DvMF_1457 hypothetical protein YP_002993262.1 KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002993263.1 KEGG: dvm:DvMF_1460 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; Metal-dependent hydrolase HDOD; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; PAS domain containing protein YP_002993264.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: dde:Dde_3003 two component Fis family transcriptional regulator YP_002993265.1 PFAM: carbonic anhydrase; KEGG: dvm:DvMF_2396 carbonic anhydrase YP_002993266.1 KEGG: bba:Bd2942 hypothetical protein YP_002993267.1 PFAM: CoA-binding domain protein; GCN5-related N-acetyltransferase; KEGG: dvm:DvMF_1776 GCN5-related N-acetyltransferase YP_002993268.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_3207 acetyl-coenzyme A synthetase YP_002993269.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sat:SYN_02087 cytoplasmic protein YP_002993270.1 KEGG: dal:Dalk_5017 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; Cache type 2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_002993271.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: glo:Glov_0136 multi-sensor signal transduction histidine kinase YP_002993272.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dvl:Dvul_2070 cobalamin-5-phosphate synthase CobS YP_002993273.1 PFAM: protein of unknown function DUF62; KEGG: dvm:DvMF_1391 protein of unknown function DUF62 YP_002993274.1 PFAM: protein of unknown function DUF161; KEGG: dat:HRM2_11660 hypothetical protein YP_002993275.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002993276.1 PFAM: sporulation domain protein; KEGG: dvl:Dvul_1815 sporulation domain-containing protein YP_002993278.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: scl:sce1591 hypothetical protein YP_002993279.1 KEGG: sfu:Sfum_2891 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_002993280.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: dde:Dde_2387 two component transcriptional regulator YP_002993281.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: rme:Rmet_3973 methyl-accepting chemotaxis sensory transducer YP_002993282.1 PFAM: Stage II sporulation E family protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: mca:MCA0833 response regulator YP_002993283.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_002993284.1 PFAM: response regulator receiver; CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: mms:mma_0014 CheA chemotaxis protein YP_002993285.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: bte:BTH_II0504 chemotaxis protein CheW YP_002993286.1 KEGG: pfs:PFLU1221 chemotaxis-related methyltransferase; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_002993287.1 PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: mms:mma_0017 CheW purine-binding chemotaxis protein YP_002993288.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: pfs:PFLU1219 methyl-accepting chemotaxis protein YP_002993290.1 KEGG: dvm:DvMF_2842 hypothetical protein YP_002993291.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: shl:Shal_1398 methyltransferase type 12 YP_002993292.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002993293.1 TIGRFAM: hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: dde:Dde_1833 hypothetical protein YP_002993294.1 KEGG: dde:Dde_1834 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_002993295.1 PFAM: glycosyl transferase group 1; KEGG: dvm:DvMF_0508 glycosyl transferase group 1 YP_002993296.1 PFAM: glycosyl transferase group 1; KEGG: dvu:DVU1803 glycosyl transferase, group 1 family protein YP_002993297.1 PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver; KEGG: dde:Dde_0391 response regulator receiver (CheY-like) modulated CheW protein YP_002993298.1 PFAM: protein of unknown function DUF152; KEGG: dvl:Dvul_2619 hypothetical protein YP_002993299.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: dvl:Dvul_2618 5-formyltetrahydrofolate cyclo-ligase YP_002993300.1 PFAM: metallophosphoesterase; KEGG: dds:Ddes_0792 metallophosphoesterase YP_002993301.1 PFAM: protein of unknown function DUF163; KEGG: dde:Dde_2291 hypothetical protein YP_002993302.1 KEGG: dde:Dde_2292 hypothetical protein YP_002993303.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: dvl:Dvul_1812 glucose inhibited division protein YP_002993304.1 PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_2729 drug resistance transporter YP_002993305.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dps:DP1862 transcriptional regulator YP_002993306.1 PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dal:Dalk_0736 two component, sigma54 specific, transcriptional regulator, Fis family YP_002993307.1 modulates transcription in response to the NADH/NAD(+) redox state YP_002993308.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dvl:Dvul_2067 ATP synthase F0, C subunit YP_002993309.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: dvm:DvMF_1388 ATP synthase F0, A subunit YP_002993310.1 PFAM: ATP synthase I; KEGG: dvm:DvMF_1387 ATP synthase I YP_002993311.1 KEGG: dvm:DvMF_1386 ATP synthase protein I YP_002993312.1 KEGG: dvm:DvMF_0590 ATP-dependent protease YP_002993313.1 KEGG: dvm:DvMF_1550 hypothetical protein YP_002993314.1 KEGG: geo:Geob_2662 peptidoglycan-binding LysM YP_002993315.1 PFAM: ion transporter ; TrkA-N domain protein; KEGG: dat:HRM2_17570 calcium-activated potassium channel (Kef-type K+ transport protein) YP_002993316.