-- dump date 20120504_143452 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002434431.1 218885110 7175154 4..1500 1 NC_011769.1 KEGG: dde:Dde_2320 DnaA family protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA 1500 7175154 DvMF_0001 Desulfovibrio vulgaris str. 'Miyazaki F' chromosomal replication initiator protein DnaA YP_002434431.1 4 D 883 CDS YP_002434432.1 218885111 7171869 1771..2325 1 NC_011769.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_2318 transcriptional regulator; XRE family transcriptional regulator 2325 7171869 DvMF_0002 Desulfovibrio vulgaris str. 'Miyazaki F' XRE family transcriptional regulator YP_002434432.1 1771 D 883 CDS YP_002434433.1 218885112 7171870 2583..4256 1 NC_011769.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2317 AMP-binding protein; AMP-dependent synthetase and ligase 4256 7171870 DvMF_0003 Desulfovibrio vulgaris str. 'Miyazaki F' AMP-dependent synthetase and ligase YP_002434433.1 2583 D 883 CDS YP_002434434.1 218885113 7171871 complement(4555..6309) 1 NC_011769.1 PFAM: hypothetical protein; protein of unknown function DUF181; hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_2348 hypothetical protein; hypothetical protein 6309 7171871 DvMF_0004 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434434.1 4555 R 883 CDS YP_002434435.1 218885114 7171872 complement(6402..7196) 1 NC_011769.1 PFAM: methyltransferase small; KEGG: sfu:Sfum_0452 methyltransferase type 12; methyltransferase 7196 7171872 DvMF_0005 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase YP_002434435.1 6402 R 883 CDS YP_002434436.1 218885115 7171873 complement(7599..8240) 1 NC_011769.1 KEGG: shw:Sputw3181_0818 GCN5-related N-acetyltransferase; hypothetical protein 8240 7171873 DvMF_0006 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434436.1 7599 R 883 CDS YP_002434437.1 218885116 7171875 9037..9444 1 NC_011769.1 PFAM: protein of unknown function DUF302; KEGG: dde:Dde_3562 hypothetical protein; hypothetical protein 9444 7171875 DvMF_0007 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434437.1 9037 D 883 CDS YP_002434438.1 218885117 7171880 10369..10731 1 NC_011769.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: dde:Dde_2345 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 10731 7171880 DvMF_0008 Desulfovibrio vulgaris str. 'Miyazaki F' TraR/DksA family transcriptional regulator YP_002434438.1 10369 D 883 CDS YP_002434439.1 218885118 7171881 10937..12919 1 NC_011769.1 PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: dde:Dde_2344 hypothetical protein; hypothetical protein 12919 7171881 DvMF_0009 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434439.1 10937 D 883 CDS YP_002434440.1 218885119 7171882 13084..14547 1 NC_011769.1 PFAM: EAL domain protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2343 diguanylate phosphodiesterase; diguanylate phosphodiesterase 14547 7171882 DvMF_0010 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate phosphodiesterase YP_002434440.1 13084 D 883 CDS YP_002434441.1 218885120 7171883 14550..15929 1 NC_011769.1 PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: gvi:glr2358 L-serine dehydratase; serine dehydratase subunit alpha 15929 7171883 DvMF_0011 Desulfovibrio vulgaris str. 'Miyazaki F' serine dehydratase subunit alpha YP_002434441.1 14550 D 883 CDS YP_002434442.1 218885121 7171884 complement(16161..17159) 1 NC_011769.1 KEGG: dde:Dde_2342 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 17159 7171884 DvMF_0012 Desulfovibrio vulgaris str. 'Miyazaki F' glyceraldehyde-3-phosphate dehydrogenase YP_002434442.1 16161 R 883 CDS YP_002434443.1 218885122 7171885 complement(17181..18104) 1 NC_011769.1 KEGG: dde:Dde_2341 fructose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase 18104 7171885 DvMF_0013 Desulfovibrio vulgaris str. 'Miyazaki F' fructose-1,6-bisphosphate aldolase YP_002434443.1 17181 R 883 CDS YP_002434444.1 218885123 7171886 18759..21203 1 NC_011769.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: glo:Glov_3394 pyruvate phosphate dikinase PEP/pyruvate-binding; hypothetical protein 21203 7171886 DvMF_0014 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434444.1 18759 D 883 CDS YP_002434445.1 218885124 7171887 21211..21834 1 NC_011769.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: glo:Glov_3393 peptidase C26; peptidase C26 21834 7171887 DvMF_0015 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase C26 YP_002434445.1 21211 D 883 CDS YP_002434446.1 218885125 7171888 21831..22622 1 NC_011769.1 KEGG: glo:Glov_3392 transferase; transferase 22622 7171888 DvMF_0016 Desulfovibrio vulgaris str. 'Miyazaki F' transferase YP_002434446.1 21831 D 883 CDS YP_002434447.1 218885126 7171889 22694..23458 1 NC_011769.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: wsu:WS2181 hypothetical protein; methyltransferase type 11 23458 7171889 DvMF_0017 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase type 11 YP_002434447.1 22694 D 883 CDS YP_002434448.1 218885127 7171890 23462..24049 1 NC_011769.1 PFAM: adenylylsulfate kinase; KEGG: pfo:PflO1_5510 adenylylsulfate kinase; adenylylsulfate kinase 24049 7171890 DvMF_0018 Desulfovibrio vulgaris str. 'Miyazaki F' adenylylsulfate kinase YP_002434448.1 23462 D 883 CDS YP_002434449.1 218885128 7171891 24087..25421 1 NC_011769.1 hypothetical protein 25421 7171891 DvMF_0019 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434449.1 24087 D 883 CDS YP_002434450.1 218885129 7171892 complement(25558..26634) 1 NC_011769.1 hypothetical protein 26634 7171892 DvMF_0020 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434450.1 25558 R 883 CDS YP_002434451.1 218885130 7171893 complement(26913..27722) 1 NC_011769.1 KEGG: dde:Dde_2340 exopolyphosphatase / 3'-nucleotidase / 5'-nucleotidase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 27722 7171893 DvMF_0021 Desulfovibrio vulgaris str. 'Miyazaki F' stationary-phase survival protein SurE YP_002434451.1 26913 R 883 CDS YP_002434452.1 218885131 7171894 28080..29165 1 NC_011769.1 KEGG: dde:Dde_2339 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 29165 7171894 DvMF_0022 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002434452.1 28080 D 883 CDS YP_002434453.1 218885132 7171895 29224..29871 1 NC_011769.1 PFAM: thymidylate kinase; KEGG: dde:Dde_2338 thymidylate kinase; dTMP kinase 29871 7171895 DvMF_0023 Desulfovibrio vulgaris str. 'Miyazaki F' dTMP kinase YP_002434453.1 29224 D 883 CDS YP_002434454.1 218885133 7171896 29953..31272 1 NC_011769.1 PFAM: histone deacetylase superfamily; KEGG: dde:Dde_2337 histone deacetylase family protein; histone deacetylase 31272 7171896 DvMF_0024 Desulfovibrio vulgaris str. 'Miyazaki F' histone deacetylase YP_002434454.1 29953 D 883 CDS YP_002434455.1 218885134 7171897 31317..32003 1 NC_011769.1 PFAM: protein of unknown function DUF1121; KEGG: dde:Dde_2335 hypothetical protein; hypothetical protein 32003 7171897 DvMF_0025 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434455.1 31317 D 883 CDS YP_002434456.1 218885135 7171898 32239..34368 1 NC_011769.1 TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: CoA-binding protein; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: dde:Dde_2334 succinyl-CoA synthetase (ADP-forming) alpha subunit / succinyl-CoA synthetase (ADP-forming) subunit beta; succinyl-CoA synthetase subunit alpha 34368 7171898 DvMF_0026 Desulfovibrio vulgaris str. 'Miyazaki F' succinyl-CoA synthetase subunit alpha YP_002434456.1 32239 D 883 CDS YP_002434457.1 218885136 7171899 34593..36311 1 NC_011769.1 TIGRFAM: indolepyruvate/phenylpyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: dde:Dde_2331 phenylpyruvate decarboxylase; indolepyruvate/phenylpyruvate decarboxylase 36311 7171899 DvMF_0027 Desulfovibrio vulgaris str. 'Miyazaki F' indolepyruvate/phenylpyruvate decarboxylase YP_002434457.1 34593 D 883 CDS YP_002434458.1 218885137 7171900 complement(36449..37012) 1 NC_011769.1 KEGG: dde:Dde_1347 hypothetical protein; hypothetical protein 37012 7171900 DvMF_0028 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434458.1 36449 R 883 CDS YP_002434459.1 218885138 7171901 complement(37215..37841) 1 NC_011769.1 KEGG: dame:34012.; hypothetical protein 37841 7171901 DvMF_0029 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434459.1 37215 R 883 CDS YP_002434460.1 218885139 7171902 complement(38598..38939) 1 NC_011769.1 KEGG: rci:LRC585 hypothetical protein; hypothetical protein 38939 7171902 DvMF_0030 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434460.1 38598 R 883 CDS YP_002434461.1 218885140 7171903 39238..39513 1 NC_011769.1 hypothetical protein 39513 7171903 DvMF_0031 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434461.1 39238 D 883 CDS YP_002434462.1 218885141 7171904 39790..41526 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: har:HEAR1631 hypothetical protein; diguanylate cyclase 41526 7171904 DvMF_0032 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002434462.1 39790 D 883 CDS YP_002434463.1 218885142 7171906 43413..45029 1 NC_011769.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_3923 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 45029 7171906 DvMF_0034 Desulfovibrio vulgaris str. 'Miyazaki F' NodT family RND efflux system outer membrane lipoprotein YP_002434463.1 43413 D 883 CDS YP_002434464.1 218885143 7171907 45068..46282 1 NC_011769.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: sfu:Sfum_3921 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 46282 7171907 DvMF_0035 Desulfovibrio vulgaris str. 'Miyazaki F' RND family efflux transporter MFP subunit YP_002434464.1 45068 D 883 CDS YP_002434465.1 218885144 7171908 46313..49459 1 NC_011769.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_3922 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 49459 7171908 DvMF_0036 Desulfovibrio vulgaris str. 'Miyazaki F' hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_002434465.1 46313 D 883 CDS YP_002434466.1 218885145 7171909 49462..50142 1 NC_011769.1 KEGG: sat:SYN_02957 hypothetical membrane protein; hypothetical protein 50142 7171909 DvMF_0037 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434466.1 49462 D 883 CDS YP_002434467.1 218885146 7171910 50269..51414 1 NC_011769.1 PFAM: protein of unknown function DUF140; KEGG: sat:SYN_02070 ABC transporter permease; hypothetical protein 51414 7171910 DvMF_0038 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434467.1 50269 D 883 CDS YP_002434468.1 218885147 7171911 51411..52319 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_2415 ABC transporter; ABC transporter 52319 7171911 DvMF_0039 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002434468.1 51411 D 883 CDS YP_002434469.1 218885148 7171912 52319..53302 1 NC_011769.1 PFAM: hypothetical protein; KEGG: dde:Dde_1983 hypothetical protein; hypothetical protein 53302 7171912 DvMF_0040 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434469.1 52319 D 883 CDS YP_002434470.1 218885149 7171913 53446..54039 1 NC_011769.1 PFAM: protein of unknown function DUF330; KEGG: mca:MCA0364 lipoprotein; hypothetical protein 54039 7171913 DvMF_0041 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434470.1 53446 D 883 CDS YP_002434471.1 218885150 7171914 54126..55274 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mca:MCA0504 GGDEF domain-containing protein; diguanylate cyclase 55274 7171914 DvMF_0042 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002434471.1 54126 D 883 CDS YP_002434472.1 218885151 7171916 57479..59059 1 NC_011769.1 KEGG: dde:Dde_2536 hypothetical protein; hypothetical protein 59059 7171916 DvMF_0043 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434472.1 57479 D 883 CDS YP_002434473.1 218885152 7171917 complement(59166..59999) 1 NC_011769.1 PFAM: ApbE family lipoprotein; KEGG: dde:Dde_2535 hypothetical protein; hypothetical protein 59999 7171917 DvMF_0044 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434473.1 59166 R 883 CDS YP_002434474.1 218885153 7171918 60152..61366 1 NC_011769.1 PFAM: endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 61366 7171918 DvMF_0045 Desulfovibrio vulgaris str. 'Miyazaki F' endonuclease/exonuclease/phosphatase YP_002434474.1 60152 D 883 CDS YP_002434475.1 218885154 7171919 61659..62561 1 NC_011769.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 62561 7171919 DvMF_0046 Desulfovibrio vulgaris str. 'Miyazaki F' ornithine carbamoyltransferase YP_002434475.1 61659 D 883 CDS YP_002434476.1 218885155 7171920 62630..63835 1 NC_011769.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 63835 7171920 DvMF_0047 Desulfovibrio vulgaris str. 'Miyazaki F' argininosuccinate synthase YP_002434476.1 62630 D 883 CDS YP_002434477.1 218885156 7171921 63998..65380 1 NC_011769.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 65380 7171921 DvMF_0048 Desulfovibrio vulgaris str. 'Miyazaki F' argininosuccinate lyase YP_002434477.1 63998 D 883 CDS YP_002434478.1 218885157 7171922 65645..66274 1 NC_011769.1 KEGG: cre:CHLREDRAFT_146629 hypothetical protein PROSITE: ALA_RICH; hypothetical protein 66274 7171922 DvMF_0049 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434478.1 65645 D 883 CDS YP_002434479.1 218885158 7171923 66553..66819 1 NC_011769.1 PFAM: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein 66819 7171923 DvMF_0050 Desulfovibrio vulgaris str. 'Miyazaki F' RNP-1 like RNA-binding protein YP_002434479.1 66553 D 883 CDS YP_002434480.1 218885159 7171924 complement(67046..67840) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_1507 amino acid ABC transporter periplasmic protein; family 3 extracellular solute-binding protein 67840 7171924 DvMF_0051 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002434480.1 67046 R 883 CDS YP_002434481.1 218885160 7171925 68597..68755 1 NC_011769.1 KEGG: dde:Dde_3728 hypothetical protein; hypothetical protein 68755 7171925 DvMF_0052 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434481.1 68597 D 883 CDS YP_002434482.1 218885161 7171926 69339..70088 1 NC_011769.1 KEGG: hch:HCH_03353 hypothetical protein; hypothetical protein 70088 7171926 DvMF_0053 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434482.1 69339 D 883 CDS YP_002434483.1 218885162 7171927 complement(70353..70790) 1 NC_011769.1 hypothetical protein 70790 7171927 DvMF_0054 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434483.1 70353 R 883 CDS YP_002434484.1 218885163 7171929 71779..73794 1 NC_011769.1 KEGG: dde:Dde_1513 FtsH peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; ATP-dependent metalloprotease FtsH 73794 7171929 DvMF_0055 Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent metalloprotease FtsH YP_002434484.1 71779 D 883 CDS YP_002434485.1 218885164 7171930 73791..74789 1 NC_011769.1 KEGG: dde:Dde_1514 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 74789 7171930 DvMF_0056 Desulfovibrio vulgaris str. 'Miyazaki F' dihydropteroate synthase YP_002434485.1 73791 D 883 CDS YP_002434486.1 218885165 7171931 74789..75532 1 NC_011769.1 PFAM: protein of unknown function DUF147; KEGG: dde:Dde_1515 hypothetical protein; hypothetical protein 75532 7171931 DvMF_0057 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434486.1 74789 D 883 CDS YP_002434487.1 218885166 7171932 75535..76434 1 NC_011769.1 PFAM: YbbR family protein; KEGG: dde:Dde_1516 hypothetical protein; hypothetical protein 76434 7171932 DvMF_0058 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434487.1 75535 D 883 CDS YP_002434488.1 218885167 7171933 76660..78012 1 NC_011769.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 78012 glmM 7171933 glmM Desulfovibrio vulgaris str. 'Miyazaki F' phosphoglucosamine mutase YP_002434488.1 76660 D 883 CDS YP_002434489.1 218885168 7171934 78141..79016 1 NC_011769.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: dde:Dde_1518 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase 79016 7171934 DvMF_0060 Desulfovibrio vulgaris str. 'Miyazaki F' UTP-glucose-1-phosphate uridylyltransferase YP_002434489.1 78141 D 883 CDS YP_002434490.1 218885169 7171935 79119..81539 1 NC_011769.1 KEGG: dde:Dde_1519 replication restart DNA helicase PriA; TIGRFAM: primosomal protein N'; PFAM: helicase; type III restriction protein res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases; primosomal protein N' 81539 7171935 DvMF_0061 Desulfovibrio vulgaris str. 'Miyazaki F' primosomal protein N' YP_002434490.1 79119 D 883 CDS YP_002434491.1 218885170 7171936 81573..81740 1 NC_011769.1 KEGG: dde:Dde_1520 hypothetical protein; hypothetical protein 81740 7171936 DvMF_0062 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434491.1 81573 D 883 CDS YP_002434492.1 218885171 7171937 81899..82291 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_1521 response regulator receiver domain-containing protein; response regulator receiver protein 82291 7171937 DvMF_0063 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002434492.1 81899 D 883 CDS YP_002434493.1 218885172 7171938 82288..84084 1 NC_011769.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_1522 histidine kinase; histidine kinase 84084 7171938 DvMF_0064 Desulfovibrio vulgaris str. 'Miyazaki F' histidine kinase YP_002434493.1 82288 D 883 CDS YP_002434494.1 218885173 7171939 84586..85872 1 NC_011769.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 85872 7171939 DvMF_0065 Desulfovibrio vulgaris str. 'Miyazaki F' aromatic hydrocarbon degradation membrane protein YP_002434494.1 84586 D 883 CDS YP_002434495.1 218885174 7171940 complement(86413..87576) 1 NC_011769.1 PFAM: polysulphide reductase NrfD; KEGG: dde:Dde_2275 reductase, transmembrane subunit; polysulphide reductase NrfD 87576 7171940 DvMF_0066 Desulfovibrio vulgaris str. 'Miyazaki F' polysulphide reductase NrfD YP_002434495.1 86413 R 883 CDS YP_002434496.1 218885175 7171941 complement(87588..88367) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2274 reductase, iron-sulfur binding subunit; 4Fe-4S ferredoxin 88367 7171941 DvMF_0067 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002434496.1 87588 R 883 CDS YP_002434497.1 218885176 7171942 complement(88367..88747) 1 NC_011769.1 KEGG: dde:Dde_2273 cytochrome C family protein; cytochrome C family protein 88747 7171942 DvMF_0068 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C family protein YP_002434497.1 88367 R 883 CDS YP_002434498.1 218885177 7171943 complement(88750..90360) 1 NC_011769.1 KEGG: dde:Dde_2272 reductase, iron-sulfur binding subunit; reductase, iron-sulfur binding subunit 90360 7171943 DvMF_0069 Desulfovibrio vulgaris str. 'Miyazaki F' reductase, iron-sulfur binding subunit YP_002434498.1 88750 R 883 CDS YP_002434499.1 218885178 7171944 complement(90370..91377) 1 NC_011769.1 PFAM: nitrate reductase subunit gamma; KEGG: dde:Dde_2271 nitrate reductase, subunit gamma; nitrate reductase subunit gamma 91377 7171944 DvMF_0070 Desulfovibrio vulgaris str. 'Miyazaki F' nitrate reductase subunit gamma YP_002434499.1 90370 R 883 CDS YP_002434500.1 218885179 7171945 complement(91393..91938) 1 NC_011769.1 KEGG: dde:Dde_2270 hypothetical protein; hypothetical protein 91938 7171945 DvMF_0071 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434500.1 91393 R 883 CDS YP_002434501.1 218885180 7171946 complement(92367..93407) 1 NC_011769.1 KEGG: dde:Dde_2268 hypothetical protein; hypothetical protein 93407 7171946 DvMF_0072 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434501.1 92367 R 883 CDS YP_002434502.1 218885181 7171947 93530..94480 1 NC_011769.1 PFAM: protein of unknown function DUF45; KEGG: cpb:Cphamn1_1661 protein of unknown function DUF45; hypothetical protein 94480 7171947 DvMF_0073 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434502.1 93530 D 883 CDS YP_002434503.1 218885182 7171948 complement(94764..96050) 1 NC_011769.1 KEGG: dde:Dde_2265 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; sulfate adenylyltransferase 96050 7171948 DvMF_0074 Desulfovibrio vulgaris str. 'Miyazaki F' sulfate adenylyltransferase YP_002434503.1 94764 R 883 CDS YP_002434504.1 218885183 7171949 97231..97602 1 NC_011769.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 97602 rpsL 7171949 rpsL Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S12 YP_002434504.1 97231 D 883 CDS YP_002434505.1 218885184 7171950 97618..98088 1 NC_011769.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 98088 7171950 DvMF_0076 Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S7 YP_002434505.1 97618 D 883 CDS YP_002434506.1 218885185 7171951 98107..100182 1 NC_011769.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 100182 7171951 DvMF_0077 Desulfovibrio vulgaris str. 'Miyazaki F' elongation factor G YP_002434506.1 98107 D 883 CDS YP_002434507.1 218885186 7171952 100967..101284 1 NC_011769.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 101284 rpsJ 7171952 rpsJ Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S10 YP_002434507.1 100967 D 883 CDS YP_002434508.1 218885187 7171953 101297..101926 1 NC_011769.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 101926 rplC 7171953 rplC Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L3 YP_002434508.1 101297 D 883 CDS YP_002434509.1 218885188 7171954 101945..102565 1 NC_011769.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 102565 rplD 7171954 rplD Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L4 YP_002434509.1 101945 D 883 CDS YP_002434510.1 218885189 7171955 102577..102867 1 NC_011769.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 102867 rplW 7171955 rplW Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L23 YP_002434510.1 102577 D 883 CDS YP_002434511.1 218885190 7171956 102871..103701 1 NC_011769.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 103701 rplB 7171956 rplB Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L2 YP_002434511.1 102871 D 883 CDS YP_002434512.1 218885191 7171957 103711..103992 1 NC_011769.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 103992 rpsS 7171957 rpsS Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S19 YP_002434512.1 103711 D 883 CDS YP_002434513.1 218885192 7171958 104005..104343 1 NC_011769.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 104343 rplV 7171958 rplV Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L22 YP_002434513.1 104005 D 883 CDS YP_002434514.1 218885193 7171959 104347..104988 1 NC_011769.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 104988 rpsC 7171959 rpsC Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S3 YP_002434514.1 104347 D 883 CDS YP_002434515.1 218885194 7171960 104988..105401 1 NC_011769.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 105401 rplP 7171960 rplP Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L16 YP_002434515.1 104988 D 883 CDS YP_002434516.1 218885195 7171961 105403..105588 1 NC_011769.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 105588 7171961 DvMF_0087 Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L29 YP_002434516.1 105403 D 883 CDS YP_002434517.1 218885196 7171962 105593..105859 1 NC_011769.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 105859 rpsQ 7171962 rpsQ Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S17 YP_002434517.1 105593 D 883 CDS YP_002434518.1 218885197 7171963 105869..106237 1 NC_011769.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 106237 rplN 7171963 rplN Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L14 YP_002434518.1 105869 D 883 CDS YP_002434519.1 218885198 7171964 106248..106571 1 NC_011769.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 106571 rplX 7171964 rplX Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L24 YP_002434519.1 106248 D 883 CDS YP_002434520.1 218885199 7171965 106583..107122 1 NC_011769.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 107122 rplE 7171965 rplE Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L5 YP_002434520.1 106583 D 883 CDS YP_002434521.1 218885200 7171966 107135..107320 1 NC_011769.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 107320 rpsN 7171966 rpsN Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S14 YP_002434521.1 107135 D 883 CDS YP_002434522.1 218885201 7171967 107339..107719 1 NC_011769.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 107719 rpsH 7171967 rpsH Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S8 YP_002434522.1 107339 D 883 CDS YP_002434523.1 218885202 7171968 107729..108265 1 NC_011769.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 108265 rplF 7171968 rplF Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L6 YP_002434523.1 107729 D 883 CDS YP_002434524.1 218885203 7171969 108280..108639 1 NC_011769.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 108639 rplR 7171969 rplR Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L18 YP_002434524.1 108280 D 883 CDS YP_002434525.1 218885204 7171970 108658..109149 1 NC_011769.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 109149 rpsE 7171970 rpsE Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S5 YP_002434525.1 108658 D 883 CDS YP_002434526.1 218885205 7171971 109159..109329 1 NC_011769.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 109329 rpmD 7171971 rpmD Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L30 YP_002434526.1 109159 D 883 CDS YP_002434527.1 218885206 7171972 109329..109778 1 NC_011769.1 late assembly protein; 50S ribosomal protein L15 109778 rplO 7171972 rplO Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L15 YP_002434527.1 109329 D 883 CDS YP_002434528.1 218885207 7171973 109782..111095 1 NC_011769.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 111095 secY 7171973 secY Desulfovibrio vulgaris str. 'Miyazaki F' preprotein translocase subunit SecY YP_002434528.1 109782 D 883 CDS YP_002434529.1 218885208 7171974 111097..111891 1 NC_011769.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dde:Dde_2236 methionine aminopeptidase, type I; methionine aminopeptidase 111891 7171974 DvMF_0100 Desulfovibrio vulgaris str. 'Miyazaki F' methionine aminopeptidase YP_002434529.1 111097 D 883 CDS YP_002434530.1 218885209 7171975 111977..112090 1 NC_011769.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 112090 rpmJ 7171975 rpmJ Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L36 YP_002434530.1 111977 D 883 CDS YP_002434531.1 218885210 7171976 112108..112476 1 NC_011769.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 112476 rpsM 7171976 rpsM Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S13 YP_002434531.1 112108 D 883 CDS YP_002434532.1 218885211 7171977 112628..113017 1 NC_011769.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 113017 7171977 DvMF_0103 Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S11 YP_002434532.1 112628 D 883 CDS YP_002434533.1 218885212 7171978 113034..113660 1 NC_011769.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 113660 rpsD 7171978 rpsD Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S4 YP_002434533.1 113034 D 883 CDS YP_002434534.1 218885213 7171979 113673..114716 1 NC_011769.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 114716 7171979 DvMF_0105 Desulfovibrio vulgaris str. 'Miyazaki F' DNA-directed RNA polymerase subunit alpha YP_002434534.1 113673 D 883 CDS YP_002434535.1 218885214 7171980 114706..115107 1 NC_011769.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 115107 rplQ 7171980 rplQ Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L17 YP_002434535.1 114706 D 883 CDS YP_002434536.1 218885215 7171981 complement(115303..116355) 1 NC_011769.1 Contains selenocysteine; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dde:Dde_2225 selenophosphate synthase; selenide, water dikinase 116355 7171981 DvMF_0107 Desulfovibrio vulgaris str. 'Miyazaki F' selenide, water dikinase YP_002434536.1 115303 R 883 CDS YP_002434537.1 218885216 7171982 complement(116352..117314) 1 NC_011769.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dde:Dde_2226 LysR family transcriptional regulator; LysR family transcriptional regulator 117314 7171982 DvMF_0108 Desulfovibrio vulgaris str. 'Miyazaki F' LysR family transcriptional regulator YP_002434537.1 116352 R 883 CDS YP_002434538.1 218885217 7171984 117805..119103 1 NC_011769.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: dde:Dde_2222 trigger factor; trigger factor 119103 7171984 DvMF_0109 Desulfovibrio vulgaris str. 'Miyazaki F' trigger factor YP_002434538.1 117805 D 883 CDS YP_002434539.1 218885218 7171985 119625..120230 1 NC_011769.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 120230 clpP 7171985 clpP Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent Clp protease proteolytic subunit YP_002434539.1 119625 D 883 CDS YP_002434540.1 218885219 7171986 120238..121776 1 NC_011769.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 121776 clpX 7171986 clpX Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent protease ATP-binding subunit ClpX YP_002434540.1 120238 D 883 CDS YP_002434541.1 218885220 7171987 121895..124357 1 NC_011769.1 KEGG: dde:Dde_2218 Lon-A peptidase; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA central domain protein; ATPase AAA; SMART: AAA ATPase; ATP-dependent protease La 124357 7171987 DvMF_0112 Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent protease La YP_002434541.1 121895 D 883 CDS YP_002434542.1 218885221 7171988 complement(124755..125330) 1 NC_011769.1 KEGG: dde:Dde_2213 hypothetical protein; hypothetical protein 125330 7171988 DvMF_0113 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434542.1 124755 R 883 CDS YP_002434543.1 218885222 7171989 complement(125353..125619) 1 NC_011769.1 hypothetical protein 125619 7171989 DvMF_0114 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434543.1 125353 R 883 CDS YP_002434544.1 218885223 7171990 complement(125637..126578) 1 NC_011769.1 KEGG: dde:Dde_2212 hypothetical protein; hypothetical protein 126578 7171990 DvMF_0115 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434544.1 125637 R 883 CDS YP_002434545.1 218885224 7171991 complement(126981..127409) 1 NC_011769.1 PFAM: ferric-uptake regulator; KEGG: dde:Dde_2211 ferric uptake regulator family protein; Fur family ferric uptake regulator 127409 7171991 DvMF_0116 Desulfovibrio vulgaris str. 'Miyazaki F' Fur family ferric uptake regulator YP_002434545.1 126981 R 883 CDS YP_002434546.1 218885225 7171992 complement(127653..128483) 1 NC_011769.1 PFAM: ABC transporter; KEGG: dde:Dde_2210 cation ABC transporter permease; ABC transporter 128483 7171992 DvMF_0117 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002434546.1 127653 R 883 CDS YP_002434547.1 218885226 7171993 complement(128483..129409) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2209 ATPase; ABC transporter 129409 7171993 DvMF_0118 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002434547.1 128483 R 883 CDS YP_002434548.1 218885227 7171994 complement(129416..130450) 1 NC_011769.1 PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter periplasmc-binding protein; periplasmic solute binding protein 130450 7171994 DvMF_0119 Desulfovibrio vulgaris str. 'Miyazaki F' periplasmic solute binding protein YP_002434548.1 129416 R 883 CDS YP_002434549.1 218885228 7171995 130879..131970 1 NC_011769.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 131970 ispG 7171995 ispG Desulfovibrio vulgaris str. 'Miyazaki F' 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_002434549.1 130879 D 883 CDS YP_002434550.1 218885229 7171996 131970..133697 1 NC_011769.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 133697 7171996 DvMF_0121 Desulfovibrio vulgaris str. 'Miyazaki F' prolyl-tRNA synthetase YP_002434550.1 131970 D 883 CDS YP_002434551.1 218885230 7171997 133898..135433 1 NC_011769.1 KEGG: dde:Dde_2204 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 135433 7171997 DvMF_0122 Desulfovibrio vulgaris str. 'Miyazaki F' exodeoxyribonuclease VII large subunit YP_002434551.1 133898 D 883 CDS YP_002434552.1 218885231 7171998 135433..136443 1 NC_011769.1 PFAM: peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase; peptidase M23 136443 7171998 DvMF_0123 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M23 YP_002434552.1 135433 D 883 CDS YP_002434553.1 218885232 7171999 136447..136749 1 NC_011769.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 136749 7171999 DvMF_0124 Desulfovibrio vulgaris str. 'Miyazaki F' exodeoxyribonuclease VII small subunit YP_002434553.1 136447 D 883 CDS YP_002434554.1 218885233 7172000 136733..137674 1 NC_011769.1 PFAM: polyprenyl synthetase; KEGG: dde:Dde_2201 farnesyl-diphosphate synthase; polyprenyl synthetase 137674 7172000 DvMF_0125 Desulfovibrio vulgaris str. 'Miyazaki F' polyprenyl synthetase YP_002434554.1 136733 D 883 CDS YP_002434555.1 218885234 7172001 137757..139697 1 NC_011769.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 139697 7172001 DvMF_0126 Desulfovibrio vulgaris str. 'Miyazaki F' 1-deoxy-D-xylulose-5-phosphate synthase YP_002434555.1 137757 D 883 CDS YP_002434556.1 218885235 7172002 complement(139865..142180) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 142180 7172002 DvMF_0127 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002434556.1 139865 R 883 CDS YP_002434557.1 218885236 7172003 complement(142355..142972) 1 NC_011769.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 142972 7172003 DvMF_0128 Desulfovibrio vulgaris str. 'Miyazaki F' multiple antibiotic resistance (MarC)-like protein YP_002434557.1 142355 R 883 CDS YP_002434558.1 218885237 7172004 complement(143165..143557) 1 NC_011769.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dde:Dde_2197 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl-tetrahydropterin synthase 143557 7172004 DvMF_0129 Desulfovibrio vulgaris str. 'Miyazaki F' 6-pyruvoyl-tetrahydropterin synthase YP_002434558.1 143165 R 883 CDS YP_002434559.1 218885238 7172005 complement(143616..147137) 1 NC_011769.1 KEGG: dde:Dde_2196 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 147137 7172005 DvMF_0130 Desulfovibrio vulgaris str. 'Miyazaki F' DNA polymerase III subunit alpha YP_002434559.1 143616 R 883 CDS YP_002434560.1 218885239 7172006 147498..147839 1 NC_011769.1 KEGG: dde:Dde_2194 hypothetical protein; hypothetical protein 147839 7172006 DvMF_0131 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434560.1 147498 D 883 CDS YP_002434561.1 218885240 7172007 147842..148711 1 NC_011769.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_2193 HD domain-containing protein; metal-dependent phosphohydrolase 148711 7172007 DvMF_0132 Desulfovibrio vulgaris str. 'Miyazaki F' metal-dependent phosphohydrolase YP_002434561.1 147842 D 883 CDS YP_002434562.1 218885241 7172008 148839..149576 1 NC_011769.1 PFAM: methyltransferase type 11; KEGG: dde:Dde_2191 hypothetical protein; methyltransferase type 11 149576 7172008 DvMF_0133 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase type 11 YP_002434562.1 148839 D 883 CDS YP_002434563.1 218885242 7172009 complement(149783..150322) 1 NC_011769.1 hypothetical protein 150322 7172009 DvMF_0134 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434563.1 149783 R 883 CDS YP_002434564.1 218885243 7172010 complement(150436..151254) 1 NC_011769.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfu:Sfum_3208 haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase 151254 7172010 DvMF_0135 Desulfovibrio vulgaris str. 'Miyazaki F' haloacid dehalogenase YP_002434564.1 150436 R 883 CDS YP_002434565.1 218885244 7172011 complement(151254..152498) 1 NC_011769.1 KEGG: lip:LI0254 hypothetical protein; hypothetical protein 152498 7172011 DvMF_0136 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434565.1 151254 R 883 CDS YP_002434566.1 218885245 7172012 152746..153816 1 NC_011769.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: dde:Dde_2187 UDP-galactose 4-epimerase; UDP-glucose 4-epimerase 153816 7172012 DvMF_0137 Desulfovibrio vulgaris str. 'Miyazaki F' UDP-glucose 4-epimerase YP_002434566.1 152746 D 883 CDS YP_002434567.1 218885246 7172013 complement(154079..155311) 1 NC_011769.1 KEGG: dde:Dde_2185 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase 155311 7172013 DvMF_0138 Desulfovibrio vulgaris str. 'Miyazaki F' lipid-A-disaccharide synthase YP_002434567.1 154079 R 883 CDS YP_002434568.1 218885247 7172014 complement(155322..156305) 1 NC_011769.1 PFAM: nucleoside recognition domain protein; KEGG: dde:Dde_2184 hypothetical protein; nucleoside recognition domain-containing protein 156305 7172014 DvMF_0139 Desulfovibrio vulgaris str. 'Miyazaki F' nucleoside recognition domain-containing protein YP_002434568.1 155322 R 883 CDS YP_002434569.1 218885248 7172015 complement(156372..157253) 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_2183 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 157253 7172015 DvMF_0140 Desulfovibrio vulgaris str. 'Miyazaki F' dTDP-4-dehydrorhamnose reductase YP_002434569.1 156372 R 883 CDS YP_002434570.1 218885249 7172016 complement(157250..158272) 1 NC_011769.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_2182 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 158272 7172016 DvMF_0141 Desulfovibrio vulgaris str. 'Miyazaki F' dTDP-glucose 4,6-dehydratase YP_002434570.1 157250 R 883 CDS YP_002434571.1 218885250 7172017 158638..159510 1 NC_011769.1 PFAM: anaerobic cobalt chelatase; KEGG: dde:Dde_2181 heme-binding protein; anaerobic cobalt chelatase 159510 7172017 DvMF_0142 Desulfovibrio vulgaris str. 'Miyazaki F' anaerobic cobalt chelatase YP_002434571.1 158638 D 883 CDS YP_002434572.1 218885251 7172018 159913..160863 1 NC_011769.1 KEGG: dde:Dde_2178 lipoprotein; lipoprotein 160863 7172018 DvMF_0143 Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein YP_002434572.1 159913 D 883 CDS YP_002434573.1 218885252 7172019 complement(160936..161139) 1 NC_011769.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dde:Dde_2177 twin arginine-targeting protein translocase; twin-arginine translocation protein, TatA/E family subunit 161139 7172019 DvMF_0144 Desulfovibrio vulgaris str. 'Miyazaki F' twin-arginine translocation protein, TatA/E family subunit YP_002434573.1 160936 R 883 CDS YP_002434574.1 218885253 7172020 161265..163133 1 NC_011769.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: rhodanese; KEGG: dde:Dde_2176 rhodanese-like protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 163133 7172020 DvMF_0145 Desulfovibrio vulgaris str. 'Miyazaki F' FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002434574.1 161265 D 883 CDS YP_002434575.1 218885254 7172021 163130..163639 1 NC_011769.1 KEGG: dde:Dde_2175 hypothetical protein; hypothetical protein 163639 7172021 DvMF_0146 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434575.1 163130 D 883 CDS YP_002434576.1 218885255 7172022 163646..164674 1 NC_011769.1 KEGG: dde:Dde_2174 hypothetical protein; hypothetical protein 164674 7172022 DvMF_0147 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434576.1 163646 D 883 CDS YP_002434577.1 218885256 7172023 164879..165622 1 NC_011769.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: dde:Dde_2173 HAD family hydrolase; HAD-superfamily hydrolase 165622 7172023 DvMF_0148 Desulfovibrio vulgaris str. 'Miyazaki F' HAD-superfamily hydrolase YP_002434577.1 164879 D 883 CDS YP_002434578.1 218885257 7172024 165865..166167 1 NC_011769.1 PFAM: protein of unknown function YGGT; KEGG: lip:LI0363 predicted integral membrane protein; hypothetical protein 166167 7172024 DvMF_0149 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434578.1 165865 D 883 CDS YP_002434579.1 218885258 7172025 166177..166686 1 NC_011769.1 PFAM: DivIVA family protein; KEGG: dde:Dde_2171 cell-division initiation protein DivIVA; DivIVA family protein 166686 7172025 DvMF_0150 Desulfovibrio vulgaris str. 'Miyazaki F' DivIVA family protein YP_002434579.1 166177 D 883 CDS YP_002434580.1 218885259 7172026 166673..166993 1 NC_011769.1 PFAM: protein of unknown function DUF167; KEGG: dde:Dde_2170 hypothetical protein; hypothetical protein 166993 7172026 DvMF_0151 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434580.1 166673 D 883 CDS YP_002434581.1 218885260 7172027 167023..167253 1 NC_011769.1 KEGG: dde:Dde_2169 hypothetical protein; hypothetical protein 167253 7172027 DvMF_0152 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434581.1 167023 D 883 CDS YP_002434582.1 218885261 7172028 167254..168942 1 NC_011769.1 KEGG: dde:Dde_2168 acetolactate synthase, large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; acetolactate synthase large subunit 168942 7172028 DvMF_0153 Desulfovibrio vulgaris str. 'Miyazaki F' acetolactate synthase large subunit YP_002434582.1 167254 D 883 CDS YP_002434583.1 218885262 7172029 168955..169446 1 NC_011769.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 169446 ilvH 7172029 ilvH Desulfovibrio vulgaris str. 'Miyazaki F' acetolactate synthase 3 regulatory subunit YP_002434583.1 168955 D 883 CDS YP_002434584.1 218885263 7172030 169782..170774 1 NC_011769.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 170774 7172030 DvMF_0155 Desulfovibrio vulgaris str. 'Miyazaki F' ketol-acid reductoisomerase YP_002434584.1 169782 D 883 CDS YP_002434585.1 218885264 7172031 171170..171736 1 NC_011769.1 PFAM: NADPH-dependent FMN reductase; KEGG: pfl:PFL_3289 FMN reductase, NADPH-dependent; NADPH-dependent FMN reductase 171736 7172031 DvMF_0156 Desulfovibrio vulgaris str. 'Miyazaki F' NADPH-dependent FMN reductase YP_002434585.1 171170 D 883 CDS YP_002434586.1 218885265 7172032 complement(172171..172386) 1 NC_011769.1 KEGG: dde:Dde_2165 hypothetical protein; hypothetical protein 172386 7172032 DvMF_0157 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434586.1 172171 R 883 CDS YP_002434587.1 218885266 7172033 complement(172600..172920) 1 NC_011769.1 KEGG: dde:Dde_2018 HesB-like domain-containing protein; Contains selenocysteine; HesB-like domain-containing protein 172920 7172033 DvMF_0158 Desulfovibrio vulgaris str. 'Miyazaki F' HesB-like domain-containing protein YP_002434587.1 172600 R 883 CDS YP_002434588.1 218885267 7172034 complement(173168..173461) 1 NC_011769.1 KEGG: dde:Dde_2018 HesB-like domain-containing protein; HesB-like domain-containing protein 173461 7172034 DvMF_0159 Desulfovibrio vulgaris str. 'Miyazaki F' HesB-like domain-containing protein YP_002434588.1 173168 R 883 CDS YP_002434589.1 218885268 7172035 173682..174215 1 NC_011769.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 174215 7172035 DvMF_0160 Desulfovibrio vulgaris str. 'Miyazaki F' bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_002434589.1 173682 D 883 CDS YP_002434590.1 218885269 7172036 complement(174367..176121) 1 NC_011769.1 KEGG: lip:LI0306 predicted integral membrane protein; integral membrane protein 176121 7172036 DvMF_0161 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane protein YP_002434590.1 174367 R 883 CDS YP_002434591.1 218885270 7172037 176913..178202 1 NC_011769.1 KEGG: gsu:GSU1966 hypothetical protein; hypothetical protein 178202 7172037 DvMF_0162 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434591.1 176913 D 883 CDS YP_002434592.1 218885271 7172039 complement(178837..179658) 1 NC_011769.1 KEGG: mms:mma_3662 hypothetical protein; hypothetical protein 179658 7172039 DvMF_0164 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434592.1 178837 R 883 CDS YP_002434593.1 218885272 7172040 complement(179780..180337) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_0451 4Fe-4S ferredoxin iron-sulfur binding; 4Fe-4S ferredoxin 180337 7172040 DvMF_0165 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002434593.1 179780 R 883 CDS YP_002434594.1 218885273 7172041 complement(180349..182484) 1 NC_011769.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mta:Moth_0450 formate dehydrogenase; formate dehydrogenase 182484 7172041 DvMF_0166 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase YP_002434594.1 180349 R 883 CDS YP_002434595.1 218885274 7172042 complement(182620..184020) 1 NC_011769.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gbm:Gbem_1735 twin-arginine translocation pathway signal; ECF subfamily RNA polymerase sigma-24 subunit 184020 7172042 DvMF_0167 Desulfovibrio vulgaris str. 'Miyazaki F' ECF subfamily RNA polymerase sigma-24 subunit YP_002434595.1 182620 R 883 CDS YP_002434596.1 218885275 7172043 complement(184541..185011) 1 NC_011769.1 hypothetical protein 185011 7172043 DvMF_0168 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434596.1 184541 R 883 CDS YP_002434597.1 218885276 7172045 complement(185305..185832) 1 NC_011769.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_1779 tRNA-adenosine deaminase; zinc-binding CMP/dCMP deaminase 185832 7172045 DvMF_0169 Desulfovibrio vulgaris str. 'Miyazaki F' zinc-binding CMP/dCMP deaminase YP_002434597.1 185305 R 883 CDS YP_002434598.1 218885277 7172046 complement(186210..186866) 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: dde:Dde_1780 hypothetical protein; hypothetical protein 186866 7172046 DvMF_0170 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434598.1 186210 R 883 CDS YP_002434599.1 218885278 7172047 187304..188914 1 NC_011769.1 PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1781 metallo-beta-lactamase family protein; beta-lactamase 188914 7172047 DvMF_0171 Desulfovibrio vulgaris str. 'Miyazaki F' beta-lactamase YP_002434599.1 187304 D 883 CDS YP_002434600.1 218885279 7172048 189028..189600 1 NC_011769.1 TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase KEGG: dde:Dde_1782 hypothetical protein; methyltransferase 189600 7172048 DvMF_0172 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase YP_002434600.1 189028 D 883 CDS YP_002434601.1 218885280 7172049 189576..190337 1 NC_011769.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 190337 coaD 7172049 coaD Desulfovibrio vulgaris str. 'Miyazaki F' phosphopantetheine adenylyltransferase YP_002434601.1 189576 D 883 CDS YP_002434602.1 218885281 7172050 190667..191680 1 NC_011769.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 191680 miaA 7172050 miaA Desulfovibrio vulgaris str. 'Miyazaki F' tRNA delta(2)-isopentenylpyrophosphate transferase YP_002434602.1 190667 D 883 CDS YP_002434603.1 218885282 7172051 191843..192373 1 NC_011769.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ppd:Ppro_1978 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 192373 7172051 DvMF_0175 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434603.1 191843 D 883 CDS YP_002434604.1 218885283 7172052 192376..192900 1 NC_011769.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: glo:Glov_2970 protein of unknown function DUF395 YeeE/YedE; hypothetical protein 192900 7172052 DvMF_0176 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434604.1 192376 D 883 CDS YP_002434605.1 218885284 7172053 193386..194675 1 NC_011769.1 PFAM: lytic transglycosylase catalytic; KEGG: dde:Dde_1786 membrane-bound lytic murein transglycosylase C; lytic transglycosylase 194675 7172053 DvMF_0177 Desulfovibrio vulgaris str. 'Miyazaki F' lytic transglycosylase YP_002434605.1 193386 D 883 CDS YP_002434606.1 218885285 7172054 194842..195351 1 NC_011769.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: dde:Dde_1787 lipoprotein; outer membrane chaperone Skp 195351 7172054 DvMF_0178 Desulfovibrio vulgaris str. 'Miyazaki F' outer membrane chaperone Skp YP_002434606.1 194842 D 883 CDS YP_002434607.1 218885286 7172055 complement(195652..196503) 1 NC_011769.1 KEGG: oan:Oant_2848 extracellular solute-binding protein family 3; hypothetical protein 196503 7172055 DvMF_0179 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434607.1 195652 R 883 CDS YP_002434608.1 218885287 7172056 complement(196771..197655) 1 NC_011769.1 KEGG: ppw:PputW619_4145 hypothetical protein; hypothetical protein 197655 7172056 DvMF_0180 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434608.1 196771 R 883 CDS YP_002434609.1 218885288 7172060 198695..199423 1 NC_011769.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dde:Dde_1789 phosphoadenylylsulfate reductase (thioredoxin); phosphoadenosine phosphosulfate reductase 199423 7172060 DvMF_0181 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoadenosine phosphosulfate reductase YP_002434609.1 198695 D 883 CDS YP_002434610.1 218885289 7172061 complement(199674..199892) 1 NC_011769.1 KEGG: dde:Dde_1790 hypothetical protein; hypothetical protein 199892 7172061 DvMF_0182 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434610.1 199674 R 883 CDS YP_002434611.1 218885290 7172062 200127..200642 1 NC_011769.1 PFAM: ferritin; KEGG: dde:Dde_1791 ferritin; ferroxidase 200642 7172062 DvMF_0183 Desulfovibrio vulgaris str. 'Miyazaki F' ferroxidase YP_002434611.1 200127 D 883 CDS YP_002434612.1 218885291 7172063 200775..202466 1 NC_011769.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1792 pyruvate ferredoxin oxidoreductase, subunit alpha; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 202466 7172063 DvMF_0184 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_002434612.1 200775 D 883 CDS YP_002434613.1 218885292 7172064 202524..203375 1 NC_011769.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_1793 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate; pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta 203375 7172064 DvMF_0185 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta YP_002434613.1 202524 D 883 CDS YP_002434614.1 218885293 7172065 203460..203807 1 NC_011769.1 KEGG: dde:Dde_1794 hypothetical protein; hypothetical protein 203807 7172065 DvMF_0186 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434614.1 203460 D 883 CDS YP_002434615.1 218885294 7172066 complement(203982..204512) 1 NC_011769.1 KEGG: dde:Dde_1795 hypothetical protein; hypothetical protein 204512 7172066 DvMF_0187 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434615.1 203982 R 883 CDS YP_002434616.1 218885295 7172067 complement(204748..205731) 1 NC_011769.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 205731 glpX 7172067 glpX Desulfovibrio vulgaris str. 'Miyazaki F' fructose 1,6-bisphosphatase II YP_002434616.1 204748 R 883 CDS YP_002434617.1 218885296 7172068 complement(206108..206962) 1 NC_011769.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 206962 purU 7172068 purU Desulfovibrio vulgaris str. 'Miyazaki F' formyltetrahydrofolate deformylase YP_002434617.1 206108 R 883 CDS YP_002434618.1 218885297 7172069 complement(207175..207579) 1 NC_011769.1 hypothetical protein 207579 7172069 DvMF_0190 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434618.1 207175 R 883 CDS YP_002434619.1 218885298 7172070 complement(207764..208000) 1 NC_011769.1 hypothetical protein 208000 7172070 DvMF_0191 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434619.1 207764 R 883 CDS YP_002434620.1 218885299 7172071 208626..211379 1 NC_011769.1 KEGG: mag:amb1260 HrpA-like helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 211379 7172071 DvMF_0192 Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent helicase HrpB YP_002434620.1 208626 D 883 CDS YP_002434621.1 218885300 7172072 211588..212277 1 NC_011769.1 KEGG: shw:Sputw3181_2461 lipoprotein; hypothetical protein 212277 7172072 DvMF_0193 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434621.1 211588 D 883 CDS YP_002434622.1 218885301 7172073 212761..213405 1 NC_011769.1 PFAM: protein of unknown function DUF161; KEGG: mba:Mbar_A3450 uncharacterized membrane protein; hypothetical protein 213405 7172073 DvMF_0194 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434622.1 212761 D 883 CDS YP_002434623.1 218885302 7172075 214229..214495 1 NC_011769.1 PFAM: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein 214495 7172075 DvMF_0195 Desulfovibrio vulgaris str. 'Miyazaki F' RNP-1 like RNA-binding protein YP_002434623.1 214229 D 883 CDS YP_002434624.1 218885303 7172076 214593..214811 1 NC_011769.1 TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; KEGG: dde:Dde_3769 translation initiation factor 1; translation initiation factor IF-1 214811 7172076 DvMF_0196 Desulfovibrio vulgaris str. 'Miyazaki F' translation initiation factor IF-1 YP_002434624.1 214593 D 883 CDS YP_002434625.1 218885304 7172077 215142..216617 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0265 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 216617 7172077 DvMF_0197 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002434625.1 215142 D 883 CDS YP_002434626.1 218885305 7172078 complement(217001..217324) 1 NC_011769.1 hypothetical protein 217324 7172078 DvMF_0198 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434626.1 217001 R 883 CDS YP_002434627.1 218885306 7172079 complement(217439..217942) 1 NC_011769.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: dde:Dde_1669 cob(I)yrinic acid a,c-diamide adenosyltransferase; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 217942 7172079 DvMF_0199 Desulfovibrio vulgaris str. 'Miyazaki F' ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_002434627.1 217439 R 883 CDS YP_002434628.1 218885307 7172080 complement(217942..219102) 1 NC_011769.1 PFAM: radical SAM protein; KEGG: dde:Dde_1670 radical SAM domain-containing protein; radical SAM protein 219102 7172080 DvMF_0200 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002434628.1 217942 R 883 CDS YP_002434629.1 218885308 7172081 complement(219292..219768) 1 NC_011769.1 KEGG: dame:35054.; hypothetical protein 219768 7172081 DvMF_0201 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434629.1 219292 R 883 CDS YP_002434630.1 218885309 7172082 219857..220909 1 NC_011769.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 220909 7172082 DvMF_0202 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosylaminoimidazole synthetase YP_002434630.1 219857 D 883 CDS YP_002434631.1 218885310 7172083 complement(221147..222682) 1 NC_011769.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1676 elongator protein 3/MiaB/NifB; radical SAM protein 222682 7172083 DvMF_0203 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002434631.1 221147 R 883 CDS YP_002434632.1 218885311 7172084 222839..223672 1 NC_011769.1 KEGG: dde:Dde_1677 hypothetical protein; hypothetical protein 223672 7172084 DvMF_0204 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434632.1 222839 D 883 CDS YP_002434633.1 218885312 7172085 223712..224239 1 NC_011769.1 KEGG: dde:Dde_1678 hypothetical protein; hypothetical protein 224239 7172085 DvMF_0205 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434633.1 223712 D 883 CDS YP_002434634.1 218885313 7172086 complement(224325..225326) 1 NC_011769.1 KEGG: dde:Dde_1679 hypothetical protein; hypothetical protein 225326 7172086 DvMF_0206 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434634.1 224325 R 883 CDS YP_002434635.1 218885314 7172087 225567..226856 1 NC_011769.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 226856 7172087 DvMF_0207 Desulfovibrio vulgaris str. 'Miyazaki F' thiamine biosynthesis protein ThiC YP_002434635.1 225567 D 883 CDS YP_002434636.1 218885315 7172088 complement(227131..229419) 1 NC_011769.1 PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: dsy:DSY1020 hypothetical protein; EAL domain-containing protein 229419 7172088 DvMF_0208 Desulfovibrio vulgaris str. 'Miyazaki F' EAL domain-containing protein YP_002434636.1 227131 R 883 CDS YP_002434637.1 218885316 7172089 complement(229450..230418) 1 NC_011769.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_1681 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 230418 7172089 DvMF_0209 Desulfovibrio vulgaris str. 'Miyazaki F' D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_002434637.1 229450 R 883 CDS YP_002434638.1 218885317 7172090 230566..232344 1 NC_011769.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:blr6548 leucine/isoleucine/valine-binding protein precursor; extracellular ligand-binding receptor 232344 7172090 DvMF_0210 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular ligand-binding receptor YP_002434638.1 230566 D 883 CDS YP_002434639.1 218885318 7172091 232341..235571 1 NC_011769.1 KEGG: mms:mma_2307 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 235571 7172091 DvMF_0211 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_002434639.1 232341 D 883 CDS YP_002434640.1 218885319 7172092 235664..239317 1 NC_011769.1 KEGG: dde:Dde_1682 hypothetical protein; hypothetical protein 239317 7172092 DvMF_0212 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434640.1 235664 D 883 CDS YP_002434641.1 218885320 7172093 239751..241919 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_1684 PAS/PAC sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 241919 7172093 DvMF_0213 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002434641.1 239751 D 883 CDS YP_002434642.1 218885321 7172095 242020..243606 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_1685 two component Fis family transcriptional regulator; Fis family transcriptional regulator 243606 7172095 DvMF_0215 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002434642.1 242020 D 883 CDS YP_002434643.1 218885322 7172096 243624..244205 1 NC_011769.1 KEGG: mxa:MXAN_3234 hypothetical protein; hypothetical protein 244205 7172096 DvMF_0216 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434643.1 243624 D 883 CDS YP_002434644.1 218885323 7172097 244495..244860 1 NC_011769.1 PFAM: Hpt domain protein; KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; Hpt protein 244860 7172097 DvMF_0217 Desulfovibrio vulgaris str. 'Miyazaki F' Hpt protein YP_002434644.1 244495 D 883 CDS YP_002434645.1 218885324 7172098 complement(244963..245226) 1 NC_011769.1 KEGG: dde:Dde_1687 hypothetical protein; hypothetical protein 245226 7172098 DvMF_0218 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434645.1 244963 R 883 CDS YP_002434646.1 218885325 7172099 complement(245544..246170) 1 NC_011769.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: aae:aq_486 alkyl hydroperoxide reductase; peroxiredoxin 246170 7172099 DvMF_0219 Desulfovibrio vulgaris str. 'Miyazaki F' peroxiredoxin YP_002434646.1 245544 R 883 CDS YP_002434647.1 218885326 7172100 complement(246533..247135) 1 NC_011769.1 KEGG: dde:Dde_1688 hypothetical protein; hypothetical protein 247135 7172100 DvMF_0220 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434647.1 246533 R 883 CDS YP_002434648.1 218885327 7172101 complement(247202..248239) 1 NC_011769.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1689 OmpA family protein; OmpA/MotB domain-containing protein 248239 7172101 DvMF_0221 Desulfovibrio vulgaris str. 'Miyazaki F' OmpA/MotB domain-containing protein YP_002434648.1 247202 R 883 CDS YP_002434649.1 218885328 7172102 complement(248395..249816) 1 NC_011769.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_1690 dihydrolipoamide dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 249816 7172102 DvMF_0222 Desulfovibrio vulgaris str. 'Miyazaki F' FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002434649.1 248395 R 883 CDS YP_002434650.1 218885329 7172103 complement(249806..251251) 1 NC_011769.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 251251 7172103 DvMF_0223 Desulfovibrio vulgaris str. 'Miyazaki F' glycine dehydrogenase subunit 2 YP_002434650.1 249806 R 883 CDS YP_002434651.1 218885330 7172104 complement(251248..252579) 1 NC_011769.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 252579 7172104 DvMF_0224 Desulfovibrio vulgaris str. 'Miyazaki F' glycine dehydrogenase subunit 1 YP_002434651.1 251248 R 883 CDS YP_002434652.1 218885331 7172105 complement(252596..252979) 1 NC_011769.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 252979 7172105 DvMF_0225 Desulfovibrio vulgaris str. 'Miyazaki F' glycine cleavage system protein H YP_002434652.1 252596 R 883 CDS YP_002434653.1 218885332 7172106 complement(253295..253708) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_1694 response regulator receiver domain-containing protein; response regulator receiver protein 253708 7172106 DvMF_0226 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002434653.1 253295 R 883 CDS YP_002434654.1 218885333 7172107 complement(253951..255600) 1 NC_011769.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 255600 7172107 DvMF_0227 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoglucomutase YP_002434654.1 253951 R 883 CDS YP_002434655.1 218885334 7172108 255816..256010 1 NC_011769.1 KEGG: mja:MJ0986 hypothetical protein; hypothetical protein 256010 7172108 DvMF_0228 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434655.1 255816 D 883 CDS YP_002434656.1 218885335 7172109 256056..257255 1 NC_011769.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: xcv:XCV1110 site-specific DNA-methyltransferase (cytosine-N(4)-specific); DNA methylase N-4/N-6 domain-containing protein 257255 7172109 DvMF_0229 Desulfovibrio vulgaris str. 'Miyazaki F' DNA methylase N-4/N-6 domain-containing protein YP_002434656.1 256056 D 883 CDS YP_002434657.1 218885336 7172110 complement(257241..258434) 1 NC_011769.1 KEGG: cno:NT01CX_1426 hypothetical protein; McrBC 5-methylcytosine restriction system component-like protein 258434 7172110 DvMF_0230 Desulfovibrio vulgaris str. 'Miyazaki F' McrBC 5-methylcytosine restriction system component-like protein YP_002434657.1 257241 R 883 CDS YP_002434658.1 218885337 7172111 complement(258427..259959) 1 NC_011769.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: cpf:CPF_0992 McrB domain protein; ATPase 259959 7172111 DvMF_0231 Desulfovibrio vulgaris str. 'Miyazaki F' ATPase YP_002434658.1 258427 R 883 CDS YP_002434659.1 218885338 7172114 complement(260828..261928) 1 NC_011769.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 261928 7172114 DvMF_0234 Desulfovibrio vulgaris str. 'Miyazaki F' GTP-dependent nucleic acid-binding protein EngD YP_002434659.1 260828 R 883 CDS YP_002434660.1 218885339 7172115 complement(262238..262888) 1 NC_011769.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: pst:PSPTO_3452 amino acid transporter LysE; lysine exporter protein LysE/YggA 262888 7172115 DvMF_0235 Desulfovibrio vulgaris str. 'Miyazaki F' lysine exporter protein LysE/YggA YP_002434660.1 262238 R 883 CDS YP_002434661.1 218885340 7172116 complement(263108..265921) 1 NC_011769.1 PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase; peptidase M16 domain-containing protein 265921 7172116 DvMF_0236 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M16 domain-containing protein YP_002434661.1 263108 R 883 CDS YP_002434662.1 218885341 7172117 266347..268356 1 NC_011769.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; Hpt domain protein; KEGG: dde:Dde_1700 chemotaxis protein CheA; chemotaxis protein CheA 268356 7172117 DvMF_0237 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheA YP_002434662.1 266347 D 883 CDS YP_002434663.1 218885342 7172118 complement(268699..268971) 1 NC_011769.1 KEGG: dol:Dole_0216 hypothetical protein; hypothetical protein 268971 7172118 DvMF_0238 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434663.1 268699 R 883 CDS YP_002434664.1 218885343 7172119 complement(269193..271886) 1 NC_011769.1 PFAM: radical SAM protein; beta tubulin, autoregulation binding site; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1701 elongator protein 3/MiaB/NifB; beta tubulin, autoregulation binding site 271886 7172119 DvMF_0239 Desulfovibrio vulgaris str. 'Miyazaki F' beta tubulin, autoregulation binding site YP_002434664.1 269193 R 883 CDS YP_002434665.1 218885344 7172120 complement(272132..272500) 1 NC_011769.1 KEGG: dde:Dde_1702 hypothetical protein; hypothetical protein 272500 7172120 DvMF_0240 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434665.1 272132 R 883 CDS YP_002434666.1 218885345 7172121 complement(272588..273805) 1 NC_011769.1 PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1703 hypothetical protein; major facilitator superfamily protein 273805 7172121 DvMF_0241 Desulfovibrio vulgaris str. 'Miyazaki F' major facilitator superfamily protein YP_002434666.1 272588 R 883 CDS YP_002434667.1 218885346 7172122 complement(273888..274952) 1 NC_011769.1 PFAM: DRTGG domain protein; KEGG: dde:Dde_1705 cobyrinic acid a,c-diamide synthase family protein; DRTGG domain-containing protein 274952 7172122 DvMF_0242 Desulfovibrio vulgaris str. 'Miyazaki F' DRTGG domain-containing protein YP_002434667.1 273888 R 883 CDS YP_002434668.1 218885347 7172123 275595..276287 1 NC_011769.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 276287 rnc 7172123 rnc Desulfovibrio vulgaris str. 'Miyazaki F' ribonuclease III YP_002434668.1 275595 D 883 CDS YP_002434669.1 218885348 7172124 complement(276388..277284) 1 NC_011769.1 PFAM: flagellin domain protein; KEGG: dde:Dde_1709 flagellin; flagellin domain-containing protein 277284 7172124 DvMF_0244 Desulfovibrio vulgaris str. 'Miyazaki F' flagellin domain-containing protein YP_002434669.1 276388 R 883 CDS YP_002434670.1 218885349 7172125 277587..277982 1 NC_011769.1 KEGG: dde:Dde_1710 hypothetical protein; hypothetical protein 277982 7172125 DvMF_0245 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434670.1 277587 D 883 CDS YP_002434671.1 218885350 7172126 complement(278706..280343) 1 NC_011769.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: dde:Dde_1711 flagellar hook protein FlgE; hypothetical protein 280343 7172126 DvMF_0246 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434671.1 278706 R 883 CDS YP_002434672.1 218885351 7172127 complement(280410..281201) 1 NC_011769.1 PFAM: flagellar hook capping protein; KEGG: dde:Dde_1712 basal-body rod modification protein FlgD; flagellar hook capping protein 281201 7172127 DvMF_0247 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar hook capping protein YP_002434672.1 280410 R 883 CDS YP_002434673.1 218885352 7172128 complement(281211..283106) 1 NC_011769.1 PFAM: flagellar hook-length control protein; KEGG: dde:Dde_1713 hypothetical protein; flagellar hook-length control protein 283106 7172128 DvMF_0248 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar hook-length control protein YP_002434673.1 281211 R 883 CDS YP_002434674.1 218885353 7172129 complement(283640..285205) 1 NC_011769.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1714 heptosyltransferase family protein; glycosyl transferase family protein 285205 7172129 DvMF_0249 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002434674.1 283640 R 883 CDS YP_002434675.1 218885354 7172130 complement(285258..287207) 1 NC_011769.1 KEGG: dde:Dde_1715 CgeB family protein; CgeB family protein 287207 7172130 DvMF_0250 Desulfovibrio vulgaris str. 'Miyazaki F' CgeB family protein YP_002434675.1 285258 R 883 CDS YP_002434676.1 218885355 7172131 complement(287292..288437) 1 NC_011769.1 PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein; hypothetical protein 288437 7172131 DvMF_0251 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434676.1 287292 R 883 CDS YP_002434677.1 218885356 7172132 complement(288559..288903) 1 NC_011769.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA; anti-sigma-factor antagonist 288903 7172132 DvMF_0252 Desulfovibrio vulgaris str. 'Miyazaki F' anti-sigma-factor antagonist YP_002434677.1 288559 R 883 CDS YP_002434678.1 218885357 7172133 complement(288852..289313) 1 NC_011769.1 KEGG: dde:Dde_1722 anti-sigma regulatory factor (serine/threonine protein kinase); signal transduction histidine kinase 289313 7172133 DvMF_0253 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction histidine kinase YP_002434678.1 288852 R 883 CDS YP_002434679.1 218885358 7172134 complement(289325..290917) 1 NC_011769.1 PFAM: response regulator receiver; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: dde:Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase; response regulator receiver modulated serine phosphatase 290917 7172134 DvMF_0254 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver modulated serine phosphatase YP_002434679.1 289325 R 883 CDS YP_002434680.1 218885359 7172135 complement(290904..291458) 1 NC_011769.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 291458 7172135 DvMF_0255 Desulfovibrio vulgaris str. 'Miyazaki F' D-tyrosyl-tRNA(Tyr) deacylase YP_002434680.1 290904 R 883 CDS YP_002434681.1 218885360 7172136 complement(291552..293303) 1 NC_011769.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 293303 7172136 DvMF_0256 Desulfovibrio vulgaris str. 'Miyazaki F' AMP-dependent synthetase and ligase YP_002434681.1 291552 R 883 CDS YP_002434682.1 218885361 7172137 complement(293621..294940) 1 NC_011769.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: dde:Dde_1726 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 294940 7172137 DvMF_0257 Desulfovibrio vulgaris str. 'Miyazaki F' 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002434682.1 293621 R 883 CDS YP_002434683.1 218885362 7172139 complement(295595..296344) 1 NC_011769.1 PFAM: protein of unknown function DUF164; KEGG: dde:Dde_1728 hypothetical protein; hypothetical protein 296344 7172139 DvMF_0258 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434683.1 295595 R 883 CDS YP_002434684.1 218885363 7172140 complement(296363..297397) 1 NC_011769.1 PFAM: protein of unknown function DUF34; KEGG: dde:Dde_1729 hypothetical protein; hypothetical protein 297397 7172140 DvMF_0259 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434684.1 296363 R 883 CDS YP_002434685.1 218885364 7172142 complement(297784..298740) 1 NC_011769.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2151 thioredoxin reductase; thioredoxin-disulfide reductase 298740 7172142 DvMF_0260 Desulfovibrio vulgaris str. 'Miyazaki F' thioredoxin-disulfide reductase YP_002434685.1 297784 R 883 CDS YP_002434686.1 218885365 7172143 complement(299020..299766) 1 NC_011769.1 KEGG: dde:Dde_2148 chemotaxis protein CheZ; chemotaxis protein CheZ 299766 7172143 DvMF_0261 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheZ YP_002434686.1 299020 R 883 CDS YP_002434687.1 218885366 7172144 complement(300268..300711) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2146 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 300711 7172144 DvMF_0262 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002434687.1 300268 R 883 CDS YP_002434688.1 218885367 7172145 complement(300745..301746) 1 NC_011769.1 TIGRFAM: tol-pal system protein YbgF; PFAM: hypothetical protein; KEGG: lip:LI1053 hypothetical protein; tol-pal system protein YbgF 301746 7172145 DvMF_0263 Desulfovibrio vulgaris str. 'Miyazaki F' tol-pal system protein YbgF YP_002434688.1 300745 R 883 CDS YP_002434689.1 218885368 7172146 complement(301845..302039) 1 NC_011769.1 KEGG: sfu:Sfum_0159 hypothetical protein; hypothetical protein 302039 7172146 DvMF_0264 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434689.1 301845 R 883 CDS YP_002434690.1 218885369 7172147 complement(302068..302568) 1 NC_011769.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 302568 lspA 7172147 lspA Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein signal peptidase YP_002434690.1 302068 R 883 CDS YP_002434691.1 218885370 7172148 complement(302686..305502) 1 NC_011769.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 305502 ileS 7172148 ileS Desulfovibrio vulgaris str. 'Miyazaki F' isoleucyl-tRNA synthetase YP_002434691.1 302686 R 883 CDS YP_002434692.1 218885371 7172149 complement(305868..306515) 1 NC_011769.1 PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_2141 GDSL family lipase; G-D-S-L family lipolytic protein 306515 7172149 DvMF_0267 Desulfovibrio vulgaris str. 'Miyazaki F' G-D-S-L family lipolytic protein YP_002434692.1 305868 R 883 CDS YP_002434693.1 218885372 7172150 complement(306663..306914) 1 NC_011769.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dde:Dde_2140 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 306914 7172150 DvMF_0268 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase assembly chaperone HypC/HupF YP_002434693.1 306663 R 883 CDS YP_002434694.1 218885373 7172151 complement(306977..307483) 1 NC_011769.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2139 hydrogenase expression/formation protein; hydrogenase expression/formation protein 307483 7172151 DvMF_0269 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase expression/formation protein YP_002434694.1 306977 R 883 CDS YP_002434695.1 218885374 7172152 complement(307818..309521) 1 NC_011769.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2138 periplasmic (NiFe) hydrogenase, large subunit, isozyme 1; nickel-dependent hydrogenase large subunit 309521 7172152 DvMF_0270 Desulfovibrio vulgaris str. 'Miyazaki F' nickel-dependent hydrogenase large subunit YP_002434695.1 307818 R 883 CDS YP_002434696.1 218885375 7172153 complement(309580..310533) 1 NC_011769.1 KEGG: dde:Dde_2137 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 310533 7172153 DvMF_0271 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase (NiFe) small subunit HydA YP_002434696.1 309580 R 883 CDS YP_002434697.1 218885376 7172154 complement(311118..311597) 1 NC_011769.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2136 peptidase M52, hydrogen uptake protein; hydrogenase maturation protease 311597 7172154 DvMF_0272 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase maturation protease YP_002434697.1 311118 R 883 CDS YP_002434698.1 218885377 7172155 complement(311959..313425) 1 NC_011769.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing; nickel-dependent hydrogenase large subunit 313425 7172155 DvMF_0273 Desulfovibrio vulgaris str. 'Miyazaki F' nickel-dependent hydrogenase large subunit YP_002434698.1 311959 R 883 CDS YP_002434699.1 218885378 7172156 complement(313455..314408) 1 NC_011769.1 KEGG: dde:Dde_2134 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 314408 7172156 DvMF_0274 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase (NiFe) small subunit HydA YP_002434699.1 313455 R 883 CDS YP_002434700.1 218885379 7172157 complement(314929..316551) 1 NC_011769.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: dde:Dde_2049 alpha-isopropylmalate/homocitrate synthase family transferase; alpha-isopropylmalate/homocitrate synthase family transferase 316551 7172157 DvMF_0275 Desulfovibrio vulgaris str. 'Miyazaki F' alpha-isopropylmalate/homocitrate synthase family transferase YP_002434700.1 314929 R 883 CDS YP_002434701.1 218885380 7172158 complement(316561..317790) 1 NC_011769.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 317790 7172158 DvMF_0276 Desulfovibrio vulgaris str. 'Miyazaki F' aspartate kinase YP_002434701.1 316561 R 883 CDS YP_002434702.1 218885381 7172159 complement(317861..318538) 1 NC_011769.1 PFAM: protein of unknown function UPF0079; KEGG: dde:Dde_2047 hypothetical protein; hypothetical protein 318538 7172159 DvMF_0277 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434702.1 317861 R 883 CDS YP_002434703.1 218885382 7172160 complement(318550..319002) 1 NC_011769.1 PFAM: CBS domain containing protein; KEGG: dde:Dde_2046 CBS; hypothetical protein 319002 7172160 DvMF_0278 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434703.1 318550 R 883 CDS YP_002434704.1 218885383 7172161 complement(318993..320738) 1 NC_011769.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: dde:Dde_2045 hypothetical protein; carbohydrate kinase 320738 7172161 DvMF_0279 Desulfovibrio vulgaris str. 'Miyazaki F' carbohydrate kinase YP_002434704.1 318993 R 883 CDS YP_002434705.1 218885384 7172162 complement(320848..321219) 1 NC_011769.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 321219 acpS 7172162 acpS Desulfovibrio vulgaris str. 'Miyazaki F' 4'-phosphopantetheinyl transferase YP_002434705.1 320848 R 883 CDS YP_002434706.1 218885385 7172163 complement(321367..322092) 1 NC_011769.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 322092 7172163 DvMF_0281 Desulfovibrio vulgaris str. 'Miyazaki F' pyridoxine 5'-phosphate synthase YP_002434706.1 321367 R 883 CDS YP_002434707.1 218885386 7172164 322443..323780 1 NC_011769.1 KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 323780 7172164 DvMF_0282 Desulfovibrio vulgaris str. 'Miyazaki F' nucleotide sugar dehydrogenase YP_002434707.1 322443 D 883 CDS YP_002434708.1 218885387 7172165 complement(324003..324227) 1 NC_011769.1 KEGG: dde:Dde_2041 hypothetical protein; hypothetical protein 324227 7172165 DvMF_0283 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434708.1 324003 R 883 CDS YP_002434709.1 218885388 7172166 324684..325160 1 NC_011769.1 PFAM: CheW domain protein; KEGG: dde:Dde_2040 CheW protein; chemotaxis protein CheW 325160 7172166 DvMF_0284 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheW YP_002434709.1 324684 D 883 CDS YP_002434710.1 218885389 7172167 325508..329101 1 NC_011769.1 KEGG: dde:Dde_2039 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases; transcription-repair coupling factor 329101 7172167 DvMF_0285 Desulfovibrio vulgaris str. 'Miyazaki F' transcription-repair coupling factor YP_002434710.1 325508 D 883 CDS YP_002434711.1 218885390 7172168 329212..330459 1 NC_011769.1 KEGG: dde:Dde_2038 hypothetical protein; hypothetical protein 330459 7172168 DvMF_0286 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434711.1 329212 D 883 CDS YP_002434712.1 218885391 7172169 330865..331827 1 NC_011769.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: lip:LI0303 parvulin-like peptidyl-prolyl isomerase; SurA domain-containing protein 331827 7172169 DvMF_0287 Desulfovibrio vulgaris str. 'Miyazaki F' SurA domain-containing protein YP_002434712.1 330865 D 883 CDS YP_002434713.1 218885392 7172170 331906..332943 1 NC_011769.1 SMART: helix-turn-helix domain protein; KEGG: dde:Dde_2036 XRE family transcriptional regulator; XRE family transcriptional regulator 332943 7172170 DvMF_0288 Desulfovibrio vulgaris str. 'Miyazaki F' XRE family transcriptional regulator YP_002434713.1 331906 D 883 CDS YP_002434714.1 218885393 7172171 333017..334537 1 NC_011769.1 PFAM: recombination protein O RecO; KEGG: dde:Dde_2035 DNA repair protein RecO; recombination protein O RecO 334537 7172171 DvMF_0289 Desulfovibrio vulgaris str. 'Miyazaki F' recombination protein O RecO YP_002434714.1 333017 D 883 CDS YP_002434715.1 218885394 7172172 334663..335538 1 NC_011769.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 335538 glyQ 7172172 glyQ Desulfovibrio vulgaris str. 'Miyazaki F' glycyl-tRNA synthetase subunit alpha YP_002434715.1 334663 D 883 CDS YP_002434716.1 218885395 7172173 335566..337671 1 NC_011769.1 KEGG: dde:Dde_2033 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase subunit beta; glycyl-tRNA synthetase subunit beta 337671 7172173 DvMF_0291 Desulfovibrio vulgaris str. 'Miyazaki F' glycyl-tRNA synthetase subunit beta YP_002434716.1 335566 D 883 CDS YP_002434717.1 218885396 7172174 337886..338149 1 NC_011769.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 338149 rpsT 7172174 rpsT Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S20 YP_002434717.1 337886 D 883 CDS YP_002434718.1 218885397 7172175 complement(338355..339026) 1 NC_011769.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 339026 7172175 DvMF_0293 Desulfovibrio vulgaris str. 'Miyazaki F' adenylate kinase YP_002434718.1 338355 R 883 CDS YP_002434719.1 218885398 7172176 complement(339344..340645) 1 NC_011769.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dde:Dde_2027 ketose-bisphosphate aldolase, class-II; tRNA(Ile)-lysidine synthetase 340645 7172176 DvMF_0294 Desulfovibrio vulgaris str. 'Miyazaki F' tRNA(Ile)-lysidine synthetase YP_002434719.1 339344 R 883 CDS YP_002434720.1 218885399 7172177 complement(340782..341117) 1 NC_011769.1 KEGG: dde:Dde_2026 hypothetical protein; hypothetical protein 341117 7172177 DvMF_0295 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434720.1 340782 R 883 CDS YP_002434721.1 218885400 7172178 complement(341126..342454) 1 NC_011769.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 342454 hemA 7172178 hemA Desulfovibrio vulgaris str. 'Miyazaki F' glutamyl-tRNA reductase YP_002434721.1 341126 R 883 CDS YP_002434722.1 218885401 7172179 complement(342557..343384) 1 NC_011769.1 PFAM: cytochrome C assembly protein; KEGG: dde:Dde_2024 cytochrome C assembly protein; cytochrome C assembly protein 343384 7172179 DvMF_0297 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C assembly protein YP_002434722.1 342557 R 883 CDS YP_002434723.1 218885402 7172180 complement(343371..344057) 1 NC_011769.1 TIGRFAM: siroheme synthase; KEGG: dde:Dde_2023 precorrin-2 dehydrogenase; siroheme synthase 344057 7172180 DvMF_0298 Desulfovibrio vulgaris str. 'Miyazaki F' siroheme synthase YP_002434723.1 343371 R 883 CDS YP_002434724.1 218885403 7172181 344389..345780 1 NC_011769.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_2022 heptosyltransferase family protein; glycosyl transferase family protein 345780 7172181 DvMF_0299 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002434724.1 344389 D 883 CDS YP_002434725.1 218885404 7172182 345898..347244 1 NC_011769.1 KEGG: dde:Dde_2021 CgeB family protein; CgeB family protein 347244 7172182 DvMF_0300 Desulfovibrio vulgaris str. 'Miyazaki F' CgeB family protein YP_002434725.1 345898 D 883 CDS YP_002434726.1 218885405 7172183 347389..348255 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein; family 3 extracellular solute-binding protein 348255 7172183 DvMF_0301 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002434726.1 347389 D 883 CDS YP_002434727.1 218885406 7172184 348371..348577 1 NC_011769.1 PFAM: domain of unknown function DUF1737; KEGG: mes:Meso_3267 hypothetical protein; hypothetical protein 348577 7172184 DvMF_0302 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434727.1 348371 D 883 CDS YP_002434728.1 218885407 7172185 complement(348603..350378) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 350378 7172185 DvMF_0303 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002434728.1 348603 R 883 CDS YP_002434729.1 218885408 7172186 complement(350452..350910) 1 NC_011769.1 PFAM: Cache type 2 domain protein; KEGG: lch:Lcho_2364 cache type 2 domain protein; cache sensor protein 350910 7172186 DvMF_0304 Desulfovibrio vulgaris str. 'Miyazaki F' cache sensor protein YP_002434729.1 350452 R 883 CDS YP_002434730.1 218885409 7172187 complement(351178..352026) 1 NC_011769.1 KEGG: dde:Dde_3211 split soret cytochrome C precursor; split soret cytochrome C precursor 352026 7172187 DvMF_0305 Desulfovibrio vulgaris str. 'Miyazaki F' split soret cytochrome C precursor YP_002434730.1 351178 R 883 CDS YP_002434731.1 218885410 7172188 complement(352491..353453) 1 NC_011769.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 353453 7172188 DvMF_0306 Desulfovibrio vulgaris str. 'Miyazaki F' acetylglutamate kinase YP_002434731.1 352491 R 883 CDS YP_002434732.1 218885411 7172189 complement(353685..355136) 1 NC_011769.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 355136 hslU 7172189 hslU Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent protease ATP-binding subunit HslU YP_002434732.1 353685 R 883 CDS YP_002434733.1 218885412 7172190 complement(355405..356850) 1 NC_011769.1 KEGG: dde:Dde_2013 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 356850 7172190 DvMF_0308 Desulfovibrio vulgaris str. 'Miyazaki F' protease Do YP_002434733.1 355405 R 883 CDS YP_002434734.1 218885413 7172191 complement(357123..358817) 1 NC_011769.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 358817 rpsA 7172191 rpsA Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S1 YP_002434734.1 357123 R 883 CDS YP_002434735.1 218885414 7172192 358970..359254 1 NC_011769.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dde:Dde_2010 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 359254 7172192 DvMF_0310 Desulfovibrio vulgaris str. 'Miyazaki F' PpiC-type peptidyl-prolyl cis-trans isomerase YP_002434735.1 358970 D 883 CDS YP_002434736.1 218885415 7172193 359623..360051 1 NC_011769.1 PFAM: heat shock protein Hsp20; KEGG: dde:Dde_2008 HSP20 family protein; heat shock protein Hsp20 360051 7172193 DvMF_0311 Desulfovibrio vulgaris str. 'Miyazaki F' heat shock protein Hsp20 YP_002434736.1 359623 D 883 CDS YP_002434737.1 218885416 7172194 360067..362688 1 NC_011769.1 PFAM: peptidase S16; KEGG: dde:Dde_2007 ATP-dependent protease; peptidase S16 362688 7172194 DvMF_0312 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase S16 YP_002434737.1 360067 D 883 CDS YP_002434738.1 218885417 7172195 363151..363390 1 NC_011769.1 KEGG: dde:Dde_2006 hypothetical protein; hypothetical protein 363390 7172195 DvMF_0313 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434738.1 363151 D 883 CDS YP_002434739.1 218885418 7172196 363941..364399 1 NC_011769.1 PFAM: protein of unknown function DUF485; KEGG: afw:Anae109_3835 protein of unknown function DUF485; hypothetical protein 364399 7172196 DvMF_0314 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434739.1 363941 D 883 CDS YP_002434740.1 218885419 7172197 364392..365951 1 NC_011769.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: afw:Anae109_3836 SSS sodium solute transporter superfamily; SSS sodium solute transporter superfamily protein 365951 7172197 DvMF_0315 Desulfovibrio vulgaris str. 'Miyazaki F' SSS sodium solute transporter superfamily protein YP_002434740.1 364392 D 883 CDS YP_002434741.1 218885420 7172198 365954..367684 1 NC_011769.1 PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase KEGG: aae:aq_2107 hypothetical protein; signal transduction protein with CBS domains 367684 7172198 DvMF_0316 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction protein with CBS domains YP_002434741.1 365954 D 883 CDS YP_002434742.1 218885421 7172199 367705..369897 1 NC_011769.1 PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase KEGG: cau:Caur_2724 protein of unknown function DUF294 nucleotidyltransferase; signal transduction protein with CBS domains 369897 7172199 DvMF_0317 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction protein with CBS domains YP_002434742.1 367705 D 883 CDS YP_002434743.1 218885422 7172200 369894..370697 1 NC_011769.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: afw:Anae109_4029 exonuclease RNase T and DNA polymerase III; exonuclease RNase T and DNA polymerase III 370697 7172200 DvMF_0318 Desulfovibrio vulgaris str. 'Miyazaki F' exonuclease RNase T and DNA polymerase III YP_002434743.1 369894 D 883 CDS YP_002434744.1 218885423 7172201 complement(370907..371416) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1075 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 371416 7172201 DvMF_0319 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002434744.1 370907 R 883 CDS YP_002434745.1 218885424 7172202 complement(371427..373529) 1 NC_011769.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dde:Dde_1076 thiosulfate reductase; formate dehydrogenase 373529 7172202 DvMF_0320 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase YP_002434745.1 371427 R 883 CDS YP_002434746.1 218885425 7172203 374055..375236 1 NC_011769.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3523 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 375236 7172203 DvMF_0321 Desulfovibrio vulgaris str. 'Miyazaki F' iron-containing alcohol dehydrogenase YP_002434746.1 374055 D 883 CDS YP_002434747.1 218885426 7172204 375516..376076 1 NC_011769.1 KEGG: dde:Dde_1207 heterodisulfide reductase, C subunit; heterodisulfide reductase subunit C 376076 7172204 DvMF_0322 Desulfovibrio vulgaris str. 'Miyazaki F' heterodisulfide reductase subunit C YP_002434747.1 375516 D 883 CDS YP_002434748.1 218885427 7172205 376073..377053 1 NC_011769.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C; CoB--CoM heterodisulfide reductase 377053 7172205 DvMF_0323 Desulfovibrio vulgaris str. 'Miyazaki F' CoB--CoM heterodisulfide reductase YP_002434748.1 376073 D 883 CDS YP_002434749.1 218885428 7172206 377050..379008 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3526 heterodisulfide reductase, subunit alpha; 4Fe-4S ferredoxin 379008 7172206 DvMF_0324 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002434749.1 377050 D 883 CDS YP_002434750.1 218885429 7172207 378996..380501 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase subunit delta; KEGG: dde:Dde_3528 hydrogenase, iron-sulfur cluster-binding subunit; methyl-viologen-reducing hydrogenase subunit delta 380501 7172207 DvMF_0325 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-viologen-reducing hydrogenase subunit delta YP_002434750.1 378996 D 883 CDS YP_002434751.1 218885430 7172208 380501..381592 1 NC_011769.1 KEGG: dde:Dde_1212 hydrogenase; hydrogenase 381592 7172208 DvMF_0326 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase YP_002434751.1 380501 D 883 CDS YP_002434752.1 218885431 7172209 381585..382472 1 NC_011769.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1213 hydrogenase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 382472 7172209 DvMF_0327 Desulfovibrio vulgaris str. 'Miyazaki F' oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_002434752.1 381585 D 883 CDS YP_002434753.1 218885432 7172210 382768..383256 1 NC_011769.1 KEGG: dde:Dde_1214 hypothetical protein; hypothetical protein 383256 7172210 DvMF_0328 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434753.1 382768 D 883 CDS YP_002434754.1 218885433 7172211 383521..384408 1 NC_011769.1 KEGG: dde:Dde_3531 hypothetical protein; hypothetical protein 384408 7172211 DvMF_0329 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434754.1 383521 D 883 CDS YP_002434755.1 218885434 7172212 384682..385824 1 NC_011769.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3534 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 385824 7172212 DvMF_0330 Desulfovibrio vulgaris str. 'Miyazaki F' iron-containing alcohol dehydrogenase YP_002434755.1 384682 D 883 CDS YP_002434756.1 218885435 7172213 385826..387151 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_3535 histidine kinase; PAS/PAC sensor signal transduction histidine kinase 387151 7172213 DvMF_0331 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor signal transduction histidine kinase YP_002434756.1 385826 D 883 CDS YP_002434757.1 218885436 7172214 387157..388566 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3536 two component Fis family transcriptional regulator; Fis family transcriptional regulator 388566 7172214 DvMF_0332 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002434757.1 387157 D 883 CDS YP_002434758.1 218885437 7172215 388796..389899 1 NC_011769.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: tcx:Tcr_1009 ADP-ribosylation/crystallin J1; ADP-ribosylation/crystallin J1 389899 7172215 DvMF_0333 Desulfovibrio vulgaris str. 'Miyazaki F' ADP-ribosylation/crystallin J1 YP_002434758.1 388796 D 883 CDS YP_002434759.1 218885438 7172217 390542..391663 1 NC_011769.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: sth:STH2668 glutamyl-tRNA synthetase; glutamate--tRNA ligase 391663 7172217 DvMF_0334 Desulfovibrio vulgaris str. 'Miyazaki F' glutamate--tRNA ligase YP_002434759.1 390542 D 883 CDS YP_002434760.1 218885439 7172218 392003..392395 1 NC_011769.1 KEGG: dde:Dde_2003 hypothetical protein; hypothetical protein 392395 7172218 DvMF_0335 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434760.1 392003 D 883 CDS YP_002434761.1 218885440 7172219 complement(392561..393136) 1 NC_011769.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator; TetR family transcriptional regulator 393136 7172219 DvMF_0336 Desulfovibrio vulgaris str. 'Miyazaki F' TetR family transcriptional regulator YP_002434761.1 392561 R 883 CDS YP_002434762.1 218885441 7172220 complement(393970..394812) 1 NC_011769.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: dde:Dde_2001 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 394812 7172220 DvMF_0337 Desulfovibrio vulgaris str. 'Miyazaki F' phospholipid/glycerol acyltransferase YP_002434762.1 393970 R 883 CDS YP_002434763.1 218885442 7172221 complement(394992..395663) 1 NC_011769.1 KEGG: dde:Dde_1999 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 395663 7172221 DvMF_0338 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002434763.1 394992 R 883 CDS YP_002434764.1 218885443 7172222 complement(395783..397009) 1 NC_011769.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: dde:Dde_1998 recombination factor protein RarA; recombination factor protein RarA 397009 7172222 DvMF_0339 Desulfovibrio vulgaris str. 'Miyazaki F' recombination factor protein RarA YP_002434764.1 395783 R 883 CDS YP_002434765.1 218885444 7172223 complement(397375..398094) 1 NC_011769.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 398094 7172223 DvMF_0340 Desulfovibrio vulgaris str. 'Miyazaki F' 16S ribosomal RNA methyltransferase RsmE YP_002434765.1 397375 R 883 CDS YP_002434766.1 218885445 7172224 complement(398287..399375) 1 NC_011769.1 TIGRFAM: glycine cleavage system protein T; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: dde:Dde_1996 glycine cleavage system protein T; glycine cleavage system protein T 399375 7172224 DvMF_0341 Desulfovibrio vulgaris str. 'Miyazaki F' glycine cleavage system protein T YP_002434766.1 398287 R 883 CDS YP_002434767.1 218885446 7172225 complement(399735..401453) 1 NC_011769.1 KEGG: dde:Dde_1995 hypothetical protein; hypothetical protein 401453 7172225 DvMF_0342 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434767.1 399735 R 883 CDS YP_002434768.1 218885447 7172226 402023..403123 1 NC_011769.1 PFAM: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein; GAF sensor protein 403123 7172226 DvMF_0343 Desulfovibrio vulgaris str. 'Miyazaki F' GAF sensor protein YP_002434768.1 402023 D 883 CDS YP_002434769.1 218885448 7172227 403148..404170 1 NC_011769.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: dde:Dde_1993 rod shape-determining protein MreB; rod shape-determining protein MreB 404170 7172227 DvMF_0344 Desulfovibrio vulgaris str. 'Miyazaki F' rod shape-determining protein MreB YP_002434769.1 403148 D 883 CDS YP_002434770.1 218885449 7172228 404295..405161 1 NC_011769.1 PFAM: inositol monophosphatase; KEGG: dde:Dde_1992 inositol-1-monophosphatase; inositol-phosphate phosphatase 405161 7172228 DvMF_0345 Desulfovibrio vulgaris str. 'Miyazaki F' inositol-phosphate phosphatase YP_002434770.1 404295 D 883 CDS YP_002434771.1 218885450 7172229 complement(405236..405784) 1 NC_011769.1 PFAM: NUDIX hydrolase; KEGG: dde:Dde_1991 isopentenyl-diphosphate delta-isomerase; NUDIX hydrolase 405784 7172229 DvMF_0346 Desulfovibrio vulgaris str. 'Miyazaki F' NUDIX hydrolase YP_002434771.1 405236 R 883 CDS YP_002434772.1 218885451 7172230 405948..406526 1 NC_011769.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_1990 30S ribosomal protein S18P alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 406526 7172230 DvMF_0347 Desulfovibrio vulgaris str. 'Miyazaki F' ribosomal-protein-alanine acetyltransferase YP_002434772.1 405948 D 883 CDS YP_002434773.1 218885452 7172231 406726..407481 1 NC_011769.1 PFAM: triosephosphate isomerase; KEGG: dde:Dde_1989 triosephosphate isomerase; triose-phosphate isomerase 407481 7172231 DvMF_0348 Desulfovibrio vulgaris str. 'Miyazaki F' triose-phosphate isomerase YP_002434773.1 406726 D 883 CDS YP_002434774.1 218885453 7172232 407520..407864 1 NC_011769.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: lip:LI1131 preprotein translocase subunit SecG; preprotein translocase subunit SecG 407864 secG 7172232 secG Desulfovibrio vulgaris str. 'Miyazaki F' preprotein translocase subunit SecG YP_002434774.1 407520 D 883 CDS YP_002434775.1 218885454 7172234 complement(408188..409153) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: vvy:VV1499 hypothetical protein; family 3 extracellular solute-binding protein 409153 7172234 DvMF_0350 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002434775.1 408188 R 883 CDS YP_002434776.1 218885455 7172235 complement(409460..409624) 1 NC_011769.1 KEGG: dde:Dde_1981 hypothetical protein; hypothetical protein 409624 7172235 DvMF_0351 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434776.1 409460 R 883 CDS YP_002434777.1 218885456 7172236 complement(409755..410540) 1 NC_011769.1 PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dde:Dde_1980 transcriptional regulator; phage repressor 410540 7172236 DvMF_0352 Desulfovibrio vulgaris str. 'Miyazaki F' phage repressor YP_002434777.1 409755 R 883 CDS YP_002434778.1 218885457 7172237 complement(410826..412076) 1 NC_011769.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dde:Dde_1978 diaminopimelate decarboxylase; diaminopimelate decarboxylase 412076 7172237 DvMF_0353 Desulfovibrio vulgaris str. 'Miyazaki F' diaminopimelate decarboxylase YP_002434778.1 410826 R 883 CDS YP_002434779.1 218885458 7172238 complement(412173..412694) 1 NC_011769.1 KEGG: dde:Dde_1977 lipoprotein; hypothetical protein 412694 7172238 DvMF_0354 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434779.1 412173 R 883 CDS YP_002434780.1 218885459 7172239 complement(412711..415443) 1 NC_011769.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 415443 7172239 DvMF_0355 Desulfovibrio vulgaris str. 'Miyazaki F' DNA mismatch repair protein MutS YP_002434780.1 412711 R 883 CDS YP_002434781.1 218885460 7172240 complement(415905..417113) 1 NC_011769.1 PFAM: hypothetical protein; KEGG: dde:Dde_1975 hypothetical protein; hypothetical protein 417113 7172240 DvMF_0356 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434781.1 415905 R 883 CDS YP_002434782.1 218885461 7172241 complement(417126..418022) 1 NC_011769.1 PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein; histidine triad (HIT) protein 418022 7172241 DvMF_0357 Desulfovibrio vulgaris str. 'Miyazaki F' histidine triad (HIT) protein YP_002434782.1 417126 R 883 CDS YP_002434783.1 218885462 7172242 complement(418298..421531) 1 NC_011769.1 PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: dde:Dde_1972 CBS; hypothetical protein 421531 7172242 DvMF_0358 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434783.1 418298 R 883 CDS YP_002434784.1 218885463 7172243 complement(421576..422448) 1 NC_011769.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase; KEGG: dde:Dde_1971 tyrosine recombinase XerD subunit; tyrosine recombinase XerD 422448 7172243 DvMF_0359 Desulfovibrio vulgaris str. 'Miyazaki F' tyrosine recombinase XerD YP_002434784.1 421576 R 883 CDS YP_002434785.1 218885464 7172244 complement(423036..424775) 1 NC_011769.1 PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 424775 7172244 DvMF_0360 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002434785.1 423036 R 883 CDS YP_002434786.1 218885465 7172245 425474..426643 1 NC_011769.1 catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis; LL-diaminopimelate aminotransferase 426643 7172245 DvMF_0361 Desulfovibrio vulgaris str. 'Miyazaki F' LL-diaminopimelate aminotransferase YP_002434786.1 425474 D 883 CDS YP_002434787.1 218885466 7172246 426724..427200 1 NC_011769.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: lip:LI0240 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 427200 7172246 DvMF_0362 Desulfovibrio vulgaris str. 'Miyazaki F' 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_002434787.1 426724 D 883 CDS YP_002434788.1 218885467 7172247 427270..427566 1 NC_011769.1 SMART: TRASH domain protein; KEGG: dde:Dde_1968 TRASH; TRASH domain-containing protein 427566 7172247 DvMF_0363 Desulfovibrio vulgaris str. 'Miyazaki F' TRASH domain-containing protein YP_002434788.1 427270 D 883 CDS YP_002434789.1 218885468 7172248 427759..428412 1 NC_011769.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 428412 7172248 DvMF_0364 Desulfovibrio vulgaris str. 'Miyazaki F' translaldolase YP_002434789.1 427759 D 883 CDS YP_002434790.1 218885469 7172249 complement(429540..430415) 1 NC_011769.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: lip:LI0871 acyltransferase, HtrB/MsbB family; lipid A biosynthesis acyltransferase 430415 7172249 DvMF_0365 Desulfovibrio vulgaris str. 'Miyazaki F' lipid A biosynthesis acyltransferase YP_002434790.1 429540 R 883 CDS YP_002434791.1 218885470 7172250 complement(430499..431161) 1 NC_011769.1 PFAM: protein of unknown function DUF374; KEGG: dde:Dde_1961 hypothetical protein; hypothetical protein 431161 7172250 DvMF_0366 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434791.1 430499 R 883 CDS YP_002434792.1 218885471 7172251 complement(431158..433014) 1 NC_011769.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_1960 lipid A export ATP-binding/permease MsbA; ABC transporter 433014 7172251 DvMF_0367 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002434792.1 431158 R 883 CDS YP_002434793.1 218885472 7172252 433127..433771 1 NC_011769.1 KEGG: dde:Dde_1959 hypothetical protein; hypothetical protein 433771 7172252 DvMF_0368 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434793.1 433127 D 883 CDS YP_002434794.1 218885473 7172253 434506..435261 1 NC_011769.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: dde:Dde_1958 pseudouridine synthase, Rsu; pseudouridine synthase 435261 7172253 DvMF_0369 Desulfovibrio vulgaris str. 'Miyazaki F' pseudouridine synthase YP_002434794.1 434506 D 883 CDS YP_002434795.1 218885474 7172254 complement(435565..436266) 1 NC_011769.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dde:Dde_1956 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 436266 7172254 DvMF_0370 Desulfovibrio vulgaris str. 'Miyazaki F' outer membrane lipoprotein carrier protein LolA YP_002434795.1 435565 R 883 CDS YP_002434796.1 218885475 7172255 complement(436601..439333) 1 NC_011769.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: dde:Dde_1955 FtsK/SpoIIIE family protein; cell division protein FtsK 439333 7172255 DvMF_0371 Desulfovibrio vulgaris str. 'Miyazaki F' cell division protein FtsK YP_002434796.1 436601 R 883 CDS YP_002434797.1 218885476 7172256 complement(439453..440010) 1 NC_011769.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 440010 7172256 DvMF_0372 Desulfovibrio vulgaris str. 'Miyazaki F' elongation factor P YP_002434797.1 439453 R 883 CDS YP_002434798.1 218885477 7172257 complement(440048..440527) 1 NC_011769.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 440527 7172257 DvMF_0373 Desulfovibrio vulgaris str. 'Miyazaki F' 3-dehydroquinate dehydratase YP_002434798.1 440048 R 883 CDS YP_002434799.1 218885478 7172258 440779..441543 1 NC_011769.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 441543 engB 7172258 engB Desulfovibrio vulgaris str. 'Miyazaki F' ribosome biogenesis GTP-binding protein YsxC YP_002434799.1 440779 D 883 CDS YP_002434800.1 218885479 7172259 complement(441731..442816) 1 NC_011769.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease; YjgP/YjgQ family permease 442816 7172259 DvMF_0375 Desulfovibrio vulgaris str. 'Miyazaki F' YjgP/YjgQ family permease YP_002434800.1 441731 R 883 CDS YP_002434801.1 218885480 7172260 complement(442813..443952) 1 NC_011769.1 PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease; YjgP/YjgQ family permease 443952 7172260 DvMF_0376 Desulfovibrio vulgaris str. 'Miyazaki F' YjgP/YjgQ family permease YP_002434801.1 442813 R 883 CDS YP_002434802.1 218885481 7172261 complement(444005..444202) 1 NC_011769.1 KEGG: sfu:Sfum_0324 hypothetical protein; hypothetical protein 444202 7172261 DvMF_0377 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434802.1 444005 R 883 CDS YP_002434803.1 218885482 7172262 444480..445277 1 NC_011769.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 445277 7172262 DvMF_0378 Desulfovibrio vulgaris str. 'Miyazaki F' undecaprenyl pyrophosphate phosphatase YP_002434803.1 444480 D 883 CDS YP_002434804.1 218885483 7172264 445762..447087 1 NC_011769.1 PFAM: natural resistance-associated macrophage protein; KEGG: tpd:Teth39_1570 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 447087 7172264 DvMF_0379 Desulfovibrio vulgaris str. 'Miyazaki F' natural resistance-associated macrophage protein YP_002434804.1 445762 D 883 CDS YP_002434805.1 218885484 7172265 447301..447816 1 NC_011769.1 KEGG: dde:Dde_1072 hypothetical protein; hypothetical protein 447816 7172265 DvMF_0380 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434805.1 447301 D 883 CDS YP_002434806.1 218885485 7172266 complement(448283..449803) 1 NC_011769.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; citrate transporter; Na+/H+ antiporter NhaC; KEGG: dde:Dde_1074 L-lactate transport; L-lactate transport 449803 7172266 DvMF_0381 Desulfovibrio vulgaris str. 'Miyazaki F' L-lactate transport YP_002434806.1 448283 R 883 CDS YP_002434807.1 218885486 7172267 complement(450195..450878) 1 NC_011769.1 TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: dde:Dde_2385 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 450878 7172267 DvMF_0382 Desulfovibrio vulgaris str. 'Miyazaki F' phosphate uptake regulator PhoU YP_002434807.1 450195 R 883 CDS YP_002434808.1 218885487 7172268 complement(451151..451633) 1 NC_011769.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 451633 greA 7172268 greA Desulfovibrio vulgaris str. 'Miyazaki F' transcription elongation factor GreA YP_002434808.1 451151 R 883 CDS YP_002434809.1 218885488 7172269 452058..452252 1 NC_011769.1 hypothetical protein 452252 7172269 DvMF_0384 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434809.1 452058 D 883 CDS YP_002434810.1 218885489 7172270 complement(452379..452804) 1 NC_011769.1 hypothetical protein 452804 7172270 DvMF_0385 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434810.1 452379 R 883 CDS YP_002434811.1 218885490 7172271 453068..453691 1 NC_011769.1 KEGG: dde:Dde_1940 hypothetical protein; hypothetical protein 453691 7172271 DvMF_0386 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434811.1 453068 D 883 CDS YP_002434812.1 218885491 7172273 complement(454678..455457) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_06937 amino acid ABC transporter periplasmic protein; family 3 extracellular solute-binding protein 455457 7172273 DvMF_0387 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002434812.1 454678 R 883 CDS YP_002434813.1 218885492 7172274 456118..456942 1 NC_011769.1 KEGG: gsu:GSU1295 hypothetical protein; hypothetical protein 456942 7172274 DvMF_0388 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434813.1 456118 D 883 CDS YP_002434814.1 218885493 7172275 457193..458038 1 NC_011769.1 PFAM: penicillin-binding protein transpeptidase; KEGG: rfe:RF_1275 beta-lactamase class D; beta-lactamase 458038 7172275 DvMF_0389 Desulfovibrio vulgaris str. 'Miyazaki F' beta-lactamase YP_002434814.1 457193 D 883 CDS YP_002434815.1 218885494 7172276 complement(458306..459697) 1 NC_011769.1 KEGG: dde:Dde_1847 hypothetical protein; hypothetical protein 459697 7172276 DvMF_0390 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434815.1 458306 R 883 CDS YP_002434816.1 218885495 7172277 complement(460009..460665) 1 NC_011769.1 PFAM: carbonic anhydrase; KEGG: gsu:GSU2307 carbonic anhydrase; carbonate dehydratase 460665 7172277 DvMF_0391 Desulfovibrio vulgaris str. 'Miyazaki F' carbonate dehydratase YP_002434816.1 460009 R 883 CDS YP_002434817.1 218885496 7172278 complement(460888..463176) 1 NC_011769.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_3821 cache sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 463176 7172278 DvMF_0392 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor hybrid histidine kinase YP_002434817.1 460888 R 883 CDS YP_002434818.1 218885497 7172279 complement(463546..464997) 1 NC_011769.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: aba:acid345_2245 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 464997 7172279 DvMF_0393 Desulfovibrio vulgaris str. 'Miyazaki F' cation diffusion facilitator family transporter YP_002434818.1 463546 R 883 CDS YP_002434819.1 218885498 7172280 complement(465303..465671) 1 NC_011769.1 PFAM: protein of unknown function DUF1653; KEGG: lch:Lcho_0448 protein of unknown function DUF1653; hypothetical protein 465671 7172280 DvMF_0394 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434819.1 465303 R 883 CDS YP_002434820.1 218885499 7172281 complement(465810..466466) 1 NC_011769.1 PFAM: protein of unknown function DUF162; KEGG: rru:Rru_A1411 protein of unknown function DUF162; hypothetical protein 466466 7172281 DvMF_0395 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434820.1 465810 R 883 CDS YP_002434821.1 218885500 7172282 complement(466459..467886) 1 NC_011769.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: dde:Dde_1843 iron-sulfur cluster binding protein; iron-sulfur cluster binding protein 467886 7172282 DvMF_0396 Desulfovibrio vulgaris str. 'Miyazaki F' iron-sulfur cluster binding protein YP_002434821.1 466459 R 883 CDS YP_002434822.1 218885501 7172283 complement(467879..468640) 1 NC_011769.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1842 hypothetical protein; hypothetical protein 468640 7172283 DvMF_0397 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434822.1 467879 R 883 CDS YP_002434823.1 218885502 7172284 469064..469867 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dde:Dde_1841 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR 469867 7172284 DvMF_0398 Desulfovibrio vulgaris str. 'Miyazaki F' short-chain dehydrogenase/reductase SDR YP_002434823.1 469064 D 883 CDS YP_002434824.1 218885503 7172285 470028..470630 1 NC_011769.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_1840 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 470630 7172285 DvMF_0399 Desulfovibrio vulgaris str. 'Miyazaki F' multiple antibiotic resistance (MarC)-like protein YP_002434824.1 470028 D 883 CDS YP_002434825.1 218885504 7172286 complement(471023..471763) 1 NC_011769.1 KEGG: dde:Dde_2065 lipoprotein; lipoprotein 471763 7172286 DvMF_0400 Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein YP_002434825.1 471023 R 883 CDS YP_002434826.1 218885505 7172287 complement(471756..472679) 1 NC_011769.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2066 thioredoxin reductase (NADPH); thioredoxin-disulfide reductase 472679 7172287 DvMF_0401 Desulfovibrio vulgaris str. 'Miyazaki F' thioredoxin-disulfide reductase YP_002434826.1 471756 R 883 CDS YP_002434827.1 218885506 7172288 complement(472681..473004) 1 NC_011769.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: dde:Dde_2067 thioredoxin; thioredoxin 473004 7172288 DvMF_0402 Desulfovibrio vulgaris str. 'Miyazaki F' thioredoxin YP_002434827.1 472681 R 883 CDS YP_002434828.1 218885507 7172289 complement(473238..474485) 1 NC_011769.1 KEGG: dde:Dde_2068 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 474485 7172289 DvMF_0403 Desulfovibrio vulgaris str. 'Miyazaki F' glycoprotease family metalloendopeptidase YP_002434828.1 473238 R 883 CDS YP_002434829.1 218885508 7172290 complement(474710..475723) 1 NC_011769.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 475723 7172290 DvMF_0404 Desulfovibrio vulgaris str. 'Miyazaki F' fructose-1,6-bisphosphatase YP_002434829.1 474710 R 883 CDS YP_002434830.1 218885509 7172291 complement(475875..476840) 1 NC_011769.1 KEGG: dde:Dde_2070 hypothetical protein; hypothetical protein 476840 7172291 DvMF_0405 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434830.1 475875 R 883 CDS YP_002434831.1 218885510 7172292 complement(476982..477947) 1 NC_011769.1 PFAM: hypothetical protein; KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein; hypothetical protein 477947 7172292 DvMF_0406 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434831.1 476982 R 883 CDS YP_002434832.1 218885511 7172293 complement(477931..478260) 1 NC_011769.1 PFAM: septum formation initiator; KEGG: dde:Dde_2072 cell division protein FtsB; septum formation initiator 478260 7172293 DvMF_0407 Desulfovibrio vulgaris str. 'Miyazaki F' septum formation initiator YP_002434832.1 477931 R 883 CDS YP_002434833.1 218885512 7172294 complement(478266..478538) 1 NC_011769.1 KEGG: dde:Dde_2073 hypothetical protein; hypothetical protein 478538 7172294 DvMF_0408 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434833.1 478266 R 883 CDS YP_002434834.1 218885513 7172295 complement(478575..479162) 1 NC_011769.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dde:Dde_2074 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 479162 7172295 DvMF_0409 Desulfovibrio vulgaris str. 'Miyazaki F' CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_002434834.1 478575 R 883 CDS YP_002434835.1 218885514 7172296 complement(479356..480252) 1 NC_011769.1 PFAM: Mrp protein; KEGG: dde:Dde_2075 hypothetical protein; Mrp protein 480252 7172296 DvMF_0410 Desulfovibrio vulgaris str. 'Miyazaki F' Mrp protein YP_002434835.1 479356 R 883 CDS YP_002434836.1 218885515 7172297 complement(480455..481042) 1 NC_011769.1 PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_2076 hypothetical protein; hypothetical protein 481042 7172297 DvMF_0411 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434836.1 480455 R 883 CDS YP_002434837.1 218885516 7172298 complement(481260..481907) 1 NC_011769.1 KEGG: dde:Dde_2077 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 481907 7172298 DvMF_0412 Desulfovibrio vulgaris str. 'Miyazaki F' protein-L-isoaspartate O-methyltransferase YP_002434837.1 481260 R 883 CDS YP_002434838.1 218885517 7172299 482452..482880 1 NC_011769.1 PFAM: CBS domain containing protein; KEGG: dde:Dde_2078 CBS; signal transduction protein with CBS domains 482880 7172299 DvMF_0413 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction protein with CBS domains YP_002434838.1 482452 D 883 CDS YP_002434839.1 218885518 7172300 482956..484266 1 NC_011769.1 PFAM: peptidase M23; KEGG: dde:Dde_2079 M24/M37 family peptidase; peptidase M23 484266 7172300 DvMF_0414 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M23 YP_002434839.1 482956 D 883 CDS YP_002434840.1 218885519 7172301 complement(484548..484940) 1 NC_011769.1 PFAM: protein of unknown function DUF488; KEGG: gme:Gmet_0156 protein of unknown function DUF488; hypothetical protein 484940 7172301 DvMF_0415 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434840.1 484548 R 883 CDS YP_002434841.1 218885520 7172302 complement(485193..488771) 1 NC_011769.1 PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase; pyruvate phosphate dikinase 488771 7172302 DvMF_0416 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate phosphate dikinase YP_002434841.1 485193 R 883 CDS YP_002434842.1 218885521 7172303 complement(489026..492730) 1 NC_011769.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 492730 7172303 DvMF_0417 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate carboxylase YP_002434842.1 489026 R 883 CDS YP_002434843.1 218885522 7172304 complement(492816..493985) 1 NC_011769.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dde:Dde_2082 biotin--acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase 493985 7172304 DvMF_0418 Desulfovibrio vulgaris str. 'Miyazaki F' biotin--acetyl-CoA-carboxylase ligase YP_002434843.1 492816 R 883 CDS YP_002434844.1 218885523 7172305 494082..495497 1 NC_011769.1 KEGG: dde:Dde_2083 tRNA nucleotidyltransferase, PFAM: polynucleotide adenylyltransferase region; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 495497 7172305 DvMF_0419 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002434844.1 494082 D 883 CDS YP_002434845.1 218885524 7172306 complement(495720..496640) 1 NC_011769.1 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 496640 7172306 DvMF_0420 Desulfovibrio vulgaris str. 'Miyazaki F' manganese-dependent inorganic pyrophosphatase YP_002434845.1 495720 R 883 CDS YP_002434846.1 218885525 7172307 complement(496794..497363) 1 NC_011769.1 KEGG: dde:Dde_1777 hypothetical protein; hypothetical protein 497363 7172307 DvMF_0421 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434846.1 496794 R 883 CDS YP_002434847.1 218885526 7172308 complement(497493..497957) 1 NC_011769.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: dde:Dde_1776 PTS system, IIB component; PTS system sorbose subfamily transporter subunit IIB 497957 7172308 DvMF_0422 Desulfovibrio vulgaris str. 'Miyazaki F' PTS system sorbose subfamily transporter subunit IIB YP_002434847.1 497493 R 883 CDS YP_002434848.1 218885527 7172309 complement(497962..498480) 1 NC_011769.1 PFAM: PTS system fructose subfamily IIA component; KEGG: dde:Dde_1775 PTS system, IIA component; PTS system fructose subfamily transporter subunit IIA 498480 7172309 DvMF_0423 Desulfovibrio vulgaris str. 'Miyazaki F' PTS system fructose subfamily transporter subunit IIA YP_002434848.1 497962 R 883 CDS YP_002434849.1 218885528 7172310 complement(498728..499609) 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: dde:Dde_1774 hypothetical protein; hypothetical protein 499609 7172310 DvMF_0424 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434849.1 498728 R 883 CDS YP_002434850.1 218885529 7172311 complement(499989..500438) 1 NC_011769.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dde:Dde_1773 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 500438 7172311 DvMF_0425 Desulfovibrio vulgaris str. 'Miyazaki F' PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_002434850.1 499989 R 883 CDS YP_002434851.1 218885530 7172312 complement(500448..500993) 1 NC_011769.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dde:Dde_1772 SSU ribosomal protein S30P / sigma 54 modulation protein; sigma 54 modulation protein/ribosomal protein S30EA 500993 7172312 DvMF_0426 Desulfovibrio vulgaris str. 'Miyazaki F' sigma 54 modulation protein/ribosomal protein S30EA YP_002434851.1 500448 R 883 CDS YP_002434852.1 218885531 7172313 complement(501115..502548) 1 NC_011769.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: dde:Dde_1771 sigma-54 factor; RNA polymerase sigma 54 subunit RpoN 502548 7172313 DvMF_0427 Desulfovibrio vulgaris str. 'Miyazaki F' RNA polymerase sigma 54 subunit RpoN YP_002434852.1 501115 R 883 CDS YP_002434853.1 218885532 7172314 complement(502943..503668) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1770 ATPase; ABC transporter 503668 7172314 DvMF_0428 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002434853.1 502943 R 883 CDS YP_002434854.1 218885533 7172315 complement(503665..504339) 1 NC_011769.1 PFAM: OstA family protein; KEGG: dde:Dde_1769 hypothetical protein; OstA family protein 504339 7172315 DvMF_0429 Desulfovibrio vulgaris str. 'Miyazaki F' OstA family protein YP_002434854.1 503665 R 883 CDS YP_002434855.1 218885534 7172316 complement(504336..505145) 1 NC_011769.1 PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein; hypothetical protein 505145 7172316 DvMF_0430 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434855.1 504336 R 883 CDS YP_002434856.1 218885535 7172317 complement(505142..505669) 1 NC_011769.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: dde:Dde_1767 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 505669 7172317 DvMF_0431 Desulfovibrio vulgaris str. 'Miyazaki F' 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_002434856.1 505142 R 883 CDS YP_002434857.1 218885536 7172318 complement(505659..506471) 1 NC_011769.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 506471 7172318 DvMF_0432 Desulfovibrio vulgaris str. 'Miyazaki F' 2-dehydro-3-deoxyphosphooctonate aldolase YP_002434857.1 505659 R 883 CDS YP_002434858.1 218885537 7172319 complement(507089..508741) 1 NC_011769.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 508741 pyrG 7172319 pyrG Desulfovibrio vulgaris str. 'Miyazaki F' CTP synthetase YP_002434858.1 507089 R 883 CDS YP_002434859.1 218885538 7172320 509259..510068 1 NC_011769.1 KEGG: dde:Dde_1764 phosphoribosylformylglycinamidine synthase I; phosphoribosylformylglycinamidine synthase 510068 7172320 DvMF_0434 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosylformylglycinamidine synthase YP_002434859.1 509259 D 883 CDS YP_002434860.1 218885539 7172321 510355..510753 1 NC_011769.1 KEGG: dde:Dde_1763 hypothetical protein; hypothetical protein 510753 7172321 DvMF_0435 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434860.1 510355 D 883 CDS YP_002434861.1 218885540 7172322 510995..511432 1 NC_011769.1 KEGG: dde:Dde_1759 hypothetical protein; hypothetical protein 511432 7172322 DvMF_0436 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434861.1 510995 D 883 CDS YP_002434862.1 218885541 7172323 511693..514335 1 NC_011769.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: bph:Bphy_1097 magnesium-translocating P-type ATPase; magnesium-translocating P-type ATPase 514335 7172323 DvMF_0437 Desulfovibrio vulgaris str. 'Miyazaki F' magnesium-translocating P-type ATPase YP_002434862.1 511693 D 883 CDS YP_002434863.1 218885542 7172324 complement(514448..514726) 1 NC_011769.1 KEGG: dde:Dde_1758 hypothetical protein; hypothetical protein 514726 7172324 DvMF_0438 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434863.1 514448 R 883 CDS YP_002434864.1 218885543 7172325 complement(514727..516400) 1 NC_011769.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 516400 7172325 DvMF_0439 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoglyceromutase YP_002434864.1 514727 R 883 CDS YP_002434865.1 218885544 7172326 complement(516397..516984) 1 NC_011769.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: lip:LI1014 hypothetical protein; iojap family protein 516984 7172326 DvMF_0440 Desulfovibrio vulgaris str. 'Miyazaki F' iojap family protein YP_002434865.1 516397 R 883 CDS YP_002434866.1 218885545 7172327 complement(517207..517860) 1 NC_011769.1 PFAM: nitroreductase; KEGG: hmo:HM1_3019 nitroreductase family protein; nitroreductase 517860 7172327 DvMF_0441 Desulfovibrio vulgaris str. 'Miyazaki F' nitroreductase YP_002434866.1 517207 R 883 CDS YP_002434867.1 218885546 7172328 518327..519631 1 NC_011769.1 KEGG: dde:Dde_2084 phenylacetate-CoA ligase; phenylacetate--CoA ligase 519631 7172328 DvMF_0442 Desulfovibrio vulgaris str. 'Miyazaki F' phenylacetate--CoA ligase YP_002434867.1 518327 D 883 CDS YP_002434868.1 218885547 7172329 complement(519728..520174) 1 NC_011769.1 KEGG: bbt:BBta_5793 hypothetical protein; hypothetical protein 520174 7172329 DvMF_0443 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434868.1 519728 R 883 CDS YP_002434869.1 218885548 7172330 complement(520184..520546) 1 NC_011769.1 hypothetical protein 520546 7172330 DvMF_0444 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434869.1 520184 R 883 CDS YP_002434870.1 218885549 7172331 complement(520727..521233) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2085 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 521233 7172331 DvMF_0445 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002434870.1 520727 R 883 CDS YP_002434871.1 218885550 7172332 complement(521240..522331) 1 NC_011769.1 unknown function; probable involvement in glutamate synthesis; glutamate synthase subunit beta 522331 7172332 DvMF_0446 Desulfovibrio vulgaris str. 'Miyazaki F' glutamate synthase subunit beta YP_002434871.1 521240 R 883 CDS YP_002434872.1 218885551 7172333 522631..523062 1 NC_011769.1 PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_2088 ACT domain-containing protein; amino acid-binding ACT protein 523062 7172333 DvMF_0447 Desulfovibrio vulgaris str. 'Miyazaki F' amino acid-binding ACT protein YP_002434872.1 522631 D 883 CDS YP_002434873.1 218885552 7172334 523352..525337 1 NC_011769.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_3195 molybdopterin oxidoreductase; molybdopterin oxidoreductase 525337 7172334 DvMF_0448 Desulfovibrio vulgaris str. 'Miyazaki F' molybdopterin oxidoreductase YP_002434873.1 523352 D 883 CDS YP_002434874.1 218885553 7172335 complement(525570..527240) 1 NC_011769.1 KEGG: dde:Dde_2091 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; NAD+ synthetase 527240 7172335 DvMF_0449 Desulfovibrio vulgaris str. 'Miyazaki F' NAD+ synthetase YP_002434874.1 525570 R 883 CDS YP_002434875.1 218885554 7172336 complement(527519..528298) 1 NC_011769.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 528298 7172336 DvMF_0450 Desulfovibrio vulgaris str. 'Miyazaki F' dihydrodipicolinate reductase YP_002434875.1 527519 R 883 CDS YP_002434876.1 218885555 7172337 complement(528382..530808) 1 NC_011769.1 KEGG: dde:Dde_2093 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: DNA-binding protein; NAD-dependent DNA ligase; NAD-dependent DNA ligase 530808 7172337 DvMF_0451 Desulfovibrio vulgaris str. 'Miyazaki F' NAD-dependent DNA ligase YP_002434876.1 528382 R 883 CDS YP_002434877.1 218885556 7172338 complement(530805..531647) 1 NC_011769.1 KEGG: dde:Dde_2094 hypothetical protein; hypothetical protein 531647 7172338 DvMF_0452 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434877.1 530805 R 883 CDS YP_002434878.1 218885557 7172339 complement(531644..532684) 1 NC_011769.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; ion transport 2 domain protein; KEGG: dde:Dde_2095 TrkA family potassium uptake protein; TrkA-N domain-containing protein 532684 7172339 DvMF_0453 Desulfovibrio vulgaris str. 'Miyazaki F' TrkA-N domain-containing protein YP_002434878.1 531644 R 883 CDS YP_002434879.1 218885558 7172340 complement(532901..534943) 1 NC_011769.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-subunit beta is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 534943 7172340 DvMF_0454 Desulfovibrio vulgaris str. 'Miyazaki F' excinuclease ABC subunit B YP_002434879.1 532901 R 883 CDS YP_002434880.1 218885559 7172341 535265..535786 1 NC_011769.1 KEGG: dde:Dde_2097 hypothetical protein; hypothetical protein 535786 7172341 DvMF_0455 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434880.1 535265 D 883 CDS YP_002434881.1 218885560 7172342 535850..535969 1 NC_011769.1 hypothetical protein 535969 7172342 DvMF_0456 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434881.1 535850 D 883 CDS YP_002434882.1 218885561 7172343 complement(536001..536834) 1 NC_011769.1 KEGG: ank:AnaeK_0840 leucyl/phenylalanyl-tRNA/protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 536834 7172343 DvMF_0457 Desulfovibrio vulgaris str. 'Miyazaki F' leucyl/phenylalanyl-tRNA/protein transferase YP_002434882.1 536001 R 883 CDS YP_002434883.1 218885562 7172344 complement(536831..539281) 1 NC_011769.1 KEGG: dde:Dde_2099 ATPase; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA; ATP-dependent Clp protease ATP-binding subunit clpA; SMART: ATPase AAA; ATP-dependent Clp protease ATP-binding subunit clpA 539281 7172344 DvMF_0458 Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent Clp protease ATP-binding subunit clpA YP_002434883.1 536831 R 883 CDS YP_002434884.1 218885563 7172345 complement(539283..539585) 1 NC_011769.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dde:Dde_2100 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 539585 7172345 DvMF_0459 Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent Clp protease adaptor protein ClpS YP_002434884.1 539283 R 883 CDS YP_002434885.1 218885564 7172346 complement(540063..540740) 1 NC_011769.1 PFAM: adenylate cyclase; KEGG: dde:Dde_2101 adenylate cyclase; adenylate cyclase 540740 7172346 DvMF_0460 Desulfovibrio vulgaris str. 'Miyazaki F' adenylate cyclase YP_002434885.1 540063 R 883 CDS YP_002434886.1 218885565 7172347 540863..541237 1 NC_011769.1 PFAM: Camphor resistance CrcB protein; KEGG: dde:Dde_2102 camphor resistance protein CrcB; camphor resistance protein CrcB 541237 7172347 DvMF_0461 Desulfovibrio vulgaris str. 'Miyazaki F' camphor resistance protein CrcB YP_002434886.1 540863 D 883 CDS YP_002434887.1 218885566 7172348 541348..541743 1 NC_011769.1 PFAM: protein of unknown function DUF190; KEGG: dde:Dde_2103 hypothetical protein; hypothetical protein 541743 7172348 DvMF_0462 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434887.1 541348 D 883 CDS YP_002434888.1 218885567 7172349 complement(541806..542342) 1 NC_011769.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bph:Bphy_6404 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 542342 7172349 DvMF_0463 Desulfovibrio vulgaris str. 'Miyazaki F' N-acetyltransferase GCN5 YP_002434888.1 541806 R 883 CDS YP_002434889.1 218885568 7172350 complement(542477..543154) 1 NC_011769.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mem:Memar_1210 nitrite and sulphite reductase 4Fe-4S region; nitrite and sulfite reductase 4Fe-4S region 543154 7172350 DvMF_0464 Desulfovibrio vulgaris str. 'Miyazaki F' nitrite and sulfite reductase 4Fe-4S region YP_002434889.1 542477 R 883 CDS YP_002434890.1 218885569 7172351 complement(543275..544345) 1 NC_011769.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_2104 response regulator receiver domain-containing protein; response regulator receiver modulated CheB methylesterase 544345 7172351 DvMF_0465 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver modulated CheB methylesterase YP_002434890.1 543275 R 883 CDS YP_002434891.1 218885570 7172352 complement(544342..545229) 1 NC_011769.1 PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_2105 MCP methyltransferase, CheR-type; chemotaxis protein CheR 545229 7172352 DvMF_0466 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheR YP_002434891.1 544342 R 883 CDS YP_002434892.1 218885571 7172353 complement(545226..547400) 1 NC_011769.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_2106 chemotaxis protein CheA; chemotaxis protein CheA 547400 7172353 DvMF_0467 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheA YP_002434892.1 545226 R 883 CDS YP_002434893.1 218885572 7172354 complement(547978..548340) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_2107 response regulator receiver domain-containing protein; response regulator receiver protein 548340 7172354 DvMF_0468 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002434893.1 547978 R 883 CDS YP_002434894.1 218885573 7172355 complement(548535..550361) 1 NC_011769.1 KEGG: dde:Dde_2108 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 550361 7172355 DvMF_0469 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002434894.1 548535 R 883 CDS YP_002434895.1 218885574 7172356 complement(550733..552838) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: dde:Dde_1752 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 552838 7172356 DvMF_0470 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_002434895.1 550733 R 883 CDS YP_002434896.1 218885575 7172357 complement(553249..554727) 1 NC_011769.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 554727 7172357 DvMF_0471 Desulfovibrio vulgaris str. 'Miyazaki F' DNA repair protein RadA YP_002434896.1 553249 R 883 CDS YP_002434897.1 218885576 7172358 complement(554737..555705) 1 NC_011769.1 KEGG: dde:Dde_2111 hypothetical protein; hypothetical protein 555705 7172358 DvMF_0472 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434897.1 554737 R 883 CDS YP_002434898.1 218885577 7172359 complement(555775..556314) 1 NC_011769.1 KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 556314 7172359 DvMF_0473 Desulfovibrio vulgaris str. 'Miyazaki F' hypoxanthine phosphoribosyltransferase YP_002434898.1 555775 R 883 CDS YP_002434899.1 218885578 7172360 complement(556483..556950) 1 NC_011769.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase 556950 7172360 DvMF_0474 Desulfovibrio vulgaris str. 'Miyazaki F' acetyltransferase YP_002434899.1 556483 R 883 CDS YP_002434900.1 218885579 7172361 complement(556951..557424) 1 NC_011769.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_2114 thioredoxin family protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 557424 7172361 DvMF_0475 Desulfovibrio vulgaris str. 'Miyazaki F' alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_002434900.1 556951 R 883 CDS YP_002434901.1 218885580 7172362 complement(557642..560098) 1 NC_011769.1 PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dde:Dde_2115 methionine synthase (B12-dependent); homocysteine S-methyltransferase 560098 7172362 DvMF_0476 Desulfovibrio vulgaris str. 'Miyazaki F' homocysteine S-methyltransferase YP_002434901.1 557642 R 883 CDS YP_002434902.1 218885581 7172363 560337..561761 1 NC_011769.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: dde:Dde_2116 sigma 70 family protein; RNA polymerase sigma 70 family subunit 561761 7172363 DvMF_0477 Desulfovibrio vulgaris str. 'Miyazaki F' RNA polymerase sigma 70 family subunit YP_002434902.1 560337 D 883 CDS YP_002434903.1 218885582 7172364 561797..563596 1 NC_011769.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_2117 hypothetical protein; hypothetical protein 563596 7172364 DvMF_0478 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434903.1 561797 D 883 CDS YP_002434904.1 218885583 7172365 563596..564486 1 NC_011769.1 KEGG: dde:Dde_2118 hypothetical protein; hypothetical protein 564486 7172365 DvMF_0479 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434904.1 563596 D 883 CDS YP_002434905.1 218885584 7172366 564724..565107 1 NC_011769.1 KEGG: dde:Dde_2119 hypothetical protein; hypothetical protein 565107 7172366 DvMF_0480 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434905.1 564724 D 883 CDS YP_002434906.1 218885585 7172367 565376..565828 1 NC_011769.1 KEGG: dde:Dde_2120 ribose-5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase 565828 7172367 DvMF_0481 Desulfovibrio vulgaris str. 'Miyazaki F' RpiB/LacA/LacB family sugar-phosphate isomerase YP_002434906.1 565376 D 883 CDS YP_002434907.1 218885586 7172368 565960..567417 1 NC_011769.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 567417 cysS 7172368 cysS Desulfovibrio vulgaris str. 'Miyazaki F' cysteinyl-tRNA synthetase YP_002434907.1 565960 D 883 CDS YP_002434908.1 218885587 7172369 567426..568898 1 NC_011769.1 PFAM: hypothetical protein; peptidase M48 Ste24p; SMART: hypothetical protein; KEGG: dde:Dde_2122 TPR repeat-containing protein; peptidase M48 Ste24p 568898 7172369 DvMF_0483 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M48 Ste24p YP_002434908.1 567426 D 883 CDS YP_002434909.1 218885588 7172370 569014..569622 1 NC_011769.1 PFAM: Appr-1-p processing domain protein; KEGG: ank:AnaeK_0859 Appr-1-p processing domain protein; Appr-1-p processing protein 569622 7172370 DvMF_0484 Desulfovibrio vulgaris str. 'Miyazaki F' Appr-1-p processing protein YP_002434909.1 569014 D 883 CDS YP_002434910.1 218885589 7172371 569723..570280 1 NC_011769.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 570280 7172371 DvMF_0485 Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent protease peptidase subunit YP_002434910.1 569723 D 883 CDS YP_002434911.1 218885590 7172372 570277..571266 1 NC_011769.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 571266 7172372 DvMF_0486 Desulfovibrio vulgaris str. 'Miyazaki F' 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_002434911.1 570277 D 883 CDS YP_002434912.1 218885591 7172374 571455..572393 1 NC_011769.1 KEGG: dde:Dde_2126 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 572393 7172374 DvMF_0487 Desulfovibrio vulgaris str. 'Miyazaki F' ribose-phosphate pyrophosphokinase YP_002434912.1 571455 D 883 CDS YP_002434913.1 218885592 7172375 572455..573030 1 NC_011769.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 573030 7172375 DvMF_0488 Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L25/general stress protein Ctc YP_002434913.1 572455 D 883 CDS YP_002434914.1 218885593 7172376 573337..573945 1 NC_011769.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 573945 7172376 DvMF_0489 Desulfovibrio vulgaris str. 'Miyazaki F' peptidyl-tRNA hydrolase YP_002434914.1 573337 D 883 CDS YP_002434915.1 218885594 7172377 574299..574814 1 NC_011769.1 PFAM: transcription factor CarD; KEGG: dde:Dde_2129 CarD family transcriptional regulator; CarD family transcriptional regulator 574814 7172377 DvMF_0490 Desulfovibrio vulgaris str. 'Miyazaki F' CarD family transcriptional regulator YP_002434915.1 574299 D 883 CDS YP_002434916.1 218885595 7172378 575162..576412 1 NC_011769.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 576412 rho 7172378 rho Desulfovibrio vulgaris str. 'Miyazaki F' transcription termination factor Rho YP_002434916.1 575162 D 883 CDS YP_002434917.1 218885596 7172379 complement(576558..578495) 1 NC_011769.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pna:Pnap_4517 bilirubin oxidase; multicopper oxidase type 2 578495 7172379 DvMF_0492 Desulfovibrio vulgaris str. 'Miyazaki F' multicopper oxidase type 2 YP_002434917.1 576558 R 883 CDS YP_002434918.1 218885597 7172380 complement(578804..579874) 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2050 diguanylate cyclase; diguanylate cyclase 579874 7172380 DvMF_0493 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002434918.1 578804 R 883 CDS YP_002434919.1 218885598 7172381 complement(580069..581841) 1 NC_011769.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: dde:Dde_2052 sigma-70 factor; RpoD subfamily RNA polymerase sigma-70 subunit 581841 7172381 DvMF_0494 Desulfovibrio vulgaris str. 'Miyazaki F' RpoD subfamily RNA polymerase sigma-70 subunit YP_002434919.1 580069 R 883 CDS YP_002434920.1 218885599 7172382 complement(581834..583633) 1 NC_011769.1 KEGG: dde:Dde_2053 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase 583633 7172382 DvMF_0495 Desulfovibrio vulgaris str. 'Miyazaki F' DNA primase YP_002434920.1 581834 R 883 CDS YP_002434921.1 218885600 7172383 complement(583728..586181) 1 NC_011769.1 PFAM: DNA mismatch repair protein MutS; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: dde:Dde_2054 DNA mismatch repair protein MutS-like; Smr protein/MutS2 586181 7172383 DvMF_0496 Desulfovibrio vulgaris str. 'Miyazaki F' Smr protein/MutS2 YP_002434921.1 583728 R 883 CDS YP_002434922.1 218885601 7172384 complement(586190..586636) 1 NC_011769.1 KEGG: dde:Dde_2055 GatB/YqeY family protein; GatB/YqeY family protein 586636 7172384 DvMF_0497 Desulfovibrio vulgaris str. 'Miyazaki F' GatB/YqeY family protein YP_002434922.1 586190 R 883 CDS YP_002434923.1 218885602 7172385 complement(586768..586971) 1 NC_011769.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 586971 rpsU 7172385 rpsU Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S21 YP_002434923.1 586768 R 883 CDS YP_002434924.1 218885603 7172386 complement(587167..587355) 1 NC_011769.1 KEGG: dde:Dde_2057 hypothetical protein; hypothetical protein 587355 7172386 DvMF_0499 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434924.1 587167 R 883 CDS YP_002434925.1 218885604 7172387 complement(587371..587643) 1 NC_011769.1 PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_2058 histone-like DNA-binding protein; histone family protein DNA-binding protein 587643 7172387 DvMF_0500 Desulfovibrio vulgaris str. 'Miyazaki F' histone family protein DNA-binding protein YP_002434925.1 587371 R 883 CDS YP_002434926.1 218885605 7172388 complement(587835..588647) 1 NC_011769.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 588647 ksgA 7172388 ksgA Desulfovibrio vulgaris str. 'Miyazaki F' dimethyladenosine transferase YP_002434926.1 587835 R 883 CDS YP_002434927.1 218885606 7172389 complement(588845..589477) 1 NC_011769.1 KEGG: dde:Dde_2062 hypothetical protein; hypothetical protein 589477 7172389 DvMF_0502 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434927.1 588845 R 883 CDS YP_002434928.1 218885607 7172390 complement(589535..591631) 1 NC_011769.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 591631 7172390 DvMF_0503 Desulfovibrio vulgaris str. 'Miyazaki F' elongation factor G YP_002434928.1 589535 R 883 CDS YP_002434929.1 218885608 7172391 complement(591765..592781) 1 NC_011769.1 KEGG: dde:Dde_2064 hypothetical protein; hypothetical protein 592781 7172391 DvMF_0504 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434929.1 591765 R 883 CDS YP_002434930.1 218885609 7172392 complement(592953..594203) 1 NC_011769.1 KEGG: dde:Dde_1838 hypothetical protein; hypothetical protein 594203 7172392 DvMF_0505 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434930.1 592953 R 883 CDS YP_002434931.1 218885610 7172393 594654..595739 1 NC_011769.1 PFAM: PGAP1 family protein; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like; PGAP1 family protein 595739 7172393 DvMF_0506 Desulfovibrio vulgaris str. 'Miyazaki F' PGAP1 family protein YP_002434931.1 594654 D 883 CDS YP_002434932.1 218885611 7172394 complement(595724..596998) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1836 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 596998 7172394 DvMF_0507 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002434932.1 595724 R 883 CDS YP_002434933.1 218885612 7172395 complement(596995..598908) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1835 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 598908 7172395 DvMF_0508 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002434933.1 596995 R 883 CDS YP_002434934.1 218885613 7172396 599259..600755 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1834 diguanylate cyclase; diguanylate cyclase 600755 7172396 DvMF_0509 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002434934.1 599259 D 883 CDS YP_002434935.1 218885614 7172397 complement(600918..601412) 1 NC_011769.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: glo:Glov_3529 C_GCAxxG_C_C family protein; C_GCAxxG_C_C family protein 601412 7172397 DvMF_0510 Desulfovibrio vulgaris str. 'Miyazaki F' C_GCAxxG_C_C family protein YP_002434935.1 600918 R 883 CDS YP_002434936.1 218885615 7172398 601559..603658 1 NC_011769.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfu:Sfum_1907 LysR family transcriptional regulator; LysR family transcriptional regulator 603658 7172398 DvMF_0511 Desulfovibrio vulgaris str. 'Miyazaki F' LysR family transcriptional regulator YP_002434936.1 601559 D 883 CDS YP_002434937.1 218885616 7172399 604017..604727 1 NC_011769.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: dde:Dde_1833 hypothetical protein; hypothetical protein 604727 7172399 DvMF_0512 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434937.1 604017 D 883 CDS YP_002434938.1 218885617 7172400 complement(604864..605730) 1 NC_011769.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bce:BC4053 GntR family transcriptional regulator; GntR family transcriptional regulator 605730 7172400 DvMF_0513 Desulfovibrio vulgaris str. 'Miyazaki F' GntR family transcriptional regulator YP_002434938.1 604864 R 883 CDS YP_002434939.1 218885618 7172401 complement(605944..606786) 1 NC_011769.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 606786 7172401 DvMF_0514 Desulfovibrio vulgaris str. 'Miyazaki F' phosphonoacetaldehyde hydrolase YP_002434939.1 605944 R 883 CDS YP_002434940.1 218885619 7172402 complement(607079..608821) 1 NC_011769.1 catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase 608821 7172402 DvMF_0515 Desulfovibrio vulgaris str. 'Miyazaki F' sulfoacetaldehyde acetyltransferase YP_002434940.1 607079 R 883 CDS YP_002434941.1 218885620 7172403 609138..610517 1 NC_011769.1 PFAM: aminotransferase class-III; KEGG: dps:DP0541 aminotransferase; class III aminotransferase 610517 7172403 DvMF_0516 Desulfovibrio vulgaris str. 'Miyazaki F' class III aminotransferase YP_002434941.1 609138 D 883 CDS YP_002434942.1 218885621 7172404 610546..611655 1 NC_011769.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dde:Dde_1553 L-alanine dehydrogenase; alanine dehydrogenase 611655 7172404 DvMF_0517 Desulfovibrio vulgaris str. 'Miyazaki F' alanine dehydrogenase YP_002434942.1 610546 D 883 CDS YP_002434943.1 218885622 7172405 611846..612601 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mja:MJ0412 nitrate transporter protein (NrtC) homolog (CmpC); ABC transporter 612601 7172405 DvMF_0518 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002434943.1 611846 D 883 CDS YP_002434944.1 218885623 7172406 612678..613742 1 NC_011769.1 KEGG: vei:Veis_0768 ABC-type nitrate/sulfonate/bicarbonate transporters periplasmic components-like protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 613742 7172406 DvMF_0519 Desulfovibrio vulgaris str. 'Miyazaki F' nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein YP_002434944.1 612678 D 883 CDS YP_002434945.1 218885624 7172407 613812..614609 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rpt:Rpal_4641 binding-protein-dependent transport systems inner membrane component; ABC transporter inner membrane protein 614609 7172407 DvMF_0520 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter inner membrane protein YP_002434945.1 613812 D 883 CDS YP_002434946.1 218885625 7172408 614613..615491 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: vei:Veis_1108 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 615491 7172408 DvMF_0521 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002434946.1 614613 D 883 CDS YP_002434947.1 218885626 7172409 615628..616377 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mtp:Mthe_0218 ABC transporter; ABC transporter 616377 7172409 DvMF_0522 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002434947.1 615628 D 883 CDS YP_002434948.1 218885627 7172410 complement(616522..617925) 1 NC_011769.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: dde:Dde_1832 magnesium transporter; magnesium transporter 617925 7172410 DvMF_0523 Desulfovibrio vulgaris str. 'Miyazaki F' magnesium transporter YP_002434948.1 616522 R 883 CDS YP_002434949.1 218885628 7172411 618370..619278 1 NC_011769.1 KEGG: dde:Dde_1831 nicotinate-nucleotide pyrophosphorylase [carboxylating]; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 619278 7172411 DvMF_0524 Desulfovibrio vulgaris str. 'Miyazaki F' nicotinate-nucleotide pyrophosphorylase YP_002434949.1 618370 D 883 CDS YP_002434950.1 218885629 7172412 619280..620329 1 NC_011769.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 620329 7172412 DvMF_0525 Desulfovibrio vulgaris str. 'Miyazaki F' quinolinate synthetase YP_002434950.1 619280 D 883 CDS YP_002434951.1 218885630 7172413 620601..622193 1 NC_011769.1 KEGG: dde:Dde_1829 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; L-aspartate oxidase 622193 7172413 DvMF_0526 Desulfovibrio vulgaris str. 'Miyazaki F' L-aspartate oxidase YP_002434951.1 620601 D 883 CDS YP_002434952.1 218885631 7172414 complement(622429..623181) 1 NC_011769.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: wsu:WS0137 NCAIR mutase (PurE)-related protein; 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase 623181 7172414 DvMF_0527 Desulfovibrio vulgaris str. 'Miyazaki F' 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_002434952.1 622429 R 883 CDS YP_002434953.1 218885632 7172415 complement(623249..624748) 1 NC_011769.1 PFAM: protein of unknown function DUF111; KEGG: cbe:Cbei_0559 hypothetical protein; hypothetical protein 624748 7172415 DvMF_0528 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434953.1 623249 R 883 CDS YP_002434954.1 218885633 7172416 complement(624999..626201) 1 NC_011769.1 PFAM: aldo/keto reductase; KEGG: mbn:Mboo_0951 aldo/keto reductase; aldo/keto reductase 626201 7172416 DvMF_0529 Desulfovibrio vulgaris str. 'Miyazaki F' aldo/keto reductase YP_002434954.1 624999 R 883 CDS YP_002434955.1 218885634 7172417 626521..627399 1 NC_011769.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator; KEGG: dps:DP1867 transcription regulator (AraC-type); AraC family transcriptional regulator 627399 7172417 DvMF_0530 Desulfovibrio vulgaris str. 'Miyazaki F' AraC family transcriptional regulator YP_002434955.1 626521 D 883 CDS YP_002434956.1 218885635 7172418 complement(627559..627981) 1 NC_011769.1 KEGG: dde:Dde_1828 hypothetical protein; hypothetical protein 627981 7172418 DvMF_0531 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434956.1 627559 R 883 CDS YP_002434957.1 218885636 7172419 complement(628030..629070) 1 NC_011769.1 PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1827 protoheme IX farnesyltransferase; UbiA prenyltransferase 629070 7172419 DvMF_0532 Desulfovibrio vulgaris str. 'Miyazaki F' UbiA prenyltransferase YP_002434957.1 628030 R 883 CDS YP_002434958.1 218885637 7172420 complement(629143..630360) 1 NC_011769.1 TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; KEGG: dde:Dde_1826 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II 630360 7172420 DvMF_0533 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C oxidase subunit II YP_002434958.1 629143 R 883 CDS YP_002434959.1 218885638 7172421 complement(630367..630657) 1 NC_011769.1 TIGRFAM: caa(3)-type oxidase subunit IV; KEGG: dde:Dde_1825 Caa(3)-type oxidase subunit IV; caa(3)-type oxidase subunit IV 630657 7172421 DvMF_0534 Desulfovibrio vulgaris str. 'Miyazaki F' caa(3)-type oxidase subunit IV YP_002434959.1 630367 R 883 CDS YP_002434960.1 218885639 7172422 complement(630667..631263) 1 NC_011769.1 PFAM: cytochrome C oxidase subunit III; KEGG: dde:Dde_1824 cytochrome C oxidase subunit III; cytochrome C oxidase subunit III 631263 7172422 DvMF_0535 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C oxidase subunit III YP_002434960.1 630667 R 883 CDS YP_002434961.1 218885640 7172423 complement(631256..632881) 1 NC_011769.1 TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: dde:Dde_1823 cytochrome-c oxidase; cytochrome C oxidase subunit I 632881 7172423 DvMF_0536 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C oxidase subunit I YP_002434961.1 631256 R 883 CDS YP_002434962.1 218885641 7172424 complement(632964..634211) 1 NC_011769.1 KEGG: dde:Dde_1822 uncharacterized protein SCO1/SenC/PrrC; hypothetical protein 634211 7172424 DvMF_0537 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434962.1 632964 R 883 CDS YP_002434963.1 218885642 7172425 complement(634222..634530) 1 NC_011769.1 PFAM: cytochrome C class I; KEGG: dde:Dde_1821 cytochrome c-553; cytochrome C class I 634530 7172425 DvMF_0538 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C class I YP_002434963.1 634222 R 883 CDS YP_002434964.1 218885643 7172426 complement(634599..634925) 1 NC_011769.1 PFAM: cytochrome C class I; KEGG: dde:Dde_1821 cytochrome c-553; cytochrome C class I 634925 7172426 DvMF_0539 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C class I YP_002434964.1 634599 R 883 CDS YP_002434965.1 218885644 7172427 complement(635182..636267) 1 NC_011769.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 636267 secF 7172427 secF Desulfovibrio vulgaris str. 'Miyazaki F' preprotein translocase subunit SecF YP_002434965.1 635182 R 883 CDS YP_002434966.1 218885645 7172428 complement(636283..637881) 1 NC_011769.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 637881 secD 7172428 secD Desulfovibrio vulgaris str. 'Miyazaki F' preprotein translocase subunit SecD YP_002434966.1 636283 R 883 CDS YP_002434967.1 218885646 7172429 complement(638007..638408) 1 NC_011769.1 TIGRFAM: preprotein translocase subunit YajC; PFAM: YajC family protein; KEGG: dde:Dde_1817 protein translocase subunit YajC; preprotein translocase subunit YajC 638408 7172429 DvMF_0542 Desulfovibrio vulgaris str. 'Miyazaki F' preprotein translocase subunit YajC YP_002434967.1 638007 R 883 CDS YP_002434968.1 218885647 7172430 complement(638633..640528) 1 NC_011769.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: amu:Amuc_0711 sodium/hydrogen exchanger; sodium/hydrogen exchanger 640528 7172430 DvMF_0543 Desulfovibrio vulgaris str. 'Miyazaki F' sodium/hydrogen exchanger YP_002434968.1 638633 R 883 CDS YP_002434969.1 218885648 7172431 complement(640846..641691) 1 NC_011769.1 PFAM: glutamate synthase subunit alpha domain protein; KEGG: dde:Dde_1816 glutamate synthase (NADPH) GltB3 subunit; glutamate synthase subunit alpha domain-containing protein 641691 7172431 DvMF_0544 Desulfovibrio vulgaris str. 'Miyazaki F' glutamate synthase subunit alpha domain-containing protein YP_002434969.1 640846 R 883 CDS YP_002434970.1 218885649 7172432 complement(641688..642797) 1 NC_011769.1 PFAM: glutamine amidotransferase class-II; KEGG: dde:Dde_1815 glutamate synthase (NADPH) GltB1 subunit; glutamine amidotransferase 642797 7172432 DvMF_0545 Desulfovibrio vulgaris str. 'Miyazaki F' glutamine amidotransferase YP_002434970.1 641688 R 883 CDS YP_002434971.1 218885650 7172433 complement(643014..644537) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: dde:Dde_1814 glutamate synthase (NADPH) GltB2 subunit; glutamate synthase 644537 7172433 DvMF_0546 Desulfovibrio vulgaris str. 'Miyazaki F' glutamate synthase YP_002434971.1 643014 R 883 CDS YP_002434972.1 218885651 7172434 complement(644939..645748) 1 NC_011769.1 KEGG: dde:Dde_1813 carboxylesterase; carboxylesterase 645748 7172434 DvMF_0547 Desulfovibrio vulgaris str. 'Miyazaki F' carboxylesterase YP_002434972.1 644939 R 883 CDS YP_002434973.1 218885652 7172435 645845..647167 1 NC_011769.1 PFAM: amidohydrolase; amidohydrolase; KEGG: dde:Dde_1812 atrazine chlorohydrolase; Guanine deaminase 647167 7172435 DvMF_0548 Desulfovibrio vulgaris str. 'Miyazaki F' Guanine deaminase YP_002434973.1 645845 D 883 CDS YP_002434974.1 218885653 7172436 647304..647579 1 NC_011769.1 KEGG: dde:Dde_1811 hypothetical protein; hypothetical protein 647579 7172436 DvMF_0549 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434974.1 647304 D 883 CDS YP_002434975.1 218885654 7172437 647739..648968 1 NC_011769.1 catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate; diaminopimelate aminotransferase 648968 7172437 DvMF_0550 Desulfovibrio vulgaris str. 'Miyazaki F' diaminopimelate aminotransferase YP_002434975.1 647739 D 883 CDS YP_002434976.1 218885655 7172438 649036..650937 1 NC_011769.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 650937 7172438 DvMF_0551 Desulfovibrio vulgaris str. 'Miyazaki F' tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_002434976.1 649036 D 883 CDS YP_002434977.1 218885656 7172439 651285..652688 1 NC_011769.1 KEGG: dde:Dde_1808 hypothetical protein; hypothetical protein 652688 7172439 DvMF_0552 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434977.1 651285 D 883 CDS YP_002434978.1 218885657 7172440 652895..653716 1 NC_011769.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: dde:Dde_1807 CBS; hypothetical protein 653716 7172440 DvMF_0553 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434978.1 652895 D 883 CDS YP_002434979.1 218885658 7172441 654043..655611 1 NC_011769.1 transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 655611 lnt 7172441 lnt Desulfovibrio vulgaris str. 'Miyazaki F' apolipoprotein N-acyltransferase YP_002434979.1 654043 D 883 CDS YP_002434980.1 218885659 7172442 join(655655..655729,655731..656786) 1 NC_011769.1 KEGG: bpm:BURPS1710b_3602 hypothetical protein; peptide chain release factor 2 656786 7172442 DvMF_0555 Desulfovibrio vulgaris str. 'Miyazaki F' peptide chain release factor 2 YP_002434980.1 655655 D 883 CDS YP_002434981.1 218885660 7172443 656767..657711 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1801 diguanylate cyclase; diguanylate cyclase 657711 7172443 DvMF_0556 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002434981.1 656767 D 883 CDS YP_002434982.1 218885661 7172444 657736..658554 1 NC_011769.1 KEGG: dde:Dde_1800 flagellar synthesis regulator FleN; flagellar synthesis regulator FleN 658554 7172444 DvMF_0557 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar synthesis regulator FleN YP_002434982.1 657736 D 883 CDS YP_002434983.1 218885662 7172445 658770..659045 1 NC_011769.1 PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_1799 histone-like DNA-binding protein; histone family protein DNA-binding protein 659045 7172445 DvMF_0558 Desulfovibrio vulgaris str. 'Miyazaki F' histone family protein DNA-binding protein YP_002434983.1 658770 D 883 CDS YP_002434984.1 218885663 7172446 659202..659684 1 NC_011769.1 KEGG: aav:Aave_1289 collagen triple helix repeat; hypothetical protein 659684 7172446 DvMF_0559 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434984.1 659202 D 883 CDS YP_002434985.1 218885664 7172447 659724..660458 1 NC_011769.1 KEGG: ddsi:GD15658-PA; hypothetical protein 660458 7172447 DvMF_0560 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434985.1 659724 D 883 CDS YP_002434986.1 218885665 7172448 660511..661359 1 NC_011769.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 661359 dapF 7172448 dapF Desulfovibrio vulgaris str. 'Miyazaki F' diaminopimelate epimerase YP_002434986.1 660511 D 883 CDS YP_002434987.1 218885666 7172449 661492..662370 1 NC_011769.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 662370 7172449 DvMF_0562 Desulfovibrio vulgaris str. 'Miyazaki F' dihydrodipicolinate synthase YP_002434987.1 661492 D 883 CDS YP_002434988.1 218885667 7172450 662862..665171 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 665171 7172450 DvMF_0563 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_002434988.1 662862 D 883 CDS YP_002434989.1 218885668 7172451 complement(665274..666008) 1 NC_011769.1 PFAM: cyclase family protein; KEGG: dde:Dde_1664 cyclase; cyclase family protein 666008 7172451 DvMF_0564 Desulfovibrio vulgaris str. 'Miyazaki F' cyclase family protein YP_002434989.1 665274 R 883 CDS YP_002434990.1 218885669 7172452 complement(666005..667570) 1 NC_011769.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 667570 aspA 7172452 aspA Desulfovibrio vulgaris str. 'Miyazaki F' aspartate ammonia-lyase YP_002434990.1 666005 R 883 CDS YP_002434991.1 218885670 7172453 complement(667820..668419) 1 NC_011769.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cvi:CV_3185 peptidyl-prolyl cis-trans isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 668419 7172453 DvMF_0566 Desulfovibrio vulgaris str. 'Miyazaki F' cyclophilin type peptidyl-prolyl cis-trans isomerase YP_002434991.1 667820 R 883 CDS YP_002434992.1 218885671 7172454 complement(668868..671456) 1 NC_011769.1 KEGG: dde:Dde_1661 ATPase; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA-2 domain protein; SMART: ATPase AAA; ATP-dependent chaperone ClpB 671456 7172454 DvMF_0567 Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent chaperone ClpB YP_002434992.1 668868 R 883 CDS YP_002434993.1 218885672 7172455 complement(671653..672003) 1 NC_011769.1 KEGG: dde:Dde_1660 DafA protein; hypothetical protein 672003 7172455 DvMF_0568 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434993.1 671653 R 883 CDS YP_002434994.1 218885673 7172456 complement(672070..673026) 1 NC_011769.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dde:Dde_1659 heat shock protein DnaJ-like; chaperone DnaJ domain-containing protein 673026 7172456 DvMF_0569 Desulfovibrio vulgaris str. 'Miyazaki F' chaperone DnaJ domain-containing protein YP_002434994.1 672070 R 883 CDS YP_002434995.1 218885674 7172457 673401..674552 1 NC_011769.1 PFAM: polysaccharide deacetylase; KEGG: dde:Dde_1658 polysaccharide deacetylase family protein; polysaccharide deacetylase 674552 7172457 DvMF_0570 Desulfovibrio vulgaris str. 'Miyazaki F' polysaccharide deacetylase YP_002434995.1 673401 D 883 CDS YP_002434996.1 218885675 7172458 675004..676917 1 NC_011769.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bav:BAV1572 autotransporter; outer membrane autotransporter barrel domain-containing protein 676917 7172458 DvMF_0571 Desulfovibrio vulgaris str. 'Miyazaki F' outer membrane autotransporter barrel domain-containing protein YP_002434996.1 675004 D 883 CDS YP_002434997.1 218885676 7172459 complement(677145..678170) 1 NC_011769.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dde:Dde_1657 L-threonine aldolase; threonine aldolase 678170 7172459 DvMF_0572 Desulfovibrio vulgaris str. 'Miyazaki F' threonine aldolase YP_002434997.1 677145 R 883 CDS YP_002434998.1 218885677 7172460 complement(678450..679835) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 679835 7172460 DvMF_0573 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002434998.1 678450 R 883 CDS YP_002434999.1 218885678 7172461 complement(679886..680512) 1 NC_011769.1 KEGG: dde:Dde_1654 hypothetical protein; hypothetical protein 680512 7172461 DvMF_0574 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002434999.1 679886 R 883 CDS YP_002435000.1 218885679 7172462 681059..682054 1 NC_011769.1 PFAM: PhoH family protein; KEGG: dde:Dde_1653 PhoH family protein; PhoH family protein 682054 7172462 DvMF_0575 Desulfovibrio vulgaris str. 'Miyazaki F' PhoH family protein YP_002435000.1 681059 D 883 CDS YP_002435001.1 218885680 7172463 682080..684662 1 NC_011769.1 KEGG: dde:Dde_1652 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 684662 7172463 DvMF_0576 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002435001.1 682080 D 883 CDS YP_002435002.1 218885681 7172464 684669..685184 1 NC_011769.1 PFAM: protein of unknown function UPF0054; KEGG: dde:Dde_1651 hypothetical protein; hypothetical protein 685184 7172464 DvMF_0577 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435002.1 684669 D 883 CDS YP_002435003.1 218885682 7172465 complement(685398..686828) 1 NC_011769.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 686828 gatB 7172465 gatB Desulfovibrio vulgaris str. 'Miyazaki F' aspartyl/glutamyl-tRNA amidotransferase subunit B YP_002435003.1 685398 R 883 CDS YP_002435004.1 218885683 7172466 complement(687048..687716) 1 NC_011769.1 KEGG: dde:Dde_2616 hypothetical protein; hypothetical protein 687716 7172466 DvMF_0579 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435004.1 687048 R 883 CDS YP_002435005.1 218885684 7172467 complement(687737..689482) 1 NC_011769.1 KEGG: dde:Dde_2617 hypothetical protein; hypothetical protein 689482 7172467 DvMF_0580 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435005.1 687737 R 883 CDS YP_002435006.1 218885685 7172468 complement(689631..690482) 1 NC_011769.1 PFAM: ATP-NAD/AcoX kinase; KEGG: dde:Dde_2618 NAD(+) kinase; ATP-NAD/AcoX kinase 690482 7172468 DvMF_0581 Desulfovibrio vulgaris str. 'Miyazaki F' ATP-NAD/AcoX kinase YP_002435006.1 689631 R 883 CDS YP_002435007.1 218885686 7172469 690727..691353 1 NC_011769.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 691353 7172469 DvMF_0582 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoheptose isomerase YP_002435007.1 690727 D 883 CDS YP_002435008.1 218885687 7172470 691492..691728 1 NC_011769.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: dde:Dde_2620 hypothetical protein; FmdB family regulatory protein 691728 7172470 DvMF_0583 Desulfovibrio vulgaris str. 'Miyazaki F' FmdB family regulatory protein YP_002435008.1 691492 D 883 CDS YP_002435009.1 218885688 7172471 691772..692725 1 NC_011769.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 692725 hemC 7172471 hemC Desulfovibrio vulgaris str. 'Miyazaki F' porphobilinogen deaminase YP_002435009.1 691772 D 883 CDS YP_002435010.1 218885689 7172472 complement(692854..694632) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lip:LIC103 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 694632 7172472 DvMF_0585 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002435010.1 692854 R 883 CDS YP_002435011.1 218885690 7172473 complement(694753..695766) 1 NC_011769.1 PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0908 XRE family transcriptional regulator; XRE family transcriptional regulator 695766 7172473 DvMF_0586 Desulfovibrio vulgaris str. 'Miyazaki F' XRE family transcriptional regulator YP_002435011.1 694753 R 883 CDS YP_002435012.1 218885691 7172474 complement(696310..697458) 1 NC_011769.1 KEGG: dde:Dde_2623 hypothetical protein; hypothetical protein 697458 7172474 DvMF_0587 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435012.1 696310 R 883 CDS YP_002435013.1 218885692 7172475 complement(697455..698219) 1 NC_011769.1 KEGG: dde:Dde_2624 hypothetical protein; hypothetical protein 698219 7172475 DvMF_0588 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435013.1 697455 R 883 CDS YP_002435014.1 218885693 7172476 complement(698216..699343) 1 NC_011769.1 KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 699343 7172476 DvMF_0589 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002435014.1 698216 R 883 CDS YP_002435015.1 218885694 7172477 699737..702172 1 NC_011769.1 KEGG: dde:Dde_2626 ATP-dependent protease; ATP-dependent protease 702172 7172477 DvMF_0590 Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent protease YP_002435015.1 699737 D 883 CDS YP_002435016.1 218885695 7172478 complement(702486..702674) 1 NC_011769.1 hypothetical protein 702674 7172478 DvMF_0591 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435016.1 702486 R 883 CDS YP_002435017.1 218885696 7172479 702914..704065 1 NC_011769.1 PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein; major facilitator superfamily protein 704065 7172479 DvMF_0592 Desulfovibrio vulgaris str. 'Miyazaki F' major facilitator superfamily protein YP_002435017.1 702914 D 883 CDS YP_002435018.1 218885697 7172480 704411..705748 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4835 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 705748 7172480 DvMF_0593 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002435018.1 704411 D 883 CDS YP_002435019.1 218885698 7172481 complement(705892..706416) 1 NC_011769.1 TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dde:Dde_1646 peptidase C56, PfpI; PfpI family intracellular protease 706416 7172481 DvMF_0594 Desulfovibrio vulgaris str. 'Miyazaki F' PfpI family intracellular protease YP_002435019.1 705892 R 883 CDS YP_002435020.1 218885699 7172482 complement(706786..707580) 1 NC_011769.1 TIGRFAM: phosphonate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3724 phosphonate ABC transporter permease; phosphonate ABC transporter inner membrane protein 707580 7172482 DvMF_0595 Desulfovibrio vulgaris str. 'Miyazaki F' phosphonate ABC transporter inner membrane protein YP_002435020.1 706786 R 883 CDS YP_002435021.1 218885700 7172483 complement(707577..708365) 1 NC_011769.1 TIGRFAM: phosphonate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3725 phosphonate ABC transporter inner membrane protein; phosphonate ABC transporter inner membrane protein 708365 7172483 DvMF_0596 Desulfovibrio vulgaris str. 'Miyazaki F' phosphonate ABC transporter inner membrane protein YP_002435021.1 707577 R 883 CDS YP_002435022.1 218885701 7172484 complement(708362..709174) 1 NC_011769.1 KEGG: mrd:Mrad2831_4575 phosphonate ABC transporter ATPase; TIGRFAM: phosphonate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA; phosphonate ABC transporter ATPase 709174 7172484 DvMF_0597 Desulfovibrio vulgaris str. 'Miyazaki F' phosphonate ABC transporter ATPase YP_002435022.1 708362 R 883 CDS YP_002435023.1 218885702 7172485 complement(709435..710490) 1 NC_011769.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_3730 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 710490 7172485 DvMF_0598 Desulfovibrio vulgaris str. 'Miyazaki F' phosphonate ABC transporter periplasmic phosphonate-binding protein YP_002435023.1 709435 R 883 CDS YP_002435024.1 218885703 7172486 complement(710773..711540) 1 NC_011769.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: haloacid dehalogenase; KEGG: dde:Dde_3732 HAD family hydrolase; HAD-superfamily hydrolase 711540 7172486 DvMF_0599 Desulfovibrio vulgaris str. 'Miyazaki F' HAD-superfamily hydrolase YP_002435024.1 710773 R 883 CDS YP_002435025.1 218885704 7172487 712037..714088 1 NC_011769.1 TIGRFAM: degV family protein; PFAM: DegV family protein; Dak phosphatase; KEGG: dde:Dde_1644 DegV family protein; degV family protein 714088 7172487 DvMF_0600 Desulfovibrio vulgaris str. 'Miyazaki F' degV family protein YP_002435025.1 712037 D 883 CDS YP_002435026.1 218885705 7172488 714475..714708 1 NC_011769.1 KEGG: dde:Dde_1642 hypothetical protein; hypothetical protein 714708 7172488 DvMF_0601 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435026.1 714475 D 883 CDS YP_002435027.1 218885706 7172489 715226..715552 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_02497 ferridoxin; 4Fe-4S ferredoxin 715552 7172489 DvMF_0602 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002435027.1 715226 D 883 CDS YP_002435028.1 218885707 7172490 715557..716705 1 NC_011769.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1639 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha 716705 7172490 DvMF_0603 Desulfovibrio vulgaris str. 'Miyazaki F' 2-oxoglutarate ferredoxin oxidoreductase subunit alpha YP_002435028.1 715557 D 883 CDS YP_002435029.1 218885708 7172491 716713..717546 1 NC_011769.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 717546 7172491 DvMF_0604 Desulfovibrio vulgaris str. 'Miyazaki F' 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_002435029.1 716713 D 883 CDS YP_002435030.1 218885709 7172492 717543..718166 1 NC_011769.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_1637 2-oxoglutarate ferredoxin oxidoreductase, subunit gamma; pyruvate ferredoxin/flavodoxin oxidoreductase 718166 7172492 DvMF_0605 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate ferredoxin/flavodoxin oxidoreductase YP_002435030.1 717543 D 883 CDS YP_002435031.1 218885710 7172493 718381..718677 1 NC_011769.1 KEGG: dde:Dde_1636 hypothetical protein; hypothetical protein 718677 7172493 DvMF_0606 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435031.1 718381 D 883 CDS YP_002435032.1 218885711 7172494 complement(718921..719877) 1 NC_011769.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_3727 acetyltransferase, GNAT family; N-acetyltransferase GCN5 719877 7172494 DvMF_0607 Desulfovibrio vulgaris str. 'Miyazaki F' N-acetyltransferase GCN5 YP_002435032.1 718921 R 883 CDS YP_002435033.1 218885712 7172495 complement(720022..721605) 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: dde:Dde_1635 Fis family transcriptional regulator; Fis family transcriptional regulator 721605 7172495 DvMF_0608 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435033.1 720022 R 883 CDS YP_002435034.1 218885713 7172496 complement(721610..722215) 1 NC_011769.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sfu:Sfum_4076 pyruvate ferredoxin/flavodoxin oxidoreductase; indolepyruvate ferredoxin oxidoreductase 722215 7172496 DvMF_0609 Desulfovibrio vulgaris str. 'Miyazaki F' indolepyruvate ferredoxin oxidoreductase YP_002435034.1 721610 R 883 CDS YP_002435035.1 218885714 7172497 complement(722212..724101) 1 NC_011769.1 KEGG: sfu:Sfum_4075 thiamine pyrophosphate enzyme domain protein TPP-binding; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; indolepyruvate ferredoxin oxidoreductase subunit alpha 724101 7172497 DvMF_0610 Desulfovibrio vulgaris str. 'Miyazaki F' indolepyruvate ferredoxin oxidoreductase subunit alpha YP_002435035.1 722212 R 883 CDS YP_002435036.1 218885715 7172498 complement(724106..724801) 1 NC_011769.1 KEGG: dde:Dde_1634 hypothetical protein; hypothetical protein 724801 7172498 DvMF_0611 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435036.1 724106 R 883 CDS YP_002435037.1 218885716 7172499 725285..726595 1 NC_011769.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 726595 proA 7172499 proA Desulfovibrio vulgaris str. 'Miyazaki F' gamma-glutamyl phosphate reductase YP_002435037.1 725285 D 883 CDS YP_002435038.1 218885717 7172500 726751..727605 1 NC_011769.1 KEGG: dde:Dde_1632 nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 727605 7172500 DvMF_0613 Desulfovibrio vulgaris str. 'Miyazaki F' nicotinate (nicotinamide) nucleotide adenylyltransferase YP_002435038.1 726751 D 883 CDS YP_002435039.1 218885718 7172501 727596..728411 1 NC_011769.1 SMART: hypothetical protein; KEGG: dde:Dde_1630 hypothetical protein; hypothetical protein 728411 7172501 DvMF_0614 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435039.1 727596 D 883 CDS YP_002435040.1 218885719 7172502 complement(728607..729773) 1 NC_011769.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1629 heptosyltransferase family protein; glycosyl transferase family protein 729773 7172502 DvMF_0615 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002435040.1 728607 R 883 CDS YP_002435041.1 218885720 7172503 730088..732814 1 NC_011769.1 KEGG: dde:Dde_1165 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Cache type 2 domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 732814 7172503 DvMF_0616 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction histidine kinase, nitrogen specific, NtrB YP_002435041.1 730088 D 883 CDS YP_002435042.1 218885721 7172504 733173..735824 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 735824 7172504 DvMF_0617 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase/phosphodiesterase YP_002435042.1 733173 D 883 CDS YP_002435043.1 218885722 7172505 complement(736060..736821) 1 NC_011769.1 KEGG: ddse:GM16758-PA; hypothetical protein 736821 7172505 DvMF_0618 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435043.1 736060 R 883 CDS YP_002435044.1 218885723 7172506 complement(738048..740432) 1 NC_011769.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dol:Dole_0871 chemotaxis protein CheA; chemotaxis protein CheA 740432 7172506 DvMF_0619 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheA YP_002435044.1 738048 R 883 CDS YP_002435045.1 218885724 7172507 complement(740429..741067) 1 NC_011769.1 PFAM: CheW domain protein; KEGG: gur:Gura_2986 CheW protein; chemotaxis protein CheW 741067 7172507 DvMF_0620 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheW YP_002435045.1 740429 R 883 CDS YP_002435046.1 218885725 7172508 complement(741362..743545) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_1627 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 743545 7172508 DvMF_0621 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002435046.1 741362 R 883 CDS YP_002435047.1 218885726 7172509 complement(744174..744716) 1 NC_011769.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0235 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 744716 7172509 DvMF_0622 Desulfovibrio vulgaris str. 'Miyazaki F' BadM/Rrf2 family transcriptional regulator YP_002435047.1 744174 R 883 CDS YP_002435048.1 218885727 7172510 745468..746037 1 NC_011769.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0224 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 746037 7172510 DvMF_0623 Desulfovibrio vulgaris str. 'Miyazaki F' BadM/Rrf2 family transcriptional regulator YP_002435048.1 745468 D 883 CDS YP_002435049.1 218885728 7172511 746056..747297 1 NC_011769.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 747297 7172511 DvMF_0624 Desulfovibrio vulgaris str. 'Miyazaki F' FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002435049.1 746056 D 883 CDS YP_002435050.1 218885729 7172512 747311..748012 1 NC_011769.1 PFAM: protein of unknown function DUF1641; KEGG: dde:Dde_0222 hypothetical protein; hypothetical protein 748012 7172512 DvMF_0625 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435050.1 747311 D 883 CDS YP_002435051.1 218885730 7172513 748090..748476 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_0221 response regulator receiver domain-containing protein; response regulator receiver protein 748476 7172513 DvMF_0626 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002435051.1 748090 D 883 CDS YP_002435052.1 218885731 7172514 complement(748941..749627) 1 NC_011769.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: dde:Dde_0220 Sel1 repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 749627 7172514 DvMF_0627 Desulfovibrio vulgaris str. 'Miyazaki F' Sel1 domain-containing protein repeat-containing protein YP_002435052.1 748941 R 883 CDS YP_002435053.1 218885732 7172515 complement(750226..751401) 1 NC_011769.1 PFAM: protein of unknown function DUF214; KEGG: gsu:GSU1164 ABC transporter permease; hypothetical protein 751401 7172515 DvMF_0628 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435053.1 750226 R 883 CDS YP_002435054.1 218885733 7172516 complement(751411..752562) 1 NC_011769.1 PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_2406 protein of unknown function DUF214; hypothetical protein 752562 7172516 DvMF_0629 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435054.1 751411 R 883 CDS YP_002435055.1 218885734 7172517 complement(752549..753355) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gsu:GSU1162 ABC transporter ATP-binding protein; ABC transporter 753355 7172517 DvMF_0630 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435055.1 752549 R 883 CDS YP_002435056.1 218885735 7172518 complement(753352..754650) 1 NC_011769.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gsu:GSU1161 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 754650 7172518 DvMF_0631 Desulfovibrio vulgaris str. 'Miyazaki F' RND family efflux transporter MFP subunit YP_002435056.1 753352 R 883 CDS YP_002435057.1 218885736 7172519 755097..755330 1 NC_011769.1 hypothetical protein 755330 7172519 DvMF_0632 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435057.1 755097 D 883 CDS YP_002435058.1 218885737 7172520 complement(755477..756460) 1 NC_011769.1 PFAM: phosphoglycerate mutase; KEGG: pca:Pcar_0229 fructose-2,6-bisphosphatase; phosphoglycerate mutase 756460 7172520 DvMF_0633 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoglycerate mutase YP_002435058.1 755477 R 883 CDS YP_002435059.1 218885738 7172521 complement(756457..758001) 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gur:Gura_1006 metal dependent phosphohydrolase; metal dependent phosphohydrolase 758001 7172521 DvMF_0634 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002435059.1 756457 R 883 CDS YP_002435060.1 218885739 7172522 complement(758152..759240) 1 NC_011769.1 PFAM: protein of unknown function DUF182; KEGG: pth:PTH_0686 xanthine and CO dehydrogenases maturation factor; hypothetical protein 759240 7172522 DvMF_0635 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435060.1 758152 R 883 CDS YP_002435061.1 218885740 7172523 complement(759237..760457) 1 NC_011769.1 KEGG: gme:Gmet_1800 coenzyme F390 synthetase-like; coenzyme F390 synthetase-like protein 760457 7172523 DvMF_0636 Desulfovibrio vulgaris str. 'Miyazaki F' coenzyme F390 synthetase-like protein YP_002435061.1 759237 R 883 CDS YP_002435062.1 218885741 7172524 complement(760454..762220) 1 NC_011769.1 PFAM: radical SAM protein; KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB; radical SAM protein 762220 7172524 DvMF_0637 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002435062.1 760454 R 883 CDS YP_002435063.1 218885742 7172525 complement(762226..762693) 1 NC_011769.1 KEGG: dps:DP0266 hypothetical protein; hypothetical protein 762693 7172525 DvMF_0638 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435063.1 762226 R 883 CDS YP_002435064.1 218885743 7172526 complement(762690..763613) 1 NC_011769.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gur:Gura_1001 methyltransferase type 11; methyltransferase type 11 763613 7172526 DvMF_0639 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase type 11 YP_002435064.1 762690 R 883 CDS YP_002435065.1 218885744 7172527 complement(763610..766318) 1 NC_011769.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gur:Gura_0999 4Fe-4S ferredoxin iron-sulfur binding domain protein; hypothetical protein 766318 7172527 DvMF_0640 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435065.1 763610 R 883 CDS YP_002435066.1 218885745 7172528 complement(766428..769145) 1 NC_011769.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: dde:Dde_3539 aldehyde dehydrogenase, molybdenum-binding subunit apoprotein; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 769145 7172528 DvMF_0641 Desulfovibrio vulgaris str. 'Miyazaki F' molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_002435066.1 766428 R 883 CDS YP_002435067.1 218885746 7172529 complement(769283..770326) 1 NC_011769.1 PFAM: molybdopterin binding domain; KEGG: dde:Dde_3538 molybdenum cofactor cytidylyltransferase; molybdopterin binding domain-containing protein 770326 7172529 DvMF_0642 Desulfovibrio vulgaris str. 'Miyazaki F' molybdopterin binding domain-containing protein YP_002435067.1 769283 R 883 CDS YP_002435068.1 218885747 7172530 770931..773969 1 NC_011769.1 Contains selenocysteine; TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_3510 formate dehydrogenase, subunit alpha; formate dehydrogenase subunit alpha 773969 7172530 DvMF_0643 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase subunit alpha YP_002435068.1 770931 D 883 CDS YP_002435069.1 218885748 7172531 773980..774627 1 NC_011769.1 KEGG: sfu:Sfum_0037 formate dehydrogenase subunit beta; formate dehydrogenase subunit beta 774627 7172531 DvMF_0644 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase subunit beta YP_002435069.1 773980 D 883 CDS YP_002435070.1 218885749 7172532 774920..775933 1 NC_011769.1 PFAM: formate dehydrogenase accessory protein; KEGG: sfu:Sfum_0038 protein involved in formate dehydrogenase formation; formate dehydrogenase accessory protein 775933 7172532 DvMF_0645 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase accessory protein YP_002435070.1 774920 D 883 CDS YP_002435071.1 218885750 7172533 776678..779719 1 NC_011769.1 KEGG: dde:Dde_3513 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, subunit alpha; Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; formate dehydrogenase subunit alpha 779719 7172533 DvMF_0646 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase subunit alpha YP_002435071.1 776678 D 883 CDS YP_002435072.1 218885751 7172534 779773..780432 1 NC_011769.1 KEGG: dde:Dde_3514 formate dehydrogenase subunit beta; formate dehydrogenase subunit beta 780432 7172534 DvMF_0647 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase subunit beta YP_002435072.1 779773 D 883 CDS YP_002435073.1 218885752 7172535 780508..781473 1 NC_011769.1 PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_3515 formate dehydrogenase formation protein FdhE; formate dehydrogenase accessory protein 781473 7172535 DvMF_0648 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase accessory protein YP_002435073.1 780508 D 883 CDS YP_002435074.1 218885753 7172536 781488..781919 1 NC_011769.1 PFAM: cytochrome C class III; KEGG: dde:Dde_0653 high-molecular-weight cytochrome C; cytochrome C class III 781919 7172536 DvMF_0649 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C class III YP_002435074.1 781488 D 883 CDS YP_002435075.1 218885754 7172537 782404..782814 1 NC_011769.1 PFAM: regulatory protein LysR; KEGG: sfu:Sfum_0033 ModE family transcriptional regulator; ModE family transcriptional regulator 782814 7172537 DvMF_0650 Desulfovibrio vulgaris str. 'Miyazaki F' ModE family transcriptional regulator YP_002435075.1 782404 D 883 CDS YP_002435076.1 218885755 7172538 783302..784576 1 NC_011769.1 KEGG: dde:Dde_2862 hypothetical protein; hypothetical protein 784576 7172538 DvMF_0651 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435076.1 783302 D 883 CDS YP_002435077.1 218885756 7172539 complement(784731..785843) 1 NC_011769.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: hmo:HM1_2344 agmatine deiminase; Agmatine deiminase 785843 7172539 DvMF_0652 Desulfovibrio vulgaris str. 'Miyazaki F' Agmatine deiminase YP_002435077.1 784731 R 883 CDS YP_002435078.1 218885757 7172540 786552..787493 1 NC_011769.1 TIGRFAM: N-carbamoylputrescine amidase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ypb:YPTS_3343 N-carbamoylputrescine amidase; N-carbamoylputrescine amidase 787493 7172540 DvMF_0653 Desulfovibrio vulgaris str. 'Miyazaki F' N-carbamoylputrescine amidase YP_002435078.1 786552 D 883 CDS YP_002435079.1 218885758 7172541 787496..789118 1 NC_011769.1 PFAM: amidohydrolase; KEGG: bpe:BP2617 hypothetical protein; amidohydrolase 789118 7172541 DvMF_0654 Desulfovibrio vulgaris str. 'Miyazaki F' amidohydrolase YP_002435079.1 787496 D 883 CDS YP_002435080.1 218885759 7172542 789721..790773 1 NC_011769.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: lip:LI0076 sugar ABC transporter ATP-binding protein; ABC transporter 790773 7172542 DvMF_0655 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435080.1 789721 D 883 CDS YP_002435081.1 218885760 7172543 790871..792166 1 NC_011769.1 PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 probable extracellular solute-binding protein; extracellular solute-binding protein 792166 7172543 DvMF_0656 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular solute-binding protein YP_002435081.1 790871 D 883 CDS YP_002435082.1 218885761 7172544 792406..793299 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transporter; binding-protein-dependent transporters inner membrane component 793299 7172544 DvMF_0657 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002435082.1 792406 D 883 CDS YP_002435083.1 218885762 7172545 793296..794129 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ajs:Ajs_3304 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 794129 7172545 DvMF_0658 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002435083.1 793296 D 883 CDS YP_002435084.1 218885763 7172546 794202..795071 1 NC_011769.1 KEGG: mka:MK0390 HD-superfamily hydrolase; hypothetical protein 795071 7172546 DvMF_0659 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435084.1 794202 D 883 CDS YP_002435085.1 218885764 7172547 complement(795804..796769) 1 NC_011769.1 PFAM: patatin; KEGG: dde:Dde_0819 alpha-beta hydrolase superfamily esterase; patatin 796769 7172547 DvMF_0660 Desulfovibrio vulgaris str. 'Miyazaki F' patatin YP_002435085.1 795804 R 883 CDS YP_002435086.1 218885765 7172548 complement(796854..798914) 1 NC_011769.1 TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0849 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 798914 7172548 DvMF_0661 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002435086.1 796854 R 883 CDS YP_002435087.1 218885766 7172549 complement(799001..800278) 1 NC_011769.1 KEGG: neu:NE0796 capsular polysaccharide biosynthesis protein CapK; Coenzyme F390 synthetase-like protein 800278 7172549 DvMF_0662 Desulfovibrio vulgaris str. 'Miyazaki F' Coenzyme F390 synthetase-like protein YP_002435087.1 799001 R 883 CDS YP_002435088.1 218885767 7172550 complement(800340..801338) 1 NC_011769.1 KEGG: rci:RCIX258 hypothetical protein; hypothetical protein 801338 7172550 DvMF_0663 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435088.1 800340 R 883 CDS YP_002435089.1 218885768 7172551 complement(801335..802759) 1 NC_011769.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mxa:MXAN_2358 decarboxylase, pyridoxal-dependent; Orn/DAP/Arg decarboxylase 2 802759 7172551 DvMF_0664 Desulfovibrio vulgaris str. 'Miyazaki F' Orn/DAP/Arg decarboxylase 2 YP_002435089.1 801335 R 883 CDS YP_002435090.1 218885769 7172552 complement(802777..803937) 1 NC_011769.1 PFAM: protein of unknown function DUF201; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein; hypothetical protein 803937 7172552 DvMF_0665 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435090.1 802777 R 883 CDS YP_002435091.1 218885770 7172553 complement(803934..805100) 1 NC_011769.1 KEGG: reh:H16_B0786 hypothetical protein; hypothetical protein 805100 7172553 DvMF_0666 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435091.1 803934 R 883 CDS YP_002435092.1 218885771 7172554 complement(805097..806107) 1 NC_011769.1 KEGG: mlo:mlr0961 glycosyltransferase; hypothetical protein 806107 7172554 DvMF_0667 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435092.1 805097 R 883 CDS YP_002435093.1 218885772 7172555 complement(806163..807344) 1 NC_011769.1 KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein; ATP-grasp protein-like protein 807344 7172555 DvMF_0668 Desulfovibrio vulgaris str. 'Miyazaki F' ATP-grasp protein-like protein YP_002435093.1 806163 R 883 CDS YP_002435094.1 218885773 7172556 complement(807347..809689) 1 NC_011769.1 KEGG: sus:acid_4187 hypothetical protein; hypothetical protein 809689 7172556 DvMF_0669 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435094.1 807347 R 883 CDS YP_002435095.1 218885774 7172557 complement(809764..811125) 1 NC_011769.1 KEGG: dde:Dde_0850 two component Fis family transcriptional regulator; TIGRFAM: PEP-CTERM system response regulator; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; Fis family transcriptional regulator 811125 7172557 DvMF_0670 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435095.1 809764 R 883 CDS YP_002435096.1 218885775 7172558 complement(811100..811831) 1 NC_011769.1 TIGRFAM: EpsI family protein; KEGG: dde:Dde_0848 hypothetical protein; EpsI family protein 811831 7172558 DvMF_0671 Desulfovibrio vulgaris str. 'Miyazaki F' EpsI family protein YP_002435096.1 811100 R 883 CDS YP_002435097.1 218885776 7172559 complement(811838..812692) 1 NC_011769.1 TIGRFAM: eight transmembrane protein EpsH; PFAM: Eight transmembrane protein EpsH; KEGG: dde:Dde_0847 hypothetical protein; transmembrane protein EpsH 812692 7172559 DvMF_0672 Desulfovibrio vulgaris str. 'Miyazaki F' transmembrane protein EpsH YP_002435097.1 811838 R 883 CDS YP_002435098.1 218885777 7172560 complement(812757..813872) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: scl:sce8918 glycosyltransferase; group 1 glycosyl transferase 813872 7172560 DvMF_0673 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002435098.1 812757 R 883 CDS YP_002435099.1 218885778 7172561 complement(813869..814453) 1 NC_011769.1 KEGG: pat:Patl_1177 hypothetical protein; hypothetical protein 814453 7172561 DvMF_0674 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435099.1 813869 R 883 CDS YP_002435100.1 218885779 7172562 complement(814523..815326) 1 NC_011769.1 KEGG: scl:sce6563 hypothetical protein; acetyltransferase (isoleucine patch superfamily)-like protein 815326 7172562 DvMF_0675 Desulfovibrio vulgaris str. 'Miyazaki F' acetyltransferase (isoleucine patch superfamily)-like protein YP_002435100.1 814523 R 883 CDS YP_002435101.1 218885780 7172563 complement(815337..816461) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0838 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 816461 7172563 DvMF_0676 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002435101.1 815337 R 883 CDS YP_002435102.1 218885781 7172564 complement(816458..817651) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3263 glycosyltransferase; group 1 glycosyl transferase 817651 7172564 DvMF_0677 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002435102.1 816458 R 883 CDS YP_002435103.1 218885782 7172565 complement(817648..819147) 1 NC_011769.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rru:Rru_A3093 membrane protein involved in the export of O-antigen and teichoic acid-like; polysaccharide biosynthesis protein 819147 7172565 DvMF_0678 Desulfovibrio vulgaris str. 'Miyazaki F' polysaccharide biosynthesis protein YP_002435103.1 817648 R 883 CDS YP_002435104.1 218885783 7172566 complement(819144..820457) 1 NC_011769.1 PFAM: O-antigen polymerase; KEGG: gbm:Gbem_1788 O-antigen polymerase; O-antigen polymerase 820457 7172566 DvMF_0679 Desulfovibrio vulgaris str. 'Miyazaki F' O-antigen polymerase YP_002435104.1 819144 R 883 CDS YP_002435105.1 218885784 7172567 complement(820521..821840) 1 NC_011769.1 KEGG: swi:Swit_2495 hypothetical protein; hypothetical protein 821840 7172567 DvMF_0680 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435105.1 820521 R 883 CDS YP_002435106.1 218885785 7172568 complement(821859..822998) 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: maq:Maqu_1655 glycosyl transferase; family 2 glycosyl transferase 822998 7172568 DvMF_0681 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002435106.1 821859 R 883 CDS YP_002435107.1 218885786 7172569 complement(822998..824320) 1 NC_011769.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gur:Gura_2343 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 824320 7172569 DvMF_0682 Desulfovibrio vulgaris str. 'Miyazaki F' DegT/DnrJ/EryC1/StrS aminotransferase YP_002435107.1 822998 R 883 CDS YP_002435108.1 218885787 7172570 complement(824317..825363) 1 NC_011769.1 TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: ppd:Ppro_2469 hypothetical protein; FemAB-like protein 825363 7172570 DvMF_0683 Desulfovibrio vulgaris str. 'Miyazaki F' FemAB-like protein YP_002435108.1 824317 R 883 CDS YP_002435109.1 218885788 7172571 complement(825356..826207) 1 NC_011769.1 TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: ppd:Ppro_2470 polysaccharide deacetylase; polysaccharide deactylase family protein, PEP-CTERM locus subfamily 826207 7172571 DvMF_0684 Desulfovibrio vulgaris str. 'Miyazaki F' polysaccharide deactylase family protein, PEP-CTERM locus subfamily YP_002435109.1 825356 R 883 CDS YP_002435110.1 218885789 7172572 complement(826262..827584) 1 NC_011769.1 TIGRFAM: PEP-CTERM system associated protein; KEGG: dde:Dde_0834 lipoprotein; PEP-CTERM system associated protein 827584 7172572 DvMF_0685 Desulfovibrio vulgaris str. 'Miyazaki F' PEP-CTERM system associated protein YP_002435110.1 826262 R 883 CDS YP_002435111.1 218885790 7172573 complement(827628..828815) 1 NC_011769.1 TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: ATPase AAA; KEGG: dde:Dde_0833 ATPase; secretion ATPase 828815 7172573 DvMF_0686 Desulfovibrio vulgaris str. 'Miyazaki F' secretion ATPase YP_002435111.1 827628 R 883 CDS YP_002435112.1 218885791 7172574 complement(828827..829708) 1 NC_011769.1 TIGRFAM: capsular exopolysaccharide family; exopolysaccharide/PEPCTERM locus tyrosine autokinase; KEGG: dde:Dde_0832 protein-tyrosine kinase; exopolysaccharide/PEPCTERM locus tyrosine autokinase 829708 7172574 DvMF_0687 Desulfovibrio vulgaris str. 'Miyazaki F' exopolysaccharide/PEPCTERM locus tyrosine autokinase YP_002435112.1 828827 R 883 CDS YP_002435113.1 218885792 7172575 complement(829719..831161) 1 NC_011769.1 TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: dde:Dde_0831 chain length determinant family protein; polysaccharide chain length determinant protein, PEP-CTERM locus subfamily 831161 7172575 DvMF_0688 Desulfovibrio vulgaris str. 'Miyazaki F' polysaccharide chain length determinant protein, PEP-CTERM locus subfamily YP_002435113.1 829719 R 883 CDS YP_002435114.1 218885793 7172576 complement(831222..832028) 1 NC_011769.1 TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: dde:Dde_0830 capsular polysaccharide transporter; polysaccharide export protein 832028 7172576 DvMF_0689 Desulfovibrio vulgaris str. 'Miyazaki F' polysaccharide export protein YP_002435114.1 831222 R 883 CDS YP_002435115.1 218885794 7172577 complement(832028..833359) 1 NC_011769.1 TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: dde:Dde_0829 sugar transferase involved in lipopolysaccharide synthesis-like; sugar transferase 833359 7172577 DvMF_0690 Desulfovibrio vulgaris str. 'Miyazaki F' sugar transferase YP_002435115.1 832028 R 883 CDS YP_002435116.1 218885795 7172578 complement(833371..836022) 1 NC_011769.1 KEGG: dde:Dde_0828 hypothetical protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: hypothetical protein; hypothetical protein; hypothetical protein; SMART: hypothetical protein; PEP-CTERM system TPR-repeat lipoprotein 836022 7172578 DvMF_0691 Desulfovibrio vulgaris str. 'Miyazaki F' PEP-CTERM system TPR-repeat lipoprotein YP_002435116.1 833371 R 883 CDS YP_002435117.1 218885796 7172579 837369..840275 1 NC_011769.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_0822 hypothetical protein; hypothetical protein 840275 7172579 DvMF_0692 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435117.1 837369 D 883 CDS YP_002435118.1 218885797 7172580 840610..841473 1 NC_011769.1 PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein; hypothetical protein 841473 7172580 DvMF_0693 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435118.1 840610 D 883 CDS YP_002435119.1 218885798 7172581 841599..842453 1 NC_011769.1 PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein; hypothetical protein 842453 7172581 DvMF_0694 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435119.1 841599 D 883 CDS YP_002435120.1 218885799 7172582 complement(842631..843341) 1 NC_011769.1 TIGRFAM: CAAX prenyl protease-related protein; PFAM: hypothetical protein; KEGG: dde:Dde_0824 CAAX amino terminal protease family protein; CAAX prenyl protease-related protein 843341 7172582 DvMF_0695 Desulfovibrio vulgaris str. 'Miyazaki F' CAAX prenyl protease-related protein YP_002435120.1 842631 R 883 CDS YP_002435121.1 218885800 7172583 complement(843362..844423) 1 NC_011769.1 PFAM: secretion protein HlyD; KEGG: dde:Dde_0825 hypothetical protein; secretion protein HlyD 844423 7172583 DvMF_0696 Desulfovibrio vulgaris str. 'Miyazaki F' secretion protein HlyD YP_002435121.1 843362 R 883 CDS YP_002435122.1 218885801 7172584 complement(844420..845118) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0826 ATPase; ABC transporter 845118 7172584 DvMF_0697 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435122.1 844420 R 883 CDS YP_002435123.1 218885802 7172585 complement(845118..846248) 1 NC_011769.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter permease; hypothetical protein 846248 7172585 DvMF_0698 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435123.1 845118 R 883 CDS YP_002435124.1 218885803 7172586 complement(846293..847762) 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; ATPase AAA; SMART: AAA ATPase; KEGG: dde:Dde_0820 two component Fis family transcriptional regulator; Fis family transcriptional regulator 847762 7172586 DvMF_0699 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435124.1 846293 R 883 CDS YP_002435125.1 218885804 7172587 complement(848471..849817) 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dol:Dole_2401 two component, sigma54 specific, Fis family transcriptional regulator; Fis family transcriptional regulator 849817 7172587 DvMF_0700 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435125.1 848471 R 883 CDS YP_002435126.1 218885805 7172588 complement(849817..851454) 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dol:Dole_2392 histidine kinase; integral membrane sensor signal transduction histidine kinase 851454 7172588 DvMF_0701 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002435126.1 849817 R 883 CDS YP_002435127.1 218885806 7172589 851700..852092 1 NC_011769.1 hypothetical protein 852092 7172589 DvMF_0702 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435127.1 851700 D 883 CDS YP_002435128.1 218885807 7172590 852125..853063 1 NC_011769.1 PFAM: protein of unknown function DUF81; KEGG: pth:PTH_2261 predicted permease; hypothetical protein 853063 7172590 DvMF_0703 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435128.1 852125 D 883 CDS YP_002435129.1 218885808 7172591 853066..853830 1 NC_011769.1 KEGG: pth:PTH_2262 hypothetical protein; hypothetical protein 853830 7172591 DvMF_0704 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435129.1 853066 D 883 CDS YP_002435130.1 218885809 7172592 854036..856669 1 NC_011769.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0630 pyruvate, water dikinase; pyruvate, water dikinase 856669 7172592 DvMF_0705 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate, water dikinase YP_002435130.1 854036 D 883 CDS YP_002435131.1 218885810 7172593 856638..857039 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dol:Dole_2394 response regulator receiver protein; response regulator receiver protein 857039 7172593 DvMF_0706 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002435131.1 856638 D 883 CDS YP_002435132.1 218885811 7172594 857049..859649 1 NC_011769.1 PFAM: PEP-utilising protein mobile region; KEGG: sfu:Sfum_2666 pyruvate, water dikinase; PEP-utilizing protein mobile subunit 859649 7172594 DvMF_0707 Desulfovibrio vulgaris str. 'Miyazaki F' PEP-utilizing protein mobile subunit YP_002435132.1 857049 D 883 CDS YP_002435133.1 218885812 7172595 859652..862423 1 NC_011769.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: sfu:Sfum_2666 pyruvate, water dikinase; pyruvate, water dikinase 862423 7172595 DvMF_0708 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate, water dikinase YP_002435133.1 859652 D 883 CDS YP_002435134.1 218885813 7172596 complement(862570..863235) 1 NC_011769.1 PFAM: metallophosphoesterase; KEGG: dol:Dole_0345 metallophosphoesterase; metallophosphoesterase 863235 7172596 DvMF_0709 Desulfovibrio vulgaris str. 'Miyazaki F' metallophosphoesterase YP_002435134.1 862570 R 883 CDS YP_002435135.1 218885814 7172597 complement(864144..864860) 1 NC_011769.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: lip:LI0836 predicted transcriptional regulator; phage repressor 864860 7172597 DvMF_0710 Desulfovibrio vulgaris str. 'Miyazaki F' phage repressor YP_002435135.1 864144 R 883 CDS YP_002435136.1 218885815 7172598 865149..865607 1 NC_011769.1 KEGG: dde:Dde_3347 hypothetical protein; hypothetical protein 865607 7172598 DvMF_0711 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435136.1 865149 D 883 CDS YP_002435137.1 218885816 7172599 865582..865824 1 NC_011769.1 KEGG: dde:Dde_3348 hypothetical protein; hypothetical protein 865824 7172599 DvMF_0712 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435137.1 865582 D 883 CDS YP_002435138.1 218885817 7172600 865833..868031 1 NC_011769.1 PFAM: transposase-like Mu; KEGG: bvi:Bcep1808_1328 MuA-transposase/repressor protein CI, DNA-binding; transposase-like Mu 868031 7172600 DvMF_0713 Desulfovibrio vulgaris str. 'Miyazaki F' transposase-like Mu YP_002435138.1 865833 D 883 CDS YP_002435139.1 218885818 7172601 868040..868822 1 NC_011769.1 KEGG: aav:Aave_4120 bacteriophage DNA transposition B protein; bacteriophage DNA transposition B protein 868822 7172601 DvMF_0714 Desulfovibrio vulgaris str. 'Miyazaki F' bacteriophage DNA transposition B protein YP_002435139.1 868040 D 883 CDS YP_002435140.1 218885819 7172602 868823..869416 1 NC_011769.1 KEGG: pol:Bpro_3754 hypothetical protein; hypothetical protein 869416 7172602 DvMF_0715 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435140.1 868823 D 883 CDS YP_002435141.1 218885820 7172603 869406..869735 1 NC_011769.1 KEGG: bvi:Bcep1808_1324 LacI family transcriptional regulator; LacI family transcriptional regulator 869735 7172603 DvMF_0716 Desulfovibrio vulgaris str. 'Miyazaki F' LacI family transcriptional regulator YP_002435141.1 869406 D 883 CDS YP_002435142.1 218885821 7172604 869737..870231 1 NC_011769.1 hypothetical protein 870231 7172604 DvMF_0717 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435142.1 869737 D 883 CDS YP_002435143.1 218885822 7172605 870322..870774 1 NC_011769.1 KEGG: dde:Dde_3357 hypothetical protein; hypothetical protein 870774 7172605 DvMF_0718 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435143.1 870322 D 883 CDS YP_002435144.1 218885823 7172606 870777..871001 1 NC_011769.1 hypothetical protein 871001 7172606 DvMF_0719 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435144.1 870777 D 883 CDS YP_002435145.1 218885824 7172607 870988..871428 1 NC_011769.1 PFAM: protein of unknown function DUF1018; KEGG: ypy:YPK_0202 protein of unknown function DUF1018; hypothetical protein 871428 7172607 DvMF_0720 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435145.1 870988 D 883 CDS YP_002435146.1 218885825 7172608 871425..871895 1 NC_011769.1 PFAM: Mor transcription activator domain protein; KEGG: cvi:CV_0355 hypothetical protein; Mor transcription activator domain-containing protein 871895 7172608 DvMF_0721 Desulfovibrio vulgaris str. 'Miyazaki F' Mor transcription activator domain-containing protein YP_002435146.1 871425 D 883 CDS YP_002435147.1 218885826 7172609 872838..873209 1 NC_011769.1 KEGG: lip:LIC084 phage-related membrane protein; phage-related membrane protein 873209 7172609 DvMF_0722 Desulfovibrio vulgaris str. 'Miyazaki F' phage-related membrane protein YP_002435147.1 872838 D 883 CDS YP_002435148.1 218885827 7172610 873212..874000 1 NC_011769.1 PFAM: lytic transglycosylase catalytic; KEGG: lip:LIC036 lytic murein transglycosylase precursor; lytic transglycosylase 874000 7172610 DvMF_0723 Desulfovibrio vulgaris str. 'Miyazaki F' lytic transglycosylase YP_002435148.1 873212 D 883 CDS YP_002435149.1 218885828 7172611 874000..874695 1 NC_011769.1 KEGG: eca:ECA2778 hypothetical protein; hypothetical protein 874695 7172611 DvMF_0724 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435149.1 874000 D 883 CDS YP_002435150.1 218885829 7172612 874692..874958 1 NC_011769.1 hypothetical protein 874958 7172612 DvMF_0725 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435150.1 874692 D 883 CDS YP_002435151.1 218885830 7172613 874972..875187 1 NC_011769.1 KEGG: ypy:YPK_0195 hypothetical protein; hypothetical protein 875187 7172613 DvMF_0726 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435151.1 874972 D 883 CDS YP_002435152.1 218885831 7172614 875189..875695 1 NC_011769.1 PFAM: protein of unknown function DUF1804; KEGG: ypy:YPK_0194 protein of unknown function DUF1804; hypothetical protein 875695 7172614 DvMF_0727 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435152.1 875189 D 883 CDS YP_002435153.1 218885832 7172615 875692..877368 1 NC_011769.1 TIGRFAM: phage uncharacterized protein; KEGG: nma:NMA1852 hypothetical protein; phage protein 877368 7172615 DvMF_0728 Desulfovibrio vulgaris str. 'Miyazaki F' phage protein YP_002435153.1 875692 D 883 CDS YP_002435154.1 218885833 7172616 877343..879001 1 NC_011769.1 PFAM: protein of unknown function DUF935; KEGG: lip:LI0833 hypothetical protein NMA1314; hypothetical protein 879001 7172616 DvMF_0729 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435154.1 877343 D 883 CDS YP_002435155.1 218885834 7172617 879276..880529 1 NC_011769.1 TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; KEGG: cvi:CV_2138 hypothetical protein; phage head morphogenesis protein 880529 7172617 DvMF_0730 Desulfovibrio vulgaris str. 'Miyazaki F' phage head morphogenesis protein YP_002435155.1 879276 D 883 CDS YP_002435156.1 218885835 7172618 880672..881154 1 NC_011769.1 TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein; phage virion morphogenesis protein 881154 7172618 DvMF_0731 Desulfovibrio vulgaris str. 'Miyazaki F' phage virion morphogenesis protein YP_002435156.1 880672 D 883 CDS YP_002435157.1 218885836 7172619 881296..881886 1 NC_011769.1 KEGG: slo:Shew_2180 hypothetical protein; hypothetical protein 881886 7172619 DvMF_0732 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435157.1 881296 D 883 CDS YP_002435158.1 218885837 7172620 881883..882815 1 NC_011769.1 KEGG: slo:Shew_2179 hypothetical protein; hypothetical protein 882815 7172620 DvMF_0733 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435158.1 881883 D 883 CDS YP_002435159.1 218885838 7172621 882852..884036 1 NC_011769.1 KEGG: bvi:Bcep1808_1303 hypothetical protein; hypothetical protein 884036 7172621 DvMF_0734 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435159.1 882852 D 883 CDS YP_002435160.1 218885839 7172622 884040..884969 1 NC_011769.1 KEGG: lip:LIC067 hypothetical protein; hypothetical protein 884969 7172622 DvMF_0735 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435160.1 884040 D 883 CDS YP_002435161.1 218885840 7172623 884981..885397 1 NC_011769.1 KEGG: cel:ZK84.1 ZK84.1; hypothetical protein 885397 7172623 DvMF_0736 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435161.1 884981 D 883 CDS YP_002435162.1 218885841 7172624 885398..885817 1 NC_011769.1 PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein; hypothetical protein 885817 7172624 DvMF_0737 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435162.1 885398 D 883 CDS YP_002435163.1 218885842 7172625 885814..886434 1 NC_011769.1 PFAM: Domain of unknown function DUF1834; KEGG: lip:LIC069 hypothetical protein; hypothetical protein 886434 7172625 DvMF_0738 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435163.1 885814 D 883 CDS YP_002435164.1 218885843 7172626 886436..886639 1 NC_011769.1 KEGG: hsm:HSM_0675 hypothetical protein; hypothetical protein 886639 7172626 DvMF_0739 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435164.1 886436 D 883 CDS YP_002435165.1 218885844 7172627 886626..888047 1 NC_011769.1 PFAM: Mu tail sheath family protein; KEGG: bbr:BB3621 phage tail sheath protein; Mu tail sheath family protein 888047 7172627 DvMF_0740 Desulfovibrio vulgaris str. 