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: scl:sce6484 phosphoprotein phosphatase YP_002993317.1 KEGG: met:M446_0096 hypothetical protein YP_002993318.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: dat:HRM2_24100 Crp YP_002993319.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: ccv:CCV52592_0458 30S ribosomal protein S16 (BS17) YP_002993320.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: dde:Dde_0517 histone-like DNA-binding protein YP_002993321.1 PFAM: histidine triad (HIT) protein; KEGG: dvl:Dvul_2539 histidine triad (HIT) protein YP_002993322.1 PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dvl:Dvul_2540 radical SAM domain-containing protein YP_002993323.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0210 AhpF family protein/thioredoxin reductase YP_002993324.1 PFAM: alpha/beta hydrolase fold; KEGG: rpt:Rpal_0351 alpha/beta hydrolase fold YP_002993325.1 KEGG: lhk:LHK_01552 hypothetical protein YP_002993326.1 KEGG: dde:Dde_3736 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_002993327.1 PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: dde:Dde_3737 hypothetical protein YP_002993328.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0265 iron-sulfur cluster-binding protein YP_002993329.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: dal:Dalk_4757 transcriptional regulator, GntR family with aminotransferase domain YP_002993330.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vvu:VV2_1051 threonine efflux protein YP_002993331.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; KEGG: dat:HRM2_44930 YwkC YP_002993332.1 KEGG: wsu:WS1133 CiaB protein YP_002993333.1 TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: tgr:Tgr7_0602 hypothetical protein YP_002993334.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_002993335.1 PFAM: purine or other phosphorylase family 1; KEGG: dps:DP0528 MTA/SAH nucleosidase YP_002993336.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dal:Dalk_2139 transcriptional regulator, LysR family YP_002993337.1 KEGG: sfu:Sfum_1479 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; SMART: aldehyde ferredoxin oxidoreductase YP_002993338.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2944 iron-sulfur cluster-binding protein YP_002993339.1 KEGG: dvm:DvMF_0238 hypothetical protein YP_002993340.1 KEGG: dvm:DvMF_0238 hypothetical protein YP_002993341.1 PFAM: acyl transferase; KEGG: dvl:Dvul_1813 malonyl CoA-acyl carrier protein transacylase YP_002993342.1 PFAM: domain of unknown function DUF1745; KEGG: tau:Tola_1387 domain of unknown function DUF1745 YP_002993343.1 KEGG: sfu:Sfum_1120 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein YP_002993344.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: dde:Dde_0603 response regulator receiver domain-containing protein YP_002993345.1 PFAM: sodium:neurotransmitter symporter; KEGG: dat:HRM2_44940 Na+-dependent transporter YP_002993346.1 KEGG: vha:VIBHAR_02897 hypothetical protein YP_002993347.1 PFAM: nitroreductase; KEGG: dvm:DvMF_2975 nitroreductase YP_002993348.1 PFAM: dienelactone hydrolase; phospholipase/carboxylesterase; KEGG: dvm:DvMF_3032 dienelactone hydrolase YP_002993349.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tbd:Tbd_1114 cation efflux protein YP_002993350.1 PFAM: sodium:dicarboxylate symporter; KEGG: ppr:PBPRB1848 serine/threonine transporter SstT YP_002993351.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dde:Dde_3603 DEAD/DEAH box helicase-like YP_002993352.1 PFAM: MORN variant repeat protein; KEGG: shw:Sputw3181_3567 MORN repeat-containing protein YP_002993353.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: dde:Dde_3599 two component Fis family transcriptional regulator YP_002993354.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dvm:DvMF_2201 integral membrane sensor signal transduction histidine kinase YP_002993355.1 PFAM: phosphoglucose isomerase (PGI); KEGG: dvm:DvMF_2202 glucose-6-phosphate isomerase YP_002993356.1 PFAM: aminotransferase class I and II; KEGG: dvm:DvMF_2204 aminotransferase class I and II YP_002993358.1 KEGG: dde:Dde_0114 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; SMART: ATPase AAA YP_002993359.1 PFAM: protein of unknown function DUF214; KEGG: dvm:DvMF_2033 protein of unknown function DUF214 YP_002993360.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002993361.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: mca:MCA1165 NAD-dependent epimerase/dehydratase family protein YP_002993362.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP1667 iron-sulfur cluster-binding protein YP_002993363.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: sfu:Sfum_3208 haloacid dehalogenase domain protein hydrolase YP_002993364.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: noc:Noc_0982 geranylgeranyl reductase YP_002993365.