'Miyazaki F' Mu tail sheath family protein YP_002435165.1 886626 D 883 CDS YP_002435166.1 218885845 7172628 888235..888609 1 NC_011769.1 KEGG: bbr:BB3620 hypothetical protein; hypothetical protein 888609 7172628 DvMF_0741 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435166.1 888235 D 883 CDS YP_002435167.1 218885846 7172629 888613..888942 1 NC_011769.1 KEGG: lip:LIC072 NA; hypothetical protein 888942 7172629 DvMF_0742 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435167.1 888613 D 883 CDS YP_002435168.1 218885847 7172630 889104..891044 1 NC_011769.1 KEGG: bbr:BB3617 hypothetical protein; hypothetical protein 891044 7172630 DvMF_0743 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435168.1 889104 D 883 CDS YP_002435169.1 218885848 7172631 891065..892405 1 NC_011769.1 PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein; DNA circulation family protein 892405 7172631 DvMF_0744 Desulfovibrio vulgaris str. 'Miyazaki F' DNA circulation family protein YP_002435169.1 891065 D 883 CDS YP_002435170.1 218885849 7172632 892395..893495 1 NC_011769.1 KEGG: bbr:BB3615 phage tail protein; phage tail protein 893495 7172632 DvMF_0745 Desulfovibrio vulgaris str. 'Miyazaki F' phage tail protein YP_002435170.1 892395 D 883 CDS YP_002435171.1 218885850 7172633 893653..894279 1 NC_011769.1 TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; KEGG: cvi:CV_0345 bacteriophage base plate protein; phage baseplate assembly protein V 894279 7172633 DvMF_0746 Desulfovibrio vulgaris str. 'Miyazaki F' phage baseplate assembly protein V YP_002435171.1 893653 D 883 CDS YP_002435172.1 218885851 7172634 complement(894257..895699) 1 NC_011769.1 KEGG: hmo:HM1_0929 hypothetical protein; hypothetical protein 895699 7172634 DvMF_0747 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435172.1 894257 R 883 CDS YP_002435173.1 218885852 7172635 895783..896154 1 NC_011769.1 KEGG: bbr:BB3613 hypothetical protein; hypothetical protein 896154 7172635 DvMF_0748 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435173.1 895783 D 883 CDS YP_002435174.1 218885853 7172636 896164..897225 1 NC_011769.1 PFAM: Baseplate J family protein; KEGG: bbr:BB3612 phage tail protein; baseplate J family protein 897225 7172636 DvMF_0749 Desulfovibrio vulgaris str. 'Miyazaki F' baseplate J family protein YP_002435174.1 896164 D 883 CDS YP_002435175.1 218885854 7172637 897222..897791 1 NC_011769.1 KEGG: lip:LIC089 hypothetical protein; hypothetical protein 897791 7172637 DvMF_0750 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435175.1 897222 D 883 CDS YP_002435176.1 218885855 7172638 897835..899127 1 NC_011769.1 KEGG: lip:LIC026 hypothetical protein; hypothetical protein 899127 7172638 DvMF_0751 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435176.1 897835 D 883 CDS YP_002435177.1 218885856 7172639 899136..899693 1 NC_011769.1 KEGG: esa:ESA_01046 hypothetical protein; hypothetical protein 899693 7172639 DvMF_0752 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435177.1 899136 D 883 CDS YP_002435178.1 218885857 7172640 899979..900185 1 NC_011769.1 KEGG: dde:Dde_3395 hypothetical protein; hypothetical protein 900185 7172640 DvMF_0753 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435178.1 899979 D 883 CDS YP_002435179.1 218885858 7172641 900151..900882 1 NC_011769.1 KEGG: ecs:ECs4998 DNA modification protein; DNA modification protein 900882 7172641 DvMF_0754 Desulfovibrio vulgaris str. 'Miyazaki F' DNA modification protein YP_002435179.1 900151 D 883 CDS YP_002435180.1 218885859 7172642 complement(900925..901131) 1 NC_011769.1 KEGG: fjo:Fjoh_4853 hypothetical protein; hypothetical protein 901131 7172642 DvMF_0755 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435180.1 900925 R 883 CDS YP_002435181.1 218885860 7172644 901608..902336 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1596 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 902336 7172644 DvMF_0756 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002435181.1 901608 D 883 CDS YP_002435182.1 218885861 7172645 902407..902829 1 NC_011769.1 KEGG: cre:CHLREDRAFT_149841 hypothetical protein Pfam: Extensin_2 PROSITE: ALA_RICH GLN_RICH HIS_RICH PRO_RICH; hypothetical protein 902829 7172645 DvMF_0757 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435182.1 902407 D 883 CDS YP_002435183.1 218885862 7172646 903125..903877 1 NC_011769.1 PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1595 hypothetical protein; hypothetical protein 903877 7172646 DvMF_0758 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435183.1 903125 D 883 CDS YP_002435184.1 218885863 7172647 complement(904072..906045) 1 NC_011769.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 906045 7172647 DvMF_0759 Desulfovibrio vulgaris str. 'Miyazaki F' methionyl-tRNA synthetase YP_002435184.1 904072 R 883 CDS YP_002435185.1 218885864 7172648 complement(906208..907884) 1 NC_011769.1 PFAM: PSP1 domain protein; KEGG: dde:Dde_1593 hypothetical protein; PSP1 domain-containing protein 907884 7172648 DvMF_0760 Desulfovibrio vulgaris str. 'Miyazaki F' PSP1 domain-containing protein YP_002435185.1 906208 R 883 CDS YP_002435186.1 218885865 7172649 908194..908751 1 NC_011769.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1591 hypothetical protein; metal dependent phosphohydrolase 908751 7172649 DvMF_0761 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002435186.1 908194 D 883 CDS YP_002435187.1 218885866 7172650 908926..909921 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1590 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 909921 7172650 DvMF_0762 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002435187.1 908926 D 883 CDS YP_002435188.1 218885867 7172651 910188..911534 1 NC_011769.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 911534 7172651 DvMF_0763 Desulfovibrio vulgaris str. 'Miyazaki F' diphosphate--fructose-6-phosphate 1-phosphotransferase YP_002435188.1 910188 D 883 CDS YP_002435189.1 218885868 7172652 911777..915262 1 NC_011769.1 PFAM: UvrD/REP helicase; KEGG: dde:Dde_1588 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 915262 7172652 DvMF_0764 Desulfovibrio vulgaris str. 'Miyazaki F' UvrD/REP helicase YP_002435189.1 911777 D 883 CDS YP_002435190.1 218885869 7172653 915259..918561 1 NC_011769.1 KEGG: dde:Dde_1587 hypothetical protein; hypothetical protein 918561 7172653 DvMF_0765 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435190.1 915259 D 883 CDS YP_002435191.1 218885870 7172654 918900..920021 1 NC_011769.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: lip:LI1075 dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 920021 7172654 DvMF_0766 Desulfovibrio vulgaris str. 'Miyazaki F' 2-nitropropane dioxygenase YP_002435191.1 918900 D 883 CDS YP_002435192.1 218885871 7172655 complement(920234..921349) 1 NC_011769.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dde:Dde_1585 site-specific recombinase XerD-like; integrase family protein 921349 7172655 DvMF_0767 Desulfovibrio vulgaris str. 'Miyazaki F' integrase family protein YP_002435192.1 920234 R 883 CDS YP_002435193.1 218885872 7172656 complement(921576..922637) 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase; response regulator receiver modulated diguanylate cyclase 922637 7172656 DvMF_0768 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver modulated diguanylate cyclase YP_002435193.1 921576 R 883 CDS YP_002435194.1 218885873 7172657 complement(922774..923613) 1 NC_011769.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; KEGG: dde:Dde_1583 signal transduction protein; metal dependent phosphohydrolase 923613 7172657 DvMF_0769 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002435194.1 922774 R 883 CDS YP_002435195.1 218885874 7172658 complement(923610..924104) 1 NC_011769.1 KEGG: dde:Dde_1582 hypothetical protein; hypothetical protein 924104 7172658 DvMF_0770 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435195.1 923610 R 883 CDS YP_002435196.1 218885875 7172659 complement(924160..925821) 1 NC_011769.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA; DNA protecting protein DprA 925821 7172659 DvMF_0771 Desulfovibrio vulgaris str. 'Miyazaki F' DNA protecting protein DprA YP_002435196.1 924160 R 883 CDS YP_002435197.1 218885876 7172660 complement(925893..926750) 1 NC_011769.1 TIGRFAM: tol-pal system protein YbgF; PFAM: hypothetical protein; KEGG: dde:Dde_1580 TPR domain-containing protein; tol-pal system protein YbgF 926750 7172660 DvMF_0772 Desulfovibrio vulgaris str. 'Miyazaki F' tol-pal system protein YbgF YP_002435197.1 925893 R 883 CDS YP_002435198.1 218885877 7172661 927019..927975 1 NC_011769.1 KEGG: dde:Dde_1579 hypothetical protein; hypothetical protein 927975 7172661 DvMF_0773 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435198.1 927019 D 883 CDS YP_002435199.1 218885878 7172662 complement(928063..931155) 1 NC_011769.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_1577 chemotaxis protein CheA; chemotaxis protein CheA 931155 7172662 DvMF_0774 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheA YP_002435199.1 928063 R 883 CDS YP_002435200.1 218885879 7172663 complement(931315..931683) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_1576 response regulator receiver domain-containing protein; response regulator receiver protein 931683 7172663 DvMF_0775 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002435200.1 931315 R 883 CDS YP_002435201.1 218885880 7172664 complement(931694..932380) 1 NC_011769.1 PFAM: CheW domain protein; KEGG: dde:Dde_1575 CheW protein; chemotaxis protein CheW 932380 7172664 DvMF_0776 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheW YP_002435201.1 931694 R 883 CDS YP_002435202.1 218885881 7172665 complement(932377..933150) 1 NC_011769.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_1574 ParA family protein; cobyrinic acid ac-diamide synthase 933150 7172665 DvMF_0777 Desulfovibrio vulgaris str. 'Miyazaki F' cobyrinic acid ac-diamide synthase YP_002435202.1 932377 R 883 CDS YP_002435203.1 218885882 7172666 complement(933286..934164) 1 NC_011769.1 PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_1573 MCP methyltransferase, CheR-type; chemotaxis protein CheR 934164 7172666 DvMF_0778 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheR YP_002435203.1 933286 R 883 CDS YP_002435204.1 218885883 7172667 complement(934164..936089) 1 NC_011769.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: dde:Dde_1572 heat repeat-containing PBS lyase; PBS lyase HEAT domain-containing protein 936089 7172667 DvMF_0779 Desulfovibrio vulgaris str. 'Miyazaki F' PBS lyase HEAT domain-containing protein YP_002435204.1 934164 R 883 CDS YP_002435205.1 218885884 7172668 complement(936260..937402) 1 NC_011769.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_1571 response regulator receiver domain-containing protein; response regulator receiver modulated CheB methylesterase 937402 7172668 DvMF_0780 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver modulated CheB methylesterase YP_002435205.1 936260 R 883 CDS YP_002435206.1 218885885 7172670 938303..939085 1 NC_011769.1 PFAM: NLP/P60 protein; KEGG: dsy:DSY2087 hypothetical protein; NLP/P60 protein 939085 7172670 DvMF_0781 Desulfovibrio vulgaris str. 'Miyazaki F' NLP/P60 protein YP_002435206.1 938303 D 883 CDS YP_002435207.1 218885886 7172671 939432..939974 1 NC_011769.1 KEGG: har:HEAR3040 hypothetical protein; hypothetical protein 939974 7172671 DvMF_0782 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435207.1 939432 D 883 CDS YP_002435208.1 218885887 7172672 940523..941923 1 NC_011769.1 KEGG: tbd:Tbd_1726 L-sorbosone dehydrogenase; glucose/sorbosone dehydrogenase 941923 7172672 DvMF_0783 Desulfovibrio vulgaris str. 'Miyazaki F' glucose/sorbosone dehydrogenase YP_002435208.1 940523 D 883 CDS YP_002435209.1 218885888 7172673 942184..942423 1 NC_011769.1 hypothetical protein 942423 7172673 DvMF_0784 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435209.1 942184 D 883 CDS YP_002435210.1 218885889 7172674 942641..943018 1 NC_011769.1 KEGG: dps:DP2299 hypothetical protein; hypothetical protein 943018 7172674 DvMF_0785 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435210.1 942641 D 883 CDS YP_002435211.1 218885890 7172675 943451..944338 1 NC_011769.1 PFAM: flagellin domain protein; KEGG: dde:Dde_1570 flagellin; flagellin domain-containing protein 944338 7172675 DvMF_0786 Desulfovibrio vulgaris str. 'Miyazaki F' flagellin domain-containing protein YP_002435211.1 943451 D 883 CDS YP_002435212.1 218885891 7172676 complement(944569..946737) 1 NC_011769.1 KEGG: dde:Dde_1569 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 946737 7172676 DvMF_0787 Desulfovibrio vulgaris str. 'Miyazaki F' (p)ppGpp synthetase I SpoT/RelA YP_002435212.1 944569 R 883 CDS YP_002435213.1 218885892 7172677 complement(947079..948809) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 5; KEGG: lip:LI0169 ABC-type dipeptide transporter, periplasmic component; peptide ABC transporter periplasmic protein 948809 7172677 DvMF_0788 Desulfovibrio vulgaris str. 'Miyazaki F' peptide ABC transporter periplasmic protein YP_002435213.1 947079 R 883 CDS YP_002435214.1 218885893 7172678 949088..952297 1 NC_011769.1 KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like; PFAM: SNF2-related protein; helicase; SMART: DEAD-like helicases; DEAD/DEAH box helicase 952297 7172678 DvMF_0789 Desulfovibrio vulgaris str. 'Miyazaki F' DEAD/DEAH box helicase YP_002435214.1 949088 D 883 CDS YP_002435215.1 218885894 7172679 952504..952866 1 NC_011769.1 KEGG: psa:PST_1468 hypothetical protein; hypothetical protein 952866 7172679 DvMF_0790 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435215.1 952504 D 883 CDS YP_002435216.1 218885895 7172681 complement(955548..956042) 1 NC_011769.1 PFAM: CheW domain protein; KEGG: lip:LI1170 chemotaxis signal transduction protein; chemotaxis protein CheW 956042 7172681 DvMF_0792 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheW YP_002435216.1 955548 R 883 CDS YP_002435217.1 218885896 7172682 complement(956092..957840) 1 NC_011769.1 PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 957840 7172682 DvMF_0793 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002435217.1 956092 R 883 CDS YP_002435218.1 218885897 7172683 958343..958648 1 NC_011769.1 PFAM: helix-turn-helix domain protein; KEGG: ote:Oter_3445 XRE family transcriptional regulator; XRE family transcriptional regulator 958648 7172683 DvMF_0794 Desulfovibrio vulgaris str. 'Miyazaki F' XRE family transcriptional regulator YP_002435218.1 958343 D 883 CDS YP_002435219.1 218885898 7172684 958941..960131 1 NC_011769.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: yli:YALI0A06864g hypothetical protein; calcium-binding domain-containing protein 960131 7172684 DvMF_0795 Desulfovibrio vulgaris str. 'Miyazaki F' calcium-binding domain-containing protein YP_002435219.1 958941 D 883 CDS YP_002435220.1 218885899 7172685 960431..961423 1 NC_011769.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: abu:Abu_1162 hypothetical protein; calcium-binding domain-containing protein 961423 7172685 DvMF_0796 Desulfovibrio vulgaris str. 'Miyazaki F' calcium-binding domain-containing protein YP_002435220.1 960431 D 883 CDS YP_002435221.1 218885900 7172686 complement(961619..962272) 1 NC_011769.1 KEGG: dde:Dde_1558 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 962272 7172686 DvMF_0797 Desulfovibrio vulgaris str. 'Miyazaki F' thiamine-phosphate pyrophosphorylase YP_002435221.1 961619 R 883 CDS YP_002435222.1 218885901 7172687 complement(962598..963218) 1 NC_011769.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 963218 7172687 DvMF_0798 Desulfovibrio vulgaris str. 'Miyazaki F' thiamine biosynthesis protein ThiF YP_002435222.1 962598 R 883 CDS YP_002435223.1 218885902 7172688 complement(963303..964547) 1 NC_011769.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 964547 thiH 7172688 thiH Desulfovibrio vulgaris str. 'Miyazaki F' thiamine biosynthesis protein ThiH YP_002435223.1 963303 R 883 CDS YP_002435224.1 218885903 7172689 complement(964667..965467) 1 NC_011769.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 965467 thiG 7172689 thiG Desulfovibrio vulgaris str. 'Miyazaki F' thiazole synthase YP_002435224.1 964667 R 883 CDS YP_002435225.1 218885904 7172690 complement(965467..965667) 1 NC_011769.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: dde:Dde_1554 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 965667 7172690 DvMF_0801 Desulfovibrio vulgaris str. 'Miyazaki F' thiamine biosynthesis protein ThiS YP_002435225.1 965467 R 883 CDS YP_002435226.1 218885905 7172691 complement(966101..967405) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rca:Rcas_0164 ABC transporter; ABC transporter 967405 7172691 DvMF_0802 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435226.1 966101 R 883 CDS YP_002435227.1 218885906 7172692 complement(967409..969139) 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rrs:RoseRS_4593 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 969139 7172692 DvMF_0803 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002435227.1 967409 R 883 CDS YP_002435228.1 218885907 7172693 complement(969458..969874) 1 NC_011769.1 PFAM: UspA domain protein; KEGG: sfu:Sfum_0624 UspA domain protein; UspA domain-containing protein 969874 7172693 DvMF_0804 Desulfovibrio vulgaris str. 'Miyazaki F' UspA domain-containing protein YP_002435228.1 969458 R 883 CDS YP_002435229.1 218885908 7172694 complement(970420..971280) 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bha:BH0390 hypothetical protein; hypothetical protein 971280 7172694 DvMF_0805 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435229.1 970420 R 883 CDS YP_002435230.1 218885909 7172695 complement(971543..972610) 1 NC_011769.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pau:PA14_21720 AraC family transcriptional regulator; AraC family transcriptional regulator 972610 7172695 DvMF_0806 Desulfovibrio vulgaris str. 'Miyazaki F' AraC family transcriptional regulator YP_002435230.1 971543 R 883 CDS YP_002435231.1 218885910 7172696 complement(972878..973951) 1 NC_011769.1 PFAM: sodium symporter; KEGG: afw:Anae109_3613 bile acid:sodium symporter; sodium symporter 973951 7172696 DvMF_0807 Desulfovibrio vulgaris str. 'Miyazaki F' sodium symporter YP_002435231.1 972878 R 883 CDS YP_002435232.1 218885911 7172697 974173..974967 1 NC_011769.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: psb:Psyr_0649 helix-turn-helix, AraC type:AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 974967 7172697 DvMF_0808 Desulfovibrio vulgaris str. 'Miyazaki F' AraC family transcriptional regulator YP_002435232.1 974173 D 883 CDS YP_002435233.1 218885912 7172698 complement(975417..976910) 1 NC_011769.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: dde:Dde_0410 glycerol kinase; glycerol kinase 976910 7172698 DvMF_0809 Desulfovibrio vulgaris str. 'Miyazaki F' glycerol kinase YP_002435233.1 975417 R 883 CDS YP_002435234.1 218885913 7172699 complement(977066..977824) 1 NC_011769.1 PFAM: major intrinsic protein; KEGG: dde:Dde_0409 glycerol uptake facilitator protein; major intrinsic protein 977824 7172699 DvMF_0810 Desulfovibrio vulgaris str. 'Miyazaki F' major intrinsic protein YP_002435234.1 977066 R 883 CDS YP_002435235.1 218885914 7172700 complement(978208..979836) 1 NC_011769.1 PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_0408 glycerol-3-phosphate dehydrogenase, FAD-dependent; FAD dependent oxidoreductase 979836 7172700 DvMF_0811 Desulfovibrio vulgaris str. 'Miyazaki F' FAD dependent oxidoreductase YP_002435235.1 978208 R 883 CDS YP_002435236.1 218885915 7172701 complement(979833..980795) 1 NC_011769.1 PFAM: sugar-binding domain protein; KEGG: dde:Dde_0407 transcriptional regulator; DeoR family transcriptional regulator 980795 7172701 DvMF_0812 Desulfovibrio vulgaris str. 'Miyazaki F' DeoR family transcriptional regulator YP_002435236.1 979833 R 883 CDS YP_002435237.1 218885916 7172702 complement(981218..981760) 1 NC_011769.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dde:Dde_1545 single-strand binding protein; single-strand binding protein 981760 7172702 DvMF_0813 Desulfovibrio vulgaris str. 'Miyazaki F' single-strand binding protein YP_002435237.1 981218 R 883 CDS YP_002435238.1 218885917 7172703 complement(982081..982455) 1 NC_011769.1 KEGG: dde:Dde_1544 hypothetical protein; hypothetical protein 982455 7172703 DvMF_0814 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435238.1 982081 R 883 CDS YP_002435239.1 218885918 7172704 complement(982459..983109) 1 NC_011769.1 KEGG: dde:Dde_1543 hypothetical protein; hypothetical protein 983109 7172704 DvMF_0815 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435239.1 982459 R 883 CDS YP_002435240.1 218885919 7172705 complement(983140..985404) 1 NC_011769.1 PFAM: acetyl-CoA carboxylase subunit alpha; KEGG: dde:Dde_1542 acetyl-CoA carboxylase; acetyl-CoA carboxylase 985404 7172705 DvMF_0816 Desulfovibrio vulgaris str. 'Miyazaki F' acetyl-CoA carboxylase YP_002435240.1 983140 R 883 CDS YP_002435241.1 218885920 7172706 complement(985648..987066) 1 NC_011769.1 PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; KEGG: dde:Dde_1541 pyruvate carboxylase; biotin carboxylase 987066 7172706 DvMF_0817 Desulfovibrio vulgaris str. 'Miyazaki F' biotin carboxylase YP_002435241.1 985648 R 883 CDS YP_002435242.1 218885921 7172707 complement(987175..987705) 1 NC_011769.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1540 hypothetical protein; type IV pilus assembly PilZ 987705 7172707 DvMF_0818 Desulfovibrio vulgaris str. 'Miyazaki F' type IV pilus assembly PilZ YP_002435242.1 987175 R 883 CDS YP_002435243.1 218885922 7172708 complement(987821..988555) 1 NC_011769.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein; OmpA/MotB domain-containing protein 988555 7172708 DvMF_0819 Desulfovibrio vulgaris str. 'Miyazaki F' OmpA/MotB domain-containing protein YP_002435243.1 987821 R 883 CDS YP_002435244.1 218885923 7172709 complement(988545..989300) 1 NC_011769.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1538 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel 989300 7172709 DvMF_0820 Desulfovibrio vulgaris str. 'Miyazaki F' MotA/TolQ/ExbB proton channel YP_002435244.1 988545 R 883 CDS YP_002435245.1 218885924 7172710 989439..990284 1 NC_011769.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 990284 7172710 DvMF_0821 Desulfovibrio vulgaris str. 'Miyazaki F' purine nucleoside phosphorylase YP_002435245.1 989439 D 883 CDS YP_002435246.1 218885925 7172711 991207..993045 1 NC_011769.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: lip:LI0145 GTP-binding protein LepA; GTP-binding protein TypA 993045 7172711 DvMF_0822 Desulfovibrio vulgaris str. 'Miyazaki F' GTP-binding protein TypA YP_002435246.1 991207 D 883 CDS YP_002435247.1 218885926 7172712 complement(993314..994684) 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dol:Dole_0427 two component, sigma54 specific, Fis family transcriptional regulator; Fis family transcriptional regulator 994684 7172712 DvMF_0823 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435247.1 993314 R 883 CDS YP_002435248.1 218885927 7172713 complement(994692..996542) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dol:Dole_0426 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB 996542 7172713 DvMF_0824 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction histidine kinase, nitrogen specific, NtrB YP_002435248.1 994692 R 883 CDS YP_002435249.1 218885928 7172714 996836..997072 1 NC_011769.1 hypothetical protein 997072 7172714 DvMF_0825 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435249.1 996836 D 883 CDS YP_002435250.1 218885929 7172715 997540..999438 1 NC_011769.1 PFAM: cytochrome C assembly protein; KEGG: dde:Dde_1477 cytochrome C biogenesis protein CcmF; cytochrome C assembly protein 999438 7172715 DvMF_0826 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C assembly protein YP_002435250.1 997540 D 883 CDS YP_002435251.1 218885930 7172716 999431..1000003 1 NC_011769.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1473 hypothetical protein; hypothetical protein 1000003 7172716 DvMF_0827 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435251.1 999431 D 883 CDS YP_002435252.1 218885931 7172717 1000294..1000659 1 NC_011769.1 KEGG: dde:Dde_1532 hypothetical protein; hypothetical protein 1000659 7172717 DvMF_0828 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435252.1 1000294 D 883 CDS YP_002435253.1 218885932 7172718 complement(1000881..1001873) 1 NC_011769.1 PFAM: alpha/beta hydrolase fold; KEGG: dde:Dde_1531 hypothetical protein; alpha/beta hydrolase fold protein 1001873 7172718 DvMF_0829 Desulfovibrio vulgaris str. 'Miyazaki F' alpha/beta hydrolase fold protein YP_002435253.1 1000881 R 883 CDS YP_002435254.1 218885933 7172719 1002304..1003563 1 NC_011769.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: dde:Dde_1530 hypothetical protein; hypothetical protein 1003563 7172719 DvMF_0830 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435254.1 1002304 D 883 CDS YP_002435255.1 218885934 7172720 1003800..1005158 1 NC_011769.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ana:alr5216 probable hemolysin; hypothetical protein 1005158 7172720 DvMF_0831 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435255.1 1003800 D 883 CDS YP_002435256.1 218885935 7172721 1005310..1005576 1 NC_011769.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: sew:SeSA_A0973 C4-type hypothetical protein, DksA/TraR family; hypothetical protein 1005576 7172721 DvMF_0832 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435256.1 1005310 D 883 CDS YP_002435257.1 218885936 7172722 complement(1005855..1006979) 1 NC_011769.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: dde:Dde_1529 adenosylcobinamide-phosphate synthase; cobalamin biosynthesis protein CbiB 1006979 7172722 DvMF_0833 Desulfovibrio vulgaris str. 'Miyazaki F' cobalamin biosynthesis protein CbiB YP_002435257.1 1005855 R 883 CDS YP_002435258.1 218885937 7172723 complement(1006979..1007437) 1 NC_011769.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1528 RNA methyltransferase; tRNA/rRNA methyltransferase SpoU 1007437 7172723 DvMF_0834 Desulfovibrio vulgaris str. 'Miyazaki F' tRNA/rRNA methyltransferase SpoU YP_002435258.1 1006979 R 883 CDS YP_002435259.1 218885938 7172724 complement(1007571..1009331) 1 NC_011769.1 PFAM: glycoside hydrolase; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 1009331 7172724 DvMF_0835 Desulfovibrio vulgaris str. 'Miyazaki F' beta-N-acetylhexosaminidase YP_002435259.1 1007571 R 883 CDS YP_002435260.1 218885939 7172725 complement(1009355..1011106) 1 NC_011769.1 PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_2282 hydantoinase/oxoprolinase family protein; hydantoinase/oxoprolinase 1011106 7172725 DvMF_0836 Desulfovibrio vulgaris str. 'Miyazaki F' hydantoinase/oxoprolinase YP_002435260.1 1009355 R 883 CDS YP_002435261.1 218885940 7172726 complement(1011110..1012198) 1 NC_011769.1 KEGG: dde:Dde_2283 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 1012198 7172726 DvMF_0837 Desulfovibrio vulgaris str. 'Miyazaki F' 4-hydroxythreonine-4-phosphate dehydrogenase YP_002435261.1 1011110 R 883 CDS YP_002435262.1 218885941 7172727 complement(1012255..1013007) 1 NC_011769.1 KEGG: shm:Shewmr7_0582 hypothetical protein; hypothetical protein 1013007 7172727 DvMF_0838 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435262.1 1012255 R 883 CDS YP_002435263.1 218885942 7172728 complement(1013287..1014276) 1 NC_011769.1 PFAM: peptidase T2 asparaginase 2; KEGG: dde:Dde_2284 asparaginase; asparaginase 1014276 7172728 DvMF_0839 Desulfovibrio vulgaris str. 'Miyazaki F' asparaginase YP_002435263.1 1013287 R 883 CDS YP_002435264.1 218885943 7172729 complement(1014472..1016403) 1 NC_011769.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 1016403 7172729 DvMF_0840 Desulfovibrio vulgaris str. 'Miyazaki F' glycogen branching protein YP_002435264.1 1014472 R 883 CDS YP_002435265.1 218885944 7172730 complement(1016479..1017945) 1 NC_011769.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: dde:Dde_2286 glycogen/starch synthase, ADP-glucose type; glycogen/starch synthase 1017945 7172730 DvMF_0841 Desulfovibrio vulgaris str. 'Miyazaki F' glycogen/starch synthase YP_002435265.1 1016479 R 883 CDS YP_002435266.1 218885945 7172731 complement(1018111..1018641) 1 NC_011769.1 PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/NUDIX family protein; NUDIX hydrolase 1018641 7172731 DvMF_0842 Desulfovibrio vulgaris str. 'Miyazaki F' NUDIX hydrolase YP_002435266.1 1018111 R 883 CDS YP_002435267.1 218885946 7172732 1018796..1020058 1 NC_011769.1 PFAM: glycosyl transferase family 9; KEGG: art:Arth_0353 glycosyl transferase, family 9; glycosyl transferase family protein 1020058 7172732 DvMF_0843 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002435267.1 1018796 D 883 CDS YP_002435268.1 218885947 7172733 complement(1020483..1021139) 1 NC_011769.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: dde:Dde_2289 translation factor SUA5; Sua5/YciO/YrdC/YwlC family protein 1021139 7172733 DvMF_0844 Desulfovibrio vulgaris str. 'Miyazaki F' Sua5/YciO/YrdC/YwlC family protein YP_002435268.1 1020483 R 883 CDS YP_002435269.1 218885948 7172734 1021251..1021718 1 NC_011769.1 PFAM: protein of unknown function DUF163; KEGG: dde:Dde_2291 hypothetical protein; hypothetical protein 1021718 7172734 DvMF_0845 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435269.1 1021251 D 883 CDS YP_002435270.1 218885949 7172735 complement(1021732..1024080) 1 NC_011769.1 KEGG: dde:Dde_3699 hypothetical protein; hypothetical protein 1024080 7172735 DvMF_0846 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435270.1 1021732 R 883 CDS YP_002435271.1 218885950 7172736 1024519..1024737 1 NC_011769.1 KEGG: dde:Dde_2292 hypothetical protein; hypothetical protein 1024737 7172736 DvMF_0847 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435271.1 1024519 D 883 CDS YP_002435272.1 218885951 7172737 complement(1024874..1025650) 1 NC_011769.1 PFAM: glucose inhibited division protein; KEGG: dde:Dde_2293 methyltransferase GidB; glucose inhibited division protein 1025650 7172737 DvMF_0848 Desulfovibrio vulgaris str. 'Miyazaki F' glucose inhibited division protein YP_002435272.1 1024874 R 883 CDS YP_002435273.1 218885952 7172738 1026168..1027130 1 NC_011769.1 PFAM: acyl transferase; KEGG: dde:Dde_2294 [acyl-carrier-protein] S-malonyltransferase; acyl transferase 1027130 7172738 DvMF_0849 Desulfovibrio vulgaris str. 'Miyazaki F' acyl transferase YP_002435273.1 1026168 D 883 CDS YP_002435274.1 218885953 7172739 1027677..1029332 1 NC_011769.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1029332 argS 7172739 argS Desulfovibrio vulgaris str. 'Miyazaki F' arginyl-tRNA synthetase YP_002435274.1 1027677 D 883 CDS YP_002435275.1 218885954 7172740 1029357..1030292 1 NC_011769.1 PFAM: sporulation domain protein; KEGG: lip:LI0230 hypothetical protein; sporulation domain protein 1030292 7172740 DvMF_0851 Desulfovibrio vulgaris str. 'Miyazaki F' sporulation domain protein YP_002435275.1 1029357 D 883 CDS YP_002435276.1 218885955 7172741 1030453..1031256 1 NC_011769.1 PFAM: protein of unknown function DUF140; KEGG: dde:Dde_2297 hypothetical protein; hypothetical protein 1031256 7172741 DvMF_0852 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435276.1 1030453 D 883 CDS YP_002435277.1 218885956 7172742 1031269..1032090 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2298 ATPase; ABC transporter 1032090 7172742 DvMF_0853 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435277.1 1031269 D 883 CDS YP_002435278.1 218885957 7172743 1032199..1032645 1 NC_011769.1 PFAM: hypothetical protein; KEGG: dde:Dde_2299 ABC transporter substrate-binding protein; hypothetical protein 1032645 7172743 DvMF_0854 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435278.1 1032199 D 883 CDS YP_002435279.1 218885958 7172744 1032648..1033352 1 NC_011769.1 PFAM: toluene tolerance family protein; KEGG: lip:LI0234 ABC-type transporter involved in resistance to organic solvents, auxiliary component; ABC transporter 1033352 7172744 DvMF_0855 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435279.1 1032648 D 883 CDS YP_002435280.1 218885959 7172745 1033393..1034172 1 NC_011769.1 PFAM: VacJ family lipoprotein; KEGG: dde:Dde_2301 surface lipoprotein-like; VacJ family lipoprotein 1034172 7172745 DvMF_0856 Desulfovibrio vulgaris str. 'Miyazaki F' VacJ family lipoprotein YP_002435280.1 1033393 D 883 CDS YP_002435281.1 218885960 7172746 complement(1034493..1034810) 1 NC_011769.1 PFAM: cupin; KEGG: dde:Dde_2303 hypothetical protein; cupin 1034810 7172746 DvMF_0857 Desulfovibrio vulgaris str. 'Miyazaki F' cupin YP_002435281.1 1034493 R 883 CDS YP_002435282.1 218885961 7172747 1035310..1035669 1 NC_011769.1 KEGG: dde:Dde_2304 hypothetical protein; hypothetical protein 1035669 7172747 DvMF_0858 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435282.1 1035310 D 883 CDS YP_002435283.1 218885962 7172748 1035666..1036271 1 NC_011769.1 PFAM: protein of unknown function DUF340 membrane; KEGG: dde:Dde_2305 hypothetical protein; hypothetical protein 1036271 7172748 DvMF_0859 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435283.1 1035666 D 883 CDS YP_002435284.1 218885963 7172749 1036462..1037202 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_2306 extracellular solute-binding protein; family 3 extracellular solute-binding protein 1037202 7172749 DvMF_0860 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002435284.1 1036462 D 883 CDS YP_002435285.1 218885964 7172750 1037292..1038083 1 NC_011769.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2307 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 1038083 7172750 DvMF_0861 Desulfovibrio vulgaris str. 'Miyazaki F' polar amino acid ABC transporter inner membrane protein YP_002435285.1 1037292 D 883 CDS YP_002435286.1 218885965 7172751 1038070..1038816 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2308 ATPase; ABC transporter 1038816 7172751 DvMF_0862 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435286.1 1038070 D 883 CDS YP_002435287.1 218885966 7172752 complement(1039060..1039740) 1 NC_011769.1 hypothetical protein 1039740 7172752 DvMF_0863 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435287.1 1039060 R 883 CDS YP_002435288.1 218885967 7172753 complement(1040277..1043180) 1 NC_011769.1 KEGG: dde:Dde_2309 metal dependent phosphohydrolase; PFAM: amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase HD region; UTP-GlnB uridylyltransferase, GlnD 1043180 7172753 DvMF_0864 Desulfovibrio vulgaris str. 'Miyazaki F' UTP-GlnB uridylyltransferase, GlnD YP_002435288.1 1040277 R 883 CDS YP_002435289.1 218885968 7172754 complement(1043271..1043609) 1 NC_011769.1 PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_2310 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 1043609 7172754 DvMF_0865 Desulfovibrio vulgaris str. 'Miyazaki F' nitrogen regulatory protein P-II YP_002435289.1 1043271 R 883 CDS YP_002435290.1 218885969 7172755 complement(1043694..1044902) 1 NC_011769.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dde:Dde_2311 ammonium transporter; ammonium transporter 1044902 7172755 DvMF_0866 Desulfovibrio vulgaris str. 'Miyazaki F' ammonium transporter YP_002435290.1 1043694 R 883 CDS YP_002435291.1 218885970 7172756 1045332..1045844 1 NC_011769.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_2313 thiol peroxidase (atypical 2-Cys peroxiredoxin); redoxin 1045844 7172756 DvMF_0867 Desulfovibrio vulgaris str. 'Miyazaki F' redoxin YP_002435291.1 1045332 D 883 CDS YP_002435292.1 218885971 7172757 1046375..1046848 1 NC_011769.1 KEGG: dde:Dde_2314 hypothetical protein; hypothetical protein 1046848 7172757 DvMF_0868 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435292.1 1046375 D 883 CDS YP_002435293.1 218885972 7172758 complement(1046977..1047213) 1 NC_011769.1 KEGG: dde:Dde_2315 hypothetical protein; hypothetical protein 1047213 7172758 DvMF_0869 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435293.1 1046977 R 883 CDS YP_002435294.1 218885973 7172759 1047322..1049592 1 NC_011769.1 PFAM: RNA binding S1 domain protein; SMART: DNA-binding protein; Resolvase RNase H domain protein fold; KEGG: dde:Dde_2316 RNA-binding domain-containing protein; RNA binding S1 domain-containing protein 1049592 7172759 DvMF_0870 Desulfovibrio vulgaris str. 'Miyazaki F' RNA binding S1 domain-containing protein YP_002435294.1 1047322 D 883 CDS YP_002435295.1 218885974 7172760 complement(1049753..1052377) 1 NC_011769.1 KEGG: dde:Dde_2351 hypothetical protein; hypothetical protein 1052377 7172760 DvMF_0871 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435295.1 1049753 R 883 CDS YP_002435296.1 218885975 7172761 1052430..1052792 1 NC_011769.1 KEGG: dde:Dde_2352 hypothetical protein; hypothetical protein 1052792 7172761 DvMF_0872 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435296.1 1052430 D 883 CDS YP_002435297.1 218885976 7172762 1053124..1053564 1 NC_011769.1 PFAM: nuclease (SNase domain protein); KEGG: dde:Dde_2354 nuclease (SNase-like); nuclease 1053564 7172762 DvMF_0873 Desulfovibrio vulgaris str. 'Miyazaki F' nuclease YP_002435297.1 1053124 D 883 CDS YP_002435298.1 218885977 7172763 complement(1053857..1055221) 1 NC_011769.1 PFAM: sodium:neurotransmitter symporter; KEGG: dde:Dde_2371 sodium-dependent symporter family protein; sodium:neurotransmitter symporter 1055221 7172763 DvMF_0874 Desulfovibrio vulgaris str. 'Miyazaki F' sodium:neurotransmitter symporter YP_002435298.1 1053857 R 883 CDS YP_002435299.1 218885978 7172764 complement(1055529..1056635) 1 NC_011769.1 PFAM: thiamine biosynthesis protein; KEGG: dde:Dde_2372 hypothetical protein; thiamine biosynthesis protein 1056635 7172764 DvMF_0875 Desulfovibrio vulgaris str. 'Miyazaki F' thiamine biosynthesis protein YP_002435299.1 1055529 R 883 CDS YP_002435300.1 218885979 7172765 1056936..1058009 1 NC_011769.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1058009 recA 7172765 recA Desulfovibrio vulgaris str. 'Miyazaki F' recombinase A YP_002435300.1 1056936 D 883 CDS YP_002435301.1 218885980 7172766 1058114..1060753 1 NC_011769.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1060753 alaS 7172766 alaS Desulfovibrio vulgaris str. 'Miyazaki F' alanyl-tRNA synthetase YP_002435301.1 1058114 D 883 CDS YP_002435302.1 218885981 7172767 complement(1061141..1062562) 1 NC_011769.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: sit:TM1040_2627 protein of unknown function UPF0052 and CofD; hypothetical protein 1062562 7172767 DvMF_0878 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435302.1 1061141 R 883 CDS YP_002435303.1 218885982 7172768 complement(1062552..1062815) 1 NC_011769.1 hypothetical protein 1062815 7172768 DvMF_0879 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435303.1 1062552 R 883 CDS YP_002435304.1 218885983 7172769 complement(1062990..1063670) 1 NC_011769.1 TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: dde:Dde_2385 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 1063670 7172769 DvMF_0880 Desulfovibrio vulgaris str. 'Miyazaki F' phosphate uptake regulator PhoU YP_002435304.1 1062990 R 883 CDS YP_002435305.1 218885984 7172770 complement(1063778..1064545) 1 NC_011769.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1064545 7172770 DvMF_0881 Desulfovibrio vulgaris str. 'Miyazaki F' phosphate transporter ATP-binding protein YP_002435305.1 1063778 R 883 CDS YP_002435306.1 218885985 7172771 complement(1064865..1065557) 1 NC_011769.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dde:Dde_2387 two component transcriptional regulator; two component transcriptional regulator, winged helix family 1065557 7172771 DvMF_0882 Desulfovibrio vulgaris str. 'Miyazaki F' two component transcriptional regulator, winged helix family YP_002435306.1 1064865 R 883 CDS YP_002435307.1 218885986 7172772 complement(1065847..1066452) 1 NC_011769.1 PFAM: 3'-5' exonuclease; KEGG: dde:Dde_2388 3'-5' exonuclease; 3'-5' exonuclease 1066452 7172772 DvMF_0883 Desulfovibrio vulgaris str. 'Miyazaki F' 3'-5' exonuclease YP_002435307.1 1065847 R 883 CDS YP_002435308.1 218885987 7172774 complement(1068291..1069094) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like; nitrite and sulfite reductase 4Fe-4S region 1069094 7172774 DvMF_0885 Desulfovibrio vulgaris str. 'Miyazaki F' nitrite and sulfite reductase 4Fe-4S region YP_002435308.1 1068291 R 883 CDS YP_002435309.1 218885988 7172775 complement(1069223..1070659) 1 NC_011769.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1070659 trmE 7172775 trmE Desulfovibrio vulgaris str. 'Miyazaki F' tRNA modification GTPase TrmE YP_002435309.1 1069223 R 883 CDS YP_002435310.1 218885989 7172776 complement(1070845..1072341) 1 NC_011769.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dde:Dde_2393 single-stranded nucleic acid binding R3H; single-stranded nucleic acid binding R3H domain-containing protein 1072341 7172776 DvMF_0887 Desulfovibrio vulgaris str. 'Miyazaki F' single-stranded nucleic acid binding R3H domain-containing protein YP_002435310.1 1070845 R 883 CDS YP_002435311.1 218885990 7172777 complement(1072500..1074119) 1 NC_011769.1 PFAM: hypothetical protein; KEGG: dde:Dde_2394 protein translocase subunit YidC; hypothetical protein 1074119 7172777 DvMF_0888 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435311.1 1072500 R 883 CDS YP_002435312.1 218885991 7172778 complement(1074109..1074426) 1 NC_011769.1 PFAM: protein of unknown function DUF37; KEGG: dde:Dde_2395 hypothetical protein; hypothetical protein 1074426 7172778 DvMF_0889 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435312.1 1074109 R 883 CDS YP_002435313.1 218885992 7172779 complement(1074423..1074965) 1 NC_011769.1 TIGRFAM: ribonuclease P; PFAM: ribonuclease P protein; KEGG: dde:Dde_2396 ribonuclease P; ribonuclease P 1074965 7172779 DvMF_0890 Desulfovibrio vulgaris str. 'Miyazaki F' ribonuclease P YP_002435313.1 1074423 R 883 CDS YP_002435314.1 218885993 7172780 complement(1074953..1075090) 1 NC_011769.1 PFAM: ribosomal protein L34; KEGG: pca:Pcar_3146 ribosomal protein L34; 50S ribosomal protein L34 1075090 7172780 DvMF_0891 Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L34 YP_002435314.1 1074953 R 883 CDS YP_002435315.1 218885994 7172781 complement(1075631..1076659) 1 NC_011769.1 KEGG: dde:Dde_2398 hypothetical protein; hypothetical protein 1076659 7172781 DvMF_0892 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435315.1 1075631 R 883 CDS YP_002435316.1 218885995 7172782 complement(1076836..1077468) 1 NC_011769.1 KEGG: dde:Dde_2399 hypothetical protein; hypothetical protein 1077468 7172782 DvMF_0893 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435316.1 1076836 R 883 CDS YP_002435317.1 218885996 7172783 complement(1077690..1078352) 1 NC_011769.1 PFAM: Hpt domain protein; KEGG: hha:Hhal_0647 multi-sensor hybrid histidine kinase; Hpt protein 1078352 7172783 DvMF_0894 Desulfovibrio vulgaris str. 'Miyazaki F' Hpt protein YP_002435317.1 1077690 R 883 CDS YP_002435318.1 218885997 7172784 1078544..1079413 1 NC_011769.1 KEGG: dde:Dde_1191 hypothetical protein; hypothetical protein 1079413 7172784 DvMF_0895 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435318.1 1078544 D 883 CDS YP_002435319.1 218885998 7172785 1079785..1080477 1 NC_011769.1 KEGG: dde:Dde_2401 hypothetical protein; hypothetical protein 1080477 7172785 DvMF_0896 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435319.1 1079785 D 883 CDS YP_002435320.1 218885999 7172786 complement(1080643..1081545) 1 NC_011769.1 KEGG: dde:Dde_2402 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: xylose isomerase; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 1081545 7172786 DvMF_0897 Desulfovibrio vulgaris str. 'Miyazaki F' apurinic endonuclease Apn1 YP_002435320.1 1080643 R 883 CDS YP_002435321.1 218886000 7172787 complement(1082059..1083585) 1 NC_011769.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: dde:Dde_1463 mercuric reductase; pyridine nucleotide-disulfide oxidoreductase dimerisation subunit 1083585 7172787 DvMF_0898 Desulfovibrio vulgaris str. 'Miyazaki F' pyridine nucleotide-disulfide oxidoreductase dimerisation subunit YP_002435321.1 1082059 R 883 CDS YP_002435322.1 218886001 7172788 complement(1083563..1084339) 1 NC_011769.1 PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein; hypothetical protein 1084339 7172788 DvMF_0899 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435322.1 1083563 R 883 CDS YP_002435323.1 218886002 7172789 complement(1084479..1085576) 1 NC_011769.1 PFAM: glucokinase; KEGG: dde:Dde_1461 glucokinase; glucokinase 1085576 7172789 DvMF_0900 Desulfovibrio vulgaris str. 'Miyazaki F' glucokinase YP_002435323.1 1084479 R 883 CDS YP_002435324.1 218886003 7172790 complement(1085701..1086051) 1 NC_011769.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1460 hypothetical protein; type IV pilus assembly PilZ 1086051 7172790 DvMF_0901 Desulfovibrio vulgaris str. 'Miyazaki F' type IV pilus assembly PilZ YP_002435324.1 1085701 R 883 CDS YP_002435325.1 218886004 7172791 complement(1086319..1087098) 1 NC_011769.1 hypothetical protein 1087098 7172791 DvMF_0902 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435325.1 1086319 R 883 CDS YP_002435326.1 218886005 7172792 1087254..1087910 1 NC_011769.1 PFAM: damage inducible protein CinA; KEGG: pap:PSPA7_1522 hypothetical protein; damage inducible protein CinA 1087910 7172792 DvMF_0903 Desulfovibrio vulgaris str. 'Miyazaki F' damage inducible protein CinA YP_002435326.1 1087254 D 883 CDS YP_002435327.1 218886006 7172793 1088007..1088822 1 NC_011769.1 TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: ank:AnaeK_4070 2'-5' RNA ligase; 2'-5' RNA ligase 1088822 7172793 DvMF_0904 Desulfovibrio vulgaris str. 'Miyazaki F' 2'-5' RNA ligase YP_002435327.1 1088007 D 883 CDS YP_002435328.1 218886007 7172794 complement(1089115..1089660) 1 NC_011769.1 KEGG: dde:Dde_1455 hypothetical protein; hypothetical protein 1089660 7172794 DvMF_0905 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435328.1 1089115 R 883 CDS YP_002435329.1 218886008 7172795 1089937..1090380 1 NC_011769.1 PFAM: UspA domain protein; KEGG: dde:Dde_1454 universal stress protein; UspA domain-containing protein 1090380 7172795 DvMF_0906 Desulfovibrio vulgaris str. 'Miyazaki F' UspA domain-containing protein YP_002435329.1 1089937 D 883 CDS YP_002435330.1 218886009 7172796 complement(1090604..1091962) 1 NC_011769.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0642 NADH dehydrogenase; NADH dehydrogenase (ubiquinone) 1091962 7172796 DvMF_0907 Desulfovibrio vulgaris str. 'Miyazaki F' NADH dehydrogenase (ubiquinone) YP_002435330.1 1090604 R 883 CDS YP_002435331.1 218886010 7172797 1092507..1093670 1 NC_011769.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dde:Dde_1453 histidinol phosphate aminotransferase; histidinol-phosphate aminotransferase 1093670 7172797 DvMF_0908 Desulfovibrio vulgaris str. 'Miyazaki F' histidinol-phosphate aminotransferase YP_002435331.1 1092507 D 883 CDS YP_002435332.1 218886011 7172798 1093747..1094406 1 NC_011769.1 KEGG: dde:Dde_1452 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 1094406 7172798 DvMF_0909 Desulfovibrio vulgaris str. 'Miyazaki F' cytidylate kinase YP_002435332.1 1093747 D 883 CDS YP_002435333.1 218886012 7172799 complement(1094697..1095983) 1 NC_011769.1 TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: drm:Dred_1317 uracil-xanthine permease; uracil-xanthine permease 1095983 7172799 DvMF_0910 Desulfovibrio vulgaris str. 'Miyazaki F' uracil-xanthine permease YP_002435333.1 1094697 R 883 CDS YP_002435334.1 218886013 7172800 complement(1096208..1096834) 1 NC_011769.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1096834 upp 7172800 upp Desulfovibrio vulgaris str. 'Miyazaki F' uracil phosphoribosyltransferase YP_002435334.1 1096208 R 883 CDS YP_002435335.1 218886014 7172801 1096944..1098620 1 NC_011769.1 TIGRFAM: dephospho-CoA kinase; pseudouridine synthase, RluA family; PFAM: Dephospho-CoA kinase; pseudouridine synthase; KEGG: dde:Dde_1447 pseudouridine synthase, RluD; pseudouridine synthase 1098620 7172801 DvMF_0912 Desulfovibrio vulgaris str. 'Miyazaki F' pseudouridine synthase YP_002435335.1 1096944 D 883 CDS YP_002435336.1 218886015 7172802 1098632..1099375 1 NC_011769.1 PFAM: rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein; rhomboid family protein 1099375 7172802 DvMF_0913 Desulfovibrio vulgaris str. 'Miyazaki F' rhomboid family protein YP_002435336.1 1098632 D 883 CDS YP_002435337.1 218886016 7172803 1099755..1100543 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1445 ATPase; ABC transporter 1100543 7172803 DvMF_0914 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435337.1 1099755 D 883 CDS YP_002435338.1 218886017 7172804 1100546..1101712 1 NC_011769.1 PFAM: SufBD protein; KEGG: dde:Dde_1444 hypothetical protein; SufBD protein 1101712 7172804 DvMF_0915 Desulfovibrio vulgaris str. 'Miyazaki F' SufBD protein YP_002435338.1 1100546 D 883 CDS YP_002435339.1 218886018 7172805 1101802..1102089 1 NC_011769.1 PFAM: YCII-related; KEGG: cvi:CV_4150 hypothetical protein; hypothetical protein 1102089 7172805 DvMF_0916 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435339.1 1101802 D 883 CDS YP_002435340.1 218886019 7172806 complement(1102353..1104161) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 1104161 7172806 DvMF_0917 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Cache sensor YP_002435340.1 1102353 R 883 CDS YP_002435341.1 218886020 7172812 1110689..1111306 1 NC_011769.1 KEGG: dde:Dde_2591 hypothetical protein; hypothetical protein 1111306 7172812 DvMF_0918 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435341.1 1110689 D 883 CDS YP_002435342.1 218886021 7172813 1111329..1111865 1 NC_011769.1 KEGG: dde:Dde_2592 hypothetical protein; hypothetical protein 1111865 7172813 DvMF_0919 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435342.1 1111329 D 883 CDS YP_002435343.1 218886022 7172814 1112010..1113041 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2593 oligopeptide ABC transporter permease protein; binding-protein-dependent transporters inner membrane component 1113041 7172814 DvMF_0920 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002435343.1 1112010 D 883 CDS YP_002435344.1 218886023 7172815 1113038..1113892 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2594 oligopeptide ABC transporter permease protein; binding-protein-dependent transporters inner membrane component 1113892 7172815 DvMF_0921 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002435344.1 1113038 D 883 CDS YP_002435345.1 218886024 7172816 1113896..1115659 1 NC_011769.1 KEGG: glo:Glov_3362 glycosyl transferase family 2; hypothetical protein 1115659 7172816 DvMF_0922 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435345.1 1113896 D 883 CDS YP_002435346.1 218886025 7172817 1115673..1117325 1 NC_011769.1 PFAM: SMC domain protein; KEGG: dde:Dde_2596 DNA repair protein RecN; SMC domain-containing protein 1117325 7172817 DvMF_0923 Desulfovibrio vulgaris str. 'Miyazaki F' SMC domain-containing protein YP_002435346.1 1115673 D 883 CDS YP_002435347.1 218886026 7172818 1117468..1119033 1 NC_011769.1 KEGG: dde:Dde_2597 hypothetical protein; hypothetical protein 1119033 7172818 DvMF_0924 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435347.1 1117468 D 883 CDS YP_002435348.1 218886027 7172819 complement(1119239..1122352) 1 NC_011769.1 KEGG: dde:Dde_2598 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R 1122352 7172819 DvMF_0925 Desulfovibrio vulgaris str. 'Miyazaki F' ribonuclease R YP_002435348.1 1119239 R 883 CDS YP_002435349.1 218886028 7172820 complement(1122599..1123717) 1 NC_011769.1 KEGG: dde:Dde_2600 lipid-A-disaccharide synthase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 1123717 7172820 DvMF_0926 Desulfovibrio vulgaris str. 'Miyazaki F' tetraacyldisaccharide 4'-kinase YP_002435349.1 1122599 R 883 CDS YP_002435350.1 218886029 7172821 complement(1124044..1124751) 1 NC_011769.1 PFAM: protein of unknown function UPF0005; KEGG: dde:Dde_2601 membrane protein, putaive; hypothetical protein 1124751 7172821 DvMF_0927 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435350.1 1124044 R 883 CDS YP_002435351.1 218886030 7172822 complement(1125196..1125687) 1 NC_011769.1 KEGG: kra:Krad_1656 flagellar hook-length control protein; hypothetical protein 1125687 7172822 DvMF_0928 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435351.1 1125196 R 883 CDS YP_002435352.1 218886031 7172823 1126202..1127698 1 NC_011769.1 PFAM: regulatory protein LuxR; KEGG: pca:Pcar_0664 response regulator protein; LuxR family transcriptional regulator 1127698 7172823 DvMF_0929 Desulfovibrio vulgaris str. 'Miyazaki F' LuxR family transcriptional regulator YP_002435352.1 1126202 D 883 CDS YP_002435353.1 218886032 7172824 1128058..1128780 1 NC_011769.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: spq:SPAB_02952 hypothetical protein; cytoplasmic chaperone TorD family protein 1128780 7172824 DvMF_0930 Desulfovibrio vulgaris str. 'Miyazaki F' cytoplasmic chaperone TorD family protein YP_002435353.1 1128058 D 883 CDS YP_002435354.1 218886033 7172825 1128934..1131165 1 NC_011769.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit; molybdopterin oxidoreductase 1131165 7172825 DvMF_0931 Desulfovibrio vulgaris str. 'Miyazaki F' molybdopterin oxidoreductase YP_002435354.1 1128934 D 883 CDS YP_002435355.1 218886034 7172826 1131176..1131763 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: stm:STM0612 hydrogenase protein; 4Fe-4S ferredoxin 1131763 7172826 DvMF_0932 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002435355.1 1131176 D 883 CDS YP_002435356.1 218886035 7172827 1131766..1132599 1 NC_011769.1 KEGG: sea:SeAg_B0652 molybdopterin-containing oxidoreductase membrane anchor subunit; molybdopterin-containing oxidoreductase membrane anchor subunit 1132599 7172827 DvMF_0933 Desulfovibrio vulgaris str. 'Miyazaki F' molybdopterin-containing oxidoreductase membrane anchor subunit YP_002435356.1 1131766 D 883 CDS YP_002435357.1 218886036 7172828 complement(1132703..1133608) 1 NC_011769.1 SMART: hypothetical protein; KEGG: dde:Dde_2717 hypothetical protein; hypothetical protein 1133608 7172828 DvMF_0934 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435357.1 1132703 R 883 CDS YP_002435358.1 218886037 7172829 1133707..1136172 1 NC_011769.1 PFAM: glycoside hydrolase family 57; KEGG: dde:Dde_2603 hypothetical protein; glycoside hydrolase family protein 1136172 7172829 DvMF_0935 Desulfovibrio vulgaris str. 'Miyazaki F' glycoside hydrolase family protein YP_002435358.1 1133707 D 883 CDS YP_002435359.1 218886038 7172830 complement(1136360..1136827) 1 NC_011769.1 KEGG: mbr:MONBRDRAFT_25873 hypothetical protein; hypothetical protein 1136827 7172830 DvMF_0936 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435359.1 1136360 R 883 CDS YP_002435360.1 218886039 7172831 1137169..1138017 1 NC_011769.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_3636 ferredoxin--NADP(+) reductase subunit alpha; ferredoxin-NADP(+) reductase subunit alpha 1138017 7172831 DvMF_0937 Desulfovibrio vulgaris str. 'Miyazaki F' ferredoxin-NADP(+) reductase subunit alpha YP_002435360.1 1137169 D 883 CDS YP_002435361.1 218886040 7172832 1138022..1139467 1 NC_011769.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 1139467 7172832 DvMF_0938 Desulfovibrio vulgaris str. 'Miyazaki F' oxidoreductase YP_002435361.1 1138022 D 883 CDS YP_002435362.1 218886041 7172833 1139774..1140064 1 NC_011769.1 KEGG: dde:Dde_1058 hypothetical protein; hypothetical protein 1140064 7172833 DvMF_0939 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435362.1 1139774 D 883 CDS YP_002435363.1 218886042 7172834 1140232..1141056 1 NC_011769.1 KEGG: dde:Dde_1057 histidinol-phosphate phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; HisJ family histidinol phosphate phosphatase 1141056 7172834 DvMF_0940 Desulfovibrio vulgaris str. 'Miyazaki F' HisJ family histidinol phosphate phosphatase YP_002435363.1 1140232 D 883 CDS YP_002435364.1 218886043 7172835 1141160..1142848 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1055 ATPase; ABC transporter 1142848 7172835 DvMF_0941 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435364.1 1141160 D 883 CDS YP_002435365.1 218886044 7172836 1142845..1143618 1 NC_011769.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dde:Dde_1054 phosphoribosylanthranilate isomerase; N-(5 -phosphoribosyl)anthranilate isomerase 1143618 7172836 DvMF_0942 Desulfovibrio vulgaris str. 'Miyazaki F' N-(5 -phosphoribosyl)anthranilate isomerase YP_002435365.1 1142845 D 883 CDS YP_002435366.1 218886045 7172837 1143950..1144045 1 NC_011769.1 hypothetical protein 1144045 7172837 DvMF_0943 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435366.1 1143950 D 883 CDS YP_002435367.1 218886046 7172838 1144454..1145299 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pmy:Pmen_3089 protein of unknown function DUF6, transmembrane; hypothetical protein 1145299 7172838 DvMF_0944 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435367.1 1144454 D 883 CDS YP_002435368.1 218886047 7172839 1145912..1146946 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1052 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 1146946 7172839 DvMF_0945 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002435368.1 1145912 D 883 CDS YP_002435369.1 218886048 7172840 1147403..1148260 1 NC_011769.1 PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_1051 HtpX-2 peptidase; peptidase M48 Ste24p 1148260 7172840 DvMF_0946 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M48 Ste24p YP_002435369.1 1147403 D 883 CDS YP_002435370.1 218886049 7172841 1148506..1148973 1 NC_011769.1 PFAM: thioesterase superfamily protein; KEGG: dde:Dde_1049 phenylacetic acid degradation-related protein; thioesterase superfamily protein 1148973 7172841 DvMF_0947 Desulfovibrio vulgaris str. 'Miyazaki F' thioesterase superfamily protein YP_002435370.1 1148506 D 883 CDS YP_002435371.1 218886050 7172842 1149403..1151166 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lip:LIC103 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1151166 7172842 DvMF_0948 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002435371.1 1149403 D 883 CDS YP_002435372.1 218886051 7172843 complement(1151326..1152135) 1 NC_011769.1 hypothetical protein 1152135 7172843 DvMF_0949 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435372.1 1151326 R 883 CDS YP_002435373.1 218886052 7172844 complement(1152367..1153191) 1 NC_011769.1 KEGG: lip:LI1049 NA; hypothetical protein 1153191 7172844 DvMF_0950 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435373.1 1152367 R 883 CDS YP_002435374.1 218886053 7172845 complement(1153672..1154961) 1 NC_011769.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1154961 7172845 DvMF_0951 Desulfovibrio vulgaris str. 'Miyazaki F' cell division protein FtsZ YP_002435374.1 1153672 R 883 CDS YP_002435375.1 218886054 7172846 complement(1155005..1156231) 1 NC_011769.1 PFAM: cell division protein FtsA; KEGG: dde:Dde_1046 cell division protein FtsA; cell division protein FtsA 1156231 7172846 DvMF_0952 Desulfovibrio vulgaris str. 'Miyazaki F' cell division protein FtsA YP_002435375.1 1155005 R 883 CDS YP_002435376.1 218886055 7172847 complement(1156302..1157141) 1 NC_011769.1 PFAM: polypeptide-transport-associated domain protein FtsQ-type; KEGG: dde:Dde_1045 cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type 1157141 7172847 DvMF_0953 Desulfovibrio vulgaris str. 'Miyazaki F' polypeptide-transport-associated domain protein FtsQ-type YP_002435376.1 1156302 R 883 CDS YP_002435377.1 218886056 7172848 complement(1157132..1158052) 1 NC_011769.1 KEGG: dde:Dde_1044 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 1158052 7172848 DvMF_0954 Desulfovibrio vulgaris str. 'Miyazaki F' UDP-N-acetylenolpyruvoylglucosamine reductase YP_002435377.1 1157132 R 883 CDS YP_002435378.1 218886057 7172849 complement(1158054..1159421) 1 NC_011769.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1159421 murC 7172849 murC Desulfovibrio vulgaris str. 'Miyazaki F' UDP-N-acetylmuramate--L-alanine ligase YP_002435378.1 1158054 R 883 CDS YP_002435379.1 218886058 7172850 complement(1159708..1160856) 1 NC_011769.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1160856 murG 7172850 murG Desulfovibrio vulgaris str. 'Miyazaki F' undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_002435379.1 1159708 R 883 CDS YP_002435380.1 218886059 7172851 complement(1160909..1162093) 1 NC_011769.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dde:Dde_1041 cell cycle protein FtsW; cell division protein FtsW 1162093 7172851 DvMF_0957 Desulfovibrio vulgaris str. 'Miyazaki F' cell division protein FtsW YP_002435380.1 1160909 R 883 CDS YP_002435381.1 218886060 7172852 complement(1162090..1163427) 1 NC_011769.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dde:Dde_1040 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 1163427 7172852 DvMF_0958 Desulfovibrio vulgaris str. 'Miyazaki F' UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_002435381.1 1162090 R 883 CDS YP_002435382.1 218886061 7172853 complement(1163594..1164670) 1 NC_011769.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1164670 mraY 7172853 mraY Desulfovibrio vulgaris str. 'Miyazaki F' phospho-N-acetylmuramoyl-pentapeptide- transferase YP_002435382.1 1163594 R 883 CDS YP_002435383.1 218886062 7172854 complement(1164827..1166311) 1 NC_011769.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dde:Dde_1037 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase 1166311 7172854 DvMF_0960 Desulfovibrio vulgaris str. 'Miyazaki F' UDP-N-acetylmuramyl tripeptide synthetase YP_002435383.1 1164827 R 883 CDS YP_002435384.1 218886063 7172855 complement(1166324..1168288) 1 NC_011769.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: dde:Dde_1036 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 1168288 7172855 DvMF_0961 Desulfovibrio vulgaris str. 'Miyazaki F' peptidoglycan glycosyltransferase YP_002435384.1 1166324 R 883 CDS YP_002435385.1 218886064 7172856 complement(1168453..1168740) 1 NC_011769.1 KEGG: dde:Dde_1035 hypothetical protein; hypothetical protein 1168740 7172856 DvMF_0962 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435385.1 1168453 R 883 CDS YP_002435386.1 218886065 7172857 complement(1168737..1169822) 1 NC_011769.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dde:Dde_1034 methyltransferase; S-adenosyl-methyltransferase MraW 1169822 mraW 7172857 mraW Desulfovibrio vulgaris str. 'Miyazaki F' S-adenosyl-methyltransferase MraW YP_002435386.1 1168737 R 883 CDS YP_002435387.1 218886066 7172858 complement(1169866..1170315) 1 NC_011769.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1170315 7172858 DvMF_0964 Desulfovibrio vulgaris str. 'Miyazaki F' cell division protein MraZ YP_002435387.1 1169866 R 883 CDS YP_002435388.1 218886067 7172859 1170875..1172287 1 NC_011769.1 KEGG: dde:Dde_1032 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: HpcH/HpaI aldolase; pyruvate kinase barrel; pyruvate kinase alpha/beta; pyruvate kinase 1172287 7172859 DvMF_0965 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate kinase YP_002435388.1 1170875 D 883 CDS YP_002435389.1 218886068 7172860 1172409..1173440 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1031 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1173440 7172860 DvMF_0966 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002435389.1 1172409 D 883 CDS YP_002435390.1 218886069 7172861 complement(1173724..1174221) 1 NC_011769.1 PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein; XRE family transcriptional regulator 1174221 7172861 DvMF_0967 Desulfovibrio vulgaris str. 'Miyazaki F' XRE family transcriptional regulator YP_002435390.1 1173724 R 883 CDS YP_002435391.1 218886070 7172862 complement(1174798..1176069) 1 NC_011769.1 KEGG: dde:Dde_2605 hypothetical protein; hypothetical protein 1176069 7172862 DvMF_0968 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435391.1 1174798 R 883 CDS YP_002435392.1 218886071 7172863 1176576..1177010 1 NC_011769.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1177010 rplM 7172863 rplM Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L13 YP_002435392.1 1176576 D 883 CDS YP_002435393.1 218886072 7172864 1177033..1177425 1 NC_011769.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1177425 rpsI 7172864 rpsI Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S9 YP_002435393.1 1177033 D 883 CDS YP_002435394.1 218886073 7172865 1177685..1178242 1 NC_011769.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 1178242 aroK 7172865 aroK Desulfovibrio vulgaris str. 'Miyazaki F' shikimate kinase YP_002435394.1 1177685 D 883 CDS YP_002435395.1 218886074 7172866 1178244..1178981 1 NC_011769.1 KEGG: dde:Dde_2610 hypothetical protein; hypothetical protein 1178981 7172866 DvMF_0972 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435395.1 1178244 D 883 CDS YP_002435396.1 218886075 7172867 1179100..1179660 1 NC_011769.1 KEGG: dde:Dde_2611 lipoprotein; lipoprotein 1179660 7172867 DvMF_0973 Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein YP_002435396.1 1179100 D 883 CDS YP_002435397.1 218886076 7172868 complement(1179945..1180343) 1 NC_011769.1 KEGG: lip:LI0064 predicted transcriptional regulator; MucR family transcriptional regulator 1180343 7172868 DvMF_0974 Desulfovibrio vulgaris str. 'Miyazaki F' MucR family transcriptional regulator YP_002435397.1 1179945 R 883 CDS YP_002435398.1 218886077 7172869 complement(1180904..1182085) 1 NC_011769.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1182085 pgk 7172869 pgk Desulfovibrio vulgaris str. 'Miyazaki F' phosphoglycerate kinase YP_002435398.1 1180904 R 883 CDS YP_002435399.1 218886078 7172870 complement(1182458..1184452) 1 NC_011769.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1184452 7172870 DvMF_0976 Desulfovibrio vulgaris str. 'Miyazaki F' transketolase YP_002435399.1 1182458 R 883 CDS YP_002435400.1 218886079 7172871 complement(1184879..1185538) 1 NC_011769.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: dde:Dde_2632 ribulose-5-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 1185538 7172871 DvMF_0977 Desulfovibrio vulgaris str. 'Miyazaki F' ribulose-phosphate 3-epimerase YP_002435400.1 1184879 R 883 CDS YP_002435401.1 218886080 7172872 complement(1185738..1186502) 1 NC_011769.1 PFAM: regulatory protein MerR; KEGG: dde:Dde_2633 MerR family transcriptional regulator; MerR family transcriptional regulator 1186502 7172872 DvMF_0978 Desulfovibrio vulgaris str. 'Miyazaki F' MerR family transcriptional regulator YP_002435401.1 1185738 R 883 CDS YP_002435402.1 218886081 7172873 complement(1186730..1189147) 1 NC_011769.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1189147 pheT 7172873 pheT Desulfovibrio vulgaris str. 'Miyazaki F' phenylalanyl-tRNA synthetase subunit beta YP_002435402.1 1186730 R 883 CDS YP_002435403.1 218886082 7172874 complement(1189403..1190440) 1 NC_011769.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1190440 pheS 7172874 pheS Desulfovibrio vulgaris str. 'Miyazaki F' phenylalanyl-tRNA synthetase subunit alpha YP_002435403.1 1189403 R 883 CDS YP_002435404.1 218886083 7172875 complement(1190462..1190815) 1 NC_011769.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1190815 rplT 7172875 rplT Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L20 YP_002435404.1 1190462 R 883 CDS YP_002435405.1 218886084 7172876 complement(1191086..1191283) 1 NC_011769.1 PFAM: ribosomal protein L35; KEGG: dde:Dde_2637 50S ribosomal protein L35; 50S ribosomal protein L35 1191283 rpmI 7172876 rpmI Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L35 YP_002435405.1 1191086 R 883 CDS YP_002435406.1 218886085 7172877 complement(1191499..1192029) 1 NC_011769.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1192029 infC 7172877 infC Desulfovibrio vulgaris str. 'Miyazaki F' translation initiation factor IF-3 YP_002435406.1 1191499 R 883 CDS YP_002435407.1 218886086 7172878 complement(1192037..1193971) 1 NC_011769.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1193971 thrS 7172878 thrS Desulfovibrio vulgaris str. 'Miyazaki F' threonyl-tRNA synthetase YP_002435407.1 1192037 R 883 CDS YP_002435408.1 218886087 7172880 1195101..1197143 1 NC_011769.1 PFAM: K potassium transporter; KEGG: sfu:Sfum_3574 K+ potassium transporter; K potassium transporter 1197143 7172880 DvMF_0985 Desulfovibrio vulgaris str. 'Miyazaki F' K potassium transporter YP_002435408.1 1195101 D 883 CDS YP_002435409.1 218886088 7172881 complement(1197455..1198594) 1 NC_011769.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: gbm:Gbem_2040 2-hydroxyglutaryl-CoA dehydratase D-component; 2-hydroxyglutaryl-CoA dehydratase subunit D 1198594 7172881 DvMF_0986 Desulfovibrio vulgaris str. 'Miyazaki F' 2-hydroxyglutaryl-CoA dehydratase subunit D YP_002435409.1 1197455 R 883 CDS YP_002435410.1 218886089 7172882 complement(1198861..1199670) 1 NC_011769.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gsu:GSU2520 (R)-2-hydroxyglutaryl-CoA dehydratase activator; CoA-substrate-specific enzyme activase 1199670 7172882 DvMF_0987 Desulfovibrio vulgaris str. 'Miyazaki F' CoA-substrate-specific enzyme activase YP_002435410.1 1198861 R 883 CDS YP_002435411.1 218886090 7172883 1200225..1201844 1 NC_011769.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1201844 7172883 DvMF_0988 Desulfovibrio vulgaris str. 'Miyazaki F' hydroxylamine reductase YP_002435411.1 1200225 D 883 CDS YP_002435412.1 218886091 7172884 1202069..1202950 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2642 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 1202950 7172884 DvMF_0989 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002435412.1 1202069 D 883 CDS YP_002435413.1 218886092 7172885 1203243..1204403 1 NC_011769.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_1164 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 1204403 7172885 DvMF_0990 Desulfovibrio vulgaris str. 'Miyazaki F' iron-containing alcohol dehydrogenase YP_002435413.1 1203243 D 883 CDS YP_002435414.1 218886093 7172886 1204387..1206210 1 NC_011769.1 KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 1206210 7172886 DvMF_0991 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction histidine kinase, nitrogen specific, NtrB YP_002435414.1 1204387 D 883 CDS YP_002435415.1 218886094 7172887 complement(1206307..1206990) 1 NC_011769.1 KEGG: bvi:Bcep1808_6345 diguanylate cyclase; hypothetical protein 1206990 7172887 DvMF_0992 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435415.1 1206307 R 883 CDS YP_002435416.1 218886095 7172888 complement(1207197..1207886) 1 NC_011769.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dde:Dde_2644 Crp/FNR family transcriptional regulator; Crp/Fnr family transcriptional regulator 1207886 7172888 DvMF_0993 Desulfovibrio vulgaris str. 'Miyazaki F' Crp/Fnr family transcriptional regulator YP_002435416.1 1207197 R 883 CDS YP_002435417.1 218886096 7172889 1208096..1208602 1 NC_011769.1 KEGG: dde:Dde_2645 hypothetical protein; hypothetical protein 1208602 7172889 DvMF_0994 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435417.1 1208096 D 883 CDS YP_002435418.1 218886097 7172890 complement(1208747..1210003) 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: pth:PTH_0998 HD-GYP domain; metal dependent phosphohydrolase 1210003 7172890 DvMF_0995 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002435418.1 1208747 R 883 CDS YP_002435419.1 218886098 7172891 complement(1210482..1211876) 1 NC_011769.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1211876 gltX 7172891 gltX Desulfovibrio vulgaris str. 'Miyazaki F' glutamyl-tRNA synthetase YP_002435419.1 1210482 R 883 CDS YP_002435420.1 218886099 7172892 complement(1212134..1212367) 1 NC_011769.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: sat:SYN_02452 NifU-like domain protein; nitrogen-fixing NifU domain-containing protein 1212367 7172892 DvMF_0997 Desulfovibrio vulgaris str. 'Miyazaki F' nitrogen-fixing NifU domain-containing protein YP_002435420.1 1212134 R 883 CDS YP_002435421.1 218886100 7172893 complement(1212682..1213581) 1 NC_011769.1 KEGG: dde:Dde_2650 hypothetical protein; hypothetical protein 1213581 7172893 DvMF_0998 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435421.1 1212682 R 883 CDS YP_002435422.1 218886101 7172894 complement(1213568..1214989) 1 NC_011769.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2651 MATE efflux family protein; MATE efflux family protein 1214989 7172894 DvMF_0999 Desulfovibrio vulgaris str. 'Miyazaki F' MATE efflux family protein YP_002435422.1 1213568 R 883 CDS YP_002435423.1 218886102 7172895 complement(1215217..1216215) 1 NC_011769.1 KEGG: dde:Dde_2654 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; biotin--acetyl-CoA-carboxylase ligase 1216215 7172895 DvMF_1000 Desulfovibrio vulgaris str. 'Miyazaki F' biotin--acetyl-CoA-carboxylase ligase YP_002435423.1 1215217 R 883 CDS YP_002435424.1 218886103 7172896 1216312..1217406 1 NC_011769.1 KEGG: dde:Dde_2655 biotin synthase; TIGRFAM: biotin synthase; PFAM: radical SAM protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 1217406 7172896 DvMF_1001 Desulfovibrio vulgaris str. 'Miyazaki F' biotin synthase YP_002435424.1 1216312 D 883 CDS YP_002435425.1 218886104 7172897 1217403..1218878 1 NC_011769.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: dde:Dde_2656 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1218878 7172897 DvMF_1002 Desulfovibrio vulgaris str. 'Miyazaki F' adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_002435425.1 1217403 D 883 CDS YP_002435426.1 218886105 7172898 1218875..1219492 1 NC_011769.1 KEGG: sat:SYN_03246 hypothetical cytosolic protein; hypothetical protein 1219492 7172898 DvMF_1003 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435426.1 1218875 D 883 CDS YP_002435427.1 218886106 7172899 1219486..1220316 1 NC_011769.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_2658 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR 1220316 7172899 DvMF_1004 Desulfovibrio vulgaris str. 'Miyazaki F' short-chain dehydrogenase/reductase SDR YP_002435427.1 1219486 D 883 CDS YP_002435428.1 218886107 7172900 1220388..1220801 1 NC_011769.1 KEGG: dde:Dde_2659 acyl carrier protein; acyl carrier protein 1220801 7172900 DvMF_1005 Desulfovibrio vulgaris str. 'Miyazaki F' acyl carrier protein YP_002435428.1 1220388 D 883 CDS YP_002435429.1 218886108 7172901 1220843..1222219 1 NC_011769.1 PFAM: beta-ketoacyl synthase; KEGG: dde:Dde_2660 beta-ketoacyl synthase; beta-ketoacyl synthase 1222219 7172901 DvMF_1006 Desulfovibrio vulgaris str. 'Miyazaki F' beta-ketoacyl synthase YP_002435429.1 1220843 D 883 CDS YP_002435430.1 218886109 7172902 1222216..1222743 1 NC_011769.1 KEGG: dde:Dde_2661 hypothetical protein; hypothetical protein 1222743 7172902 DvMF_1007 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435430.1 1222216 D 883 CDS YP_002435431.1 218886110 7172903 1222770..1224110 1 NC_011769.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_2662 8-amino-7-oxononanoate synthase; class I and II aminotransferase 1224110 7172903 DvMF_1008 Desulfovibrio vulgaris str. 'Miyazaki F' class I and II aminotransferase YP_002435431.1 1222770 D 883 CDS YP_002435432.1 218886111 7172904 1224107..1224850 1 NC_011769.1 TIGRFAM: dethiobiotin synthase; KEGG: dde:Dde_2663 dethiobiotin synthase; dethiobiotin synthase 1224850 7172904 DvMF_1009 Desulfovibrio vulgaris str. 'Miyazaki F' dethiobiotin synthase YP_002435432.1 1224107 D 883 CDS YP_002435433.1 218886112 7172905 complement(1225022..1226287) 1 NC_011769.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dde:Dde_2664 diaminopimelate decarboxylase; diaminopimelate decarboxylase 1226287 7172905 DvMF_1010 Desulfovibrio vulgaris str. 'Miyazaki F' diaminopimelate decarboxylase YP_002435433.1 1225022 R 883 CDS YP_002435434.1 218886113 7172906 complement(1226349..1227122) 1 NC_011769.1 PFAM: transcriptional regulator TrmB; KEGG: dde:Dde_2665 hypothetical protein; TrmB family transcriptional regulator 1227122 7172906 DvMF_1011 Desulfovibrio vulgaris str. 'Miyazaki F' TrmB family transcriptional regulator YP_002435434.1 1226349 R 883 CDS YP_002435435.1 218886114 7172907 1227604..1228806 1 NC_011769.1 KEGG: dde:Dde_2667 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1228806 7172907 DvMF_1012 Desulfovibrio vulgaris str. 'Miyazaki F' amidohydrolase YP_002435435.1 1227604 D 883 CDS YP_002435436.1 218886115 7172908 1229017..1229439 1 NC_011769.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2668 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1229439 7172908 DvMF_1013 Desulfovibrio vulgaris str. 'Miyazaki F' FKBP-type peptidylprolyl isomerase YP_002435436.1 1229017 D 883 CDS YP_002435437.1 218886116 7172909 complement(1229596..1231254) 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0886 diguanylate cyclase; diguanylate cyclase 1231254 7172909 DvMF_1014 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002435437.1 1229596 R 883 CDS YP_002435438.1 218886117 7172910 complement(1231611..1233890) 1 NC_011769.1 TIGRFAM: ferrous iron transporter B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transporter B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: dde:Dde_2669 ferrous iron transporter B; ferrous iron transporter B 1233890 7172910 DvMF_1015 Desulfovibrio vulgaris str. 'Miyazaki F' ferrous iron transporter B YP_002435438.1 1231611 R 883 CDS YP_002435439.1 218886118 7172911 complement(1233893..1234150) 1 NC_011769.1 PFAM: FeoA family protein; KEGG: dde:Dde_2670 ferrous iron transporter A; FeoA family protein 1234150 7172911 DvMF_1016 Desulfovibrio vulgaris str. 'Miyazaki F' FeoA family protein YP_002435439.1 1233893 R 883 CDS YP_002435440.1 218886119 7172912 complement(1234272..1234478) 1 NC_011769.1 KEGG: dde:Dde_2672 hypothetical protein; hypothetical protein 1234478 7172912 DvMF_1017 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435440.1 1234272 R 883 CDS YP_002435441.1 218886120 7172913 complement(1234516..1234764) 1 NC_011769.1 PFAM: FeoA family protein; KEGG: dde:Dde_2673 ferrous ion transporter; FeoA family protein 1234764 7172913 DvMF_1018 Desulfovibrio vulgaris str. 'Miyazaki F' FeoA family protein YP_002435441.1 1234516 R 883 CDS YP_002435442.1 218886121 7172914 1235111..1236346 1 NC_011769.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dde:Dde_1186 M20/M25/M40 family peptidase; peptidase dimerisation domain-containing protein 1236346 7172914 DvMF_1019 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase dimerisation domain-containing protein YP_002435442.1 1235111 D 883 CDS YP_002435443.1 218886122 7172915 1236422..1237498 1 NC_011769.1 KEGG: mxa:MXAN_4665 oligopeptide/dipeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 1237498 7172915 DvMF_1020 Desulfovibrio vulgaris str. 'Miyazaki F' oligopeptide/dipeptide ABC transporter ATPase YP_002435443.1 1236422 D 883 CDS YP_002435444.1 218886123 7172916 1237817..1238467 1 NC_011769.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: dde:Dde_2674 two component LuxR family transcriptional regulator; LuxR family transcriptional regulator 1238467 7172916 DvMF_1021 Desulfovibrio vulgaris str. 'Miyazaki F' LuxR family transcriptional regulator YP_002435444.1 1237817 D 883 CDS YP_002435445.1 218886124 7172917 complement(1238619..1239476) 1 NC_011769.1 KEGG: ddgr:GH10507-PA; hypothetical protein 1239476 7172917 DvMF_1022 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435445.1 1238619 R 883 CDS YP_002435446.1 218886125 7172919 1240041..1242095 1 NC_011769.1 PFAM: regulatory protein LuxR; KEGG: dtni:19367; LuxR family transcriptional regulator 1242095 7172919 DvMF_1023 Desulfovibrio vulgaris str. 'Miyazaki F' LuxR family transcriptional regulator YP_002435446.1 1240041 D 883 CDS YP_002435447.1 218886126 7172920 1242732..1244696 1 NC_011769.1 KEGG: dol:Dole_1403 hypothetical protein; hypothetical protein 1244696 7172920 DvMF_1024 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435447.1 1242732 D 883 CDS YP_002435448.1 218886127 7172921 1244708..1245256 1 NC_011769.1 hypothetical protein 1245256 7172921 DvMF_1025 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435448.1 1244708 D 883 CDS YP_002435449.1 218886128 7172922 1245261..1245866 1 NC_011769.1 KEGG: dol:Dole_1405 hypothetical protein; hypothetical protein 1245866 7172922 DvMF_1026 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435449.1 1245261 D 883 CDS YP_002435450.1 218886129 7172923 1245893..1247551 1 NC_011769.1 PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dol:Dole_1406 type II and III secretion system protein; type II and III secretion system protein 1247551 7172923 DvMF_1027 Desulfovibrio vulgaris str. 'Miyazaki F' type II and III secretion system protein YP_002435450.1 1245893 D 883 CDS YP_002435451.1 218886130 7172924 1247610..1249316 1 NC_011769.1 PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: dol:Dole_1408 type II secretion system protein E; type II secretion system protein E 1249316 7172924 DvMF_1028 Desulfovibrio vulgaris str. 'Miyazaki F' type II secretion system protein E YP_002435451.1 1247610 D 883 CDS YP_002435452.1 218886131 7172925 1249389..1250606 1 NC_011769.1 PFAM: type II secretion system protein; KEGG: dol:Dole_1409 type II secretion system protein; type II secretion system protein 1250606 7172925 DvMF_1029 Desulfovibrio vulgaris str. 'Miyazaki F' type II secretion system protein YP_002435452.1 1249389 D 883 CDS YP_002435453.1 218886132 7172926 1250773..1251216 1 NC_011769.1 KEGG: sde:Sde_1141 MSHA pilin protein MshB; hypothetical protein 1251216 7172926 DvMF_1030 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435453.1 1250773 D 883 CDS YP_002435454.1 218886133 7172927 1251284..1252585 1 NC_011769.1 KEGG: csc:Csac_1061 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA; twitching motility protein 1252585 7172927 DvMF_1031 Desulfovibrio vulgaris str. 'Miyazaki F' twitching motility protein YP_002435454.1 1251284 D 883 CDS YP_002435455.1 218886134 7172928 1252905..1253342 1 NC_011769.1 KEGG: dol:Dole_1416 hypothetical protein; hypothetical protein 1253342 7172928 DvMF_1032 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435455.1 1252905 D 883 CDS YP_002435456.1 218886135 7172929 1253339..1253809 1 NC_011769.1 KEGG: pap:PSPA7_5191 type IV pilus modification protein PilV; hypothetical protein 1253809 7172929 DvMF_1033 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435456.1 1253339 D 883 CDS YP_002435457.1 218886136 7172930 1253821..1257135 1 NC_011769.1 KEGG: dol:Dole_1414 hypothetical protein; hypothetical protein 1257135 7172930 DvMF_1034 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435457.1 1253821 D 883 CDS YP_002435458.1 218886137 7172931 complement(1257393..1258034) 1 NC_011769.1 KEGG: cel:M18.1 M18.1; hypothetical protein 1258034 7172931 DvMF_1035 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435458.1 1257393 R 883 CDS YP_002435459.1 218886138 7172932 1258166..1258774 1 NC_011769.1 PFAM: lytic transglycosylase catalytic; KEGG: sfu:Sfum_0050 lytic transglycosylase, catalytic; lytic transglycosylase 1258774 7172932 DvMF_1036 Desulfovibrio vulgaris str. 'Miyazaki F' lytic transglycosylase YP_002435459.1 1258166 D 883 CDS YP_002435460.1 218886139 7172933 complement(1258958..1259761) 1 NC_011769.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: gsu:GSU2043 type 4 prepilin-like proteins leader peptide processing enzyme; peptidase A24A domain-containing protein 1259761 7172933 DvMF_1037 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase A24A domain-containing protein YP_002435460.1 1258958 R 883 CDS YP_002435461.1 218886140 7172934 1260087..1261205 1 NC_011769.1 KEGG: sat:SYN_00125 pili retraction protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA; twitching motility protein 1261205 7172934 DvMF_1038 Desulfovibrio vulgaris str. 'Miyazaki F' twitching motility protein YP_002435461.1 1260087 D 883 CDS YP_002435462.1 218886141 7172935 1261238..1263280 1 NC_011769.1 KEGG: dol:Dole_1407 type II secretory pathway ATPase ExeA; type II secretory pathway protein ExeA 1263280 7172935 DvMF_1039 Desulfovibrio vulgaris str. 'Miyazaki F' type II secretory pathway protein ExeA YP_002435462.1 1261238 D 883 CDS YP_002435463.1 218886142 7172936 1263736..1265313 1 NC_011769.1 PFAM: PhoH family protein; SMART: nucleotide binding protein PINc; KEGG: dde:Dde_1059 PhoH-related protein; PhoH family protein 1265313 7172936 DvMF_1040 Desulfovibrio vulgaris str. 'Miyazaki F' PhoH family protein YP_002435463.1 1263736 D 883 CDS YP_002435464.1 218886143 7172937 1265527..1266822 1 NC_011769.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: paa:Paes_0269 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase 1266822 7172937 DvMF_1041 Desulfovibrio vulgaris str. 'Miyazaki F' monofunctional biosynthetic peptidoglycan transglycosylase YP_002435464.1 1265527 D 883 CDS YP_002435465.1 218886144 7172938 complement(1266843..1267562) 1 NC_011769.1 KEGG: trq:TRQ2_0171 hypothetical protein; hypothetical protein 1267562 7172938 DvMF_1042 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435465.1 1266843 R 883 CDS YP_002435466.1 218886145 7172939 complement(1267853..1268716) 1 NC_011769.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: dde:Dde_0675 glycine/betaine/L-proline ABC transporter periplasmic-binding protein; glycine/betaine ABC transporter substrate-binding protein 1268716 7172939 DvMF_1043 Desulfovibrio vulgaris str. 'Miyazaki F' glycine/betaine ABC transporter substrate-binding protein YP_002435466.1 1267853 R 883 CDS YP_002435467.1 218886146 7172940 complement(1268788..1269630) 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter permease; glycine/betaine ABC transporter permease 1269630 7172940 DvMF_1044 Desulfovibrio vulgaris str. 'Miyazaki F' glycine/betaine ABC transporter permease YP_002435467.1 1268788 R 883 CDS YP_002435468.1 218886147 7172941 complement(1269672..1270865) 1 NC_011769.1 KEGG: dde:Dde_0673 glycine betaine/L-proline transport ATP binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter ATPase; PFAM: CBS domain containing protein; ABC transporter related; SMART: ATPase AAA; glycine betaine/L-proline ABC transporter ATPase 1270865 7172941 DvMF_1045 Desulfovibrio vulgaris str. 'Miyazaki F' glycine betaine/L-proline ABC transporter ATPase YP_002435468.1 1269672 R 883 CDS YP_002435469.1 218886148 7172942 1271731..1272522 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afu:AF2409 iron-sulfur cluster binding protein; 4Fe-4S ferredoxin 1272522 7172942 DvMF_1046 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002435469.1 1271731 D 883 CDS YP_002435470.1 218886149 7172943 1272594..1273151 1 NC_011769.1 SMART: rhodanese; KEGG: sfu:Sfum_0093 rhodanese domain protein; rhodanese 1273151 7172943 DvMF_1047 Desulfovibrio vulgaris str. 'Miyazaki F' rhodanese YP_002435470.1 1272594 D 883 CDS YP_002435471.1 218886150 7172944 1273441..1275138 1 NC_011769.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat; Sel1 domain-containing protein repeat-containing protein 1275138 7172944 DvMF_1048 Desulfovibrio vulgaris str. 'Miyazaki F' Sel1 domain-containing protein repeat-containing protein YP_002435471.1 1273441 D 883 CDS YP_002435472.1 218886151 7172945 1275173..1276438 1 NC_011769.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: scl:sce4660 permease of the major facilitator superfamily; major facilitator superfamily protein 1276438 7172945 DvMF_1049 Desulfovibrio vulgaris str. 'Miyazaki F' major facilitator superfamily protein YP_002435472.1 1275173 D 883 CDS YP_002435473.1 218886152 7172946 complement(1276762..1277601) 1 NC_011769.1 PFAM: inositol monophosphatase; KEGG: azo:azo2021 inositol-1-monophosphatase; inositol-phosphate phosphatase 1277601 7172946 DvMF_1050 Desulfovibrio vulgaris str. 'Miyazaki F' inositol-phosphate phosphatase YP_002435473.1 1276762 R 883 CDS YP_002435474.1 218886153 7172952 1283869..1284516 1 NC_011769.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1288 hypothetical protein; hypothetical protein 1284516 7172952 DvMF_1051 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435474.1 1283869 D 883 CDS YP_002435475.1 218886154 7172953 1284844..1289943 1 NC_011769.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: lip:LI0552 signal transduction histidine kinase; multi-sensor hybrid histidine kinase 1289943 7172953 DvMF_1052 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002435475.1 1284844 D 883 CDS YP_002435476.1 218886155 7172954 1290225..1290806 1 NC_011769.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_1283 TetR family transcriptional regulator; TetR family transcriptional regulator 1290806 7172954 DvMF_1053 Desulfovibrio vulgaris str. 'Miyazaki F' TetR family transcriptional regulator YP_002435476.1 1290225 D 883 CDS YP_002435477.1 218886156 7172955 1290974..1291501 1 NC_011769.1 PFAM: protein of unknown function DUF1499; KEGG: syn:sll1620 hypothetical protein; hypothetical protein 1291501 7172955 DvMF_1054 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435477.1 1290974 D 883 CDS YP_002435478.1 218886157 7172956 1292056..1292988 1 NC_011769.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: gka:GK1567 transporter; Mg2 transporter protein CorA family protein 1292988 7172956 DvMF_1055 Desulfovibrio vulgaris str. 'Miyazaki F' Mg2 transporter protein CorA family protein YP_002435478.1 1292056 D 883 CDS YP_002435479.1 218886158 7172958 1293797..1295701 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: glo:Glov_0461 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 1295701 7172958 DvMF_1057 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Cache sensor YP_002435479.1 1293797 D 883 CDS YP_002435480.1 218886159 7172959 complement(1296131..1297813) 1 NC_011769.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 1297813 7172959 DvMF_1058 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter ATP-binding protein YP_002435480.1 1296131 R 883 CDS YP_002435481.1 218886160 7172960 1298323..1299933 1 NC_011769.1 PFAM: hemerythrin HHE cation binding domain protein; PAS fold-4 domain protein; Domain of unknown function DUF1858; KEGG: afw:Anae109_1669 hemerythrin HHE cation binding domain protein; PAS/PAC sensor protein 1299933 7172960 DvMF_1059 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor protein YP_002435481.1 1298323 D 883 CDS YP_002435482.1 218886161 7172961 1300214..1302235 1 NC_011769.1 KEGG: dde:Dde_1322 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1302235 7172961 DvMF_1060 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_002435482.1 1300214 D 883 CDS YP_002435483.1 218886162 7172962 complement(1302496..1302813) 1 NC_011769.1 hypothetical protein 1302813 7172962 DvMF_1061 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435483.1 1302496 R 883 CDS YP_002435484.1 218886163 7172963 complement(1302815..1304407) 1 NC_011769.1 PFAM: Tail Collar domain protein; KEGG: dde:Dde_1065 hypothetical protein; Tail Collar domain-containing protein 1304407 7172963 DvMF_1062 Desulfovibrio vulgaris str. 'Miyazaki F' Tail Collar domain-containing protein YP_002435484.1 1302815 R 883 CDS YP_002435485.1 218886164 7172964 complement(1304498..1305007) 1 NC_011769.1 KEGG: mrd:Mrad2831_3442 secretion protein HlyD family protein; hypothetical protein 1305007 7172964 DvMF_1063 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435485.1 1304498 R 883 CDS YP_002435486.1 218886165 7172965 complement(1305009..1305587) 1 NC_011769.1 KEGG: ecv:APECO1_4050 hypothetical protein; hypothetical protein 1305587 7172965 DvMF_1064 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435486.1 1305009 R 883 CDS YP_002435487.1 218886166 7172966 complement(1305752..1307830) 1 NC_011769.1 KEGG: dde:Dde_2545 hypothetical protein; hypothetical protein 1307830 7172966 DvMF_1065 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435487.1 1305752 R 883 CDS YP_002435488.1 218886167 7172967 complement(1307834..1308430) 1 NC_011769.1 KEGG: dde:Dde_2546 hypothetical protein; hypothetical protein 1308430 7172967 DvMF_1066 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435488.1 1307834 R 883 CDS YP_002435489.1 218886168 7172968 complement(1308427..1309047) 1 NC_011769.1 KEGG: fre:Franean1_1779 2-oxoglutarate dehydrogenase E2 component; hypothetical protein 1309047 7172968 DvMF_1067 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435489.1 1308427 R 883 CDS YP_002435490.1 218886169 7172969 complement(1309125..1309523) 1 NC_011769.1 hypothetical protein 1309523 7172969 DvMF_1068 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435490.1 1309125 R 883 CDS YP_002435491.1 218886170 7172970 complement(1309598..1310512) 1 NC_011769.1 KEGG: dde:Dde_2547 hypothetical protein; hypothetical protein 1310512 7172970 DvMF_1069 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435491.1 1309598 R 883 CDS YP_002435492.1 218886171 7172971 complement(1310532..1311197) 1 NC_011769.1 KEGG: dde:Dde_2548 hypothetical protein; hypothetical protein 1311197 7172971 DvMF_1070 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435492.1 1310532 R 883 CDS YP_002435493.1 218886172 7172972 complement(1311282..1311773) 1 NC_011769.1 KEGG: dde:Dde_2549 hypothetical protein; hypothetical protein 1311773 7172972 DvMF_1071 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435493.1 1311282 R 883 CDS YP_002435494.1 218886173 7172973 complement(1311770..1313557) 1 NC_011769.1 KEGG: dde:Dde_2550 hypothetical protein; hypothetical protein 1313557 7172973 DvMF_1072 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435494.1 1311770 R 883 CDS YP_002435495.1 218886174 7172974 complement(1313568..1313795) 1 NC_011769.1 KEGG: dde:Dde_2551 hypothetical protein; hypothetical protein 1313795 7172974 DvMF_1073 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435495.1 1313568 R 883 CDS YP_002435496.1 218886175 7172975 1314497..1315180 1 NC_011769.1 KEGG: nfa:nfa43210 hypothetical protein; hypothetical protein 1315180 7172975 DvMF_1074 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435496.1 1314497 D 883 CDS YP_002435497.1 218886176 7172976 1315251..1315433 1 NC_011769.1 hypothetical protein 1315433 7172976 DvMF_1075 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435497.1 1315251 D 883 CDS YP_002435498.1 218886177 7172977 1315584..1317014 1 NC_011769.1 KEGG: dde:Dde_2566 dienelactone hydrolase-like; dienelactone hydrolase-like protein 1317014 7172977 DvMF_1076 Desulfovibrio vulgaris str. 'Miyazaki F' dienelactone hydrolase-like protein YP_002435498.1 1315584 D 883 CDS YP_002435499.1 218886178 7172978 1317524..1318327 1 NC_011769.1 hypothetical protein 1318327 7172978 DvMF_1077 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435499.1 1317524 D 883 CDS YP_002435500.1 218886179 7172979 1318795..1319331 1 NC_011769.1 KEGG: dde:Dde_2569 hypothetical protein; hypothetical protein 1319331 7172979 DvMF_1078 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435500.1 1318795 D 883 CDS YP_002435501.1 218886180 7172980 1319328..1319684 1 NC_011769.1 KEGG: pla:Plav_0904 hypothetical protein; hypothetical protein 1319684 7172980 DvMF_1079 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435501.1 1319328 D 883 CDS YP_002435502.1 218886181 7172981 1319828..1320598 1 NC_011769.1 KEGG: sit:TM1040_0800 terminase small subunit; hypothetical protein 1320598 7172981 DvMF_1080 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435502.1 1319828 D 883 CDS YP_002435503.1 218886182 7172982 1321096..1321299 1 NC_011769.1 KEGG: dde:Dde_2564 hypothetical protein; hypothetical protein 1321299 7172982 DvMF_1081 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435503.1 1321096 D 883 CDS YP_002435504.1 218886183 7172983 complement(1321442..1321846) 1 NC_011769.1 hypothetical protein 1321846 7172983 DvMF_1082 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435504.1 1321442 R 883 CDS YP_002435505.1 218886184 7172984 complement(1322238..1322894) 1 NC_011769.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_1168 TPR repeat-containing protein; hypothetical protein 1322894 7172984 DvMF_1083 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435505.1 1322238 R 883 CDS YP_002435506.1 218886185 7172985 complement(1323133..1323858) 1 NC_011769.1 PFAM: OmpA/MotB domain protein; KEGG: lip:LI0483 flagellar motor protein; OmpA/MotB domain-containing protein 1323858 7172985 DvMF_1084 Desulfovibrio vulgaris str. 'Miyazaki F' OmpA/MotB domain-containing protein YP_002435506.1 1323133 R 883 CDS YP_002435507.1 218886186 7172986 complement(1323926..1324771) 1 NC_011769.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1324771 7172986 DvMF_1085 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar motor protein MotA YP_002435507.1 1323926 R 883 CDS YP_002435508.1 218886187 7172987 complement(1324781..1325494) 1 NC_011769.1 hypothetical protein 1325494 7172987 DvMF_1086 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435508.1 1324781 R 883 CDS YP_002435509.1 218886188 7172988 1325892..1326509 1 NC_011769.1 KEGG: dde:Dde_2572 hypothetical protein; hypothetical protein 1326509 7172988 DvMF_1087 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435509.1 1325892 D 883 CDS YP_002435510.1 218886189 7172989 1326701..1329169 1 NC_011769.1 KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 1329169 7172989 DvMF_1088 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction histidine kinase, nitrogen specific, NtrB YP_002435510.1 1326701 D 883 CDS YP_002435511.1 218886190 7172990 1329166..1331772 1 NC_011769.1 KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 1331772 7172990 DvMF_1089 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor signal transduction histidine kinase YP_002435511.1 1329166 D 883 CDS YP_002435512.1 218886191 7172991 1332380..1333438 1 NC_011769.1 KEGG: sen:SACE_1344 PE-PGRS family protein; hypothetical protein 1333438 7172991 DvMF_1090 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435512.1 1332380 D 883 CDS YP_002435513.1 218886192 7172992 complement(1334256..1334786) 1 NC_011769.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dde:Dde_1155 hypothetical protein; ssDNA-binding protein 1334786 7172992 DvMF_1091 Desulfovibrio vulgaris str. 'Miyazaki F' ssDNA-binding protein YP_002435513.1 1334256 R 883 CDS YP_002435514.1 218886193 7172993 complement(1334955..1335386) 1 NC_011769.1 KEGG: dde:Dde_1156 hypothetical protein; hypothetical protein 1335386 7172993 DvMF_1092 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435514.1 1334955 R 883 CDS YP_002435515.1 218886194 7172994 complement(1335377..1335685) 1 NC_011769.1 KEGG: dde:Dde_1157 hypothetical protein; hypothetical protein 1335685 7172994 DvMF_1093 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435515.1 1335377 R 883 CDS YP_002435516.1 218886195 7172995 1335980..1336729 1 NC_011769.1 PFAM: peptidase S24 and S26 domain protein; KEGG: dde:Dde_1158 transcriptional regulator; phage repressor 1336729 7172995 DvMF_1094 Desulfovibrio vulgaris str. 'Miyazaki F' phage repressor YP_002435516.1 1335980 D 883 CDS YP_002435517.1 218886196 7172996 1337063..1337449 1 NC_011769.1 hypothetical protein 1337449 7172996 DvMF_1095 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435517.1 1337063 D 883 CDS YP_002435518.1 218886197 7172997 1337733..1342379 1 NC_011769.1 KEGG: mag:amb1841 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1342379 7172997 DvMF_1096 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002435518.1 1337733 D 883 CDS YP_002435519.1 218886198 7172998 1342486..1343661 1 NC_011769.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mag:amb4144 response regulator; response regulator receiver modulated metal dependent phosphohydrolase 1343661 7172998 DvMF_1097 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver modulated metal dependent phosphohydrolase YP_002435519.1 1342486 D 883 CDS YP_002435520.1 218886199 7172999 1344215..1345441 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0592 glycosyltransferase-like protein; group 1 glycosyl transferase 1345441 7172999 DvMF_1098 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002435520.1 1344215 D 883 CDS YP_002435521.1 218886200 7173000 complement(1345563..1347122) 1 NC_011769.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gur:Gura_2706 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter 1347122 7173000 DvMF_1099 Desulfovibrio vulgaris str. 'Miyazaki F' EmrB/QacA subfamily drug resistance transporter YP_002435521.1 1345563 R 883 CDS YP_002435522.1 218886201 7173001 complement(1347141..1348472) 1 NC_011769.1 PFAM: secretion protein HlyD; KEGG: gbe:GbCGDNIH1_1724 multidrug resistance protein A; secretion protein HlyD 1348472 7173001 DvMF_1100 Desulfovibrio vulgaris str. 'Miyazaki F' secretion protein HlyD YP_002435522.1 1347141 R 883 CDS YP_002435523.1 218886202 7173002 complement(1349042..1349929) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0241 extracellular solute-binding protein; family 3 extracellular solute-binding protein 1349929 7173002 DvMF_1101 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002435523.1 1349042 R 883 CDS YP_002435524.1 218886203 7173003 complement(1350278..1352341) 1 NC_011769.1 KEGG: gme:Gmet_0701 cache sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; Cache type 2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor protein 1352341 7173003 DvMF_1102 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor protein YP_002435524.1 1350278 R 883 CDS YP_002435525.1 218886204 7173004 complement(1352724..1353293) 1 NC_011769.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: sat:SYN_01301 fog:tpr repeat protein; hypothetical protein 1353293 7173004 DvMF_1103 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435525.1 1352724 R 883 CDS YP_002435526.1 218886205 7173005 complement(1353317..1353988) 1 NC_011769.1 KEGG: maq:Maqu_2157 hypothetical protein; hypothetical protein 1353988 7173005 DvMF_1104 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435526.1 1353317 R 883 CDS YP_002435527.1 218886206 7173006 complement(1354063..1354461) 1 NC_011769.1 KEGG: sul:SYO3AOP1_0959 hypothetical protein; hypothetical protein 1354461 7173006 DvMF_1105 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435527.1 1354063 R 883 CDS YP_002435528.1 218886207 7173007 1355112..1356917 1 NC_011769.1 KEGG: dde:Dde_2556 phage uncharacterized protein-like; phage protein 1356917 7173007 DvMF_1106 Desulfovibrio vulgaris str. 'Miyazaki F' phage protein YP_002435528.1 1355112 D 883 CDS YP_002435529.1 218886208 7173008 1357048..1357680 1 NC_011769.1 KEGG: dde:Dde_2557 hypothetical protein; hypothetical protein 1357680 7173008 DvMF_1107 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435529.1 1357048 D 883 CDS YP_002435530.1 218886209 7173009 complement(1357884..1358660) 1 NC_011769.1 KEGG: lip:LI0197 similar to endo-1,4-beta-xylanase; endo-1,4-beta-xylanase-like protein 1358660 7173009 DvMF_1108 Desulfovibrio vulgaris str. 'Miyazaki F' endo-1,4-beta-xylanase-like protein YP_002435530.1 1357884 R 883 CDS YP_002435531.1 218886210 7173010 complement(1358820..1360046) 1 NC_011769.1 PFAM: sodium/calcium exchanger membrane region; KEGG: cak:Caul_2287 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region 1360046 7173010 DvMF_1109 Desulfovibrio vulgaris str. 'Miyazaki F' sodium/calcium exchanger membrane region YP_002435531.1 1358820 R 883 CDS YP_002435532.1 218886211 7173011 1360407..1360715 1 NC_011769.1 KEGG: dde:Dde_1149 hypothetical protein; hypothetical protein 1360715 7173011 DvMF_1110 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435532.1 1360407 D 883 CDS YP_002435533.1 218886212 7173012 1360921..1361130 1 NC_011769.1 KEGG: ote:Oter_4455 DsrE family protein; DsrE family protein 1361130 7173012 DvMF_1111 Desulfovibrio vulgaris str. 'Miyazaki F' DsrE family protein YP_002435533.1 1360921 D 883 CDS YP_002435534.1 218886213 7173013 1361478..1362383 1 NC_011769.1 hypothetical protein 1362383 7173013 DvMF_1112 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435534.1 1361478 D 883 CDS YP_002435535.1 218886214 7173014 1362461..1363273 1 NC_011769.1 KEGG: lip:LI0739 NA; hypothetical protein 1363273 7173014 DvMF_1113 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435535.1 1362461 D 883 CDS YP_002435536.1 218886215 7173015 complement(1363419..1365521) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; nitrate and nitrite sensing domain protein; KEGG: lip:LIC103 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1365521 7173015 DvMF_1114 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002435536.1 1363419 R 883 CDS YP_002435537.1 218886216 7173016 complement(1365997..1366413) 1 NC_011769.1 PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2647 phenylacetic acid degradation-related protein; thioesterase superfamily protein 1366413 7173016 DvMF_1115 Desulfovibrio vulgaris str. 'Miyazaki F' thioesterase superfamily protein YP_002435537.1 1365997 R 883 CDS YP_002435538.1 218886217 7173017 1366582..1367028 1 NC_011769.1 PFAM: threonyl/alanyl tRNA synthetase SAD; KEGG: bth:BT_0566 alanyl-tRNA synthetase; threonyl/alanyl tRNA synthetase SAD 1367028 7173017 DvMF_1116 Desulfovibrio vulgaris str. 'Miyazaki F' threonyl/alanyl tRNA synthetase SAD YP_002435538.1 1366582 D 883 CDS YP_002435539.1 218886218 7173018 1367399..1369405 1 NC_011769.1 molecular chaperone; heat shock protein 90 1369405 7173018 DvMF_1117 Desulfovibrio vulgaris str. 'Miyazaki F' heat shock protein 90 YP_002435539.1 1367399 D 883 CDS YP_002435540.1 218886219 7173019 1369918..1372659 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_1650 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1372659 7173019 DvMF_1118 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002435540.1 1369918 D 883 CDS YP_002435541.1 218886220 7173020 complement(1373036..1375261) 1 NC_011769.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: dol:Dole_0855 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1375261 7173020 DvMF_1119 Desulfovibrio vulgaris str. 'Miyazaki F' sodium/hydrogen exchanger YP_002435541.1 1373036 R 883 CDS YP_002435542.1 218886221 7173021 complement(1375744..1376295) 1 NC_011769.1 hypothetical protein 1376295 7173021 DvMF_1120 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435542.1 1375744 R 883 CDS YP_002435543.1 218886222 7173022 complement(1377168..1377749) 1 NC_011769.1 hypothetical protein 1377749 7173022 DvMF_1121 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435543.1 1377168 R 883 CDS YP_002435544.1 218886223 7173023 1378795..1380240 1 NC_011769.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sfu:Sfum_4061 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; serine-type D-Ala-D-Ala carboxypeptidase 1380240 7173023 DvMF_1122 Desulfovibrio vulgaris str. 'Miyazaki F' serine-type D-Ala-D-Ala carboxypeptidase YP_002435544.1 1378795 D 883 CDS YP_002435545.1 218886224 7173024 complement(1380349..1380717) 1 NC_011769.1 TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mxa:MXAN_6868 6-pyruvoyl tetrahydrobiopterin synthase; queuosine biosynthesis protein QueD 1380717 7173024 DvMF_1123 Desulfovibrio vulgaris str. 'Miyazaki F' queuosine biosynthesis protein QueD YP_002435545.1 1380349 R 883 CDS YP_002435546.1 218886225 7173025 complement(1380868..1381542) 1 NC_011769.1 KEGG: met:M446_6594 radical SAM protein; radical SAM protein 1381542 7173025 DvMF_1124 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002435546.1 1380868 R 883 CDS YP_002435547.1 218886226 7173026 complement(1381542..1382261) 1 NC_011769.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: bra:BRADO3849 ExsB; exsB protein 1382261 7173026 DvMF_1125 Desulfovibrio vulgaris str. 'Miyazaki F' exsB protein YP_002435547.1 1381542 R 883 CDS YP_002435548.1 218886227 7173027 1382807..1383985 1 NC_011769.1 PFAM: FAD dependent oxidoreductase; KEGG: tpe:Tpen_1127 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1383985 7173027 DvMF_1126 Desulfovibrio vulgaris str. 'Miyazaki F' FAD dependent oxidoreductase YP_002435548.1 1382807 D 883 CDS YP_002435549.1 218886228 7173028 1383990..1384883 1 NC_011769.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpe:Tpen_1126 succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 1384883 7173028 DvMF_1127 Desulfovibrio vulgaris str. 'Miyazaki F' succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_002435549.1 1383990 D 883 CDS YP_002435550.1 218886229 7173029 1385058..1385573 1 NC_011769.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: gbm:Gbem_1948 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 1385573 7173029 DvMF_1128 Desulfovibrio vulgaris str. 'Miyazaki F' YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_002435550.1 1385058 D 883 CDS YP_002435551.1 218886230 7173030 complement(1385629..1386324) 1 NC_011769.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: dde:Dde_0977 two component LuxR family transcriptional regulator; LuxR family transcriptional regulator 1386324 7173030 DvMF_1129 Desulfovibrio vulgaris str. 'Miyazaki F' LuxR family transcriptional regulator YP_002435551.1 1385629 R 883 CDS YP_002435552.1 218886231 7173031 1386837..1387103 1 NC_011769.1 KEGG: dde:Dde_0976 hypothetical protein; hypothetical protein 1387103 7173031 DvMF_1130 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435552.1 1386837 D 883 CDS YP_002435553.1 218886232 7173032 1387508..1389010 1 NC_011769.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ote:Oter_3856 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 1389010 7173032 DvMF_1131 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver sensor signal transduction histidine kinase YP_002435553.1 1387508 D 883 CDS YP_002435554.1 218886233 7173033 1389000..1390391 1 NC_011769.1 PFAM: pseudouridine synthase; KEGG: dde:Dde_0975 pseudouridylate synthase 23S RNA-specific-like; pseudouridine synthase 1390391 7173033 DvMF_1132 Desulfovibrio vulgaris str. 'Miyazaki F' pseudouridine synthase YP_002435554.1 1389000 D 883 CDS YP_002435555.1 218886234 7173034 complement(1390498..1391184) 1 NC_011769.1 KEGG: dde:Dde_2062 hypothetical protein; hypothetical protein 1391184 7173034 DvMF_1133 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435555.1 1390498 R 883 CDS YP_002435556.1 218886235 7173035 complement(1391367..1393082) 1 NC_011769.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1393082 7173035 DvMF_1134 Desulfovibrio vulgaris str. 'Miyazaki F' single-stranded-DNA-specific exonuclease RecJ YP_002435556.1 1391367 R 883 CDS YP_002435557.1 218886236 7173036 complement(1393458..1394480) 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2716 signal transduction protein; metal dependent phosphohydrolase 1394480 7173036 DvMF_1135 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002435557.1 1393458 R 883 CDS YP_002435558.1 218886237 7173037 complement(1394477..1395385) 1 NC_011769.1 SMART: hypothetical protein; KEGG: dde:Dde_2717 hypothetical protein; hypothetical protein 1395385 7173037 DvMF_1136 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435558.1 1394477 R 883 CDS YP_002435559.1 218886238 7173038 complement(1395612..1396364) 1 NC_011769.1 KEGG: dde:Dde_2718 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 1396364 7173038 DvMF_1137 Desulfovibrio vulgaris str. 'Miyazaki F' orotidine 5'-phosphate decarboxylase YP_002435559.1 1395612 R 883 CDS YP_002435560.1 218886239 7173039 complement(1396370..1396999) 1 NC_011769.1 KEGG: dde:Dde_2719 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase 1396999 7173039 DvMF_1138 Desulfovibrio vulgaris str. 'Miyazaki F' guanylate kinase YP_002435560.1 1396370 R 883 CDS YP_002435561.1 218886240 7173040 complement(1396999..1397265) 1 NC_011769.1 PFAM: protein of unknown function DUF370; KEGG: dde:Dde_2720 hypothetical protein; hypothetical protein 1397265 7173040 DvMF_1139 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435561.1 1396999 R 883 CDS YP_002435562.1 218886241 7173041 complement(1397430..1398311) 1 NC_011769.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: dde:Dde_2721 hypothetical protein; hypothetical protein 1398311 7173041 DvMF_1140 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435562.1 1397430 R 883 CDS YP_002435563.1 218886242 7173042 complement(1398572..1401739) 1 NC_011769.1 KEGG: mag:amb1956 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 1401739 7173042 DvMF_1141 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor hybrid histidine kinase YP_002435563.1 1398572 R 883 CDS YP_002435564.1 218886243 7173043 complement(1401995..1402645) 1 NC_011769.1 PFAM: SNARE associated Golgi protein; KEGG: lip:LI0705 DedA protein family; hypothetical protein 1402645 7173043 DvMF_1142 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435564.1 1401995 R 883 CDS YP_002435565.1 218886244 7173044 1403253..1403699 1 NC_011769.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3667 flavodoxin, short chain; flavodoxin 1403699 7173044 DvMF_1143 Desulfovibrio vulgaris str. 'Miyazaki F' flavodoxin YP_002435565.1 1403253 D 883 CDS YP_002435566.1 218886245 7173045 1403824..1404039 1 NC_011769.1 hypothetical protein 1404039 7173045 DvMF_1144 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435566.1 1403824 D 883 CDS YP_002435567.1 218886246 7173046 1404036..1404221 1 NC_011769.1 hypothetical protein 1404221 7173046 DvMF_1145 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435567.1 1404036 D 883 CDS YP_002435568.1 218886247 7173047 1404754..1405446 1 NC_011769.1 KEGG: mmu:13800 enabled homolog (Drosophila); hypothetical protein 1405446 7173047 DvMF_1146 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435568.1 1404754 D 883 CDS YP_002435569.1 218886248 7173048 1406413..1407966 1 NC_011769.1 KEGG: hmo:HM1_3016 L-lactate permease family protein; L-lactate permease 1407966 7173048 DvMF_1147 Desulfovibrio vulgaris str. 'Miyazaki F' L-lactate permease YP_002435569.1 1406413 D 883 CDS YP_002435570.1 218886249 7173049 1408259..1410103 1 NC_011769.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; ion transport 2 domain protein; KEGG: dol:Dole_0161 TrkA domain-containing protein; TrkA-N domain-containing protein 1410103 7173049 DvMF_1148 Desulfovibrio vulgaris str. 'Miyazaki F' TrkA-N domain-containing protein YP_002435570.1 1408259 D 883 CDS YP_002435571.1 218886250 7173050 complement(1410162..1411055) 1 NC_011769.1 PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_2931 protein of unknown function DUF81; hypothetical protein 1411055 7173050 DvMF_1149 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435571.1 1410162 R 883 CDS YP_002435572.1 218886251 7173051 complement(1411052..1411489) 1 NC_011769.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: mba:Mbar_A2644 hypothetical protein; alkylhydroperoxidase 1411489 7173051 DvMF_1150 Desulfovibrio vulgaris str. 'Miyazaki F' alkylhydroperoxidase YP_002435572.1 1411052 R 883 CDS YP_002435573.1 218886252 7173052 1411686..1412609 1 NC_011769.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfu:Sfum_1907 LysR family transcriptional regulator; LysR family transcriptional regulator 1412609 7173052 DvMF_1151 Desulfovibrio vulgaris str. 'Miyazaki F' LysR family transcriptional regulator YP_002435573.1 1411686 D 883 CDS YP_002435574.1 218886253 7173054 1413260..1414408 1 NC_011769.1 PFAM: Domain of unkown function DUF1786 pyruvate format-lyase activating enzyme; KEGG: dde:Dde_0971 hypothetical protein; hypothetical protein 1414408 7173054 DvMF_1152 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435574.1 1413260 D 883 CDS YP_002435575.1 218886254 7173055 1414629..1415933 1 NC_011769.1 KEGG: dde:Dde_0972 phenylacetate-CoA ligase; phenylacetate--CoA ligase 1415933 7173055 DvMF_1153 Desulfovibrio vulgaris str. 'Miyazaki F' phenylacetate--CoA ligase YP_002435575.1 1414629 D 883 CDS YP_002435576.1 218886255 7173056 1416102..1416611 1 NC_011769.1 PFAM: protein of unknown function DUF456; KEGG: dde:Dde_0973 hypothetical protein; hypothetical protein 1416611 7173056 DvMF_1154 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435576.1 1416102 D 883 CDS YP_002435577.1 218886256 7173057 1416747..1417547 1 NC_011769.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_0974 RNA methyltransferase; RNA methyltransferase, TrmH family, group 1 1417547 7173057 DvMF_1155 Desulfovibrio vulgaris str. 'Miyazaki F' RNA methyltransferase, TrmH family, group 1 YP_002435577.1 1416747 D 883 CDS YP_002435578.1 218886257 7173058 1417854..1420274 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1420274 7173058 DvMF_1156 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_002435578.1 1417854 D 883 CDS YP_002435579.1 218886258 7173059 complement(1420444..1422615) 1 NC_011769.1 KEGG: dde:Dde_1421 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein 1422615 7173059 DvMF_1157 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor protein YP_002435579.1 1420444 R 883 CDS YP_002435580.1 218886259 7173060 complement(1422747..1424039) 1 NC_011769.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein; transglutaminase 1424039 7173060 DvMF_1158 Desulfovibrio vulgaris str. 'Miyazaki F' transglutaminase YP_002435580.1 1422747 R 883 CDS YP_002435581.1 218886260 7173061 complement(1424039..1425439) 1 NC_011769.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 1425439 7173061 DvMF_1159 Desulfovibrio vulgaris str. 'Miyazaki F' HlyD family type I secretion membrane fusion protein YP_002435581.1 1424039 R 883 CDS YP_002435582.1 218886261 7173062 complement(1425605..1427809) 1 NC_011769.1 KEGG: dde:Dde_1418 ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; SMART: ATPase AAA; cyclic nucleotide-binding protein 1427809 7173062 DvMF_1160 Desulfovibrio vulgaris str. 'Miyazaki F' cyclic nucleotide-binding protein YP_002435582.1 1425605 R 883 CDS YP_002435583.1 218886262 7173063 1429589..1437202 1 NC_011769.1 PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 hemagglutinin/hemolysin-related protein; hemolysin-type calcium-binding protein 1437202 7173063 DvMF_1161 Desulfovibrio vulgaris str. 'Miyazaki F' hemolysin-type calcium-binding protein YP_002435583.1 1429589 D 883 CDS YP_002435584.1 218886263 7173064 complement(1437322..1438047) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_3101 ABC transporter; ABC transporter 1438047 7173064 DvMF_1162 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435584.1 1437322 R 883 CDS YP_002435585.1 218886264 7173065 complement(1438047..1438814) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_3102 ABC transporter; ABC transporter 1438814 7173065 DvMF_1163 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435585.1 1438047 R 883 CDS YP_002435586.1 218886265 7173066 complement(1438827..1439903) 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: sfu:Sfum_3103 inner-membrane translocator; inner-membrane translocator 1439903 7173066 DvMF_1164 Desulfovibrio vulgaris str. 'Miyazaki F' inner-membrane translocator YP_002435586.1 1438827 R 883 CDS YP_002435587.1 218886266 7173067 complement(1439934..1440854) 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: sfu:Sfum_3104 inner-membrane translocator; inner-membrane translocator 1440854 7173067 DvMF_1165 Desulfovibrio vulgaris str. 'Miyazaki F' inner-membrane translocator YP_002435587.1 1439934 R 883 CDS YP_002435588.1 218886267 7173068 complement(1441140..1442303) 1 NC_011769.1 PFAM: extracellular ligand-binding receptor; KEGG: sfu:Sfum_3105 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1442303 7173068 DvMF_1166 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular ligand-binding receptor YP_002435588.1 1441140 R 883 CDS YP_002435589.1 218886268 7173070 1442677..1443600 1 NC_011769.1 KEGG: bha:BH2071 hypothetical protein; diaminopimelate epimerase-like protein 1443600 7173070 DvMF_1168 Desulfovibrio vulgaris str. 'Miyazaki F' diaminopimelate epimerase-like protein YP_002435589.1 1442677 D 883 CDS YP_002435590.1 218886269 7173071 1443829..1446888 1 NC_011769.1 KEGG: sfu:Sfum_3176 hypothetical protein; hypothetical protein 1446888 7173071 DvMF_1169 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435590.1 1443829 D 883 CDS YP_002435591.1 218886270 7173072 1447299..1448294 1 NC_011769.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mag:amb4555 NADPH:quinone reductase and related Zn-dependent oxidoreductase; alcohol dehydrogenase zinc-binding domain protein 1448294 7173072 DvMF_1170 Desulfovibrio vulgaris str. 'Miyazaki F' alcohol dehydrogenase zinc-binding domain protein YP_002435591.1 1447299 D 883 CDS YP_002435592.1 218886271 7173073 complement(1448325..1449098) 1 NC_011769.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: amt:Amet_3720 C_GCAxxG_C_C family protein; C_GCAxxG_C_C family protein 1449098 7173073 DvMF_1171 Desulfovibrio vulgaris str. 'Miyazaki F' C_GCAxxG_C_C family protein YP_002435592.1 1448325 R 883 CDS YP_002435593.1 218886272 7173074 complement(1449223..1449744) 1 NC_011769.1 PFAM: rhodanese; KEGG: dde:Dde_0806 rhodanese-like protein; rhodanese 1449744 7173074 DvMF_1172 Desulfovibrio vulgaris str. 'Miyazaki F' rhodanese YP_002435593.1 1449223 R 883 CDS YP_002435594.1 218886273 7173075 complement(1449893..1450369) 1 NC_011769.1 KEGG: dde:Dde_0805 hypothetical protein; hypothetical protein 1450369 7173075 DvMF_1173 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435594.1 1449893 R 883 CDS YP_002435595.1 218886274 7173076 1450710..1452059 1 NC_011769.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: dde:Dde_0804 cobalamin biosynthesis protein CbiD; cobalamin (vitamin B12) biosynthesis CbiD protein 1452059 7173076 DvMF_1174 Desulfovibrio vulgaris str. 'Miyazaki F' cobalamin (vitamin B12) biosynthesis CbiD protein YP_002435595.1 1450710 D 883 CDS YP_002435596.1 218886275 7173077 1452056..1453480 1 NC_011769.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; protein of unknown function methylase KEGG: dde:Dde_0803 precorrin-6Y C5,15-methyltransferase (decarboxylating); precorrin-6y C5,15-methyltransferase subunit CbiE 1453480 7173077 DvMF_1175 Desulfovibrio vulgaris str. 'Miyazaki F' precorrin-6y C5,15-methyltransferase subunit CbiE YP_002435596.1 1452056 D 883 CDS YP_002435597.1 218886276 7173078 1453477..1454415 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein; family 3 extracellular solute-binding protein 1454415 7173078 DvMF_1176 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002435597.1 1453477 D 883 CDS YP_002435598.1 218886277 7173079 1454396..1455313 1 NC_011769.1 KEGG: dde:Dde_0801 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase 1455313 7173079 DvMF_1177 Desulfovibrio vulgaris str. 'Miyazaki F' precorrin-4 C(11)-methyltransferase YP_002435598.1 1454396 D 883 CDS YP_002435599.1 218886278 7173080 1455576..1457303 1 NC_011769.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pna:Pnap_4517 bilirubin oxidase; multicopper oxidase type 3 1457303 7173080 DvMF_1178 Desulfovibrio vulgaris str. 'Miyazaki F' multicopper oxidase type 3 YP_002435599.1 1455576 D 883 CDS YP_002435600.1 218886279 7173081 1457287..1458444 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein; family 3 extracellular solute-binding protein 1458444 7173081 DvMF_1179 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002435600.1 1457287 D 883 CDS YP_002435601.1 218886280 7173082 complement(1458669..1459139) 1 NC_011769.1 KEGG: sfu:Sfum_0282 hypothetical protein; hypothetical protein 1459139 7173082 DvMF_1180 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435601.1 1458669 R 883 CDS YP_002435602.1 218886281 7173083 1459485..1460852 1 NC_011769.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 1460852 glmU 7173083 glmU Desulfovibrio vulgaris str. 'Miyazaki F' bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_002435602.1 1459485 D 883 CDS YP_002435603.1 218886282 7173084 1460884..1461120 1 NC_011769.1 KEGG: dde:Dde_0980 hypothetical protein; hypothetical protein 1461120 7173084 DvMF_1182 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435603.1 1460884 D 883 CDS YP_002435604.1 218886283 7173085 1461136..1461399 1 NC_011769.1 KEGG: dde:Dde_0979 hypothetical protein; hypothetical protein 1461399 7173085 DvMF_1183 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435604.1 1461136 D 883 CDS YP_002435605.1 218886284 7173087 1461889..1463448 1 NC_011769.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1463448 7173087 DvMF_1184 Desulfovibrio vulgaris str. 'Miyazaki F' phosphodiesterase YP_002435605.1 1461889 D 883 CDS YP_002435606.1 218886285 7173088 complement(1463957..1464730) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein; family 3 extracellular solute-binding protein 1464730 7173088 DvMF_1185 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002435606.1 1463957 R 883 CDS YP_002435607.1 218886286 7173090 complement(1464927..1465820) 1 NC_011769.1 PFAM: protein of unknown function DUF191; KEGG: dde:Dde_0799 hypothetical protein; hypothetical protein 1465820 7173090 DvMF_1187 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435607.1 1464927 R 883 CDS YP_002435608.1 218886287 7173091 1466201..1467364 1 NC_011769.1 PFAM: radical SAM protein; KEGG: dde:Dde_0798 hypothetical protein; radical SAM protein 1467364 7173091 DvMF_1188 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002435608.1 1466201 D 883 CDS YP_002435609.1 218886288 7173092 1467361..1468521 1 NC_011769.1 PFAM: radical SAM protein; KEGG: dde:Dde_0797 hypothetical protein; radical SAM protein 1468521 7173092 DvMF_1189 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002435609.1 1467361 D 883 CDS YP_002435610.1 218886289 7173093 1468824..1469678 1 NC_011769.1 PFAM: protein of unknown function DUF178; KEGG: dde:Dde_0796 hypothetical protein; hypothetical protein 1469678 7173093 DvMF_1190 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435610.1 1468824 D 883 CDS YP_002435611.1 218886290 7173094 1469733..1470872 1 NC_011769.1 KEGG: lch:Lcho_1827 hypothetical protein; hypothetical protein 1470872 7173094 DvMF_1191 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435611.1 1469733 D 883 CDS YP_002435612.1 218886291 7173095 complement(1471077..1471262) 1 NC_011769.1 hypothetical protein 1471262 7173095 DvMF_1192 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435612.1 1471077 R 883 CDS YP_002435613.1 218886292 7173096 complement(1471305..1472309) 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0791 hypothetical protein; hypothetical protein 1472309 7173096 DvMF_1193 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435613.1 1471305 R 883 CDS YP_002435614.1 218886293 7173097 complement(1472582..1473187) 1 NC_011769.1 PFAM: GrpE protein; KEGG: dde:Dde_1025 heat shock protein GrpE; GrpE protein HSP-70 cofactor 1473187 7173097 DvMF_1194 Desulfovibrio vulgaris str. 'Miyazaki F' GrpE protein HSP-70 cofactor YP_002435614.1 1472582 R 883 CDS YP_002435615.1 218886294 7173098 complement(1473288..1474355) 1 NC_011769.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: negative regulator of class I heat shock protein; KEGG: dde:Dde_1026 heat-inducible transcription repressor HrcA; heat-inducible transcription repressor HrcA 1474355 7173098 DvMF_1195 Desulfovibrio vulgaris str. 'Miyazaki F' heat-inducible transcription repressor HrcA YP_002435615.1 1473288 R 883 CDS YP_002435616.1 218886295 7173099 1475308..1475625 1 NC_011769.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: dde:Dde_0762 dissimilatory sulfite reductase, subunit gamma; TusE/DsrC/DsvC family sulfur relay protein 1475625 7173099 DvMF_1196 Desulfovibrio vulgaris str. 'Miyazaki F' TusE/DsrC/DsvC family sulfur relay protein YP_002435616.1 1475308 D 883 CDS YP_002435617.1 218886296 7173100 complement(1475935..1476207) 1 NC_011769.1 KEGG: dde:Dde_0761 hypothetical protein; hypothetical protein 1476207 7173100 DvMF_1197 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435617.1 1475935 R 883 CDS YP_002435618.1 218886297 7173102 complement(1477007..1478299) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0759 hypothetical protein; ABC transporter substrate-binding protein 1478299 7173102 DvMF_1199 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter substrate-binding protein YP_002435618.1 1477007 R 883 CDS YP_002435619.1 218886298 7173103 complement(1478460..1479596) 1 NC_011769.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_0754 TRAP-type C4-dicarboxylate transporter periplasmic component-like; TRAP dicarboxylate transporter- DctP subunit 1479596 7173103 DvMF_1200 Desulfovibrio vulgaris str. 'Miyazaki F' TRAP dicarboxylate transporter- DctP subunit YP_002435619.1 1478460 R 883 CDS YP_002435620.1 218886299 7173104 complement(1479748..1480611) 1 NC_011769.1 PFAM: protein of unknown function DUF161; KEGG: dol:Dole_2543 hypothetical protein; hypothetical protein 1480611 7173104 DvMF_1201 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435620.1 1479748 R 883 CDS YP_002435621.1 218886300 7173105 complement(1481117..1481743) 1 NC_011769.1 hypothetical protein 1481743 7173105 DvMF_1202 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435621.1 1481117 R 883 CDS YP_002435622.1 218886301 7173106 complement(1481969..1482766) 1 NC_011769.1 PFAM: protein of unknown function DUF81; KEGG: gme:Gmet_1097 protein of unknown function DUF81; hypothetical protein 1482766 7173106 DvMF_1203 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435622.1 1481969 R 883 CDS YP_002435623.1 218886302 7173107 complement(1482977..1483996) 1 NC_011769.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: dde:Dde_0750 FMN-dependent family dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 1483996 7173107 DvMF_1204 Desulfovibrio vulgaris str. 'Miyazaki F' FMN-dependent alpha-hydroxy acid dehydrogenase YP_002435623.1 1482977 R 883 CDS YP_002435624.1 218886303 7173108 complement(1484175..1484891) 1 NC_011769.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dde:Dde_0749 GntR family transcriptional regulator; GntR family transcriptional regulator 1484891 7173108 DvMF_1205 Desulfovibrio vulgaris str. 'Miyazaki F' GntR family transcriptional regulator YP_002435624.1 1484175 R 883 CDS YP_002435625.1 218886304 7173109 complement(1485341..1485937) 1 NC_011769.1 KEGG: ana:alr2112 unknown protein; hypothetical protein 1485937 7173109 DvMF_1206 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435625.1 1485341 R 883 CDS YP_002435626.1 218886305 7173110 complement(1485961..1486482) 1 NC_011769.1 PFAM: regulatory protein ArsR; KEGG: dde:Dde_0747 ArsR family transcriptional regulator; ArsR family transcriptional regulator 1486482 7173110 DvMF_1207 Desulfovibrio vulgaris str. 'Miyazaki F' ArsR family transcriptional regulator YP_002435626.1 1485961 R 883 CDS YP_002435627.1 218886306 7173111 complement(1486679..1487218) 1 NC_011769.1 PFAM: CheW domain protein; KEGG: glo:Glov_1734 CheW protein; chemotaxis protein CheW 1487218 7173111 DvMF_1208 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheW YP_002435627.1 1486679 R 883 CDS YP_002435628.1 218886307 7173112 complement(1487506..1489485) 1 NC_011769.1 PFAM: chemotaxis sensory transducer; KEGG: mgm:Mmc1_3308 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1489485 7173112 DvMF_1209 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002435628.1 1487506 R 883 CDS YP_002435629.1 218886308 7173113 complement(1489778..1490086) 1 NC_011769.1 KEGG: dde:Dde_0743 hypothetical protein; hypothetical protein 1490086 7173113 DvMF_1210 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435629.1 1489778 R 883 CDS YP_002435630.1 218886309 7173114 complement(1490370..1490801) 1 NC_011769.1 KEGG: dde:Dde_0323 response regulator receiver domain-containing protein; response regulator receiver protein 1490801 7173114 DvMF_1211 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002435630.1 1490370 R 883 CDS YP_002435631.1 218886310 7173115 complement(1491425..1491820) 1 NC_011769.1 KEGG: dde:Dde_0319 hypothetical protein; hypothetical protein 1491820 7173115 DvMF_1212 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435631.1 1491425 R 883 CDS YP_002435632.1 218886311 7173116 complement(1491817..1493421) 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; hypothetical protein; SMART: AAA ATPase; KEGG: dde:Dde_0318 Fis family transcriptional regulator; Fis family transcriptional regulator 1493421 7173116 DvMF_1213 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435632.1 1491817 R 883 CDS YP_002435633.1 218886312 7173117 1493709..1495361 1 NC_011769.1 PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_0218 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1495361 7173117 DvMF_1214 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002435633.1 1493709 D 883 CDS YP_002435634.1 218886313 7173118 complement(1496241..1496951) 1 NC_011769.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; Fe-S cluster domain protein; KEGG: dde:Dde_0719 molybdopterin-guanine dinucleotide biosynthesis protein-like; molybdopterin-guanine dinucleotide biosynthesis protein MobB 1496951 7173118 DvMF_1215 Desulfovibrio vulgaris str. 'Miyazaki F' molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_002435634.1 1496241 R 883 CDS YP_002435635.1 218886314 7173119 complement(1497326..1498033) 1 NC_011769.1 KEGG: dde:Dde_0718 formate dehydrogenase subunit beta; formate dehydrogenase subunit beta 1498033 7173119 DvMF_1216 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase subunit beta YP_002435635.1 1497326 R 883 CDS YP_002435636.1 218886315 7173120 complement(1498036..1501062) 1 NC_011769.1 KEGG: dde:Dde_0813 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, subunit alpha; Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; formate dehydrogenase subunit alpha 1501062 7173120 DvMF_1217 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase subunit alpha YP_002435636.1 1498036 R 883 CDS YP_002435637.1 218886316 7173121 complement(1501137..1501373) 1 NC_011769.1 KEGG: dde:Dde_0715 hypothetical protein; hypothetical protein 1501373 7173121 DvMF_1218 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435637.1 1501137 R 883 CDS YP_002435638.1 218886317 7173122 complement(1501977..1502900) 1 NC_011769.1 KEGG: dde:Dde_0714 transposase; transposase 1502900 7173122 DvMF_1219 Desulfovibrio vulgaris str. 'Miyazaki F' transposase YP_002435638.1 1501977 R 883 CDS YP_002435639.1 218886318 7173123 complement(1503023..1503805) 1 NC_011769.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_0713 hypothetical protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 1503805 7173123 DvMF_1220 Desulfovibrio vulgaris str. 'Miyazaki F' alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_002435639.1 1503023 R 883 CDS YP_002435640.1 218886319 7173124 1504235..1505653 1 NC_011769.1 PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0712 lipoprotein; extracellular ligand-binding receptor 1505653 7173124 DvMF_1221 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular ligand-binding receptor YP_002435640.1 1504235 D 883 CDS YP_002435641.1 218886320 7173125 1505650..1507710 1 NC_011769.1 KEGG: dde:Dde_0711 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1507710 7173125 DvMF_1222 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002435641.1 1505650 D 883 CDS YP_002435642.1 218886321 7173126 1507691..1508506 1 NC_011769.1 PFAM: response regulator receiver; sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_0710 response regulator receiver domain-containing protein; anti-sigma-factor antagonist 1508506 7173126 DvMF_1223 Desulfovibrio vulgaris str. 'Miyazaki F' anti-sigma-factor antagonist YP_002435642.1 1507691 D 883 CDS YP_002435643.1 218886322 7173127 1508797..1509579 1 NC_011769.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: dde:Dde_0161 LytR/AlgR family transcriptional regulator; LytTR family transcriptional regulator 1509579 7173127 DvMF_1224 Desulfovibrio vulgaris str. 'Miyazaki F' LytTR family transcriptional regulator YP_002435643.1 1508797 D 883 CDS YP_002435644.1 218886323 7173128 1509712..1511523 1 NC_011769.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: dde:Dde_0160 ATP-binding region, ATPase-like; signal transduction histidine kinase LytS 1511523 7173128 DvMF_1225 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction histidine kinase LytS YP_002435644.1 1509712 D 883 CDS YP_002435645.1 218886324 7173129 1511761..1513164 1 NC_011769.1 PFAM: carbon starvation protein CstA; KEGG: afw:Anae109_4235 carbon starvation protein CstA; carbon starvation protein CstA 1513164 7173129 DvMF_1226 Desulfovibrio vulgaris str. 'Miyazaki F' carbon starvation protein CstA YP_002435645.1 1511761 D 883 CDS YP_002435646.1 218886325 7173130 1513747..1515558 1 NC_011769.1 PFAM: carbon starvation protein CstA; KEGG: gur:Gura_2790 carbon starvation protein CstA; carbon starvation protein CstA 1515558 7173130 DvMF_1227 Desulfovibrio vulgaris str. 'Miyazaki F' carbon starvation protein CstA YP_002435646.1 1513747 D 883 CDS YP_002435647.1 218886326 7173132 1516587..1518005 1 NC_011769.1 PFAM: carbon starvation protein CstA; KEGG: dde:Dde_0227 carbon starvation protein A; carbon starvation protein CstA 1518005 7173132 DvMF_1229 Desulfovibrio vulgaris str. 'Miyazaki F' carbon starvation protein CstA YP_002435647.1 1516587 D 883 CDS YP_002435648.1 218886327 7173133 complement(1518320..1519405) 1 NC_011769.1 KEGG: dde:Dde_0709 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: radical SAM domain protein; molybdenum cofactor synthesis protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1519405 7173133 DvMF_1230 Desulfovibrio vulgaris str. 'Miyazaki F' molybdenum cofactor biosynthesis protein A YP_002435648.1 1518320 R 883 CDS YP_002435649.1 218886328 7173134 complement(1519531..1520403) 1 NC_011769.1 KEGG: dde:Dde_0708 molybdopterin-guanine dinucleotide biosynthesis protein A; Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein 1520403 7173134 DvMF_1231 Desulfovibrio vulgaris str. 'Miyazaki F' Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein YP_002435649.1 1519531 R 883 CDS YP_002435650.1 218886329 7173135 complement(1520400..1521224) 1 NC_011769.1 KEGG: dde:Dde_0707 formate dehydrogenase accessory protein FdhD; formate dehydrogenase accessory protein FdhD 1521224 7173135 DvMF_1232 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase accessory protein FdhD YP_002435650.1 1520400 R 883 CDS YP_002435651.1 218886330 7173136 complement(1521224..1522135) 1 NC_011769.1 PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_0706 formate dehydrogenase formation protein FdhE; formate dehydrogenase accessory protein 1522135 7173136 DvMF_1233 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase accessory protein YP_002435651.1 1521224 R 883 CDS YP_002435652.1 218886331 7173137 1522581..1523453 1 NC_011769.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; KEGG: rca:Rcas_3054 methionine-R-sulfoxide reductase; methionine-R-sulfoxide reductase 1523453 7173137 DvMF_1234 Desulfovibrio vulgaris str. 'Miyazaki F' methionine-R-sulfoxide reductase YP_002435652.1 1522581 D 883 CDS YP_002435653.1 218886332 7173138 1523509..1523808 1 NC_011769.1 KEGG: pin:Ping_2581 hypothetical protein; hypothetical protein 1523808 7173138 DvMF_1235 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435653.1 1523509 D 883 CDS YP_002435654.1 218886333 7173139 complement(1523943..1524692) 1 NC_011769.1 KEGG: sfu:Sfum_4078 hypothetical protein; hypothetical protein 1524692 7173139 DvMF_1236 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435654.1 1523943 R 883 CDS YP_002435655.1 218886334 7173140 complement(1524997..1525536) 1 NC_011769.1 PFAM: CreA family protein; KEGG: dar:Daro_1905 CreA; CreA family protein 1525536 7173140 DvMF_1237 Desulfovibrio vulgaris str. 'Miyazaki F' CreA family protein YP_002435655.1 1524997 R 883 CDS YP_002435656.1 218886335 7173141 complement(1525635..1527209) 1 NC_011769.1 KEGG: sfu:Sfum_1332 spermine synthase; spermine synthase 1527209 7173141 DvMF_1238 Desulfovibrio vulgaris str. 'Miyazaki F' spermine synthase YP_002435656.1 1525635 R 883 CDS YP_002435657.1 218886336 7173142 complement(1527595..1527954) 1 NC_011769.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: glo:Glov_0401 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 1527954 7173142 DvMF_1239 Desulfovibrio vulgaris str. 'Miyazaki F' TraR/DksA family transcriptional regulator YP_002435657.1 1527595 R 883 CDS YP_002435658.1 218886337 7173143 1529261..1530277 1 NC_011769.1 PFAM: integral membrane protein TerC; KEGG: sat:SYN_01926 tellurium resistance protein; integral membrane protein TerC 1530277 7173143 DvMF_1240 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane protein TerC YP_002435658.1 1529261 D 883 CDS YP_002435659.1 218886338 7173144 1530481..1530993 1 NC_011769.1 PFAM: ferric-uptake regulator; KEGG: sfu:Sfum_1722 ferric uptake regulator, Fur family; Fur family ferric uptake regulator 1530993 7173144 DvMF_1241 Desulfovibrio vulgaris str. 'Miyazaki F' Fur family ferric uptake regulator YP_002435659.1 1530481 D 883 CDS YP_002435660.1 218886339 7173145 1531306..1532748 1 NC_011769.1 PFAM: catalase domain protein; KEGG: har:HEAR1200 catalase (hydroperoxidase II); catalase 1532748 7173145 DvMF_1242 Desulfovibrio vulgaris str. 'Miyazaki F' catalase YP_002435660.1 1531306 D 883 CDS YP_002435661.1 218886340 7173146 complement(1533044..1535248) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 1535248 7173146 DvMF_1243 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002435661.1 1533044 R 883 CDS YP_002435662.1 218886341 7173147 complement(1535338..1536393) 1 NC_011769.1 KEGG: ppd:Ppro_1141 hypothetical protein; hypothetical protein 1536393 7173147 DvMF_1244 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435662.1 1535338 R 883 CDS YP_002435663.1 218886342 7173148 complement(1536607..1539450) 1 NC_011769.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mth:MTH1567 catalytic subunit of nitrate reductase (flp); molybdopterin oxidoreductase 1539450 7173148 DvMF_1245 Desulfovibrio vulgaris str. 'Miyazaki F' molybdopterin oxidoreductase YP_002435663.1 1536607 R 883 CDS YP_002435664.1 218886343 7173149 1539988..1541214 1 NC_011769.1 PFAM: D-alanine--D-alanine ligase domain protein; KEGG: sru:SRU_2197 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 1541214 7173149 DvMF_1246 Desulfovibrio vulgaris str. 'Miyazaki F' D-alanine--D-alanine ligase YP_002435664.1 1539988 D 883 CDS YP_002435665.1 218886344 7173150 1541573..1542517 1 NC_011769.1 PFAM: alpha/beta hydrolase fold; KEGG: tte:TTE2547 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold protein 1542517 7173150 DvMF_1247 Desulfovibrio vulgaris str. 'Miyazaki F' alpha/beta hydrolase fold protein YP_002435665.1 1541573 D 883 CDS YP_002435666.1 218886345 7173151 1542510..1544150 1 NC_011769.1 PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tme:Tmel_0488 Mur ligase middle domain-containing protein; Mur ligase middle domain-containing protein 1544150 7173151 DvMF_1248 Desulfovibrio vulgaris str. 'Miyazaki F' Mur ligase middle domain-containing protein YP_002435666.1 1542510 D 883 CDS YP_002435667.1 218886346 7173152 1544351..1545502 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gdi:GDI3707 GGDEF family signaling protein; diguanylate cyclase 1545502 7173152 DvMF_1249 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002435667.1 1544351 D 883 CDS YP_002435668.1 218886347 7173153 1545595..1546176 1 NC_011769.1 PFAM: cupin; KEGG: vha:VIBHAR_02199 hypothetical protein; cupin 1546176 7173153 DvMF_1250 Desulfovibrio vulgaris str. 'Miyazaki F' cupin YP_002435668.1 1545595 D 883 CDS YP_002435669.1 218886348 7173154 1546455..1549760 1 NC_011769.1 KEGG: glo:Glov_0558 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 1549760 7173154 DvMF_1251 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002435669.1 1546455 D 883 CDS YP_002435670.1 218886349 7173155 complement(1549883..1550725) 1 NC_011769.1 PFAM: ethanolamine ammonia-lyase light chain; KEGG: pen:PSEEN0631 ethanolamine ammonia-lyase small subunit; ethanolamine ammonia-lyase 1550725 7173155 DvMF_1252 Desulfovibrio vulgaris str. 'Miyazaki F' ethanolamine ammonia-lyase YP_002435670.1 1549883 R 883 CDS YP_002435671.1 218886350 7173156 complement(1550737..1552095) 1 NC_011769.1 PFAM: ethanolamine ammonia lyase large subunit; KEGG: psa:PST_3681 ethanolamine ammonia-lyase large subunit; ethanolamine ammonia lyase large subunit 1552095 7173156 DvMF_1253 Desulfovibrio vulgaris str. 'Miyazaki F' ethanolamine ammonia lyase large subunit YP_002435671.1 1550737 R 883 CDS YP_002435672.1 218886351 7173158 1552620..1553702 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: drm:Dred_1861 conserved hypothetical protein 698; hypothetical protein 1553702 7173158 DvMF_1255 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435672.1 1552620 D 883 CDS YP_002435673.1 218886352 7173159 1553719..1553817 1 NC_011769.1 hypothetical protein 1553817 7173159 DvMF_1256 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435673.1 1553719 D 883 CDS YP_002435674.1 218886353 7173160 1553885..1554328 1 NC_011769.1 KEGG: drm:Dred_1860 UspA domain protein; hypothetical protein 1554328 7173160 DvMF_1257 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435674.1 1553885 D 883 CDS YP_002435675.1 218886354 7173161 1554829..1555737 1 NC_011769.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: glo:Glov_1153 phosphonate ABC transporter periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 1555737 7173161 DvMF_1258 Desulfovibrio vulgaris str. 'Miyazaki F' phosphonate ABC transporter periplasmic phosphonate-binding protein YP_002435675.1 1554829 D 883 CDS YP_002435676.1 218886355 7173162 1555740..1557257 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gur:Gura_3624 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1557257 7173162 DvMF_1259 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002435676.1 1555740 D 883 CDS YP_002435677.1 218886356 7173163 1557254..1558612 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: gme:Gmet_2453 two component, sigma54 specific, transcriptional regulator, Fis family; Fis family transcriptional regulator 1558612 7173163 DvMF_1260 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435677.1 1557254 D 883 CDS YP_002435678.1 218886357 7173164 complement(1558929..1559639) 1 NC_011769.1 PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: lip:LI0836 predicted transcriptional regulator; phage repressor 1559639 7173164 DvMF_1261 Desulfovibrio vulgaris str. 'Miyazaki F' phage repressor YP_002435678.1 1558929 R 883 CDS YP_002435679.1 218886358 7173165 1559904..1560329 1 NC_011769.1 KEGG: dde:Dde_3347 hypothetical protein; hypothetical protein 1560329 7173165 DvMF_1262 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435679.1 1559904 D 883 CDS YP_002435680.1 218886359 7173166 1560326..1560601 1 NC_011769.1 KEGG: dde:Dde_3348 hypothetical protein; hypothetical protein 1560601 7173166 DvMF_1263 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435680.1 1560326 D 883 CDS YP_002435681.1 218886360 7173167 1560629..1562815 1 NC_011769.1 PFAM: transposase-like Mu; KEGG: dde:Dde_3350 bacteriophage transposase A protein; transposase-like Mu 1562815 7173167 DvMF_1264 Desulfovibrio vulgaris str. 'Miyazaki F' transposase-like Mu YP_002435681.1 1560629 D 883 CDS YP_002435682.1 218886361 7173168 1562812..1563513 1 NC_011769.1 KEGG: dde:Dde_3351 bacteriophage DNA transposition B protein; bacteriophage DNA transposition B protein 1563513 7173168 DvMF_1265 Desulfovibrio vulgaris str. 'Miyazaki F' bacteriophage DNA transposition B protein YP_002435682.1 1562812 D 883 CDS YP_002435683.1 218886362 7173169 1563516..1564160 1 NC_011769.1 KEGG: dde:Dde_3352 hypothetical protein; hypothetical protein 1564160 7173169 DvMF_1266 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435683.1 1563516 D 883 CDS YP_002435684.1 218886363 7173170 1564163..1564372 1 NC_011769.1 hypothetical protein 1564372 7173170 DvMF_1267 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435684.1 1564163 D 883 CDS YP_002435685.1 218886364 7173171 1564372..1564881 1 NC_011769.1 PFAM: Mu Gam family protein; KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam; Mu Gam family protein 1564881 7173171 DvMF_1268 Desulfovibrio vulgaris str. 'Miyazaki F' Mu Gam family protein YP_002435685.1 1564372 D 883 CDS YP_002435686.1 218886365 7173172 1564898..1565188 1 NC_011769.1 hypothetical protein 1565188 7173172 DvMF_1269 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435686.1 1564898 D 883 CDS YP_002435687.1 218886366 7173173 1565280..1565729 1 NC_011769.1 KEGG: dde:Dde_3357 hypothetical protein; hypothetical protein 1565729 7173173 DvMF_1270 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435687.1 1565280 D 883 CDS YP_002435688.1 218886367 7173174 1565726..1566229 1 NC_011769.1 KEGG: dde:Dde_3358 hypothetical protein; hypothetical protein 1566229 7173174 DvMF_1271 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435688.1 1565726 D 883 CDS YP_002435689.1 218886368 7173175 1566226..1566591 1 NC_011769.1 KEGG: dde:Dde_3359 hypothetical protein; hypothetical protein 1566591 7173175 DvMF_1272 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435689.1 1566226 D 883 CDS YP_002435690.1 218886369 7173176 1566572..1567039 1 NC_011769.1 KEGG: dde:Dde_3360 DNA-binding protein; DNA-binding protein 1567039 7173176 DvMF_1273 Desulfovibrio vulgaris str. 'Miyazaki F' DNA-binding protein YP_002435690.1 1566572 D 883 CDS YP_002435691.1 218886370 7173177 1567099..1568001 1 NC_011769.1 KEGG: glo:Glov_1411 hypothetical protein; hypothetical protein 1568001 7173177 DvMF_1274 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435691.1 1567099 D 883 CDS YP_002435692.1 218886371 7173178 1568071..1568472 1 NC_011769.1 KEGG: sgl:SG0829 hypothetical protein; hypothetical protein 1568472 7173178 DvMF_1275 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435692.1 1568071 D 883 CDS YP_002435693.1 218886372 7173179 1568472..1569143 1 NC_011769.1 PFAM: lytic transglycosylase catalytic; KEGG: bbr:BB3638 lytic murein transglycosylase precursor; lytic transglycosylase 1569143 7173179 DvMF_1276 Desulfovibrio vulgaris str. 'Miyazaki F' lytic transglycosylase YP_002435693.1 1568472 D 883 CDS YP_002435694.1 218886373 7173180 1569143..1569562 1 NC_011769.1 KEGG: jan:Jann_1769 mucin-associated surface protein; hypothetical protein 1569562 7173180 DvMF_1277 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435694.1 1569143 D 883 CDS YP_002435695.1 218886374 7173181 1569516..1569797 1 NC_011769.1 KEGG: mpa:MAP4242 hypothetical protein; hypothetical protein 1569797 7173181 DvMF_1278 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435695.1 1569516 D 883 CDS YP_002435696.1 218886375 7173182 1569794..1570288 1 NC_011769.1 KEGG: sfu:Sfum_1873 hypothetical protein; hypothetical protein 1570288 7173182 DvMF_1279 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435696.1 1569794 D 883 CDS YP_002435697.1 218886376 7173183 1570285..1570527 1 NC_011769.1 hypothetical protein 1570527 7173183 DvMF_1280 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435697.1 1570285 D 883 CDS YP_002435698.1 218886377 7173184 1570552..1571151 1 NC_011769.1 KEGG: dde:Dde_3371 hypothetical protein; hypothetical protein 1571151 7173184 DvMF_1281 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435698.1 1570552 D 883 CDS YP_002435699.1 218886378 7173185 1571281..1572762 1 NC_011769.1 KEGG: dde:Dde_3372 portal protein; portal protein 1572762 7173185 DvMF_1282 Desulfovibrio vulgaris str. 'Miyazaki F' portal protein YP_002435699.1 1571281 D 883 CDS YP_002435700.1 218886379 7173186 complement(1572739..1573671) 1 NC_011769.1 KEGG: ecs:ECs3507 hypothetical protein; hypothetical protein 1573671 7173186 DvMF_1283 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435700.1 1572739 R 883 CDS YP_002435701.1 218886380 7173187 1574616..1576190 1 NC_011769.1 PFAM: protein of unknown function DUF935; KEGG: dde:Dde_3373 hypothetical protein; hypothetical protein 1576190 7173187 DvMF_1284 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435701.1 1574616 D 883 CDS YP_002435702.1 218886381 7173188 1576192..1577493 1 NC_011769.1 TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; KEGG: dde:Dde_3374 phage head morphogenesis protein, SPP1 gp7; phage head morphogenesis protein 1577493 7173188 DvMF_1285 Desulfovibrio vulgaris str. 'Miyazaki F' phage head morphogenesis protein YP_002435702.1 1576192 D 883 CDS YP_002435703.1 218886382 7173189 1577634..1578614 1 NC_011769.1 KEGG: dde:Dde_3375 hypothetical protein; hypothetical protein 1578614 7173189 DvMF_1286 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435703.1 1577634 D 883 CDS YP_002435704.1 218886383 7173190 1578633..1578980 1 NC_011769.1 hypothetical protein 1578980 7173190 DvMF_1287 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435704.1 1578633 D 883 CDS YP_002435705.1 218886384 7173191 1578990..1579994 1 NC_011769.1 KEGG: dde:Dde_3377 hypothetical protein; hypothetical protein 1579994 7173191 DvMF_1288 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435705.1 1578990 D 883 CDS YP_002435706.1 218886385 7173192 1580199..1580630 1 NC_011769.1 PFAM: protein of unknown function DUF1320; KEGG: dde:Dde_3378 hypothetical protein; hypothetical protein 1580630 7173192 DvMF_1289 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435706.1 1580199 D 883 CDS YP_002435707.1 218886386 7173193 1580773..1581219 1 NC_011769.1 TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; KEGG: dde:Dde_3379 phage virion morphogenesis ( tail completion) protein; phage virion morphogenesis protein 1581219 7173193 DvMF_1290 Desulfovibrio vulgaris str. 'Miyazaki F' phage virion morphogenesis protein YP_002435707.1 1580773 D 883 CDS YP_002435708.1 218886387 7173194 1581216..1581752 1 NC_011769.1 KEGG: dde:Dde_3380 hypothetical protein; hypothetical protein 1581752 7173194 DvMF_1291 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435708.1 1581216 D 883 CDS YP_002435709.1 218886388 7173195 1581754..1582179 1 NC_011769.1 KEGG: eci:UTI89_C5135 hypothetical protein; hypothetical protein 1582179 7173195 DvMF_1292 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435709.1 1581754 D 883 CDS YP_002435710.1 218886389 7173196 1582195..1583880 1 NC_011769.1 KEGG: dde:Dde_3382 hypothetical protein; hypothetical protein 1583880 7173196 DvMF_1293 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435710.1 1582195 D 883 CDS YP_002435711.1 218886390 7173197 1583890..1584360 1 NC_011769.1 KEGG: dde:Dde_3383 hypothetical protein; hypothetical protein 1584360 7173197 DvMF_1294 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435711.1 1583890 D 883 CDS YP_002435712.1 218886391 7173198 1585244..1586284 1 NC_011769.1 hypothetical protein 1586284 7173198 DvMF_1295 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435712.1 1585244 D 883 CDS YP_002435713.1 218886392 7173199 1586463..1586819 1 NC_011769.1 hypothetical protein 1586819 7173199 DvMF_1296 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435713.1 1586463 D 883 CDS YP_002435714.1 218886393 7173200 1586867..1587004 1 NC_011769.1 hypothetical protein 1587004 7173200 DvMF_1297 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435714.1 1586867 D 883 CDS YP_002435715.1 218886394 7173201 1587062..1589407 1 NC_011769.1 TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: sew:SeSA_A4475 tail protein; phage tail tape measure protein, TP901 family 1589407 7173201 DvMF_1298 Desulfovibrio vulgaris str. 'Miyazaki F' phage tail tape measure protein, TP901 family YP_002435715.1 1587062 D 883 CDS YP_002435716.1 218886395 7173202 1589404..1589949 1 NC_011769.1 KEGG: dde:Dde_3387 hypothetical protein; hypothetical protein 1589949 7173202 DvMF_1299 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435716.1 1589404 D 883 CDS YP_002435717.1 218886396 7173203 1589949..1590749 1 NC_011769.1 KEGG: dde:Dde_3388 hypothetical protein; hypothetical protein 1590749 7173203 DvMF_1300 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435717.1 1589949 D 883 CDS YP_002435718.1 218886397 7173204 1590736..1591461 1 NC_011769.1 KEGG: dde:Dde_3389 baseplate assembly protein; baseplate assembly protein 1591461 7173204 DvMF_1301 Desulfovibrio vulgaris str. 'Miyazaki F' baseplate assembly protein YP_002435718.1 1590736 D 883 CDS YP_002435719.1 218886398 7173205 1592003..1592437 1 NC_011769.1 KEGG: dde:Dde_3390 baseplate assembly protein; baseplate assembly protein 1592437 7173205 DvMF_1302 Desulfovibrio vulgaris str. 'Miyazaki F' baseplate assembly protein YP_002435719.1 1592003 D 883 CDS YP_002435720.1 218886399 7173206 1592415..1593587 1 NC_011769.1 KEGG: dde:Dde_3391 baseplate assembly protein; baseplate assembly protein 1593587 7173206 DvMF_1303 Desulfovibrio vulgaris str. 'Miyazaki F' baseplate assembly protein YP_002435720.1 1592415 D 883 CDS YP_002435721.1 218886400 7173207 1593588..1594259 1 NC_011769.1 KEGG: dde:Dde_3392 hypothetical protein; hypothetical protein 1594259 7173207 DvMF_1304 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435721.1 1593588 D 883 CDS YP_002435722.1 218886401 7173208 1594256..1595773 1 NC_011769.1 KEGG: dde:Dde_3393 tail fiber protein; tail fiber protein 1595773 7173208 DvMF_1305 Desulfovibrio vulgaris str. 'Miyazaki F' tail fiber protein YP_002435722.1 1594256 D 883 CDS YP_002435723.1 218886402 7173209 1595784..1596242 1 NC_011769.1 KEGG: dde:Dde_3394 hypothetical protein; hypothetical protein 1596242 7173209 DvMF_1306 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435723.1 1595784 D 883 CDS YP_002435724.1 218886403 7173210 1596523..1596708 1 NC_011769.1 KEGG: dde:Dde_3395 hypothetical protein; hypothetical protein 1596708 7173210 DvMF_1307 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435724.1 1596523 D 883 CDS YP_002435725.1 218886404 7173211 1596692..1597453 1 NC_011769.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dde:Dde_1300 adenine specific DNA methyltransferase; DNA methylase N-4/N-6 domain-containing protein 1597453 7173211 DvMF_1308 Desulfovibrio vulgaris str. 'Miyazaki F' DNA methylase N-4/N-6 domain-containing protein YP_002435725.1 1596692 D 883 CDS YP_002435726.1 218886405 7173212 complement(1597531..1598331) 1 NC_011769.1 KEGG: ncr:NCU07561 hypothetical protein; hypothetical protein 1598331 7173212 DvMF_1309 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435726.1 1597531 R 883 CDS YP_002435727.1 218886406 7173214 1599296..1600795 1 NC_011769.1 KEGG: dde:Dde_3058 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1600795 7173214 DvMF_1310 Desulfovibrio vulgaris str. 'Miyazaki F' bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_002435727.1 1599296 D 883 CDS YP_002435728.1 218886407 7173215 1600841..1602361 1 NC_011769.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1602361 7173215 DvMF_1311 Desulfovibrio vulgaris str. 'Miyazaki F' selenocysteine synthase YP_002435728.1 1600841 D 883 CDS YP_002435729.1 218886408 7173216 1602444..1603436 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_3060 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 1603436 7173216 DvMF_1312 Desulfovibrio vulgaris str. 'Miyazaki F' NAD-dependent epimerase/dehydratase YP_002435729.1 1602444 D 883 CDS YP_002435730.1 218886409 7173217 complement(1603542..1604411) 1 NC_011769.1 KEGG: dde:Dde_3758 hypothetical protein; hypothetical protein 1604411 7173217 DvMF_1313 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435730.1 1603542 R 883 CDS YP_002435731.1 218886410 7173218 1604743..1606194 1 NC_011769.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1606194 7173218 DvMF_1314 Desulfovibrio vulgaris str. 'Miyazaki F' aminopeptidase YP_002435731.1 1604743 D 883 CDS YP_002435732.1 218886411 7173219 1606478..1607659 1 NC_011769.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3062 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 1607659 7173219 DvMF_1315 Desulfovibrio vulgaris str. 'Miyazaki F' iron-containing alcohol dehydrogenase YP_002435732.1 1606478 D 883 CDS YP_002435733.1 218886412 7173220 1608412..1609479 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_1135 hypothetical protein; hypothetical protein 1609479 7173220 DvMF_1316 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435733.1 1608412 D 883 CDS YP_002435734.1 218886413 7173221 complement(1609604..1610359) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2953 ATPase; ABC transporter 1610359 7173221 DvMF_1317 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435734.1 1609604 R 883 CDS YP_002435735.1 218886414 7173222 complement(1610356..1610925) 1 NC_011769.1 PFAM: BioY protein; KEGG: dde:Dde_2954 BioY family protein; BioY protein 1610925 7173222 DvMF_1318 Desulfovibrio vulgaris str. 'Miyazaki F' BioY protein YP_002435735.1 1610356 R 883 CDS YP_002435736.1 218886415 7173223 1611309..1612091 1 NC_011769.1 PFAM: Lipocalin; KEGG: dde:Dde_2955 hypothetical protein; Lipocalin 1612091 7173223 DvMF_1319 Desulfovibrio vulgaris str. 'Miyazaki F' Lipocalin YP_002435736.1 1611309 D 883 CDS YP_002435737.1 218886416 7173224 1612320..1612739 1 NC_011769.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 1612739 7173224 DvMF_1320 Desulfovibrio vulgaris str. 'Miyazaki F' nickel responsive regulator YP_002435737.1 1612320 D 883 CDS YP_002435738.1 218886417 7173225 1612758..1613537 1 NC_011769.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 1613537 7173225 DvMF_1321 Desulfovibrio vulgaris str. 'Miyazaki F' GTP cyclohydrolase YP_002435738.1 1612758 D 883 CDS YP_002435739.1 218886418 7173226 1613796..1614206 1 NC_011769.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_2958 flagellar basal-body rod protein; hypothetical protein 1614206 7173226 DvMF_1322 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435739.1 1613796 D 883 CDS YP_002435740.1 218886419 7173227 complement(1614584..1615597) 1 NC_011769.1 PFAM: Auxin Efflux Carrier; KEGG: dde:Dde_0880 hypothetical protein; auxin efflux carrier family protein 1615597 7173227 DvMF_1323 Desulfovibrio vulgaris str. 'Miyazaki F' auxin efflux carrier family protein YP_002435740.1 1614584 R 883 CDS YP_002435741.1 218886420 7173228 1616435..1617487 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: dde:Dde_2959 Fis family transcriptional regulator; Fis family transcriptional regulator 1617487 7173228 DvMF_1324 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435741.1 1616435 D 883 CDS YP_002435742.1 218886421 7173229 1617695..1621063 1 NC_011769.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_2960 TPR repeat-containing protein; hypothetical protein 1621063 7173229 DvMF_1325 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435742.1 1617695 D 883 CDS YP_002435743.1 218886422 7173230 1621300..1622148 1 NC_011769.1 PFAM: protein of unknown function DUF52; KEGG: dde:Dde_2961 hypothetical protein; hypothetical protein 1622148 7173230 DvMF_1326 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435743.1 1621300 D 883 CDS YP_002435744.1 218886423 7173231 1622511..1623554 1 NC_011769.1 KEGG: mma:MM_1125 hypothetical protein; hypothetical protein 1623554 7173231 DvMF_1327 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435744.1 1622511 D 883 CDS YP_002435745.1 218886424 7173232 complement(1623700..1623909) 1 NC_011769.1 KEGG: dde:Dde_2375 heavy metal-binding domain-containing protein; heavy metal-binding domain-containing protein 1623909 7173232 DvMF_1328 Desulfovibrio vulgaris str. 'Miyazaki F' heavy metal-binding domain-containing protein YP_002435745.1 1623700 R 883 CDS YP_002435746.1 218886425 7173233 1624200..1624493 1 NC_011769.1 KEGG: dde:Dde_2377 hypothetical protein; hypothetical protein 1624493 7173233 DvMF_1329 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435746.1 1624200 D 883 CDS YP_002435747.1 218886426 7173234 1624569..1626005 1 NC_011769.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1626005 7173234 DvMF_1330 Desulfovibrio vulgaris str. 'Miyazaki F' (dimethylallyl)adenosine tRNA methylthiotransferase YP_002435747.1 1624569 D 883 CDS YP_002435748.1 218886427 7173235 1626176..1626904 1 NC_011769.1 PFAM: protein of unknown function DUF151; KEGG: dde:Dde_2379 hypothetical protein; hypothetical protein 1626904 7173235 DvMF_1331 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435748.1 1626176 D 883 CDS YP_002435749.1 218886428 7173236 1627463..1628122 1 NC_011769.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pca:Pcar_1215 hypothetical protein; hypothetical protein 1628122 7173236 DvMF_1332 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435749.1 1627463 D 883 CDS YP_002435750.1 218886429 7173237 1628407..1628994 1 NC_011769.1 KEGG: dde:Dde_2382 hypothetical protein; hypothetical protein 1628994 7173237 DvMF_1333 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435750.1 1628407 D 883 CDS YP_002435751.1 218886430 7173238 1629160..1630653 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_2384 response regulator receiver domain-containing protein; response regulator receiver protein 1630653 7173238 DvMF_1334 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002435751.1 1629160 D 883 CDS YP_002435752.1 218886431 7173239 complement(1630797..1631336) 1 NC_011769.1 PFAM: protein of unknown function DUF615; KEGG: dde:Dde_1395 hypothetical protein; hypothetical protein 1631336 7173239 DvMF_1335 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435752.1 1630797 R 883 CDS YP_002435753.1 218886432 7173240 complement(1631516..1631998) 1 NC_011769.1 KEGG: dde:Dde_1393 hypothetical protein; hypothetical protein 1631998 7173240 DvMF_1336 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435753.1 1631516 R 883 CDS YP_002435754.1 218886433 7173241 complement(1632063..1632923) 1 NC_011769.1 TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1392 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyltransferase 1632923 7173241 DvMF_1337 Desulfovibrio vulgaris str. 'Miyazaki F' 4-hydroxybenzoate polyprenyltransferase YP_002435754.1 1632063 R 883 CDS YP_002435755.1 218886434 7173242 complement(1632955..1634310) 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1391 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1634310 7173242 DvMF_1338 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002435755.1 1632955 R 883 CDS YP_002435756.1 218886435 7173243 complement(1634497..1635312) 1 NC_011769.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dde:Dde_1390 molybdopterin binding domain-containing protein; molybdenum cofactor synthesis protein 1635312 7173243 DvMF_1339 Desulfovibrio vulgaris str. 'Miyazaki F' molybdenum cofactor synthesis protein YP_002435756.1 1634497 R 883 CDS YP_002435757.1 218886436 7173244 complement(1635494..1635907) 1 NC_011769.1 KEGG: dde:Dde_1389 hypothetical protein; hypothetical protein 1635907 7173244 DvMF_1340 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435757.1 1635494 R 883 CDS YP_002435758.1 218886437 7173245 complement(1636049..1636786) 1 NC_011769.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: dde:Dde_1388 amino acid transporter LysE; lysine exporter protein LysE/YggA 1636786 7173245 DvMF_1341 Desulfovibrio vulgaris str. 'Miyazaki F' lysine exporter protein LysE/YggA YP_002435758.1 1636049 R 883 CDS YP_002435759.1 218886438 7173246 complement(1637224..1637955) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1387 ATPase; ABC transporter 1637955 7173246 DvMF_1342 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435759.1 1637224 R 883 CDS YP_002435760.1 218886439 7173247 complement(1637952..1638965) 1 NC_011769.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_1386 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 1638965 7173247 DvMF_1343 Desulfovibrio vulgaris str. 'Miyazaki F' polar amino acid ABC transporter inner membrane protein YP_002435760.1 1637952 R 883 CDS YP_002435761.1 218886440 7173248 complement(1639431..1640249) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_1385 extracellular solute-binding protein; family 3 extracellular solute-binding protein 1640249 7173248 DvMF_1344 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002435761.1 1639431 R 883 CDS YP_002435762.1 218886441 7173249 complement(1640646..1640834) 1 NC_011769.1 KEGG: dde:Dde_1384 hypothetical protein; hypothetical protein 1640834 7173249 DvMF_1345 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435762.1 1640646 R 883 CDS YP_002435763.1 218886442 7173250 complement(1641007..1644060) 1 NC_011769.1 PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: dde:Dde_1382 glutamate dehydrogenase (NAD); Glu/Leu/Phe/Val dehydrogenase 1644060 7173250 DvMF_1346 Desulfovibrio vulgaris str. 'Miyazaki F' Glu/Leu/Phe/Val dehydrogenase YP_002435763.1 1641007 R 883 CDS YP_002435764.1 218886443 7173251 1644245..1644811 1 NC_011769.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1644811 7173251 DvMF_1347 Desulfovibrio vulgaris str. 'Miyazaki F' 7-cyano-7-deazaguanine reductase YP_002435764.1 1644245 D 883 CDS YP_002435765.1 218886444 7173252 complement(1645096..1647441) 1 NC_011769.1 PFAM: OstA family protein; organic solvent tolerance protein; KEGG: dde:Dde_1413 organic solvent tolerance protein; organic solvent tolerance protein 1647441 7173252 DvMF_1348 Desulfovibrio vulgaris str. 'Miyazaki F' organic solvent tolerance protein YP_002435765.1 1645096 R 883 CDS YP_002435766.1 218886445 7173253 1647728..1648846 1 NC_011769.1 KEGG: lip:LI0034 alanine racemase, catabolic; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 1648846 7173253 DvMF_1349 Desulfovibrio vulgaris str. 'Miyazaki F' alanine racemase YP_002435766.1 1647728 D 883 CDS YP_002435767.1 218886446 7173254 1648991..1649296 1 NC_011769.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1649296 rpsF 7173254 rpsF Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S6 YP_002435767.1 1648991 D 883 CDS YP_002435768.1 218886447 7173255 1649298..1649561 1 NC_011769.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1649561 rpsR 7173255 rpsR Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S18 YP_002435768.1 1649298 D 883 CDS YP_002435769.1 218886448 7173256 1649571..1650074 1 NC_011769.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1650074 rplI 7173256 rplI Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L9 YP_002435769.1 1649571 D 883 CDS YP_002435770.1 218886449 7173257 1650157..1651509 1 NC_011769.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; KEGG: dde:Dde_1409 primary replicative DNA helicase; replicative DNA helicase 1651509 7173257 DvMF_1353 Desulfovibrio vulgaris str. 'Miyazaki F' replicative DNA helicase YP_002435770.1 1650157 D 883 CDS YP_002435771.1 218886450 7173258 complement(1652559..1656845) 1 NC_011769.1 PFAM: protein of unknown function DUF748; KEGG: dde:Dde_0225 hypothetical protein; hypothetical protein 1656845 7173258 DvMF_1354 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435771.1 1652559 R 883 CDS YP_002435772.1 218886451 7173259 complement(1657098..1658600) 1 NC_011769.1 KEGG: ter:Tery_2034 RTX toxins and related Ca2+-binding protein; hypothetical protein 1658600 7173259 DvMF_1355 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435772.1 1657098 R 883 CDS YP_002435773.1 218886452 7173260 complement(1658791..1659990) 1 NC_011769.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1659990 7173260 DvMF_1356 Desulfovibrio vulgaris str. 'Miyazaki F' tyrosyl-tRNA synthetase YP_002435773.1 1658791 R 883 CDS YP_002435774.1 218886453 7173261 complement(1660217..1661059) 1 NC_011769.1 PFAM: metallophosphoesterase; KEGG: dde:Dde_0229 hypothetical protein; metallophosphoesterase 1661059 7173261 DvMF_1357 Desulfovibrio vulgaris str. 'Miyazaki F' metallophosphoesterase YP_002435774.1 1660217 R 883 CDS YP_002435775.1 218886454 7173262 complement(1661162..1662460) 1 NC_011769.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dde:Dde_0230 molybdopterin molybdochelatase; molybdenum cofactor synthesis protein 1662460 7173262 DvMF_1358 Desulfovibrio vulgaris str. 'Miyazaki F' molybdenum cofactor synthesis protein YP_002435775.1 1661162 R 883 CDS YP_002435776.1 218886455 7173263 1663045..1663962 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1146 hypothetical protein; hypothetical protein 1663962 7173263 DvMF_1359 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435776.1 1663045 D 883 CDS YP_002435777.1 218886456 7173264 complement(1663959..1665536) 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0879 two component Fis family transcriptional regulator; Fis family transcriptional regulator 1665536 7173264 DvMF_1360 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435777.1 1663959 R 883 CDS YP_002435778.1 218886457 7173265 complement(1665536..1668274) 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1668274 7173265 DvMF_1361 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002435778.1 1665536 R 883 CDS YP_002435779.1 218886458 7173266 complement(1668457..1668852) 1 NC_011769.1 KEGG: bld:BLi00801 hypothetical protein; hypothetical protein 1668852 7173266 DvMF_1362 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435779.1 1668457 R 883 CDS YP_002435780.1 218886459 7173267 complement(1668912..1670654) 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: dde:Dde_0876 hypothetical protein; hypothetical protein 1670654 7173267 DvMF_1363 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435780.1 1668912 R 883 CDS YP_002435781.1 218886460 7173268 complement(1670975..1671433) 1 NC_011769.1 PFAM: ferric-uptake regulator; KEGG: dde:Dde_2676 ferric uptake regulator family protein; Fur family ferric uptake regulator 1671433 7173268 DvMF_1364 Desulfovibrio vulgaris str. 'Miyazaki F' Fur family ferric uptake regulator YP_002435781.1 1670975 R 883 CDS YP_002435782.1 218886461 7173269 complement(1671662..1674568) 1 NC_011769.1 PFAM: peptidase M16 domain protein; peptidase M16C associated domain protein; KEGG: dde:Dde_2677 PreP peptidase; peptidase M16C associated domain protein 1674568 7173269 DvMF_1365 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M16C associated domain protein YP_002435782.1 1671662 R 883 CDS YP_002435783.1 218886462 7173270 complement(1674900..1675676) 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2680 diguanylate cyclase; diguanylate cyclase 1675676 7173270 DvMF_1366 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002435783.1 1674900 R 883 CDS YP_002435784.1 218886463 7173271 complement(1675713..1676474) 1 NC_011769.1 KEGG: dde:Dde_2681 hypothetical protein; hypothetical protein 1676474 7173271 DvMF_1367 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435784.1 1675713 R 883 CDS YP_002435785.1 218886464 7173272 complement(1676884..1677198) 1 NC_011769.1 PFAM: glycoside hydrolase family 13 domain protein; KEGG: dde:Dde_2682 isoamylase protein-like; glycoside hydrolase family protein 1677198 7173272 DvMF_1368 Desulfovibrio vulgaris str. 'Miyazaki F' glycoside hydrolase family protein YP_002435785.1 1676884 R 883 CDS YP_002435786.1 218886465 7173273 complement(1677671..1678063) 1 NC_011769.1 KEGG: dde:Dde_2685 hypothetical protein; hypothetical protein 1678063 7173273 DvMF_1369 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435786.1 1677671 R 883 CDS YP_002435787.1 218886466 7173274 complement(1678074..1678358) 1 NC_011769.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_2684 excisionase/Xis, DNA-binding; excisionase family DNA binding domain-containing protein 1678358 7173274 DvMF_1370 Desulfovibrio vulgaris str. 'Miyazaki F' excisionase family DNA binding domain-containing protein YP_002435787.1 1678074 R 883 CDS YP_002435788.1 218886467 7173276 complement(1679067..1681502) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_0703 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1681502 7173276 DvMF_1372 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_002435788.1 1679067 R 883 CDS YP_002435789.1 218886468 7173277 complement(1682190..1682438) 1 NC_011769.1 hypothetical protein 1682438 7173277 DvMF_1373 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435789.1 1682190 R 883 CDS YP_002435790.1 218886469 7173278 complement(1682438..1683664) 1 NC_011769.1 KEGG: rxy:Rxyl_0093 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein 1683664 7173278 DvMF_1374 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor protein YP_002435790.1 1682438 R 883 CDS YP_002435791.1 218886470 7173279 complement(1683633..1684976) 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_2687 PAS/PAC sensor signal transduction histidine kinase; histidine kinase 1684976 7173279 DvMF_1375 Desulfovibrio vulgaris str. 'Miyazaki F' histidine kinase YP_002435791.1 1683633 R 883 CDS YP_002435792.1 218886471 7173280 complement(1685336..1686184) 1 NC_011769.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: dde:Dde_2688 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 1686184 7173280 DvMF_1376 Desulfovibrio vulgaris str. 'Miyazaki F' phosphomethylpyrimidine kinase YP_002435792.1 1685336 R 883 CDS YP_002435793.1 218886472 7173281 complement(1686456..1687643) 1 NC_011769.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1687643 7173281 DvMF_1377 Desulfovibrio vulgaris str. 'Miyazaki F' gamma-glutamyl kinase YP_002435793.1 1686456 R 883 CDS YP_002435794.1 218886473 7173282 complement(1687691..1688797) 1 NC_011769.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1688797 obgE 7173282 obgE Desulfovibrio vulgaris str. 'Miyazaki F' GTPase ObgE YP_002435794.1 1687691 R 883 CDS YP_002435795.1 218886474 7173283 complement(1689242..1689511) 1 NC_011769.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1689511 rpmA 7173283 rpmA Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L27 YP_002435795.1 1689242 R 883 CDS YP_002435796.1 218886475 7173284 complement(1689530..1689838) 1 NC_011769.1 PFAM: ribosomal protein L21; KEGG: dde:Dde_2692 50S ribosomal protein L21P; 50S ribosomal protein L21 1689838 rplU 7173284 rplU Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L21 YP_002435796.1 1689530 R 883 CDS YP_002435797.1 218886476 7173285 1690621..1691499 1 NC_011769.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: dde:Dde_2693 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1691499 7173285 DvMF_1381 Desulfovibrio vulgaris str. 'Miyazaki F' glucose-1-phosphate thymidylyltransferase YP_002435797.1 1690621 D 883 CDS YP_002435798.1 218886477 7173286 complement(1691795..1691935) 1 NC_011769.1 hypothetical protein 1691935 7173286 DvMF_1382 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435798.1 1691795 R 883 CDS YP_002435799.1 218886478 7173287 1692323..1693762 1 NC_011769.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (uracil-5)-methyltransferase; KEGG: dde:Dde_2695 RNA methyltransferase; RNA methyltransferase, TrmA family 1693762 7173287 DvMF_1383 Desulfovibrio vulgaris str. 'Miyazaki F' RNA methyltransferase, TrmA family YP_002435799.1 1692323 D 883 CDS YP_002435800.1 218886479 7173288 complement(1693864..1694442) 1 NC_011769.1 KEGG: dde:Dde_2858 cytochrome C family protein; hypothetical protein 1694442 7173288 DvMF_1384 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435800.1 1693864 R 883 CDS YP_002435801.1 218886480 7173289 complement(1694721..1695182) 1 NC_011769.1 KEGG: mbn:Mboo_0041 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1695182 7173289 DvMF_1385 Desulfovibrio vulgaris str. 'Miyazaki F' pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_002435801.1 1694721 R 883 CDS YP_002435802.1 218886481 7173290 1695418..1695693 1 NC_011769.1 KEGG: dde:Dde_2698 ATP synthase protein I; ATP synthase protein I 1695693 7173290 DvMF_1386 Desulfovibrio vulgaris str. 'Miyazaki F' ATP synthase protein I YP_002435802.1 1695418 D 883 CDS YP_002435803.1 218886482 7173291 1695665..1696099 1 NC_011769.1 PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein; ATP synthase I 1696099 7173291 DvMF_1387 Desulfovibrio vulgaris str. 'Miyazaki F' ATP synthase I YP_002435803.1 1695665 D 883 CDS YP_002435804.1 218886483 7173292 1696103..1696804 1 NC_011769.1 TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; KEGG: dde:Dde_2700 ATP synthase F0 subunit alpha; ATP synthase F0 subunit alpha 1696804 7173292 DvMF_1388 Desulfovibrio vulgaris str. 'Miyazaki F' ATP synthase F0 subunit alpha YP_002435804.1 1696103 D 883 CDS YP_002435805.1 218886484 7173293 1696943..1697272 1 NC_011769.1 TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dde:Dde_2701 ATP synthase F0 C subunit; ATP synthase F0 C subunit 1697272 7173293 DvMF_1389 Desulfovibrio vulgaris str. 'Miyazaki F' ATP synthase F0 C subunit YP_002435805.1 1696943 D 883 CDS YP_002435806.1 218886485 7173294 1697385..1698032 1 NC_011769.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 1698032 7173294 DvMF_1390 Desulfovibrio vulgaris str. 'Miyazaki F' redox-sensing transcriptional repressor Rex YP_002435806.1 1697385 D 883 CDS YP_002435807.1 218886486 7173295 1698438..1699325 1 NC_011769.1 PFAM: protein of unknown function DUF62; KEGG: dde:Dde_2703 hypothetical protein; hypothetical protein 1699325 7173295 DvMF_1391 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435807.1 1698438 D 883 CDS YP_002435808.1 218886487 7173296 1699322..1700077 1 NC_011769.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dde:Dde_2704 cobalamin-5'-phosphate synthase; cobalamin-5-phosphate synthase CobS 1700077 7173296 DvMF_1392 Desulfovibrio vulgaris str. 'Miyazaki F' cobalamin-5-phosphate synthase CobS YP_002435808.1 1699322 D 883 CDS YP_002435809.1 218886488 7173297 1700278..1700718 1 NC_011769.1 TIGRFAM: flagellar export protein FliJ; KEGG: dde:Dde_2705 flagellar FliJ protein; flagellar export protein FliJ 1700718 7173297 DvMF_1393 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar export protein FliJ YP_002435809.1 1700278 D 883 CDS YP_002435810.1 218886489 7173298 1700675..1701652 1 NC_011769.1 KEGG: dde:Dde_2706 hypothetical protein; hypothetical protein 1701652 7173298 DvMF_1394 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435810.1 1700675 D 883 CDS YP_002435811.1 218886490 7173299 1701656..1702489 1 NC_011769.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1702489 truA 7173299 truA Desulfovibrio vulgaris str. 'Miyazaki F' tRNA pseudouridine synthase A YP_002435811.1 1701656 D 883 CDS YP_002435812.1 218886491 7173300 complement(1702796..1703776) 1 NC_011769.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: dde:Dde_2708 flagellar motor switch protein FliM; flagellar motor switch protein FliM 1703776 7173300 DvMF_1396 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar motor switch protein FliM YP_002435812.1 1702796 R 883 CDS YP_002435813.1 218886492 7173301 complement(1704097..1704564) 1 NC_011769.1 KEGG: dde:Dde_2710 hypothetical protein; hypothetical protein 1704564 7173301 DvMF_1397 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435813.1 1704097 R 883 CDS YP_002435814.1 218886493 7173302 1704829..1706886 1 NC_011769.1 KEGG: dde:Dde_2711 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 1706886 7173302 DvMF_1398 Desulfovibrio vulgaris str. 'Miyazaki F' iron-sulfur cluster-binding protein YP_002435814.1 1704829 D 883 CDS YP_002435815.1 218886494 7173303 1707374..1710295 1 NC_011769.1 PFAM: ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein; ribosomal small subunit Rsm22 1710295 7173303 DvMF_1399 Desulfovibrio vulgaris str. 'Miyazaki F' ribosomal small subunit Rsm22 YP_002435815.1 1707374 D 883 CDS YP_002435816.1 218886495 7173304 1710416..1711072 1 NC_011769.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: dde:Dde_2713 lipoate-protein ligase B; lipoate-protein ligase B 1711072 7173304 DvMF_1400 Desulfovibrio vulgaris str. 'Miyazaki F' lipoate-protein ligase B YP_002435816.1 1710416 D 883 CDS YP_002435817.1 218886496 7173305 1711008..1711910 1 NC_011769.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1711910 7173305 DvMF_1401 Desulfovibrio vulgaris str. 'Miyazaki F' lipoyl synthase YP_002435817.1 1711008 D 883 CDS YP_002435818.1 218886497 7173306 complement(1712411..1713799) 1 NC_011769.1 KEGG: dde:Dde_2722 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: radical SAM protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 1713799 7173306 DvMF_1402 Desulfovibrio vulgaris str. 'Miyazaki F' MiaB family RNA modification protein YP_002435818.1 1712411 R 883 CDS YP_002435819.1 218886498 7173307 complement(1713851..1715305) 1 NC_011769.1 PFAM: NLP/P60 protein; KEGG: dde:Dde_2724 NLP/P60 family lipoprotein; NLP/P60 protein 1715305 7173307 DvMF_1403 Desulfovibrio vulgaris str. 'Miyazaki F' NLP/P60 protein YP_002435819.1 1713851 R 883 CDS YP_002435820.1 218886499 7173308 complement(1715541..1717727) 1 NC_011769.1 KEGG: dde:Dde_2725 helicase RecD/TraA; TIGRFAM: helicase, RecD/TraA family; SMART: ATPase AAA; helicase, RecD/TraA family 1717727 7173308 DvMF_1404 Desulfovibrio vulgaris str. 'Miyazaki F' helicase, RecD/TraA family YP_002435820.1 1715541 R 883 CDS YP_002435821.1 218886500 7173309 1718357..1718824 1 NC_011769.1 KEGG: sat:SYN_01065 hypothetical protein; hypothetical protein 1718824 7173309 DvMF_1405 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435821.1 1718357 D 883 CDS YP_002435822.1 218886501 7173310 1718834..1719418 1 NC_011769.1 PFAM: OmpA/MotB domain protein; KEGG: sat:SYN_01064 outer membrane protein; OmpA/MotB domain-containing protein 1719418 7173310 DvMF_1406 Desulfovibrio vulgaris str. 'Miyazaki F' OmpA/MotB domain-containing protein YP_002435822.1 1718834 D 883 CDS YP_002435823.1 218886502 7173311 1719440..1721515 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; CHASE2 domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: dar:Daro_1897 metal-dependent phosphohydrolase; metal dependent phosphohydrolase 1721515 7173311 DvMF_1407 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002435823.1 1719440 D 883 CDS YP_002435824.1 218886503 7173312 complement(1721788..1722849) 1 NC_011769.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1722849 7173312 DvMF_1408 Desulfovibrio vulgaris str. 'Miyazaki F' chorismate synthase YP_002435824.1 1721788 R 883 CDS YP_002435825.1 218886504 7173313 complement(1723103..1723525) 1 NC_011769.1 PFAM: UspA domain protein; KEGG: dde:Dde_2727 universal stress protein; UspA domain-containing protein 1723525 7173313 DvMF_1409 Desulfovibrio vulgaris str. 'Miyazaki F' UspA domain-containing protein YP_002435825.1 1723103 R 883 CDS YP_002435826.1 218886505 7173314 complement(1723871..1724404) 1 NC_011769.1 PFAM: shikimate kinase; KEGG: ppd:Ppro_2361 shikimate kinase II; shikimate kinase 1724404 7173314 DvMF_1410 Desulfovibrio vulgaris str. 'Miyazaki F' shikimate kinase YP_002435826.1 1723871 R 883 CDS YP_002435827.1 218886506 7173315 1724828..1726012 1 NC_011769.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_2730 aminotransferase; class I and II aminotransferase 1726012 7173315 DvMF_1411 Desulfovibrio vulgaris str. 'Miyazaki F' class I and II aminotransferase YP_002435827.1 1724828 D 883 CDS YP_002435828.1 218886507 7173316 1726005..1727315 1 NC_011769.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1727315 7173316 DvMF_1412 Desulfovibrio vulgaris str. 'Miyazaki F' homoserine dehydrogenase YP_002435828.1 1726005 D 883 CDS YP_002435829.1 218886508 7173317 complement(1727449..1728258) 1 NC_011769.1 KEGG: dra:DR_1144 hypothetical protein; hypothetical protein 1728258 7173317 DvMF_1413 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435829.1 1727449 R 883 CDS YP_002435830.1 218886509 7173318 1728361..1729626 1 NC_011769.1 PFAM: metalloenzyme domain protein; KEGG: dde:Dde_2732 phosphoglycerate mutase; phosphoglycerate mutase 1729626 7173318 DvMF_1414 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoglycerate mutase YP_002435830.1 1728361 D 883 CDS YP_002435831.1 218886510 7173319 1729781..1730092 1 NC_011769.1 KEGG: paa:Paes_0502 hypothetical protein; hypothetical protein 1730092 7173319 DvMF_1415 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435831.1 1729781 D 883 CDS YP_002435832.1 218886511 7173320 complement(1730117..1730554) 1 NC_011769.1 KEGG: eba:ebA616 hypothetical protein; hypothetical protein 1730554 7173320 DvMF_1416 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435832.1 1730117 R 883 CDS YP_002435833.1 218886512 7173321 complement(1730606..1733521) 1 NC_011769.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; ATPase P; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY3476 hypothetical protein; ATPase P 1733521 7173321 DvMF_1417 Desulfovibrio vulgaris str. 'Miyazaki F' ATPase P YP_002435833.1 1730606 R 883 CDS YP_002435834.1 218886513 7173322 complement(1733583..1733864) 1 NC_011769.1 KEGG: tde:TDE0472 hypothetical protein; hypothetical protein 1733864 7173322 DvMF_1418 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435834.1 1733583 R 883 CDS YP_002435835.1 218886514 7173323 complement(1735325..1736980) 1 NC_011769.1 KEGG: rci:RCIX1753 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; signal transduction histidine kinase 1736980 7173323 DvMF_1419 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction histidine kinase YP_002435835.1 1735325 R 883 CDS YP_002435836.1 218886515 7173324 complement(1737018..1738172) 1 NC_011769.1 PFAM: MltA domain protein; 3D domain protein; KEGG: dde:Dde_2733 transglycosylase; MltA domain-containing protein 1738172 7173324 DvMF_1420 Desulfovibrio vulgaris str. 'Miyazaki F' MltA domain-containing protein YP_002435836.1 1737018 R 883 CDS YP_002435837.1 218886516 7173325 1738458..1738868 1 NC_011769.1 PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 1738868 7173325 DvMF_1421 Desulfovibrio vulgaris str. 'Miyazaki F' thioesterase superfamily protein YP_002435837.1 1738458 D 883 CDS YP_002435838.1 218886517 7173326 1739000..1739821 1 NC_011769.1 PFAM: amidohydrolase 2; KEGG: dde:Dde_2736 amidohydrolase family protein; amidohydrolase 1739821 7173326 DvMF_1422 Desulfovibrio vulgaris str. 'Miyazaki F' amidohydrolase YP_002435838.1 1739000 D 883 CDS YP_002435839.1 218886518 7173327 complement(1739952..1740854) 1 NC_011769.1 KEGG: dde:Dde_2962 hypothetical protein; hypothetical protein 1740854 7173327 DvMF_1423 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435839.1 1739952 R 883 CDS YP_002435840.1 218886519 7173328 1741176..1742612 1 NC_011769.1 PFAM: amidohydrolase; amidohydrolase; KEGG: dde:Dde_2963 amidohydrolase family protein; amidohydrolase 1742612 7173328 DvMF_1424 Desulfovibrio vulgaris str. 'Miyazaki F' amidohydrolase YP_002435840.1 1741176 D 883 CDS YP_002435841.1 218886520 7173329 1742627..1743604 1 NC_011769.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1743604 pyrB 7173329 pyrB Desulfovibrio vulgaris str. 'Miyazaki F' aspartate carbamoyltransferase catalytic subunit YP_002435841.1 1742627 D 883 CDS YP_002435842.1 218886521 7173330 1743601..1744881 1 NC_011769.1 KEGG: dde:Dde_2965 dihydroorotase; TIGRFAM: dihydroorotase; PFAM: amidohydrolase; dihydroorotase 1744881 7173330 DvMF_1426 Desulfovibrio vulgaris str. 'Miyazaki F' dihydroorotase YP_002435842.1 1743601 D 883 CDS YP_002435843.1 218886522 7173331 1746161..1747486 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2966 HD domain-containing protein; metal dependent phosphohydrolase 1747486 7173331 DvMF_1427 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002435843.1 1746161 D 883 CDS YP_002435844.1 218886523 7173332 complement(1747821..1748777) 1 NC_011769.1 PFAM: acyl-ACP thioesterase; KEGG: sru:SRU_0057 acyl-ACP thioesterase superfamily; acyl-ACP thioesterase 1748777 7173332 DvMF_1428 Desulfovibrio vulgaris str. 'Miyazaki F' acyl-ACP thioesterase YP_002435844.1 1747821 R 883 CDS YP_002435845.1 218886524 7173333 1749202..1749798 1 NC_011769.1 PFAM: regulatory protein MarR; KEGG: dps:DP1862 transcriptional regulator; MarR family transcriptional regulator 1749798 7173333 DvMF_1429 Desulfovibrio vulgaris str. 'Miyazaki F' MarR family transcriptional regulator YP_002435845.1 1749202 D 883 CDS YP_002435846.1 218886525 7173334 1749795..1751288 1 NC_011769.1 PFAM: major facilitator superfamily MFS_1; KEGG: dol:Dole_1452 major facilitator transporter; major facilitator superfamily protein 1751288 7173334 DvMF_1430 Desulfovibrio vulgaris str. 'Miyazaki F' major facilitator superfamily protein YP_002435846.1 1749795 D 883 CDS YP_002435847.1 218886526 7173335 1751563..1752666 1 NC_011769.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1752666 7173335 DvMF_1431 Desulfovibrio vulgaris str. 'Miyazaki F' ribosomal RNA large subunit methyltransferase N YP_002435847.1 1751563 D 883 CDS YP_002435848.1 218886527 7173336 complement(1753027..1754031) 1 NC_011769.1 KEGG: dde:Dde_2972 hypothetical protein; hypothetical protein 1754031 7173336 DvMF_1432 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435848.1 1753027 R 883 CDS YP_002435849.1 218886528 7173337 complement(1754175..1755470) 1 NC_011769.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3126 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 1755470 7173337 DvMF_1433 Desulfovibrio vulgaris str. 'Miyazaki F' iron-containing alcohol dehydrogenase YP_002435849.1 1754175 R 883 CDS YP_002435850.1 218886529 7173338 complement(1755813..1757306) 1 NC_011769.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_2973 DNA-directed DNA polymerase; DNA-directed DNA polymerase 1757306 7173338 DvMF_1434 Desulfovibrio vulgaris str. 'Miyazaki F' DNA-directed DNA polymerase YP_002435850.1 1755813 R 883 CDS YP_002435851.1 218886530 7173339 complement(1757591..1758043) 1 NC_011769.1 PFAM: peptidase S24 and S26 domain protein; KEGG: dde:Dde_2974 SOS mutagenesis protein UmuD; peptidase S24 and S26 domain-containing protein 1758043 7173339 DvMF_1435 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase S24 and S26 domain-containing protein YP_002435851.1 1757591 R 883 CDS YP_002435852.1 218886531 7173340 1758348..1759229 1 NC_011769.1 KEGG: dde:Dde_2975 hypothetical protein; hypothetical protein 1759229 7173340 DvMF_1436 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435852.1 1758348 D 883 CDS YP_002435853.1 218886532 7173341 1759456..1759872 1 NC_011769.1 PFAM: regulatory protein MarR; KEGG: dde:Dde_2977 MarR family transcriptional regulator; MarR family transcriptional regulator 1759872 7173341 DvMF_1437 Desulfovibrio vulgaris str. 'Miyazaki F' MarR family transcriptional regulator YP_002435853.1 1759456 D 883 CDS YP_002435854.1 218886533 7173342 complement(1760027..1760614) 1 NC_011769.1 PFAM: protein of unknown function UPF0016; KEGG: azo:azo0370 hypothetical protein; hypothetical protein 1760614 7173342 DvMF_1438 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435854.1 1760027 R 883 CDS YP_002435855.1 218886534 7173343 1761165..1761728 1 NC_011769.1 PFAM: GAF domain protein; KEGG: dde:Dde_3737 hypothetical protein; phytochrome sensor protein 1761728 7173343 DvMF_1439 Desulfovibrio vulgaris str. 'Miyazaki F' phytochrome sensor protein YP_002435855.1 1761165 D 883 CDS YP_002435856.1 218886535 7173344 1761740..1762756 1 NC_011769.1 KEGG: dde:Dde_3736 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 1762756 7173344 DvMF_1440 Desulfovibrio vulgaris str. 'Miyazaki F' glyceraldehyde-3-phosphate dehydrogenase YP_002435856.1 1761740 D 883 CDS YP_002435857.1 218886536 7173345 complement(1762881..1763711) 1 NC_011769.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; methyltransferase type 11; KEGG: dde:Dde_2981 hemolysin A; hemolysin A 1763711 7173345 DvMF_1441 Desulfovibrio vulgaris str. 'Miyazaki F' hemolysin A YP_002435857.1 1762881 R 883 CDS YP_002435858.1 218886537 7173346 1764133..1764348 1 NC_011769.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1764348 rpmE 7173346 rpmE Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L31 YP_002435858.1 1764133 D 883 CDS YP_002435859.1 218886538 7173347 1764461..1765540 1 NC_011769.1 PFAM: protein of unknown function DUF1385; KEGG: dde:Dde_2983 lipoprotein; hypothetical protein 1765540 7173347 DvMF_1443 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435859.1 1764461 D 883 CDS YP_002435860.1 218886539 7173348 1765544..1766617 1 NC_011769.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1766617 prfA 7173348 prfA Desulfovibrio vulgaris str. 'Miyazaki F' peptide chain release factor 1 YP_002435860.1 1765544 D 883 CDS YP_002435861.1 218886540 7173349 1766846..1767955 1 NC_011769.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: dde:Dde_2985 HemK family modification methylase; protein-(glutamine-N5) methyltransferase 1767955 7173349 DvMF_1445 Desulfovibrio vulgaris str. 'Miyazaki F' protein-(glutamine-N5) methyltransferase YP_002435861.1 1766846 D 883 CDS YP_002435862.1 218886541 7173350 1768205..1769155 1 NC_011769.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1769155 lpxC 7173350 lpxC Desulfovibrio vulgaris str. 'Miyazaki F' UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_002435862.1 1768205 D 883 CDS YP_002435863.1 218886542 7173355 1770299..1771492 1 NC_011769.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1771492 7173355 DvMF_1447 Desulfovibrio vulgaris str. 'Miyazaki F' elongation factor Tu YP_002435863.1 1770299 D 883 CDS YP_002435864.1 218886543 7173356 1771496..1771645 1 NC_011769.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1771645 rpmG 7173356 rpmG Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L33 YP_002435864.1 1771496 D 883 CDS YP_002435865.1 218886544 7173358 1771894..1772145 1 NC_011769.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1772145 secE 7173358 secE Desulfovibrio vulgaris str. 'Miyazaki F' preprotein translocase subunit SecE YP_002435865.1 1771894 D 883 CDS YP_002435866.1 218886545 7173359 1772157..1772711 1 NC_011769.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: dde:Dde_2991 transcription antitermination protein NusG; NusG antitermination factor 1772711 7173359 DvMF_1450 Desulfovibrio vulgaris str. 'Miyazaki F' NusG antitermination factor YP_002435866.1 1772157 D 883 CDS YP_002435867.1 218886546 7173360 1772776..1773198 1 NC_011769.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1773198 rplK 7173360 rplK Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L11 YP_002435867.1 1772776 D 883 CDS YP_002435868.1 218886547 7173361 1773336..1774043 1 NC_011769.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1774043 rplA 7173361 rplA Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L1 YP_002435868.1 1773336 D 883 CDS YP_002435869.1 218886548 7173362 1774228..1774749 1 NC_011769.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1774749 rplJ 7173362 rplJ Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L10 YP_002435869.1 1774228 D 883 CDS YP_002435870.1 218886549 7173363 1774806..1775189 1 NC_011769.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1775189 rplL 7173363 rplL Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L7/L12 YP_002435870.1 1774806 D 883 CDS YP_002435871.1 218886550 7173364 1775852..1779970 1 NC_011769.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1779970 rpoB 7173364 rpoB Desulfovibrio vulgaris str. 'Miyazaki F' DNA-directed RNA polymerase subunit beta YP_002435871.1 1775852 D 883 CDS YP_002435872.1 218886551 7173365 1780231..1784388 1 NC_011769.1 KEGG: dde:Dde_2998 DNA-directed RNA polymerase, acetylornithine deacetylase; TIGRFAM: DNA-directed RNA polymerase beta' subunit; PFAM: RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 1784388 7173365 DvMF_1456 Desulfovibrio vulgaris str. 'Miyazaki F' DNA-directed RNA polymerase subunit beta' YP_002435872.1 1780231 D 883 CDS YP_002435873.1 218886552 7173366 1784883..1785560 1 NC_011769.1 KEGG: dde:Dde_2999 hypothetical protein; hypothetical protein 1785560 7173366 DvMF_1457 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435873.1 1784883 D 883 CDS YP_002435874.1 218886553 7173367 1785575..1788112 1 NC_011769.1 KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1788112 7173367 DvMF_1458 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002435874.1 1785575 D 883 CDS YP_002435875.1 218886554 7173368 1788198..1789154 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: dde:Dde_3001 hypothetical protein; hypothetical protein 1789154 7173368 DvMF_1459 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435875.1 1788198 D 883 CDS YP_002435876.1 218886555 7173369 1789217..1790641 1 NC_011769.1 KEGG: dde:Dde_3002 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; hypothetical protein; metal-dependent hydrolase HDOD; SMART: PAS domain containing protein; metal-dependent phosphohydrolase HD region; PAS/PAC sensor protein 1790641 7173369 DvMF_1460 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor protein YP_002435876.1 1789217 D 883 CDS YP_002435877.1 218886556 7173370 1790674..1792149 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_3003 two component Fis family transcriptional regulator; Fis family transcriptional regulator 1792149 7173370 DvMF_1461 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435877.1 1790674 D 883 CDS YP_002435878.1 218886557 7173371 1792258..1793007 1 NC_011769.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1793007 gpmA 7173371 gpmA Desulfovibrio vulgaris str. 'Miyazaki F' phosphoglyceromutase YP_002435878.1 1792258 D 883 CDS YP_002435879.1 218886558 7173372 1793379..1794743 1 NC_011769.1 PFAM: hypothetical protein; response regulator receiver; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein; response regulator receiver protein 1794743 7173372 DvMF_1463 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002435879.1 1793379 D 883 CDS YP_002435880.1 218886559 7173373 1794909..1796081 1 NC_011769.1 PFAM: protein of unknown function DUF39; KEGG: dde:Dde_3007 hypothetical protein; hypothetical protein 1796081 7173373 DvMF_1464 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435880.1 1794909 D 883 CDS YP_002435881.1 218886560 7173374 1796668..1797522 1 NC_011769.1 KEGG: dde:Dde_3008 hypothetical protein; hypothetical protein 1797522 7173374 DvMF_1465 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435881.1 1796668 D 883 CDS YP_002435882.1 218886561 7173375 1797780..1797890 1 NC_011769.1 hypothetical protein 1797890 7173375 DvMF_1466 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435882.1 1797780 D 883 CDS YP_002435883.1 218886562 7173376 1798260..1798676 1 NC_011769.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: dde:Dde_3010 hypothetical protein; FmdB family regulatory protein 1798676 7173376 DvMF_1467 Desulfovibrio vulgaris str. 'Miyazaki F' FmdB family regulatory protein YP_002435883.1 1798260 D 883 CDS YP_002435884.1 218886563 7173377 1798933..1800231 1 NC_011769.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: dde:Dde_3011 adenylosuccinate lyase; adenylosuccinate lyase 1800231 7173377 DvMF_1468 Desulfovibrio vulgaris str. 'Miyazaki F' adenylosuccinate lyase YP_002435884.1 1798933 D 883 CDS YP_002435885.1 218886564 7173378 1800342..1800902 1 NC_011769.1 KEGG: dde:Dde_3012 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 1800902 7173378 DvMF_1469 Desulfovibrio vulgaris str. 'Miyazaki F' orotate phosphoribosyltransferase YP_002435885.1 1800342 D 883 CDS YP_002435886.1 218886565 7173379 1801188..1802486 1 NC_011769.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dde:Dde_3013 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 1802486 7173379 DvMF_1470 Desulfovibrio vulgaris str. 'Miyazaki F' ErfK/YbiS/YcfS/YnhG family protein YP_002435886.1 1801188 D 883 CDS YP_002435887.1 218886566 7173380 1802483..1803349 1 NC_011769.1 KEGG: dde:Dde_3014 hypothetical protein; hypothetical protein 1803349 7173380 DvMF_1471 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435887.1 1802483 D 883 CDS YP_002435888.1 218886567 7173381 complement(1803809..1804150) 1 NC_011769.1 KEGG: dde:Dde_3015 hypothetical protein; hypothetical protein 1804150 7173381 DvMF_1472 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435888.1 1803809 R 883 CDS YP_002435889.1 218886568 7173382 complement(1804298..1806412) 1 NC_011769.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1806412 7173382 DvMF_1473 Desulfovibrio vulgaris str. 'Miyazaki F' anaerobic ribonucleoside triphosphate reductase YP_002435889.1 1804298 R 883 CDS YP_002435890.1 218886569 7173383 1807139..1807966 1 NC_011769.1 PFAM: flagellin domain protein; KEGG: dde:Dde_3018 flagellin N-terminal domain-containing protein; flagellin domain-containing protein 1807966 7173383 DvMF_1474 Desulfovibrio vulgaris str. 'Miyazaki F' flagellin domain-containing protein YP_002435890.1 1807139 D 883 CDS YP_002435891.1 218886570 7173384 1808491..1808943 1 NC_011769.1 KEGG: dre:407680 sc:d0144; hypothetical protein 1808943 7173384 DvMF_1475 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435891.1 1808491 D 883 CDS YP_002435892.1 218886571 7173385 1809297..1809656 1 NC_011769.1 PFAM: protein of unknown function DUF486; KEGG: rsq:Rsph17025_2306 protein of unknown function DUF486; hypothetical protein 1809656 7173385 DvMF_1476 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435892.1 1809297 D 883 CDS YP_002435893.1 218886572 7173386 complement(1809643..1811835) 1 NC_011769.1 KEGG: bur:Bcep18194_B1707 diguanylate cyclase (GGDEF domain); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 1811835 7173386 DvMF_1477 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor-containing diguanylate cyclase YP_002435893.1 1809643 R 883 CDS YP_002435894.1 218886573 7173387 complement(1812242..1813459) 1 NC_011769.1 PFAM: extracellular ligand-binding receptor; KEGG: sfu:Sfum_0378 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1813459 7173387 DvMF_1478 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular ligand-binding receptor YP_002435894.1 1812242 R 883 CDS YP_002435895.1 218886574 7173388 complement(1813563..1814333) 1 NC_011769.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: fal:FRAAL6172 GntR-family transcription regulator; GntR family transcriptional regulator 1814333 7173388 DvMF_1479 Desulfovibrio vulgaris str. 'Miyazaki F' GntR family transcriptional regulator YP_002435895.1 1813563 R 883 CDS YP_002435896.1 218886575 7173389 complement(1814333..1815175) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fal:FRAAL0729 high-affinity branched-chain amino acid transporter (ABC superfamily, atp_bind); ABC transporter 1815175 7173389 DvMF_1480 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435896.1 1814333 R 883 CDS YP_002435897.1 218886576 7173390 complement(1815168..1815947) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_0890 ABC transporter; ABC transporter 1815947 7173390 DvMF_1481 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435897.1 1815168 R 883 CDS YP_002435898.1 218886577 7173391 complement(1815944..1817026) 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: gme:Gmet_1821 inner-membrane translocator; inner-membrane translocator 1817026 7173391 DvMF_1482 Desulfovibrio vulgaris str. 'Miyazaki F' inner-membrane translocator YP_002435898.1 1815944 R 883 CDS YP_002435899.1 218886578 7173392 complement(1817023..1817910) 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: glo:Glov_1862 inner-membrane translocator; inner-membrane translocator 1817910 7173392 DvMF_1483 Desulfovibrio vulgaris str. 