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dat:HRM2_13600 hypothetical protein YP_002993366.1 PFAM: protein of unknown function DUF39; KEGG: dvm:DvMF_1464 protein of unknown function DUF39 YP_002993367.1 PFAM: chromosomal replication initiator DnaA domain; chromosomal replication initiator DnaA; SMART: chromosomal replication initiator DnaA domain; KEGG: dde:Dde_0001 chromosomal replication initiator protein DnaA YP_002993368.1 KEGG: dvm:DvMF_2082 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain YP_002993369.1 KEGG: dde:Dde_0003 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein YP_002993370.1 KEGG: dde:Dde_0004 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_002993371.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: dde:Dde_0005 lipoprotein YP_002993372.1 PFAM: YfbU family protein; KEGG: pmr:PMI1769 hypothetical protein YP_002993373.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pag:PLES_22181 transcriptional regulator YP_002993374.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: dps:DP2053 hypothetical protein YP_002993376.1 KEGG: dde:Dde_0104 L-glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp YP_002993377.1 KEGG: dde:Dde_3779 MerR family transcriptional regulator YP_002993379.1 KEGG: dde:Dde_3566 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain YP_002993380.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_002993381.1 PFAM: ferric-uptake regulator; KEGG: dde:Dde_2676 ferric uptake regulator family protein YP_002993382.1 KEGG: dal:Dalk_4092 hypothetical protein YP_002993383.1 TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; KEGG: dde:Dde_2771 Na+/H+ antiporter NhaA YP_002993384.1 KEGG: tgr:Tgr7_1864 diguanylate cyclase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; CHASE domain protein; ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: histidine kinase A domain protein; PAC repeat-containing protein; ATP-binding region ATPase domain protein; PAS domain containing protein YP_002993385.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: dat:HRM2_33390 two-component transcriptional regulatory protein YP_002993386.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_1561 TetR family transcriptional regulator YP_002993387.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: dde:Dde_1562 secretion protein HlyD YP_002993388.1 PFAM: acriflavin resistance protein; KEGG: dde:Dde_1563 cation/multidrug efflux pump-like YP_002993389.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vfm:VFMJ11_A1172 acetyltransferase YP_002993390.1 PFAM: amino acid permease-associated region; KEGG: dps:DP0919 proton-linked D-serine/D-alanine/glycine symporter YP_002993391.1 PFAM: Hpt domain protein; KEGG: hch:HCH_05739 signal transduction protein YP_002993392.1 KEGG: dvm:DvMF_2069 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_002993393.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002993394.1 PFAM: alanine racemase domain protein; KEGG: dvl:Dvul_2910 alanine racemase domain-containing protein YP_002993395.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA YP_002993396.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3588 OmpA family protein YP_002993397.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3587 chemotaxis protein MotB YP_002993398.1 PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_3586 flagellar protein FliL YP_002993399.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dvm:DvMF_2213 flagellar motor switch protein FliN YP_002993400.1 PFAM: flagellar biosynthesis protein FliO; KEGG: dds:Ddes_0376 flagellar biosynthesis protein FliO YP_002993401.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_002993402.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: dde:Dde_3582 flagellar biosynthetic protein FliQ YP_002993403.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dde:Dde_3581 RNA methyltransferase TrmH, group 3 YP_002993404.1 PFAM: lytic transglycosylase catalytic; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: dde:Dde_3580 peptidoglycan-binding LysM YP_002993405.1 PFAM: aldehyde Dehydrogenase; KEGG: pca:Pcar_1074 aldehyde dehydrogenase YP_002993406.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; KEGG: dvl:Dvul_2848 shikimate 5-dehydrogenase YP_002993407.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit YP_002993408.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dvm:DvMF_2056 thiamine pyrophosphate protein domain protein TPP-binding YP_002993409.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_002993410.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, delta subunit YP_002993411.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002993412.1 KEGG: dat:HRM2_p00520 hypothetical protein YP_002993413.1 KEGG: dat:HRM2_27640 lipoprotein YP_002993414.1 KEGG: dde:Dde_0039 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_002993415.1 KEGG: dde:Dde_0038 hypothetical protein YP_002993416.1 PFAM: protein of unknown function DUF107; KEGG: dde:Dde_0037 nodulation efficiency protein NfeD YP_002993417.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: dvl:Dvul_0039 band 7 protein YP_002993418.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: gme:Gmet_2330 NAD-dependent epimerase/dehydratase