'Miyazaki F' inner-membrane translocator YP_002435899.1 1817023 R 883 CDS YP_002435900.1 218886579 7173393 1818308..1820527 1 NC_011769.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pth:PTH_2707 anaerobic dehydrogenases; nitrate reductase 1820527 7173393 DvMF_1484 Desulfovibrio vulgaris str. 'Miyazaki F' nitrate reductase YP_002435900.1 1818308 D 883 CDS YP_002435901.1 218886580 7173394 1820831..1822540 1 NC_011769.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1822540 7173394 DvMF_1485 Desulfovibrio vulgaris str. 'Miyazaki F' glutaminyl-tRNA synthetase YP_002435901.1 1820831 D 883 CDS YP_002435902.1 218886581 7173395 complement(1822679..1823794) 1 NC_011769.1 PFAM: GTPase EngC; KEGG: pph:Ppha_1108 GTPase EngC; GTPase EngC 1823794 7173395 DvMF_1486 Desulfovibrio vulgaris str. 'Miyazaki F' GTPase EngC YP_002435902.1 1822679 R 883 CDS YP_002435903.1 218886582 7173396 complement(1823858..1824394) 1 NC_011769.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VF1120 acetyltransferase; N-acetyltransferase GCN5 1824394 7173396 DvMF_1487 Desulfovibrio vulgaris str. 'Miyazaki F' N-acetyltransferase GCN5 YP_002435903.1 1823858 R 883 CDS YP_002435904.1 218886583 7173399 1825362..1826702 1 NC_011769.1 PFAM: protein of unknown function DUF1063; KEGG: dde:Dde_0807 hypothetical protein; hypothetical protein 1826702 7173399 DvMF_1488 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435904.1 1825362 D 883 CDS YP_002435905.1 218886584 7173400 complement(1826834..1827526) 1 NC_011769.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: cvi:CV_0188 homoserine/homoserine lactone efflux protein; lysine exporter protein LysE/YggA 1827526 7173400 DvMF_1489 Desulfovibrio vulgaris str. 'Miyazaki F' lysine exporter protein LysE/YggA YP_002435905.1 1826834 R 883 CDS YP_002435906.1 218886585 7173401 complement(1828105..1829694) 1 NC_011769.1 PFAM: cytochrome C552; KEGG: lip:LI1002 chain A, cytochrome C nitrite reductase; nitrite reductase 1829694 7173401 DvMF_1490 Desulfovibrio vulgaris str. 'Miyazaki F' nitrite reductase YP_002435906.1 1828105 R 883 CDS YP_002435907.1 218886586 7173402 complement(1829699..1830178) 1 NC_011769.1 KEGG: lip:LI1001 cytochrome C nitrite reductase small subunit; cytochrome C nitrite reductase small subunit 1830178 7173402 DvMF_1491 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C nitrite reductase small subunit YP_002435907.1 1829699 R 883 CDS YP_002435908.1 218886587 7173403 1830504..1833593 1 NC_011769.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: lch:Lcho_4210 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 1833593 7173403 DvMF_1492 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002435908.1 1830504 D 883 CDS YP_002435909.1 218886588 7173404 1833593..1835533 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: gbm:Gbem_0673 two component, sigma54 specific, transcriptional regulator, fis family; Fis family transcriptional regulator 1835533 7173404 DvMF_1493 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435909.1 1833593 D 883 CDS YP_002435910.1 218886589 7173405 1836270..1837622 1 NC_011769.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 1837622 7173405 DvMF_1494 Desulfovibrio vulgaris str. 'Miyazaki F' TolC family type I secretion outer membrane protein YP_002435910.1 1836270 D 883 CDS YP_002435911.1 218886590 7173406 complement(1838241..1845677) 1 NC_011769.1 PFAM: Hemolysin-type calcium-binding region; von Willebrand factor A; KEGG: asa:ASA_1675 hemolysin-type calcium-binding repeat-containing protein; von Willebrand factor A 1845677 7173406 DvMF_1495 Desulfovibrio vulgaris str. 'Miyazaki F' von Willebrand factor A YP_002435911.1 1838241 R 883 CDS YP_002435912.1 218886591 7173407 1846656..1847657 1 NC_011769.1 PFAM: anaerobic cobalt chelatase; KEGG: dde:Dde_3103 cobalamin biosynthesis protein CbiK Co2+ chelatase-like; anaerobic cobalt chelatase 1847657 7173407 DvMF_1496 Desulfovibrio vulgaris str. 'Miyazaki F' anaerobic cobalt chelatase YP_002435912.1 1846656 D 883 CDS YP_002435913.1 218886592 7173408 1847657..1848820 1 NC_011769.1 PFAM: transporter permease; KEGG: dde:Dde_3104 iron compound ABC transporter permease; transporter permease 1848820 7173408 DvMF_1497 Desulfovibrio vulgaris str. 'Miyazaki F' transporter permease YP_002435913.1 1847657 D 883 CDS YP_002435914.1 218886593 7173409 1848817..1849830 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_3105 ATPase; ABC transporter 1849830 7173409 DvMF_1498 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435914.1 1848817 D 883 CDS YP_002435915.1 218886594 7173410 1849823..1850971 1 NC_011769.1 PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter periplasmic iron compount-binding protein; periplasmic binding protein 1850971 7173410 DvMF_1499 Desulfovibrio vulgaris str. 'Miyazaki F' periplasmic binding protein YP_002435915.1 1849823 D 883 CDS YP_002435916.1 218886595 7173411 1851059..1851838 1 NC_011769.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3107 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase; precorrin-2 C(20)-methyltransferase 1851838 7173411 DvMF_1500 Desulfovibrio vulgaris str. 'Miyazaki F' precorrin-2 C(20)-methyltransferase YP_002435916.1 1851059 D 883 CDS YP_002435917.1 218886596 7173412 complement(1852305..1854350) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 1854350 7173412 DvMF_1501 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Cache sensor YP_002435917.1 1852305 R 883 CDS YP_002435918.1 218886597 7173413 complement(1854593..1855336) 1 NC_011769.1 PFAM: protein of unknown function DUF330; KEGG: rsq:Rsph17025_1717 ABC-type uncharacterized transporter auxiliary component-like protein; ABC transporter 1855336 7173413 DvMF_1502 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435918.1 1854593 R 883 CDS YP_002435919.1 218886598 7173414 complement(1855333..1856256) 1 NC_011769.1 PFAM: hypothetical protein; KEGG: pla:Plav_2514 mammalian cell entry related domain protein; hypothetical protein 1856256 7173414 DvMF_1503 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435919.1 1855333 R 883 CDS YP_002435920.1 218886599 7173415 complement(1856258..1857109) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pla:Plav_2513 ABC transporter; ABC transporter 1857109 7173415 DvMF_1504 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435920.1 1856258 R 883 CDS YP_002435921.1 218886600 7173416 complement(1857111..1858403) 1 NC_011769.1 PFAM: protein of unknown function DUF140; KEGG: pla:Plav_2512 protein of unknown function DUF140; hypothetical protein 1858403 7173416 DvMF_1505 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435921.1 1857111 R 883 CDS YP_002435922.1 218886601 7173417 complement(1858835..1859107) 1 NC_011769.1 hypothetical protein 1859107 7173417 DvMF_1506 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435922.1 1858835 R 883 CDS YP_002435923.1 218886602 7173418 complement(1859336..1860139) 1 NC_011769.1 PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: par:Psyc_1134 hypothetical protein; extradiol ring-cleavage dioxygenase class III protein subunit B 1860139 7173418 DvMF_1507 Desulfovibrio vulgaris str. 'Miyazaki F' extradiol ring-cleavage dioxygenase class III protein subunit B YP_002435923.1 1859336 R 883 CDS YP_002435924.1 218886603 7173419 complement(1860298..1860729) 1 NC_011769.1 hypothetical protein 1860729 7173419 DvMF_1508 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435924.1 1860298 R 883 CDS YP_002435925.1 218886604 7173420 complement(1860825..1861259) 1 NC_011769.1 hypothetical protein 1861259 7173420 DvMF_1509 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435925.1 1860825 R 883 CDS YP_002435926.1 218886605 7173421 complement(1861644..1863056) 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3040 two component Fis family transcriptional regulator; Fis family transcriptional regulator 1863056 7173421 DvMF_1510 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002435926.1 1861644 R 883 CDS YP_002435927.1 218886606 7173422 1863263..1864009 1 NC_011769.1 KEGG: dps:DP0367 hypothetical protein; hypothetical protein 1864009 7173422 DvMF_1511 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435927.1 1863263 D 883 CDS YP_002435928.1 218886607 7173423 1864156..1864542 1 NC_011769.1 TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: dde:Dde_2582 endoribonuclease L-PSP; endoribonuclease L-PSP 1864542 7173423 DvMF_1512 Desulfovibrio vulgaris str. 'Miyazaki F' endoribonuclease L-PSP YP_002435928.1 1864156 D 883 CDS YP_002435929.1 218886608 7173424 1864919..1865803 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1151 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1865803 7173424 DvMF_1513 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002435929.1 1864919 D 883 CDS YP_002435930.1 218886609 7173425 1865800..1866957 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_3998 diguanylate cyclase; diguanylate cyclase 1866957 7173425 DvMF_1514 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002435930.1 1865800 D 883 CDS YP_002435931.1 218886610 7173426 complement(1867171..1870287) 1 NC_011769.1 PFAM: acriflavin resistance protein; KEGG: gur:Gura_2371 acriflavin resistance protein; acriflavin resistance protein 1870287 7173426 DvMF_1515 Desulfovibrio vulgaris str. 'Miyazaki F' acriflavin resistance protein YP_002435931.1 1867171 R 883 CDS YP_002435932.1 218886611 7173427 complement(1870284..1871606) 1 NC_011769.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gme:Gmet_1651 secretion protein HlyD; RND family efflux transporter MFP subunit 1871606 7173427 DvMF_1516 Desulfovibrio vulgaris str. 'Miyazaki F' RND family efflux transporter MFP subunit YP_002435932.1 1870284 R 883 CDS YP_002435933.1 218886612 7173428 complement(1871603..1872721) 1 NC_011769.1 PFAM: regulatory protein TetR; transcriptional regulator TetR; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator; TetR family transcriptional regulator 1872721 7173428 DvMF_1517 Desulfovibrio vulgaris str. 'Miyazaki F' TetR family transcriptional regulator YP_002435933.1 1871603 R 883 CDS YP_002435934.1 218886613 7173429 1873516..1875462 1 NC_011769.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tte:TTE0123 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, Mnhsubunit alpha; NADH dehydrogenase (quinone) 1875462 7173429 DvMF_1518 Desulfovibrio vulgaris str. 'Miyazaki F' NADH dehydrogenase (quinone) YP_002435934.1 1873516 D 883 CDS YP_002435935.1 218886614 7173430 1875462..1876310 1 NC_011769.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: tte:TTE0124 NADH:ubiquinone oxidoreductase subunit 1 (chain H); respiratory-chain NADH dehydrogenase subunit 1 1876310 7173430 DvMF_1519 Desulfovibrio vulgaris str. 'Miyazaki F' respiratory-chain NADH dehydrogenase subunit 1 YP_002435935.1 1875462 D 883 CDS YP_002435936.1 218886615 7173431 1876326..1876799 1 NC_011769.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: mbn:Mboo_0026 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 1876799 7173431 DvMF_1520 Desulfovibrio vulgaris str. 'Miyazaki F' NADH ubiquinone oxidoreductase 20 kDa subunit YP_002435936.1 1876326 D 883 CDS YP_002435937.1 218886616 7173432 1876925..1877317 1 NC_011769.1 KEGG: csc:Csac_1537 NADH dehydrogenase (ubiquinone), 30 kDa subunit; hypothetical protein 1877317 7173432 DvMF_1521 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435937.1 1876925 D 883 CDS YP_002435938.1 218886617 7173433 1877330..1878406 1 NC_011769.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: tte:TTE0127 NADH:ubiquinone oxidoreductase 49 kD subunit 7; NADH-ubiquinone oxidoreductase chain 49kDa 1878406 7173433 DvMF_1522 Desulfovibrio vulgaris str. 'Miyazaki F' NADH-ubiquinone oxidoreductase chain 49kDa YP_002435938.1 1877330 D 883 CDS YP_002435939.1 218886618 7173434 1878423..1878818 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tte:TTE0128 formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); 4Fe-4S ferredoxin 1878818 7173434 DvMF_1523 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002435939.1 1878423 D 883 CDS YP_002435940.1 218886619 7173435 complement(1879034..1879681) 1 NC_011769.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: mac:MA0328 flavoredoxin; flavin reductase domain-containing FMN-binding protein 1879681 7173435 DvMF_1524 Desulfovibrio vulgaris str. 'Miyazaki F' flavin reductase domain-containing FMN-binding protein YP_002435940.1 1879034 R 883 CDS YP_002435941.1 218886620 7173436 complement(1879804..1880109) 1 NC_011769.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: bpd:BURPS668_1728 antibiotic biosynthesis monooxygenase family protein; antibiotic biosynthesis monooxygenase 1880109 7173436 DvMF_1525 Desulfovibrio vulgaris str. 'Miyazaki F' antibiotic biosynthesis monooxygenase YP_002435941.1 1879804 R 883 CDS YP_002435942.1 218886621 7173437 1880415..1881662 1 NC_011769.1 TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: mja:MJ0718 chromate resistance protein (ChrA); chromate transporter chromate ion transporter (CHR) family 1881662 7173437 DvMF_1526 Desulfovibrio vulgaris str. 'Miyazaki F' chromate transporter chromate ion transporter (CHR) family YP_002435942.1 1880415 D 883 CDS YP_002435943.1 218886622 7173438 complement(1881861..1882715) 1 NC_011769.1 KEGG: dde:Dde_0591 hypothetical protein; hypothetical protein 1882715 7173438 DvMF_1527 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435943.1 1881861 R 883 CDS YP_002435944.1 218886623 7173439 complement(1883223..1884692) 1 NC_011769.1 PFAM: phospholipase D/transphosphatidylase; KEGG: dde:Dde_0590 cardiolipin synthetase 2; phospholipase D/transphosphatidylase 1884692 7173439 DvMF_1528 Desulfovibrio vulgaris str. 'Miyazaki F' phospholipase D/transphosphatidylase YP_002435944.1 1883223 R 883 CDS YP_002435945.1 218886624 7173440 complement(1884765..1885190) 1 NC_011769.1 PFAM: UspA domain protein; KEGG: dde:Dde_0589 universal stress protein; UspA domain-containing protein 1885190 7173440 DvMF_1529 Desulfovibrio vulgaris str. 'Miyazaki F' UspA domain-containing protein YP_002435945.1 1884765 R 883 CDS YP_002435946.1 218886625 7173441 1885562..1888252 1 NC_011769.1 KEGG: mgm:Mmc1_1829 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1888252 7173441 DvMF_1530 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_002435946.1 1885562 D 883 CDS YP_002435947.1 218886626 7173442 complement(1888675..1888866) 1 NC_011769.1 hypothetical protein 1888866 7173442 DvMF_1531 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435947.1 1888675 R 883 CDS YP_002435948.1 218886627 7173443 complement(1889088..1890305) 1 NC_011769.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dde:Dde_0573 carboxynorspermidine decarboxylase; carboxynorspermidine decarboxylase 1890305 7173443 DvMF_1532 Desulfovibrio vulgaris str. 'Miyazaki F' carboxynorspermidine decarboxylase YP_002435948.1 1889088 R 883 CDS YP_002435949.1 218886628 7173444 complement(1890393..1891082) 1 NC_011769.1 KEGG: rfr:Rfer_0025 hypothetical protein; hypothetical protein 1891082 7173444 DvMF_1533 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435949.1 1890393 R 883 CDS YP_002435950.1 218886629 7173445 complement(1891066..1891599) 1 NC_011769.1 KEGG: xac:XAC1166 hypothetical protein; hypothetical protein 1891599 7173445 DvMF_1534 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435950.1 1891066 R 883 CDS YP_002435951.1 218886630 7173446 complement(1891930..1893120) 1 NC_011769.1 PFAM: saccharopine dehydrogenase; KEGG: dde:Dde_0572 saccharopine dehydrogenase; saccharopine dehydrogenase 1893120 7173446 DvMF_1535 Desulfovibrio vulgaris str. 'Miyazaki F' saccharopine dehydrogenase YP_002435951.1 1891930 R 883 CDS YP_002435952.1 218886631 7173447 complement(1893516..1895453) 1 NC_011769.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1895453 7173447 DvMF_1536 Desulfovibrio vulgaris str. 'Miyazaki F' arginine decarboxylase YP_002435952.1 1893516 R 883 CDS YP_002435953.1 218886632 7173448 1896369..1897514 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0569 diguanylate cyclase; diguanylate cyclase 1897514 7173448 DvMF_1537 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002435953.1 1896369 D 883 CDS YP_002435954.1 218886633 7173449 complement(1897638..1899203) 1 NC_011769.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: dde:Dde_0568 leucyl aminopeptidase; leucyl aminopeptidase 1899203 7173449 DvMF_1538 Desulfovibrio vulgaris str. 'Miyazaki F' leucyl aminopeptidase YP_002435954.1 1897638 R 883 CDS YP_002435955.1 218886634 7173450 complement(1899558..1900877) 1 NC_011769.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: dde:Dde_1253 malate dehydrogenase; malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) 1900877 7173450 DvMF_1539 Desulfovibrio vulgaris str. 'Miyazaki F' malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) YP_002435955.1 1899558 R 883 CDS YP_002435956.1 218886635 7173451 1901070..1902434 1 NC_011769.1 PFAM: cation transporter; KEGG: dde:Dde_0567 TrkH family potassium uptake protein; H(+)-transporting two-sector ATPase 1902434 7173451 DvMF_1540 Desulfovibrio vulgaris str. 'Miyazaki F' H(+)-transporting two-sector ATPase YP_002435956.1 1901070 D 883 CDS YP_002435957.1 218886636 7173452 1902471..1903136 1 NC_011769.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dde:Dde_0566 potassium uptake protein TrkA; TrkA-N domain-containing protein 1903136 7173452 DvMF_1541 Desulfovibrio vulgaris str. 'Miyazaki F' TrkA-N domain-containing protein YP_002435957.1 1902471 D 883 CDS YP_002435958.1 218886637 7173453 complement(1903359..1904237) 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0530 hypothetical protein; hypothetical protein 1904237 7173453 DvMF_1542 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435958.1 1903359 R 883 CDS YP_002435959.1 218886638 7173454 1904584..1905237 1 NC_011769.1 TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: nmn:NMCC_1878 RlpA-like protein precursor; lipoprotein A 1905237 7173454 DvMF_1543 Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein A YP_002435959.1 1904584 D 883 CDS YP_002435960.1 218886639 7173455 1905797..1908016 1 NC_011769.1 KEGG: dde:Dde_0532 response regulator receiver/GGDEF/PAS/PAC domain-containing protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1908016 7173455 DvMF_1544 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_002435960.1 1905797 D 883 CDS YP_002435961.1 218886640 7173456 complement(1908197..1908547) 1 NC_011769.1 KEGG: dde:Dde_0563 hypothetical protein; hypothetical protein 1908547 7173456 DvMF_1545 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435961.1 1908197 R 883 CDS YP_002435962.1 218886641 7173457 complement(1908553..1909158) 1 NC_011769.1 KEGG: dde:Dde_0564 hypothetical protein; hypothetical protein 1909158 7173457 DvMF_1546 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435962.1 1908553 R 883 CDS YP_002435963.1 218886642 7173458 complement(1909312..1911069) 1 NC_011769.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_0565 heptosyltransferase family protein; glycosyl transferase family protein 1911069 7173458 DvMF_1547 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002435963.1 1909312 R 883 CDS YP_002435964.1 218886643 7173459 complement(1911304..1912083) 1 NC_011769.1 TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: dde:Dde_0519 lipoprotein A; lipoprotein A 1912083 7173459 DvMF_1548 Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein A YP_002435964.1 1911304 R 883 CDS YP_002435965.1 218886644 7173460 complement(1912568..1914397) 1 NC_011769.1 PFAM: pyruvate carboxyltransferase; KEGG: dde:Dde_0520 HMGL-like domain-containing protein; pyruvate carboxyltransferase 1914397 7173460 DvMF_1549 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate carboxyltransferase YP_002435965.1 1912568 R 883 CDS YP_002435966.1 218886645 7173461 complement(1914400..1915182) 1 NC_011769.1 KEGG: dde:Dde_0521 hypothetical protein; hypothetical protein 1915182 7173461 DvMF_1550 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435966.1 1914400 R 883 CDS YP_002435967.1 218886646 7173462 complement(1915395..1916093) 1 NC_011769.1 KEGG: dde:Dde_0523 hypothetical protein; hypothetical protein 1916093 7173462 DvMF_1551 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435967.1 1915395 R 883 CDS YP_002435968.1 218886647 7173463 complement(1916224..1916481) 1 NC_011769.1 KEGG: dde:Dde_0524 hypothetical protein; hypothetical protein 1916481 7173463 DvMF_1552 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435968.1 1916224 R 883 CDS YP_002435969.1 218886648 7173464 1917013..1918326 1 NC_011769.1 KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type subunit alpha; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type subunit alpha 1918326 7173464 DvMF_1553 Desulfovibrio vulgaris str. 'Miyazaki F' sulfite reductase, dissimilatory-type subunit alpha YP_002435969.1 1917013 D 883 CDS YP_002435970.1 218886649 7173465 1918345..1919490 1 NC_011769.1 KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type subunit beta; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type subunit beta 1919490 7173465 DvMF_1554 Desulfovibrio vulgaris str. 'Miyazaki F' sulfite reductase, dissimilatory-type subunit beta YP_002435970.1 1918345 D 883 CDS YP_002435971.1 218886650 7173466 1919554..1919787 1 NC_011769.1 PFAM: Dissimilatory sulfite reductase D; KEGG: dde:Dde_0528 dissimilatory sulfite reductase B; dissimilatory sulfite reductase D 1919787 7173466 DvMF_1555 Desulfovibrio vulgaris str. 'Miyazaki F' dissimilatory sulfite reductase D YP_002435971.1 1919554 D 883 CDS YP_002435972.1 218886651 7173467 1919938..1921626 1 NC_011769.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dde:Dde_0529 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1921626 7173467 DvMF_1556 Desulfovibrio vulgaris str. 'Miyazaki F' cobyrinic acid a,c-diamide synthase YP_002435972.1 1919938 D 883 CDS YP_002435973.1 218886652 7173468 1922088..1922984 1 NC_011769.1 KEGG: dde:Dde_2627 hypothetical protein; hypothetical protein 1922984 7173468 DvMF_1557 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435973.1 1922088 D 883 CDS YP_002435974.1 218886653 7173469 1923113..1923562 1 NC_011769.1 PFAM: regulatory protein MarR; KEGG: pmy:Pmen_1814 MarR family transcriptional regulator; MarR family transcriptional regulator 1923562 7173469 DvMF_1558 Desulfovibrio vulgaris str. 'Miyazaki F' MarR family transcriptional regulator YP_002435974.1 1923113 D 883 CDS YP_002435975.1 218886654 7173470 1923649..1925157 1 NC_011769.1 PFAM: sodium/sulfate symporter; citrate transporter; KEGG: mag:amb4188 di- and tricarboxylate transporters; sodium/sulfate symporter 1925157 7173470 DvMF_1559 Desulfovibrio vulgaris str. 'Miyazaki F' sodium/sulfate symporter YP_002435975.1 1923649 D 883 CDS YP_002435976.1 218886655 7173471 complement(1925395..1925688) 1 NC_011769.1 PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_0517 histone-like DNA-binding protein; histone family protein DNA-binding protein 1925688 7173471 DvMF_1560 Desulfovibrio vulgaris str. 'Miyazaki F' histone family protein DNA-binding protein YP_002435976.1 1925395 R 883 CDS YP_002435977.1 218886656 7173472 complement(1925715..1926134) 1 NC_011769.1 PFAM: histidine triad (HIT) protein; KEGG: lip:LI0430 141aa long hypothetical histidine triad nucleotide-binding protein; histidine triad (HIT) protein 1926134 7173472 DvMF_1561 Desulfovibrio vulgaris str. 'Miyazaki F' histidine triad (HIT) protein YP_002435977.1 1925715 R 883 CDS YP_002435978.1 218886657 7173473 1926567..1927772 1 NC_011769.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: lip:LI0429 coproporphyrinogen III oxidase and related Fe-S oxidoreductases; radical SAM protein 1927772 7173473 DvMF_1562 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002435978.1 1926567 D 883 CDS YP_002435979.1 218886658 7173474 complement(1927836..1929035) 1 NC_011769.1 TIGRFAM: uracil-DNA glycosylase; PFAM: uracil-DNA glycosylase superfamily; KEGG: shn:Shewana3_3221 uracil-DNA glycosylase; uracil-DNA glycosylase 1929035 7173474 DvMF_1563 Desulfovibrio vulgaris str. 'Miyazaki F' uracil-DNA glycosylase YP_002435979.1 1927836 R 883 CDS YP_002435980.1 218886659 7173475 complement(1929036..1930238) 1 NC_011769.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; KEGG: dde:Dde_0513 aminotransferase; class I and II aminotransferase 1930238 7173475 DvMF_1564 Desulfovibrio vulgaris str. 'Miyazaki F' class I and II aminotransferase YP_002435980.1 1929036 R 883 CDS YP_002435981.1 218886660 7173476 1930611..1931303 1 NC_011769.1 KEGG: dde:Dde_0512 hypothetical protein; hypothetical protein 1931303 7173476 DvMF_1565 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435981.1 1930611 D 883 CDS YP_002435982.1 218886661 7173477 complement(1931444..1933318) 1 NC_011769.1 hypothetical protein 1933318 7173477 DvMF_1566 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435982.1 1931444 R 883 CDS YP_002435983.1 218886662 7173478 complement(1933443..1934867) 1 NC_011769.1 PFAM: FAD linked oxidase; KEGG: dde:Dde_0182 D-lactate dehydrogenase (cytochrome); D-lactate dehydrogenase 1934867 7173478 DvMF_1567 Desulfovibrio vulgaris str. 'Miyazaki F' D-lactate dehydrogenase YP_002435983.1 1933443 R 883 CDS YP_002435984.1 218886663 7173479 complement(1934970..1935644) 1 NC_011769.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0183 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 1935644 7173479 DvMF_1568 Desulfovibrio vulgaris str. 'Miyazaki F' polar amino acid ABC transporter inner membrane protein YP_002435984.1 1934970 R 883 CDS YP_002435985.1 218886664 7173480 complement(1935644..1936429) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0184 ATPase; ABC transporter 1936429 7173480 DvMF_1569 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002435985.1 1935644 R 883 CDS YP_002435986.1 218886665 7173481 complement(1936440..1937120) 1 NC_011769.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0185 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 1937120 7173481 DvMF_1570 Desulfovibrio vulgaris str. 'Miyazaki F' polar amino acid ABC transporter inner membrane protein YP_002435986.1 1936440 R 883 CDS YP_002435987.1 218886666 7173482 complement(1937297..1938046) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0186 extracellular solute-binding protein; family 3 extracellular solute-binding protein 1938046 7173482 DvMF_1571 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002435987.1 1937297 R 883 CDS YP_002435988.1 218886667 7173483 1938349..1938921 1 NC_011769.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: dde:Dde_0187 flavoredoxin; flavin reductase domain-containing FMN-binding protein 1938921 7173483 DvMF_1572 Desulfovibrio vulgaris str. 'Miyazaki F' flavin reductase domain-containing FMN-binding protein YP_002435988.1 1938349 D 883 CDS YP_002435989.1 218886668 7173484 1939091..1940503 1 NC_011769.1 KEGG: lip:LI0512 sugar transferases involved in lipopolysaccharide synthesis; TIGRFAM: undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; undecaprenyl-phosphate galactose phosphotransferase, WbaP 1940503 7173484 DvMF_1573 Desulfovibrio vulgaris str. 'Miyazaki F' undecaprenyl-phosphate galactose phosphotransferase, WbaP YP_002435989.1 1939091 D 883 CDS YP_002435990.1 218886669 7173485 1940552..1941691 1 NC_011769.1 PFAM: glycosyl transferase family 9; KEGG: bxe:Bxe_A3715 hypothetical protein; glycosyl transferase family protein 1941691 7173485 DvMF_1574 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002435990.1 1940552 D 883 CDS YP_002435991.1 218886670 7173486 complement(1941786..1943498) 1 NC_011769.1 TIGRFAM: sulfate transporter; PFAM: sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: dde:Dde_2506 sulfate permease; sulfate transporter 1943498 7173486 DvMF_1575 Desulfovibrio vulgaris str. 'Miyazaki F' sulfate transporter YP_002435991.1 1941786 R 883 CDS YP_002435992.1 218886671 7173487 complement(1944294..1945604) 1 NC_011769.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: scl:sce0089 AraC family transcriptional regulator; AraC family transcriptional regulator 1945604 7173487 DvMF_1576 Desulfovibrio vulgaris str. 'Miyazaki F' AraC family transcriptional regulator YP_002435992.1 1944294 R 883 CDS YP_002435993.1 218886672 7173488 complement(1945775..1946011) 1 NC_011769.1 KEGG: dde:Dde_3025 hypothetical protein; hypothetical protein 1946011 7173488 DvMF_1577 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435993.1 1945775 R 883 CDS YP_002435994.1 218886673 7173492 1947107..1947307 1 NC_011769.1 hypothetical protein 1947307 7173492 DvMF_1578 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002435994.1 1947107 D 883 CDS YP_002435995.1 218886674 7173493 1947345..1948133 1 NC_011769.1 PFAM: polysaccharide deacetylase; KEGG: mag:amb2885 xylanase/chitin deacetylase; polysaccharide deacetylase 1948133 7173493 DvMF_1579 Desulfovibrio vulgaris str. 'Miyazaki F' polysaccharide deacetylase YP_002435995.1 1947345 D 883 CDS YP_002435996.1 218886675 7173494 1948892..1950076 1 NC_011769.1 PFAM: extracellular ligand-binding receptor; KEGG: sfu:Sfum_0314 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1950076 7173494 DvMF_1580 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular ligand-binding receptor YP_002435996.1 1948892 D 883 CDS YP_002435997.1 218886676 7173495 1950400..1951326 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: sfu:Sfum_0313 inner-membrane translocator; inner-membrane translocator 1951326 7173495 DvMF_1581 Desulfovibrio vulgaris str. 'Miyazaki F' inner-membrane translocator YP_002435997.1 1950400 D 883 CDS YP_002435998.1 218886677 7173496 1951323..1952264 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: pth:PTH_0460 ABC-type branched-chain amino acid transporter, permeasecomponent; branched-chain amino acid ABC transporter permease 1952264 7173496 DvMF_1582 Desulfovibrio vulgaris str. 'Miyazaki F' branched-chain amino acid ABC transporter permease YP_002435998.1 1951323 D 883 CDS YP_002435999.1 218886678 7173497 1952261..1952983 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gsu:GSU2008 branched-chain amino acid ABC transporter ATP-binding protein; branched-chain amino acid ABC transporter ATP-binding protein 1952983 7173497 DvMF_1583 Desulfovibrio vulgaris str. 'Miyazaki F' branched-chain amino acid ABC transporter ATP-binding protein YP_002435999.1 1952261 D 883 CDS YP_002436000.1 218886679 7173498 1952976..1953680 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_0310 ABC transporter; ABC transporter 1953680 7173498 DvMF_1584 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436000.1 1952976 D 883 CDS YP_002436001.1 218886680 7173499 1953720..1954373 1 NC_011769.1 PFAM: CBS domain containing protein; KEGG: dde:Dde_0765 CBS; hypothetical protein 1954373 7173499 DvMF_1585 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436001.1 1953720 D 883 CDS YP_002436002.1 218886681 7173500 1954748..1955749 1 NC_011769.1 PFAM: extracellular solute-binding protein family 1; KEGG: pmu:PM1457 hypothetical protein; extracellular solute-binding protein 1955749 7173500 DvMF_1586 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular solute-binding protein YP_002436002.1 1954748 D 883 CDS YP_002436003.1 218886682 7173501 1955919..1957019 1 NC_011769.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: asu:Asuc_1717 ABC transporter; ABC transporter 1957019 7173501 DvMF_1587 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436003.1 1955919 D 883 CDS YP_002436004.1 218886683 7173502 1957021..1958712 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: pmu:PM1455 AfuB; binding-protein-dependent transporters inner membrane component 1958712 7173502 DvMF_1588 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002436004.1 1957021 D 883 CDS YP_002436005.1 218886684 7173503 1958723..1959787 1 NC_011769.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: pmu:PM1454 MsmK; ABC transporter 1959787 7173503 DvMF_1589 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436005.1 1958723 D 883 CDS YP_002436006.1 218886685 7173504 1960345..1962525 1 NC_011769.1 PFAM: glutamine synthetase; KEGG: dde:Dde_0102 glutamine synthetaseII; glutamine synthetase 1962525 7173504 DvMF_1590 Desulfovibrio vulgaris str. 'Miyazaki F' glutamine synthetase YP_002436006.1 1960345 D 883 CDS YP_002436007.1 218886686 7173505 1962768..1963142 1 NC_011769.1 KEGG: dde:Dde_0268 hypothetical protein; hypothetical protein 1963142 7173505 DvMF_1591 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436007.1 1962768 D 883 CDS YP_002436008.1 218886687 7173506 1964121..1965011 1 NC_011769.1 KEGG: ret:RHE_CH02651 hypothetical protein; hypothetical protein 1965011 7173506 DvMF_1592 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436008.1 1964121 D 883 CDS YP_002436009.1 218886688 7173507 1966029..1966409 1 NC_011769.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: sfu:Sfum_0199 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 1966409 7173507 DvMF_1593 Desulfovibrio vulgaris str. 'Miyazaki F' NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_002436009.1 1966029 D 883 CDS YP_002436010.1 218886689 7173508 1966385..1966948 1 NC_011769.1 KEGG: ote:Oter_0744 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase subunit beta; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit beta 1966948 7173508 DvMF_1594 Desulfovibrio vulgaris str. 'Miyazaki F' NADH-quinone oxidoreductase subunit beta YP_002436010.1 1966385 D 883 CDS YP_002436011.1 218886690 7173509 1966945..1967550 1 NC_011769.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dps:DP1319 NADH dehydrogenase, subunit 9; NADH dehydrogenase (ubiquinone) 30 kDa subunit 1967550 7173509 DvMF_1595 Desulfovibrio vulgaris str. 'Miyazaki F' NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_002436011.1 1966945 D 883 CDS YP_002436012.1 218886691 7173510 1967543..1968763 1 NC_011769.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: dps:DP1318 NADH dehydrogenase, subunit 7; NADH dehydrogenase (quinone) 1968763 7173510 DvMF_1596 Desulfovibrio vulgaris str. 'Miyazaki F' NADH dehydrogenase (quinone) YP_002436012.1 1967543 D 883 CDS YP_002436013.1 218886692 7173511 1968770..1969744 1 NC_011769.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sfu:Sfum_0203 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) 1969744 7173511 DvMF_1597 Desulfovibrio vulgaris str. 'Miyazaki F' NADH dehydrogenase (quinone) YP_002436013.1 1968770 D 883 CDS YP_002436014.1 218886693 7173512 1969948..1970571 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ote:Oter_0748 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1970571 7173512 DvMF_1598 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002436014.1 1969948 D 883 CDS YP_002436015.1 218886694 7173513 1970573..1971079 1 NC_011769.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: rrs:RoseRS_2995 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 1971079 7173513 DvMF_1599 Desulfovibrio vulgaris str. 'Miyazaki F' NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_002436015.1 1970573 D 883 CDS YP_002436016.1 218886695 7173514 1971076..1971390 1 NC_011769.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: sfu:Sfum_0206 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L 1971390 7173514 DvMF_1600 Desulfovibrio vulgaris str. 'Miyazaki F' NADH-ubiquinone oxidoreductase chain 4L YP_002436016.1 1971076 D 883 CDS YP_002436017.1 218886696 7173515 1971390..1972889 1 NC_011769.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 1972889 7173515 DvMF_1601 Desulfovibrio vulgaris str. 'Miyazaki F' monovalent cation/H+ antiporter subunit D YP_002436017.1 1971390 D 883 CDS YP_002436018.1 218886697 7173516 1972900..1973157 1 NC_011769.1 KEGG: ote:Oter_0752 hypothetical protein; hypothetical protein 1973157 7173516 DvMF_1602 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436018.1 1972900 D 883 CDS YP_002436019.1 218886698 7173517 1973144..1974928 1 NC_011769.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit D 1974928 7173517 DvMF_1603 Desulfovibrio vulgaris str. 'Miyazaki F' monovalent cation/H+ antiporter subunit D YP_002436019.1 1973144 D 883 CDS YP_002436020.1 218886699 7173518 1974962..1976521 1 NC_011769.1 KEGG: ote:Oter_0754 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1976521 7173518 DvMF_1604 Desulfovibrio vulgaris str. 'Miyazaki F' proton-translocating NADH-quinone oxidoreductase subunit M YP_002436020.1 1974962 D 883 CDS YP_002436021.1 218886700 7173519 1976518..1977945 1 NC_011769.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ote:Oter_0755 proton-translocating NADH-quinone oxidoreductase, chain N; NADH dehydrogenase (quinone) 1977945 7173519 DvMF_1605 Desulfovibrio vulgaris str. 'Miyazaki F' NADH dehydrogenase (quinone) YP_002436021.1 1976518 D 883 CDS YP_002436022.1 218886701 7173520 1978169..1979344 1 NC_011769.1 KEGG: met:M446_0014 hypothetical protein; hypothetical protein 1979344 7173520 DvMF_1606 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436022.1 1978169 D 883 CDS YP_002436023.1 218886702 7173521 complement(1979489..1980199) 1 NC_011769.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ppd:Ppro_3481 two component LuxR family transcriptional regulator; LuxR family transcriptional regulator 1980199 7173521 DvMF_1607 Desulfovibrio vulgaris str. 'Miyazaki F' LuxR family transcriptional regulator YP_002436023.1 1979489 R 883 CDS YP_002436024.1 218886703 7173522 complement(1980187..1981884) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: gme:Gmet_2788 histidine kinase; histidine kinase 1981884 7173522 DvMF_1608 Desulfovibrio vulgaris str. 'Miyazaki F' histidine kinase YP_002436024.1 1980187 R 883 CDS YP_002436025.1 218886704 7173523 complement(1981997..1982851) 1 NC_011769.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1379 cytoplasmic chaperone TorD; cytoplasmic chaperone TorD family protein 1982851 7173523 DvMF_1609 Desulfovibrio vulgaris str. 'Miyazaki F' cytoplasmic chaperone TorD family protein YP_002436025.1 1981997 R 883 CDS YP_002436026.1 218886705 7173524 complement(1982935..1983810) 1 NC_011769.1 KEGG: sth:STH2330 anaerobic dimethyl sulfoxide reductase subunit C; anaerobic dimethyl sulfoxide reductase subunit C 1983810 7173524 DvMF_1610 Desulfovibrio vulgaris str. 'Miyazaki F' anaerobic dimethyl sulfoxide reductase subunit C YP_002436026.1 1982935 R 883 CDS YP_002436027.1 218886706 7173525 complement(1983815..1984432) 1 NC_011769.1 TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pac:PPA0516 anaerobic dimethyl sulfoxide reductase, chain B; dimethylsulfoxide reductase subunit B 1984432 7173525 DvMF_1611 Desulfovibrio vulgaris str. 'Miyazaki F' dimethylsulfoxide reductase subunit B YP_002436027.1 1983815 R 883 CDS YP_002436028.1 218886707 7173526 complement(1984422..1986884) 1 NC_011769.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: apl:APL_1674 anaerobic dimethyl sulfoxide reductase chain A precursor; anaerobic dimethyl sulfoxide reductase subunit A 1986884 7173526 DvMF_1612 Desulfovibrio vulgaris str. 'Miyazaki F' anaerobic dimethyl sulfoxide reductase subunit A YP_002436028.1 1984422 R 883 CDS YP_002436029.1 218886708 7173527 1987501..1989144 1 NC_011769.1 PFAM: molybdopterin binding domain; formylmethanofuran dehydrogenase subunit E region; KEGG: sfu:Sfum_0032 molybdopterin binding domain; formylmethanofuran dehydrogenase subunit E 1989144 7173527 DvMF_1613 Desulfovibrio vulgaris str. 'Miyazaki F' formylmethanofuran dehydrogenase subunit E YP_002436029.1 1987501 D 883 CDS YP_002436030.1 218886709 7173528 1989372..1990472 1 NC_011769.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bte:BTH_I1692 AraC family transcriptional regulator; AraC family transcriptional regulator 1990472 7173528 DvMF_1614 Desulfovibrio vulgaris str. 'Miyazaki F' AraC family transcriptional regulator YP_002436030.1 1989372 D 883 CDS YP_002436031.1 218886710 7173529 1990770..1991183 1 NC_011769.1 KEGG: amt:Amet_1548 hypothetical protein; hypothetical protein 1991183 7173529 DvMF_1615 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436031.1 1990770 D 883 CDS YP_002436032.1 218886711 7173530 1991555..1991902 1 NC_011769.1 hypothetical protein 1991902 7173530 DvMF_1616 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436032.1 1991555 D 883 CDS YP_002436033.1 218886712 7173531 1991877..1992545 1 NC_011769.1 PFAM: flagellar hook capping protein; KEGG: bph:Bphy_2950 flagellar hook capping protein; flagellar hook capping protein 1992545 7173531 DvMF_1617 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar hook capping protein YP_002436033.1 1991877 D 883 CDS YP_002436034.1 218886713 7173532 1992579..1994156 1 NC_011769.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: dde:Dde_1711 flagellar hook protein FlgE; hypothetical protein 1994156 7173532 DvMF_1618 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436034.1 1992579 D 883 CDS YP_002436035.1 218886714 7173533 1994374..1996446 1 NC_011769.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3152 flagellar hook-associated protein; flagellar hook-associated protein FlgK 1996446 7173533 DvMF_1619 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar hook-associated protein FlgK YP_002436035.1 1994374 D 883 CDS YP_002436036.1 218886715 7173534 1996482..1997975 1 NC_011769.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL; flagellar hook-associated protein 3 1997975 7173534 DvMF_1620 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar hook-associated protein 3 YP_002436036.1 1996482 D 883 CDS YP_002436037.1 218886716 7173535 1998119..1999858 1 NC_011769.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: dde:Dde_1120 flagellar hook-associated protein 2; flagellar hook-associated protein 2 domain-containing protein 1999858 7173535 DvMF_1621 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar hook-associated protein 2 domain-containing protein YP_002436037.1 1998119 D 883 CDS YP_002436038.1 218886717 7173536 complement(2000204..2001091) 1 NC_011769.1 PFAM: flagellin domain protein; KEGG: dde:Dde_1502 flagellin; flagellin domain-containing protein 2001091 7173536 DvMF_1622 Desulfovibrio vulgaris str. 'Miyazaki F' flagellin domain-containing protein YP_002436038.1 2000204 R 883 CDS YP_002436039.1 218886718 7173537 complement(2001338..2001949) 1 NC_011769.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: rso:RSc2361 RNA polymerase sigma-E factor sigma-24 homolog transcription regulator protein; ECF subfamily RNA polymerase sigma-24 subunit 2001949 7173537 DvMF_1623 Desulfovibrio vulgaris str. 'Miyazaki F' ECF subfamily RNA polymerase sigma-24 subunit YP_002436039.1 2001338 R 883 CDS YP_002436040.1 218886719 7173538 2002236..2003072 1 NC_011769.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mca:MCA2279 DNA-binding response regulator; two component transcriptional regulator, winged helix family 2003072 7173538 DvMF_1624 Desulfovibrio vulgaris str. 'Miyazaki F' two component transcriptional regulator, winged helix family YP_002436040.1 2002236 D 883 CDS YP_002436041.1 218886720 7173539 2003053..2004765 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: scl:sce4827 hypothetical protein; integral membrane sensor signal transduction histidine kinase 2004765 7173539 DvMF_1625 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002436041.1 2003053 D 883 CDS YP_002436042.1 218886721 7173540 complement(2005035..2005523) 1 NC_011769.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: gbe:GbCGDNIH1_1190 hypothetical secreted protein; calcium-binding domain-containing protein 2005523 7173540 DvMF_1626 Desulfovibrio vulgaris str. 'Miyazaki F' calcium-binding domain-containing protein YP_002436042.1 2005035 R 883 CDS YP_002436043.1 218886722 7173541 complement(2005520..2007136) 1 NC_011769.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pca:Pcar_0814 outer membrane protein; NodT family RND efflux system outer membrane lipoprotein 2007136 7173541 DvMF_1627 Desulfovibrio vulgaris str. 'Miyazaki F' NodT family RND efflux system outer membrane lipoprotein YP_002436043.1 2005520 R 883 CDS YP_002436044.1 218886723 7173542 complement(2007133..2008284) 1 NC_011769.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: mca:MCA1810 hypothetical protein; RND family efflux transporter MFP subunit 2008284 7173542 DvMF_1628 Desulfovibrio vulgaris str. 'Miyazaki F' RND family efflux transporter MFP subunit YP_002436044.1 2007133 R 883 CDS YP_002436045.1 218886724 7173543 complement(2008369..2009316) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mca:MCA1809 ABC transporter ATP-binding protein; ABC transporter 2009316 7173543 DvMF_1629 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436045.1 2008369 R 883 CDS YP_002436046.1 218886725 7173544 complement(2009359..2010507) 1 NC_011769.1 PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease; hypothetical protein 2010507 7173544 DvMF_1630 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436046.1 2009359 R 883 CDS YP_002436047.1 218886726 7173545 2010857..2011684 1 NC_011769.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo2745 probable DNA-binding response regulator; two component transcriptional regulator, winged helix family 2011684 7173545 DvMF_1631 Desulfovibrio vulgaris str. 'Miyazaki F' two component transcriptional regulator, winged helix family YP_002436047.1 2010857 D 883 CDS YP_002436048.1 218886727 7173546 2011681..2013288 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: eba:ebA4466 histidine kinase-like ATPase; integral membrane sensor signal transduction histidine kinase 2013288 7173546 DvMF_1632 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002436048.1 2011681 D 883 CDS YP_002436049.1 218886728 7173547 2013655..2015985 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 2015985 7173547 DvMF_1633 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_002436049.1 2013655 D 883 CDS YP_002436050.1 218886729 7173548 2016313..2016570 1 NC_011769.1 KEGG: bav:BAV1312A phage protein; phage protein 2016570 7173548 DvMF_1634 Desulfovibrio vulgaris str. 'Miyazaki F' phage protein YP_002436050.1 2016313 D 883 CDS YP_002436051.1 218886730 7173549 2016554..2016892 1 NC_011769.1 PFAM: helix-turn-helix domain protein; KEGG: bav:BAV1312 phage DNA-binding protein; XRE family transcriptional regulator 2016892 7173549 DvMF_1635 Desulfovibrio vulgaris str. 'Miyazaki F' XRE family transcriptional regulator YP_002436051.1 2016554 D 883 CDS YP_002436052.1 218886731 7173550 complement(2016944..2017444) 1 NC_011769.1 KEGG: nmu:Nmul_A1447 hypothetical protein; hypothetical protein 2017444 7173550 DvMF_1636 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436052.1 2016944 R 883 CDS YP_002436053.1 218886732 7173551 complement(2017448..2017771) 1 NC_011769.1 KEGG: nmu:Nmul_A1448 hypothetical protein; hypothetical protein 2017771 7173551 DvMF_1637 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436053.1 2017448 R 883 CDS YP_002436054.1 218886733 7173552 complement(2017774..2018379) 1 NC_011769.1 KEGG: nmu:Nmul_A1449 hypothetical protein; hypothetical protein 2018379 7173552 DvMF_1638 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436054.1 2017774 R 883 CDS YP_002436055.1 218886734 7173553 complement(2018379..2021135) 1 NC_011769.1 KEGG: mag:amb0395 hypothetical protein; Phage-related protein tail component-like protein 2021135 7173553 DvMF_1639 Desulfovibrio vulgaris str. 'Miyazaki F' Phage-related protein tail component-like protein YP_002436055.1 2018379 R 883 CDS YP_002436056.1 218886735 7173554 complement(2021174..2021533) 1 NC_011769.1 KEGG: sfu:Sfum_1892 hypothetical protein; hypothetical protein 2021533 7173554 DvMF_1640 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436056.1 2021174 R 883 CDS YP_002436057.1 218886736 7173555 complement(2021613..2022518) 1 NC_011769.1 KEGG: sfu:Sfum_1891 phage-related protein-like; hypothetical protein 2022518 7173555 DvMF_1641 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436057.1 2021613 R 883 CDS YP_002436058.1 218886737 7173556 complement(2022521..2022874) 1 NC_011769.1 hypothetical protein 2022874 7173556 DvMF_1642 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436058.1 2022521 R 883 CDS YP_002436059.1 218886738 7173557 complement(2022877..2025693) 1 NC_011769.1 TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein; phage tape measure protein 2025693 7173557 DvMF_1643 Desulfovibrio vulgaris str. 'Miyazaki F' phage tape measure protein YP_002436059.1 2022877 R 883 CDS YP_002436060.1 218886739 7173558 2025799..2026587 1 NC_011769.1 KEGG: pfl:PFL_3748 hypothetical protein; hypothetical protein 2026587 7173558 DvMF_1644 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436060.1 2025799 D 883 CDS YP_002436061.1 218886740 7173559 2026839..2027723 1 NC_011769.1 PFAM: BRO domain protein; KEGG: vco:VC0395_1058 BRO family, N-domain protein; prophage antirepressor 2027723 7173559 DvMF_1645 Desulfovibrio vulgaris str. 'Miyazaki F' prophage antirepressor YP_002436061.1 2026839 D 883 CDS YP_002436062.1 218886741 7173560 2027973..2028872 1 NC_011769.1 KEGG: spz:M5005_Spy_1051 phage protein; phage protein 2028872 7173560 DvMF_1646 Desulfovibrio vulgaris str. 'Miyazaki F' phage protein YP_002436062.1 2027973 D 883 CDS YP_002436063.1 218886742 7173562 complement(2029152..2029499) 1 NC_011769.1 KEGG: hch:HCH_04547 hypothetical protein; hypothetical protein 2029499 7173562 DvMF_1648 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436063.1 2029152 R 883 CDS YP_002436064.1 218886743 7173563 complement(2029510..2029929) 1 NC_011769.1 KEGG: bph:Bphy_7150 hypothetical protein; hypothetical protein 2029929 7173563 DvMF_1649 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436064.1 2029510 R 883 CDS YP_002436065.1 218886744 7173564 complement(2029945..2030313) 1 NC_011769.1 KEGG: rsh:Rsph17029_3324 hypothetical protein; hypothetical protein 2030313 7173564 DvMF_1650 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436065.1 2029945 R 883 CDS YP_002436066.1 218886745 7173565 complement(2030300..2030698) 1 NC_011769.1 hypothetical protein 2030698 7173565 DvMF_1651 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436066.1 2030300 R 883 CDS YP_002436067.1 218886746 7173566 complement(2030698..2031012) 1 NC_011769.1 TIGRFAM: phage head-tail adaptor; PFAM: head-tail adaptor protein; KEGG: asu:Asuc_1242 phage head-tail adaptor; phage head-tail adaptor 2031012 7173566 DvMF_1652 Desulfovibrio vulgaris str. 'Miyazaki F' phage head-tail adaptor YP_002436067.1 2030698 R 883 CDS YP_002436068.1 218886747 7173567 complement(2031015..2031599) 1 NC_011769.1 KEGG: pla:Plav_0908 phage conserved hypothetical protein, phiE125 gp8; phage conserved hypothetical protein, phiE125 gp8 2031599 7173567 DvMF_1653 Desulfovibrio vulgaris str. 'Miyazaki F' phage conserved hypothetical protein, phiE125 gp8 YP_002436068.1 2031015 R 883 CDS YP_002436069.1 218886748 7173568 complement(2031596..2031775) 1 NC_011769.1 hypothetical protein 2031775 7173568 DvMF_1654 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436069.1 2031596 R 883 CDS YP_002436070.1 218886749 7173569 complement(2031821..2033041) 1 NC_011769.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: spq:SPAB_02163 hypothetical protein; phage major capsid protein, HK97 family 2033041 7173569 DvMF_1655 Desulfovibrio vulgaris str. 'Miyazaki F' phage major capsid protein, HK97 family YP_002436070.1 2031821 R 883 CDS YP_002436071.1 218886750 7173570 complement(2033054..2033755) 1 NC_011769.1 TIGRFAM: phage prohead protease HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: smd:Smed_1335 phage prohead protease HK97 family; phage prohead protease HK97 family 2033755 7173570 DvMF_1656 Desulfovibrio vulgaris str. 'Miyazaki F' phage prohead protease HK97 family YP_002436071.1 2033054 R 883 CDS YP_002436072.1 218886751 7173571 complement(2033742..2034968) 1 NC_011769.1 TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: smd:Smed_1336 phage portal protein, HK97 family; phage portal protein, HK97 family 2034968 7173571 DvMF_1657 Desulfovibrio vulgaris str. 'Miyazaki F' phage portal protein, HK97 family YP_002436072.1 2033742 R 883 CDS YP_002436073.1 218886752 7173572 complement(2034968..2036665) 1 NC_011769.1 PFAM: terminase; KEGG: bph:Bphy_7140 terminase; terminase 2036665 7173572 DvMF_1658 Desulfovibrio vulgaris str. 'Miyazaki F' terminase YP_002436073.1 2034968 R 883 CDS YP_002436074.1 218886753 7173573 complement(2036658..2037131) 1 NC_011769.1 KEGG: sew:SeSA_A4461 phage terminase, small subunit, P27 family; phage terminase small subunit 2037131 7173573 DvMF_1659 Desulfovibrio vulgaris str. 'Miyazaki F' phage terminase small subunit YP_002436074.1 2036658 R 883 CDS YP_002436075.1 218886754 7173574 complement(2037204..2037599) 1 NC_011769.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bpm:BURPS1710b_1677 GP70; HNH endonuclease 2037599 7173574 DvMF_1660 Desulfovibrio vulgaris str. 'Miyazaki F' HNH endonuclease YP_002436075.1 2037204 R 883 CDS YP_002436076.1 218886755 7173575 complement(2038125..2038472) 1 NC_011769.1 hypothetical protein 2038472 7173575 DvMF_1661 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436076.1 2038125 R 883 CDS YP_002436077.1 218886756 7173576 complement(2038454..2038684) 1 NC_011769.1 KEGG: hch:HCH_02889 hypothetical protein; hypothetical protein 2038684 7173576 DvMF_1662 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436077.1 2038454 R 883 CDS YP_002436078.1 218886757 7173577 complement(2038656..2039039) 1 NC_011769.1 KEGG: psp:PSPPH_1890 hypothetical protein; hypothetical protein 2039039 7173577 DvMF_1663 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436078.1 2038656 R 883 CDS YP_002436079.1 218886758 7173578 complement(2039042..2039449) 1 NC_011769.1 KEGG: mag:amb1193 hypothetical protein; hypothetical protein 2039449 7173578 DvMF_1664 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436079.1 2039042 R 883 CDS YP_002436080.1 218886759 7173580 complement(2039862..2040881) 1 NC_011769.1 PFAM: acyltransferase 3; KEGG: pat:Patl_1185 acyltransferase 3; acyltransferase 3 2040881 7173580 DvMF_1666 Desulfovibrio vulgaris str. 'Miyazaki F' acyltransferase 3 YP_002436080.1 2039862 R 883 CDS YP_002436081.1 218886760 7173581 complement(2041199..2041420) 1 NC_011769.1 hypothetical protein 2041420 7173581 DvMF_1667 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436081.1 2041199 R 883 CDS YP_002436082.1 218886761 7173582 2041542..2041820 1 NC_011769.1 PFAM: plasmid maintenance system killer; KEGG: mag:amb0661 plasmid maintenance system killer protein; plasmid maintenance system killer protein 2041820 7173582 DvMF_1668 Desulfovibrio vulgaris str. 'Miyazaki F' plasmid maintenance system killer protein YP_002436082.1 2041542 D 883 CDS YP_002436083.1 218886762 7173583 2041831..2042136 1 NC_011769.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: mag:amb0660 plasmid maintenance system antidote protein; XRE family transcriptional regulator 2042136 7173583 DvMF_1669 Desulfovibrio vulgaris str. 'Miyazaki F' XRE family transcriptional regulator YP_002436083.1 2041831 D 883 CDS YP_002436084.1 218886763 7173584 complement(2042145..2042438) 1 NC_011769.1 KEGG: smt:Smal_2507 hypothetical protein; hypothetical protein 2042438 7173584 DvMF_1670 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436084.1 2042145 R 883 CDS YP_002436085.1 218886764 7173585 complement(2042609..2043241) 1 NC_011769.1 hypothetical protein 2043241 7173585 DvMF_1671 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436085.1 2042609 R 883 CDS YP_002436086.1 218886765 7173586 complement(2043238..2044095) 1 NC_011769.1 KEGG: hmo:HM1_0053 hypothetical protein; hypothetical protein 2044095 7173586 DvMF_1672 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436086.1 2043238 R 883 CDS YP_002436087.1 218886766 7173587 complement(2045240..2045662) 1 NC_011769.1 KEGG: dde:Dde_1017 hypothetical protein; hypothetical protein 2045662 7173587 DvMF_1673 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436087.1 2045240 R 883 CDS YP_002436088.1 218886767 7173588 2045722..2045961 1 NC_011769.1 hypothetical protein 2045961 7173588 DvMF_1674 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436088.1 2045722 D 883 CDS YP_002436089.1 218886768 7173589 2046195..2046419 1 NC_011769.1 KEGG: eli:ELI_07875 hypothetical protein; hypothetical protein 2046419 7173589 DvMF_1675 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436089.1 2046195 D 883 CDS YP_002436090.1 218886769 7173590 2046529..2046957 1 NC_011769.1 KEGG: ath:AT1G01660 U-box domain-containing protein; hypothetical protein 2046957 7173590 DvMF_1676 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436090.1 2046529 D 883 CDS YP_002436091.1 218886770 7173591 complement(2046989..2047396) 1 NC_011769.1 hypothetical protein 2047396 7173591 DvMF_1677 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436091.1 2046989 R 883 CDS YP_002436092.1 218886771 7173592 2047780..2048514 1 NC_011769.1 PFAM: peptidase S24 and S26 domain protein; KEGG: mca:MCA2959 prophage MuMc02, S24 family peptidase; phage repressor 2048514 7173592 DvMF_1678 Desulfovibrio vulgaris str. 'Miyazaki F' phage repressor YP_002436092.1 2047780 D 883 CDS YP_002436093.1 218886772 7173593 2048623..2049342 1 NC_011769.1 hypothetical protein 2049342 7173593 DvMF_1679 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436093.1 2048623 D 883 CDS YP_002436094.1 218886773 7173594 2050039..2050185 1 NC_011769.1 hypothetical protein 2050185 7173594 DvMF_1680 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436094.1 2050039 D 883 CDS YP_002436095.1 218886774 7173595 2050188..2050478 1 NC_011769.1 hypothetical protein 2050478 7173595 DvMF_1681 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436095.1 2050188 D 883 CDS YP_002436096.1 218886775 7173596 2050535..2051584 1 NC_011769.1 KEGG: gsu:GSU2152 hypothetical protein; hypothetical protein 2051584 7173596 DvMF_1682 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436096.1 2050535 D 883 CDS YP_002436097.1 218886776 7173597 2051587..2052486 1 NC_011769.1 PFAM: protein of unknown function DUF1351; KEGG: cpy:Cphy_2989 hypothetical protein; hypothetical protein 2052486 7173597 DvMF_1683 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436097.1 2051587 D 883 CDS YP_002436098.1 218886777 7173598 2052503..2053411 1 NC_011769.1 KEGG: cel:K09A9.6 K09A9.6a; hypothetical protein 2053411 7173598 DvMF_1684 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436098.1 2052503 D 883 CDS YP_002436099.1 218886778 7173599 2053441..2053764 1 NC_011769.1 hypothetical protein 2053764 7173599 DvMF_1685 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436099.1 2053441 D 883 CDS YP_002436100.1 218886779 7173600 2053922..2054101 1 NC_011769.1 hypothetical protein 2054101 7173600 DvMF_1686 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436100.1 2053922 D 883 CDS YP_002436101.1 218886780 7173601 2054443..2055510 1 NC_011769.1 PFAM: integrase family protein; KEGG: dde:Dde_0620 hypothetical protein; integrase family protein 2055510 7173601 DvMF_1687 Desulfovibrio vulgaris str. 'Miyazaki F' integrase family protein YP_002436101.1 2054443 D 883 CDS YP_002436102.1 218886781 7173603 2055925..2057079 1 NC_011769.1 hypothetical protein 2057079 7173603 DvMF_1688 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436102.1 2055925 D 883 CDS YP_002436103.1 218886782 7173604 complement(2057395..2057658) 1 NC_011769.1 hypothetical protein 2057658 7173604 DvMF_1689 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436103.1 2057395 R 883 CDS YP_002436104.1 218886783 7173605 complement(2057686..2059362) 1 NC_011769.1 PFAM: polysaccharide export protein; KEGG: amc:MADE_03058 capsular polysaccharide transporter; polysaccharide export protein 2059362 7173605 DvMF_1690 Desulfovibrio vulgaris str. 'Miyazaki F' polysaccharide export protein YP_002436104.1 2057686 R 883 CDS YP_002436105.1 218886784 7173606 complement(2059590..2059991) 1 NC_011769.1 hypothetical protein 2059991 7173606 DvMF_1691 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436105.1 2059590 R 883 CDS YP_002436106.1 218886785 7173607 complement(2060288..2061853) 1 NC_011769.1 KEGG: dde:Dde_0659 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; ATPase AAA; Fis family transcriptional regulator 2061853 7173607 DvMF_1692 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436106.1 2060288 R 883 CDS YP_002436107.1 218886786 7173608 2062308..2064083 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0657 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 2064083 7173608 DvMF_1693 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002436107.1 2062308 D 883 CDS YP_002436108.1 218886787 7173609 2064128..2065822 1 NC_011769.1 KEGG: sfu:Sfum_0090 cytochrome C family protein; cytochrome C family protein 2065822 7173609 DvMF_1694 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C family protein YP_002436108.1 2064128 D 883 CDS YP_002436109.1 218886788 7173610 2065825..2066454 1 NC_011769.1 PFAM: cytochrome B561; KEGG: dol:Dole_3004 cytochrome b561; cytochrome B561 2066454 7173610 DvMF_1695 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome B561 YP_002436109.1 2065825 D 883 CDS YP_002436110.1 218886789 7173611 complement(2066887..2068095) 1 NC_011769.1 PFAM: phosphoglycerate mutase; 6-phosphofructo-2-kinase; KEGG: dde:Dde_0511 6-phosphofructo-2-kinase; phosphoglycerate mutase 2068095 7173611 DvMF_1696 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoglycerate mutase YP_002436110.1 2066887 R 883 CDS YP_002436111.1 218886790 7173612 2068559..2068888 1 NC_011769.1 KEGG: scl:sce6981 conserved carbohydrate-binding protein, rhs family; hypothetical protein 2068888 7173612 DvMF_1697 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436111.1 2068559 D 883 CDS YP_002436112.1 218886791 7173613 complement(2069192..2072083) 1 NC_011769.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hemerythrin HHE cation binding domain protein; KEGG: dde:Dde_2814 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2072083 7173613 DvMF_1698 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002436112.1 2069192 R 883 CDS YP_002436113.1 218886792 7173614 complement(2072403..2073062) 1 NC_011769.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 2073062 7173614 DvMF_1699 Desulfovibrio vulgaris str. 'Miyazaki F' deoxyribonucleotide triphosphate pyrophosphatase YP_002436113.1 2072403 R 883 CDS YP_002436114.1 218886793 7173615 complement(2073272..2075047) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0505 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 2075047 7173615 DvMF_1700 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor signal transduction histidine kinase YP_002436114.1 2073272 R 883 CDS YP_002436115.1 218886794 7173616 2075361..2076746 1 NC_011769.1 KEGG: dde:Dde_0506 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: radical SAM protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 2076746 7173616 DvMF_1701 Desulfovibrio vulgaris str. 'Miyazaki F' MiaB-like tRNA modifying enzyme YliG YP_002436115.1 2075361 D 883 CDS YP_002436116.1 218886795 7173617 2077042..2078775 1 NC_011769.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2078775 rpsA 7173617 rpsA Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S1 YP_002436116.1 2077042 D 883 CDS YP_002436117.1 218886796 7173618 2078759..2079652 1 NC_011769.1 KEGG: dde:Dde_0508 signal peptide peptidase A; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type 2079652 7173618 DvMF_1703 Desulfovibrio vulgaris str. 'Miyazaki F' signal peptide peptidase SppA, 36K type YP_002436117.1 2078759 D 883 CDS YP_002436118.1 218886797 7173619 2079760..2080707 1 NC_011769.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cak:Caul_3208 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2080707 7173619 DvMF_1704 Desulfovibrio vulgaris str. 'Miyazaki F' N-acetyltransferase GCN5 YP_002436118.1 2079760 D 883 CDS YP_002436119.1 218886798 7173620 2081060..2082598 1 NC_011769.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 2082598 7173620 DvMF_1705 Desulfovibrio vulgaris str. 'Miyazaki F' 4-alpha-glucanotransferase YP_002436119.1 2081060 D 883 CDS YP_002436120.1 218886799 7173621 2082972..2084795 1 NC_011769.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: dde:Dde_0502 glutamine--fructose-6-phosphate transaminase; glucosamine/fructose-6-phosphate aminotransferase 2084795 7173621 DvMF_1706 Desulfovibrio vulgaris str. 'Miyazaki F' glucosamine/fructose-6-phosphate aminotransferase YP_002436120.1 2082972 D 883 CDS YP_002436121.1 218886800 7173622 complement(2085102..2086616) 1 NC_011769.1 PFAM: protein of unknown function UPF0118; KEGG: dde:Dde_2448 hypothetical protein; hypothetical protein 2086616 7173622 DvMF_1707 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436121.1 2085102 R 883 CDS YP_002436122.1 218886801 7173623 complement(2086678..2087367) 1 NC_011769.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: stp:Strop_3269 CRP/FNR family transcriptional regulator; Crp/Fnr family transcriptional regulator 2087367 7173623 DvMF_1708 Desulfovibrio vulgaris str. 'Miyazaki F' Crp/Fnr family transcriptional regulator YP_002436122.1 2086678 R 883 CDS YP_002436123.1 218886802 7173624 complement(2087473..2087829) 1 NC_011769.1 KEGG: dau:Daud_0789 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2087829 7173624 DvMF_1709 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002436123.1 2087473 R 883 CDS YP_002436124.1 218886803 7173625 complement(2087857..2089641) 1 NC_011769.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dau:Daud_0788 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2089641 7173625 DvMF_1710 Desulfovibrio vulgaris str. 'Miyazaki F' fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_002436124.1 2087857 R 883 CDS YP_002436125.1 218886804 7173626 complement(2089958..2091022) 1 NC_011769.1 PFAM: protein of unknown function DUF81; KEGG: sit:TM1040_3098 protein of unknown function DUF81; hypothetical protein 2091022 7173626 DvMF_1711 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436125.1 2089958 R 883 CDS YP_002436126.1 218886805 7173627 2091451..2091708 1 NC_011769.1 KEGG: dde:Dde_3449 hypothetical protein; hypothetical protein 2091708 7173627 DvMF_1712 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436126.1 2091451 D 883 CDS YP_002436127.1 218886806 7173628 2092102..2094720 1 NC_011769.1 KEGG: dde:Dde_3450 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I 2094720 7173628 DvMF_1713 Desulfovibrio vulgaris str. 'Miyazaki F' DNA polymerase I YP_002436127.1 2092102 D 883 CDS YP_002436128.1 218886807 7173629 2094975..2096189 1 NC_011769.1 PFAM: protein of unknown function Met10; SMART: PUA domain containing protein; KEGG: dde:Dde_3451 SAM-dependent methyltransferase; hypothetical protein 2096189 7173629 DvMF_1714 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436128.1 2094975 D 883 CDS YP_002436129.1 218886808 7173630 2096207..2097376 1 NC_011769.1 PFAM: aminotransferase class V; KEGG: dde:Dde_3452 aminotransferase, class V; class V aminotransferase 2097376 7173630 DvMF_1715 Desulfovibrio vulgaris str. 'Miyazaki F' class V aminotransferase YP_002436129.1 2096207 D 883 CDS YP_002436130.1 218886809 7173631 2097394..2097717 1 NC_011769.1 PFAM: Domain of unknown function DUF1844; KEGG: dde:Dde_3453 hypothetical protein; hypothetical protein 2097717 7173631 DvMF_1716 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436130.1 2097394 D 883 CDS YP_002436131.1 218886810 7173632 2097794..2098846 1 NC_011769.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 2098846 argC 7173632 argC Desulfovibrio vulgaris str. 'Miyazaki F' N-acetyl-gamma-glutamyl-phosphate reductase YP_002436131.1 2097794 D 883 CDS YP_002436132.1 218886811 7173633 2099117..2101108 1 NC_011769.1 PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_3074 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2101108 7173633 DvMF_1718 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002436132.1 2099117 D 883 CDS YP_002436133.1 218886812 7173634 complement(2101478..2102686) 1 NC_011769.1 KEGG: dde:Dde_3456 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2102686 7173634 DvMF_1719 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002436133.1 2101478 R 883 CDS YP_002436134.1 218886813 7173635 2103157..2104395 1 NC_011769.1 PFAM: EAL domain protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2343 diguanylate phosphodiesterase; diguanylate phosphodiesterase 2104395 7173635 DvMF_1720 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate phosphodiesterase YP_002436134.1 2103157 D 883 CDS YP_002436135.1 218886814 7173636 complement(2104713..2106008) 1 NC_011769.1 KEGG: dde:Dde_3457 phenylacetate-CoA ligase; phenylacetate--CoA ligase 2106008 7173636 DvMF_1721 Desulfovibrio vulgaris str. 'Miyazaki F' phenylacetate--CoA ligase YP_002436135.1 2104713 R 883 CDS YP_002436136.1 218886815 7173637 2106509..2107786 1 NC_011769.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 2107786 7173637 DvMF_1722 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosylamine--glycine ligase YP_002436136.1 2106509 D 883 CDS YP_002436137.1 218886816 7173638 2108056..2108556 1 NC_011769.1 KEGG: dde:Dde_3459 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 2108556 7173638 DvMF_1723 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosylaminoimidazole carboxylase catalytic subunit YP_002436137.1 2108056 D 883 CDS YP_002436138.1 218886817 7173640 2108877..2109284 1 NC_011769.1 PFAM: protein of unknown function UPF0150; KEGG: bpa:BPP2077 hypothetical protein; hypothetical protein 2109284 7173640 DvMF_1725 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436138.1 2108877 D 883 CDS YP_002436139.1 218886818 7173641 complement(2109654..2109977) 1 NC_011769.1 KEGG: dde:Dde_3460 hypothetical protein; hypothetical protein 2109977 7173641 DvMF_1726 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436139.1 2109654 R 883 CDS YP_002436140.1 218886819 7173642 complement(2110150..2110947) 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: dde:Dde_3461 hypothetical protein; hypothetical protein 2110947 7173642 DvMF_1727 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436140.1 2110150 R 883 CDS YP_002436141.1 218886820 7173643 complement(2110944..2111777) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cte:CT1092 ABC transporter ATP-binding protein; ABC transporter 2111777 7173643 DvMF_1728 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436141.1 2110944 R 883 CDS YP_002436142.1 218886821 7173644 2112107..2114398 1 NC_011769.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: dde:Dde_3464 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 2114398 7173644 DvMF_1729 Desulfovibrio vulgaris str. 'Miyazaki F' DNA mismatch repair protein MutL YP_002436142.1 2112107 D 883 CDS YP_002436143.1 218886822 7173645 2114641..2116164 1 NC_011769.1 KEGG: dde:Dde_3465 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 2116164 7173645 DvMF_1730 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002436143.1 2114641 D 883 CDS YP_002436144.1 218886823 7173646 2116495..2116899 1 NC_011769.1 PFAM: cytochrome C class III; KEGG: dde:Dde_3754 cytochrome C3; cytochrome C class III 2116899 7173646 DvMF_1731 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C class III YP_002436144.1 2116495 D 883 CDS YP_002436145.1 218886824 7173647 2116896..2117864 1 NC_011769.1 KEGG: dde:Dde_3755 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 2117864 7173647 DvMF_1732 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase (NiFe) small subunit HydA YP_002436145.1 2116896 D 883 CDS YP_002436146.1 218886825 7173648 2117876..2119525 1 NC_011769.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_3756 periplasmic (NiFe) hydrogenase, large subunit, isozyme 2; nickel-dependent hydrogenase large subunit 2119525 7173648 DvMF_1733 Desulfovibrio vulgaris str. 'Miyazaki F' nickel-dependent hydrogenase large subunit YP_002436146.1 2117876 D 883 CDS YP_002436147.1 218886826 7173649 complement(2119670..2120653) 1 NC_011769.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_3466 ADP-glyceromanno-heptose 6-epimerase precursor; ADP-L-glycero-D-manno-heptose-6-epimerase 2120653 7173649 DvMF_1734 Desulfovibrio vulgaris str. 'Miyazaki F' ADP-L-glycero-D-manno-heptose-6-epimerase YP_002436147.1 2119670 R 883 CDS YP_002436148.1 218886827 7173650 complement(2120778..2121752) 1 NC_011769.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3467 hypothetical protein; hypothetical protein 2121752 7173650 DvMF_1735 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436148.1 2120778 R 883 CDS YP_002436149.1 218886828 7173651 complement(2122006..2123967) 1 NC_011769.1 PFAM: tyrosine protein kinase; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: dde:Dde_3468 serine/threonine protein kinase; serine/threonine protein kinase 2123967 7173651 DvMF_1736 Desulfovibrio vulgaris str. 'Miyazaki F' serine/threonine protein kinase YP_002436149.1 2122006 R 883 CDS YP_002436150.1 218886829 7173652 complement(2124207..2124935) 1 NC_011769.1 PFAM: metallophosphoesterase; KEGG: dde:Dde_3469 serine/threonine protein phosphatase family protein; metallophosphoesterase 2124935 7173652 DvMF_1737 Desulfovibrio vulgaris str. 'Miyazaki F' metallophosphoesterase YP_002436150.1 2124207 R 883 CDS YP_002436151.1 218886830 7173653 complement(2125052..2125678) 1 NC_011769.1 KEGG: tcr:507957.200 mucin-associated surface protein (MASP), Pfam: Prosystemin PROSITE: ALA_RICH; hypothetical protein 2125678 7173653 DvMF_1738 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436151.1 2125052 R 883 CDS YP_002436152.1 218886831 7173654 complement(2125994..2127142) 1 NC_011769.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dde:Dde_3476 isocitrate dehydrogenase (NADP); isocitrate/isopropylmalate dehydrogenase 2127142 7173654 DvMF_1739 Desulfovibrio vulgaris str. 'Miyazaki F' isocitrate/isopropylmalate dehydrogenase YP_002436152.1 2125994 R 883 CDS YP_002436153.1 218886832 7173655 complement(2127525..2128337) 1 NC_011769.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2128337 trpA 7173655 trpA Desulfovibrio vulgaris str. 'Miyazaki F' tryptophan synthase subunit alpha YP_002436153.1 2127525 R 883 CDS YP_002436154.1 218886833 7173656 complement(2128334..2129518) 1 NC_011769.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2129518 7173656 DvMF_1741 Desulfovibrio vulgaris str. 'Miyazaki F' tryptophan synthase subunit beta YP_002436154.1 2128334 R 883 CDS YP_002436155.1 218886834 7173657 complement(2129558..2130235) 1 NC_011769.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dde:Dde_3480 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase 2130235 7173657 DvMF_1742 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosylanthranilate isomerase YP_002436155.1 2129558 R 883 CDS YP_002436156.1 218886835 7173658 complement(2130232..2131197) 1 NC_011769.1 PFAM: indole-3-glycerol phosphate synthase; KEGG: amu:Amuc_1533 indole-3-glycerol-phosphate synthase; indole-3-glycerol-phosphate synthase 2131197 7173658 DvMF_1743 Desulfovibrio vulgaris str. 'Miyazaki F' indole-3-glycerol-phosphate synthase YP_002436156.1 2130232 R 883 CDS YP_002436157.1 218886836 7173659 complement(2131190..2132206) 1 NC_011769.1 KEGG: amu:Amuc_1532 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase 2132206 7173659 DvMF_1744 Desulfovibrio vulgaris str. 'Miyazaki F' anthranilate phosphoribosyltransferase YP_002436157.1 2131190 R 883 CDS YP_002436158.1 218886837 7173660 complement(2132402..2132980) 1 NC_011769.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: amu:Amuc_1532 anthranilate phosphoribosyltransferase; glutamine amidotransferase 2132980 7173660 DvMF_1745 Desulfovibrio vulgaris str. 'Miyazaki F' glutamine amidotransferase YP_002436158.1 2132402 R 883 CDS YP_002436159.1 218886838 7173661 complement(2132961..2134523) 1 NC_011769.1 PFAM: anthranilate synthase component I domain protein; chorismate binding-like; KEGG: dde:Dde_3484 anthranilate synthase, component I; anthranilate synthase 2134523 7173661 DvMF_1746 Desulfovibrio vulgaris str. 'Miyazaki F' anthranilate synthase YP_002436159.1 2132961 R 883 CDS YP_002436160.1 218886839 7173662 complement(2134644..2135435) 1 NC_011769.1 PFAM: prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; KEGG: dde:Dde_3485 prephenate dehydrogenase; prephenate dehydrogenase 2135435 7173662 DvMF_1747 Desulfovibrio vulgaris str. 'Miyazaki F' prephenate dehydrogenase YP_002436160.1 2134644 R 883 CDS YP_002436161.1 218886840 7173663 complement(2135432..2136784) 1 NC_011769.1 KEGG: dde:Dde_3486 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase 2136784 7173663 DvMF_1748 Desulfovibrio vulgaris str. 'Miyazaki F' 3-phosphoshikimate 1-carboxyvinyltransferase YP_002436161.1 2135432 R 883 CDS YP_002436162.1 218886841 7173664 complement(2137049..2138305) 1 NC_011769.1 PFAM: prephenate dehydratase; chorismate mutase; amino acid-binding ACT domain protein; KEGG: dde:Dde_3487 prephenate dehydratase; prephenate dehydratase 2138305 7173664 DvMF_1749 Desulfovibrio vulgaris str. 'Miyazaki F' prephenate dehydratase YP_002436162.1 2137049 R 883 CDS YP_002436163.1 218886842 7173665 complement(2138340..2139311) 1 NC_011769.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate; 3-dehydroquinate synthase 2139311 7173665 DvMF_1750 Desulfovibrio vulgaris str. 'Miyazaki F' 3-dehydroquinate synthase YP_002436163.1 2138340 R 883 CDS YP_002436164.1 218886843 7173666 complement(2139616..2140413) 1 NC_011769.1 catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate; fructose-bisphosphate aldolase 2140413 7173666 DvMF_1751 Desulfovibrio vulgaris str. 'Miyazaki F' fructose-bisphosphate aldolase YP_002436164.1 2139616 R 883 CDS YP_002436165.1 218886844 7173667 complement(2140717..2140821) 1 NC_011769.1 hypothetical protein 2140821 7173667 DvMF_1752 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436165.1 2140717 R 883 CDS YP_002436166.1 218886845 7173668 2141275..2141832 1 NC_011769.1 KEGG: cre:CHLREDRAFT_149776 hypothetical protein Pfam: Extensin_2 PROSITE: IG_MHC ALA_RICH; hypothetical protein 2141832 7173668 DvMF_1753 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436166.1 2141275 D 883 CDS YP_002436167.1 218886846 7173669 2141973..2143268 1 NC_011769.1 PFAM: EAL domain protein; KEGG: pth:PTH_0666 hypothetical signaling protein; diguanylate phosphodiesterase 2143268 7173669 DvMF_1754 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate phosphodiesterase YP_002436167.1 2141973 D 883 CDS YP_002436168.1 218886847 7173670 complement(2143703..2144965) 1 NC_011769.1 PFAM: phosphoesterase RecJ domain protein; KEGG: dde:Dde_3494 DHH family protein; phosphoesterase RecJ domain-containing protein 2144965 7173670 DvMF_1755 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoesterase RecJ domain-containing protein YP_002436168.1 2143703 R 883 CDS YP_002436169.1 218886848 7173671 complement(2145131..2145946) 1 NC_011769.1 KEGG: dde:Dde_3496 hypothetical protein; hypothetical protein 2145946 7173671 DvMF_1756 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436169.1 2145131 R 883 CDS YP_002436170.1 218886849 7173672 2146199..2146348 1 NC_011769.1 KEGG: dde:Dde_3498 hypothetical protein; hypothetical protein 2146348 7173672 DvMF_1757 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436170.1 2146199 D 883 CDS YP_002436171.1 218886850 7173673 complement(2146637..2150371) 1 NC_011769.1 PFAM: UvrD/REP helicase; KEGG: dde:Dde_3499 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 2150371 7173673 DvMF_1758 Desulfovibrio vulgaris str. 'Miyazaki F' UvrD/REP helicase YP_002436171.1 2146637 R 883 CDS YP_002436172.1 218886851 7173674 2150588..2151784 1 NC_011769.1 KEGG: dde:Dde_3501 hypothetical protein; hypothetical protein 2151784 7173674 DvMF_1759 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436172.1 2150588 D 883 CDS YP_002436173.1 218886852 7173675 2151914..2155576 1 NC_011769.1 KEGG: zmo:ZMO0695 hypothetical protein; hypothetical protein 2155576 7173675 DvMF_1760 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436173.1 2151914 D 883 CDS YP_002436174.1 218886853 7173676 complement(2155594..2157411) 1 NC_011769.1 PFAM: CBS domain containing protein; chloride channel core; KEGG: dde:Dde_3504 chloride channel family protein; chloride channel core 2157411 7173676 DvMF_1761 Desulfovibrio vulgaris str. 'Miyazaki F' chloride channel core YP_002436174.1 2155594 R 883 CDS YP_002436175.1 218886854 7173677 complement(2157797..2158741) 1 NC_011769.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; riboflavin kinase; KEGG: dde:Dde_3505 riboflavin kinase / FMN adenylyltransferase; riboflavin biosynthesis protein RibF 2158741 7173677 DvMF_1762 Desulfovibrio vulgaris str. 'Miyazaki F' riboflavin biosynthesis protein RibF YP_002436175.1 2157797 R 883 CDS YP_002436176.1 218886855 7173679 complement(2159518..2160684) 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: ade:Adeh_2651 two component, sigma54 specific, transcriptional regulator, fis family; Fis family transcriptional regulator 2160684 7173679 DvMF_1763 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436176.1 2159518 R 883 CDS YP_002436177.1 218886856 7173680 2160934..2161911 1 NC_011769.1 PFAM: protein of unknown function DUF81; KEGG: afu:AF1561 hypothetical protein; hypothetical protein 2161911 7173680 DvMF_1764 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436177.1 2160934 D 883 CDS YP_002436178.1 218886857 7173681 2161936..2162355 1 NC_011769.1 KEGG: afu:AF1562 hypothetical protein; hypothetical protein 2162355 7173681 DvMF_1765 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436178.1 2161936 D 883 CDS YP_002436179.1 218886858 7173682 2162420..2164123 1 NC_011769.1 KEGG: dde:Dde_0318 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; hypothetical protein; SMART: AAA ATPase; Fis family transcriptional regulator 2164123 7173682 DvMF_1766 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436179.1 2162420 D 883 CDS YP_002436180.1 218886859 7173683 2164125..2164472 1 NC_011769.1 KEGG: dde:Dde_0319 hypothetical protein; hypothetical protein 2164472 7173683 DvMF_1767 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436180.1 2164125 D 883 CDS YP_002436181.1 218886860 7173684 2164469..2166199 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2166199 7173684 DvMF_1768 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002436181.1 2164469 D 883 CDS YP_002436182.1 218886861 7173685 2166202..2166591 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_0321 response regulator receiver domain-containing protein; response regulator receiver protein 2166591 7173685 DvMF_1769 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436182.1 2166202 D 883 CDS YP_002436183.1 218886862 7173686 2166664..2167398 1 NC_011769.1 KEGG: sfu:Sfum_0655 hypothetical protein; hypothetical protein 2167398 7173686 DvMF_1770 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436183.1 2166664 D 883 CDS YP_002436184.1 218886863 7173687 2167524..2167814 1 NC_011769.1 hypothetical protein 2167814 7173687 DvMF_1771 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436184.1 2167524 D 883 CDS YP_002436185.1 218886864 7173688 2167901..2168356 1 NC_011769.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0654 response regulator receiver protein; response regulator receiver protein 2168356 7173688 DvMF_1772 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436185.1 2167901 D 883 CDS YP_002436186.1 218886865 7173689 2168456..2169682 1 NC_011769.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1360 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 2169682 7173689 DvMF_1773 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver sensor signal transduction histidine kinase YP_002436186.1 2168456 D 883 CDS YP_002436187.1 218886866 7173690 complement(2169795..2170553) 1 NC_011769.1 KEGG: psp:PSPPH_2344 lipoprotein; hypothetical protein 2170553 7173690 DvMF_1774 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436187.1 2169795 R 883 CDS YP_002436188.1 218886867 7173691 complement(2171029..2173032) 1 NC_011769.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_3207 acetyl-coenzyme A synthetase; acetate/CoA ligase 2173032 7173691 DvMF_1775 Desulfovibrio vulgaris str. 'Miyazaki F' acetate/CoA ligase YP_002436188.1 2171029 R 883 CDS YP_002436189.1 218886868 7173692 2173448..2176144 1 NC_011769.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: dde:Dde_3208 acetyltransferase; N-acetyltransferase GCN5 2176144 7173692 DvMF_1776 Desulfovibrio vulgaris str. 'Miyazaki F' N-acetyltransferase GCN5 YP_002436189.1 2173448 D 883 CDS YP_002436190.1 218886869 7173693 2176242..2177597 1 NC_011769.1 KEGG: psp:PSPPH_4979 prophage PSPPH06, reverse transcriptase/maturase; prophage PSPPH06, reverse transcriptase/maturase 2177597 7173693 DvMF_1777 Desulfovibrio vulgaris str. 'Miyazaki F' prophage PSPPH06, reverse transcriptase/maturase YP_002436190.1 2176242 D 883 CDS YP_002436191.1 218886870 7173694 2177729..2178382 1 NC_011769.1 hypothetical protein 2178382 7173694 DvMF_1778 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436191.1 2177729 D 883 CDS YP_002436192.1 218886871 7173695 2178449..2178697 1 NC_011769.1 KEGG: pph:Ppha_2830 helix-turn-helix protein, CopG family; CopG family transcriptional regulator 2178697 7173695 DvMF_1779 Desulfovibrio vulgaris str. 'Miyazaki F' CopG family transcriptional regulator YP_002436192.1 2178449 D 883 CDS YP_002436193.1 218886872 7173696 complement(2178903..2180585) 1 NC_011769.1 PFAM: aldehyde dehydrogenase_; KEGG: sfu:Sfum_1087 aldehyde dehydrogenase; aldehyde dehydrogenase 2180585 7173696 DvMF_1780 Desulfovibrio vulgaris str. 'Miyazaki F' aldehyde dehydrogenase YP_002436193.1 2178903 R 883 CDS YP_002436194.1 218886873 7173697 complement(2181199..2182047) 1 NC_011769.1 PFAM: glycosyl transferase family 8; KEGG: cre:CHLREDRAFT_186791 hypothetical protein Pfam: Cu-oxidase_3 DUF246 glyco_transf_8; glycosyl transferase family protein 2182047 7173697 DvMF_1781 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002436194.1 2181199 R 883 CDS YP_002436195.1 218886874 7173698 complement(2182252..2182956) 1 NC_011769.1 stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: dde:Dde_3212 CheD, stimulates methylation of MCP proteins; chemotaxis protein CheD 2182956 7173698 DvMF_1782 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheD YP_002436195.1 2182252 R 883 CDS YP_002436196.1 218886875 7173699 complement(2183193..2183468) 1 NC_011769.1 PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_3213 histone-like DNA-binding protein; histone family protein DNA-binding protein 2183468 7173699 DvMF_1783 Desulfovibrio vulgaris str. 'Miyazaki F' histone family protein DNA-binding protein YP_002436196.1 2183193 R 883 CDS YP_002436197.1 218886876 7173700 complement(2183779..2184876) 1 NC_011769.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: lip:LI0082 unknown conserved protein; membrane-bound metal-dependent hydrolase 2184876 7173700 DvMF_1784 Desulfovibrio vulgaris str. 'Miyazaki F' membrane-bound metal-dependent hydrolase YP_002436197.1 2183779 R 883 CDS YP_002436198.1 218886877 7173702 complement(2185751..2186758) 1 NC_011769.1 PFAM: protein of unknown function DUF523; protein of unknown function DUF1722; KEGG: dde:Dde_3214 hypothetical protein; hypothetical protein 2186758 7173702 DvMF_1786 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436198.1 2185751 R 883 CDS YP_002436199.1 218886878 7173703 2186983..2187639 1 NC_011769.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_3215 HAD superfamily hydrolase; haloacid dehalogenase 2187639 7173703 DvMF_1787 Desulfovibrio vulgaris str. 'Miyazaki F' haloacid dehalogenase YP_002436199.1 2186983 D 883 CDS YP_002436200.1 218886879 7173704 2188081..2189025 1 NC_011769.1 PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein; hypothetical protein 2189025 7173704 DvMF_1788 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436200.1 2188081 D 883 CDS YP_002436201.1 218886880 7173705 2189202..2189846 1 NC_011769.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 2189846 7173705 DvMF_1789 Desulfovibrio vulgaris str. 'Miyazaki F' phosphatidylserine decarboxylase YP_002436201.1 2189202 D 883 CDS YP_002436202.1 218886881 7173706 2189904..2190653 1 NC_011769.1 TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dde:Dde_3217 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 2190653 7173706 DvMF_1790 Desulfovibrio vulgaris str. 'Miyazaki F' CDP-diacylglycerol/serine O-phosphatidyltransferase YP_002436202.1 2189904 D 883 CDS YP_002436203.1 218886882 7173707 2190882..2192426 1 NC_011769.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2192426 7173707 DvMF_1791 Desulfovibrio vulgaris str. 'Miyazaki F' 2-isopropylmalate synthase YP_002436203.1 2190882 D 883 CDS YP_002436204.1 218886883 7173708 2192427..2193683 1 NC_011769.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 2193683 7173708 DvMF_1792 Desulfovibrio vulgaris str. 'Miyazaki F' 3-isopropylmalate dehydratase large subunit YP_002436204.1 2192427 D 883 CDS YP_002436205.1 218886884 7173709 2193737..2194228 1 NC_011769.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit 2194228 leuD 7173709 leuD Desulfovibrio vulgaris str. 'Miyazaki F' 3-isopropylmalate dehydratase small subunit YP_002436205.1 2193737 D 883 CDS YP_002436206.1 218886885 7173710 2194483..2195559 1 NC_011769.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2195559 7173710 DvMF_1794 Desulfovibrio vulgaris str. 'Miyazaki F' 3-isopropylmalate dehydrogenase YP_002436206.1 2194483 D 883 CDS YP_002436207.1 218886886 7173711 2195611..2195760 1 NC_011769.1 hypothetical protein 2195760 7173711 DvMF_1795 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436207.1 2195611 D 883 CDS YP_002436208.1 218886887 7173712 complement(2195830..2196576) 1 NC_011769.1 KEGG: rci:RRC189 hypothetical protein; hypothetical protein 2196576 7173712 DvMF_1796 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436208.1 2195830 R 883 CDS YP_002436209.1 218886888 7173713 complement(2196700..2198667) 1 NC_011769.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dde:Dde_3228 molybdopterin binding domain-containing protein; molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein 2198667 7173713 DvMF_1797 Desulfovibrio vulgaris str. 'Miyazaki F' molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein YP_002436209.1 2196700 R 883 CDS YP_002436210.1 218886889 7173714 complement(2198737..2200041) 1 NC_011769.1 KEGG: dde:Dde_3227 Fis family transcriptional regulator; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; Fis family transcriptional regulator 2200041 7173714 DvMF_1798 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436210.1 2198737 R 883 CDS YP_002436211.1 218886890 7173715 2200230..2200961 1 NC_011769.1 TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: dde:Dde_3226 phage shock protein A; phage shock protein A, PspA 2200961 7173715 DvMF_1799 Desulfovibrio vulgaris str. 'Miyazaki F' phage shock protein A, PspA YP_002436211.1 2200230 D 883 CDS YP_002436212.1 218886891 7173716 2201281..2201604 1 NC_011769.1 TIGRFAM: phage shock protein B; KEGG: dde:Dde_3225 hypothetical protein; phage shock protein B 2201604 7173716 DvMF_1800 Desulfovibrio vulgaris str. 'Miyazaki F' phage shock protein B YP_002436212.1 2201281 D 883 CDS YP_002436213.1 218886892 7173717 2201607..2202188 1 NC_011769.1 TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: dde:Dde_3224 phage shock protein C; phage shock protein C 2202188 7173717 DvMF_1801 Desulfovibrio vulgaris str. 'Miyazaki F' phage shock protein C YP_002436213.1 2201607 D 883 CDS YP_002436214.1 218886893 7173718 complement(2202908..2204005) 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_3339 hypothetical protein; hypothetical protein 2204005 7173718 DvMF_1802 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436214.1 2202908 R 883 CDS YP_002436215.1 218886894 7173719 2204170..2204874 1 NC_011769.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_0306 hypothetical protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2204874 7173719 DvMF_1803 Desulfovibrio vulgaris str. 'Miyazaki F' alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_002436215.1 2204170 D 883 CDS YP_002436216.1 218886895 7173720 2204942..2205847 1 NC_011769.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: sat:SYN_00591 thioredoxin peroxidase; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2205847 7173720 DvMF_1804 Desulfovibrio vulgaris str. 'Miyazaki F' alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_002436216.1 2204942 D 883 CDS YP_002436217.1 218886896 7173721 2205877..2206491 1 NC_011769.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_0304 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2206491 7173721 DvMF_1805 Desulfovibrio vulgaris str. 'Miyazaki F' glyoxalase/bleomycin resistance protein/dioxygenase YP_002436217.1 2205877 D 883 CDS YP_002436218.1 218886897 7173722 2206890..2207291 1 NC_011769.1 KEGG: dde:Dde_0303 MucR family transcriptional regulator; MucR family transcriptional regulator 2207291 7173722 DvMF_1806 Desulfovibrio vulgaris str. 'Miyazaki F' MucR family transcriptional regulator YP_002436218.1 2206890 D 883 CDS YP_002436219.1 218886898 7173723 2207775..2208737 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0301 hypothetical protein; hypothetical protein 2208737 7173723 DvMF_1807 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436219.1 2207775 D 883 CDS YP_002436220.1 218886899 7173724 complement(2208831..2210336) 1 NC_011769.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0298 flagella basal body rod domain-containing protein; hypothetical protein 2210336 7173724 DvMF_1808 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436220.1 2208831 R 883 CDS YP_002436221.1 218886900 7173725 complement(2210644..2211510) 1 NC_011769.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2211510 7173725 DvMF_1809 Desulfovibrio vulgaris str. 'Miyazaki F' bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_002436221.1 2210644 R 883 CDS YP_002436222.1 218886901 7173726 complement(2211870..2213174) 1 NC_011769.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 2213174 eno 7173726 eno Desulfovibrio vulgaris str. 'Miyazaki F' phosphopyruvate hydratase YP_002436222.1 2211870 R 883 CDS YP_002436223.1 218886902 7173727 complement(2213449..2214237) 1 NC_011769.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 2214237 7173727 DvMF_1811 Desulfovibrio vulgaris str. 'Miyazaki F' pantothenate kinase YP_002436223.1 2213449 R 883 CDS YP_002436224.1 218886903 7173728 2214506..2214787 1 NC_011769.1 KEGG: dde:Dde_0288 hypothetical protein; hypothetical protein 2214787 7173728 DvMF_1812 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436224.1 2214506 D 883 CDS YP_002436225.1 218886904 7173729 complement(2215176..2215808) 1 NC_011769.1 KEGG: dde:Dde_0287 hypothetical protein; hypothetical protein 2215808 7173729 DvMF_1813 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436225.1 2215176 R 883 CDS YP_002436226.1 218886905 7173730 2215910..2216104 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0286 ferredoxin II; 4Fe-4S ferredoxin 2216104 7173730 DvMF_1814 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002436226.1 2215910 D 883 CDS YP_002436227.1 218886906 7173731 2216508..2216786 1 NC_011769.1 KEGG: dde:Dde_0283 hypothetical protein; hypothetical protein 2216786 7173731 DvMF_1815 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436227.1 2216508 D 883 CDS YP_002436228.1 218886907 7173732 2217002..2217328 1 NC_011769.1 KEGG: dde:Dde_0282 hypothetical protein; hypothetical protein 2217328 7173732 DvMF_1816 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436228.1 2217002 D 883 CDS YP_002436229.1 218886908 7173733 2217736..2218200 1 NC_011769.1 KEGG: dde:Dde_0281 chemotaxis protein CheX; chemotaxis protein CheX 2218200 7173733 DvMF_1817 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheX YP_002436229.1 2217736 D 883 CDS YP_002436230.1 218886909 7173734 2218752..2219468 1 NC_011769.1 PFAM: radical SAM protein; KEGG: dde:Dde_0278 radical SAM domain-containing protein; radical SAM protein 2219468 7173734 DvMF_1818 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002436230.1 2218752 D 883 CDS YP_002436231.1 218886910 7173735 2219503..2221413 1 NC_011769.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2221413 7173735 DvMF_1819 Desulfovibrio vulgaris str. 'Miyazaki F' anaerobic ribonucleoside triphosphate reductase YP_002436231.1 2219503 D 883 CDS YP_002436232.1 218886911 7173736 2221896..2223434 1 NC_011769.1 hypothetical protein 2223434 7173736 DvMF_1820 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436232.1 2221896 D 883 CDS YP_002436233.1 218886912 7173737 2223522..2224004 1 NC_011769.1 PFAM: Tir chaperone family protein; KEGG: lip:LI1032 hypothetical protein; Tir chaperone family protein 2224004 7173737 DvMF_1821 Desulfovibrio vulgaris str. 'Miyazaki F' Tir chaperone family protein YP_002436233.1 2223522 D 883 CDS YP_002436234.1 218886913 7173738 2224204..2225421 1 NC_011769.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_0276 aminotransferase, classes I and II; class I and II aminotransferase 2225421 7173738 DvMF_1822 Desulfovibrio vulgaris str. 'Miyazaki F' class I and II aminotransferase YP_002436234.1 2224204 D 883 CDS YP_002436235.1 218886914 7173739 complement(2225538..2226068) 1 NC_011769.1 KEGG: tbd:Tbd_1489 Appr-1-p processing protein; hypothetical protein 2226068 7173739 DvMF_1823 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436235.1 2225538 R 883 CDS YP_002436236.1 218886915 7173740 complement(2226081..2227391) 1 NC_011769.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: rci:RCIX977 metal-dependent phosphohydrolase (HD superfamily); metal dependent phosphohydrolase 2227391 7173740 DvMF_1824 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002436236.1 2226081 R 883 CDS YP_002436237.1 218886916 7173741 complement(2227464..2228483) 1 NC_011769.1 KEGG: dde:Dde_0271 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 2228483 7173741 DvMF_1825 Desulfovibrio vulgaris str. 'Miyazaki F' oligopeptide/dipeptide ABC transporter ATPase YP_002436237.1 2227464 R 883 CDS YP_002436238.1 218886917 7173742 complement(2228497..2229498) 1 NC_011769.1 KEGG: dde:Dde_0272 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 2229498 7173742 DvMF_1826 Desulfovibrio vulgaris str. 'Miyazaki F' oligopeptide/dipeptide ABC transporter ATPase YP_002436238.1 2228497 R 883 CDS YP_002436239.1 218886918 7173743 complement(2229502..2230422) 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0273 oligopeptide/dipeptide ABC transporter permease; binding-protein-dependent transporters inner membrane component 2230422 7173743 DvMF_1827 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002436239.1 2229502 R 883 CDS YP_002436240.1 218886919 7173744 complement(2230424..2231401) 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0274 oligopeptide/dipeptide ABC transporter permease; binding-protein-dependent transporters inner membrane component 2231401 7173744 DvMF_1828 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002436240.1 2230424 R 883 CDS YP_002436241.1 218886920 7173745 complement(2231969..2233531) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0275 oligopeptide/dipeptide ABC transporter periplasmic oligopeptide/dipeptide-binding protein; family 5 extracellular solute-binding protein 2233531 7173745 DvMF_1829 Desulfovibrio vulgaris str. 'Miyazaki F' family 5 extracellular solute-binding protein YP_002436241.1 2231969 R 883 CDS YP_002436242.1 218886921 7173746 complement(2233878..2234846) 1 NC_011769.1 KEGG: dde:Dde_1808 hypothetical protein; hypothetical protein 2234846 7173746 DvMF_1830 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436242.1 2233878 R 883 CDS YP_002436243.1 218886922 7173747 2235331..2235993 1 NC_011769.1 PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR; MarR family transcriptional regulator 2235993 7173747 DvMF_1831 Desulfovibrio vulgaris str. 'Miyazaki F' MarR family transcriptional regulator YP_002436243.1 2235331 D 883 CDS YP_002436244.1 218886923 7173748 2235990..2237174 1 NC_011769.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dre:492779 zgc:101549 Pfam: DUF326 NeuB Phage_GPL SAF PROSITE: AFP_LIKE; N-acylneuraminate-9-phosphate synthase 2237174 7173748 DvMF_1832 Desulfovibrio vulgaris str. 'Miyazaki F' N-acylneuraminate-9-phosphate synthase YP_002436244.1 2235990 D 883 CDS YP_002436245.1 218886924 7173749 2237174..2238373 1 NC_011769.1 KEGG: ecp:ECP_3032 hypothetical protein; hypothetical protein 2238373 7173749 DvMF_1833 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436245.1 2237174 D 883 CDS YP_002436246.1 218886925 7173750 2238370..2240433 1 NC_011769.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: vvu:VV1_0803 CMP-N-acetylneuraminic acid synthetase; acylneuraminate cytidylyltransferase 2240433 7173750 DvMF_1834 Desulfovibrio vulgaris str. 'Miyazaki F' acylneuraminate cytidylyltransferase YP_002436246.1 2238370 D 883 CDS YP_002436247.1 218886926 7173751 2240430..2241206 1 NC_011769.1 KEGG: sgr:SGR_4544 methyltransferase; methyltransferase 2241206 7173751 DvMF_1835 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase YP_002436247.1 2240430 D 883 CDS YP_002436248.1 218886927 7173752 2241306..2246327 1 NC_011769.1 TIGRFAM: methyltransferase FkbM family; PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_1576 glycosyl transferase family 2; FkbM family methyltransferase 2246327 7173752 DvMF_1836 Desulfovibrio vulgaris str. 'Miyazaki F' FkbM family methyltransferase YP_002436248.1 2241306 D 883 CDS YP_002436249.1 218886928 7173753 2246324..2247376 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH00761 beta-glycosyltransferase protein; family 2 glycosyl transferase 2247376 7173753 DvMF_1837 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002436249.1 2246324 D 883 CDS YP_002436250.1 218886929 7173754 2247369..2248844 1 NC_011769.1 PFAM: radical SAM protein; KEGG: sfu:Sfum_0802 radical SAM protein; radical SAM protein 2248844 7173754 DvMF_1838 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002436250.1 2247369 D 883 CDS YP_002436251.1 218886930 7173755 2248902..2250038 1 NC_011769.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sus:acid_0616 methyltransferase type 12; methyltransferase type 11 2250038 7173755 DvMF_1839 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase type 11 YP_002436251.1 2248902 D 883 CDS YP_002436252.1 218886931 7173756 2250368..2251525 1 NC_011769.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: dde:Dde_0439 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 2251525 7173756 DvMF_1840 Desulfovibrio vulgaris str. 'Miyazaki F' CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_002436252.1 2250368 D 883 CDS YP_002436253.1 218886932 7173757 2251527..2252204 1 NC_011769.1 KEGG: dde:Dde_0438 UDP-N-acetylglucosamine pyrophosphorylase related protein; UDP-N-acetylglucosamine pyrophosphorylase related protein 2252204 7173757 DvMF_1841 Desulfovibrio vulgaris str. 'Miyazaki F' UDP-N-acetylglucosamine pyrophosphorylase related protein YP_002436253.1 2251527 D 883 CDS YP_002436254.1 218886933 7173758 2252273..2254927 1 NC_011769.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: dde:Dde_0431 glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; family 2 glycosyl transferase 2254927 7173758 DvMF_1842 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002436254.1 2252273 D 883 CDS YP_002436255.1 218886934 7173759 2255115..2255783 1 NC_011769.1 KEGG: dde:Dde_3249 acetyltransferase; acetyltransferase 2255783 7173759 DvMF_1843 Desulfovibrio vulgaris str. 'Miyazaki F' acetyltransferase YP_002436255.1 2255115 D 883 CDS YP_002436256.1 218886935 7173760 2255961..2256725 1 NC_011769.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_3257 CMP-N-acetlyneuraminic acid synthetase; acylneuraminate cytidylyltransferase 2256725 7173760 DvMF_1844 Desulfovibrio vulgaris str. 'Miyazaki F' acylneuraminate cytidylyltransferase YP_002436256.1 2255961 D 883 CDS YP_002436257.1 218886936 7173761 2256710..2257744 1 NC_011769.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dde:Dde_3256 N-acetylneuraminate synthase; N-acylneuraminate-9-phosphate synthase 2257744 7173761 DvMF_1845 Desulfovibrio vulgaris str. 'Miyazaki F' N-acylneuraminate-9-phosphate synthase YP_002436257.1 2256710 D 883 CDS YP_002436258.1 218886937 7173762 2257737..2258963 1 NC_011769.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dde:Dde_3255 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 2258963 7173762 DvMF_1846 Desulfovibrio vulgaris str. 'Miyazaki F' UDP-N-acetylglucosamine 2-epimerase YP_002436258.1 2257737 D 883 CDS YP_002436259.1 218886938 7173763 complement(2258956..2259897) 1 NC_011769.1 PFAM: polysaccharide deacetylase; KEGG: dde:Dde_3250 polysaccharide deacetylase family protein; polysaccharide deacetylase 2259897 7173763 DvMF_1847 Desulfovibrio vulgaris str. 'Miyazaki F' polysaccharide deacetylase YP_002436259.1 2258956 R 883 CDS YP_002436260.1 218886939 7173764 complement(2259906..2261060) 1 NC_011769.1 KEGG: dde:Dde_3251 hypothetical protein; hypothetical protein 2261060 7173764 DvMF_1848 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436260.1 2259906 R 883 CDS YP_002436261.1 218886940 7173765 complement(2261057..2261989) 1 NC_011769.1 PFAM: radical SAM protein; KEGG: dde:Dde_3252 elongator protein 3/MiaB/NifB; radical SAM protein 2261989 7173765 DvMF_1849 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002436261.1 2261057 R 883 CDS YP_002436262.1 218886941 7173766 complement(2262005..2263510) 1 NC_011769.1 PFAM: capsule polysaccharide biosynthesis protein; KEGG: dde:Dde_3253 hypothetical protein; capsule polysaccharide biosynthesis protein 2263510 7173766 DvMF_1850 Desulfovibrio vulgaris str. 'Miyazaki F' capsule polysaccharide biosynthesis protein YP_002436262.1 2262005 R 883 CDS YP_002436263.1 218886942 7173767 complement(2263507..2264217) 1 NC_011769.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_3254 hypothetical protein; methyltransferase type 11 2264217 7173767 DvMF_1851 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase type 11 YP_002436263.1 2263507 R 883 CDS YP_002436264.1 218886943 7173768 2264492..2266969 1 NC_011769.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: gbm:Gbem_3740 glycosyl transferase family 2; family 2 glycosyl transferase 2266969 7173768 DvMF_1852 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002436264.1 2264492 D 883 CDS YP_002436265.1 218886944 7173769 complement(2267161..2268318) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0428 glycosyltransferase-like protein; group 1 glycosyl transferase 2268318 7173769 DvMF_1853 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002436265.1 2267161 R 883 CDS YP_002436266.1 218886945 7173770 complement(2268427..2269359) 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_0427 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 2269359 7173770 DvMF_1854 Desulfovibrio vulgaris str. 'Miyazaki F' NAD-dependent epimerase/dehydratase YP_002436266.1 2268427 R 883 CDS YP_002436267.1 218886946 7173771 complement(2269362..2270138) 1 NC_011769.1 KEGG: dde:Dde_0428 glycosyltransferase-like protein; glycosyltransferase-like protein 2270138 7173771 DvMF_1855 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyltransferase-like protein YP_002436267.1 2269362 R 883 CDS YP_002436268.1 218886947 7173772 complement(2270195..2270572) 1 NC_011769.1 KEGG: dde:Dde_3230 hypothetical protein; hypothetical protein 2270572 7173772 DvMF_1856 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436268.1 2270195 R 883 CDS YP_002436269.1 218886948 7173773 complement(2270876..2271508) 1 NC_011769.1 KEGG: dde:Dde_3232 hypothetical protein; hypothetical protein 2271508 7173773 DvMF_1857 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436269.1 2270876 R 883 CDS YP_002436270.1 218886949 7173774 2272085..2275660 1 NC_011769.1 KEGG: dde:Dde_3233 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 2275660 7173774 DvMF_1858 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002436270.1 2272085 D 883 CDS YP_002436271.1 218886950 7173775 2275666..2277165 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3234 two component Fis family transcriptional regulator; Fis family transcriptional regulator 2277165 7173775 DvMF_1859 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436271.1 2275666 D 883 CDS YP_002436272.1 218886951 7173776 2277836..2281483 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2281483 7173776 DvMF_1860 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_002436272.1 2277836 D 883 CDS YP_002436273.1 218886952 7173777 2281606..2283315 1 NC_011769.1 PFAM: L-lactate permease; KEGG: dde:Dde_3238 L-lactate transport; L-lactate permease 2283315 7173777 DvMF_1861 Desulfovibrio vulgaris str. 'Miyazaki F' L-lactate permease YP_002436273.1 2281606 D 883 CDS YP_002436274.1 218886953 7173778 2283486..2284871 1 NC_011769.1 PFAM: FAD linked oxidase; KEGG: dde:Dde_3239 glycolate oxidase subunit GlcD; FAD linked oxidase 2284871 7173778 DvMF_1862 Desulfovibrio vulgaris str. 'Miyazaki F' FAD linked oxidase YP_002436274.1 2283486 D 883 CDS YP_002436275.1 218886954 7173779 2284876..2286168 1 NC_011769.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3240 iron-sulfur cluster-binding protein; hypothetical protein 2286168 7173779 DvMF_1863 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436275.1 2284876 D 883 CDS YP_002436276.1 218886955 7173780 2286534..2288648 1 NC_011769.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2288648 7173780 DvMF_1864 Desulfovibrio vulgaris str. 'Miyazaki F' phosphate acetyltransferase YP_002436276.1 2286534 D 883 CDS YP_002436277.1 218886956 7173781 2288798..2290012 1 NC_011769.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2290012 7173781 DvMF_1865 Desulfovibrio vulgaris str. 'Miyazaki F' acetate kinase YP_002436277.1 2288798 D 883 CDS YP_002436278.1 218886957 7173782 2290169..2291230 1 NC_011769.1 PFAM: DRTGG domain protein; KEGG: dde:Dde_3243 hypothetical protein; DRTGG domain-containing protein 2291230 7173782 DvMF_1866 Desulfovibrio vulgaris str. 'Miyazaki F' DRTGG domain-containing protein YP_002436278.1 2290169 D 883 CDS YP_002436279.1 218886958 7173783 2291367..2291996 1 NC_011769.1 PFAM: protein of unknown function DUF162; KEGG: dde:Dde_3244 hypothetical protein; hypothetical protein 2291996 7173783 DvMF_1867 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436279.1 2291367 D 883 CDS YP_002436280.1 218886959 7173784 2292001..2294151 1 NC_011769.1 PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein; hypothetical protein 2294151 7173784 DvMF_1868 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436280.1 2292001 D 883 CDS YP_002436281.1 218886960 7173785 2294387..2296210 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 2296210 7173785 DvMF_1869 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Cache sensor YP_002436281.1 2294387 D 883 CDS YP_002436282.1 218886961 7173786 complement(2296434..2297339) 1 NC_011769.1 PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein; hypothetical protein 2297339 7173786 DvMF_1870 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436282.1 2296434 R 883 CDS YP_002436283.1 218886962 7173787 complement(2297570..2298598) 1 NC_011769.1 PFAM: rhodanese; KEGG: dde:Dde_3248 rhodanese-like protein; rhodanese 2298598 7173787 DvMF_1871 Desulfovibrio vulgaris str. 'Miyazaki F' rhodanese YP_002436283.1 2297570 R 883 CDS YP_002436284.1 218886963 7173789 complement(2299000..2300289) 1 NC_011769.1 PFAM: acetamidase/Formamidase; KEGG: gka:GK1391 acetamidase/formamidase; acetamidase/formamidase 2300289 7173789 DvMF_1872 Desulfovibrio vulgaris str. 'Miyazaki F' acetamidase/formamidase YP_002436284.1 2299000 R 883 CDS YP_002436285.1 218886964 7173790 2300700..2302052 1 NC_011769.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppd:Ppro_0838 radical SAM domain-containing protein; radical SAM protein 2302052 7173790 DvMF_1873 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002436285.1 2300700 D 883 CDS YP_002436286.1 218886965 7173791 2302417..2304678 1 NC_011769.1 KEGG: cte:CT0683 hypothetical protein; hypothetical protein 2304678 7173791 DvMF_1874 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436286.1 2302417 D 883 CDS YP_002436287.1 218886966 7173792 complement(2304675..2306792) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: mrd:Mrad2831_2393 PAS/PAC sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 2306792 7173792 DvMF_1875 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002436287.1 2304675 R 883 CDS YP_002436288.1 218886967 7173794 2308371..2308775 1 NC_011769.1 KEGG: mpt:Mpe_A0682 hypothetical protein; hypothetical protein 2308775 7173794 DvMF_1877 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436288.1 2308371 D 883 CDS YP_002436289.1 218886968 7173795 complement(2308946..2309377) 1 NC_011769.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_2562 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain protein 2309377 7173795 DvMF_1878 Desulfovibrio vulgaris str. 'Miyazaki F' hemerythrin HHE cation binding domain protein YP_002436289.1 2308946 R 883 CDS YP_002436290.1 218886969 7173796 2310199..2312718 1 NC_011769.1 PFAM: regulatory protein LuxR; KEGG: swo:Swol_1080 ATP-dependent transcriptional regulator-like protein; LuxR family ATP-dependent transcriptional regulator 2312718 7173796 DvMF_1879 Desulfovibrio vulgaris str. 'Miyazaki F' LuxR family ATP-dependent transcriptional regulator YP_002436290.1 2310199 D 883 CDS YP_002436291.1 218886970 7173797 2312841..2315651 1 NC_011769.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bav:BAV1572 autotransporter; outer membrane autotransporter barrel domain-containing protein 2315651 7173797 DvMF_1880 Desulfovibrio vulgaris str. 'Miyazaki F' outer membrane autotransporter barrel domain-containing protein YP_002436291.1 2312841 D 883 CDS YP_002436292.1 218886971 7173798 2315847..2317625 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2317625 7173798 DvMF_1881 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002436292.1 2315847 D 883 CDS YP_002436293.1 218886972 7173799 complement(2317893..2318258) 1 NC_011769.1 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit 2318258 7173799 DvMF_1882 Desulfovibrio vulgaris str. 'Miyazaki F' acetolactate synthase 1 regulatory subunit YP_002436293.1 2317893 R 883 CDS YP_002436294.1 218886973 7173800 complement(2318251..2320098) 1 NC_011769.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: azo:azo1034 acetolactate synthase catalytic subunit; acetolactate synthase catalytic subunit 2320098 7173800 DvMF_1883 Desulfovibrio vulgaris str. 'Miyazaki F' acetolactate synthase catalytic subunit YP_002436294.1 2318251 R 883 CDS YP_002436295.1 218886974 7173802 2321193..2321537 1 NC_011769.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein; type IV pilus assembly PilZ 2321537 7173802 DvMF_1884 Desulfovibrio vulgaris str. 'Miyazaki F' type IV pilus assembly PilZ YP_002436295.1 2321193 D 883 CDS YP_002436296.1 218886975 7173803 complement(2321814..2322383) 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: pap:PSPA7_5649 hypothetical protein; hypothetical protein 2322383 7173803 DvMF_1885 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436296.1 2321814 R 883 CDS YP_002436297.1 218886976 7173804 complement(2323072..2323395) 1 NC_011769.1 PFAM: HesB/YadR/YfhF-family protein; KEGG: dde:Dde_2018 HesB-like domain-containing protein; HesB/YadR/YfhF-family protein 2323395 7173804 DvMF_1886 Desulfovibrio vulgaris str. 'Miyazaki F' HesB/YadR/YfhF-family protein YP_002436297.1 2323072 R 883 CDS YP_002436298.1 218886977 7173805 2323584..2324645 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein; family 2 glycosyl transferase 2324645 7173805 DvMF_1887 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002436298.1 2323584 D 883 CDS YP_002436299.1 218886978 7173806 complement(2324731..2325333) 1 NC_011769.1 PFAM: methyladenine glycosylase; KEGG: dde:Dde_3701 DNA-3-methyladenine glycosylase I; DNA-3-methyladenine glycosylase I 2325333 7173806 DvMF_1888 Desulfovibrio vulgaris str. 'Miyazaki F' DNA-3-methyladenine glycosylase I YP_002436299.1 2324731 R 883 CDS YP_002436300.1 218886979 7173807 complement(2325342..2325821) 1 NC_011769.1 KEGG: dde:Dde_3700 hypothetical protein; hypothetical protein 2325821 7173807 DvMF_1889 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436300.1 2325342 R 883 CDS YP_002436301.1 218886980 7173808 2326240..2327316 1 NC_011769.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: lbl:LBL_1166 alcohol dehyodrogenase; iron-containing alcohol dehydrogenase 2327316 7173808 DvMF_1890 Desulfovibrio vulgaris str. 'Miyazaki F' iron-containing alcohol dehydrogenase YP_002436301.1 2326240 D 883 CDS YP_002436302.1 218886981 7173809 2327706..2328887 1 NC_011769.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: lic:LIC12168 aspartate aminotransferase; glutamine--scyllo-inositol transaminase 2328887 7173809 DvMF_1891 Desulfovibrio vulgaris str. 'Miyazaki F' glutamine--scyllo-inositol transaminase YP_002436302.1 2327706 D 883 CDS YP_002436303.1 218886982 7173810 2328895..2330853 1 NC_011769.1 KEGG: hch:HCH_05265 CMP-N-acetylneuraminic acid synthetase; CMP-N-acetylneuraminic acid synthetase 2330853 7173810 DvMF_1892 Desulfovibrio vulgaris str. 'Miyazaki F' CMP-N-acetylneuraminic acid synthetase YP_002436303.1 2328895 D 883 CDS YP_002436304.1 218886983 7173811 2330850..2331545 1 NC_011769.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: lbl:LBL_1169 cytidylyltransferase; acylneuraminate cytidylyltransferase 2331545 7173811 DvMF_1893 Desulfovibrio vulgaris str. 'Miyazaki F' acylneuraminate cytidylyltransferase YP_002436304.1 2330850 D 883 CDS YP_002436305.1 218886984 7173812 2331689..2332753 1 NC_011769.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: lbl:LBL_1168 N-acetylneuraminic acid (sialic acid) synthetase; N-acylneuraminate-9-phosphate synthase 2332753 7173812 DvMF_1894 Desulfovibrio vulgaris str. 'Miyazaki F' N-acylneuraminate-9-phosphate synthase YP_002436305.1 2331689 D 883 CDS YP_002436306.1 218886985 7173813 2332910..2334592 1 NC_011769.1 KEGG: mag:amb0137 hypothetical protein; hypothetical protein 2334592 7173813 DvMF_1895 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436306.1 2332910 D 883 CDS YP_002436307.1 218886986 7173814 2334737..2335408 1 NC_011769.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: amu:Amuc_0639 transferase hexapeptide repeat containing protein; transferase 2335408 7173814 DvMF_1896 Desulfovibrio vulgaris str. 'Miyazaki F' transferase YP_002436307.1 2334737 D 883 CDS YP_002436308.1 218886987 7173815 2335594..2337129 1 NC_011769.1 PFAM: polysaccharide biosynthesis protein; KEGG: dar:Daro_1251 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2337129 7173815 DvMF_1897 Desulfovibrio vulgaris str. 'Miyazaki F' polysaccharide biosynthesis protein YP_002436308.1 2335594 D 883 CDS YP_002436309.1 218886988 7173816 2337422..2338201 1 NC_011769.1 PFAM: HpcH/HpaI aldolase; KEGG: dde:Dde_3685 HPCH/HPAI aldolase family protein; HpcH/HpaI aldolase 2338201 7173816 DvMF_1898 Desulfovibrio vulgaris str. 'Miyazaki F' HpcH/HpaI aldolase YP_002436309.1 2337422 D 883 CDS YP_002436310.1 218886989 7173817 2338416..2339330 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_3686 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 2339330 7173817 DvMF_1899 Desulfovibrio vulgaris str. 'Miyazaki F' NAD-dependent epimerase/dehydratase YP_002436310.1 2338416 D 883 CDS YP_002436311.1 218886990 7173818 2339805..2340575 1 NC_011769.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2340575 7173818 DvMF_1900 Desulfovibrio vulgaris str. 'Miyazaki F' 3-deoxy-manno-octulosonate cytidylyltransferase YP_002436311.1 2339805 D 883 CDS YP_002436312.1 218886991 7173819 2340586..2341224 1 NC_011769.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: dde:Dde_3688 acetyltransferase; transferase 2341224 7173819 DvMF_1901 Desulfovibrio vulgaris str. 'Miyazaki F' transferase YP_002436312.1 2340586 D 883 CDS YP_002436313.1 218886992 7173820 2341354..2342259 1 NC_011769.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_3689 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 2342259 7173820 DvMF_1902 Desulfovibrio vulgaris str. 'Miyazaki F' D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_002436313.1 2341354 D 883 CDS YP_002436314.1 218886993 7173821 2342404..2343045 1 NC_011769.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_3690 HAD superfamily hydrolase; haloacid dehalogenase 2343045 7173821 DvMF_1903 Desulfovibrio vulgaris str. 'Miyazaki F' haloacid dehalogenase YP_002436314.1 2342404 D 883 CDS YP_002436315.1 218886994 7173822 2343324..2345327 1 NC_011769.1 KEGG: lbl:LBL_1208 hypothetical protein; hypothetical protein 2345327 7173822 DvMF_1904 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436315.1 2343324 D 883 CDS YP_002436316.1 218886995 7173823 complement(2345540..2347201) 1 NC_011769.1 PFAM: sulfatase; KEGG: pen:PSEEN4076 hypothetical protein; hypothetical protein 2347201 7173823 DvMF_1905 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436316.1 2345540 R 883 CDS YP_002436317.1 218886996 7173824 2347424..2348740 1 NC_011769.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dde:Dde_3693 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis-like; DegT/DnrJ/EryC1/StrS aminotransferase 2348740 7173824 DvMF_1906 Desulfovibrio vulgaris str. 'Miyazaki F' DegT/DnrJ/EryC1/StrS aminotransferase YP_002436317.1 2347424 D 883 CDS YP_002436318.1 218886997 7173825 2348832..2351996 1 NC_011769.1 KEGG: dde:Dde_2558 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2351996 7173825 DvMF_1907 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_002436318.1 2348832 D 883 CDS YP_002436319.1 218886998 7173826 2352430..2353212 1 NC_011769.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: nucleotidyl transferase; KEGG: dde:Dde_3694 glucose-1-phosphate cytidylyl-transferase; glucose-1-phosphate cytidylyltransferase 2353212 7173826 DvMF_1908 Desulfovibrio vulgaris str. 'Miyazaki F' glucose-1-phosphate cytidylyltransferase YP_002436319.1 2352430 D 883 CDS YP_002436320.1 218886999 7173827 2353476..2354585 1 NC_011769.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: dde:Dde_3695 CDP-glucose-4,6-dehydratase; CDP-glucose 4,6-dehydratase 2354585 7173827 DvMF_1909 Desulfovibrio vulgaris str. 'Miyazaki F' CDP-glucose 4,6-dehydratase YP_002436320.1 2353476 D 883 CDS YP_002436321.1 218887000 7173828 2354611..2355060 1 NC_011769.1 KEGG: dde:Dde_3696 polysaccharide biosynthesis domain-containing protein; polysaccharide biosynthesis domain-containing protein 2355060 7173828 DvMF_1910 Desulfovibrio vulgaris str. 'Miyazaki F' polysaccharide biosynthesis domain-containing protein YP_002436321.1 2354611 D 883 CDS YP_002436322.1 218887001 7173829 2355235..2356368 1 NC_011769.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dde:Dde_3697 aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 2356368 7173829 DvMF_1911 Desulfovibrio vulgaris str. 'Miyazaki F' DegT/DnrJ/EryC1/StrS aminotransferase YP_002436322.1 2355235 D 883 CDS YP_002436323.1 218887002 7173830 2356526..2357554 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3698 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2357554 7173830 DvMF_1912 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002436323.1 2356526 D 883 CDS YP_002436324.1 218887003 7173831 2358890..2359222 1 NC_011769.1 KEGG: dde:Dde_1495 hypothetical protein; hypothetical protein 2359222 7173831 DvMF_1913 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436324.1 2358890 D 883 CDS YP_002436325.1 218887004 7173832 2359458..2360645 1 NC_011769.1 PFAM: protein of unknown function DUF939; KEGG: dde:Dde_0097 hypothetical protein; hypothetical protein 2360645 7173832 DvMF_1914 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436325.1 2359458 D 883 CDS YP_002436326.1 218887005 7173833 2360689..2360985 1 NC_011769.1 KEGG: pnu:Pnuc_1322 hypothetical protein; hypothetical protein 2360985 7173833 DvMF_1915 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436326.1 2360689 D 883 CDS YP_002436327.1 218887006 7173834 2361327..2362139 1 NC_011769.1 PFAM: zinc/iron permease; KEGG: cbf:CLI_1259 zinc transporter ZIP family; zinc/iron permease 2362139 7173834 DvMF_1916 Desulfovibrio vulgaris str. 'Miyazaki F' zinc/iron permease YP_002436327.1 2361327 D 883 CDS YP_002436328.1 218887007 7173835 2362328..2364280 1 NC_011769.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; ATPase P; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: amu:Amuc_1839 ATPase P; ATPase P 2364280 7173835 DvMF_1917 Desulfovibrio vulgaris str. 'Miyazaki F' ATPase P YP_002436328.1 2362328 D 883 CDS YP_002436329.1 218887008 7173836 2364579..2365325 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_0168 extracellular solute-binding protein; family 3 extracellular solute-binding protein 2365325 7173836 DvMF_1918 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002436329.1 2364579 D 883 CDS YP_002436330.1 218887009 7173837 2365465..2366136 1 NC_011769.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0167 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 2366136 7173837 DvMF_1919 Desulfovibrio vulgaris str. 'Miyazaki F' polar amino acid ABC transporter inner membrane protein YP_002436330.1 2365465 D 883 CDS YP_002436331.1 218887010 7173838 2366149..2366898 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0166 ATPase; ABC transporter 2366898 7173838 DvMF_1920 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436331.1 2366149 D 883 CDS YP_002436332.1 218887011 7173839 2367110..2368414 1 NC_011769.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; helix-hairpin-helix motif; HhH-GPD family protein; KEGG: dde:Dde_0212 A/G-specific DNA-adenine glycosylase; A/G-specific adenine glycosylase 2368414 7173839 DvMF_1921 Desulfovibrio vulgaris str. 'Miyazaki F' A/G-specific adenine glycosylase YP_002436332.1 2367110 D 883 CDS YP_002436333.1 218887012 7173840 complement(2368549..2371248) 1 NC_011769.1 KEGG: rxy:Rxyl_1043 hypothetical protein; hypothetical protein 2371248 7173840 DvMF_1922 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436333.1 2368549 R 883 CDS YP_002436334.1 218887013 7173841 complement(2371248..2372399) 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: reu:Reut_A2635 glycosyl transferase, family 2; family 2 glycosyl transferase 2372399 7173841 DvMF_1923 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002436334.1 2371248 R 883 CDS YP_002436335.1 218887014 7173842 complement(2372553..2373755) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0213 ATPase; ABC transporter 2373755 7173842 DvMF_1924 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436335.1 2372553 R 883 CDS YP_002436336.1 218887015 7173843 complement(2373740..2375062) 1 NC_011769.1 PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein; aminoglycoside phosphotransferase 2375062 7173843 DvMF_1925 Desulfovibrio vulgaris str. 'Miyazaki F' aminoglycoside phosphotransferase YP_002436336.1 2373740 R 883 CDS YP_002436337.1 218887016 7173844 2375497..2375838 1 NC_011769.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: wsu:WS2102 hypothetical protein; TraR/DksA family transcriptional regulator 2375838 7173844 DvMF_1926 Desulfovibrio vulgaris str. 'Miyazaki F' TraR/DksA family transcriptional regulator YP_002436337.1 2375497 D 883 CDS YP_002436338.1 218887017 7173845 2375912..2377843 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0215 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2377843 7173845 DvMF_1927 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002436338.1 2375912 D 883 CDS YP_002436339.1 218887018 7173846 2378075..2379457 1 NC_011769.1 PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_0216 UDP-galactopyranose mutase; FAD dependent oxidoreductase 2379457 7173846 DvMF_1928 Desulfovibrio vulgaris str. 'Miyazaki F' FAD dependent oxidoreductase YP_002436339.1 2378075 D 883 CDS YP_002436340.1 218887019 7173847 2379495..2380565 1 NC_011769.1 PFAM: creatinase; peptidase M24; KEGG: dde:Dde_0217 M24 family peptidase; peptidase M24 2380565 7173847 DvMF_1929 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M24 YP_002436340.1 2379495 D 883 CDS YP_002436341.1 218887020 7173848 complement(2380686..2381120) 1 NC_011769.1 PFAM: protein of unknown function DUF336; KEGG: dsy:DSY4743 hypothetical protein; hypothetical protein 2381120 7173848 DvMF_1930 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436341.1 2380686 R 883 CDS YP_002436342.1 218887021 7173849 complement(2381132..2383054) 1 NC_011769.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: drm:Dred_2756 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM 2383054 7173849 DvMF_1931 Desulfovibrio vulgaris str. 'Miyazaki F' TRAP dicarboxylate transporter subunit DctM YP_002436342.1 2381132 R 883 CDS YP_002436343.1 218887022 7173850 complement(2383139..2384146) 1 NC_011769.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: drm:Dred_2757 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP 2384146 7173850 DvMF_1932 Desulfovibrio vulgaris str. 'Miyazaki F' TRAP dicarboxylate transporter subunit DctP YP_002436343.1 2383139 R 883 CDS YP_002436344.1 218887023 7173851 2384612..2386036 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; ATPase AAA; KEGG: cbe:Cbei_3352 sigma54 specific transcriptional regulator, fis family; Fis family transcriptional regulator 2386036 7173851 DvMF_1933 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436344.1 2384612 D 883 CDS YP_002436345.1 218887024 7173852 complement(2386190..2387932) 1 NC_011769.1 catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase 2387932 7173852 DvMF_1934 Desulfovibrio vulgaris str. 'Miyazaki F' sulfoacetaldehyde acetyltransferase YP_002436345.1 2386190 R 883 CDS YP_002436346.1 218887025 7173853 2388346..2388756 1 NC_011769.1 KEGG: dde:Dde_0181 hypothetical protein; hypothetical protein 2388756 7173853 DvMF_1935 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436346.1 2388346 D 883 CDS YP_002436347.1 218887026 7173854 complement(2388937..2390421) 1 NC_011769.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: dde:Dde_0179 deoxyribodipyrimidine photo-lyase type II; deoxyribodipyrimidine photo-lyase 2390421 7173854 DvMF_1936 Desulfovibrio vulgaris str. 'Miyazaki F' deoxyribodipyrimidine photo-lyase YP_002436347.1 2388937 R 883 CDS YP_002436348.1 218887027 7173855 complement(2390558..2391367) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_0178 response regulator receiver domain-containing protein; response regulator receiver protein 2391367 7173855 DvMF_1937 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436348.1 2390558 R 883 CDS YP_002436349.1 218887028 7173856 complement(2391861..2392826) 1 NC_011769.1 KEGG: dde:Dde_0177 DNA polymerase III delta prime subunit; DNA polymerase III subunit delta' 2392826 7173856 DvMF_1938 Desulfovibrio vulgaris str. 'Miyazaki F' DNA polymerase III subunit delta' YP_002436349.1 2391861 R 883 CDS YP_002436350.1 218887029 7173857 complement(2393162..2394448) 1 NC_011769.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2394448 7173857 DvMF_1939 Desulfovibrio vulgaris str. 'Miyazaki F' adenylosuccinate synthetase YP_002436350.1 2393162 R 883 CDS YP_002436351.1 218887030 7173858 2394830..2396575 1 NC_011769.1 PFAM: lytic transglycosylase catalytic; KEGG: dde:Dde_0175 transglycosylase SLT domain-containing protein; lytic transglycosylase 2396575 7173858 DvMF_1940 Desulfovibrio vulgaris str. 'Miyazaki F' lytic transglycosylase YP_002436351.1 2394830 D 883 CDS YP_002436352.1 218887031 7173859 complement(2396495..2396872) 1 NC_011769.1 KEGG: lip:LI0201 hypothetical protein; hypothetical protein 2396872 7173859 DvMF_1941 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436352.1 2396495 R 883 CDS YP_002436353.1 218887032 7173860 2397291..2398583 1 NC_011769.1 PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase 2398583 7173860 DvMF_1942 Desulfovibrio vulgaris str. 'Miyazaki F' IMP cyclohydrolase YP_002436353.1 2397291 D 883 CDS YP_002436354.1 218887033 7173861 2398885..2401092 1 NC_011769.1 PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein; ribonuclease II 2401092 7173861 DvMF_1943 Desulfovibrio vulgaris str. 'Miyazaki F' ribonuclease II YP_002436354.1 2398885 D 883 CDS YP_002436355.1 218887034 7173862 2401222..2401950 1 NC_011769.1 PFAM: protein of unknown function DUF205; KEGG: dde:Dde_0172 acyl-phosphate glycerol-3-phosphate acyltransferase; hypothetical protein 2401950 7173862 DvMF_1944 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436355.1 2401222 D 883 CDS YP_002436356.1 218887035 7173863 2402038..2403516 1 NC_011769.1 KEGG: dde:Dde_0171 L-threonine synthase; TIGRFAM: threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase 2403516 7173863 DvMF_1945 Desulfovibrio vulgaris str. 'Miyazaki F' threonine synthase YP_002436356.1 2402038 D 883 CDS YP_002436357.1 218887036 7173864 2403764..2404363 1 NC_011769.1 PFAM: MGS domain protein; KEGG: dde:Dde_0377 phosphoribosylaminoimidazolecarboxamide formyltransferase; phosphoribosylaminoimidazolecarboxamide formyltransferase 2404363 7173864 DvMF_1946 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosylaminoimidazolecarboxamide formyltransferase YP_002436357.1 2403764 D 883 CDS YP_002436358.1 218887037 7173865 2404558..2406525 1 NC_011769.1 TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: dde:Dde_0376 GTP-binding protein HflX; GTP-binding proten HflX 2406525 7173865 DvMF_1947 Desulfovibrio vulgaris str. 'Miyazaki F' GTP-binding proten HflX YP_002436358.1 2404558 D 883 CDS YP_002436359.1 218887038 7173866 2407936..2409648 1 NC_011769.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: dde:Dde_0374 rhodanese-like protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2409648 7173866 DvMF_1948 Desulfovibrio vulgaris str. 'Miyazaki F' FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002436359.1 2407936 D 883 CDS YP_002436360.1 218887039 7173867 complement(2409929..2410828) 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: amr:AM1_C0051 DUF6 domain transmembrane protein; hypothetical protein 2410828 7173867 DvMF_1949 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436360.1 2409929 R 883 CDS YP_002436361.1 218887040 7173868 complement(2411162..2412178) 1 NC_011769.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pde:Pden_4239 methylated-DNA--protein-cysteine methyltransferase; AraC family transcriptional regulator 2412178 7173868 DvMF_1950 Desulfovibrio vulgaris str. 'Miyazaki F' AraC family transcriptional regulator YP_002436361.1 2411162 R 883 CDS YP_002436362.1 218887041 7173869 2412549..2412788 1 NC_011769.1 hypothetical protein 2412788 7173869 DvMF_1951 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436362.1 2412549 D 883 CDS YP_002436363.1 218887042 7173870 2412960..2414591 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2414591 7173870 DvMF_1952 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002436363.1 2412960 D 883 CDS YP_002436364.1 218887043 7173871 complement(2414670..2415680) 1 NC_011769.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_2459 ThiF protein; UBA/THIF-type NAD/FAD binding protein 2415680 7173871 DvMF_1953 Desulfovibrio vulgaris str. 'Miyazaki F' UBA/THIF-type NAD/FAD binding protein YP_002436364.1 2414670 R 883 CDS YP_002436365.1 218887044 7173872 complement(2415776..2416114) 1 NC_011769.1 KEGG: pth:PTH_1468 hypothetical protein; hypothetical protein 2416114 7173872 DvMF_1954 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436365.1 2415776 R 883 CDS YP_002436366.1 218887045 7173873 complement(2416133..2416360) 1 NC_011769.1 PFAM: thiamineS protein; KEGG: dde:Dde_2458 hypothetical protein; sulfur carrier protein ThiS 2416360 7173873 DvMF_1955 Desulfovibrio vulgaris str. 'Miyazaki F' sulfur carrier protein ThiS YP_002436366.1 2416133 R 883 CDS YP_002436367.1 218887046 7173874 complement(2416439..2418166) 1 NC_011769.1 PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; KEGG: pth:PTH_2604 aldehyde:ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase 2418166 7173874 DvMF_1956 Desulfovibrio vulgaris str. 'Miyazaki F' aldehyde ferredoxin oxidoreductase YP_002436367.1 2416439 R 883 CDS YP_002436368.1 218887047 7173875 complement(2418778..2419854) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_3673 polyamine ABC transporter periplasmic polyamine-binding protein; extracellular solute-binding protein 2419854 7173875 DvMF_1957 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular solute-binding protein YP_002436368.1 2418778 R 883 CDS YP_002436369.1 218887048 7173876 complement(2419854..2420654) 1 NC_011769.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 2420654 potC 7173876 potC Desulfovibrio vulgaris str. 'Miyazaki F' spermidine/putrescine ABC transporter membrane protein YP_002436369.1 2419854 R 883 CDS YP_002436370.1 218887049 7173877 complement(2420656..2421624) 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lip:LI0830 ABC-type spermidine/putrescine transport system, permease I; spermidine/putrescine ABC transporter permease 2421624 7173877 DvMF_1959 Desulfovibrio vulgaris str. 'Miyazaki F' spermidine/putrescine ABC transporter permease YP_002436370.1 2420656 R 883 CDS YP_002436371.1 218887050 7173878 complement(2421611..2422810) 1 NC_011769.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 2422810 potA 7173878 potA Desulfovibrio vulgaris str. 'Miyazaki F' putrescine/spermidine ABC transporter ATPase YP_002436371.1 2421611 R 883 CDS YP_002436372.1 218887051 7173879 complement(2423918..2424913) 1 NC_011769.1 PFAM: polysaccharide deacetylase; KEGG: gme:Gmet_2850 polysaccharide deacetylase; polysaccharide deacetylase 2424913 7173879 DvMF_1961 Desulfovibrio vulgaris str. 'Miyazaki F' polysaccharide deacetylase YP_002436372.1 2423918 R 883 CDS YP_002436373.1 218887052 7173880 complement(2424917..2425864) 1 NC_011769.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate/quinate 5-dehydrogenase; shikimate dehydrogenase substrate binding domain protein; KEGG: dde:Dde_3564 shikimate dehydrogenase; shikimate 5-dehydrogenase 2425864 7173880 DvMF_1962 Desulfovibrio vulgaris str. 'Miyazaki F' shikimate 5-dehydrogenase YP_002436373.1 2424917 R 883 CDS YP_002436374.1 218887053 7173881 complement(2426158..2427039) 1 NC_011769.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2427039 hisG 7173881 hisG Desulfovibrio vulgaris str. 'Miyazaki F' ATP phosphoribosyltransferase YP_002436374.1 2426158 R 883 CDS YP_002436375.1 218887054 7173882 complement(2427039..2427440) 1 NC_011769.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 2427440 hisI 7173882 hisI Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosyl-AMP cyclohydrolase YP_002436375.1 2427039 R 883 CDS YP_002436376.1 218887055 7173883 complement(2427647..2428804) 1 NC_011769.1 PFAM: class II aldolase/adducin family protein; protein of unknown function UPF0066; KEGG: dde:Dde_3569 hypothetical protein; class II aldolase/adducin family protein 2428804 7173883 DvMF_1965 Desulfovibrio vulgaris str. 'Miyazaki F' class II aldolase/adducin family protein YP_002436376.1 2427647 R 883 CDS YP_002436377.1 218887056 7173884 complement(2429043..2430140) 1 NC_011769.1 KEGG: dde:Dde_3570 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 2430140 7173884 DvMF_1966 Desulfovibrio vulgaris str. 'Miyazaki F' thiamine-monophosphate kinase YP_002436377.1 2429043 R 883 CDS YP_002436378.1 218887057 7173885 complement(2430284..2432653) 1 NC_011769.1 PFAM: UvrD/REP helicase; KEGG: dde:Dde_3571 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 2432653 7173885 DvMF_1967 Desulfovibrio vulgaris str. 'Miyazaki F' UvrD/REP helicase YP_002436378.1 2430284 R 883 CDS YP_002436379.1 218887058 7173886 complement(2432710..2434473) 1 NC_011769.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein; type I phosphodiesterase/nucleotide pyrophosphatase 2434473 7173886 DvMF_1968 Desulfovibrio vulgaris str. 'Miyazaki F' type I phosphodiesterase/nucleotide pyrophosphatase YP_002436379.1 2432710 R 883 CDS YP_002436380.1 218887059 7173887 complement(2434693..2434896) 1 NC_011769.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: gsu:GSU1550 4-oxalocrotonate tautomerase family protein; 4-oxalocrotonate tautomerase 2434896 7173887 DvMF_1969 Desulfovibrio vulgaris str. 'Miyazaki F' 4-oxalocrotonate tautomerase YP_002436380.1 2434693 R 883 CDS YP_002436381.1 218887060 7173888 2435371..2435865 1 NC_011769.1 KEGG: dde:Dde_3573 hypothetical protein; hypothetical protein 2435865 7173888 DvMF_1970 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436381.1 2435371 D 883 CDS YP_002436382.1 218887061 7173890 2436553..2438775 1 NC_011769.1 KEGG: psa:PST_3745 CRISPR-associated helicase Cas3 domain protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases; CRISPR-associated helicase Cas3 2438775 7173890 DvMF_1971 Desulfovibrio vulgaris str. 'Miyazaki F' CRISPR-associated helicase Cas3 YP_002436382.1 2436553 D 883 CDS YP_002436383.1 218887062 7173891 2438875..2439540 1 NC_011769.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: psa:PST_3746 CRISPR-associated protein, CT1134 family; CRISPR-associated protein Cas5 family 2439540 7173891 DvMF_1972 Desulfovibrio vulgaris str. 'Miyazaki F' CRISPR-associated protein Cas5 family YP_002436383.1 2438875 D 883 CDS YP_002436384.1 218887063 7173892 2439537..2441426 1 NC_011769.1 TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133; KEGG: xom:XOO_0796 hypothetical protein; CRISPR-associated protein, Csd1 family 2441426 7173892 DvMF_1973 Desulfovibrio vulgaris str. 'Miyazaki F' CRISPR-associated protein, Csd1 family YP_002436384.1 2439537 D 883 CDS YP_002436385.1 218887064 7173893 2441451..2442404 1 NC_011769.1 TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: gme:Gmet_1067 CRISPR-associated TM1801 family protein; CRISPR-associated protein, Csd2 family 2442404 7173893 DvMF_1974 Desulfovibrio vulgaris str. 'Miyazaki F' CRISPR-associated protein, Csd2 family YP_002436385.1 2441451 D 883 CDS YP_002436386.1 218887065 7173894 2442415..2443182 1 NC_011769.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: cph:Cpha266_1432 CRISPR-associated protein Cas4; CRISPR-associated protein Cas4 2443182 7173894 DvMF_1975 Desulfovibrio vulgaris str. 'Miyazaki F' CRISPR-associated protein Cas4 YP_002436386.1 2442415 D 883 CDS YP_002436387.1 218887066 7173895 2443182..2444213 1 NC_011769.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: sat:SYN_02473 hypothetical cytosolic protein; CRISPR-associated protein Cas1 2444213 7173895 DvMF_1976 Desulfovibrio vulgaris str. 'Miyazaki F' CRISPR-associated protein Cas1 YP_002436387.1 2443182 D 883 CDS YP_002436388.1 218887067 7173896 2444216..2444506 1 NC_011769.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: gdi:GDI0058 hypothetical protein; CRISPR-associated protein Cas2 2444506 7173896 DvMF_1977 Desulfovibrio vulgaris str. 'Miyazaki F' CRISPR-associated protein Cas2 YP_002436388.1 2444216 D 883 CDS YP_002436389.1 218887068 7173897 2448257..2448454 1 NC_011769.1 hypothetical protein 2448454 7173897 DvMF_1978 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436389.1 2448257 D 883 CDS YP_002436390.1 218887069 7173898 2448558..2449097 1 NC_011769.1 KEGG: sus:acid_7821 helix-hairpin-helix repeat-containing competence protein ComEA; hypothetical protein 2449097 7173898 DvMF_1979 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436390.1 2448558 D 883 CDS YP_002436391.1 218887070 7173899 2449371..2449688 1 NC_011769.1 KEGG: sus:acid_6343 hypothetical protein; hypothetical protein 2449688 7173899 DvMF_1980 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436391.1 2449371 D 883 CDS YP_002436392.1 218887071 7173900 complement(2450199..2450798) 1 NC_011769.1 PFAM: rubrerythrin; ferritin; KEGG: dde:Dde_0133 bacterioferritin; ferritin 2450798 7173900 DvMF_1981 Desulfovibrio vulgaris str. 'Miyazaki F' ferritin YP_002436392.1 2450199 R 883 CDS YP_002436393.1 218887072 7173901 2451196..2454372 1 NC_011769.1 KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 2454372 7173901 DvMF_1982 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002436393.1 2451196 D 883 CDS YP_002436394.1 218887073 7173902 complement(2454443..2455216) 1 NC_011769.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hmo:HM1_1613 phosphoglycolate phosphatase; phosphoglycolate phosphatase 2455216 7173902 DvMF_1983 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoglycolate phosphatase YP_002436394.1 2454443 R 883 CDS YP_002436395.1 218887074 7173903 2455824..2457071 1 NC_011769.1 PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0644 protein of unknown function DUF81; hypothetical protein 2457071 7173903 DvMF_1984 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436395.1 2455824 D 883 CDS YP_002436396.1 218887075 7173904 2457073..2457792 1 NC_011769.1 KEGG: sfu:Sfum_0645 hypothetical protein; hypothetical protein 2457792 7173904 DvMF_1985 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436396.1 2457073 D 883 CDS YP_002436397.1 218887076 7173905 2458170..2458886 1 NC_011769.1 PFAM: manganese and iron superoxide dismutase; KEGG: nmu:Nmul_A0501 superoxide dismutase; superoxide dismutase 2458886 7173905 DvMF_1986 Desulfovibrio vulgaris str. 'Miyazaki F' superoxide dismutase YP_002436397.1 2458170 D 883 CDS YP_002436398.1 218887077 7173906 complement(2459260..2462016) 1 NC_011769.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase; pyruvate, water dikinase 2462016 7173906 DvMF_1987 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate, water dikinase YP_002436398.1 2459260 R 883 CDS YP_002436399.1 218887078 7173907 complement(2462150..2462509) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein; response regulator receiver protein 2462509 7173907 DvMF_1988 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436399.1 2462150 R 883 CDS YP_002436400.1 218887079 7173908 complement(2462844..2464544) 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0617 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2464544 7173908 DvMF_1989 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002436400.1 2462844 R 883 CDS YP_002436401.1 218887080 7173909 complement(2464945..2467740) 1 NC_011769.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase; pyruvate, water dikinase 2467740 7173909 DvMF_1990 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate, water dikinase YP_002436401.1 2464945 R 883 CDS YP_002436402.1 218887081 7173910 complement(2467776..2468237) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein; response regulator receiver protein 2468237 7173910 DvMF_1991 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436402.1 2467776 R 883 CDS YP_002436403.1 218887082 7173911 2468570..2469688 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0642 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2469688 7173911 DvMF_1992 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002436403.1 2468570 D 883 CDS YP_002436404.1 218887083 7173912 2469673..2471133 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sfu:Sfum_0643 two component, sigma54 specific, transcriptional regulator, fis family; Fis family transcriptional regulator 2471133 7173912 DvMF_1993 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436404.1 2469673 D 883 CDS YP_002436405.1 218887084 7173913 2471444..2472175 1 NC_011769.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: csa:Csal_1764 transcriptional regulator, GntR family; GntR family transcriptional regulator 2472175 7173913 DvMF_1994 Desulfovibrio vulgaris str. 'Miyazaki F' GntR family transcriptional regulator YP_002436405.1 2471444 D 883 CDS YP_002436406.1 218887085 7173914 complement(2472315..2473385) 1 NC_011769.1 PFAM: malate/L-lactate dehydrogenase; KEGG: mrd:Mrad2831_5976 malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase 2473385 7173914 DvMF_1995 Desulfovibrio vulgaris str. 'Miyazaki F' malate/L-lactate dehydrogenase YP_002436406.1 2472315 R 883 CDS YP_002436407.1 218887086 7173915 complement(2473689..2475722) 1 NC_011769.1 PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2475722 7173915 DvMF_1996 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002436407.1 2473689 R 883 CDS YP_002436408.1 218887087 7173916 complement(2476073..2477323) 1 NC_011769.1 KEGG: mta:Moth_1926 hypothetical protein; hypothetical protein 2477323 7173916 DvMF_1997 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436408.1 2476073 R 883 CDS YP_002436409.1 218887088 7173917 complement(2477442..2477903) 1 NC_011769.1 KEGG: dsy:DSY3247 hypothetical protein; hypothetical protein 2477903 7173917 DvMF_1998 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436409.1 2477442 R 883 CDS YP_002436410.1 218887089 7173918 complement(2477896..2479440) 1 NC_011769.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: dsy:DSY3248 hypothetical protein; hypothetical protein 2479440 7173918 DvMF_1999 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436410.1 2477896 R 883 CDS YP_002436411.1 218887090 7173919 complement(2479906..2480367) 1 NC_011769.1 KEGG: dsy:DSY3247 hypothetical protein; hypothetical protein 2480367 7173919 DvMF_2000 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436411.1 2479906 R 883 CDS YP_002436412.1 218887091 7173920 complement(2480360..2481904) 1 NC_011769.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: dsy:DSY3248 hypothetical protein; hypothetical protein 2481904 7173920 DvMF_2001 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436412.1 2480360 R 883 CDS YP_002436413.1 218887092 7173921 complement(2481968..2482930) 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: dsy:DSY3249 hypothetical protein; hypothetical protein 2482930 7173921 DvMF_2002 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436413.1 2481968 R 883 CDS YP_002436414.1 218887093 7173922 complement(2483297..2484460) 1 NC_011769.1 PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase; altronate dehydratase 2484460 7173922 DvMF_2003 Desulfovibrio vulgaris str. 'Miyazaki F' altronate dehydratase YP_002436414.1 2483297 R 883 CDS YP_002436415.1 218887094 7173923 complement(2484465..2484749) 1 NC_011769.1 KEGG: csa:Csal_1765 D-galactarate dehydratase/altronate hydrolase-like protein; D-galactarate dehydratase/altronate hydrolase-like protein 2484749 7173923 DvMF_2004 Desulfovibrio vulgaris str. 'Miyazaki F' D-galactarate dehydratase/altronate hydrolase-like protein YP_002436415.1 2484465 R 883 CDS YP_002436416.1 218887095 7173924 complement(2485775..2486938) 1 NC_011769.1 PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase; altronate dehydratase 2486938 7173924 DvMF_2005 Desulfovibrio vulgaris str. 'Miyazaki F' altronate dehydratase YP_002436416.1 2485775 R 883 CDS YP_002436417.1 218887096 7173925 complement(2486943..2487227) 1 NC_011769.1 KEGG: csa:Csal_1765 D-galactarate dehydratase/altronate hydrolase-like protein; D-galactarate dehydratase/altronate hydrolase-like protein 2487227 7173925 DvMF_2006 Desulfovibrio vulgaris str. 'Miyazaki F' D-galactarate dehydratase/altronate hydrolase-like protein YP_002436417.1 2486943 R 883 CDS YP_002436418.1 218887097 7173926 complement(2487516..2487932) 1 NC_011769.1 KEGG: dde:Dde_0387 hypothetical protein; hypothetical protein 2487932 7173926 DvMF_2007 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436418.1 2487516 R 883 CDS YP_002436419.1 218887098 7173927 complement(2488005..2488334) 1 NC_011769.1 KEGG: dde:Dde_0386 hypothetical protein; hypothetical protein 2488334 7173927 DvMF_2008 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436419.1 2488005 R 883 CDS YP_002436420.1 218887099 7173928 complement(2488545..2489330) 1 NC_011769.1 PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_0385 flagellar basal body-associated protein; flagellar basal body-associated protein FliL 2489330 7173928 DvMF_2009 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar basal body-associated protein FliL YP_002436420.1 2488545 R 883 CDS YP_002436421.1 218887100 7173929 complement(2489574..2489954) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_0384 response regulator receiver domain-containing protein; response regulator receiver protein 2489954 7173929 DvMF_2010 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436421.1 2489574 R 883 CDS YP_002436422.1 218887101 7173930 complement(2489985..2490782) 1 NC_011769.1 KEGG: dde:Dde_0383 sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma 28 subunit FliA/WhiG 2490782 7173930 DvMF_2011 Desulfovibrio vulgaris str. 'Miyazaki F' RNA polymerase sigma 28 subunit FliA/WhiG YP_002436422.1 2489985 R 883 CDS YP_002436423.1 218887102 7173931 complement(2490736..2491551) 1 NC_011769.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0382 flagellar synthesis regulator FleN; cobyrinic acid ac-diamide synthase 2491551 7173931 DvMF_2012 Desulfovibrio vulgaris str. 'Miyazaki F' cobyrinic acid ac-diamide synthase YP_002436423.1 2490736 R 883 CDS YP_002436424.1 218887103 7173932 complement(2491656..2492915) 1 NC_011769.1 KEGG: dde:Dde_0381 flagellar biosynthesis protein FlhF; flagellar biosynthesis protein FlhF 2492915 7173932 DvMF_2013 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar biosynthesis protein FlhF YP_002436424.1 2491656 R 883 CDS YP_002436425.1 218887104 7173933 complement(2492985..2495096) 1 NC_011769.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2495096 flhA 7173933 flhA Desulfovibrio vulgaris str. 'Miyazaki F' flagellar biosynthesis protein FlhA YP_002436425.1 2492985 R 883 CDS YP_002436426.1 218887105 7173934 complement(2495153..2496223) 1 NC_011769.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 2496223 flhB 7173934 flhB Desulfovibrio vulgaris str. 'Miyazaki F' flagellar biosynthesis protein FlhB YP_002436426.1 2495153 R 883 CDS YP_002436427.1 218887106 7173935 complement(2496304..2497098) 1 NC_011769.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: dde:Dde_0378 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR 2497098 7173935 DvMF_2016 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar biosynthetic protein FliR YP_002436427.1 2496304 R 883 CDS YP_002436428.1 218887107 7173936 2497245..2499437 1 NC_011769.1 TIGRFAM: sulfate transporter; PFAM: sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: mgm:Mmc1_1638 sulfate transporter; sulfate transporter 2499437 7173936 DvMF_2017 Desulfovibrio vulgaris str. 'Miyazaki F' sulfate transporter YP_002436428.1 2497245 D 883 CDS YP_002436429.1 218887108 7173937 2499434..2500591 1 NC_011769.1 KEGG: dde:Dde_0388 hypothetical protein; hypothetical protein 2500591 7173937 DvMF_2018 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436429.1 2499434 D 883 CDS YP_002436430.1 218887109 7173938 2500863..2501918 1 NC_011769.1 PFAM: dihydrouridine synthase; KEGG: dde:Dde_0389 dihydrouridine synthase family protein; dihydrouridine synthase 2501918 7173938 DvMF_2019 Desulfovibrio vulgaris str. 'Miyazaki F' dihydrouridine synthase YP_002436430.1 2500863 D 883 CDS YP_002436431.1 218887110 7173939 2501915..2502760 1 NC_011769.1 KEGG: dde:Dde_0390 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 2502760 7173939 DvMF_2020 Desulfovibrio vulgaris str. 'Miyazaki F' hydroxymethylbutenyl pyrophosphate reductase YP_002436431.1 2501915 D 883 CDS YP_002436432.1 218887111 7173940 2502889..2503839 1 NC_011769.1 PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_0391 response regulator receiver (CheY-like) modulated CheW protein; chemotaxis protein CheW 2503839 7173940 DvMF_2021 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheW YP_002436432.1 2502889 D 883 CDS YP_002436433.1 218887112 7173941 2504195..2505976 1 NC_011769.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: gbm:Gbem_0222 GntR family transcriptional regulator with aminotransferase domain; GntR family transcriptional regulator 2505976 7173941 DvMF_2022 Desulfovibrio vulgaris str. 'Miyazaki F' GntR family transcriptional regulator YP_002436433.1 2504195 D 883 CDS YP_002436434.1 218887113 7173942 complement(2506112..2506480) 1 NC_011769.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: gbm:Gbem_0223 pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase-related FMN-binding protein 2506480 7173942 DvMF_2023 Desulfovibrio vulgaris str. 'Miyazaki F' pyridoxamine 5'-phosphate oxidase-related FMN-binding protein YP_002436434.1 2506112 R 883 CDS YP_002436435.1 218887114 7173943 complement(2506764..2507945) 1 NC_011769.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: dde:Dde_0120 ribosomal large subunit pseudouridine synthase C; pseudouridine synthase 2507945 7173943 DvMF_2024 Desulfovibrio vulgaris str. 'Miyazaki F' pseudouridine synthase YP_002436435.1 2506764 R 883 CDS YP_002436436.1 218887115 7173944 complement(2508254..2509918) 1 NC_011769.1 KEGG: dde:Dde_0121 hypothetical protein; hypothetical protein 2509918 7173944 DvMF_2025 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436436.1 2508254 R 883 CDS YP_002436437.1 218887116 7173945 2510451..2511794 1 NC_011769.1 PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein; Fmu (Sun) domain-containing protein 2511794 7173945 DvMF_2026 Desulfovibrio vulgaris str. 'Miyazaki F' Fmu (Sun) domain-containing protein YP_002436437.1 2510451 D 883 CDS YP_002436438.1 218887117 7173946 complement(2512017..2512979) 1 NC_011769.1 PFAM: inositol monophosphatase; KEGG: dde:Dde_0123 3'(2'),5'-bisphosphate nucleotidase; inositol monophosphatase 2512979 7173946 DvMF_2027 Desulfovibrio vulgaris str. 'Miyazaki F' inositol monophosphatase YP_002436438.1 2512017 R 883 CDS YP_002436439.1 218887118 7173947 2513208..2513909 1 NC_011769.1 PFAM: NLP/P60 protein; KEGG: sfu:Sfum_2195 NLP/P60 protein; NLP/P60 protein 2513909 7173947 DvMF_2028 Desulfovibrio vulgaris str. 'Miyazaki F' NLP/P60 protein YP_002436439.1 2513208 D 883 CDS YP_002436440.1 218887119 7173948 complement(2514212..2514499) 1 NC_011769.1 PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_0125 histone-like DNA-binding protein; histone family protein DNA-binding protein 2514499 7173948 DvMF_2029 Desulfovibrio vulgaris str. 'Miyazaki F' histone family protein DNA-binding protein YP_002436440.1 2514212 R 883 CDS YP_002436441.1 218887120 7173949 2514765..2515484 1 NC_011769.1 KEGG: dde:Dde_0126 MerR family transcriptional regulator; MerR family transcriptional regulator 2515484 7173949 DvMF_2030 Desulfovibrio vulgaris str. 'Miyazaki F' MerR family transcriptional regulator YP_002436441.1 2514765 D 883 CDS YP_002436442.1 218887121 7173950 2516071..2518383 1 NC_011769.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2518383 7173950 DvMF_2031 Desulfovibrio vulgaris str. 'Miyazaki F' ribonucleotide-diphosphate reductase subunit alpha YP_002436442.1 2516071 D 883 CDS YP_002436443.1 218887122 7173951 2518527..2519369 1 NC_011769.1 KEGG: dde:Dde_0114 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase AAA; cell division ATP-binding protein FtsE 2519369 7173951 DvMF_2032 Desulfovibrio vulgaris str. 'Miyazaki F' cell division ATP-binding protein FtsE YP_002436443.1 2518527 D 883 CDS YP_002436444.1 218887123 7173952 2519369..2520271 1 NC_011769.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0115 cell division protein FtsX; hypothetical protein 2520271 7173952 DvMF_2033 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436444.1 2519369 D 883 CDS YP_002436445.1 218887124 7173953 2520611..2522278 1 NC_011769.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2522278 7173953 DvMF_2034 Desulfovibrio vulgaris str. 'Miyazaki F' dihydroxy-acid dehydratase YP_002436445.1 2520611 D 883 CDS YP_002436446.1 218887125 7173954 2522834..2525176 1 NC_011769.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2525176 7173954 DvMF_2035 Desulfovibrio vulgaris str. 'Miyazaki F' 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_002436446.1 2522834 D 883 CDS YP_002436447.1 218887126 7173955 2525539..2526345 1 NC_011769.1 PFAM: UbiE/COQ5 methyltransferase; methionine biosynthesis MetW protein; methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_0009 hypothetical protein; methyltransferase type 11 2526345 7173955 DvMF_2036 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase type 11 YP_002436447.1 2525539 D 883 CDS YP_002436448.1 218887127 7173956 2526655..2527935 1 NC_011769.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2527935 hisS 7173956 hisS Desulfovibrio vulgaris str. 'Miyazaki F' histidyl-tRNA synthetase YP_002436448.1 2526655 D 883 CDS YP_002436449.1 218887128 7173957 2528054..2529898 1 NC_011769.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2529898 aspS 7173957 aspS Desulfovibrio vulgaris str. 'Miyazaki F' aspartyl-tRNA synthetase YP_002436449.1 2528054 D 883 CDS YP_002436450.1 218887129 7173958 2530050..2530604 1 NC_011769.1 KEGG: dde:Dde_0013 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 2530604 7173958 DvMF_2039 Desulfovibrio vulgaris str. 'Miyazaki F' peptide deformylase YP_002436450.1 2530050 D 883 CDS YP_002436451.1 218887130 7173959 2530606..2531715 1 NC_011769.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: dde:Dde_0014 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 2531715 7173959 DvMF_2040 Desulfovibrio vulgaris str. 'Miyazaki F' methionyl-tRNA formyltransferase YP_002436451.1 2530606 D 883 CDS YP_002436452.1 218887131 7173960 2531921..2532985 1 NC_011769.1 PFAM: protein of unknown function DUF116; KEGG: dde:Dde_0015 hypothetical protein; hypothetical protein 2532985 7173960 DvMF_2041 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436452.1 2531921 D 883 CDS YP_002436453.1 218887132 7173961 2532982..2534574 1 NC_011769.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dde:Dde_0017 sun protein; NusB/RsmB/TIM44 2534574 7173961 DvMF_2042 Desulfovibrio vulgaris str. 'Miyazaki F' NusB/RsmB/TIM44 YP_002436453.1 2532982 D 883 CDS YP_002436454.1 218887133 7173962 complement(2534679..2535083) 1 NC_011769.1 KEGG: sfu:Sfum_2138 hypothetical protein; hypothetical protein 2535083 7173962 DvMF_2043 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436454.1 2534679 R 883 CDS YP_002436455.1 218887134 7173963 complement(2535429..2536454) 1 NC_011769.1 PFAM: PfkB domain protein; KEGG: dde:Dde_0028 D-alpha,beta-D-heptose 7-phosphate 1-kinase; PfkB domain-containing protein 2536454 7173963 DvMF_2044 Desulfovibrio vulgaris str. 'Miyazaki F' PfkB domain-containing protein YP_002436455.1 2535429 R 883 CDS YP_002436456.1 218887135 7173964 complement(2536517..2537449) 1 NC_011769.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dde:Dde_0029 chromosome segregation DNA-binding protein; parB-like partition protein 2537449 7173964 DvMF_2045 Desulfovibrio vulgaris str. 'Miyazaki F' parB-like partition protein YP_002436456.1 2536517 R 883 CDS YP_002436457.1 218887136 7173965 2537541..2537951 1 NC_011769.1 KEGG: dde:Dde_0030 hypothetical protein; hypothetical protein 2537951 7173965 DvMF_2046 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436457.1 2537541 D 883 CDS YP_002436458.1 218887137 7173966 complement(2537995..2538783) 1 NC_011769.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0031 chromosome segregation ATPase; cobyrinic acid ac-diamide synthase 2538783 7173966 DvMF_2047 Desulfovibrio vulgaris str. 'Miyazaki F' cobyrinic acid ac-diamide synthase YP_002436458.1 2537995 R 883 CDS YP_002436459.1 218887138 7173967 complement(2539423..2540430) 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_0033 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 2540430 7173967 DvMF_2048 Desulfovibrio vulgaris str. 'Miyazaki F' NAD-dependent epimerase/dehydratase YP_002436459.1 2539423 R 883 CDS YP_002436460.1 218887139 7173968 complement(2540819..2541568) 1 NC_011769.1 PFAM: band 7 protein; KEGG: dde:Dde_0036 SPFH domain-containing protein/band 7 family protein; hypothetical protein 2541568 7173968 DvMF_2049 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436460.1 2540819 R 883 CDS YP_002436461.1 218887140 7173969 complement(2542149..2543201) 1 NC_011769.1 KEGG: dde:Dde_0038 hypothetical protein; hypothetical protein 2543201 7173969 DvMF_2050 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436461.1 2542149 R 883 CDS YP_002436462.1 218887141 7173970 complement(2543183..2544430) 1 NC_011769.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: dde:Dde_0039 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 2544430 7173970 DvMF_2051 Desulfovibrio vulgaris str. 'Miyazaki F' phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase YP_002436462.1 2543183 R 883 CDS YP_002436463.1 218887142 7173971 complement(2544663..2545223) 1 NC_011769.1 KEGG: lip:LI0583 hypothetical protein; hypothetical protein 2545223 7173971 DvMF_2052 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436463.1 2544663 R 883 CDS YP_002436464.1 218887143 7173972 2545433..2546686 1 NC_011769.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2546686 queA 7173972 queA Desulfovibrio vulgaris str. 'Miyazaki F' S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_002436464.1 2545433 D 883 CDS YP_002436465.1 218887144 7173973 2547035..2547274 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, delta subunit; 4Fe-4S ferredoxin 2547274 7173973 DvMF_2054 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002436465.1 2547035 D 883 CDS YP_002436466.1 218887145 7173974 2547279..2548364 1 NC_011769.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 2548364 7173974 DvMF_2055 Desulfovibrio vulgaris str. 'Miyazaki F' 2-ketoisovalerate ferredoxin reductase YP_002436466.1 2547279 D 883 CDS YP_002436467.1 218887146 7173975 2548364..2549155 1 NC_011769.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; thiamine pyrophosphate TPP-binding domain-containing protein 2549155 7173975 DvMF_2056 Desulfovibrio vulgaris str. 'Miyazaki F' thiamine pyrophosphate TPP-binding domain-containing protein YP_002436467.1 2548364 D 883 CDS YP_002436468.1 218887147 7173976 2549155..2549697 1 NC_011769.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, subunit gamma; pyruvate ferredoxin/flavodoxin oxidoreductase 2549697 7173976 DvMF_2057 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate ferredoxin/flavodoxin oxidoreductase YP_002436468.1 2549155 D 883 CDS YP_002436469.1 218887148 7173977 complement(2549908..2555493) 1 NC_011769.1 KEGG: rec:RHECIAT_CH0003310 superfamily I DNA and RNA helicase protein; superfamily I DNA and RNA helicase protein 2555493 7173977 DvMF_2058 Desulfovibrio vulgaris str. 'Miyazaki F' superfamily I DNA and RNA helicase protein YP_002436469.1 2549908 R 883 CDS YP_002436470.1 218887149 7173978 2555775..2556065 1 NC_011769.1 KEGG: mmw:Mmwyl1_1978 hypothetical protein; hypothetical protein 2556065 7173978 DvMF_2059 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436470.1 2555775 D 883 CDS YP_002436471.1 218887150 7173979 2556443..2556850 1 NC_011769.1 PFAM: small multidrug resistance protein; KEGG: dde:Dde_2406 SMR family multidrug efflux pump; small multidrug resistance protein 2556850 7173979 DvMF_2060 Desulfovibrio vulgaris str. 'Miyazaki F' small multidrug resistance protein YP_002436471.1 2556443 D 883 CDS YP_002436472.1 218887151 7173980 2556847..2557176 1 NC_011769.1 PFAM: small multidrug resistance protein; KEGG: dde:Dde_2405 SMR family multidrug efflux pump; small multidrug resistance protein 2557176 7173980 DvMF_2061 Desulfovibrio vulgaris str. 'Miyazaki F' small multidrug resistance protein YP_002436472.1 2556847 D 883 CDS YP_002436473.1 218887152 7173981 complement(2557436..2558158) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_2109 ABC transporter; ABC transporter 2558158 7173981 DvMF_2062 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436473.1 2557436 R 883 CDS YP_002436474.1 218887153 7173982 complement(2558427..2559620) 1 NC_011769.1 PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_1553 protein of unknown function DUF214; hypothetical protein 2559620 7173982 DvMF_2063 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436474.1 2558427 R 883 CDS YP_002436475.1 218887154 7173983 complement(2559794..2560255) 1 NC_011769.1 KEGG: gbm:Gbem_1096 hypothetical protein; hypothetical protein 2560255 7173983 DvMF_2064 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436475.1 2559794 R 883 CDS YP_002436476.1 218887155 7173984 2560483..2560947 1 NC_011769.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dde:Dde_0414 hypothetical protein; ybaK/ebsC protein 2560947 7173984 DvMF_2065 Desulfovibrio vulgaris str. 'Miyazaki F' ybaK/ebsC protein YP_002436476.1 2560483 D 883 CDS YP_002436477.1 218887156 7173985 complement(2561057..2563573) 1 NC_011769.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: sfu:Sfum_3773 heavy metal translocating P-type ATPase; ATPase P 2563573 7173985 DvMF_2066 Desulfovibrio vulgaris str. 'Miyazaki F' ATPase P YP_002436477.1 2561057 R 883 CDS YP_002436478.1 218887157 7173986 complement(2564117..2565424) 1 NC_011769.1 KEGG: dde:Dde_0108 hypothetical protein; hypothetical protein 2565424 7173986 DvMF_2067 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436478.1 2564117 R 883 CDS YP_002436479.1 218887158 7173987 complement(2565865..2566827) 1 NC_011769.1 PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_0107 lipoprotein; peptidase M48 Ste24p 2566827 7173987 DvMF_2068 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M48 Ste24p YP_002436479.1 2565865 R 883 CDS YP_002436480.1 218887159 7173988 2567011..2569287 1 NC_011769.1 KEGG: dde:Dde_0106 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I 2569287 7173988 DvMF_2069 Desulfovibrio vulgaris str. 'Miyazaki F' DNA topoisomerase I YP_002436480.1 2567011 D 883 CDS YP_002436481.1 218887160 7173989 2569907..2571382 1 NC_011769.1 KEGG: pfl:PFL_0783 pesticin domain-containing protein; hypothetical protein 2571382 7173989 DvMF_2070 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436481.1 2569907 D 883 CDS YP_002436482.1 218887161 7173990 2571379..2572233 1 NC_011769.1 hypothetical protein 2572233 7173990 DvMF_2071 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436482.1 2571379 D 883 CDS YP_002436483.1 218887162 7173991 2572308..2573084 1 NC_011769.1 hypothetical protein 2573084 7173991 DvMF_2072 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436483.1 2572308 D 883 CDS YP_002436484.1 218887163 7173992 complement(2573304..2574506) 1 NC_011769.1 KEGG: dac:Daci_0170 Fe-S oxidoreductase; hypothetical protein 2574506 7173992 DvMF_2073 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436484.1 2573304 R 883 CDS YP_002436485.1 218887164 7173993 complement(2574675..2575799) 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: chy:CHY_2608 glycosyl transferase; family 2 glycosyl transferase 2575799 7173993 DvMF_2074 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002436485.1 2574675 R 883 CDS YP_002436486.1 218887165 7173994 2576452..2578038 1 NC_011769.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; fumarate hydratase class II; KEGG: dde:Dde_0240 fumarate hydratase; class II fumarate hydratase 2578038 7173994 DvMF_2075 Desulfovibrio vulgaris str. 'Miyazaki F' class II fumarate hydratase YP_002436486.1 2576452 D 883 CDS YP_002436487.1 218887166 7173995 2578610..2579161 1 NC_011769.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: dde:Dde_0237 Gpr1/Fun34/YaaH family protein; GPR1/FUN34/yaaH family protein 2579161 7173995 DvMF_2076 Desulfovibrio vulgaris str. 'Miyazaki F' GPR1/FUN34/yaaH family protein YP_002436487.1 2578610 D 883 CDS YP_002436488.1 218887167 7173996 complement(2580554..2582362) 1 NC_011769.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0210 AhpF family protein/thioredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2582362 7173996 DvMF_2077 Desulfovibrio vulgaris str. 'Miyazaki F' FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002436488.1 2580554 R 883 CDS YP_002436489.1 218887168 7173997 2582664..2583170 1 NC_011769.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dde:Dde_0209 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 2583170 7173997 DvMF_2078 Desulfovibrio vulgaris str. 'Miyazaki F' cyclophilin type peptidyl-prolyl cis-trans isomerase YP_002436489.1 2582664 D 883 CDS YP_002436490.1 218887169 7173998 2583531..2585348 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: dde:Dde_0236 hypothetical protein; NmrA family protein 2585348 7173998 DvMF_2079 Desulfovibrio vulgaris str. 'Miyazaki F' NmrA family protein YP_002436490.1 2583531 D 883 CDS YP_002436491.1 218887170 7173999 complement(2585908..2587233) 1 NC_011769.1 PFAM: peptidase M23; KEGG: dde:Dde_3784 M24/M37 family peptidase; peptidase M23 2587233 7173999 DvMF_2080 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M23 YP_002436491.1 2585908 R 883 CDS YP_002436492.1 218887171 7174000 2588354..2589688 1 NC_011769.1 KEGG: dde:Dde_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: replication initiation factor DnaA; Chromosomal replication initiator DnaA; SMART: ATPase AAA; chromosomal replication initiator protein DnaA 2589688 7174000 DvMF_2081 Desulfovibrio vulgaris str. 'Miyazaki F' chromosomal replication initiator protein DnaA YP_002436492.1 2588354 D 883 CDS YP_002436493.1 218887172 7174001 2589828..2590994 1 NC_011769.1 KEGG: dde:Dde_0002 DNA polymerase III beta subunit; TIGRFAM: DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 2590994 7174001 DvMF_2082 Desulfovibrio vulgaris str. 'Miyazaki F' DNA polymerase III subunit beta YP_002436493.1 2589828 D 883 CDS YP_002436494.1 218887173 7174002 2591326..2593722 1 NC_011769.1 KEGG: dde:Dde_0003 DNA gyrase subunit B; TIGRFAM: DNA gyrase subunit beta; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; DNA topoisomerase type IIsubunit alpha B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit beta 2593722 7174002 DvMF_2083 Desulfovibrio vulgaris str. 'Miyazaki F' DNA gyrase subunit beta YP_002436494.1 2591326 D 883 CDS YP_002436495.1 218887174 7174003 2593967..2596405 1 NC_011769.1 KEGG: dde:Dde_0004 DNA gyrase subunit A; TIGRFAM: DNA gyrase subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit alpha 2596405 7174003 DvMF_2084 Desulfovibrio vulgaris str. 'Miyazaki F' DNA gyrase subunit alpha YP_002436495.1 2593967 D 883 CDS YP_002436496.1 218887175 7174004 2596594..2597433 1 NC_011769.1 KEGG: dde:Dde_0005 lipoprotein; lipoprotein 2597433 7174004 DvMF_2085 Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein YP_002436496.1 2596594 D 883 CDS YP_002436497.1 218887176 7174005 complement(2597678..2598139) 1 NC_011769.1 PFAM: UspA domain protein; KEGG: dde:Dde_0098 universal stress protein; UspA domain-containing protein 2598139 7174005 DvMF_2086 Desulfovibrio vulgaris str. 'Miyazaki F' UspA domain-containing protein YP_002436497.1 2597678 R 883 CDS YP_002436498.1 218887177 7174006 complement(2598392..2599807) 1 NC_011769.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2599807 asnC 7174006 asnC Desulfovibrio vulgaris str. 'Miyazaki F' asparaginyl-tRNA synthetase YP_002436498.1 2598392 R 883 CDS YP_002436499.1 218887178 7174007 2600156..2600329 1 NC_011769.1 KEGG: dde:Dde_0885 hypothetical protein; hypothetical protein 2600329 7174007 DvMF_2088 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436499.1 2600156 D 883 CDS YP_002436500.1 218887179 7174009 complement(2601099..2601707) 1 NC_011769.1 PFAM: rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3337 nigerythrin; rubrerythrin 2601707 7174009 DvMF_2089 Desulfovibrio vulgaris str. 'Miyazaki F' rubrerythrin YP_002436500.1 2601099 R 883 CDS YP_002436501.1 218887180 7174010 2602032..2603102 1 NC_011769.1 KEGG: gsu:GSU0757 lipoprotein; hypothetical protein 2603102 7174010 DvMF_2090 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436501.1 2602032 D 883 CDS YP_002436502.1 218887181 7174011 2603601..2606354 1 NC_011769.1 KEGG: gur:Gura_2632 hypothetical protein; hypothetical protein 2606354 7174011 DvMF_2091 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436502.1 2603601 D 883 CDS YP_002436503.1 218887182 7174012 2606731..2608170 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: drm:Dred_1452 conserved hypothetical protein 698; hypothetical protein 2608170 7174012 DvMF_2092 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436503.1 2606731 D 883 CDS YP_002436504.1 218887183 7174013 2608267..2608440 1 NC_011769.1 KEGG: bbt:BBta_2157 hypothetical protein; hypothetical protein 2608440 7174013 DvMF_2093 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436504.1 2608267 D 883 CDS YP_002436505.1 218887184 7174014 2608540..2611158 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 2611158 7174014 DvMF_2094 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002436505.1 2608540 D 883 CDS YP_002436506.1 218887185 7174015 2611155..2612570 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0879 two component Fis family transcriptional regulator; Fis family transcriptional regulator 2612570 7174015 DvMF_2095 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436506.1 2611155 D 883 CDS YP_002436507.1 218887186 7174016 2612590..2612928 1 NC_011769.1 hypothetical protein 2612928 7174016 DvMF_2096 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436507.1 2612590 D 883 CDS YP_002436508.1 218887187 7174017 2613487..2614197 1 NC_011769.1 PFAM: NADPH-dependent FMN reductase; KEGG: mba:Mbar_A2580 iron-sulfur flavoprotein; NADPH-dependent FMN reductase 2614197 7174017 DvMF_2097 Desulfovibrio vulgaris str. 'Miyazaki F' NADPH-dependent FMN reductase YP_002436508.1 2613487 D 883 CDS YP_002436509.1 218887188 7174018 2614478..2615878 1 NC_011769.1 PFAM: major facilitator superfamily MFS_1; KEGG: mba:Mbar_A3306 efflux PumP antibiotic resistance protein; major facilitator superfamily protein 2615878 7174018 DvMF_2098 Desulfovibrio vulgaris str. 'Miyazaki F' major facilitator superfamily protein YP_002436509.1 2614478 D 883 CDS YP_002436510.1 218887189 7174019 complement(2616009..2617352) 1 NC_011769.1 TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: dde:Dde_0104 L-glutamine synthetase; glutamine synthetase 2617352 7174019 DvMF_2099 Desulfovibrio vulgaris str. 'Miyazaki F' glutamine synthetase YP_002436510.1 2616009 R 883 CDS YP_002436511.1 218887190 7174020 2617859..2618833 1 NC_011769.1 KEGG: ang:An12g06380 hypothetical protein Pfam: Collagen PROSITE: ALA_RICH ASP_RICH GLY_RICH SER_RICH; hypothetical protein 2618833 7174020 DvMF_2100 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436511.1 2617859 D 883 CDS YP_002436512.1 218887191 7174021 2619163..2620602 1 NC_011769.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_3407 major facilitator transporter; major facilitator superfamily protein 2620602 7174021 DvMF_2101 Desulfovibrio vulgaris str. 'Miyazaki F' major facilitator superfamily protein YP_002436512.1 2619163 D 883 CDS YP_002436513.1 218887192 7174022 complement(2620753..2621622) 1 NC_011769.1 PFAM: UspA domain protein; KEGG: tbd:Tbd_2614 universal stress protein; UspA domain-containing protein 2621622 7174022 DvMF_2102 Desulfovibrio vulgaris str. 'Miyazaki F' UspA domain-containing protein YP_002436513.1 2620753 R 883 CDS YP_002436514.1 218887193 7174023 complement(2621609..2622667) 1 NC_011769.1 PFAM: protein of unknown function DUF81; KEGG: tbd:Tbd_2613 hypothetical protein; hypothetical protein 2622667 7174023 DvMF_2103 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436514.1 2621609 R 883 CDS YP_002436515.1 218887194 7174024 complement(2622691..2623011) 1 NC_011769.1 KEGG: tbd:Tbd_2612 hypothetical protein; hypothetical protein 2623011 7174024 DvMF_2104 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436515.1 2622691 R 883 CDS YP_002436516.1 218887195 7174025 complement(2623089..2623646) 1 NC_011769.1 KEGG: tbd:Tbd_2614 universal stress protein; hypothetical protein 2623646 7174025 DvMF_2105 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436516.1 2623089 R 883 CDS YP_002436517.1 218887196 7174026 complement(2623737..2623976) 1 NC_011769.1 hypothetical protein 2623976 7174026 DvMF_2106 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436517.1 2623737 R 883 CDS YP_002436518.1 218887197 7174027 2624260..2626566 1 NC_011769.1 KEGG: dola:16964; PFAM: response regulator receiver; AAA ATPase central domain protein; peptidase S16; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; response regulator receiver protein 2626566 7174027 DvMF_2107 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436518.1 2624260 D 883 CDS YP_002436519.1 218887198 7174028 2626554..2628242 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dol:Dole_2392 histidine kinase; integral membrane sensor signal transduction histidine kinase 2628242 7174028 DvMF_2108 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002436519.1 2626554 D 883 CDS YP_002436520.1 218887199 7174029 2628239..2629786 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: mxa:MXAN_2516 sigma-54 dependent DNA-binding response regulator; Fis family transcriptional regulator 2629786 7174029 DvMF_2109 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436520.1 2628239 D 883 CDS YP_002436521.1 218887200 7174030 2630115..2631065 1 NC_011769.1 KEGG: dde:Dde_3778 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 2631065 7174030 DvMF_2110 Desulfovibrio vulgaris str. 'Miyazaki F' oligopeptide/dipeptide ABC transporter ATPase YP_002436521.1 2630115 D 883 CDS YP_002436522.1 218887201 7174031 2631458..2631952 1 NC_011769.1 KEGG: dde:Dde_0060 hypothetical protein; hypothetical protein 2631952 7174031 DvMF_2111 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436522.1 2631458 D 883 CDS YP_002436523.1 218887202 7174032 complement(2632386..2633303) 1 NC_011769.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: dde:Dde_0059 ADP-ribosylglycohydrolase family protein; ADP-ribosylation/crystallin J1 2633303 7174032 DvMF_2112 Desulfovibrio vulgaris str. 'Miyazaki F' ADP-ribosylation/crystallin J1 YP_002436523.1 2632386 R 883 CDS YP_002436524.1 218887203 7174033 complement(2633693..2633878) 1 NC_011769.1 hypothetical protein 2633878 7174033 DvMF_2113 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436524.1 2633693 R 883 CDS YP_002436525.1 218887204 7174034 2634130..2634861 1 NC_011769.1 PFAM: rRNA methylase; KEGG: dde:Dde_0095 methyltransferase (); rRNA methylase 2634861 7174034 DvMF_2114 Desulfovibrio vulgaris str. 'Miyazaki F' rRNA methylase YP_002436525.1 2634130 D 883 CDS YP_002436526.1 218887205 7174035 2635097..2635339 1 NC_011769.1 KEGG: dde:Dde_0096 hypothetical protein; hypothetical protein 2635339 7174035 DvMF_2115 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436526.1 2635097 D 883 CDS YP_002436527.1 218887206 7174036 complement(2635448..2635906) 1 NC_011769.1 KEGG: lxx:Lxx18120 two-component system, regulatory protein; two-component system, regulatory protein 2635906 7174036 DvMF_2116 Desulfovibrio vulgaris str. 'Miyazaki F' two-component system, regulatory protein YP_002436527.1 2635448 R 883 CDS YP_002436528.1 218887207 7174037 complement(2636166..2636789) 1 NC_011769.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3772 hypothetical protein; hypothetical protein 2636789 7174037 DvMF_2117 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436528.1 2636166 R 883 CDS YP_002436529.1 218887208 7174038 complement(2636779..2637171) 1 NC_011769.1 KEGG: dde:Dde_3773 hypothetical protein; hypothetical protein 2637171 7174038 DvMF_2118 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436529.1 2636779 R 883 CDS YP_002436530.1 218887209 7174039 complement(2637174..2637842) 1 NC_011769.1 KEGG: dde:Dde_3774 hypothetical protein; hypothetical protein 2637842 7174039 DvMF_2119 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436530.1 2637174 R 883 CDS YP_002436531.1 218887210 7174040 complement(2638312..2638500) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3775 ferredoxin I; 4Fe-4S ferredoxin 2638500 7174040 DvMF_2120 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002436531.1 2638312 R 883 CDS YP_002436532.1 218887211 7174041 complement(2638796..2640373) 1 NC_011769.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_3776 PDZ/DHR/GLGF; 2-alkenal reductase 2640373 7174041 DvMF_2121 Desulfovibrio vulgaris str. 'Miyazaki F' 2-alkenal reductase YP_002436532.1 2638796 R 883 CDS YP_002436533.1 218887212 7174042 2640719..2641798 1 NC_011769.1 KEGG: dde:Dde_3777 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2641798 7174042 DvMF_2122 Desulfovibrio vulgaris str. 'Miyazaki F' nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_002436533.1 2640719 D 883 CDS YP_002436534.1 218887213 7174043 complement(2642183..2643145) 1 NC_011769.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 2643145 7174043 DvMF_2123 Desulfovibrio vulgaris str. 'Miyazaki F' chromosome replication initiation inhibitor protein YP_002436534.1 2642183 R 883 CDS YP_002436535.1 218887214 7174044 2643382..2644011 1 NC_011769.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: dde:Dde_3475 L-lysine exporter; lysine exporter protein LysE/YggA 2644011 7174044 DvMF_2124 Desulfovibrio vulgaris str. 'Miyazaki F' lysine exporter protein LysE/YggA YP_002436535.1 2643382 D 883 CDS YP_002436536.1 218887215 7174045 complement(2644383..2645978) 1 NC_011769.1 PFAM: helicase; DbpA RNA-binding domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases; KEGG: dde:Dde_0152 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 2645978 7174045 DvMF_2125 Desulfovibrio vulgaris str. 'Miyazaki F' DEAD/DEAH box helicase YP_002436536.1 2644383 R 883 CDS YP_002436537.1 218887216 7174046 complement(2645981..2646298) 1 NC_011769.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: pnu:Pnuc_0446 excinuclease ABC subunit C; excinuclease ABC C subunit domain protein 2646298 7174046 DvMF_2126 Desulfovibrio vulgaris str. 'Miyazaki F' excinuclease ABC C subunit domain protein YP_002436537.1 2645981 R 883 CDS YP_002436538.1 218887217 7174047 complement(2646578..2647318) 1 NC_011769.1 KEGG: dde:Dde_0151 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2647318 7174047 DvMF_2127 Desulfovibrio vulgaris str. 'Miyazaki F' metallo-beta-lactamase family protein YP_002436538.1 2646578 R 883 CDS YP_002436539.1 218887218 7174048 complement(2647644..2648234) 1 NC_011769.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: dde:Dde_0150 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2648234 7174048 DvMF_2128 Desulfovibrio vulgaris str. 'Miyazaki F' 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002436539.1 2647644 R 883 CDS YP_002436540.1 218887219 7174050 2649696..2651351 1 NC_011769.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: chy:CHY_0431 L-lactate/glycolate permease; L-lactate transport 2651351 7174050 DvMF_2129 Desulfovibrio vulgaris str. 'Miyazaki F' L-lactate transport YP_002436540.1 2649696 D 883 CDS YP_002436541.1 218887220 7174051 complement(2652194..2652811) 1 NC_011769.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: pau:PA14_69310 LysE family efflux protein; lysine exporter protein LysE/YggA 2652811 7174051 DvMF_2130 Desulfovibrio vulgaris str. 'Miyazaki F' lysine exporter protein LysE/YggA YP_002436541.1 2652194 R 883 CDS YP_002436542.1 218887221 7174053 2653517..2654314 1 NC_011769.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 2654314 7174053 DvMF_2131 Desulfovibrio vulgaris str. 'Miyazaki F' prolipoprotein diacylglyceryl transferase YP_002436542.1 2653517 D 883 CDS YP_002436543.1 218887222 7174054 2654729..2654947 1 NC_011769.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2654947 infA 7174054 infA Desulfovibrio vulgaris str. 'Miyazaki F' translation initiation factor IF-1 YP_002436543.1 2654729 D 883 CDS YP_002436544.1 218887223 7174055 complement(2655462..2657498) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_3782 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 2657498 7174055 DvMF_2133 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002436544.1 2655462 R 883 CDS YP_002436545.1 218887224 7174056 complement(2657611..2658819) 1 NC_011769.1 KEGG: dde:Dde_3779 MerR family transcriptional regulator; MerR family transcriptional regulator 2658819 7174056 DvMF_2134 Desulfovibrio vulgaris str. 'Miyazaki F' MerR family transcriptional regulator YP_002436545.1 2657611 R 883 CDS YP_002436546.1 218887225 7174057 2659395..2660492 1 NC_011769.1 TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_3447 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP 2660492 7174057 DvMF_2135 Desulfovibrio vulgaris str. 'Miyazaki F' TRAP dicarboxylate transporter subunit DctP YP_002436546.1 2659395 D 883 CDS YP_002436547.1 218887226 7174058 2660489..2661226 1 NC_011769.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pde:Pden_3481 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter DctQ component 2661226 7174058 DvMF_2136 Desulfovibrio vulgaris str. 'Miyazaki F' tripartite ATP-independent periplasmic transporter DctQ component YP_002436547.1 2660489 D 883 CDS YP_002436548.1 218887227 7174059 2661228..2662511 1 NC_011769.1 TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: bbr:BB1744 hypothetical protein; TRAP dicarboxylate transporter subunit DctM 2662511 7174059 DvMF_2137 Desulfovibrio vulgaris str. 'Miyazaki F' TRAP dicarboxylate transporter subunit DctM YP_002436548.1 2661228 D 883 CDS YP_002436549.1 218887228 7174060 complement(2662566..2663579) 1 NC_011769.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: npu:Npun_F4963 transcriptional regulator, LysR family; LysR family transcriptional regulator 2663579 7174060 DvMF_2138 Desulfovibrio vulgaris str. 'Miyazaki F' LysR family transcriptional regulator YP_002436549.1 2662566 R 883 CDS YP_002436550.1 218887229 7174061 2663770..2663901 1 NC_011769.1 hypothetical protein 2663901 7174061 DvMF_2139 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436550.1 2663770 D 883 CDS YP_002436551.1 218887230 7174062 2664205..2664789 1 NC_011769.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: dde:Dde_1618 flavodoxin-like fold domain-containing protein; NAD(P)H dehydrogenase (quinone) 2664789 7174062 DvMF_2140 Desulfovibrio vulgaris str. 'Miyazaki F' NAD(P)H dehydrogenase (quinone) YP_002436551.1 2664205 D 883 CDS YP_002436552.1 218887231 7174063 complement(2664868..2666997) 1 NC_011769.1 PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase; peptidase U32 2666997 7174063 DvMF_2141 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase U32 YP_002436552.1 2664868 R 883 CDS YP_002436553.1 218887232 7174064 2668098..2668967 1 NC_011769.1 KEGG: dde:Dde_0057 dihydroorotate oxidase B, electron transfer subunit; dihydroorotate oxidase B, electron transfer subunit 2668967 7174064 DvMF_2142 Desulfovibrio vulgaris str. 'Miyazaki F' dihydroorotate oxidase B, electron transfer subunit YP_002436553.1 2668098 D 883 CDS YP_002436554.1 218887233 7174065 2669027..2669953 1 NC_011769.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: dde:Dde_0056 dihydroorotate oxidase B, catalytic subunit; dihydroorotate dehydrogenase 2669953 7174065 DvMF_2143 Desulfovibrio vulgaris str. 'Miyazaki F' dihydroorotate dehydrogenase YP_002436554.1 2669027 D 883 CDS YP_002436555.1 218887234 7174066 complement(2670048..2670587) 1 NC_011769.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mbb:BCG_0971 hypothetical protein; N-acetyltransferase GCN5 2670587 7174066 DvMF_2144 Desulfovibrio vulgaris str. 'Miyazaki F' N-acetyltransferase GCN5 YP_002436555.1 2670048 R 883 CDS YP_002436556.1 218887235 7174067 complement(2670584..2670856) 1 NC_011769.1 PFAM: protein of unknown function DUF1778; KEGG: neu:NE1104 hypothetical protein; hypothetical protein 2670856 7174067 DvMF_2145 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436556.1 2670584 R 883 CDS YP_002436557.1 218887236 7174068 complement(2671182..2674223) 1 NC_011769.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; aldehyde dehydrogenase_; KEGG: dde:Dde_0054 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 2674223 7174068 DvMF_2146 Desulfovibrio vulgaris str. 'Miyazaki F' delta-1-pyrroline-5-carboxylate dehydrogenase YP_002436557.1 2671182 R 883 CDS YP_002436558.1 218887237 7174069 complement(2674692..2675231) 1 NC_011769.1 KEGG: dde:Dde_0111 zinc resistance-associated protein; zinc resistance-associated protein 2675231 7174069 DvMF_2147 Desulfovibrio vulgaris str. 'Miyazaki F' zinc resistance-associated protein YP_002436558.1 2674692 R 883 CDS YP_002436559.1 218887238 7174070 2675567..2677756 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_0110 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 2677756 7174070 DvMF_2148 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002436559.1 2675567 D 883 CDS YP_002436560.1 218887239 7174071 2677753..2679186 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0109 two component Fis family transcriptional regulator; Fis family transcriptional regulator 2679186 7174071 DvMF_2149 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436560.1 2677753 D 883 CDS YP_002436561.1 218887240 7174072 complement(2679362..2680270) 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_3636 glycosyl transferase; family 2 glycosyl transferase 2680270 7174072 DvMF_2150 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002436561.1 2679362 R 883 CDS YP_002436562.1 218887241 7174073 complement(2680580..2681272) 1 NC_011769.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: rru:Rru_A2130 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 2681272 7174073 DvMF_2151 Desulfovibrio vulgaris str. 'Miyazaki F' lysine exporter protein LysE/YggA YP_002436562.1 2680580 R 883 CDS YP_002436563.1 218887242 7174074 2681821..2682255 1 NC_011769.1 PFAM: thioesterase superfamily protein; KEGG: rci:LRC474 phenylacetic acid degradation protein; thioesterase superfamily protein 2682255 7174074 DvMF_2152 Desulfovibrio vulgaris str. 'Miyazaki F' thioesterase superfamily protein YP_002436563.1 2681821 D 883 CDS YP_002436564.1 218887243 7174075 2682313..2684127 1 NC_011769.1 KEGG: dde:Dde_1552 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: ATPase AAA; Fis family transcriptional regulator 2684127 7174075 DvMF_2153 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436564.1 2682313 D 883 CDS YP_002436565.1 218887244 7174076 2684493..2685608 1 NC_011769.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dde:Dde_1553 L-alanine dehydrogenase; alanine dehydrogenase 2685608 7174076 DvMF_2154 Desulfovibrio vulgaris str. 'Miyazaki F' alanine dehydrogenase YP_002436565.1 2684493 D 883 CDS YP_002436566.1 218887245 7174077 complement(2685836..2687143) 1 NC_011769.1 PFAM: ABC transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter; ABC transporter 2687143 7174077 DvMF_2155 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436566.1 2685836 R 883 CDS YP_002436567.1 218887246 7174078 complement(2687153..2690473) 1 NC_011769.1 PFAM: ABC transporter; ABC-2 type transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_2391 ABC transporter; ABC transporter 2690473 7174078 DvMF_2156 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436567.1 2687153 R 883 CDS YP_002436568.1 218887247 7174079 complement(2690470..2691543) 1 NC_011769.1 PFAM: secretion protein HlyD; KEGG: rpc:RPC_3037 secretion protein HlyD; secretion protein HlyD 2691543 7174079 DvMF_2157 Desulfovibrio vulgaris str. 'Miyazaki F' secretion protein HlyD YP_002436568.1 2690470 R 883 CDS YP_002436569.1 218887248 7174080 2691680..2692414 1 NC_011769.1 PFAM: regulatory protein TetR; transcriptional regulator TetR; KEGG: pfl:PFL_5951 TetR family transcriptional regulator; TetR family transcriptional regulator 2692414 7174080 DvMF_2158 Desulfovibrio vulgaris str. 'Miyazaki F' TetR family transcriptional regulator YP_002436569.1 2691680 D 883 CDS YP_002436570.1 218887249 7174081 2692492..2694081 1 NC_011769.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_2809 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system outer membrane lipoprotein 2694081 7174081 DvMF_2159 Desulfovibrio vulgaris str. 'Miyazaki F' NodT family RND efflux system outer membrane lipoprotein YP_002436570.1 2692492 D 883 CDS YP_002436571.1 218887250 7174082 2694278..2694454 1 NC_011769.1 hypothetical protein 2694454 7174082 DvMF_2160 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436571.1 2694278 D 883 CDS YP_002436572.1 218887251 7174083 complement(2694597..2695127) 1 NC_011769.1 PFAM: regulatory protein MarR; KEGG: psp:PSPPH_1519 MarR family transcriptional regulator; MarR family transcriptional regulator 2695127 7174083 DvMF_2161 Desulfovibrio vulgaris str. 'Miyazaki F' MarR family transcriptional regulator YP_002436572.1 2694597 R 883 CDS YP_002436573.1 218887252 7174084 complement(2695124..2696593) 1 NC_011769.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cvi:CV_0433 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 2696593 7174084 DvMF_2162 Desulfovibrio vulgaris str. 'Miyazaki F' NodT family RND efflux system outer membrane lipoprotein YP_002436573.1 2695124 R 883 CDS YP_002436574.1 218887253 7174085 complement(2696715..2699951) 1 NC_011769.1 TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cvi:CV_0434 acriflavin resistance protein D; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2699951 7174085 DvMF_2163 Desulfovibrio vulgaris str. 'Miyazaki F' hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_002436574.1 2696715 R 883 CDS YP_002436575.1 218887254 7174086 complement(2699976..2701193) 1 NC_011769.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cvi:CV_0435 multidrug efflux membrane permease; RND family efflux transporter MFP subunit 2701193 7174086 DvMF_2164 Desulfovibrio vulgaris str. 'Miyazaki F' RND family efflux transporter MFP subunit YP_002436575.1 2699976 R 883 CDS YP_002436576.1 218887255 7174087 complement(2701562..2702353) 1 NC_011769.1 PFAM: regulatory protein TetR; transcriptional regulator TetR; KEGG: sfu:Sfum_3173 TetR family transcriptional regulator; TetR family transcriptional regulator 2702353 7174087 DvMF_2165 Desulfovibrio vulgaris str. 'Miyazaki F' TetR family transcriptional regulator YP_002436576.1 2701562 R 883 CDS YP_002436577.1 218887256 7174088 complement(2702663..2703508) 1 NC_011769.1 PFAM: protein of unknown function DUF169; KEGG: glo:Glov_1444 protein of unknown function DUF169; hypothetical protein 2703508 7174088 DvMF_2166 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436577.1 2702663 R 883 CDS YP_002436578.1 218887257 7174089 complement(2703630..2704115) 1 NC_011769.1 PFAM: regulatory protein MarR; KEGG: dsy:DSY3432 hypothetical protein; MarR family transcriptional regulator 2704115 7174089 DvMF_2167 Desulfovibrio vulgaris str. 'Miyazaki F' MarR family transcriptional regulator YP_002436578.1 2703630 R 883 CDS YP_002436579.1 218887258 7174090 complement(2704320..2704748) 1 NC_011769.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: dde:Dde_3660 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 2704748 7174090 DvMF_2168 Desulfovibrio vulgaris str. 'Miyazaki F' TraR/DksA family transcriptional regulator YP_002436579.1 2704320 R 883 CDS YP_002436580.1 218887259 7174091 2705195..2707183 1 NC_011769.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: dde:Dde_3661 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2707183 7174091 DvMF_2169 Desulfovibrio vulgaris str. 'Miyazaki F' phospholipid/glycerol acyltransferase YP_002436580.1 2705195 D 883 CDS YP_002436581.1 218887260 7174092 2707514..2707936 1 NC_011769.1 PFAM: protein of unknown function DUF523; KEGG: dde:Dde_3662 hypothetical protein; hypothetical protein 2707936 7174092 DvMF_2170 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436581.1 2707514 D 883 CDS YP_002436582.1 218887261 7174093 2709455..2709613 1 NC_011769.1 KEGG: dde:Dde_3664 hypothetical protein; hypothetical protein 2709613 7174093 DvMF_2171 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436582.1 2709455 D 883 CDS YP_002436583.1 218887262 7174094 complement(2709762..2710565) 1 NC_011769.1 PFAM: DSBA oxidoreductase; KEGG: dde:Dde_0163 DsbA-like thioredoxin domain-containing protein; DSBA oxidoreductase 2710565 7174094 DvMF_2172 Desulfovibrio vulgaris str. 'Miyazaki F' DSBA oxidoreductase YP_002436583.1 2709762 R 883 CDS YP_002436584.1 218887263 7174095 complement(2710934..2711260) 1 NC_011769.1 PFAM: branched-chain amino acid transport; KEGG: dde:Dde_0159 hypothetical protein; branched-chain amino acid transport 2711260 7174095 DvMF_2173 Desulfovibrio vulgaris str. 'Miyazaki F' branched-chain amino acid transport YP_002436584.1 2710934 R 883 CDS YP_002436585.1 218887264 7174096 complement(2711285..2712133) 1 NC_011769.1 PFAM: AzlC family protein; KEGG: dde:Dde_0158 AzlC family protein; AzlC family protein 2712133 7174096 DvMF_2174 Desulfovibrio vulgaris str. 'Miyazaki F' AzlC family protein YP_002436585.1 2711285 R 883 CDS YP_002436586.1 218887265 7174097 2712433..2713929 1 NC_011769.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dde:Dde_0157 GntR family transcriptional regulator; GntR family transcriptional regulator 2713929 7174097 DvMF_2175 Desulfovibrio vulgaris str. 'Miyazaki F' GntR family transcriptional regulator YP_002436586.1 2712433 D 883 CDS YP_002436587.1 218887266 7174098 complement(2714037..2714462) 1 NC_011769.1 KEGG: dde:Dde_0093 hypothetical protein; hypothetical protein 2714462 7174098 DvMF_2176 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436587.1 2714037 R 883 CDS YP_002436588.1 218887267 7174099 complement(2714835..2716832) 1 NC_011769.1 PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_0092 hydantoinase/oxoprolinase family protein; hydantoinase/oxoprolinase 2716832 7174099 DvMF_2177 Desulfovibrio vulgaris str. 'Miyazaki F' hydantoinase/oxoprolinase YP_002436588.1 2714835 R 883 CDS YP_002436589.1 218887268 7174100 complement(2717075..2717440) 1 NC_011769.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: asa:ASA_3792 chaperone CsaA; export-related chaperone CsaA 2717440 7174100 DvMF_2178 Desulfovibrio vulgaris str. 'Miyazaki F' export-related chaperone CsaA YP_002436589.1 2717075 R 883 CDS YP_002436590.1 218887269 7174101 complement(2717625..2718539) 1 NC_011769.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sfu:Sfum_1190 methyltransferase type 11; methyltransferase type 11 2718539 7174101 DvMF_2179 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase type 11 YP_002436590.1 2717625 R 883 CDS YP_002436591.1 218887270 7174102 complement(2718931..2720124) 1 NC_011769.1 PFAM: beta-lactamase; flavodoxin/nitric oxide synthase; KEGG: ppd:Ppro_3699 hypothetical protein; metallo-beta-lactamase/flavodoxin domain-containing protein 2720124 7174102 DvMF_2180 Desulfovibrio vulgaris str. 'Miyazaki F' metallo-beta-lactamase/flavodoxin domain-containing protein YP_002436591.1 2718931 R 883 CDS YP_002436592.1 218887271 7174103 complement(2720693..2721304) 1 NC_011769.1 PFAM: heat shock protein Hsp20; KEGG: rca:Rcas_4342 heat shock protein HSP20; heat shock protein Hsp20 2721304 7174103 DvMF_2181 Desulfovibrio vulgaris str. 'Miyazaki F' heat shock protein Hsp20 YP_002436592.1 2720693 R 883 CDS YP_002436593.1 218887272 7174104 complement(2721645..2723423) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2723423 7174104 DvMF_2182 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002436593.1 2721645 R 883 CDS YP_002436594.1 218887273 7174105 2723923..2726118 1 NC_011769.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 2726118 7174105 DvMF_2183 Desulfovibrio vulgaris str. 'Miyazaki F' malate synthase G YP_002436594.1 2723923 D 883 CDS YP_002436595.1 218887274 7174106 2726347..2727660 1 NC_011769.1 KEGG: mgr:MGG_14155 hypothetical protein; hypothetical protein 2727660 7174106 DvMF_2184 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436595.1 2726347 D 883 CDS YP_002436596.1 218887275 7174107 2727957..2728697 1 NC_011769.1 PFAM: ThiJ/PfpI domain protein; KEGG: bbr:BB3066 hypothetical protein; ThiJ/PfpI domain-containing protein 2728697 7174107 DvMF_2185 Desulfovibrio vulgaris str. 'Miyazaki F' ThiJ/PfpI domain-containing protein YP_002436596.1 2727957 D 883 CDS YP_002436597.1 218887276 7174108 complement(2728943..2730445) 1 NC_011769.1 PFAM: Dual specificity protein phosphatase; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase; dual specificity protein phosphatase 2730445 7174108 DvMF_2186 Desulfovibrio vulgaris str. 'Miyazaki F' dual specificity protein phosphatase YP_002436597.1 2728943 R 883 CDS YP_002436598.1 218887277 7174109 complement(2730442..2733027) 1 NC_011769.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_0604 pyruvate,water dikinase; pyruvate phosphate dikinase 2733027 7174109 DvMF_2187 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate phosphate dikinase YP_002436598.1 2730442 R 883 CDS YP_002436599.1 218887278 7174110 complement(2733146..2733505) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_0603 response regulator receiver domain-containing protein; response regulator receiver protein 2733505 7174110 DvMF_2188 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436599.1 2733146 R 883 CDS YP_002436600.1 218887279 7174111 complement(2733764..2735944) 1 NC_011769.1 KEGG: dde:Dde_0602 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 2735944 7174111 DvMF_2189 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002436600.1 2733764 R 883 CDS YP_002436601.1 218887280 7174112 complement(2735941..2736885) 1 NC_011769.1 TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: dde:Dde_0601 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 2736885 7174112 DvMF_2190 Desulfovibrio vulgaris str. 'Miyazaki F' phosphonate ABC transporter periplasmic phosphonate-binding protein YP_002436601.1 2735941 R 883 CDS YP_002436602.1 218887281 7174113 complement(2736913..2737626) 1 NC_011769.1 KEGG: dde:Dde_0600 hypothetical protein; hypothetical protein 2737626 7174113 DvMF_2191 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436602.1 2736913 R 883 CDS YP_002436603.1 218887282 7174114 complement(2737714..2738856) 1 NC_011769.1 PFAM: protein of unknown function DUF81; KEGG: dde:Dde_0598 hypothetical protein; hypothetical protein 2738856 7174114 DvMF_2192 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436603.1 2737714 R 883 CDS YP_002436604.1 218887283 7174115 complement(2738954..2739730) 1 NC_011769.1 PFAM: protein of unknown function DUF169; KEGG: dde:Dde_0597 hypothetical protein; hypothetical protein 2739730 7174115 DvMF_2193 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436604.1 2738954 R 883 CDS YP_002436605.1 218887284 7174116 2740607..2741704 1 NC_011769.1 PFAM: permease; KEGG: hau:Haur_1694 permease; permease 2741704 7174116 DvMF_2194 Desulfovibrio vulgaris str. 'Miyazaki F' permease YP_002436605.1 2740607 D 883 CDS YP_002436606.1 218887285 7174117 2741701..2742951 1 NC_011769.1 KEGG: mmc:Mmcs_2996 hypothetical protein; hypothetical protein 2742951 7174117 DvMF_2195 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436606.1 2741701 D 883 CDS YP_002436607.1 218887286 7174118 complement(2743136..2745964) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase; KEGG: dde:Dde_3604 oxidoreductase; FAD linked oxidase 2745964 7174118 DvMF_2196 Desulfovibrio vulgaris str. 'Miyazaki F' FAD linked oxidase YP_002436607.1 2743136 R 883 CDS YP_002436608.1 218887287 7174119 complement(2746418..2747458) 1 NC_011769.1 PFAM: protein of unknown function DUF805; KEGG: chu:CHU_1014 cytochrome; hypothetical protein 2747458 7174119 DvMF_2197 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436608.1 2746418 R 883 CDS YP_002436609.1 218887288 7174120 complement(2747636..2751232) 1 NC_011769.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: dde:Dde_3603 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 2751232 7174120 DvMF_2198 Desulfovibrio vulgaris str. 'Miyazaki F' DEAD/DEAH box helicase YP_002436609.1 2747636 R 883 CDS YP_002436610.1 218887289 7174121 complement(2751516..2752109) 1 NC_011769.1 KEGG: cel:E03H12.5 E03H12.5; hypothetical protein 2752109 7174121 DvMF_2199 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436610.1 2751516 R 883 CDS YP_002436611.1 218887290 7174122 complement(2752398..2753777) 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: lip:LI0877 response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; Fis family transcriptional regulator 2753777 7174122 DvMF_2200 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436611.1 2752398 R 883 CDS YP_002436612.1 218887291 7174123 complement(2754115..2755557) 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3598 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2755557 7174123 DvMF_2201 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002436612.1 2754115 R 883 CDS YP_002436613.1 218887292 7174124 complement(2755561..2756922) 1 NC_011769.1 PFAM: phosphoglucose isomerase (PGI); KEGG: dde:Dde_3597 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 2756922 7174124 DvMF_2202 Desulfovibrio vulgaris str. 'Miyazaki F' glucose-6-phosphate isomerase YP_002436613.1 2755561 R 883 CDS YP_002436614.1 218887293 7174125 complement(2756925..2757218) 1 NC_011769.1 hypothetical protein 2757218 7174125 DvMF_2203 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436614.1 2756925 R 883 CDS YP_002436615.1 218887294 7174126 complement(2757407..2758579) 1 NC_011769.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: dde:Dde_3596 L-aspartate aminotransferase; class I and II aminotransferase 2758579 7174126 DvMF_2204 Desulfovibrio vulgaris str. 'Miyazaki F' class I and II aminotransferase YP_002436615.1 2757407 R 883 CDS YP_002436616.1 218887295 7174127 2758864..2759802 1 NC_011769.1 PFAM: sugar fermentation stimulation protein; KEGG: dde:Dde_3594 sugar fermentation stimulation protein; sugar fermentation stimulation protein 2759802 7174127 DvMF_2205 Desulfovibrio vulgaris str. 'Miyazaki F' sugar fermentation stimulation protein YP_002436616.1 2758864 D 883 CDS YP_002436617.1 218887296 7174128 complement(2759859..2760134) 1 NC_011769.1 KEGG: dde:Dde_3593 hypothetical protein; hypothetical protein 2760134 7174128 DvMF_2206 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436617.1 2759859 R 883 CDS YP_002436618.1 218887297 7174129 2761110..2762033 1 NC_011769.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2762033 era 7174129 era Desulfovibrio vulgaris str. 'Miyazaki F' GTP-binding protein Era YP_002436618.1 2761110 D 883 CDS YP_002436619.1 218887298 7174130 2762163..2762981 1 NC_011769.1 PFAM: alanine racemase domain protein; KEGG: dde:Dde_3590 hypothetical protein; alanine racemase 2762981 7174130 DvMF_2208 Desulfovibrio vulgaris str. 'Miyazaki F' alanine racemase YP_002436619.1 2762163 D 883 CDS YP_002436620.1 218887299 7174131 2763274..2764032 1 NC_011769.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel 2764032 7174131 DvMF_2209 Desulfovibrio vulgaris str. 'Miyazaki F' MotA/TolQ/ExbB proton channel YP_002436620.1 2763274 D 883 CDS YP_002436621.1 218887300 7174132 2764057..2764980 1 NC_011769.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3588 OmpA family protein; OmpA/MotB domain-containing protein 2764980 7174132 DvMF_2210 Desulfovibrio vulgaris str. 'Miyazaki F' OmpA/MotB domain-containing protein YP_002436621.1 2764057 D 883 CDS YP_002436622.1 218887301 7174133 2764982..2765917 1 NC_011769.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3587 chemotaxis protein MotB; OmpA/MotB domain-containing protein 2765917 7174133 DvMF_2211 Desulfovibrio vulgaris str. 'Miyazaki F' OmpA/MotB domain-containing protein YP_002436622.1 2764982 D 883 CDS YP_002436623.1 218887302 7174134 2765999..2766514 1 NC_011769.1 PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_3586 flagellar protein FliL; flagellar basal body-associated protein FliL 2766514 7174134 DvMF_2212 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar basal body-associated protein FliL YP_002436623.1 2765999 D 883 CDS YP_002436624.1 218887303 7174135 2766541..2767083 1 NC_011769.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dde:Dde_3585 surface presentation of antigens (SpoA) protein; flagellar motor switch protein FliN 2767083 7174135 DvMF_2213 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar motor switch protein FliN YP_002436624.1 2766541 D 883 CDS YP_002436625.1 218887304 7174136 2767187..2767762 1 NC_011769.1 PFAM: flagellar biosynthesis protein FliO; KEGG: dde:Dde_3584 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein FliO 2767762 7174136 DvMF_2214 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar biosynthesis protein FliO YP_002436625.1 2767187 D 883 CDS YP_002436626.1 218887305 7174137 2767902..2768783 1 NC_011769.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2768783 fliP 7174137 fliP Desulfovibrio vulgaris str. 'Miyazaki F' flagellar biosynthesis protein FliP YP_002436626.1 2767902 D 883 CDS YP_002436627.1 218887306 7174138 2768797..2769066 1 NC_011769.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: dde:Dde_3582 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 2769066 7174138 DvMF_2216 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar biosynthetic protein FliQ YP_002436627.1 2768797 D 883 CDS YP_002436628.1 218887307 7174139 complement(2769246..2770280) 1 NC_011769.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dde:Dde_3581 RNA methyltransferase TrmH, group 3; tRNA/rRNA methyltransferase SpoU 2770280 7174139 DvMF_2217 Desulfovibrio vulgaris str. 'Miyazaki F' tRNA/rRNA methyltransferase SpoU YP_002436628.1 2769246 R 883 CDS YP_002436629.1 218887308 7174140 2770936..2772792 1 NC_011769.1 PFAM: peptidoglycan-binding LysM; lytic transglycosylase catalytic; KEGG: dde:Dde_3580 peptidoglycan-binding LysM; lytic transglycosylase 2772792 7174140 DvMF_2218 Desulfovibrio vulgaris str. 'Miyazaki F' lytic transglycosylase YP_002436629.1 2770936 D 883 CDS YP_002436630.1 218887309 7174146 complement(2779206..2779823) 1 NC_011769.1 PFAM: nuclease (SNase domain protein); KEGG: dol:Dole_2932 nuclease; nuclease 2779823 7174146 DvMF_2219 Desulfovibrio vulgaris str. 'Miyazaki F' nuclease YP_002436630.1 2779206 R 883 CDS YP_002436631.1 218887310 7174147 complement(2779909..2780553) 1 NC_011769.1 PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_0413 acyl-CoA thioesterase precursor; G-D-S-L family lipolytic protein 2780553 7174147 DvMF_2220 Desulfovibrio vulgaris str. 'Miyazaki F' G-D-S-L family lipolytic protein YP_002436631.1 2779909 R 883 CDS YP_002436632.1 218887311 7174148 2780732..2781490 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0412 ATPase; ABC transporter 2781490 7174148 DvMF_2221 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436632.1 2780732 D 883 CDS YP_002436633.1 218887312 7174149 2781487..2784294 1 NC_011769.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0411 hypothetical protein; hypothetical protein 2784294 7174149 DvMF_2222 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436633.1 2781487 D 883 CDS YP_002436634.1 218887313 7174150 complement(2784558..2784920) 1 NC_011769.1 PFAM: diacylglycerol kinase; KEGG: har:HEAR0819 diacylglycerol kinase; diacylglycerol kinase 2784920 7174150 DvMF_2223 Desulfovibrio vulgaris str. 'Miyazaki F' diacylglycerol kinase YP_002436634.1 2784558 R 883 CDS YP_002436635.1 218887314 7174152 complement(2785206..2786483) 1 NC_011769.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2786483 7174152 DvMF_2224 Desulfovibrio vulgaris str. 'Miyazaki F' seryl-tRNA synthetase YP_002436635.1 2785206 R 883 CDS YP_002436636.1 218887315 7174153 complement(2786930..2787349) 1 NC_011769.1 KEGG: dde:Dde_0197 hypothetical protein; hypothetical protein 2787349 7174153 DvMF_2225 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436636.1 2786930 R 883 CDS YP_002436637.1 218887316 7174154 complement(2788005..2788403) 1 NC_011769.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_0203 hypothetical protein; type IV pilus assembly PilZ 2788403 7174154 DvMF_2226 Desulfovibrio vulgaris str. 'Miyazaki F' type IV pilus assembly PilZ YP_002436637.1 2788005 R 883 CDS YP_002436638.1 218887317 7174155 2788852..2789220 1 NC_011769.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_0204 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 2789220 7174155 DvMF_2227 Desulfovibrio vulgaris str. 'Miyazaki F' dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_002436638.1 2788852 D 883 CDS YP_002436639.1 218887318 7174156 2789282..2789779 1 NC_011769.1 PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 SecC motif-containing protein; SEC-C motif domain protein 2789779 7174156 DvMF_2228 Desulfovibrio vulgaris str. 'Miyazaki F' SEC-C motif domain protein YP_002436639.1 2789282 D 883 CDS YP_002436640.1 218887319 7174157 2790103..2791221 1 NC_011769.1 KEGG: dde:Dde_0075 hypothetical protein; hypothetical protein 2791221 7174157 DvMF_2229 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436640.1 2790103 D 883 CDS YP_002436641.1 218887320 7174158 2791493..2792314 1 NC_011769.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dde:Dde_0074 TatD-related deoxyribonuclease; TatD family hydrolase 2792314 7174158 DvMF_2230 Desulfovibrio vulgaris str. 'Miyazaki F' TatD family hydrolase YP_002436641.1 2791493 D 883 CDS YP_002436642.1 218887321 7174159 2792470..2792892 1 NC_011769.1 PFAM: protein of unknown function DUF309; KEGG: gsu:GSU1664 hypothetical protein; hypothetical protein 2792892 7174159 DvMF_2231 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436642.1 2792470 D 883 CDS YP_002436643.1 218887322 7174160 complement(2792995..2793846) 1 NC_011769.1 KEGG: dde:Dde_3029 carbon monoxide dehydrogenase accessory protein CooC; carbon monoxide dehydrogenase accessory protein CooC 2793846 7174160 DvMF_2232 Desulfovibrio vulgaris str. 'Miyazaki F' carbon monoxide dehydrogenase accessory protein CooC YP_002436643.1 2792995 R 883 CDS YP_002436644.1 218887323 7174161 complement(2794183..2796072) 1 NC_011769.1 KEGG: dde:Dde_3028 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; carbon-monoxide dehydrogenase, catalytic subunit 2796072 7174161 DvMF_2233 Desulfovibrio vulgaris str. 'Miyazaki F' carbon-monoxide dehydrogenase, catalytic subunit YP_002436644.1 2794183 R 883 CDS YP_002436645.1 218887324 7174162 complement(2796421..2797263) 1 NC_011769.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dde:Dde_3027 Crp/FNR family transcriptional regulator; Crp/Fnr family transcriptional regulator 2797263 7174162 DvMF_2234 Desulfovibrio vulgaris str. 'Miyazaki F' Crp/Fnr family transcriptional regulator YP_002436645.1 2796421 R 883 CDS YP_002436646.1 218887325 7174163 complement(2797491..2798543) 1 NC_011769.1 KEGG: dde:Dde_0076 translation initiation factor 2B subunit I; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family 2798543 7174163 DvMF_2235 Desulfovibrio vulgaris str. 'Miyazaki F' translation initiation factor, aIF-2BI family YP_002436646.1 2797491 R 883 CDS YP_002436647.1 218887326 7174164 complement(2798940..2799539) 1 NC_011769.1 PFAM: isochorismatase hydrolase; KEGG: sfu:Sfum_3430 isochorismatase hydrolase; isochorismatase hydrolase 2799539 7174164 DvMF_2236 Desulfovibrio vulgaris str. 'Miyazaki F' isochorismatase hydrolase YP_002436647.1 2798940 R 883 CDS YP_002436648.1 218887327 7174165 2800110..2801432 1 NC_011769.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2801432 7174165 DvMF_2237 Desulfovibrio vulgaris str. 'Miyazaki F' tryptophan synthase subunit beta YP_002436648.1 2800110 D 883 CDS YP_002436649.1 218887328 7174166 complement(2801642..2802142) 1 NC_011769.1 PFAM: Tir chaperone family protein; KEGG: eta:ETA_05380 potential ORFB-specific chaperone, encodes a homolog of virulence/avirulence effector proteins secreted via the type III pathway; Tir chaperone family protein 2802142 7174166 DvMF_2238 Desulfovibrio vulgaris str. 'Miyazaki F' Tir chaperone family protein YP_002436649.1 2801642 R 883 CDS YP_002436650.1 218887329 7174167 complement(2802171..2805872) 1 NC_011769.1 hypothetical protein 2805872 7174167 DvMF_2239 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436650.1 2802171 R 883 CDS YP_002436651.1 218887330 7174173 complement(2812227..2813327) 1 NC_011769.1 KEGG: hch:HCH_03629 hypothetical protein; hypothetical protein 2813327 7174173 DvMF_2240 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436651.1 2812227 R 883 CDS YP_002436652.1 218887331 7174174 2813881..2815104 1 NC_011769.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transporter; xanthine/uracil/vitamin C permease; KEGG: bcm:Bcenmc03_2357 benzoate transporter; benzoate transporter 2815104 7174174 DvMF_2241 Desulfovibrio vulgaris str. 'Miyazaki F' benzoate transporter YP_002436652.1 2813881 D 883 CDS YP_002436653.1 218887332 7174175 complement(2815394..2816470) 1 NC_011769.1 PFAM: metal-dependent hydrolase HDOD; KEGG: gsu:GSU2576 HD domain-containing protein; signal transduction protein 2816470 7174175 DvMF_2242 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction protein YP_002436653.1 2815394 R 883 CDS YP_002436654.1 218887333 7174176 complement(2816990..2818678) 1 NC_011769.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0193 AMP-binding enzyme family protein; AMP-dependent synthetase and ligase 2818678 7174176 DvMF_2243 Desulfovibrio vulgaris str. 'Miyazaki F' AMP-dependent synthetase and ligase YP_002436654.1 2816990 R 883 CDS YP_002436655.1 218887334 7174177 2819104..2819409 1 NC_011769.1 PFAM: stress responsive alpha-beta barrel domain protein; KEGG: dde:Dde_0194 hypothetical protein; stress responsive alpha-beta barrel domain-containing protein 2819409 7174177 DvMF_2244 Desulfovibrio vulgaris str. 'Miyazaki F' stress responsive alpha-beta barrel domain-containing protein YP_002436655.1 2819104 D 883 CDS YP_002436656.1 218887335 7174178 complement(2819501..2820139) 1 NC_011769.1 PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: deh:cbdb_A1379 SAM-dependent methyltransferase; methyltransferase type 11 2820139 7174178 DvMF_2245 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase type 11 YP_002436656.1 2819501 R 883 CDS YP_002436657.1 218887336 7174179 2820336..2821301 1 NC_011769.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gur:Gura_1198 LysR family transcriptional regulator; LysR family transcriptional regulator 2821301 7174179 DvMF_2246 Desulfovibrio vulgaris str. 'Miyazaki F' LysR family transcriptional regulator YP_002436657.1 2820336 D 883 CDS YP_002436658.1 218887337 7174180 complement(2821288..2821935) 1 NC_011769.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: dde:Dde_1696 hemolysin III family channel protein; hemolysin III family channel protein 2821935 7174180 DvMF_2247 Desulfovibrio vulgaris str. 'Miyazaki F' hemolysin III family channel protein YP_002436658.1 2821288 R 883 CDS YP_002436659.1 218887338 7174181 complement(2822247..2823641) 1 NC_011769.1 KEGG: dde:Dde_0560 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle-docking protein FtsY 2823641 7174181 DvMF_2248 Desulfovibrio vulgaris str. 'Miyazaki F' signal recognition particle-docking protein FtsY YP_002436659.1 2822247 R 883 CDS YP_002436660.1 218887339 7174182 2824044..2826359 1 NC_011769.1 KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 2826359 7174182 DvMF_2249 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction histidine kinase, nitrogen specific, NtrB YP_002436660.1 2824044 D 883 CDS YP_002436661.1 218887340 7174183 2826744..2827967 1 NC_011769.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dde:Dde_0339 OMPP1/FadL/TodX family outer membrane protein; aromatic hydrocarbon degradation membrane protein 2827967 7174183 DvMF_2250 Desulfovibrio vulgaris str. 'Miyazaki F' aromatic hydrocarbon degradation membrane protein YP_002436661.1 2826744 D 883 CDS YP_002436662.1 218887341 7174184 complement(2828282..2828776) 1 NC_011769.1 KEGG: dde:Dde_0340 hypothetical protein; hypothetical protein 2828776 7174184 DvMF_2251 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436662.1 2828282 R 883 CDS YP_002436663.1 218887342 7174185 complement(2828773..2831745) 1 NC_011769.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dde:Dde_0341 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 2831745 7174185 DvMF_2252 Desulfovibrio vulgaris str. 'Miyazaki F' DEAD/DEAH box helicase YP_002436663.1 2828773 R 883 CDS YP_002436664.1 218887343 7174186 complement(2832064..2832801) 1 NC_011769.1 PFAM: precorrin-8X methylmutase CbiC/CobH; KEGG: dde:Dde_0342 precorrin-8X methylmutase; precorrin-8X methylmutase CbiC/CobH 2832801 7174186 DvMF_2253 Desulfovibrio vulgaris str. 'Miyazaki F' precorrin-8X methylmutase CbiC/CobH YP_002436664.1 2832064 R 883 CDS YP_002436665.1 218887344 7174187 complement(2832792..2834408) 1 NC_011769.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dde:Dde_0343 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing); cobyrinic acid a,c-diamide synthase 2834408 7174187 DvMF_2254 Desulfovibrio vulgaris str. 'Miyazaki F' cobyrinic acid a,c-diamide synthase YP_002436665.1 2832792 R 883 CDS YP_002436666.1 218887345 7174188 complement(2834480..2834737) 1 NC_011769.1 KEGG: dde:Dde_0344 hypothetical protein; hypothetical protein 2834737 7174188 DvMF_2255 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436666.1 2834480 R 883 CDS YP_002436667.1 218887346 7174189 2835164..2835556 1 NC_011769.1 KEGG: dde:Dde_0346 MucR family transcriptional regulator; MucR family transcriptional regulator 2835556 7174189 DvMF_2256 Desulfovibrio vulgaris str. 'Miyazaki F' MucR family transcriptional regulator YP_002436667.1 2835164 D 883 CDS YP_002436668.1 218887347 7174190 2835882..2837693 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_0347 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2837693 7174190 DvMF_2257 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002436668.1 2835882 D 883 CDS YP_002436669.1 218887348 7174191 2837899..2838387 1 NC_011769.1 KEGG: dde:Dde_0206 hypothetical protein; hypothetical protein 2838387 7174191 DvMF_2258 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436669.1 2837899 D 883 CDS YP_002436670.1 218887349 7174192 complement(2838525..2839349) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: glo:Glov_1037 ABC transporter; ABC transporter 2839349 7174192 DvMF_2259 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436670.1 2838525 R 883 CDS YP_002436671.1 218887350 7174193 complement(2839346..2840125) 1 NC_011769.1 PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1756 hypothetical protein; cobalamin synthesis protein P47K 2840125 7174193 DvMF_2260 Desulfovibrio vulgaris str. 'Miyazaki F' cobalamin synthesis protein P47K YP_002436671.1 2839346 R 883 CDS YP_002436672.1 218887351 7174194 complement(2840113..2841198) 1 NC_011769.1 KEGG: rpa:RPA1389 hypothetical protein; hypothetical protein 2841198 7174194 DvMF_2261 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436672.1 2840113 R 883 CDS YP_002436673.1 218887352 7174195 complement(2841338..2842216) 1 NC_011769.1 KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; hypothetical protein 2842216 7174195 DvMF_2262 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436673.1 2841338 R 883 CDS YP_002436674.1 218887353 7174196 complement(2842497..2844017) 1 NC_011769.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2844017 engA 7174196 engA Desulfovibrio vulgaris str. 'Miyazaki F' GTP-binding protein EngA YP_002436674.1 2842497 R 883 CDS YP_002436675.1 218887354 7174197 2844568..2845554 1 NC_011769.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_0119 excisionase/Xis, DNA-binding; excisionase family DNA binding domain-containing protein 2845554 7174197 DvMF_2264 Desulfovibrio vulgaris str. 'Miyazaki F' excisionase family DNA binding domain-containing protein YP_002436675.1 2844568 D 883 CDS YP_002436676.1 218887355 7174198 complement(2845697..2846587) 1 NC_011769.1 PFAM: regulatory protein MarR; KEGG: ckl:CKL_0340 transcriptional regulator; MarR family transcriptional regulator 2846587 7174198 DvMF_2265 Desulfovibrio vulgaris str. 'Miyazaki F' MarR family transcriptional regulator YP_002436676.1 2845697 R 883 CDS YP_002436677.1 218887356 7174199 complement(2846772..2848310) 1 NC_011769.1 KEGG: dde:Dde_0063 lipoprotein; lipoprotein 2848310 7174199 DvMF_2266 Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein YP_002436677.1 2846772 R 883 CDS YP_002436678.1 218887357 7174200 complement(2848310..2849344) 1 NC_011769.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 2849344 7174200 DvMF_2267 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_002436678.1 2848310 R 883 CDS YP_002436679.1 218887358 7174201 2850088..2851011 1 NC_011769.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2851011 7174201 DvMF_2268 Desulfovibrio vulgaris str. 'Miyazaki F' branched-chain amino acid aminotransferase YP_002436679.1 2850088 D 883 CDS YP_002436680.1 218887359 7174202 2851219..2853285 1 NC_011769.1 KEGG: dde:Dde_0066 DNA polymerase III tau subunit; TIGRFAM: DNA polymerase III subunits gamma/tau; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA; DNA polymerase III subunits gamma/tau 2853285 7174202 DvMF_2269 Desulfovibrio vulgaris str. 'Miyazaki F' DNA polymerase III subunits gamma/tau YP_002436680.1 2851219 D 883 CDS YP_002436681.1 218887360 7174203 2853304..2853615 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: dde:Dde_0067 hypothetical protein; hypothetical protein 2853615 7174203 DvMF_2270 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436681.1 2853304 D 883 CDS YP_002436682.1 218887361 7174204 2853744..2854349 1 NC_011769.1 TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; KEGG: dde:Dde_0068 DNA replication and repair protein RecR; recombination protein RecR 2854349 7174204 DvMF_2271 Desulfovibrio vulgaris str. 'Miyazaki F' recombination protein RecR YP_002436682.1 2853744 D 883 CDS YP_002436683.1 218887362 7174205 complement(2854675..2855430) 1 NC_011769.1 KEGG: dde:Dde_0372 hypothetical protein; hypothetical protein 2855430 7174205 DvMF_2272 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436683.1 2854675 R 883 CDS YP_002436684.1 218887363 7174206 2856128..2859799 1 NC_011769.1 KEGG: dde:Dde_0370 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 2859799 7174206 DvMF_2273 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor hybrid histidine kinase YP_002436684.1 2856128 D 883 CDS YP_002436685.1 218887364 7174207 complement(2859889..2861364) 1 NC_011769.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dde:Dde_0367 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase 2861364 7174207 DvMF_2274 Desulfovibrio vulgaris str. 'Miyazaki F' 3-deoxy-D-manno-octulosonic-acid transferase YP_002436685.1 2859889 R 883 CDS YP_002436686.1 218887365 7174208 complement(2861444..2862181) 1 NC_011769.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_0365 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2862181 7174208 DvMF_2275 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002436686.1 2861444 R 883 CDS YP_002436687.1 218887366 7174209 2862570..2863667 1 NC_011769.1 PFAM: hydrogenase formation HypD protein; KEGG: dde:Dde_0364 hydrogenase expression/formation protein HypD; hydrogenase formation HypD protein 2863667 7174209 DvMF_2276 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase formation HypD protein YP_002436687.1 2862570 D 883 CDS YP_002436688.1 218887367 7174210 2863672..2864697 1 NC_011769.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dde:Dde_0363 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2864697 7174210 DvMF_2277 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase expression/formation protein HypE YP_002436688.1 2863672 D 883 CDS YP_002436689.1 218887368 7174212 complement(2866612..2867733) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0362 sugar transferase involved in lipopolysaccharide synthesis-like; group 1 glycosyl transferase 2867733 7174212 DvMF_2279 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002436689.1 2866612 R 883 CDS YP_002436690.1 218887369 7174213 2868302..2869330 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: dde:Dde_0358 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 2869330 7174213 DvMF_2280 Desulfovibrio vulgaris str. 'Miyazaki F' NAD-dependent epimerase/dehydratase YP_002436690.1 2868302 D 883 CDS YP_002436691.1 218887370 7174214 2869587..2869955 1 NC_011769.1 PFAM: regulatory protein ArsR; KEGG: dde:Dde_3721 ArsR family transcriptional regulator; ArsR family transcriptional regulator 2869955 7174214 DvMF_2281 Desulfovibrio vulgaris str. 'Miyazaki F' ArsR family transcriptional regulator YP_002436691.1 2869587 D 883 CDS YP_002436692.1 218887371 7174215 2870591..2871583 1 NC_011769.1 PFAM: permease; KEGG: dde:Dde_3722 permease-like; permease 2871583 7174215 DvMF_2282 Desulfovibrio vulgaris str. 'Miyazaki F' permease YP_002436692.1 2870591 D 883 CDS YP_002436693.1 218887372 7174216 complement(2871815..2872375) 1 NC_011769.1 PFAM: hypothetical protein; KEGG: dde:Dde_0357 hypothetical protein; hypothetical protein 2872375 7174216 DvMF_2283 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436693.1 2871815 R 883 CDS YP_002436694.1 218887373 7174217 2873035..2873445 1 NC_011769.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 2873445 flgB 7174217 flgB Desulfovibrio vulgaris str. 'Miyazaki F' flagellar basal body rod protein FlgB YP_002436694.1 2873035 D 883 CDS YP_002436695.1 218887374 7174218 2873445..2873882 1 NC_011769.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0355 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 2873882 7174218 DvMF_2285 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar basal-body rod protein FlgC YP_002436695.1 2873445 D 883 CDS YP_002436696.1 218887375 7174219 2873902..2874234 1 NC_011769.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: lip:LI0858 flagellar hook-basal body protein; flagellar hook-basal body complex subunit FliE 2874234 7174219 DvMF_2286 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar hook-basal body complex subunit FliE YP_002436696.1 2873902 D 883 CDS YP_002436697.1 218887376 7174220 2874551..2876170 1 NC_011769.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; flagellar M-ring domain protein; KEGG: dde:Dde_0353 flagellar M-ring protein FliF; flagellar M-ring protein FliF 2876170 7174220 DvMF_2287 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar M-ring protein FliF YP_002436697.1 2874551 D 883 CDS YP_002436698.1 218887377 7174221 2876139..2877155 1 NC_011769.1 PFAM: flagellar motor switch protein FliG; KEGG: dde:Dde_0352 flagellar motor switch protein FliG; flagellar motor switch protein FliG 2877155 7174221 DvMF_2288 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar motor switch protein FliG YP_002436698.1 2876139 D 883 CDS YP_002436699.1 218887378 7174222 2877142..2877906 1 NC_011769.1 KEGG: dde:Dde_0351 flagellar assembly protein FliH; flagellar assembly protein FliH 2877906 7174222 DvMF_2289 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar assembly protein FliH YP_002436699.1 2877142 D 883 CDS YP_002436700.1 218887379 7174223 2877968..2879374 1 NC_011769.1 KEGG: dde:Dde_0350 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; SMART: ATPase AAA; flagellar protein export ATPase FliI 2879374 7174223 DvMF_2290 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar protein export ATPase FliI YP_002436700.1 2877968 D 883 CDS YP_002436701.1 218887380 7174224 complement(2879624..2880376) 1 NC_011769.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related; PA-phosphatase like phosphoesterase 2880376 7174224 DvMF_2291 Desulfovibrio vulgaris str. 'Miyazaki F' PA-phosphatase like phosphoesterase YP_002436701.1 2879624 R 883 CDS YP_002436702.1 218887381 7174225 complement(2880398..2881300) 1 NC_011769.1 PFAM: peptidase M23; KEGG: dde:Dde_0243 M24/M37 family peptidase; peptidase M23 2881300 7174225 DvMF_2292 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M23 YP_002436702.1 2880398 R 883 CDS YP_002436703.1 218887382 7174226 complement(2881458..2882204) 1 NC_011769.1 PFAM: PP-loop domain protein; KEGG: dde:Dde_0244 hypothetical protein; PP-loop domain-containing protein 2882204 7174226 DvMF_2293 Desulfovibrio vulgaris str. 'Miyazaki F' PP-loop domain-containing protein YP_002436703.1 2881458 R 883 CDS YP_002436704.1 218887383 7174227 2882854..2883081 1 NC_011769.1 TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; KEGG: dde:Dde_0247 DNA-directed RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega 2883081 7174227 DvMF_2294 Desulfovibrio vulgaris str. 'Miyazaki F' DNA-directed RNA polymerase subunit omega YP_002436704.1 2882854 D 883 CDS YP_002436705.1 218887384 7174228 2883088..2884212 1 NC_011769.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 2884212 7174228 DvMF_2295 Desulfovibrio vulgaris str. 'Miyazaki F' chaperone protein DnaJ YP_002436705.1 2883088 D 883 CDS YP_002436706.1 218887385 7174229 2884469..2885122 1 NC_011769.1 KEGG: maq:Maqu_2657 filamentation induced by cAMP protein Fic; hypothetical protein 2885122 7174229 DvMF_2296 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436706.1 2884469 D 883 CDS YP_002436707.1 218887386 7174230 2885162..2885677 1 NC_011769.1 KEGG: mhu:Mhun_0543 hypothetical protein; hypothetical protein 2885677 7174230 DvMF_2297 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436707.1 2885162 D 883 CDS YP_002436708.1 218887387 7174231 2886064..2887641 1 NC_011769.1 PFAM: outer membrane efflux protein; KEGG: ppd:Ppro_1440 outer membrane efflux protein; outer membrane efflux protein 2887641 7174231 DvMF_2298 Desulfovibrio vulgaris str. 'Miyazaki F' outer membrane efflux protein YP_002436708.1 2886064 D 883 CDS YP_002436709.1 218887388 7174233 2888613..2891423 1 NC_011769.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; hypothetical protein; KEGG: mgm:Mmc1_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2891423 7174233 DvMF_2300 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_002436709.1 2888613 D 883 CDS YP_002436710.1 218887389 7174234 2891919..2892410 1 NC_011769.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dde:Dde_0249 GTP cyclohydrolase subunit MoaC; molybdenum cofactor biosynthesis protein C 2892410 7174234 DvMF_2301 Desulfovibrio vulgaris str. 'Miyazaki F' molybdenum cofactor biosynthesis protein C YP_002436710.1 2891919 D 883 CDS YP_002436711.1 218887390 7174235 complement(2892509..2893186) 1 NC_011769.1 PFAM: dimethylmenaquinone methyltransferase; KEGG: rsq:Rsph17025_3165 hypothetical protein; dimethylmenaquinone methyltransferase 2893186 7174235 DvMF_2302 Desulfovibrio vulgaris str. 'Miyazaki F' dimethylmenaquinone methyltransferase YP_002436711.1 2892509 R 883 CDS YP_002436712.1 218887391 7174236 complement(2893323..2894333) 1 NC_011769.1 KEGG: cak:Caul_3283 esterase/lipase-like protein; esterase/lipase-like protein 2894333 7174236 DvMF_2303 Desulfovibrio vulgaris str. 'Miyazaki F' esterase/lipase-like protein YP_002436712.1 2893323 R 883 CDS YP_002436713.1 218887392 7174237 complement(2894495..2895274) 1 NC_011769.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2895274 7174237 DvMF_2304 Desulfovibrio vulgaris str. 'Miyazaki F' imidazole glycerol phosphate synthase subunit HisF YP_002436713.1 2894495 R 883 CDS YP_002436714.1 218887393 7174238 complement(2895267..2895905) 1 NC_011769.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2895905 hisH 7174238 hisH Desulfovibrio vulgaris str. 'Miyazaki F' imidazole glycerol phosphate synthase subunit HisH YP_002436714.1 2895267 R 883 CDS YP_002436715.1 218887394 7174239 2896618..2899854 1 NC_011769.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain oligomerisation; carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: dde:Dde_0333 carbamoyl-phosphate synthase large subunit; carbamoyl-phosphate synthase large subunit 2899854 7174239 DvMF_2306 Desulfovibrio vulgaris str. 'Miyazaki F' carbamoyl-phosphate synthase large subunit YP_002436715.1 2896618 D 883 CDS YP_002436716.1 218887395 7174240 2900037..2901440 1 NC_011769.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: dde:Dde_0334 amidophosphoribosyltransferase; amidophosphoribosyltransferase 2901440 7174240 DvMF_2307 Desulfovibrio vulgaris str. 'Miyazaki F' amidophosphoribosyltransferase YP_002436716.1 2900037 D 883 CDS YP_002436717.1 218887396 7174241 2901848..2902849 1 NC_011769.1 KEGG: dde:Dde_0335 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 2902849 7174241 DvMF_2308 Desulfovibrio vulgaris str. 'Miyazaki F' KpsF/GutQ family protein YP_002436717.1 2901848 D 883 CDS YP_002436718.1 218887397 7174242 2902925..2903452 1 NC_011769.1 PFAM: thioesterase superfamily protein; KEGG: dde:Dde_0336 thioesterase family protein; thioesterase superfamily protein 2903452 7174242 DvMF_2309 Desulfovibrio vulgaris str. 'Miyazaki F' thioesterase superfamily protein YP_002436718.1 2902925 D 883 CDS YP_002436719.1 218887398 7174243 complement(2903639..2904985) 1 NC_011769.1 KEGG: dde:Dde_3625 hypothetical protein; hypothetical protein 2904985 7174243 DvMF_2310 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436719.1 2903639 R 883 CDS YP_002436720.1 218887399 7174244 complement(2905350..2909594) 1 NC_011769.1 KEGG: dde:Dde_3624 hypothetical protein; hypothetical protein 2909594 7174244 DvMF_2311 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436720.1 2905350 R 883 CDS YP_002436721.1 218887400 7174245 complement(2909594..2911135) 1 NC_011769.1 PFAM: metallophosphoesterase; KEGG: dde:Dde_3623 Ser/Thr protein phosphatase family protein; metallophosphoesterase 2911135 7174245 DvMF_2312 Desulfovibrio vulgaris str. 'Miyazaki F' metallophosphoesterase YP_002436721.1 2909594 R 883 CDS YP_002436722.1 218887401 7174246 2911502..2912947 1 NC_011769.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_3621 DNA-directed DNA polymerase; DNA-directed DNA polymerase 2912947 7174246 DvMF_2313 Desulfovibrio vulgaris str. 'Miyazaki F' DNA-directed DNA polymerase YP_002436722.1 2911502 D 883 CDS YP_002436723.1 218887402 7174247 complement(2912998..2913771) 1 NC_011769.1 PFAM: aminotransferase class IV; KEGG: dde:Dde_3619 hypothetical protein; class IV aminotransferase 2913771 7174247 DvMF_2314 Desulfovibrio vulgaris str. 'Miyazaki F' class IV aminotransferase YP_002436723.1 2912998 R 883 CDS YP_002436724.1 218887403 7174248 complement(2913768..2915411) 1 NC_011769.1 PFAM: chorismate binding-like; KEGG: dde:Dde_3618 aminodeoxychorismate synthase, subunit I; chorismate binding-like protein 2915411 7174248 DvMF_2315 Desulfovibrio vulgaris str. 'Miyazaki F' chorismate binding-like protein YP_002436724.1 2913768 R 883 CDS YP_002436725.1 218887404 7174249 complement(2915383..2916225) 1 NC_011769.1 PFAM: glutamine amidotransferase class-I; KEGG: dde:Dde_3617 aminodeoxychorismate synthase, glutamine amidotransferase subunit; glutamine amidotransferase 2916225 7174249 DvMF_2316 Desulfovibrio vulgaris str. 'Miyazaki F' glutamine amidotransferase YP_002436725.1 2915383 R 883 CDS YP_002436726.1 218887405 7174250 complement(2916268..2917101) 1 NC_011769.1 PFAM: protein of unknown function DUF152; KEGG: dde:Dde_3616 hypothetical protein; hypothetical protein 2917101 7174250 DvMF_2317 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436726.1 2916268 R 883 CDS YP_002436727.1 218887406 7174251 complement(2917092..2917796) 1 NC_011769.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sth:STH1192 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 2917796 7174251 DvMF_2318 Desulfovibrio vulgaris str. 'Miyazaki F' 5-formyltetrahydrofolate cyclo-ligase YP_002436727.1 2917092 R 883 CDS YP_002436728.1 218887407 7174252 2918195..2918872 1 NC_011769.1 KEGG: dde:Dde_3615 phosphoesterase, Icc protein-like; phosphoesterase, Icc protein-like protein 2918872 7174252 DvMF_2319 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoesterase, Icc protein-like protein YP_002436728.1 2918195 D 883 CDS YP_002436729.1 218887408 7174254 complement(2919356..2920219) 1 NC_011769.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: gvi:glr3759 probable 3-hydroxyisobutyrate dehydrogenase; 6-phosphogluconate dehydrogenase 2920219 7174254 DvMF_2320 Desulfovibrio vulgaris str. 'Miyazaki F' 6-phosphogluconate dehydrogenase YP_002436729.1 2919356 R 883 CDS YP_002436730.1 218887409 7174255 complement(2920577..2921281) 1 NC_011769.1 KEGG: rpa:RPA2489 hypothetical protein; hypothetical protein 2921281 7174255 DvMF_2321 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436730.1 2920577 R 883 CDS YP_002436731.1 218887410 7174256 complement(2921623..2924337) 1 NC_011769.1 PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase_; KEGG: emi:Emin_0772 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2924337 7174256 DvMF_2322 Desulfovibrio vulgaris str. 'Miyazaki F' bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_002436731.1 2921623 R 883 CDS YP_002436732.1 218887411 7174257 2924836..2925915 1 NC_011769.1 KEGG: pvi:Cvib_0830 hypothetical protein; hypothetical protein 2925915 7174257 DvMF_2323 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436732.1 2924836 D 883 CDS YP_002436733.1 218887412 7174258 complement(2926030..2929518) 1 NC_011769.1 KEGG: dac:Daci_1508 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 2929518 7174258 DvMF_2324 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor hybrid histidine kinase YP_002436733.1 2926030 R 883 CDS YP_002436734.1 218887413 7174259 complement(2929640..2930539) 1 NC_011769.1 TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bpt:Bpet2825 extracellular solute-binding protein; ectoine/hydroxyectoine ABC transporter solute-binding protein 2930539 7174259 DvMF_2325 Desulfovibrio vulgaris str. 'Miyazaki F' ectoine/hydroxyectoine ABC transporter solute-binding protein YP_002436734.1 2929640 R 883 CDS YP_002436735.1 218887414 7174260 2930828..2931592 1 NC_011769.1 KEGG: dde:Dde_1667 hypothetical protein; hypothetical protein 2931592 7174260 DvMF_2326 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436735.1 2930828 D 883 CDS YP_002436736.1 218887415 7174261 complement(2931804..2933087) 1 NC_011769.1 TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase family protein 2933087 7174261 DvMF_2327 Desulfovibrio vulgaris str. 'Miyazaki F' pyridine nucleotide-disulfide oxidoreductase family protein YP_002436736.1 2931804 R 883 CDS YP_002436737.1 218887416 7174262 complement(2933424..2936039) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_3613 glycosyl transferase domain-containing protein; group 1 glycosyl transferase 2936039 7174262 DvMF_2328 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002436737.1 2933424 R 883 CDS YP_002436738.1 218887417 7174263 complement(2936549..2937583) 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3612 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2937583 7174263 DvMF_2329 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002436738.1 2936549 R 883 CDS YP_002436739.1 218887418 7174264 complement(2937653..2938588) 1 NC_011769.1 PFAM: PP-loop domain protein; KEGG: dde:Dde_3611 hypothetical protein; PP-loop domain-containing protein 2938588 7174264 DvMF_2330 Desulfovibrio vulgaris str. 'Miyazaki F' PP-loop domain-containing protein YP_002436739.1 2937653 R 883 CDS YP_002436740.1 218887419 7174265 complement(2938916..2939167) 1 NC_011769.1 KEGG: dde:Dde_3610 hypothetical protein; hypothetical protein 2939167 7174265 DvMF_2331 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436740.1 2938916 R 883 CDS YP_002436741.1 218887420 7174266 2939655..2940023 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_3609 response regulator receiver domain-containing protein; response regulator receiver protein 2940023 7174266 DvMF_2332 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436741.1 2939655 D 883 CDS YP_002436742.1 218887421 7174267 2940460..2942283 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1356 histidine kinase; integral membrane sensor signal transduction histidine kinase 2942283 7174267 DvMF_2333 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002436742.1 2940460 D 883 CDS YP_002436743.1 218887422 7174268 2942283..2942738 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dol:Dole_1358 response regulator receiver protein; response regulator receiver protein 2942738 7174268 DvMF_2334 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436743.1 2942283 D 883 CDS YP_002436744.1 218887423 7174269 2942958..2943632 1 NC_011769.1 PFAM: peptidase M50; KEGG: dde:Dde_3608 M50 family peptidase; peptidase M50 2943632 7174269 DvMF_2335 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M50 YP_002436744.1 2942958 D 883 CDS YP_002436745.1 218887424 7174270 2943780..2944769 1 NC_011769.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2944769 7174270 DvMF_2336 Desulfovibrio vulgaris str. 'Miyazaki F' tryptophanyl-tRNA synthetase YP_002436745.1 2943780 D 883 CDS YP_002436746.1 218887425 7174271 2945077..2945898 1 NC_011769.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3606 hypothetical protein; hypothetical protein 2945898 7174271 DvMF_2337 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436746.1 2945077 D 883 CDS YP_002436747.1 218887426 7174272 2946206..2946727 1 NC_011769.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: dde:Dde_3605 bifunctional ADP-heptose synthase; rfaE bifunctional protein 2946727 7174272 DvMF_2338 Desulfovibrio vulgaris str. 'Miyazaki F' rfaE bifunctional protein YP_002436747.1 2946206 D 883 CDS YP_002436748.1 218887427 7174273 complement(2946905..2949511) 1 NC_011769.1 PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0630 pyruvate, water dikinase; pyruvate, water dikinase 2949511 7174273 DvMF_2339 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate, water dikinase YP_002436748.1 2946905 R 883 CDS YP_002436749.1 218887428 7174274 complement(2949515..2952328) 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; histidine kinase HAMP region domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0697 response regulator receiver domain-containing protein; Fis family transcriptional regulator 2952328 7174274 DvMF_2340 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436749.1 2949515 R 883 CDS YP_002436750.1 218887429 7174275 2952897..2953190 1 NC_011769.1 KEGG: sfu:Sfum_0625 hypothetical protein; hypothetical protein 2953190 7174275 DvMF_2341 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436750.1 2952897 D 883 CDS YP_002436751.1 218887430 7174276 2953219..2954271 1 NC_011769.1 PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0626 protein of unknown function DUF81; hypothetical protein 2954271 7174276 DvMF_2342 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436751.1 2953219 D 883 CDS YP_002436752.1 218887431 7174277 2954303..2954908 1 NC_011769.1 KEGG: sfu:Sfum_0627 lipoprotein; lipoprotein 2954908 7174277 DvMF_2343 Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein YP_002436752.1 2954303 D 883 CDS YP_002436753.1 218887432 7174278 2954985..2955278 1 NC_011769.1 hypothetical protein 2955278 7174278 DvMF_2344 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436753.1 2954985 D 883 CDS YP_002436754.1 218887433 7174279 2955275..2956111 1 NC_011769.1 KEGG: sfu:Sfum_0629 hypothetical protein; hypothetical protein 2956111 7174279 DvMF_2345 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436754.1 2955275 D 883 CDS YP_002436755.1 218887434 7174280 2956189..2956599 1 NC_011769.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein; response regulator receiver protein 2956599 7174280 DvMF_2346 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436755.1 2956189 D 883 CDS YP_002436756.1 218887435 7174281 complement(2956936..2957868) 1 NC_011769.1 KEGG: dde:Dde_0307 hypothetical protein; hypothetical protein 2957868 7174281 DvMF_2347 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436756.1 2956936 R 883 CDS YP_002436757.1 218887436 7174282 2958252..2959163 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0308 ABC transporter permease; binding-protein-dependent transporters inner membrane component 2959163 7174282 DvMF_2348 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002436757.1 2958252 D 883 CDS YP_002436758.1 218887437 7174283 2959196..2960041 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0309 ABC transporter permease; binding-protein-dependent transporters inner membrane component 2960041 7174283 DvMF_2349 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002436758.1 2959196 D 883 CDS YP_002436759.1 218887438 7174284 2960259..2963261 1 NC_011769.1 KEGG: syf:Synpcc7942_1811 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase 2963261 7174284 DvMF_2350 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC and GAF sensor-containing diguanylate cyclase YP_002436759.1 2960259 D 883 CDS YP_002436760.1 218887439 7174285 complement(2963516..2965378) 1 NC_011769.1 PFAM: aminodeoxychorismate lyase; KEGG: dde:Dde_0315 aminodeoxychorismate lyase; aminodeoxychorismate lyase 2965378 7174285 DvMF_2351 Desulfovibrio vulgaris str. 'Miyazaki F' aminodeoxychorismate lyase YP_002436760.1 2963516 R 883 CDS YP_002436761.1 218887440 7174286 complement(2966062..2966490) 1 NC_011769.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dde:Dde_0314 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF 2966490 7174286 DvMF_2352 Desulfovibrio vulgaris str. 'Miyazaki F' Holliday junction resolvase YqgF YP_002436761.1 2966062 R 883 CDS YP_002436762.1 218887441 7174287 complement(2966817..2970431) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase; KEGG: dde:Dde_0312 oxidoreductase; FAD linked oxidase 2970431 7174287 DvMF_2353 Desulfovibrio vulgaris str. 'Miyazaki F' FAD linked oxidase YP_002436762.1 2966817 R 883 CDS YP_002436763.1 218887442 7174288 2970825..2972345 1 NC_011769.1 KEGG: pph:Ppha_2828 ATPase (AAA+ superfamily)-like protein; ATPase (AAA+ superfamily)-like protein 2972345 7174288 DvMF_2354 Desulfovibrio vulgaris str. 'Miyazaki F' ATPase (AAA+ superfamily)-like protein YP_002436763.1 2970825 D 883 CDS YP_002436764.1 218887443 7174289 complement(2972568..2975126) 1 NC_011769.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: dde:Dde_0555 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2975126 7174289 DvMF_2355 Desulfovibrio vulgaris str. 'Miyazaki F' (NiFe) hydrogenase maturation protein HypF YP_002436764.1 2972568 R 883 CDS YP_002436765.1 218887444 7174290 2975651..2976217 1 NC_011769.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_0556 MerR family transcriptional regulator; XRE family transcriptional regulator 2976217 7174290 DvMF_2356 Desulfovibrio vulgaris str. 'Miyazaki F' XRE family transcriptional regulator YP_002436765.1 2975651 D 883 CDS YP_002436766.1 218887445 7174291 2976231..2977883 1 NC_011769.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0557 acyl-CoA synthetase; AMP-binding protein 2977883 7174291 DvMF_2357 Desulfovibrio vulgaris str. 'Miyazaki F' AMP-binding protein YP_002436766.1 2976231 D 883 CDS YP_002436767.1 218887446 7174292 2978158..2979636 1 NC_011769.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: cau:Caur_1401 L-aspartate oxidase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2979636 7174292 DvMF_2358 Desulfovibrio vulgaris str. 'Miyazaki F' fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_002436767.1 2978158 D 883 CDS YP_002436768.1 218887447 7174293 complement(2980031..2980543) 1 NC_011769.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein 2980543 7174293 DvMF_2359 Desulfovibrio vulgaris str. 'Miyazaki F' peptidoglycan-associated lipoprotein YP_002436768.1 2980031 R 883 CDS YP_002436769.1 218887448 7174294 complement(2980896..2982236) 1 NC_011769.1 TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: hypothetical protein; KEGG: lip:LI0692 periplasmic component of the Tol biopolymer transporter; Tol-Pal system beta propeller repeat-containing protein TolB 2982236 7174294 DvMF_2360 Desulfovibrio vulgaris str. 'Miyazaki F' Tol-Pal system beta propeller repeat-containing protein TolB YP_002436769.1 2980896 R 883 CDS YP_002436770.1 218887449 7174295 complement(2982233..2982724) 1 NC_011769.1 TIGRFAM: TonB family protein; KEGG: dde:Dde_3631 TonB-like; TonB family protein 2982724 7174295 DvMF_2361 Desulfovibrio vulgaris str. 'Miyazaki F' TonB family protein YP_002436770.1 2982233 R 883 CDS YP_002436771.1 218887450 7174296 complement(2982721..2983749) 1 NC_011769.1 TIGRFAM: TonB family protein; protein TolA; KEGG: dde:Dde_3631 TonB-like; protein TolA 2983749 7174296 DvMF_2362 Desulfovibrio vulgaris str. 'Miyazaki F' protein TolA YP_002436771.1 2982721 R 883 CDS YP_002436772.1 218887451 7174297 complement(2983827..2984246) 1 NC_011769.1 TIGRFAM: protein TolR; PFAM: biopolymertransporter ExbD/TolR; KEGG: dde:Dde_3630 biopolymer ExbD/TolR family transporter; protein TolR 2984246 7174297 DvMF_2363 Desulfovibrio vulgaris str. 'Miyazaki F' protein TolR YP_002436772.1 2983827 R 883 CDS YP_002436773.1 218887452 7174298 complement(2984250..2984945) 1 NC_011769.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3629 TolQ protein; protein TolQ 2984945 7174298 DvMF_2364 Desulfovibrio vulgaris str. 'Miyazaki F' protein TolQ YP_002436773.1 2984250 R 883 CDS YP_002436774.1 218887453 7174299 2985557..2987005 1 NC_011769.1 PFAM: outer membrane efflux protein; KEGG: dde:Dde_3627 outer membrane efflux protein; outer membrane efflux protein 2987005 7174299 DvMF_2365 Desulfovibrio vulgaris str. 'Miyazaki F' outer membrane efflux protein YP_002436774.1 2985557 D 883 CDS YP_002436775.1 218887454 7174300 2987218..2987613 1 NC_011769.1 PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein; Fur family ferric uptake regulator 2987613 7174300 DvMF_2366 Desulfovibrio vulgaris str. 'Miyazaki F' Fur family ferric uptake regulator YP_002436775.1 2987218 D 883 CDS YP_002436776.1 218887455 7174301 2988087..2988662 1 NC_011769.1 PFAM: rubrerythrin; KEGG: dde:Dde_1222 rubrerythrin; rubrerythrin 2988662 7174301 DvMF_2367 Desulfovibrio vulgaris str. 'Miyazaki F' rubrerythrin YP_002436776.1 2988087 D 883 CDS YP_002436777.1 218887456 7174302 2988765..2988992 1 NC_011769.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_0689 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 2988992 7174302 DvMF_2368 Desulfovibrio vulgaris str. 'Miyazaki F' rubredoxin-type Fe(Cys)4 protein YP_002436777.1 2988765 D 883 CDS YP_002436778.1 218887457 7174303 complement(2989135..2989950) 1 NC_011769.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_3645 TPR repeat-containing protein; hypothetical protein 2989950 7174303 DvMF_2369 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436778.1 2989135 R 883 CDS YP_002436779.1 218887458 7174304 complement(2990067..2991197) 1 NC_011769.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2991197 7174304 DvMF_2370 Desulfovibrio vulgaris str. 'Miyazaki F' carbamoyl phosphate synthase small subunit YP_002436779.1 2990067 R 883 CDS YP_002436780.1 218887459 7174305 complement(2991194..2992006) 1 NC_011769.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2992006 7174305 DvMF_2371 Desulfovibrio vulgaris str. 'Miyazaki F' 3-deoxy-manno-octulosonate cytidylyltransferase YP_002436780.1 2991194 R 883 CDS YP_002436781.1 218887460 7174306 2992478..2994067 1 NC_011769.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 2994067 prfC 7174306 prfC Desulfovibrio vulgaris str. 'Miyazaki F' peptide chain release factor 3 YP_002436781.1 2992478 D 883 CDS YP_002436782.1 218887461 7174307 complement(2994337..2998836) 1 NC_011769.1 KEGG: mac:MA2013 sensory transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; SMART: PAC repeat-containing protein; multi-sensor hybrid histidine kinase 2998836 7174307 DvMF_2373 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002436782.1 2994337 R 883 CDS YP_002436783.1 218887462 7174308 complement(2998829..3000175) 1 NC_011769.1 KEGG: dde:Dde_0536 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 3000175 7174308 DvMF_2374 Desulfovibrio vulgaris str. 'Miyazaki F' oxygen-independent coproporphyrinogen III oxidase YP_002436783.1 2998829 R 883 CDS YP_002436784.1 218887463 7174309 complement(3000375..3001025) 1 NC_011769.1 PFAM: protein of unknown function DUF208; KEGG: lip:LI0772 hypothetical protein; hypothetical protein 3001025 7174309 DvMF_2375 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436784.1 3000375 R 883 CDS YP_002436785.1 218887464 7174310 complement(3001030..3002505) 1 NC_011769.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: dde:Dde_0537 ribonuclease E; ribonuclease, Rne/Rng family 3002505 7174310 DvMF_2376 Desulfovibrio vulgaris str. 'Miyazaki F' ribonuclease, Rne/Rng family YP_002436785.1 3001030 R 883 CDS YP_002436786.1 218887465 7174311 complement(3002886..3003983) 1 NC_011769.1 PFAM: radical SAM protein; KEGG: dde:Dde_0538 radical SAM domain-containing protein; radical SAM protein 3003983 7174311 DvMF_2377 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002436786.1 3002886 R 883 CDS YP_002436787.1 218887466 7174312 3004589..3005485 1 NC_011769.1 PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dde:Dde_0539 protein-L-isoaspartate methyltransferase-like; tRNA (adenine-N(1)-)-methyltransferase 3005485 7174312 DvMF_2378 Desulfovibrio vulgaris str. 'Miyazaki F' tRNA (adenine-N(1)-)-methyltransferase YP_002436787.1 3004589 D 883 CDS YP_002436788.1 218887467 7174313 3005797..3007779 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0250 ATPase; ABC transporter 3007779 7174313 DvMF_2379 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436788.1 3005797 D 883 CDS YP_002436789.1 218887468 7174314 3007799..3008308 1 NC_011769.1 PFAM: NUDIX hydrolase; KEGG: dde:Dde_0251 mutator MutT protein; NUDIX hydrolase 3008308 7174314 DvMF_2380 Desulfovibrio vulgaris str. 'Miyazaki F' NUDIX hydrolase YP_002436789.1 3007799 D 883 CDS YP_002436790.1 218887469 7174315 3008545..3008985 1 NC_011769.1 PFAM: protein of unknown function DUF606; KEGG: dde:Dde_0252 hypothetical protein; hypothetical protein 3008985 7174315 DvMF_2381 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436790.1 3008545 D 883 CDS YP_002436791.1 218887470 7174316 3009528..3010577 1 NC_011769.1 KEGG: dde:Dde_0254 aspartate semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase NAD - binding; semialdehyde dehydrogenase dimerisation region; aspartate-semialdehyde dehydrogenase 3010577 7174316 DvMF_2382 Desulfovibrio vulgaris str. 'Miyazaki F' aspartate-semialdehyde dehydrogenase YP_002436791.1 3009528 D 883 CDS YP_002436792.1 218887471 7174317 3010731..3011672 1 NC_011769.1 PFAM: aminotransferase class IV; KEGG: dde:Dde_0255 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase; class IV aminotransferase 3011672 7174317 DvMF_2383 Desulfovibrio vulgaris str. 'Miyazaki F' class IV aminotransferase YP_002436792.1 3010731 D 883 CDS YP_002436793.1 218887472 7174318 3011992..3013116 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 3013116 7174318 DvMF_2384 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002436793.1 3011992 D 883 CDS YP_002436794.1 218887473 7174319 complement(3014115..3015689) 1 NC_011769.1 PFAM: cytochrome C552; KEGG: lip:LI1002 chain A, cytochrome C nitrite reductase; nitrite reductase 3015689 7174319 DvMF_2385 Desulfovibrio vulgaris str. 'Miyazaki F' nitrite reductase YP_002436794.1 3014115 R 883 CDS YP_002436795.1 218887474 7174320 complement(3015682..3016158) 1 NC_011769.1 KEGG: lip:LI1001 cytochrome C nitrite reductase small subunit; cytochrome C nitrite reductase small subunit 3016158 7174320 DvMF_2386 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C nitrite reductase small subunit YP_002436795.1 3015682 R 883 CDS YP_002436796.1 218887475 7174321 3016863..3017990 1 NC_011769.1 KEGG: sfu:Sfum_1725 glutamate synthase (NADPH); glutamate synthase 3017990 7174321 DvMF_2387 Desulfovibrio vulgaris str. 'Miyazaki F' glutamate synthase YP_002436796.1 3016863 D 883 CDS YP_002436797.1 218887476 7174322 3017954..3019588 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: sfu:Sfum_1724 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 3019588 7174322 DvMF_2388 Desulfovibrio vulgaris str. 'Miyazaki F' ferredoxin-dependent glutamate synthase YP_002436797.1 3017954 D 883 CDS YP_002436798.1 218887477 7174323 3019951..3022284 1 NC_011769.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase subunit alpha domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3022284 7174323 DvMF_2389 Desulfovibrio vulgaris str. 'Miyazaki F' FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002436798.1 3019951 D 883 CDS YP_002436799.1 218887478 7174324 complement(3022402..3024141) 1 NC_011769.1 KEGG: swo:Swol_0938 arsenite-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase ArsA 3024141 7174324 DvMF_2390 Desulfovibrio vulgaris str. 'Miyazaki F' arsenite-activated ATPase ArsA YP_002436799.1 3022402 R 883 CDS YP_002436800.1 218887479 7174325 complement(3024185..3024508) 1 NC_011769.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: swo:Swol_0937 arsenical resistance operon trans-acting repressor; arsenical resistance operon trans-acting repressor ArsD 3024508 7174325 DvMF_2391 Desulfovibrio vulgaris str. 'Miyazaki F' arsenical resistance operon trans-acting repressor ArsD YP_002436800.1 3024185 R 883 CDS YP_002436801.1 218887480 7174326 complement(3024647..3025000) 1 NC_011769.1 PFAM: regulatory protein ArsR; KEGG: psa:PST_0241 arsenic resistance transcriptional regulator; ArsR family transcriptional regulator 3025000 7174326 DvMF_2392 Desulfovibrio vulgaris str. 'Miyazaki F' ArsR family transcriptional regulator YP_002436801.1 3024647 R 883 CDS YP_002436802.1 218887481 7174327 complement(3025156..3025932) 1 NC_011769.1 hypothetical protein 3025932 7174327 DvMF_2393 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436802.1 3025156 R 883 CDS YP_002436803.1 218887482 7174328 3026504..3026854 1 NC_011769.1 KEGG: pau:PA14_31300 hypothetical protein; hypothetical protein 3026854 7174328 DvMF_2394 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436803.1 3026504 D 883 CDS YP_002436804.1 218887483 7174329 3027028..3028716 1 NC_011769.1 KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 3028716 7174329 DvMF_2395 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002436804.1 3027028 D 883 CDS YP_002436805.1 218887484 7174330 complement(3028863..3029594) 1 NC_011769.1 PFAM: carbonic anhydrase; KEGG: pca:Pcar_2939 carbonic anhydrase; carbonic anhydrase 3029594 7174330 DvMF_2396 Desulfovibrio vulgaris str. 'Miyazaki F' carbonic anhydrase YP_002436805.1 3028863 R 883 CDS YP_002436806.1 218887485 7174331 complement(3029746..3030570) 1 NC_011769.1 KEGG: dde:Dde_0264 hypothetical protein; hypothetical protein 3030570 7174331 DvMF_2397 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436806.1 3029746 R 883 CDS YP_002436807.1 218887486 7174332 complement(3031009..3031941) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rru:Rru_A2273 nickel transporter ATP-binding protein; ABC transporter 3031941 7174332 DvMF_2398 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436807.1 3031009 R 883 CDS YP_002436808.1 218887487 7174333 complement(3031953..3032975) 1 NC_011769.1 PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: kpn:KPN_03853 ATP-binding protein of nickel transporter; ABC transporter 3032975 7174333 DvMF_2399 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436808.1 3031953 R 883 CDS YP_002436809.1 218887488 7174334 complement(3032972..3034093) 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ppw:PputW619_3007 nickel ABC transporter permease subunit NikC; binding-protein-dependent transporters inner membrane component 3034093 7174334 DvMF_2400 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002436809.1 3032972 R 883 CDS YP_002436810.1 218887489 7174335 complement(3034090..3035031) 1 NC_011769.1 with NikACDE is involved in nickel transport into the cell; nickel transporter permease NikB 3035031 7174335 DvMF_2401 Desulfovibrio vulgaris str. 'Miyazaki F' nickel transporter permease NikB YP_002436810.1 3034090 R 883 CDS YP_002436811.1 218887490 7174336 complement(3035450..3037066) 1 NC_011769.1 KEGG: rru:Rru_A2277 nickel ABC transporter periplasmic nickel-binding; TIGRFAM: nickel ABC transporter periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5; nickel ABC transporter substrate-binding protein 3037066 7174336 DvMF_2402 Desulfovibrio vulgaris str. 'Miyazaki F' nickel ABC transporter substrate-binding protein YP_002436811.1 3035450 R 883 CDS YP_002436812.1 218887491 7174337 3037665..3037874 1 NC_011769.1 PFAM: TOBE domain protein; KEGG: mma:MM_0224 molybdenum-pterin-binding-protein; TOBE domain-containing protein 3037874 7174337 DvMF_2403 Desulfovibrio vulgaris str. 'Miyazaki F' TOBE domain-containing protein YP_002436812.1 3037665 D 883 CDS YP_002436813.1 218887492 7174338 complement(3038006..3038593) 1 NC_011769.1 PFAM: protein of unknown function DUF1105; KEGG: bca:BCE_A0238 hypothetical protein; hypothetical protein 3038593 7174338 DvMF_2404 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436813.1 3038006 R 883 CDS YP_002436814.1 218887493 7174339 3039264..3039725 1 NC_011769.1 PFAM: Tir chaperone family protein; KEGG: pcu:pc1105 hypothetical protein; Tir chaperone family protein 3039725 7174339 DvMF_2405 Desulfovibrio vulgaris str. 'Miyazaki F' Tir chaperone family protein YP_002436814.1 3039264 D 883 CDS YP_002436815.1 218887494 7174340 3039862..3041976 1 NC_011769.1 KEGG: fal:FRAAL5796 chromosome partition protein smc; hypothetical protein 3041976 7174340 DvMF_2406 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436815.1 3039862 D 883 CDS YP_002436816.1 218887495 7174341 3042090..3043265 1 NC_011769.1 KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component; ABC transporter periplasmic protein 3043265 7174341 DvMF_2407 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter periplasmic protein YP_002436816.1 3042090 D 883 CDS YP_002436817.1 218887496 7174342 3043276..3045846 1 NC_011769.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP2229 inner membrane transporter; major facilitator superfamily protein 3045846 7174342 DvMF_2408 Desulfovibrio vulgaris str. 'Miyazaki F' major facilitator superfamily protein YP_002436817.1 3043276 D 883 CDS YP_002436818.1 218887497 7174343 3045843..3047543 1 NC_011769.1 KEGG: pin:Ping_3332 hypothetical protein; hypothetical protein 3047543 7174343 DvMF_2409 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436818.1 3045843 D 883 CDS YP_002436819.1 218887498 7174344 complement(3047840..3049822) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: lip:LI1150 regulator; protein serine/threonine phosphatase 3049822 7174344 DvMF_2410 Desulfovibrio vulgaris str. 'Miyazaki F' protein serine/threonine phosphatase YP_002436819.1 3047840 R 883 CDS YP_002436820.1 218887499 7174345 complement(3049838..3051172) 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: lip:LI1151 transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; Fis family transcriptional regulator 3051172 7174345 DvMF_2411 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436820.1 3049838 R 883 CDS YP_002436821.1 218887500 7174346 complement(3051233..3052273) 1 NC_011769.1 TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter; KEGG: lip:LI0551 translocation protein in type III secretion; type III secretion protein, YscU/HrpY family 3052273 7174346 DvMF_2412 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion protein, YscU/HrpY family YP_002436821.1 3051233 R 883 CDS YP_002436822.1 218887501 7174347 complement(3052280..3053116) 1 NC_011769.1 TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: lip:LI0550 type III secretion component protein SctT; type III secretion protein SpaR/YscT/HrcT 3053116 7174347 DvMF_2413 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion protein SpaR/YscT/HrcT YP_002436822.1 3052280 R 883 CDS YP_002436823.1 218887502 7174348 complement(3053124..3053384) 1 NC_011769.1 TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: lip:LI0549 probable translocation protein in type III secretion; type III secretion protein, HrpO family 3053384 7174348 DvMF_2414 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion protein, HrpO family YP_002436823.1 3053124 R 883 CDS YP_002436824.1 218887503 7174349 complement(3053406..3055496) 1 NC_011769.1 TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: lip:LI0548 type III secretion pore protein; type III secretion protein, HrcV family 3055496 7174349 DvMF_2415 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion protein, HrcV family YP_002436824.1 3053406 R 883 CDS YP_002436825.1 218887504 7174350 complement(3055499..3055858) 1 NC_011769.1 PFAM: hypothetical protein; KEGG: lip:LI0547 NA; hypothetical protein 3055858 7174350 DvMF_2416 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436825.1 3055499 R 883 CDS YP_002436826.1 218887505 7174351 complement(3055861..3056229) 1 NC_011769.1 KEGG: lip:LI1152 NA; hypothetical protein 3056229 7174351 DvMF_2417 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436826.1 3055861 R 883 CDS YP_002436827.1 218887506 7174352 complement(3056226..3056627) 1 NC_011769.1 TIGRFAM: type III secretion chaperone SycN; KEGG: lip:LI0546 NA; type III secretion chaperone SycN 3056627 7174352 DvMF_2418 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion chaperone SycN YP_002436827.1 3056226 R 883 CDS YP_002436828.1 218887507 7174353 complement(3056624..3057763) 1 NC_011769.1 TIGRFAM: type III secretion effector delivery regulator, TyeA family; type III secretion regulator YopN/LcrE/InvE/MxiC; PFAM: TyeA domain protein; KEGG: lip:LI1153 outer protein N; type III secretion regulator YopN/LcrE/InvE/MxiC 3057763 7174353 DvMF_2419 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion regulator YopN/LcrE/InvE/MxiC YP_002436828.1 3056624 R 883 CDS YP_002436829.1 218887508 7174354 3058325..3058621 1 NC_011769.1 KEGG: lip:LI0545 NA; hypothetical protein 3058621 7174354 DvMF_2420 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436829.1 3058325 D 883 CDS YP_002436830.1 218887509 7174355 3058804..3059316 1 NC_011769.1 KEGG: lip:LI1154 NA; hypothetical protein 3059316 7174355 DvMF_2421 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436830.1 3058804 D 883 CDS YP_002436831.1 218887510 7174356 3059414..3059917 1 NC_011769.1 TIGRFAM: type III secretion low calcium response chaperone LcrH/SycD; PFAM: Tetratricopeptide TPR_3; KEGG: lip:LI1157 regulatory protein PcrH; type III secretion low calcium response chaperone LcrH/SycD 3059917 7174356 DvMF_2422 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion low calcium response chaperone LcrH/SycD YP_002436831.1 3059414 D 883 CDS YP_002436832.1 218887511 7174357 3059914..3060930 1 NC_011769.1 KEGG: lip:LI1158 NA; hypothetical protein 3060930 7174357 DvMF_2423 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436832.1 3059914 D 883 CDS YP_002436833.1 218887512 7174358 3060941..3061774 1 NC_011769.1 KEGG: bbr:BB1620 outer protein D; hypothetical protein 3061774 7174358 DvMF_2424 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436833.1 3060941 D 883 CDS YP_002436834.1 218887513 7174359 3061858..3062364 1 NC_011769.1 KEGG: bpa:BPP2239 hypothetical protein; hypothetical protein 3062364 7174359 DvMF_2425 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436834.1 3061858 D 883 CDS YP_002436835.1 218887514 7174360 3062464..3064464 1 NC_011769.1 TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: lip:LI1160 type III secretion protein YscC; type III secretion outer membrane pore, YscC/HrcC family 3064464 7174360 DvMF_2426 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion outer membrane pore, YscC/HrcC family YP_002436835.1 3062464 D 883 CDS YP_002436836.1 218887515 7174361 3064461..3066029 1 NC_011769.1 TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; KEGG: lip:LI1161 NA; type III secretion apparatus protein, YscD/HrpQ family 3066029 7174361 DvMF_2427 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion apparatus protein, YscD/HrpQ family YP_002436836.1 3064461 D 883 CDS YP_002436837.1 218887516 7174362 3066022..3066240 1 NC_011769.1 hypothetical protein 3066240 7174362 DvMF_2428 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436837.1 3066022 D 883 CDS YP_002436838.1 218887517 7174363 3066257..3066511 1 NC_011769.1 hypothetical protein 3066511 7174363 DvMF_2429 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436838.1 3066257 D 883 CDS YP_002436839.1 218887518 7174364 3066745..3067110 1 NC_011769.1 KEGG: lip:LI0544 NA; hypothetical protein 3067110 7174364 DvMF_2430 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436839.1 3066745 D 883 CDS YP_002436840.1 218887519 7174365 3067197..3067970 1 NC_011769.1 KEGG: gga:395069 collagen, type II, alpha 1; hypothetical protein 3067970 7174365 DvMF_2431 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436840.1 3067197 D 883 CDS YP_002436841.1 218887520 7174366 3067990..3068823 1 NC_011769.1 TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: lip:LI0543 LscJ; type III secretion apparatus lipoprotein, YscJ/HrcJ family 3068823 7174366 DvMF_2432 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion apparatus lipoprotein, YscJ/HrcJ family YP_002436841.1 3067990 D 883 CDS YP_002436842.1 218887521 7174367 3068833..3069570 1 NC_011769.1 KEGG: lip:LI0542 NA; hypothetical protein 3069570 7174367 DvMF_2433 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436842.1 3068833 D 883 CDS YP_002436843.1 218887522 7174368 3069549..3070166 1 NC_011769.1 TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: flagellar assembly protein FliH; KEGG: lip:LI0541 type III secretion system protein; type III secretion system protein 3070166 7174368 DvMF_2434 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion system protein YP_002436843.1 3069549 D 883 CDS YP_002436844.1 218887523 7174369 3070214..3071530 1 NC_011769.1 KEGG: lip:LI0540 type III secretion system ATPase; TIGRFAM: ATPase, FliI/YscN family; type III secretion apparatus H+-transporting two-sector ATPase; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA; type III secretion system ATPase 3071530 7174369 DvMF_2435 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion system ATPase YP_002436844.1 3070214 D 883 CDS YP_002436845.1 218887524 7174370 3071534..3072037 1 NC_011769.1 PFAM: type III secretion YscO fmaily protein; KEGG: lip:LI0539 hypothetical protein; type III secretion YscO fmaily protein 3072037 7174370 DvMF_2436 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion YscO fmaily protein YP_002436845.1 3071534 D 883 CDS YP_002436846.1 218887525 7174371 3072049..3072813 1 NC_011769.1 TIGRFAM: type III secretion system needle length determinant; KEGG: lip:LI1165 NA; type III secretion system needle length determinant 3072813 7174371 DvMF_2437 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion system needle length determinant YP_002436846.1 3072049 D 883 CDS YP_002436847.1 218887526 7174372 3072806..3074035 1 NC_011769.1 TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: lip:LI1166 translocation protein in type III secretion; type III secretion system apparatus protein YscQ/HrcQ 3074035 7174372 DvMF_2438 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion system apparatus protein YscQ/HrcQ YP_002436847.1 3072806 D 883 CDS YP_002436848.1 218887527 7174373 3074032..3074682 1 NC_011769.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 3074682 7174373 DvMF_2439 Desulfovibrio vulgaris str. 'Miyazaki F' type III secretion system protein YP_002436848.1 3074032 D 883 CDS YP_002436849.1 218887528 7174374 3074712..3075047 1 NC_011769.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: lip:LI1167 anti-anti-sigma factor; anti-sigma-factor antagonist 3075047 7174374 DvMF_2440 Desulfovibrio vulgaris str. 'Miyazaki F' anti-sigma-factor antagonist YP_002436849.1 3074712 D 883 CDS YP_002436850.1 218887529 7174375 3075062..3075478 1 NC_011769.1 KEGG: lip:LI1168 sigma regulatory factor-histidine kinase; anti-sigma regulatory factor, serine/threonine protein kinase 3075478 7174375 DvMF_2441 Desulfovibrio vulgaris str. 'Miyazaki F' anti-sigma regulatory factor, serine/threonine protein kinase YP_002436850.1 3075062 D 883 CDS YP_002436851.1 218887530 7174376 3075945..3076682 1 NC_011769.1 PFAM: lytic transglycosylase catalytic; KEGG: lip:LI1169 transglycosylase; lytic transglycosylase 3076682 7174376 DvMF_2442 Desulfovibrio vulgaris str. 'Miyazaki F' lytic transglycosylase YP_002436851.1 3075945 D 883 CDS YP_002436852.1 218887531 7174378 complement(3077082..3077657) 1 NC_011769.1 KEGG: dde:Dde_3553 hypothetical protein; hypothetical protein 3077657 7174378 DvMF_2443 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436852.1 3077082 R 883 CDS YP_002436853.1 218887532 7174379 complement(3077664..3078584) 1 NC_011769.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: maq:Maqu_2513 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3078584 7174379 DvMF_2444 Desulfovibrio vulgaris str. 'Miyazaki F' short-chain dehydrogenase/reductase SDR YP_002436853.1 3077664 R 883 CDS YP_002436854.1 218887533 7174380 complement(3078778..3079386) 1 NC_011769.1 PFAM: HPP family protein?; KEGG: mgm:Mmc1_0464 HPP family protein+B94; HPP family protein 3079386 7174380 DvMF_2445 Desulfovibrio vulgaris str. 'Miyazaki F' HPP family protein YP_002436854.1 3078778 R 883 CDS YP_002436855.1 218887534 7174381 3079866..3081131 1 NC_011769.1 KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase; phenylacetate-coenzyme A ligase 3081131 7174381 DvMF_2446 Desulfovibrio vulgaris str. 'Miyazaki F' phenylacetate-coenzyme A ligase YP_002436855.1 3079866 D 883 CDS YP_002436856.1 218887535 7174382 3081122..3082807 1 NC_011769.1 PFAM: PDZ/DHR/GLGF domain protein; protein of unknown function DUF399; KEGG: dde:Dde_0541 PDZ/DHR/GLGF; hypothetical protein 3082807 7174382 DvMF_2447 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436856.1 3081122 D 883 CDS YP_002436857.1 218887536 7174383 3083068..3083475 1 NC_011769.1 PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0150; KEGG: ccr:CC_3185 CopG family DNA-binding protein; CopG family transcriptional regulator 3083475 7174383 DvMF_2448 Desulfovibrio vulgaris str. 'Miyazaki F' CopG family transcriptional regulator YP_002436857.1 3083068 D 883 CDS YP_002436858.1 218887537 7174384 3083870..3084880 1 NC_011769.1 KEGG: dde:Dde_0542 DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: zinc finger Fpg domain protein; Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 3084880 7174384 DvMF_2449 Desulfovibrio vulgaris str. 'Miyazaki F' formamidopyrimidine-DNA glycosylase YP_002436858.1 3083870 D 883 CDS YP_002436859.1 218887538 7174385 complement(3084977..3088279) 1 NC_011769.1 PFAM: ComEC/Rec2-related protein; KEGG: dde:Dde_0547 ComEC/Rec2-related protein; ComEC/Rec2-like protein 3088279 7174385 DvMF_2450 Desulfovibrio vulgaris str. 'Miyazaki F' ComEC/Rec2-like protein YP_002436859.1 3084977 R 883 CDS YP_002436860.1 218887539 7174386 complement(3088361..3089614) 1 NC_011769.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3089614 7174386 DvMF_2451 Desulfovibrio vulgaris str. 'Miyazaki F' UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002436860.1 3088361 R 883 CDS YP_002436861.1 218887540 7174388 complement(3090287..3093820) 1 NC_011769.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: dde:Dde_0544 periplasmic sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 3093820 7174388 DvMF_2452 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002436861.1 3090287 R 883 CDS YP_002436862.1 218887541 7174389 complement(3093977..3095767) 1 NC_011769.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: dde:Dde_0543 integral membrane protein MviN; integral membrane protein MviN 3095767 7174389 DvMF_2453 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane protein MviN YP_002436862.1 3093977 R 883 CDS YP_002436863.1 218887542 7174390 3096204..3098195 1 NC_011769.1 KEGG: dde:Dde_0550 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3098195 7174390 DvMF_2454 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_002436863.1 3096204 D 883 CDS YP_002436864.1 218887543 7174391 3098345..3098800 1 NC_011769.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: mag:amb2535 hemerythrin; FOG: CheY-like receiver; hemerythrin-like metal-binding protein 3098800 7174391 DvMF_2455 Desulfovibrio vulgaris str. 'Miyazaki F' hemerythrin-like metal-binding protein YP_002436864.1 3098345 D 883 CDS YP_002436865.1 218887544 7174392 3098955..3099734 1 NC_011769.1 KEGG: dde:Dde_0551 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 3099734 7174392 DvMF_2456 Desulfovibrio vulgaris str. 'Miyazaki F' exodeoxyribonuclease III YP_002436865.1 3098955 D 883 CDS YP_002436866.1 218887545 7174393 complement(3099968..3100159) 1 NC_011769.1 KEGG: dde:Dde_0552 hypothetical protein; hypothetical protein 3100159 7174393 DvMF_2457 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436866.1 3099968 R 883 CDS YP_002436867.1 218887546 7174394 3100909..3101562 1 NC_011769.1 PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: dde:Dde_1258 fumarate reductase, cytochrome b subunit; fumarate reductase respiratory complex transmembrane subunit 3101562 7174394 DvMF_2458 Desulfovibrio vulgaris str. 'Miyazaki F' fumarate reductase respiratory complex transmembrane subunit YP_002436867.1 3100909 D 883 CDS YP_002436868.1 218887547 7174395 3101576..3103393 1 NC_011769.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 3103393 7174395 DvMF_2459 Desulfovibrio vulgaris str. 'Miyazaki F' fumarate reductase flavoprotein subunit YP_002436868.1 3101576 D 883 CDS YP_002436869.1 218887548 7174396 3103544..3104287 1 NC_011769.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 3104287 frdB 7174396 frdB Desulfovibrio vulgaris str. 'Miyazaki F' fumarate reductase iron-sulfur subunit YP_002436869.1 3103544 D 883 CDS YP_002436870.1 218887549 7174397 3104594..3105433 1 NC_011769.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 3105433 7174397 DvMF_2461 Desulfovibrio vulgaris str. 'Miyazaki F' fumarate hydratase YP_002436870.1 3104594 D 883 CDS YP_002436871.1 218887550 7174398 3105748..3106275 1 NC_011769.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: dde:Dde_1254 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta 3106275 7174398 DvMF_2462 Desulfovibrio vulgaris str. 'Miyazaki F' hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta YP_002436871.1 3105748 D 883 CDS YP_002436872.1 218887551 7174399 3106320..3107615 1 NC_011769.1 KEGG: dde:Dde_0554 hypothetical protein; hypothetical protein 3107615 7174399 DvMF_2463 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436872.1 3106320 D 883 CDS YP_002436873.1 218887552 7174400 3108048..3108530 1 NC_011769.1 KEGG: dde:Dde_1347 hypothetical protein; hypothetical protein 3108530 7174400 DvMF_2464 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436873.1 3108048 D 883 CDS YP_002436874.1 218887553 7174401 complement(3109030..3110301) 1 NC_011769.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0072 LysR family transcriptional regulator; LysR family transcriptional regulator 3110301 7174401 DvMF_2465 Desulfovibrio vulgaris str. 'Miyazaki F' LysR family transcriptional regulator YP_002436874.1 3109030 R 883 CDS YP_002436875.1 218887554 7174403 complement(3112109..3112639) 1 NC_011769.1 KEGG: sco:SCO3115 hypothetical protein; hypothetical protein 3112639 7174403 DvMF_2467 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436875.1 3112109 R 883 CDS YP_002436876.1 218887555 7174404 complement(3112698..3113495) 1 NC_011769.1 KEGG: spt:SPA2121 molybdopterin-containing oxidoreductase membrane anchor subunit; molybdopterin-containing oxidoreductase membrane anchor subunit 3113495 7174404 DvMF_2468 Desulfovibrio vulgaris str. 'Miyazaki F' molybdopterin-containing oxidoreductase membrane anchor subunit YP_002436876.1 3112698 R 883 CDS YP_002436877.1 218887556 7174405 complement(3113492..3114058) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sew:SeSA_A0770 molybdopterin-containing oxidoreductase iron-sulfur subunit; 4Fe-4S ferredoxin 3114058 7174405 DvMF_2469 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002436877.1 3113492 R 883 CDS YP_002436878.1 218887557 7174406 complement(3114070..3116325) 1 NC_011769.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit; molybdopterin oxidoreductase 3116325 7174406 DvMF_2470 Desulfovibrio vulgaris str. 'Miyazaki F' molybdopterin oxidoreductase YP_002436878.1 3114070 R 883 CDS YP_002436879.1 218887558 7174407 complement(3116322..3117053) 1 NC_011769.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: stm:STM0610 anaerobic dehydrogenase component; cytoplasmic chaperone TorD family protein 3117053 7174407 DvMF_2471 Desulfovibrio vulgaris str. 'Miyazaki F' cytoplasmic chaperone TorD family protein YP_002436879.1 3116322 R 883 CDS YP_002436880.1 218887559 7174408 complement(3117336..3118361) 1 NC_011769.1 KEGG: dde:Dde_3205 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 3118361 7174408 DvMF_2472 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome d ubiquinol oxidase subunit II YP_002436880.1 3117336 R 883 CDS YP_002436881.1 218887560 7174409 complement(3118416..3119717) 1 NC_011769.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 3119717 7174409 DvMF_2473 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome bd ubiquinol oxidase subunit I YP_002436881.1 3118416 R 883 CDS YP_002436882.1 218887561 7174410 complement(3120353..3121135) 1 NC_011769.1 TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sfu:Sfum_3697 molybdenum ABC transporter periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 3121135 7174410 DvMF_2474 Desulfovibrio vulgaris str. 'Miyazaki F' molybdenum ABC transporter periplasmic molybdate-binding protein YP_002436882.1 3120353 R 883 CDS YP_002436883.1 218887562 7174411 complement(3121132..3122016) 1 NC_011769.1 PFAM: protein of unknown function UPF0066; KEGG: sfu:Sfum_0270 protein of unknown function UPF0066; hypothetical protein 3122016 7174411 DvMF_2475 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436883.1 3121132 R 883 CDS YP_002436884.1 218887563 7174412 3122330..3123688 1 NC_011769.1 PFAM: integrase family protein; TOBE domain protein; KEGG: dde:Dde_3517 molybdenum-pterin binding domain-containing protein; TOBE domain-containing protein 3123688 7174412 DvMF_2476 Desulfovibrio vulgaris str. 'Miyazaki F' TOBE domain-containing protein YP_002436884.1 3122330 D 883 CDS YP_002436885.1 218887564 7174413 complement(3124011..3124793) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_3696 ABC transporter; ABC transporter 3124793 7174413 DvMF_2477 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436885.1 3124011 R 883 CDS YP_002436886.1 218887565 7174414 complement(3124793..3125500) 1 NC_011769.1 TIGRFAM: molybdate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sfu:Sfum_3698 molybdate ABC transporter inner membrane protein; molybdate ABC transporter inner membrane protein 3125500 7174414 DvMF_2478 Desulfovibrio vulgaris str. 'Miyazaki F' molybdate ABC transporter inner membrane protein YP_002436886.1 3124793 R 883 CDS YP_002436887.1 218887566 7174415 complement(3125789..3126997) 1 NC_011769.1 PFAM: beta-lactamase; flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3195 rubredoxin-oxygen oxidoreductase; beta-lactamase 3126997 7174415 DvMF_2479 Desulfovibrio vulgaris str. 'Miyazaki F' beta-lactamase YP_002436887.1 3125789 R 883 CDS YP_002436888.1 218887567 7174416 complement(3127311..3127469) 1 NC_011769.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3194 rubredoxin; rubredoxin-type Fe(Cys)4 protein 3127469 7174416 DvMF_2480 Desulfovibrio vulgaris str. 'Miyazaki F' rubredoxin-type Fe(Cys)4 protein YP_002436888.1 3127311 R 883 CDS YP_002436889.1 218887568 7174417 complement(3127593..3127967) 1 NC_011769.1 TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dde:Dde_3193 desulfoferrodoxin; desulfoferrodoxin 3127967 7174417 DvMF_2481 Desulfovibrio vulgaris str. 'Miyazaki F' desulfoferrodoxin YP_002436889.1 3127593 R 883 CDS YP_002436890.1 218887569 7174418 complement(3128363..3130384) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3130384 7174418 DvMF_2482 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_002436890.1 3128363 R 883 CDS YP_002436891.1 218887570 7174419 complement(3130756..3133971) 1 NC_011769.1 KEGG: hmo:HM1_1611 sensor histidine kinase, TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 3133971 7174419 DvMF_2483 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002436891.1 3130756 R 883 CDS YP_002436892.1 218887571 7174420 complement(3134244..3137258) 1 NC_011769.1 PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dde:Dde_3191 phosphoribosylformylglycinamidine synthase; phosphoribosylformylglycinamidine synthase 3137258 7174420 DvMF_2484 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosylformylglycinamidine synthase YP_002436892.1 3134244 R 883 CDS YP_002436893.1 218887572 7174421 complement(3137784..3138614) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_0283 ABC transporter; ABC transporter 3138614 7174421 DvMF_2485 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002436893.1 3137784 R 883 CDS YP_002436894.1 218887573 7174422 complement(3138605..3139561) 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lip:LI1030 phosphate ABC transporter permease protein; binding-protein-dependent transporters inner membrane component 3139561 7174422 DvMF_2486 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002436894.1 3138605 R 883 CDS YP_002436895.1 218887574 7174423 complement(3139558..3140505) 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sfu:Sfum_0285 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 3140505 7174423 DvMF_2487 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002436895.1 3139558 R 883 CDS YP_002436896.1 218887575 7174424 complement(3140511..3141353) 1 NC_011769.1 TIGRFAM: phosphate binding protein; KEGG: lip:LI1028 phosphate-binding protein; phosphate binding protein 3141353 7174424 DvMF_2488 Desulfovibrio vulgaris str. 'Miyazaki F' phosphate binding protein YP_002436896.1 3140511 R 883 CDS YP_002436897.1 218887576 7174425 complement(3141523..3144033) 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_3190 diguanylate cyclase; diguanylate cyclase 3144033 7174425 DvMF_2489 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002436897.1 3141523 R 883 CDS YP_002436898.1 218887577 7174426 complement(3144234..3145229) 1 NC_011769.1 PFAM: polyprenyl synthetase; KEGG: dde:Dde_3189 trans-hexaprenyltranstransferase; polyprenyl synthetase 3145229 7174426 DvMF_2490 Desulfovibrio vulgaris str. 'Miyazaki F' polyprenyl synthetase YP_002436898.1 3144234 R 883 CDS YP_002436899.1 218887578 7174427 complement(3145360..3146079) 1 NC_011769.1 PFAM: purine or other phosphorylase family 1; KEGG: dde:Dde_3188 hypothetical protein; purine or other phosphorylase family 1 3146079 7174427 DvMF_2491 Desulfovibrio vulgaris str. 'Miyazaki F' purine or other phosphorylase family 1 YP_002436899.1 3145360 R 883 CDS YP_002436900.1 218887579 7174428 complement(3146175..3146324) 1 NC_011769.1 hypothetical protein 3146324 7174428 DvMF_2492 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436900.1 3146175 R 883 CDS YP_002436901.1 218887580 7174429 complement(3146361..3146591) 1 NC_011769.1 hypothetical protein 3146591 7174429 DvMF_2493 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436901.1 3146361 R 883 CDS YP_002436902.1 218887581 7174430 complement(3146629..3147945) 1 NC_011769.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein; nucleotide sugar dehydrogenase 3147945 7174430 DvMF_2494 Desulfovibrio vulgaris str. 'Miyazaki F' nucleotide sugar dehydrogenase YP_002436902.1 3146629 R 883 CDS YP_002436903.1 218887582 7174431 3148169..3148375 1 NC_011769.1 KEGG: mgm:Mmc1_1575 hypothetical protein; hypothetical protein 3148375 7174431 DvMF_2495 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436903.1 3148169 D 883 CDS YP_002436904.1 218887583 7174432 complement(3148492..3149670) 1 NC_011769.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_3185 demethylmenaquinone methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 3149670 7174432 DvMF_2496 Desulfovibrio vulgaris str. 'Miyazaki F' ubiquinone/menaquinone biosynthesis methyltransferase YP_002436904.1 3148492 R 883 CDS YP_002436905.1 218887584 7174433 complement(3149677..3149883) 1 NC_011769.1 KEGG: dde:Dde_3184 hypothetical protein; hypothetical protein 3149883 7174433 DvMF_2497 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436905.1 3149677 R 883 CDS YP_002436906.1 218887585 7174434 complement(3150431..3151990) 1 NC_011769.1 KEGG: dde:Dde_3183 hypothetical protein; hypothetical protein 3151990 7174434 DvMF_2498 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436906.1 3150431 R 883 CDS YP_002436907.1 218887586 7174435 complement(3152356..3152748) 1 NC_011769.1 PFAM: cytochrome C class III; KEGG: dde:Dde_3182 cytochrome C3; cytochrome C class III 3152748 7174435 DvMF_2499 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C class III YP_002436907.1 3152356 R 883 CDS YP_002436908.1 218887587 7174436 complement(3153038..3153829) 1 NC_011769.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3181 precorrin-3 methyltransferase; precorrin-3B C(17)-methyltransferase 3153829 7174436 DvMF_2500 Desulfovibrio vulgaris str. 'Miyazaki F' precorrin-3B C(17)-methyltransferase YP_002436908.1 3153038 R 883 CDS YP_002436909.1 218887588 7174437 complement(3153826..3155109) 1 NC_011769.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dde:Dde_3181 precorrin-3 methyltransferase; cobalamin (vitamin B12) biosynthesis protein CbiG 3155109 7174437 DvMF_2501 Desulfovibrio vulgaris str. 'Miyazaki F' cobalamin (vitamin B12) biosynthesis protein CbiG YP_002436909.1 3153826 R 883 CDS YP_002436910.1 218887589 7174438 complement(3155303..3156580) 1 NC_011769.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3156580 7174438 DvMF_2502 Desulfovibrio vulgaris str. 'Miyazaki F' glutamate-1-semialdehyde aminotransferase YP_002436910.1 3155303 R 883 CDS YP_002436911.1 218887590 7174439 complement(3156882..3157382) 1 NC_011769.1 SMART: regulatory protein AsnC/Lrp family; KEGG: dde:Dde_3179 AsnC family transcriptional regulator; AsnC family transcriptional regulator 3157382 7174439 DvMF_2503 Desulfovibrio vulgaris str. 'Miyazaki F' AsnC family transcriptional regulator YP_002436911.1 3156882 R 883 CDS YP_002436912.1 218887591 7174441 complement(3158862..3159257) 1 NC_011769.1 PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3175 hypothetical protein; hypothetical protein 3159257 7174441 DvMF_2505 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436912.1 3158862 R 883 CDS YP_002436913.1 218887592 7174442 3159706..3161658 1 NC_011769.1 KEGG: dde:Dde_3173 selenocysteine-specific translation elongation factor SelB; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; selenocysteine-specific translation elongation factor 3161658 7174442 DvMF_2506 Desulfovibrio vulgaris str. 'Miyazaki F' selenocysteine-specific translation elongation factor YP_002436913.1 3159706 D 883 CDS YP_002436914.1 218887593 7174443 complement(3161811..3162074) 1 NC_011769.1 KEGG: dde:Dde_3169 hypothetical protein; hypothetical protein 3162074 7174443 DvMF_2507 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436914.1 3161811 R 883 CDS YP_002436915.1 218887594 7174444 complement(3162451..3164721) 1 NC_011769.1 KEGG: dde:Dde_3167 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 3164721 7174444 DvMF_2508 Desulfovibrio vulgaris str. 'Miyazaki F' polynucleotide phosphorylase/polyadenylase YP_002436915.1 3162451 R 883 CDS YP_002436916.1 218887595 7174445 complement(3164952..3165221) 1 NC_011769.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3165221 rpsO 7174445 rpsO Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S15 YP_002436916.1 3164952 R 883 CDS YP_002436917.1 218887596 7174446 complement(3165245..3166171) 1 NC_011769.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: dde:Dde_3165 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 3166171 7174446 DvMF_2510 Desulfovibrio vulgaris str. 'Miyazaki F' tRNA pseudouridine synthase B YP_002436917.1 3165245 R 883 CDS YP_002436918.1 218887597 7174447 complement(3166177..3167169) 1 NC_011769.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein; phosphoesterase RecJ domain-containing protein 3167169 7174447 DvMF_2511 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoesterase RecJ domain-containing protein YP_002436918.1 3166177 R 883 CDS YP_002436919.1 218887598 7174448 complement(3167491..3167799) 1 NC_011769.1 PFAM: protein of unknown function DUF503; KEGG: dde:Dde_3163 hypothetical protein; hypothetical protein 3167799 7174448 DvMF_2512 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436919.1 3167491 R 883 CDS YP_002436920.1 218887599 7174449 complement(3167905..3171144) 1 NC_011769.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3171144 infB 7174449 infB Desulfovibrio vulgaris str. 'Miyazaki F' translation initiation factor IF-2 YP_002436920.1 3167905 R 883 CDS YP_002436921.1 218887600 7174450 complement(3171141..3171392) 1 NC_011769.1 KEGG: ace:Acel_1516 protein of unknown function DUF448; hypothetical protein 3171392 7174450 DvMF_2514 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436921.1 3171141 R 883 CDS YP_002436922.1 218887601 7174451 complement(3171400..3172731) 1 NC_011769.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 3172731 nusA 7174451 nusA Desulfovibrio vulgaris str. 'Miyazaki F' transcription elongation factor NusA YP_002436922.1 3171400 R 883 CDS YP_002436923.1 218887602 7174452 complement(3172755..3173435) 1 NC_011769.1 PFAM: protein of unknown function DUF150; KEGG: dde:Dde_3160 hypothetical protein; hypothetical protein 3173435 7174452 DvMF_2516 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436923.1 3172755 R 883 CDS YP_002436924.1 218887603 7174453 3173879..3174658 1 NC_011769.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3159 flagellar basal-body rod protein; hypothetical protein 3174658 7174453 DvMF_2517 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436924.1 3173879 D 883 CDS YP_002436925.1 218887604 7174454 3174957..3175739 1 NC_011769.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 3175739 flgG 7174454 flgG Desulfovibrio vulgaris str. 'Miyazaki F' flagellar basal body rod protein FlgG YP_002436925.1 3174957 D 883 CDS YP_002436926.1 218887605 7174455 3175941..3176981 1 NC_011769.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: dde:Dde_3157 FlgA family protein; flagella basal body P-ring formation protein FlgA 3176981 7174455 DvMF_2519 Desulfovibrio vulgaris str. 'Miyazaki F' flagella basal body P-ring formation protein FlgA YP_002436926.1 3175941 D 883 CDS YP_002436927.1 218887606 7174456 3177039..3177755 1 NC_011769.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 3177755 flgH 7174456 flgH Desulfovibrio vulgaris str. 'Miyazaki F' flagellar basal body L-ring protein YP_002436927.1 3177039 D 883 CDS YP_002436928.1 218887607 7174457 3178599..3179723 1 NC_011769.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 3179723 flgI 7174457 flgI Desulfovibrio vulgaris str. 'Miyazaki F' flagellar basal body P-ring protein YP_002436928.1 3178599 D 883 CDS YP_002436929.1 218887608 7174458 3179931..3181748 1 NC_011769.1 PFAM: peptidase M23; KEGG: dde:Dde_3154 membrane proteins, metalloendopeptidase-like; peptidase M23 3181748 7174458 DvMF_2522 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M23 YP_002436929.1 3179931 D 883 CDS YP_002436930.1 218887609 7174459 3181753..3182217 1 NC_011769.1 PFAM: FlgN family protein; KEGG: dde:Dde_3153 hypothetical protein; FlgN family protein 3182217 7174459 DvMF_2523 Desulfovibrio vulgaris str. 'Miyazaki F' FlgN family protein YP_002436930.1 3181753 D 883 CDS YP_002436931.1 218887610 7174460 3182218..3184326 1 NC_011769.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3152 flagellar hook-associated protein; flagellar hook-associated protein FlgK 3184326 7174460 DvMF_2524 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar hook-associated protein FlgK YP_002436931.1 3182218 D 883 CDS YP_002436932.1 218887611 7174461 3184345..3185868 1 NC_011769.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL; flagellar hook-associated protein 3 3185868 7174461 DvMF_2525 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar hook-associated protein 3 YP_002436932.1 3184345 D 883 CDS YP_002436933.1 218887612 7174462 3185881..3186120 1 NC_011769.1 PFAM: carbon storage regulator; KEGG: dde:Dde_3150 carbon storage regulator; carbon storage regulator CsrA 3186120 7174462 DvMF_2526 Desulfovibrio vulgaris str. 'Miyazaki F' carbon storage regulator CsrA YP_002436933.1 3185881 D 883 CDS YP_002436934.1 218887613 7174463 3186096..3186647 1 NC_011769.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 3186647 7174463 DvMF_2527 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar assembly protein FliW YP_002436934.1 3186096 D 883 CDS YP_002436935.1 218887614 7174464 complement(3186814..3188553) 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sfu:Sfum_1010 transcriptional regulator, NifA subfamily, fis family; Fis family transcriptional regulator 3188553 7174464 DvMF_2528 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436935.1 3186814 R 883 CDS YP_002436936.1 218887615 7174465 complement(3188885..3191479) 1 NC_011769.1 PFAM: MscS Mechanosensitive ion channel; KEGG: lip:LI1173 3264: small-conductance mechanosensitive channel; mechanosensitive ion channel MscS 3191479 7174465 DvMF_2529 Desulfovibrio vulgaris str. 'Miyazaki F' mechanosensitive ion channel MscS YP_002436936.1 3188885 R 883 CDS YP_002436937.1 218887616 7174466 3191904..3193049 1 NC_011769.1 KEGG: dde:Dde_0292 hypothetical protein; hypothetical protein 3193049 7174466 DvMF_2530 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436937.1 3191904 D 883 CDS YP_002436938.1 218887617 7174467 3193053..3194360 1 NC_011769.1 KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like; cytochrome bd-type quinol oxidase subunit 1-like protein 3194360 7174467 DvMF_2531 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome bd-type quinol oxidase subunit 1-like protein YP_002436938.1 3193053 D 883 CDS YP_002436939.1 218887618 7174468 3194419..3196350 1 NC_011769.1 PFAM: cytochrome C class III; KEGG: dde:Dde_0561 cytochrome C family protein; cytochrome C class III 3196350 7174468 DvMF_2532 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C class III YP_002436939.1 3194419 D 883 CDS YP_002436940.1 218887619 7174469 3196674..3199706 1 NC_011769.1 Contains selenocysteine; TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dde:Dde_0813 formate dehydrogenase subunit alpha; formate dehydrogenase subunit alpha 3199706 7174469 DvMF_2533 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase subunit alpha YP_002436940.1 3196674 D 883 CDS YP_002436941.1 218887620 7174470 3199714..3200466 1 NC_011769.1 KEGG: dde:Dde_3514 formate dehydrogenase subunit beta; formate dehydrogenase subunit beta 3200466 7174470 DvMF_2534 Desulfovibrio vulgaris str. 'Miyazaki F' formate dehydrogenase subunit beta YP_002436941.1 3199714 D 883 CDS YP_002436942.1 218887621 7174471 complement(3200580..3201257) 1 NC_011769.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: azo:azo2986 methyltransferase; methyltransferase type 11 3201257 7174471 DvMF_2535 Desulfovibrio vulgaris str. 'Miyazaki F' methyltransferase type 11 YP_002436942.1 3200580 R 883 CDS YP_002436943.1 218887622 7174472 complement(3201285..3202718) 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3234 two component Fis family transcriptional regulator; Fis family transcriptional regulator 3202718 7174472 DvMF_2536 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436943.1 3201285 R 883 CDS YP_002436944.1 218887623 7174473 complement(3202729..3206397) 1 NC_011769.1 KEGG: gsu:GSU0842 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 3206397 7174473 DvMF_2537 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor hybrid histidine kinase YP_002436944.1 3202729 R 883 CDS YP_002436945.1 218887624 7174474 3206740..3207027 1 NC_011769.1 KEGG: dde:Dde_0976 hypothetical protein; hypothetical protein 3207027 7174474 DvMF_2538 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436945.1 3206740 D 883 CDS YP_002436946.1 218887625 7174475 3207324..3209369 1 NC_011769.1 KEGG: mac:MA1270 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 3209369 7174475 DvMF_2539 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor signal transduction histidine kinase YP_002436946.1 3207324 D 883 CDS YP_002436947.1 218887626 7174476 3209426..3209878 1 NC_011769.1 PFAM: response regulator receiver; KEGG: mag:amb2979 FOG: CheY-like receiver; response regulator receiver protein 3209878 7174476 DvMF_2540 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436947.1 3209426 D 883 CDS YP_002436948.1 218887627 7174477 3210013..3212637 1 NC_011769.1 KEGG: pca:Pcar_0053 two component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 3212637 7174477 DvMF_2541 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002436948.1 3210013 D 883 CDS YP_002436949.1 218887628 7174478 3212733..3214526 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2159 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3214526 7174478 DvMF_2542 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002436949.1 3212733 D 883 CDS YP_002436950.1 218887629 7174479 3214600..3214965 1 NC_011769.1 PFAM: response regulator receiver; KEGG: lch:Lcho_0734 response regulator receiver protein; response regulator receiver protein 3214965 7174479 DvMF_2543 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436950.1 3214600 D 883 CDS YP_002436951.1 218887630 7174480 3214962..3216506 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: glo:Glov_0589 multi-sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 3216506 7174480 DvMF_2544 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor signal transduction histidine kinase YP_002436951.1 3214962 D 883 CDS YP_002436952.1 218887631 7174481 3216844..3217653 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mex:Mext_3509 metal-dependent phosphohydrolase HD sub domain; metal dependent phosphohydrolase 3217653 7174481 DvMF_2545 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002436952.1 3216844 D 883 CDS YP_002436953.1 218887632 7174482 3217923..3218381 1 NC_011769.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0235 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 3218381 7174482 DvMF_2546 Desulfovibrio vulgaris str. 'Miyazaki F' BadM/Rrf2 family transcriptional regulator YP_002436953.1 3217923 D 883 CDS YP_002436954.1 218887633 7174483 3218793..3219587 1 NC_011769.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_3719 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 3219587 7174483 DvMF_2547 Desulfovibrio vulgaris str. 'Miyazaki F' BadM/Rrf2 family transcriptional regulator YP_002436954.1 3218793 D 883 CDS YP_002436955.1 218887634 7174484 3219640..3222225 1 NC_011769.1 KEGG: dde:Dde_3718 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 3222225 7174484 DvMF_2548 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002436955.1 3219640 D 883 CDS YP_002436956.1 218887635 7174485 3222222..3223562 1 NC_011769.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3717 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 3223562 7174485 DvMF_2549 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver sensor signal transduction histidine kinase YP_002436956.1 3222222 D 883 CDS YP_002436957.1 218887636 7174486 complement(3223559..3225616) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 3225616 7174486 DvMF_2550 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor signal transduction histidine kinase YP_002436957.1 3223559 R 883 CDS YP_002436958.1 218887637 7174487 complement(3225890..3226858) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein; response regulator receiver protein 3226858 7174487 DvMF_2551 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436958.1 3225890 R 883 CDS YP_002436959.1 218887638 7174488 complement(3226974..3227891) 1 NC_011769.1 PFAM: UspA domain protein; KEGG: dde:Dde_3712 universal stress protein; UspA domain-containing protein 3227891 7174488 DvMF_2552 Desulfovibrio vulgaris str. 'Miyazaki F' UspA domain-containing protein YP_002436959.1 3226974 R 883 CDS YP_002436960.1 218887639 7174489 complement(3227897..3228463) 1 NC_011769.1 KEGG: dde:Dde_3711 hypothetical protein; hypothetical protein 3228463 7174489 DvMF_2553 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436960.1 3227897 R 883 CDS YP_002436961.1 218887640 7174490 complement(3228549..3229013) 1 NC_011769.1 KEGG: dde:Dde_3710 acidic cytochrome C3; acidic cytochrome C3 3229013 7174490 DvMF_2554 Desulfovibrio vulgaris str. 'Miyazaki F' acidic cytochrome C3 YP_002436961.1 3228549 R 883 CDS YP_002436962.1 218887641 7174491 complement(3229034..3230371) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3709 ferredoxin 4Fe-4S; 4Fe-4S ferredoxin 3230371 7174491 DvMF_2555 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002436962.1 3229034 R 883 CDS YP_002436963.1 218887642 7174492 complement(3230467..3231126) 1 NC_011769.1 KEGG: dde:Dde_3708 hypothetical protein; hypothetical protein 3231126 7174492 DvMF_2556 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436963.1 3230467 R 883 CDS YP_002436964.1 218887643 7174493 complement(3231147..3232502) 1 NC_011769.1 KEGG: dde:Dde_3707 hypothetical protein; hypothetical protein 3232502 7174493 DvMF_2557 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436964.1 3231147 R 883 CDS YP_002436965.1 218887644 7174494 3233135..3234550 1 NC_011769.1 KEGG: dde:Dde_1011 hypothetical protein; hypothetical protein 3234550 7174494 DvMF_2558 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436965.1 3233135 D 883 CDS YP_002436966.1 218887645 7174495 3235070..3235828 1 NC_011769.1 hypothetical protein 3235828 7174495 DvMF_2559 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436966.1 3235070 D 883 CDS YP_002436967.1 218887646 7174496 3236072..3237073 1 NC_011769.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bmj:BMULJ_02621 AraC subfamily transcriptional regulator; AraC family transcriptional regulator 3237073 7174496 DvMF_2560 Desulfovibrio vulgaris str. 'Miyazaki F' AraC family transcriptional regulator YP_002436967.1 3236072 D 883 CDS YP_002436968.1 218887647 7174497 3237191..3237337 1 NC_011769.1 KEGG: ptm:GSPATT00013277001 hypothetical protein; hypothetical protein 3237337 7174497 DvMF_2561 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436968.1 3237191 D 883 CDS YP_002436969.1 218887648 7174498 3237334..3237930 1 NC_011769.1 PFAM: ThiJ/PfpI domain protein; KEGG: gur:Gura_3528 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 3237930 7174498 DvMF_2562 Desulfovibrio vulgaris str. 'Miyazaki F' ThiJ/PfpI domain-containing protein YP_002436969.1 3237334 D 883 CDS YP_002436970.1 218887649 7174500 complement(3238334..3238870) 1 NC_011769.1 PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein; hypothetical protein 3238870 7174500 DvMF_2563 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436970.1 3238334 R 883 CDS YP_002436971.1 218887650 7174501 3239471..3241990 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3241990 7174501 DvMF_2564 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_002436971.1 3239471 D 883 CDS YP_002436972.1 218887651 7174502 3242150..3243184 1 NC_011769.1 KEGG: cch:Cag_0501 periplasmic phosphate binding protein; phosphate ABC transporter substrate-binding protein 3243184 7174502 DvMF_2565 Desulfovibrio vulgaris str. 'Miyazaki F' phosphate ABC transporter substrate-binding protein YP_002436972.1 3242150 D 883 CDS YP_002436973.1 218887652 7174503 3243276..3244520 1 NC_011769.1 TIGRFAM: phosphate ABC transporter inner membrane protein PstC; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cch:Cag_0500 phosphate ABC transporter permease PstC; phosphate ABC transporter permease 3244520 7174503 DvMF_2566 Desulfovibrio vulgaris str. 'Miyazaki F' phosphate ABC transporter permease YP_002436973.1 3243276 D 883 CDS YP_002436974.1 218887653 7174504 3244529..3245698 1 NC_011769.1 TIGRFAM: phosphate ABC transporter inner membrane protein PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: csa:Csal_1478 phosphate transporter permease 2; phosphate ABC transporter permease 3245698 7174504 DvMF_2567 Desulfovibrio vulgaris str. 'Miyazaki F' phosphate ABC transporter permease YP_002436974.1 3244529 D 883 CDS YP_002436975.1 218887654 7174505 complement(3245796..3247028) 1 NC_011769.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dol:Dole_1842 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 3247028 7174505 DvMF_2568 Desulfovibrio vulgaris str. 'Miyazaki F' filamentation induced by cAMP protein fic YP_002436975.1 3245796 R 883 CDS YP_002436976.1 218887655 7174506 3247690..3248673 1 NC_011769.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: dde:Dde_0483 ATPase; ATPase 3248673 7174506 DvMF_2569 Desulfovibrio vulgaris str. 'Miyazaki F' ATPase YP_002436976.1 3247690 D 883 CDS YP_002436977.1 218887656 7174507 3248682..3250268 1 NC_011769.1 KEGG: dde:Dde_0484 hypothetical protein; hypothetical protein 3250268 7174507 DvMF_2570 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436977.1 3248682 D 883 CDS YP_002436978.1 218887657 7174508 3250271..3250729 1 NC_011769.1 KEGG: dde:Dde_0485 hypothetical protein; hypothetical protein 3250729 7174508 DvMF_2571 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436978.1 3250271 D 883 CDS YP_002436979.1 218887658 7174509 complement(3251081..3252637) 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: mxa:MXAN_0172 sigma-54 dependent DNA-binding response regulator; Fis family transcriptional regulator 3252637 7174509 DvMF_2572 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436979.1 3251081 R 883 CDS YP_002436980.1 218887659 7174510 complement(3252637..3254838) 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: psa:PST_4054 sensory box histidine kinase; PAS/PAC sensor signal transduction histidine kinase 3254838 7174510 DvMF_2573 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor signal transduction histidine kinase YP_002436980.1 3252637 R 883 CDS YP_002436981.1 218887660 7174511 complement(3254835..3255962) 1 NC_011769.1 PFAM: osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: mxa:MXAN_0167 osmosensitive K+ channel His kinase sensor domain/universal stress domain protein; osmosensitive K channel His kinase sensor 3255962 7174511 DvMF_2574 Desulfovibrio vulgaris str. 'Miyazaki F' osmosensitive K channel His kinase sensor YP_002436981.1 3254835 R 883 CDS YP_002436982.1 218887661 7174512 complement(3256314..3256907) 1 NC_011769.1 KEGG: pna:Pnap_3602 potassium-transporting ATPase, C subunit; TIGRFAM: potassium ABC transporter ATPase; PFAM: K transporting ATPase KdpC subunit; potassium ABC transporter ATPase 3256907 7174512 DvMF_2575 Desulfovibrio vulgaris str. 'Miyazaki F' potassium ABC transporter ATPase YP_002436982.1 3256314 R 883 CDS YP_002436983.1 218887662 7174513 complement(3256929..3259025) 1 NC_011769.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase subunit beta; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: aba:acid345_0511 potassium-translocating P-type ATPase subunit beta; K+-transporting ATPase subunit beta 3259025 7174513 DvMF_2576 Desulfovibrio vulgaris str. 'Miyazaki F' K+-transporting ATPase subunit beta YP_002436983.1 3256929 R 883 CDS YP_002436984.1 218887663 7174514 complement(3259050..3260888) 1 NC_011769.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase A 3260888 7174514 DvMF_2577 Desulfovibrio vulgaris str. 'Miyazaki F' potassium-transporting ATPase A YP_002436984.1 3259050 R 883 CDS YP_002436985.1 218887664 7174515 complement(3261114..3261203) 1 NC_011769.1 TIGRFAM: K+-transporting ATPase, F subunit; PFAM: K+transporting ATPase F subunit; K+-transporting ATPase subunit F 3261203 7174515 DvMF_2578 Desulfovibrio vulgaris str. 'Miyazaki F' K+-transporting ATPase subunit F YP_002436985.1 3261114 R 883 CDS YP_002436986.1 218887665 7174516 3261685..3262623 1 NC_011769.1 PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_3135 ArsR family transcriptional regulator; ArsR family transcriptional regulator 3262623 7174516 DvMF_2579 Desulfovibrio vulgaris str. 'Miyazaki F' ArsR family transcriptional regulator YP_002436986.1 3261685 D 883 CDS YP_002436987.1 218887666 7174517 3263021..3264460 1 NC_011769.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 3264460 7174517 DvMF_2580 Desulfovibrio vulgaris str. 'Miyazaki F' S-adenosyl-L-homocysteine hydrolase YP_002436987.1 3263021 D 883 CDS YP_002436988.1 218887667 7174518 complement(3264547..3265524) 1 NC_011769.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rxy:Rxyl_2873 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 3265524 7174518 DvMF_2581 Desulfovibrio vulgaris str. 'Miyazaki F' cation diffusion facilitator family transporter YP_002436988.1 3264547 R 883 CDS YP_002436989.1 218887668 7174519 3265869..3266933 1 NC_011769.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 3266933 7174519 DvMF_2582 Desulfovibrio vulgaris str. 'Miyazaki F' dihydroxyacetone kinase subunit DhaK YP_002436989.1 3265869 D 883 CDS YP_002436990.1 218887669 7174520 3267361..3267993 1 NC_011769.1 TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: dde:Dde_1179 DAK2 domain-containing protein; dihydroxyacetone kinase subunit DhaL 3267993 7174520 DvMF_2583 Desulfovibrio vulgaris str. 'Miyazaki F' dihydroxyacetone kinase subunit DhaL YP_002436990.1 3267361 D 883 CDS YP_002436991.1 218887670 7174521 3267997..3270537 1 NC_011769.1 KEGG: dde:Dde_1180 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; dihydroxyacetone kinase, phosphotransfer subunit; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; PTS system fructose subfamily IIA component; PEP-utilising protein mobile region; PEP-utilising protein domain protein; phosphoenolpyruvate-protein phosphotransferase 3270537 7174521 DvMF_2584 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoenolpyruvate-protein phosphotransferase YP_002436991.1 3267997 D 883 CDS YP_002436992.1 218887671 7174522 complement(3270985..3271296) 1 NC_011769.1 PFAM: anti-sigma-28 factor FlgM family protein; KEGG: dde:Dde_0638 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM 3271296 7174522 DvMF_2585 Desulfovibrio vulgaris str. 'Miyazaki F' anti-sigma-28 factor FlgM YP_002436992.1 3270985 R 883 CDS YP_002436993.1 218887672 7174523 complement(3271343..3271759) 1 NC_011769.1 KEGG: dde:Dde_0639 hypothetical protein; hypothetical protein 3271759 7174523 DvMF_2586 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002436993.1 3271343 R 883 CDS YP_002436994.1 218887673 7174524 3272312..3272962 1 NC_011769.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3272962 7174524 DvMF_2587 Desulfovibrio vulgaris str. 'Miyazaki F' Maf-like protein YP_002436994.1 3272312 D 883 CDS YP_002436995.1 218887674 7174525 3273040..3273564 1 NC_011769.1 PFAM: phosphatidylglycerophosphatase A; KEGG: dde:Dde_0641 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A 3273564 7174525 DvMF_2588 Desulfovibrio vulgaris str. 'Miyazaki F' phosphatidylglycerophosphatase A YP_002436995.1 3273040 D 883 CDS YP_002436996.1 218887675 7174526 complement(3273801..3274532) 1 NC_011769.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: rpc:RPC_0776 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3274532 7174526 DvMF_2589 Desulfovibrio vulgaris str. 'Miyazaki F' lysine exporter protein LysE/YggA YP_002436996.1 3273801 R 883 CDS YP_002436997.1 218887676 7174527 complement(3275128..3275523) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: glo:Glov_1742 response regulator receiver protein; response regulator receiver protein 3275523 7174527 DvMF_2590 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002436997.1 3275128 R 883 CDS YP_002436998.1 218887677 7174528 complement(3275689..3276141) 1 NC_011769.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0647 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 3276141 7174528 DvMF_2591 Desulfovibrio vulgaris str. 'Miyazaki F' BadM/Rrf2 family transcriptional regulator YP_002436998.1 3275689 R 883 CDS YP_002436999.1 218887678 7174529 complement(3276251..3276637) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein; Fis family transcriptional regulator 3276637 7174529 DvMF_2592 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002436999.1 3276251 R 883 CDS YP_002437000.1 218887679 7174530 complement(3276808..3278199) 1 NC_011769.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6; hypothetical protein 3278199 7174530 DvMF_2593 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437000.1 3276808 R 883 CDS YP_002437001.1 218887680 7174531 complement(3278256..3278936) 1 NC_011769.1 KEGG: dde:Dde_0649 hmc operon protein 5; hmc operon protein 5 3278936 7174531 DvMF_2594 Desulfovibrio vulgaris str. 'Miyazaki F' hmc operon protein 5 YP_002437001.1 3278256 R 883 CDS YP_002437002.1 218887681 7174532 complement(3279077..3279214) 1 NC_011769.1 KEGG: dde:Dde_0650 hmc operon protein 4; hmc operon protein 4 3279214 7174532 DvMF_2595 Desulfovibrio vulgaris str. 'Miyazaki F' hmc operon protein 4 YP_002437002.1 3279077 R 883 CDS YP_002437003.1 218887682 7174533 complement(3279234..3280400) 1 NC_011769.1 PFAM: polysulphide reductase NrfD; KEGG: dde:Dde_0651 hmc operon protein 3; polysulphide reductase NrfD 3280400 7174533 DvMF_2596 Desulfovibrio vulgaris str. 'Miyazaki F' polysulphide reductase NrfD YP_002437003.1 3279234 R 883 CDS YP_002437004.1 218887683 7174534 complement(3280402..3281520) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein; 4Fe-4S ferredoxin 3281520 7174534 DvMF_2597 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002437004.1 3280402 R 883 CDS YP_002437005.1 218887684 7174535 complement(3281542..3283212) 1 NC_011769.1 PFAM: cytochrome C class III; KEGG: dde:Dde_0653 high-molecular-weight cytochrome C; cytochrome C class III 3283212 7174535 DvMF_2598 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C class III YP_002437005.1 3281542 R 883 CDS YP_002437006.1 218887685 7174536 3283978..3284826 1 NC_011769.1 PFAM: xylose isomerase; KEGG: dde:Dde_0655 AP endonuclease; xylose isomerase 3284826 7174536 DvMF_2599 Desulfovibrio vulgaris str. 'Miyazaki F' xylose isomerase YP_002437006.1 3283978 D 883 CDS YP_002437007.1 218887686 7174537 complement(3284950..3285975) 1 NC_011769.1 PFAM: beta-lactamase; KEGG: bpt:Bpet0311 metallo-beta-lactamase superfamily protein; beta-lactamase 3285975 7174537 DvMF_2600 Desulfovibrio vulgaris str. 'Miyazaki F' beta-lactamase YP_002437007.1 3284950 R 883 CDS YP_002437008.1 218887687 7174538 complement(3286232..3287632) 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0879 two component Fis family transcriptional regulator; Fis family transcriptional regulator 3287632 7174538 DvMF_2601 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002437008.1 3286232 R 883 CDS YP_002437009.1 218887688 7174539 complement(3287629..3290469) 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3290469 7174539 DvMF_2602 Desulfovibrio vulgaris str. 'Miyazaki F' integral membrane sensor signal transduction histidine kinase YP_002437009.1 3287629 R 883 CDS YP_002437010.1 218887689 7174540 3290980..3292089 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: drm:Dred_1866 conserved hypothetical protein 698; hypothetical protein 3292089 7174540 DvMF_2603 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437010.1 3290980 D 883 CDS YP_002437011.1 218887690 7174541 3292114..3292509 1 NC_011769.1 KEGG: cbd:CBUD_1070 biotin carboxylase; hypothetical protein 3292509 7174541 DvMF_2604 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437011.1 3292114 D 883 CDS YP_002437012.1 218887691 7174542 3292666..3293109 1 NC_011769.1 PFAM: UspA domain protein; KEGG: pna:Pnap_2298 UspA domain protein; UspA domain-containing protein 3293109 7174542 DvMF_2605 Desulfovibrio vulgaris str. 'Miyazaki F' UspA domain-containing protein YP_002437012.1 3292666 D 883 CDS YP_002437013.1 218887692 7174543 complement(3293623..3294069) 1 NC_011769.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: cvi:CV_1360 large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein 3294069 7174543 DvMF_2606 Desulfovibrio vulgaris str. 'Miyazaki F' large conductance mechanosensitive channel protein YP_002437013.1 3293623 R 883 CDS YP_002437014.1 218887693 7174544 3294740..3295858 1 NC_011769.1 PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0612 high-affinity branched chain amino acid ABC transporter periplasmic branched chain amino acid-binding protein; extracellular ligand-binding receptor 3295858 7174544 DvMF_2607 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular ligand-binding receptor YP_002437014.1 3294740 D 883 CDS YP_002437015.1 218887694 7174545 3295961..3296869 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_0611 high-affinity branched-chain amino acid ABC transporter permease; inner-membrane translocator 3296869 7174545 DvMF_2608 Desulfovibrio vulgaris str. 'Miyazaki F' inner-membrane translocator YP_002437015.1 3295961 D 883 CDS YP_002437016.1 218887695 7174546 3297151..3298398 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: sat:SYN_00787 branched-chain amino acid transporter permease; inner-membrane translocator 3298398 7174546 DvMF_2609 Desulfovibrio vulgaris str. 'Miyazaki F' inner-membrane translocator YP_002437016.1 3297151 D 883 CDS YP_002437017.1 218887696 7174547 3298398..3299210 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0609 ATPase; ABC transporter 3299210 7174547 DvMF_2610 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437017.1 3298398 D 883 CDS YP_002437018.1 218887697 7174548 3299203..3299907 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0608 ATPase; ABC transporter 3299907 7174548 DvMF_2611 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437018.1 3299203 D 883 CDS YP_002437019.1 218887698 7174549 complement(3300432..3301799) 1 NC_011769.1 PFAM: pyruvate carboxyltransferase; KEGG: met:M446_3580 homocitrate synthase; pyruvate carboxyltransferase 3301799 7174549 DvMF_2612 Desulfovibrio vulgaris str. 'Miyazaki F' pyruvate carboxyltransferase YP_002437019.1 3300432 R 883 CDS YP_002437020.1 218887699 7174550 3302404..3303234 1 NC_011769.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; nitrogenase reductase 3303234 nifH 7174550 nifH Desulfovibrio vulgaris str. 'Miyazaki F' nitrogenase reductase YP_002437020.1 3302404 D 883 CDS YP_002437021.1 218887700 7174551 3303336..3303686 1 NC_011769.1 PFAM: nitrogen regulatory protein P-II; KEGG: sfu:Sfum_1018 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3303686 7174551 DvMF_2614 Desulfovibrio vulgaris str. 'Miyazaki F' nitrogen regulatory protein P-II YP_002437021.1 3303336 D 883 CDS YP_002437022.1 218887701 7174552 3303683..3304057 1 NC_011769.1 PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1345 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3304057 7174552 DvMF_2615 Desulfovibrio vulgaris str. 'Miyazaki F' nitrogen regulatory protein P-II YP_002437022.1 3303683 D 883 CDS YP_002437023.1 218887702 7174553 3304289..3305923 1 NC_011769.1 KEGG: sfu:Sfum_1016 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit alpha 3305923 7174553 DvMF_2616 Desulfovibrio vulgaris str. 'Miyazaki F' nitrogenase molybdenum-iron protein subunit alpha YP_002437023.1 3304289 D 883 CDS YP_002437024.1 218887703 7174554 3305945..3307321 1 NC_011769.1 KEGG: sfu:Sfum_1015 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit beta 3307321 7174554 DvMF_2617 Desulfovibrio vulgaris str. 'Miyazaki F' nitrogenase molybdenum-iron protein subunit beta YP_002437024.1 3305945 D 883 CDS YP_002437025.1 218887704 7174555 3307621..3308880 1 NC_011769.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM protein; KEGG: cpc:Cpar_1626 nitrogenase cofactor biosynthesis protein NifB; dinitrogenase iron-molybdenum cofactor biosynthesis protein 3308880 7174555 DvMF_2618 Desulfovibrio vulgaris str. 'Miyazaki F' dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_002437025.1 3307621 D 883 CDS YP_002437026.1 218887705 7174556 3308905..3309207 1 NC_011769.1 KEGG: cpb:Cphamn1_1759 ferredoxin 2Fe-2S; ferredoxin 2Fe-2S 3309207 7174556 DvMF_2619 Desulfovibrio vulgaris str. 'Miyazaki F' ferredoxin 2Fe-2S YP_002437026.1 3308905 D 883 CDS YP_002437027.1 218887706 7174557 3309366..3310790 1 NC_011769.1 functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE 3310790 7174557 DvMF_2620 Desulfovibrio vulgaris str. 'Miyazaki F' nitrogenase molybdenum-cofactor biosynthesis protein NifE YP_002437027.1 3309366 D 883 CDS YP_002437028.1 218887707 7174558 3310801..3312417 1 NC_011769.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: sfu:Sfum_1012 nitrogenase; nitrogenase 3312417 7174558 DvMF_2621 Desulfovibrio vulgaris str. 'Miyazaki F' nitrogenase YP_002437028.1 3310801 D 883 CDS YP_002437029.1 218887708 7174559 3312435..3313718 1 NC_011769.1 KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; nitrogenase cofactor biosynthesis protein NifB 3313718 7174559 DvMF_2622 Desulfovibrio vulgaris str. 'Miyazaki F' nitrogenase cofactor biosynthesis protein NifB YP_002437029.1 3312435 D 883 CDS YP_002437030.1 218887709 7174560 complement(3313975..3314430) 1 NC_011769.1 PFAM: rhodanese; KEGG: mem:Memar_2054 rhodanese domain protein; rhodanese 3314430 7174560 DvMF_2623 Desulfovibrio vulgaris str. 'Miyazaki F' rhodanese YP_002437030.1 3313975 R 883 CDS YP_002437031.1 218887710 7174561 3314777..3315259 1 NC_011769.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit; KEGG: dde:Dde_3130 acetolactate synthase, small subunit; acetolactate synthase small subunit 3315259 7174561 DvMF_2624 Desulfovibrio vulgaris str. 'Miyazaki F' acetolactate synthase small subunit YP_002437031.1 3314777 D 883 CDS YP_002437032.1 218887711 7174562 3315507..3316481 1 NC_011769.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: dde:Dde_3129 phosphate butyryltransferase; phosphate butyryltransferase 3316481 7174562 DvMF_2625 Desulfovibrio vulgaris str. 'Miyazaki F' phosphate butyryltransferase YP_002437032.1 3315507 D 883 CDS YP_002437033.1 218887712 7174563 3316532..3317893 1 NC_011769.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 3317893 7174563 DvMF_2626 Desulfovibrio vulgaris str. 'Miyazaki F' butyrate kinase YP_002437033.1 3316532 D 883 CDS YP_002437034.1 218887713 7174564 3318289..3318849 1 NC_011769.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_3127 TetR family transcriptional regulator; TetR family transcriptional regulator 3318849 7174564 DvMF_2627 Desulfovibrio vulgaris str. 'Miyazaki F' TetR family transcriptional regulator YP_002437034.1 3318289 D 883 CDS YP_002437035.1 218887714 7174565 complement(3319089..3320864) 1 NC_011769.1 KEGG: dde:Dde_3125 hypothetical protein; hypothetical protein 3320864 7174565 DvMF_2628 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437035.1 3319089 R 883 CDS YP_002437036.1 218887715 7174566 complement(3321102..3321518) 1 NC_011769.1 PFAM: cupin; KEGG: mba:Mbar_A1827 hypothetical protein; cupin 3321518 7174566 DvMF_2629 Desulfovibrio vulgaris str. 'Miyazaki F' cupin YP_002437036.1 3321102 R 883 CDS YP_002437037.1 218887716 7174567 complement(3321715..3324138) 1 NC_011769.1 KEGG: dde:Dde_3124 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SMART: RNA binding S1 domain protein; penicillin-binding protein 3324138 7174567 DvMF_2630 Desulfovibrio vulgaris str. 'Miyazaki F' penicillin-binding protein YP_002437037.1 3321715 R 883 CDS YP_002437038.1 218887717 7174568 complement(3324150..3324980) 1 NC_011769.1 KEGG: dde:Dde_3123 hypothetical protein; hypothetical protein 3324980 7174568 DvMF_2631 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437038.1 3324150 R 883 CDS YP_002437039.1 218887718 7174569 complement(3324982..3326772) 1 NC_011769.1 KEGG: dde:Dde_3122 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; dolichyl-phosphate-mannose-protein mannosyltransferase family protein 3326772 7174569 DvMF_2632 Desulfovibrio vulgaris str. 'Miyazaki F' dolichyl-phosphate-mannose-protein mannosyltransferase family protein YP_002437039.1 3324982 R 883 CDS YP_002437040.1 218887719 7174570 complement(3327308..3328690) 1 NC_011769.1 PFAM: aldehyde dehydrogenase_; KEGG: dsy:DSY1102 hypothetical protein; aldehyde dehydrogenase 3328690 7174570 DvMF_2633 Desulfovibrio vulgaris str. 'Miyazaki F' aldehyde dehydrogenase YP_002437040.1 3327308 R 883 CDS YP_002437041.1 218887720 7174571 3329371..3330762 1 NC_011769.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_3119 hypothetical protein; FAD dependent oxidoreductase 3330762 7174571 DvMF_2634 Desulfovibrio vulgaris str. 'Miyazaki F' FAD dependent oxidoreductase YP_002437041.1 3329371 D 883 CDS YP_002437042.1 218887721 7174572 3331033..3331260 1 NC_011769.1 KEGG: dde:Dde_3118 hypothetical protein; hypothetical protein 3331260 7174572 DvMF_2635 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437042.1 3331033 D 883 CDS YP_002437043.1 218887722 7174573 complement(3331467..3332336) 1 NC_011769.1 KEGG: dde:Dde_3117 hypothetical protein; hypothetical protein 3332336 7174573 DvMF_2636 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437043.1 3331467 R 883 CDS YP_002437044.1 218887723 7174575 3333700..3335124 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: mag:amb3301 response regulator; diguanylate cyclase with extracellular sensor 3335124 7174575 DvMF_2637 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase with extracellular sensor YP_002437044.1 3333700 D 883 CDS YP_002437045.1 218887724 7174576 complement(3335161..3336594) 1 NC_011769.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: bvi:Bcep1808_4142 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 3336594 7174576 DvMF_2638 Desulfovibrio vulgaris str. 'Miyazaki F' UDP-N-acetylglucosamine 2-epimerase YP_002437045.1 3335161 R 883 CDS YP_002437046.1 218887725 7174577 3337135..3337593 1 NC_011769.1 KEGG: dde:Dde_1333 hypothetical protein; hypothetical protein 3337593 7174577 DvMF_2639 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437046.1 3337135 D 883 CDS YP_002437047.1 218887726 7174578 3337856..3340723 1 NC_011769.1 KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 3340723 7174578 DvMF_2640 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor signal transduction histidine kinase YP_002437047.1 3337856 D 883 CDS YP_002437048.1 218887727 7174579 3340971..3341144 1 NC_011769.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 3341144 tatA 7174579 tatA Desulfovibrio vulgaris str. 'Miyazaki F' twin arginine translocase protein A YP_002437048.1 3340971 D 883 CDS YP_002437049.1 218887728 7174580 complement(3341320..3342693) 1 NC_011769.1 KEGG: dde:Dde_3102 hypothetical protein; hypothetical protein 3342693 7174580 DvMF_2642 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437049.1 3341320 R 883 CDS YP_002437050.1 218887729 7174581 3343209..3344381 1 NC_011769.1 PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_3100 response regulator receiver (CheY-like) modulated CheW protein; chemotaxis protein CheW 3344381 7174581 DvMF_2643 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheW YP_002437050.1 3343209 D 883 CDS YP_002437051.1 218887730 7174582 complement(3345182..3347155) 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; SMART: ATPase AAA; KEGG: dde:Dde_3097 two component Fis family transcriptional regulator; Fis family transcriptional regulator 3347155 7174582 DvMF_2644 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002437051.1 3345182 R 883 CDS YP_002437052.1 218887731 7174583 complement(3347266..3348558) 1 NC_011769.1 PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase; peptidase U32 3348558 7174583 DvMF_2645 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase U32 YP_002437052.1 3347266 R 883 CDS YP_002437053.1 218887732 7174584 complement(3348664..3349548) 1 NC_011769.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dde:Dde_3094 phosphoesterase PHP-like; PHP domain-containing protein 3349548 7174584 DvMF_2646 Desulfovibrio vulgaris str. 'Miyazaki F' PHP domain-containing protein YP_002437053.1 3348664 R 883 CDS YP_002437054.1 218887733 7174585 3349861..3350061 1 NC_011769.1 PFAM: protein of unknown function DUF343; KEGG: dde:Dde_3093 hypothetical protein; hypothetical protein 3350061 7174585 DvMF_2647 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437054.1 3349861 D 883 CDS YP_002437055.1 218887734 7174586 3350334..3350747 1 NC_011769.1 PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3092 HSP20 family protein; heat shock protein Hsp20 3350747 7174586 DvMF_2648 Desulfovibrio vulgaris str. 'Miyazaki F' heat shock protein Hsp20 YP_002437055.1 3350334 D 883 CDS YP_002437056.1 218887735 7174587 3350757..3351314 1 NC_011769.1 PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3091 HSP20 family protein; heat shock protein Hsp20 3351314 7174587 DvMF_2649 Desulfovibrio vulgaris str. 'Miyazaki F' heat shock protein Hsp20 YP_002437056.1 3350757 D 883 CDS YP_002437057.1 218887736 7174588 3351493..3352041 1 NC_011769.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: dde:Dde_3090 phosphodiesterase; phosphodiesterase 3352041 7174588 DvMF_2650 Desulfovibrio vulgaris str. 'Miyazaki F' phosphodiesterase YP_002437057.1 3351493 D 883 CDS YP_002437058.1 218887737 7174589 3352099..3353250 1 NC_011769.1 PFAM: dihydrouridine synthase; KEGG: dde:Dde_3089 dihydrouridine synthase family protein; dihydrouridine synthase 3353250 7174589 DvMF_2651 Desulfovibrio vulgaris str. 'Miyazaki F' dihydrouridine synthase YP_002437058.1 3352099 D 883 CDS YP_002437059.1 218887738 7174590 3353408..3353779 1 NC_011769.1 PFAM: regulatory protein MerR; KEGG: bja:bll4578 transcriptional regulatory protein; MerR family transcriptional regulator 3353779 7174590 DvMF_2652 Desulfovibrio vulgaris str. 'Miyazaki F' MerR family transcriptional regulator YP_002437059.1 3353408 D 883 CDS YP_002437060.1 218887739 7174591 3353841..3354257 1 NC_011769.1 PFAM: carboxymuconolactone decarboxylase; KEGG: mag:amb3965 hypothetical protein; carboxymuconolactone decarboxylase 3354257 7174591 DvMF_2653 Desulfovibrio vulgaris str. 'Miyazaki F' carboxymuconolactone decarboxylase YP_002437060.1 3353841 D 883 CDS YP_002437061.1 218887740 7174592 complement(3354429..3354938) 1 NC_011769.1 KEGG: dac:Daci_5716 acetyltransferase; acetyltransferase 3354938 7174592 DvMF_2654 Desulfovibrio vulgaris str. 'Miyazaki F' acetyltransferase YP_002437061.1 3354429 R 883 CDS YP_002437062.1 218887741 7174593 complement(3355152..3355688) 1 NC_011769.1 hypothetical protein 3355688 7174593 DvMF_2655 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437062.1 3355152 R 883 CDS YP_002437063.1 218887742 7174594 complement(3355963..3356385) 1 NC_011769.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_3083 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3356385 7174594 DvMF_2656 Desulfovibrio vulgaris str. 'Miyazaki F' glyoxalase/bleomycin resistance protein/dioxygenase YP_002437063.1 3355963 R 883 CDS YP_002437064.1 218887743 7174595 complement(3356517..3357470) 1 NC_011769.1 KEGG: dde:Dde_3081 serine O-acetyltransferase; serine O-acetyltransferase 3357470 7174595 DvMF_2657 Desulfovibrio vulgaris str. 'Miyazaki F' serine O-acetyltransferase YP_002437064.1 3356517 R 883 CDS YP_002437065.1 218887744 7174596 complement(3357529..3358461) 1 NC_011769.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: dde:Dde_3080 cysteine synthase; cysteine synthase 3358461 7174596 DvMF_2658 Desulfovibrio vulgaris str. 'Miyazaki F' cysteine synthase YP_002437065.1 3357529 R 883 CDS YP_002437066.1 218887745 7174597 complement(3358663..3359877) 1 NC_011769.1 TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class-III; KEGG: dde:Dde_3079 cysteine desulfurase; cysteine desulfurase NifS 3359877 7174597 DvMF_2659 Desulfovibrio vulgaris str. 'Miyazaki F' cysteine desulfurase NifS YP_002437066.1 3358663 R 883 CDS YP_002437067.1 218887746 7174598 complement(3359874..3360719) 1 NC_011769.1 TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dde:Dde_3078 Fe-S cluster assembly protein NifU; Fe-S cluster assembly protein NifU 3360719 7174598 DvMF_2660 Desulfovibrio vulgaris str. 'Miyazaki F' Fe-S cluster assembly protein NifU YP_002437067.1 3359874 R 883 CDS YP_002437068.1 218887747 7174599 complement(3360927..3361910) 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_3077 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3361910 7174599 DvMF_2661 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002437068.1 3360927 R 883 CDS YP_002437069.1 218887748 7174600 complement(3362242..3363258) 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_3077 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3363258 7174600 DvMF_2662 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002437069.1 3362242 R 883 CDS YP_002437070.1 218887749 7174601 3363574..3365157 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_3074 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3365157 7174601 DvMF_2663 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_002437070.1 3363574 D 883 CDS YP_002437071.1 218887750 7174602 3365822..3367024 1 NC_011769.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: mag:amb4535 Zn-dependent protease with chaperone function; PDZ/DHR/GLGF domain-containing protein 3367024 7174602 DvMF_2664 Desulfovibrio vulgaris str. 'Miyazaki F' PDZ/DHR/GLGF domain-containing protein YP_002437071.1 3365822 D 883 CDS YP_002437072.1 218887751 7174603 complement(3367154..3368788) 1 NC_011769.1 KEGG: dde:Dde_1218 hypothetical protein; hypothetical protein 3368788 7174603 DvMF_2665 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437072.1 3367154 R 883 CDS YP_002437073.1 218887752 7174604 3369374..3369790 1 NC_011769.1 PFAM: protein of unknown function UPF0047; KEGG: bra:BRADO6457 hypothetical protein; hypothetical protein 3369790 7174604 DvMF_2666 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437073.1 3369374 D 883 CDS YP_002437074.1 218887753 7174605 complement(3369866..3370837) 1 NC_011769.1 KEGG: dde:Dde_2939 hypothetical protein; hypothetical protein 3370837 7174605 DvMF_2667 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437074.1 3369866 R 883 CDS YP_002437075.1 218887754 7174606 complement(3371117..3371827) 1 NC_011769.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2940 hypothetical protein; type IV pilus assembly PilZ 3371827 7174606 DvMF_2668 Desulfovibrio vulgaris str. 'Miyazaki F' type IV pilus assembly PilZ YP_002437075.1 3371117 R 883 CDS YP_002437076.1 218887755 7174607 complement(3371918..3372388) 1 NC_011769.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 3372388 rnhA 7174607 rnhA Desulfovibrio vulgaris str. 'Miyazaki F' ribonuclease H YP_002437076.1 3371918 R 883 CDS YP_002437077.1 218887756 7174608 complement(3372508..3373029) 1 NC_011769.1 KEGG: dde:Dde_2942 hypothetical protein; hypothetical protein 3373029 7174608 DvMF_2670 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437077.1 3372508 R 883 CDS YP_002437078.1 218887757 7174609 complement(3373042..3374847) 1 NC_011769.1 PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; KEGG: dde:Dde_2943 aldehyde:ferredoxin oxidoreductase, tungsten-containing; aldehyde ferredoxin oxidoreductase 3374847 7174609 DvMF_2671 Desulfovibrio vulgaris str. 'Miyazaki F' aldehyde ferredoxin oxidoreductase YP_002437078.1 3373042 R 883 CDS YP_002437079.1 218887758 7174610 complement(3374837..3375379) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2944 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 3375379 7174610 DvMF_2672 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002437079.1 3374837 R 883 CDS YP_002437080.1 218887759 7174611 complement(3375453..3376847) 1 NC_011769.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: dde:Dde_2945 phosphomannomutase; phosphomannomutase 3376847 7174611 DvMF_2673 Desulfovibrio vulgaris str. 'Miyazaki F' phosphomannomutase YP_002437080.1 3375453 R 883 CDS YP_002437081.1 218887760 7174612 3376931..3378097 1 NC_011769.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: dde:Dde_2946 HflK protein; HflK protein 3378097 7174612 DvMF_2674 Desulfovibrio vulgaris str. 'Miyazaki F' HflK protein YP_002437081.1 3376931 D 883 CDS YP_002437082.1 218887761 7174613 3378099..3378953 1 NC_011769.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: dde:Dde_2947 HflC protein; HflC protein 3378953 7174613 DvMF_2675 Desulfovibrio vulgaris str. 'Miyazaki F' HflC protein YP_002437082.1 3378099 D 883 CDS YP_002437083.1 218887762 7174614 3379339..3380034 1 NC_011769.1 PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dde:Dde_2949 DNA-binding protein; phage repressor 3380034 7174614 DvMF_2676 Desulfovibrio vulgaris str. 'Miyazaki F' phage repressor YP_002437083.1 3379339 D 883 CDS YP_002437084.1 218887763 7174615 3380356..3382266 1 NC_011769.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: azo:azo3685 hybrid sensor and regulator protein; response regulator receiver sensor hybrid histidine kinase 3382266 7174615 DvMF_2677 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver sensor hybrid histidine kinase YP_002437084.1 3380356 D 883 CDS YP_002437085.1 218887764 7174616 3382609..3384705 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2951 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 3384705 7174616 DvMF_2678 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor signal transduction histidine kinase YP_002437085.1 3382609 D 883 CDS YP_002437086.1 218887765 7174617 3385000..3386460 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_2952 two component Fis family transcriptional regulator; Fis family transcriptional regulator 3386460 7174617 DvMF_2679 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002437086.1 3385000 D 883 CDS YP_002437087.1 218887766 7174618 3387457..3388110 1 NC_011769.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: saz:Sama_0143 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3388110 7174618 DvMF_2680 Desulfovibrio vulgaris str. 'Miyazaki F' 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002437087.1 3387457 D 883 CDS YP_002437088.1 218887767 7174619 complement(3388459..3390144) 1 NC_011769.1 PFAM: ribonuclease BN; KEGG: dde:Dde_3064 ribonuclease BN; ribonuclease BN 3390144 7174619 DvMF_2681 Desulfovibrio vulgaris str. 'Miyazaki F' ribonuclease BN YP_002437088.1 3388459 R 883 CDS YP_002437089.1 218887768 7174620 3390230..3391501 1 NC_011769.1 KEGG: dde:Dde_3065 membrane-bound lytic murein transglycosylase B-like; membrane-bound lytic murein transglycosylase B-like protein 3391501 7174620 DvMF_2682 Desulfovibrio vulgaris str. 'Miyazaki F' membrane-bound lytic murein transglycosylase B-like protein YP_002437089.1 3390230 D 883 CDS YP_002437090.1 218887769 7174621 3391849..3395925 1 NC_011769.1 KEGG: rru:Rru_A2406 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 3395925 7174621 DvMF_2683 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002437090.1 3391849 D 883 CDS YP_002437091.1 218887770 7174622 complement(3395988..3397061) 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3069 amino acid ABC transporter permease; binding-protein-dependent transporters inner membrane component 3397061 7174622 DvMF_2684 Desulfovibrio vulgaris str. 'Miyazaki F' binding-protein-dependent transporters inner membrane component YP_002437091.1 3395988 R 883 CDS YP_002437092.1 218887771 7174623 complement(3397166..3398032) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_3070 extracellular solute-binding protein; family 3 extracellular solute-binding protein 3398032 7174623 DvMF_2685 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002437092.1 3397166 R 883 CDS YP_002437093.1 218887772 7174624 complement(3398121..3399071) 1 NC_011769.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3071 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 3399071 7174624 DvMF_2686 Desulfovibrio vulgaris str. 'Miyazaki F' polar amino acid ABC transporter inner membrane protein YP_002437093.1 3398121 R 883 CDS YP_002437094.1 218887773 7174625 complement(3399310..3400563) 1 NC_011769.1 PFAM: polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit; polysulphide reductase NrfD 3400563 7174625 DvMF_2687 Desulfovibrio vulgaris str. 'Miyazaki F' polysulphide reductase NrfD YP_002437094.1 3399310 R 883 CDS YP_002437095.1 218887774 7174626 complement(3400573..3401340) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2934 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit; 4Fe-4S ferredoxin 3401340 7174626 DvMF_2688 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002437095.1 3400573 R 883 CDS YP_002437096.1 218887775 7174627 complement(3401353..3403428) 1 NC_011769.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit; molybdopterin oxidoreductase 3403428 7174627 DvMF_2689 Desulfovibrio vulgaris str. 'Miyazaki F' molybdopterin oxidoreductase YP_002437096.1 3401353 R 883 CDS YP_002437097.1 218887776 7174628 complement(3403441..3404076) 1 NC_011769.1 KEGG: dde:Dde_2932 hypothetical protein; hypothetical protein 3404076 7174628 DvMF_2690 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437097.1 3403441 R 883 CDS YP_002437098.1 218887777 7174629 complement(3404242..3405747) 1 NC_011769.1 KEGG: dde:Dde_2931 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 3405747 7174629 DvMF_2691 Desulfovibrio vulgaris str. 'Miyazaki F' mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_002437098.1 3404242 R 883 CDS YP_002437099.1 218887778 7174630 complement(3405744..3406334) 1 NC_011769.1 KEGG: dde:Dde_2930 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 3406334 7174630 DvMF_2692 Desulfovibrio vulgaris str. 'Miyazaki F' dTDP-4-dehydrorhamnose 3,5-epimerase YP_002437099.1 3405744 R 883 CDS YP_002437100.1 218887779 7174631 3406530..3408245 1 NC_011769.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2929 histidine kinase; histidine kinase 3408245 7174631 DvMF_2693 Desulfovibrio vulgaris str. 'Miyazaki F' histidine kinase YP_002437100.1 3406530 D 883 CDS YP_002437101.1 218887780 7174633 3409003..3410208 1 NC_011769.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: mca:MCA1146 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 3410208 7174633 DvMF_2694 Desulfovibrio vulgaris str. 'Miyazaki F' GDP-mannose 4,6-dehydratase YP_002437101.1 3409003 D 883 CDS YP_002437102.1 218887781 7174634 3410205..3411170 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_2900 GDP-fucose synthetase NAD dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3411170 7174634 DvMF_2695 Desulfovibrio vulgaris str. 'Miyazaki F' NAD-dependent epimerase/dehydratase YP_002437102.1 3410205 D 883 CDS YP_002437103.1 218887782 7174635 3411353..3412444 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: rpb:RPB_3840 glycosyl transferase, family 2; family 2 glycosyl transferase 3412444 7174635 DvMF_2696 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002437103.1 3411353 D 883 CDS YP_002437104.1 218887783 7174636 3412438..3413529 1 NC_011769.1 PFAM: acyltransferase 3; KEGG: vpa:VPA0771 lipopolysaccharide modification acyltransferase; acyltransferase 3 3413529 7174636 DvMF_2697 Desulfovibrio vulgaris str. 'Miyazaki F' acyltransferase 3 YP_002437104.1 3412438 D 883 CDS YP_002437105.1 218887784 7174637 3413532..3415271 1 NC_011769.1 TIGRFAM: methyltransferase FkbM family; KEGG: dde:Dde_2875 hypothetical protein; FkbM family methyltransferase 3415271 7174637 DvMF_2698 Desulfovibrio vulgaris str. 'Miyazaki F' FkbM family methyltransferase YP_002437105.1 3413532 D 883 CDS YP_002437106.1 218887785 7174638 3415268..3416110 1 NC_011769.1 PFAM: glycosyl transferase family 11; KEGG: dde:Dde_2877 alpha-1,2-fucosyltransferase; glycosyl transferase family protein 3416110 7174638 DvMF_2699 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002437106.1 3415268 D 883 CDS YP_002437107.1 218887786 7174639 3416110..3417864 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: glo:Glov_2749 protein of unknown function DUF268; family 2 glycosyl transferase 3417864 7174639 DvMF_2700 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002437107.1 3416110 D 883 CDS YP_002437108.1 218887787 7174640 3417871..3418695 1 NC_011769.1 PFAM: ABC transporter; KEGG: dde:Dde_2896 ABC transporter permease; ABC transporter 3418695 7174640 DvMF_2701 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437108.1 3417871 D 883 CDS YP_002437109.1 218887788 7174641 3418698..3419981 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ote:Oter_3246 ABC transporter; ABC transporter 3419981 7174641 DvMF_2702 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437109.1 3418698 D 883 CDS YP_002437110.1 218887789 7174642 3419978..3422101 1 NC_011769.1 KEGG: tde:TDE1418 hypothetical protein; hypothetical protein 3422101 7174642 DvMF_2703 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437110.1 3419978 D 883 CDS YP_002437111.1 218887790 7174643 3422107..3422943 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4087 glycosyl transferase, family 2; family 2 glycosyl transferase 3422943 7174643 DvMF_2704 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002437111.1 3422107 D 883 CDS YP_002437112.1 218887791 7174644 3422957..3423961 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_2583 glycosyl transferase family 2; family 2 glycosyl transferase 3423961 7174644 DvMF_2705 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002437112.1 3422957 D 883 CDS YP_002437113.1 218887792 7174645 complement(3424085..3425206) 1 NC_011769.1 KEGG: met:M446_1074 glycosyl transferase group 1; group 1 glycosyl transferase 3425206 7174645 DvMF_2706 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002437113.1 3424085 R 883 CDS YP_002437114.1 218887793 7174646 complement(3425484..3427406) 1 NC_011769.1 KEGG: cpc:Cpar_0784 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: CI repressor; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein 3427406 7174646 DvMF_2707 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor protein YP_002437114.1 3425484 R 883 CDS YP_002437115.1 218887794 7174647 3427558..3428799 1 NC_011769.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 3428799 7174647 DvMF_2708 Desulfovibrio vulgaris str. 'Miyazaki F' aromatic hydrocarbon degradation membrane protein YP_002437115.1 3427558 D 883 CDS YP_002437116.1 218887795 7174648 complement(3428898..3429662) 1 NC_011769.1 PFAM: nitroreductase; KEGG: gsu:GSU2426 hypothetical protein; nitroreductase 3429662 7174648 DvMF_2709 Desulfovibrio vulgaris str. 'Miyazaki F' nitroreductase YP_002437116.1 3428898 R 883 CDS YP_002437117.1 218887796 7174649 3430110..3431855 1 NC_011769.1 PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3431855 7174649 DvMF_2710 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002437117.1 3430110 D 883 CDS YP_002437118.1 218887797 7174650 3432071..3432541 1 NC_011769.1 KEGG: dde:Dde_2858 cytochrome C family protein; cytochrome C family protein 3432541 7174650 DvMF_2711 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C family protein YP_002437118.1 3432071 D 883 CDS YP_002437119.1 218887798 7174651 3432551..3434572 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3434572 7174651 DvMF_2712 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_002437119.1 3432551 D 883 CDS YP_002437120.1 218887799 7174652 complement(3434744..3436714) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU2681 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 3436714 7174652 DvMF_2713 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002437120.1 3434744 R 883 CDS YP_002437121.1 218887800 7174653 complement(3436730..3437710) 1 NC_011769.1 PFAM: protein of unknown function DUF362; KEGG: sat:SYN_02059 hypothetical cytosolic protein; hypothetical protein 3437710 7174653 DvMF_2714 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437121.1 3436730 R 883 CDS YP_002437122.1 218887801 7174654 complement(3438194..3438523) 1 NC_011769.1 hypothetical protein 3438523 7174654 DvMF_2715 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437122.1 3438194 R 883 CDS YP_002437123.1 218887802 7174655 complement(3439055..3439375) 1 NC_011769.1 hypothetical protein 3439375 7174655 DvMF_2716 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437123.1 3439055 R 883 CDS YP_002437124.1 218887803 7174656 3439993..3441798 1 NC_011769.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3441798 7174656 DvMF_2717 Desulfovibrio vulgaris str. 'Miyazaki F' GTP-binding protein LepA YP_002437124.1 3439993 D 883 CDS YP_002437125.1 218887804 7174657 3442323..3442919 1 NC_011769.1 KEGG: lip:LI0923 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 3442919 7174657 DvMF_2718 Desulfovibrio vulgaris str. 'Miyazaki F' signal peptidase I YP_002437125.1 3442323 D 883 CDS YP_002437126.1 218887805 7174658 3443316..3444026 1 NC_011769.1 KEGG: dde:Dde_2808 competence protein ComM; competence protein ComM 3444026 7174658 DvMF_2719 Desulfovibrio vulgaris str. 'Miyazaki F' competence protein ComM YP_002437126.1 3443316 D 883 CDS YP_002437127.1 218887806 7174659 3444023..3444577 1 NC_011769.1 KEGG: sat:SYN_00794 phosphatidylserine/phosphatidylglycerophosphate related protein; phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein 3444577 7174659 DvMF_2720 Desulfovibrio vulgaris str. 'Miyazaki F' phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein YP_002437127.1 3444023 D 883 CDS YP_002437128.1 218887807 7174660 3444821..3445171 1 NC_011769.1 hypothetical protein 3445171 7174660 DvMF_2721 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437128.1 3444821 D 883 CDS YP_002437129.1 218887808 7174661 3445161..3446624 1 NC_011769.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pdi:BDI_2144 hypothetical protein; radical SAM protein 3446624 7174661 DvMF_2722 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002437129.1 3445161 D 883 CDS YP_002437130.1 218887809 7174662 3446611..3447765 1 NC_011769.1 PFAM: radical SAM protein; KEGG: pzu:PHZ_c2419 hypothetical protein; radical SAM protein 3447765 7174662 DvMF_2723 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002437130.1 3446611 D 883 CDS YP_002437131.1 218887810 7174663 3447755..3448021 1 NC_011769.1 KEGG: ret:RHE_PA00005 hypothetical protein; hypothetical protein 3448021 7174663 DvMF_2724 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437131.1 3447755 D 883 CDS YP_002437132.1 218887811 7174664 3448377..3449063 1 NC_011769.1 PFAM: Resolvase domain; KEGG: met:M446_1223 resolvase domain; resolvase 3449063 7174664 DvMF_2725 Desulfovibrio vulgaris str. 'Miyazaki F' resolvase YP_002437132.1 3448377 D 883 CDS YP_002437133.1 218887812 7174665 complement(3449917..3450681) 1 NC_011769.1 SMART: ParB domain protein nuclease; KEGG: azc:AZC_1530 hypothetical protein; ParB domain-containing protein nuclease 3450681 7174665 DvMF_2726 Desulfovibrio vulgaris str. 'Miyazaki F' ParB domain-containing protein nuclease YP_002437133.1 3449917 R 883 CDS YP_002437134.1 218887813 7174666 complement(3450826..3452598) 1 NC_011769.1 PFAM: Resolvase domain; Recombinase; KEGG: dde:Dde_2774 hypothetical protein; recombinase 3452598 7174666 DvMF_2727 Desulfovibrio vulgaris str. 'Miyazaki F' recombinase YP_002437134.1 3450826 R 883 CDS YP_002437135.1 218887814 7174667 3452644..3453618 1 NC_011769.1 PFAM: magnesium chelatase ChlI subunit; KEGG: dde:Dde_2773 competence protein ComM; magnesium chelatase ChlI subunit 3453618 7174667 DvMF_2728 Desulfovibrio vulgaris str. 'Miyazaki F' magnesium chelatase ChlI subunit YP_002437135.1 3452644 D 883 CDS YP_002437136.1 218887815 7174668 3453698..3454342 1 NC_011769.1 KEGG: met:M446_5119 flagellar hook-length control protein; hypothetical protein 3454342 7174668 DvMF_2729 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437136.1 3453698 D 883 CDS YP_002437137.1 218887816 7174669 complement(3454434..3454952) 1 NC_011769.1 KEGG: dde:Dde_3506 hypothetical protein; hypothetical protein 3454952 7174669 DvMF_2730 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437137.1 3454434 R 883 CDS YP_002437138.1 218887817 7174670 complement(3455132..3458155) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_2370 multi-sensor hybrid histidine kinase; PAS/PAC sensor hybrid histidine kinase 3458155 7174670 DvMF_2731 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor hybrid histidine kinase YP_002437138.1 3455132 R 883 CDS YP_002437139.1 218887818 7174671 complement(3458152..3458640) 1 NC_011769.1 PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein; TadE family protein 3458640 7174671 DvMF_2732 Desulfovibrio vulgaris str. 'Miyazaki F' TadE family protein YP_002437139.1 3458152 R 883 CDS YP_002437140.1 218887819 7174672 complement(3458659..3459879) 1 NC_011769.1 PFAM: von Willebrand factor A; KEGG: dde:Dde_2368 von Willebrand factor, type A; von Willebrand factor A 3459879 7174672 DvMF_2733 Desulfovibrio vulgaris str. 'Miyazaki F' von Willebrand factor A YP_002437140.1 3458659 R 883 CDS YP_002437141.1 218887820 7174673 complement(3459944..3460381) 1 NC_011769.1 PFAM: TadE family protein; KEGG: dde:Dde_2367 hypothetical protein; TadE family protein 3460381 7174673 DvMF_2734 Desulfovibrio vulgaris str. 'Miyazaki F' TadE family protein YP_002437141.1 3459944 R 883 CDS YP_002437142.1 218887821 7174674 complement(3460512..3461666) 1 NC_011769.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_2366 hypothetical protein; hypothetical protein 3461666 7174674 DvMF_2735 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437142.1 3460512 R 883 CDS YP_002437143.1 218887822 7174675 complement(3461723..3462703) 1 NC_011769.1 PFAM: type II secretion system protein; KEGG: dde:Dde_2365 hypothetical protein; type II secretion system protein 3462703 7174675 DvMF_2736 Desulfovibrio vulgaris str. 'Miyazaki F' type II secretion system protein YP_002437143.1 3461723 R 883 CDS YP_002437144.1 218887823 7174676 complement(3462717..3463682) 1 NC_011769.1 PFAM: type II secretion system protein; KEGG: dde:Dde_2364 hypothetical protein; type II secretion system protein 3463682 7174676 DvMF_2737 Desulfovibrio vulgaris str. 'Miyazaki F' type II secretion system protein YP_002437144.1 3462717 R 883 CDS YP_002437145.1 218887824 7174677 complement(3463715..3465589) 1 NC_011769.1 PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein; type II secretion system protein E 3465589 7174677 DvMF_2738 Desulfovibrio vulgaris str. 'Miyazaki F' type II secretion system protein E YP_002437145.1 3463715 R 883 CDS YP_002437146.1 218887825 7174678 complement(3465592..3467037) 1 NC_011769.1 KEGG: dde:Dde_2362 response regulator receiver domain-containing protein; response regulator receiver protein 3467037 7174678 DvMF_2739 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002437146.1 3465592 R 883 CDS YP_002437147.1 218887826 7174679 complement(3467050..3467376) 1 NC_011769.1 KEGG: dde:Dde_2361 hypothetical protein; hypothetical protein 3467376 7174679 DvMF_2740 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437147.1 3467050 R 883 CDS YP_002437148.1 218887827 7174680 complement(3467373..3468854) 1 NC_011769.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: dde:Dde_2360 type II/III secretion system protein; type II and III secretion system protein 3468854 7174680 DvMF_2741 Desulfovibrio vulgaris str. 'Miyazaki F' type II and III secretion system protein YP_002437148.1 3467373 R 883 CDS YP_002437149.1 218887828 7174681 complement(3468851..3469675) 1 NC_011769.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: dde:Dde_2359 pilus assembly protein CpaB; Flp pilus assembly protein CpaB 3469675 7174681 DvMF_2742 Desulfovibrio vulgaris str. 'Miyazaki F' Flp pilus assembly protein CpaB YP_002437149.1 3468851 R 883 CDS YP_002437150.1 218887829 7174682 complement(3469688..3470278) 1 NC_011769.1 PFAM: peptidase A24A prepilin type IV; KEGG: dde:Dde_2358 hypothetical protein; peptidase A24A prepilin type IV 3470278 7174682 DvMF_2743 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase A24A prepilin type IV YP_002437150.1 3469688 R 883 CDS YP_002437151.1 218887830 7174683 complement(3470469..3470645) 1 NC_011769.1 PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin; Flp/Fap pilin component 3470645 7174683 DvMF_2744 Desulfovibrio vulgaris str. 'Miyazaki F' Flp/Fap pilin component YP_002437151.1 3470469 R 883 CDS YP_002437152.1 218887831 7174684 complement(3470687..3470863) 1 NC_011769.1 PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin; Flp/Fap pilin component 3470863 7174684 DvMF_2745 Desulfovibrio vulgaris str. 'Miyazaki F' Flp/Fap pilin component YP_002437152.1 3470687 R 883 CDS YP_002437153.1 218887832 7174685 complement(3470917..3471093) 1 NC_011769.1 PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin; Flp/Fap pilin component 3471093 7174685 DvMF_2746 Desulfovibrio vulgaris str. 'Miyazaki F' Flp/Fap pilin component YP_002437153.1 3470917 R 883 CDS YP_002437154.1 218887833 7174686 complement(3471147..3471323) 1 NC_011769.1 PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin; Flp/Fap pilin component 3471323 7174686 DvMF_2747 Desulfovibrio vulgaris str. 'Miyazaki F' Flp/Fap pilin component YP_002437154.1 3471147 R 883 CDS YP_002437155.1 218887834 7174687 complement(3471817..3473445) 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_2355 two component Fis family transcriptional regulator; Fis family transcriptional regulator 3473445 7174687 DvMF_2748 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002437155.1 3471817 R 883 CDS YP_002437156.1 218887835 7174688 3474091..3474687 1 NC_011769.1 KEGG: dde:Dde_2770 hypothetical protein; hypothetical protein 3474687 7174688 DvMF_2749 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437156.1 3474091 D 883 CDS YP_002437157.1 218887836 7174689 3475163..3476290 1 NC_011769.1 PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0258 amino acid ABC transporter periplasmic-binding protein; extracellular ligand-binding receptor 3476290 7174689 DvMF_2750 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular ligand-binding receptor YP_002437157.1 3475163 D 883 CDS YP_002437158.1 218887837 7174690 3476605..3477510 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_0259 branched-chain amino acid ABC transporter permease; inner-membrane translocator 3477510 7174690 DvMF_2751 Desulfovibrio vulgaris str. 'Miyazaki F' inner-membrane translocator YP_002437158.1 3476605 D 883 CDS YP_002437159.1 218887838 7174691 3477507..3478499 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_0260 branched-chain amino acid ABC transporter permease; inner-membrane translocator 3478499 7174691 DvMF_2752 Desulfovibrio vulgaris str. 'Miyazaki F' inner-membrane translocator YP_002437159.1 3477507 D 883 CDS YP_002437160.1 218887839 7174692 3478496..3479263 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0261 ATPase; ABC transporter 3479263 7174692 DvMF_2753 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437160.1 3478496 D 883 CDS YP_002437161.1 218887840 7174693 3479540..3480256 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0262 ATPase; ABC transporter 3480256 7174693 DvMF_2754 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437161.1 3479540 D 883 CDS YP_002437162.1 218887841 7174694 complement(3480604..3481008) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_2769 multi-sensor hybrid histidine kinase; response regulator receiver protein 3481008 7174694 DvMF_2755 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002437162.1 3480604 R 883 CDS YP_002437163.1 218887842 7174695 3481441..3482622 1 NC_011769.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3482622 purT 7174695 purT Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosylglycinamide formyltransferase 2 YP_002437163.1 3481441 D 883 CDS YP_002437164.1 218887843 7174696 3482971..3484131 1 NC_011769.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 3484131 tgt 7174696 tgt Desulfovibrio vulgaris str. 'Miyazaki F' queuine tRNA-ribosyltransferase YP_002437164.1 3482971 D 883 CDS YP_002437165.1 218887844 7174697 complement(3484444..3486540) 1 NC_011769.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: azo:azo0498 GGDEF/PAS/PAC-domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 3486540 7174697 DvMF_2758 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor-containing diguanylate cyclase YP_002437165.1 3484444 R 883 CDS YP_002437166.1 218887845 7174698 3487246..3489516 1 NC_011769.1 PFAM: protein of unknown function DUF255; KEGG: sru:SRU_1548 protein of unknown function, DUF255 family; hypothetical protein 3489516 7174698 DvMF_2759 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437166.1 3487246 D 883 CDS YP_002437167.1 218887846 7174699 complement(3490625..3491650) 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: atu:Atu2400 hypothetical protein; hypothetical protein 3491650 7174699 DvMF_2760 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437167.1 3490625 R 883 CDS YP_002437168.1 218887847 7174700 3491913..3492314 1 NC_011769.1 KEGG: dde:Dde_2843 hypothetical protein; hypothetical protein 3492314 7174700 DvMF_2761 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437168.1 3491913 D 883 CDS YP_002437169.1 218887848 7174701 complement(3492524..3494419) 1 NC_011769.1 TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; MASE1 domain protein; hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_4030 diguanylate cyclase; diguanylate cyclase with hemerythrin-like metal-binding domain 3494419 7174701 DvMF_2762 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase with hemerythrin-like metal-binding domain YP_002437169.1 3492524 R 883 CDS YP_002437170.1 218887849 7174702 complement(3494880..3495704) 1 NC_011769.1 KEGG: mag:amb3043 ABC-type tungstate transporter, permease; tungston ABC transporter permease 3495704 7174702 DvMF_2763 Desulfovibrio vulgaris str. 'Miyazaki F' tungston ABC transporter permease YP_002437170.1 3494880 R 883 CDS YP_002437171.1 218887850 7174703 complement(3495758..3497035) 1 NC_011769.1 KEGG: dde:Dde_2840 hypothetical protein; hypothetical protein 3497035 7174703 DvMF_2764 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437171.1 3495758 R 883 CDS YP_002437172.1 218887851 7174704 3497253..3499904 1 NC_011769.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3499904 valS 7174704 valS Desulfovibrio vulgaris str. 'Miyazaki F' valyl-tRNA synthetase YP_002437172.1 3497253 D 883 CDS YP_002437173.1 218887852 7174705 3500288..3500746 1 NC_011769.1 KEGG: cbf:CLI_1113 hypothetical protein; hypothetical protein 3500746 7174705 DvMF_2766 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437173.1 3500288 D 883 CDS YP_002437174.1 218887853 7174706 3500840..3502351 1 NC_011769.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen III synthase HEM4; KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; uroporphyrin-III C-methyltransferase 3502351 7174706 DvMF_2767 Desulfovibrio vulgaris str. 'Miyazaki F' uroporphyrin-III C-methyltransferase YP_002437174.1 3500840 D 883 CDS YP_002437175.1 218887854 7174707 3502621..3503055 1 NC_011769.1 PFAM: MOSC domain containing protein; KEGG: dde:Dde_2836 MOSC domain-containing protein; MOSC domain-containing protein 3503055 7174707 DvMF_2768 Desulfovibrio vulgaris str. 'Miyazaki F' MOSC domain-containing protein YP_002437175.1 3502621 D 883 CDS YP_002437176.1 218887855 7174708 3503125..3503808 1 NC_011769.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; KEGG: dde:Dde_2835 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 3503808 7174708 DvMF_2769 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosylglycinamide formyltransferase YP_002437176.1 3503125 D 883 CDS YP_002437177.1 218887856 7174710 3504224..3504835 1 NC_011769.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: dde:Dde_2833 hypothetical protein; lysine exporter protein LysE/YggA 3504835 7174710 DvMF_2771 Desulfovibrio vulgaris str. 'Miyazaki F' lysine exporter protein LysE/YggA YP_002437177.1 3504224 D 883 CDS YP_002437178.1 218887857 7174711 complement(3505060..3507498) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_2832 multi-sensor signal transduction histidine kinase; signal transduction histidine kinase, nitrogen specific, NtrB 3507498 7174711 DvMF_2772 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction histidine kinase, nitrogen specific, NtrB YP_002437178.1 3505060 R 883 CDS YP_002437179.1 218887858 7174712 complement(3507495..3508736) 1 NC_011769.1 PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_2831 substrate-binding protein; extracellular ligand-binding receptor 3508736 7174712 DvMF_2773 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular ligand-binding receptor YP_002437179.1 3507495 R 883 CDS YP_002437180.1 218887859 7174713 3509064..3509765 1 NC_011769.1 PFAM: AMMECR1 domain protein; KEGG: dde:Dde_2830 AMMECR1; AMMECR1 domain-containing protein 3509765 7174713 DvMF_2774 Desulfovibrio vulgaris str. 'Miyazaki F' AMMECR1 domain-containing protein YP_002437180.1 3509064 D 883 CDS YP_002437181.1 218887860 7174714 3510180..3511346 1 NC_011769.1 PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_2829 hypothetical protein; major facilitator superfamily protein 3511346 7174714 DvMF_2775 Desulfovibrio vulgaris str. 'Miyazaki F' major facilitator superfamily protein YP_002437181.1 3510180 D 883 CDS YP_002437182.1 218887861 7174715 3511405..3511956 1 NC_011769.1 KEGG: dde:Dde_2828 hypothetical protein; hypothetical protein 3511956 7174715 DvMF_2776 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437182.1 3511405 D 883 CDS YP_002437183.1 218887862 7174716 3511964..3512887 1 NC_011769.1 KEGG: dde:Dde_2827 hypothetical protein; hypothetical protein 3512887 7174716 DvMF_2777 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437183.1 3511964 D 883 CDS YP_002437184.1 218887863 7174717 3512891..3515362 1 NC_011769.1 KEGG: dde:Dde_2826 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 3515362 7174717 DvMF_2778 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor signal transduction histidine kinase YP_002437184.1 3512891 D 883 CDS YP_002437185.1 218887864 7174718 3515359..3517572 1 NC_011769.1 KEGG: dde:Dde_2825 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATPase AAA; Fis family transcriptional regulator 3517572 7174718 DvMF_2779 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002437185.1 3515359 D 883 CDS YP_002437186.1 218887865 7174719 3518077..3518898 1 NC_011769.1 KEGG: dde:Dde_0234 ABC transporter periplasmic substrate-binding protein; ABC transporter periplasmic protein 3518898 7174719 DvMF_2780 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter periplasmic protein YP_002437186.1 3518077 D 883 CDS YP_002437187.1 218887866 7174720 3519107..3519802 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0233 ABC transporter permease; ABC transporter permease 3519802 7174720 DvMF_2781 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter permease YP_002437187.1 3519107 D 883 CDS YP_002437188.1 218887867 7174721 3519799..3520653 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0232 ATPase; ABC transporter 3520653 7174721 DvMF_2782 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437188.1 3519799 D 883 CDS YP_002437189.1 218887868 7174722 complement(3521097..3523052) 1 NC_011769.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2823 acetyl-coenzyme A synthetase; acetate/CoA ligase 3523052 7174722 DvMF_2783 Desulfovibrio vulgaris str. 'Miyazaki F' acetate/CoA ligase YP_002437189.1 3521097 R 883 CDS YP_002437190.1 218887869 7174723 complement(3523231..3524307) 1 NC_011769.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: dde:Dde_2822 response regulator receiver domain-containing protein; LytTR family transcriptional regulator 3524307 7174723 DvMF_2784 Desulfovibrio vulgaris str. 'Miyazaki F' LytTR family transcriptional regulator YP_002437190.1 3523231 R 883 CDS YP_002437191.1 218887870 7174724 complement(3524844..3526868) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3526868 7174724 DvMF_2785 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_002437191.1 3524844 R 883 CDS YP_002437192.1 218887871 7174725 complement(3527193..3528983) 1 NC_011769.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2765 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 3528983 7174725 DvMF_2786 Desulfovibrio vulgaris str. 'Miyazaki F' polar amino acid ABC transporter inner membrane protein YP_002437192.1 3527193 R 883 CDS YP_002437193.1 218887872 7174726 complement(3529175..3530002) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_2764 extracellular solute-binding protein; family 3 extracellular solute-binding protein 3530002 7174726 DvMF_2787 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002437193.1 3529175 R 883 CDS YP_002437194.1 218887873 7174727 complement(3530154..3530885) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2763 ATPase; ABC transporter 3530885 7174727 DvMF_2788 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437194.1 3530154 R 883 CDS YP_002437195.1 218887874 7174728 complement(3531536..3532951) 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_2762 histidine kinase; histidine kinase 3532951 7174728 DvMF_2789 Desulfovibrio vulgaris str. 'Miyazaki F' histidine kinase YP_002437195.1 3531536 R 883 CDS YP_002437196.1 218887875 7174729 3533449..3534366 1 NC_011769.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1667 hypothetical protein; hypothetical protein 3534366 7174729 DvMF_2790 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437196.1 3533449 D 883 CDS YP_002437197.1 218887876 7174730 3534623..3534955 1 NC_011769.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2760 hypothetical protein; type IV pilus assembly PilZ 3534955 7174730 DvMF_2791 Desulfovibrio vulgaris str. 'Miyazaki F' type IV pilus assembly PilZ YP_002437197.1 3534623 D 883 CDS YP_002437198.1 218887877 7174731 complement(3535162..3536106) 1 NC_011769.1 PFAM: YceI family protein; SMART: Rhodanese domain protein; KEGG: dps:DP1288 hypothetical protein; hypothetical protein 3536106 7174731 DvMF_2792 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437198.1 3535162 R 883 CDS YP_002437199.1 218887878 7174732 complement(3536260..3537198) 1 NC_011769.1 PFAM: pirin; KEGG: dps:DP1287 pirin; pirin 3537198 7174732 DvMF_2793 Desulfovibrio vulgaris str. 'Miyazaki F' pirin YP_002437199.1 3536260 R 883 CDS YP_002437200.1 218887879 7174733 complement(3537554..3537877) 1 NC_011769.1 KEGG: dde:Dde_2759 hypothetical protein; hypothetical protein 3537877 7174733 DvMF_2794 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437200.1 3537554 R 883 CDS YP_002437201.1 218887880 7174734 complement(3537983..3539182) 1 NC_011769.1 PFAM: peptidase M29 aminopeptidase II; KEGG: dde:Dde_2758 M29 family peptidase; peptidase M29 aminopeptidase II 3539182 7174734 DvMF_2795 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M29 aminopeptidase II YP_002437201.1 3537983 R 883 CDS YP_002437202.1 218887881 7174735 complement(3539711..3541453) 1 NC_011769.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_2755 hypothetical protein; hypothetical protein 3541453 7174735 DvMF_2796 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437202.1 3539711 R 883 CDS YP_002437203.1 218887882 7174736 complement(3541454..3542044) 1 NC_011769.1 KEGG: lip:LI0115 hypothetical protein; hypothetical protein 3542044 7174736 DvMF_2797 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437203.1 3541454 R 883 CDS YP_002437204.1 218887883 7174737 complement(3542109..3542579) 1 NC_011769.1 PFAM: transcription activator effector binding; KEGG: dde:Dde_2753 hypothetical protein; transcription activator effector binding 3542579 7174737 DvMF_2798 Desulfovibrio vulgaris str. 'Miyazaki F' transcription activator effector binding YP_002437204.1 3542109 R 883 CDS YP_002437205.1 218887884 7174738 3542895..3543170 1 NC_011769.1 PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_2752 histone-like DNA-binding protein; histone family protein DNA-binding protein 3543170 7174738 DvMF_2799 Desulfovibrio vulgaris str. 'Miyazaki F' histone family protein DNA-binding protein YP_002437205.1 3542895 D 883 CDS YP_002437206.1 218887885 7174739 complement(3543326..3543733) 1 NC_011769.1 KEGG: lpc:LPC_0907 mitomycin resistance protein McrB; hypothetical protein 3543733 7174739 DvMF_2800 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437206.1 3543326 R 883 CDS YP_002437207.1 218887886 7174740 complement(3543730..3545088) 1 NC_011769.1 PFAM: MOFRL domain protein; KEGG: dde:Dde_2751 glycerate 2-kinase; hydroxypyruvate reductase 3545088 7174740 DvMF_2801 Desulfovibrio vulgaris str. 'Miyazaki F' hydroxypyruvate reductase YP_002437207.1 3543730 R 883 CDS YP_002437208.1 218887887 7174741 3545474..3546028 1 NC_011769.1 PFAM: transport-associated; KEGG: dde:Dde_2000 transporter; transport-associated 3546028 7174741 DvMF_2802 Desulfovibrio vulgaris str. 'Miyazaki F' transport-associated YP_002437208.1 3545474 D 883 CDS YP_002437209.1 218887888 7174742 3546164..3546322 1 NC_011769.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_2749 rubredoxin; rubredoxin-type Fe(Cys)4 protein 3546322 7174742 DvMF_2803 Desulfovibrio vulgaris str. 'Miyazaki F' rubredoxin-type Fe(Cys)4 protein YP_002437209.1 3546164 D 883 CDS YP_002437210.1 218887889 7174743 complement(3546444..3547856) 1 NC_011769.1 TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: azc:AZC_3677 chromate transporter; chromate transporter chromate ion transporter (CHR) family 3547856 7174743 DvMF_2804 Desulfovibrio vulgaris str. 'Miyazaki F' chromate transporter chromate ion transporter (CHR) family YP_002437210.1 3546444 R 883 CDS YP_002437211.1 218887890 7174744 complement(3547989..3549080) 1 NC_011769.1 KEGG: bid:Bind_2524 ChrB protein; ChrB protein 3549080 7174744 DvMF_2805 Desulfovibrio vulgaris str. 'Miyazaki F' ChrB protein YP_002437211.1 3547989 R 883 CDS YP_002437212.1 218887891 7174745 3549259..3549816 1 NC_011769.1 KEGG: mta:Moth_1023 hypothetical protein; hypothetical protein 3549816 7174745 DvMF_2806 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437212.1 3549259 D 883 CDS YP_002437213.1 218887892 7174746 3549856..3551100 1 NC_011769.1 PFAM: major facilitator superfamily MFS_1; KEGG: sfu:Sfum_0094 major facilitator superfamily MFS_1; major facilitator superfamily protein 3551100 7174746 DvMF_2807 Desulfovibrio vulgaris str. 'Miyazaki F' major facilitator superfamily protein YP_002437213.1 3549856 D 883 CDS YP_002437214.1 218887893 7174747 3551105..3551647 1 NC_011769.1 KEGG: mka:MK0494 HD superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 3551647 7174747 DvMF_2808 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002437214.1 3551105 D 883 CDS YP_002437215.1 218887894 7174748 complement(3551835..3552938) 1 NC_011769.1 PFAM: aminotransferase class V; KEGG: dde:Dde_2744 aminotransferase, class V; class V aminotransferase 3552938 7174748 DvMF_2809 Desulfovibrio vulgaris str. 'Miyazaki F' class V aminotransferase YP_002437215.1 3551835 R 883 CDS YP_002437216.1 218887895 7174749 complement(3553315..3554241) 1 NC_011769.1 KEGG: dde:Dde_2743 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 3554241 7174749 DvMF_2810 Desulfovibrio vulgaris str. 'Miyazaki F' glutamate racemase YP_002437216.1 3553315 R 883 CDS YP_002437217.1 218887896 7174750 complement(3554232..3555125) 1 NC_011769.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 3555125 7174750 DvMF_2811 Desulfovibrio vulgaris str. 'Miyazaki F' pyridoxamine kinase YP_002437217.1 3554232 R 883 CDS YP_002437218.1 218887897 7174751 complement(3555390..3556343) 1 NC_011769.1 PFAM: protein of unknown function DUF81; KEGG: dol:Dole_2891 hypothetical protein; hypothetical protein 3556343 7174751 DvMF_2812 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437218.1 3555390 R 883 CDS YP_002437219.1 218887898 7174752 3556769..3557857 1 NC_011769.1 PFAM: integrase family protein; TOBE domain protein; KEGG: dde:Dde_3517 molybdenum-pterin binding domain-containing protein; TOBE domain-containing protein 3557857 7174752 DvMF_2813 Desulfovibrio vulgaris str. 'Miyazaki F' TOBE domain-containing protein YP_002437219.1 3556769 D 883 CDS YP_002437220.1 218887899 7174753 3558242..3559546 1 NC_011769.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3559546 hisD 7174753 hisD Desulfovibrio vulgaris str. 'Miyazaki F' histidinol dehydrogenase YP_002437220.1 3558242 D 883 CDS YP_002437221.1 218887900 7174754 3559731..3560627 1 NC_011769.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 3560627 7174754 DvMF_2815 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosylaminoimidazole-succinocarboxamide synthase YP_002437221.1 3559731 D 883 CDS YP_002437222.1 218887901 7174755 3560767..3561531 1 NC_011769.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_1006 enoyl-[acyl-carrier-protein] reductase [NADH]; short-chain dehydrogenase/reductase SDR 3561531 7174755 DvMF_2816 Desulfovibrio vulgaris str. 'Miyazaki F' short-chain dehydrogenase/reductase SDR YP_002437222.1 3560767 D 883 CDS YP_002437223.1 218887902 7174758 complement(3563002..3563328) 1 NC_011769.1 KEGG: dde:Dde_1000 hypothetical protein; hypothetical protein 3563328 7174758 DvMF_2817 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437223.1 3563002 R 883 CDS YP_002437224.1 218887903 7174759 complement(3563337..3563981) 1 NC_011769.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: dde:Dde_0998 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 3563981 7174759 DvMF_2818 Desulfovibrio vulgaris str. 'Miyazaki F' methylated-DNA--protein-cysteine methyltransferase YP_002437224.1 3563337 R 883 CDS YP_002437225.1 218887904 7174760 complement(3564308..3565426) 1 NC_011769.1 KEGG: dde:Dde_0997 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 3565426 7174760 DvMF_2819 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002437225.1 3564308 R 883 CDS YP_002437226.1 218887905 7174761 3565508..3566548 1 NC_011769.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3566548 7174761 DvMF_2820 Desulfovibrio vulgaris str. 'Miyazaki F' rod shape-determining protein MreB YP_002437226.1 3565508 D 883 CDS YP_002437227.1 218887906 7174762 3566634..3567593 1 NC_011769.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3567593 7174762 DvMF_2821 Desulfovibrio vulgaris str. 'Miyazaki F' rod shape-determining protein MreC YP_002437227.1 3566634 D 883 CDS YP_002437228.1 218887907 7174763 3567759..3568229 1 NC_011769.1 KEGG: dde:Dde_0994 hypothetical protein; hypothetical protein 3568229 7174763 DvMF_2822 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437228.1 3567759 D 883 CDS YP_002437229.1 218887908 7174764 3568213..3570480 1 NC_011769.1 KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 3570480 7174764 DvMF_2823 Desulfovibrio vulgaris str. 'Miyazaki F' penicillin-binding protein 2 YP_002437229.1 3568213 D 883 CDS YP_002437230.1 218887909 7174765 3570477..3571592 1 NC_011769.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dde:Dde_0992 rod shape-determining protein RodA; rod shape-determining protein RodA 3571592 7174765 DvMF_2824 Desulfovibrio vulgaris str. 'Miyazaki F' rod shape-determining protein RodA YP_002437230.1 3570477 D 883 CDS YP_002437231.1 218887910 7174766 3571652..3571993 1 NC_011769.1 PFAM: protein of unknown function DUF583; KEGG: dde:Dde_0991 hypothetical protein; hypothetical protein 3571993 7174766 DvMF_2825 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437231.1 3571652 D 883 CDS YP_002437232.1 218887911 7174767 3572180..3572596 1 NC_011769.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0990 ATP synthase F0 B' subunit; H+transporting two-sector ATPase subunit B/B' 3572596 7174767 DvMF_2826 Desulfovibrio vulgaris str. 'Miyazaki F' H+transporting two-sector ATPase subunit B/B' YP_002437232.1 3572180 D 883 CDS YP_002437233.1 218887912 7174768 3572636..3573205 1 NC_011769.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0989 ATP synthase F0 subunit beta; H+transporting two-sector ATPase subunit B/B' 3573205 7174768 DvMF_2827 Desulfovibrio vulgaris str. 'Miyazaki F' H+transporting two-sector ATPase subunit B/B' YP_002437233.1 3572636 D 883 CDS YP_002437234.1 218887913 7174769 3573202..3573753 1 NC_011769.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 3573753 7174769 DvMF_2828 Desulfovibrio vulgaris str. 'Miyazaki F' F0F1 ATP synthase subunit delta YP_002437234.1 3573202 D 883 CDS YP_002437235.1 218887914 7174770 3573758..3575266 1 NC_011769.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 3575266 7174770 DvMF_2829 Desulfovibrio vulgaris str. 'Miyazaki F' F0F1 ATP synthase subunit alpha YP_002437235.1 3573758 D 883 CDS YP_002437236.1 218887915 7174771 3575281..3576162 1 NC_011769.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 3576162 7174771 DvMF_2830 Desulfovibrio vulgaris str. 'Miyazaki F' F0F1 ATP synthase subunit gamma YP_002437236.1 3575281 D 883 CDS YP_002437237.1 218887916 7174772 3576180..3577595 1 NC_011769.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 3577595 7174772 DvMF_2831 Desulfovibrio vulgaris str. 'Miyazaki F' F0F1 ATP synthase subunit beta YP_002437237.1 3576180 D 883 CDS YP_002437238.1 218887917 7174773 3577606..3578010 1 NC_011769.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit epsilon is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon 3578010 atpC 7174773 atpC Desulfovibrio vulgaris str. 'Miyazaki F' F0F1 ATP synthase subunit epsilon YP_002437238.1 3577606 D 883 CDS YP_002437239.1 218887918 7174774 complement(3578544..3578780) 1 NC_011769.1 KEGG: dde:Dde_1145 hypothetical protein; hypothetical protein 3578780 7174774 DvMF_2833 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437239.1 3578544 R 883 CDS YP_002437240.1 218887919 7174775 3579336..3579683 1 NC_011769.1 KEGG: dde:Dde_1143 hypothetical protein; hypothetical protein 3579683 7174775 DvMF_2834 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437240.1 3579336 D 883 CDS YP_002437241.1 218887920 7174776 3580091..3582010 1 NC_011769.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 3582010 dnaK 7174776 dnaK Desulfovibrio vulgaris str. 'Miyazaki F' molecular chaperone DnaK YP_002437241.1 3580091 D 883 CDS YP_002437242.1 218887921 7174777 3582052..3584379 1 NC_011769.1 KEGG: dde:Dde_1022 hypothetical protein; hypothetical protein 3584379 7174777 DvMF_2836 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437242.1 3582052 D 883 CDS YP_002437243.1 218887922 7174778 3584404..3584691 1 NC_011769.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: dde:Dde_1021 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; glutamyl-tRNA(Gln) amidotransferase subunit C 3584691 7174778 DvMF_2837 Desulfovibrio vulgaris str. 'Miyazaki F' glutamyl-tRNA(Gln) amidotransferase subunit C YP_002437243.1 3584404 D 883 CDS YP_002437244.1 218887923 7174779 3585069..3586574 1 NC_011769.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 3586574 gatA 7174779 gatA Desulfovibrio vulgaris str. 'Miyazaki F' aspartyl/glutamyl-tRNA amidotransferase subunit A YP_002437244.1 3585069 D 883 CDS YP_002437245.1 218887924 7174780 3586620..3587675 1 NC_011769.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dde:Dde_1019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 3587675 7174780 DvMF_2839 Desulfovibrio vulgaris str. 'Miyazaki F' tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_002437245.1 3586620 D 883 CDS YP_002437246.1 218887925 7174781 complement(3587862..3589073) 1 NC_011769.1 PFAM: EAL domain protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2343 diguanylate phosphodiesterase; diguanylate phosphodiesterase 3589073 7174781 DvMF_2840 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate phosphodiesterase YP_002437246.1 3587862 R 883 CDS YP_002437247.1 218887926 7174782 complement(3589572..3590009) 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_1018 response regulator receiver domain-containing protein; response regulator receiver protein 3590009 7174782 DvMF_2841 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002437247.1 3589572 R 883 CDS YP_002437248.1 218887927 7174783 complement(3590229..3590525) 1 NC_011769.1 KEGG: dde:Dde_1017 hypothetical protein; hypothetical protein 3590525 7174783 DvMF_2842 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437248.1 3590229 R 883 CDS YP_002437249.1 218887928 7174784 complement(3590705..3592348) 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_1016 two component Fis family transcriptional regulator; Fis family transcriptional regulator 3592348 7174784 DvMF_2843 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002437249.1 3590705 R 883 CDS YP_002437250.1 218887929 7174785 complement(3592368..3594029) 1 NC_011769.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sfu:Sfum_3740 PAS/PAC sensor protein; histidine kinase 3594029 7174785 DvMF_2844 Desulfovibrio vulgaris str. 'Miyazaki F' histidine kinase YP_002437250.1 3592368 R 883 CDS YP_002437251.1 218887930 7174786 complement(3594321..3596609) 1 NC_011769.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 3596609 uvrC 7174786 uvrC Desulfovibrio vulgaris str. 'Miyazaki F' excinuclease ABC subunit C YP_002437251.1 3594321 R 883 CDS YP_002437252.1 218887931 7174787 3596931..3598325 1 NC_011769.1 KEGG: dde:Dde_1010 hypothetical protein; hypothetical protein 3598325 7174787 DvMF_2846 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437252.1 3596931 D 883 CDS YP_002437253.1 218887932 7174789 complement(3600350..3601021) 1 NC_011769.1 PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; KEGG: dde:Dde_0765 CBS; hypothetical protein 3601021 7174789 DvMF_2848 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437253.1 3600350 R 883 CDS YP_002437254.1 218887933 7174790 3601299..3602165 1 NC_011769.1 PFAM: protein of unknown function DUF161; KEGG: dde:Dde_2520 hypothetical protein; hypothetical protein 3602165 7174790 DvMF_2849 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437254.1 3601299 D 883 CDS YP_002437255.1 218887934 7174791 complement(3602422..3603507) 1 NC_011769.1 KEGG: dde:Dde_0769 hypothetical protein; hypothetical protein 3603507 7174791 DvMF_2850 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437255.1 3602422 R 883 CDS YP_002437256.1 218887935 7174792 complement(3603938..3606361) 1 NC_011769.1 KEGG: dde:Dde_0788 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; diguanylate cyclase and serine/threonine protein kinase with TPR repeats 3606361 7174792 DvMF_2851 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase and serine/threonine protein kinase with TPR repeats YP_002437256.1 3603938 R 883 CDS YP_002437257.1 218887936 7174793 3606783..3607319 1 NC_011769.1 PFAM: nitroreductase; KEGG: dde:Dde_0787 nitroreductase family protein; nitroreductase 3607319 7174793 DvMF_2852 Desulfovibrio vulgaris str. 'Miyazaki F' nitroreductase YP_002437257.1 3606783 D 883 CDS YP_002437258.1 218887937 7174794 3607316..3607948 1 NC_011769.1 PFAM: beta-lactamase; KEGG: dde:Dde_0786 metallo-beta-lactamase family protein; beta-lactamase 3607948 7174794 DvMF_2853 Desulfovibrio vulgaris str. 'Miyazaki F' beta-lactamase YP_002437258.1 3607316 D 883 CDS YP_002437259.1 218887938 7174795 3608038..3608229 1 NC_011769.1 hypothetical protein 3608229 7174795 DvMF_2854 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437259.1 3608038 D 883 CDS YP_002437260.1 218887939 7174796 3608219..3608392 1 NC_011769.1 hypothetical protein 3608392 7174796 DvMF_2855 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437260.1 3608219 D 883 CDS YP_002437261.1 218887940 7174797 3608395..3609027 1 NC_011769.1 PFAM: NADPH-dependent FMN reductase; KEGG: dde:Dde_0785 iron-sulfur flavoprotein; NADPH-dependent FMN reductase 3609027 7174797 DvMF_2856 Desulfovibrio vulgaris str. 'Miyazaki F' NADPH-dependent FMN reductase YP_002437261.1 3608395 D 883 CDS YP_002437262.1 218887941 7174798 3609031..3609855 1 NC_011769.1 PFAM: phosphoribosyltransferase; KEGG: lip:LI1111 predicted amidophosphoribosyltransferases; phosphoribosyltransferase 3609855 7174798 DvMF_2857 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoribosyltransferase YP_002437262.1 3609031 D 883 CDS YP_002437263.1 218887942 7174799 3609961..3610698 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpt:Bpet3662 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3610698 7174799 DvMF_2858 Desulfovibrio vulgaris str. 'Miyazaki F' short-chain dehydrogenase/reductase SDR YP_002437263.1 3609961 D 883 CDS YP_002437264.1 218887943 7174800 3610877..3611665 1 NC_011769.1 KEGG: dde:Dde_1189 hypothetical protein; hypothetical protein 3611665 7174800 DvMF_2859 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437264.1 3610877 D 883 CDS YP_002437265.1 218887944 7174801 3611931..3612329 1 NC_011769.1 PFAM: response regulator receiver; KEGG: dde:Dde_0774 response regulator receiver domain-containing protein; response regulator receiver protein 3612329 7174801 DvMF_2860 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver protein YP_002437265.1 3611931 D 883 CDS YP_002437266.1 218887945 7174802 3612557..3613483 1 NC_011769.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: dde:Dde_0773 hypothetical protein; import inner membrane translocase subunit Tim44 3613483 7174802 DvMF_2861 Desulfovibrio vulgaris str. 'Miyazaki F' import inner membrane translocase subunit Tim44 YP_002437266.1 3612557 D 883 CDS YP_002437267.1 218887946 7174803 complement(3613666..3614157) 1 NC_011769.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_1027 bacterioferritin comigratory protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 3614157 7174803 DvMF_2862 Desulfovibrio vulgaris str. 'Miyazaki F' alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_002437267.1 3613666 R 883 CDS YP_002437268.1 218887947 7174804 complement(3614393..3616528) 1 NC_011769.1 PFAM: AsmA family protein; KEGG: dde:Dde_1028 hypothetical protein; AsmA family protein 3616528 7174804 DvMF_2863 Desulfovibrio vulgaris str. 'Miyazaki F' AsmA family protein YP_002437268.1 3614393 R 883 CDS YP_002437269.1 218887948 7174805 3616839..3618494 1 NC_011769.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 3618494 7174805 DvMF_2864 Desulfovibrio vulgaris str. 'Miyazaki F' cobyric acid synthase YP_002437269.1 3616839 D 883 CDS YP_002437270.1 218887949 7174806 3618559..3619758 1 NC_011769.1 KEGG: ago:AGOS_ADR019C ADR019Cp; hypothetical protein 3619758 7174806 DvMF_2865 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437270.1 3618559 D 883 CDS YP_002437271.1 218887950 7174807 complement(3620062..3620499) 1 NC_011769.1 hypothetical protein 3620499 7174807 DvMF_2866 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437271.1 3620062 R 883 CDS YP_002437272.1 218887951 7174808 3620910..3621488 1 NC_011769.1 KEGG: tcx:Tcr_0674 protein of unknown function DUF847; hypothetical protein 3621488 7174808 DvMF_2867 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437272.1 3620910 D 883 CDS YP_002437273.1 218887952 7174809 3621698..3621940 1 NC_011769.1 PFAM: transglycosylase; KEGG: gme:Gmet_1208 transglycosylase; transglycosylase 3621940 7174809 DvMF_2868 Desulfovibrio vulgaris str. 'Miyazaki F' transglycosylase YP_002437273.1 3621698 D 883 CDS YP_002437274.1 218887953 7174810 complement(3622041..3622559) 1 NC_011769.1 hypothetical protein 3622559 7174810 DvMF_2869 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437274.1 3622041 R 883 CDS YP_002437275.1 218887954 7174811 complement(3622885..3623631) 1 NC_011769.1 PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein; OmpA/MotB domain-containing protein 3623631 7174811 DvMF_2870 Desulfovibrio vulgaris str. 'Miyazaki F' OmpA/MotB domain-containing protein YP_002437275.1 3622885 R 883 CDS YP_002437276.1 218887955 7174812 complement(3623621..3624376) 1 NC_011769.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1538 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel 3624376 7174812 DvMF_2871 Desulfovibrio vulgaris str. 'Miyazaki F' MotA/TolQ/ExbB proton channel YP_002437276.1 3623621 R 883 CDS YP_002437277.1 218887956 7174814 complement(3625240..3626478) 1 NC_011769.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 3626478 argJ 7174814 argJ Desulfovibrio vulgaris str. 'Miyazaki F' bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_002437277.1 3625240 R 883 CDS YP_002437278.1 218887957 7174815 complement(3626815..3629349) 1 NC_011769.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 3629349 7174815 DvMF_2873 Desulfovibrio vulgaris str. 'Miyazaki F' preprotein translocase subunit SecA YP_002437278.1 3626815 R 883 CDS YP_002437279.1 218887958 7174816 complement(3629878..3631284) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase iron-sulfur subunit; 4Fe-4S ferredoxin 3631284 7174816 DvMF_2874 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002437279.1 3629878 R 883 CDS YP_002437280.1 218887959 7174817 complement(3631620..3633044) 1 NC_011769.1 PFAM: FAD linked oxidase; KEGG: dde:Dde_1087 glycolate oxidase subunit GlcD; FAD linked oxidase 3633044 7174817 DvMF_2875 Desulfovibrio vulgaris str. 'Miyazaki F' FAD linked oxidase YP_002437280.1 3631620 R 883 CDS YP_002437281.1 218887960 7174818 complement(3633205..3633666) 1 NC_011769.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 3633666 smpB 7174818 smpB Desulfovibrio vulgaris str. 'Miyazaki F' SsrA-binding protein YP_002437281.1 3633205 R 883 CDS YP_002437282.1 218887961 7174819 complement(3634888..3636663) 1 NC_011769.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: dde:Dde_1089 phosphoenolpyruvate--protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 3636663 7174819 DvMF_2877 Desulfovibrio vulgaris str. 'Miyazaki F' phosphoenolpyruvate-protein phosphotransferase YP_002437282.1 3634888 R 883 CDS YP_002437283.1 218887962 7174820 complement(3636667..3636963) 1 NC_011769.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: dde:Dde_1090 HPrNtr; phosphotransferase system, phosphocarrier protein HPr 3636963 7174820 DvMF_2878 Desulfovibrio vulgaris str. 'Miyazaki F' phosphotransferase system, phosphocarrier protein HPr YP_002437283.1 3636667 R 883 CDS YP_002437284.1 218887963 7174821 complement(3637018..3637797) 1 NC_011769.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dde:Dde_1091 PTS system, IID component; PTS system mannose/fructose/sorbose family transporter subunit IID 3637797 7174821 DvMF_2879 Desulfovibrio vulgaris str. 'Miyazaki F' PTS system mannose/fructose/sorbose family transporter subunit IID YP_002437284.1 3637018 R 883 CDS YP_002437285.1 218887964 7174822 complement(3637895..3638734) 1 NC_011769.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_1092 hypothetical protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 3638734 7174822 DvMF_2880 Desulfovibrio vulgaris str. 'Miyazaki F' uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_002437285.1 3637895 R 883 CDS YP_002437286.1 218887965 7174823 complement(3638676..3639116) 1 NC_011769.1 PFAM: protein of unknown function UPF0102; KEGG: lip:LI0223 predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 3639116 7174823 DvMF_2881 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437286.1 3638676 R 883 CDS YP_002437287.1 218887966 7174824 complement(3639113..3639991) 1 NC_011769.1 PFAM: ribonuclease HII/HIII; KEGG: dde:Dde_1094 RNase HII; ribonuclease H 3639991 7174824 DvMF_2882 Desulfovibrio vulgaris str. 'Miyazaki F' ribonuclease H YP_002437287.1 3639113 R 883 CDS YP_002437288.1 218887967 7174825 complement(3640268..3640615) 1 NC_011769.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3640615 rplS 7174825 rplS Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L19 YP_002437288.1 3640268 R 883 CDS YP_002437289.1 218887968 7174826 complement(3640671..3641966) 1 NC_011769.1 KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 3641966 7174826 DvMF_2884 Desulfovibrio vulgaris str. 'Miyazaki F' tRNA (guanine-N1)-methyltransferase YP_002437289.1 3640671 R 883 CDS YP_002437290.1 218887969 7174827 complement(3641983..3642615) 1 NC_011769.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: dde:Dde_1097 16S rRNA processing protein RimM; 16S rRNA processing protein RimM 3642615 7174827 DvMF_2885 Desulfovibrio vulgaris str. 'Miyazaki F' 16S rRNA processing protein RimM YP_002437290.1 3641983 R 883 CDS YP_002437291.1 218887970 7174828 complement(3642812..3643045) 1 NC_011769.1 KEGG: dde:Dde_1098 hypothetical protein; hypothetical protein 3643045 7174828 DvMF_2886 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437291.1 3642812 R 883 CDS YP_002437292.1 218887971 7174829 complement(3643129..3643368) 1 NC_011769.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 3643368 rpsP 7174829 rpsP Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S16 YP_002437292.1 3643129 R 883 CDS YP_002437293.1 218887972 7174830 complement(3643457..3645013) 1 NC_011769.1 KEGG: dde:Dde_1100 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle protein 3645013 7174830 DvMF_2888 Desulfovibrio vulgaris str. 'Miyazaki F' signal recognition particle protein YP_002437293.1 3643457 R 883 CDS YP_002437294.1 218887973 7174831 complement(3645370..3646554) 1 NC_011769.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 3646554 7174831 DvMF_2889 Desulfovibrio vulgaris str. 'Miyazaki F' aspartate aminotransferase YP_002437294.1 3645370 R 883 CDS YP_002437295.1 218887974 7174832 complement(3646672..3646905) 1 NC_011769.1 KEGG: dde:Dde_1105 hypothetical protein; hypothetical protein 3646905 7174832 DvMF_2890 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437295.1 3646672 R 883 CDS YP_002437296.1 218887975 7174833 complement(3646895..3648772) 1 NC_011769.1 KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like; 5-enolpyruvylshikimate-3-phosphate synthase-like protein 3648772 7174833 DvMF_2891 Desulfovibrio vulgaris str. 'Miyazaki F' 5-enolpyruvylshikimate-3-phosphate synthase-like protein YP_002437296.1 3646895 R 883 CDS YP_002437297.1 218887976 7174834 3649654..3650157 1 NC_011769.1 TIGRFAM: adenylylsulfate reductase subunit beta; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1109 adenylylsulfate reductase subunit beta; adenylylsulfate reductase subunit beta 3650157 7174834 DvMF_2892 Desulfovibrio vulgaris str. 'Miyazaki F' adenylylsulfate reductase subunit beta YP_002437297.1 3649654 D 883 CDS YP_002437298.1 218887977 7174835 3650200..3652197 1 NC_011769.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 3652197 7174835 DvMF_2893 Desulfovibrio vulgaris str. 'Miyazaki F' adenylylsulfate reductase subunit alpha YP_002437298.1 3650200 D 883 CDS YP_002437299.1 218887978 7174836 3652346..3653584 1 NC_011769.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_1111 heterodisulfide reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3653584 7174836 DvMF_2894 Desulfovibrio vulgaris str. 'Miyazaki F' FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002437299.1 3652346 D 883 CDS YP_002437300.1 218887979 7174837 3653591..3655855 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase subunit delta; KEGG: dde:Dde_1112 heterodisulfide reductase, iron-sulfur-binding subunit; methyl-viologen-reducing hydrogenase subunit delta 3655855 7174837 DvMF_2895 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-viologen-reducing hydrogenase subunit delta YP_002437300.1 3653591 D 883 CDS YP_002437301.1 218887980 7174838 3655869..3657023 1 NC_011769.1 KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit; heterodisulfide reductase 3657023 7174838 DvMF_2896 Desulfovibrio vulgaris str. 'Miyazaki F' heterodisulfide reductase YP_002437301.1 3655869 D 883 CDS YP_002437302.1 218887981 7174839 3657108..3657854 1 NC_011769.1 KEGG: dde:Dde_1114 hypothetical protein; hypothetical protein 3657854 7174839 DvMF_2897 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437302.1 3657108 D 883 CDS YP_002437303.1 218887982 7174840 complement(3658581..3660065) 1 NC_011769.1 PFAM: protein of unknown function UPF0027; KEGG: fal:FRAAL4283 hypothetical protein; hypothetical protein 3660065 7174840 DvMF_2898 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437303.1 3658581 R 883 CDS YP_002437304.1 218887983 7174841 complement(3660108..3660560) 1 NC_011769.1 KEGG: bid:Bind_2909 hypothetical protein; hypothetical protein 3660560 7174841 DvMF_2899 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437304.1 3660108 R 883 CDS YP_002437305.1 218887984 7174842 complement(3660726..3661223) 1 NC_011769.1 KEGG: dde:Dde_2578 AsnC family transcriptional regulator; AsnC family transcriptional regulator 3661223 7174842 DvMF_2900 Desulfovibrio vulgaris str. 'Miyazaki F' AsnC family transcriptional regulator YP_002437305.1 3660726 R 883 CDS YP_002437306.1 218887985 7174843 complement(3661234..3662313) 1 NC_011769.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_2577 elongator protein 3/MiaB/NifB; radical SAM protein 3662313 7174843 DvMF_2901 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002437306.1 3661234 R 883 CDS YP_002437307.1 218887986 7174844 complement(3662489..3663490) 1 NC_011769.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3663490 7174844 DvMF_2902 Desulfovibrio vulgaris str. 'Miyazaki F' delta-aminolevulinic acid dehydratase YP_002437307.1 3662489 R 883 CDS YP_002437308.1 218887987 7174845 complement(3663759..3664940) 1 NC_011769.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_2575 elongator protein 3/MiaB/NifB; radical SAM protein 3664940 7174845 DvMF_2903 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002437308.1 3663759 R 883 CDS YP_002437309.1 218887988 7174846 complement(3665137..3670950) 1 NC_011769.1 PFAM: protein of unknown function DUF490; KEGG: lip:LI0689 hypothetical protein; hypothetical protein 3670950 7174846 DvMF_2904 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437309.1 3665137 R 883 CDS YP_002437310.1 218887989 7174847 complement(3670950..3673319) 1 NC_011769.1 PFAM: surface antigen (D15); KEGG: lip:LI0688 outer membrane protein; surface antigen (D15) 3673319 7174847 DvMF_2905 Desulfovibrio vulgaris str. 'Miyazaki F' surface antigen (D15) YP_002437310.1 3670950 R 883 CDS YP_002437311.1 218887990 7174848 complement(3673437..3674207) 1 NC_011769.1 KEGG: lip:LI0341 hypothetical protein; hypothetical protein 3674207 7174848 DvMF_2906 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437311.1 3673437 R 883 CDS YP_002437312.1 218887991 7174849 complement(3674555..3674890) 1 NC_011769.1 KEGG: dde:Dde_1115 hypothetical protein; hypothetical protein 3674890 7174849 DvMF_2907 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437312.1 3674555 R 883 CDS YP_002437313.1 218887992 7174850 complement(3675060..3676760) 1 NC_011769.1 TIGRFAM: MJ0042 family finger-like protein; PFAM: zinc finger/thioredoxin KEGG: dde:Dde_1116 hypothetical protein; hypothetical protein 3676760 7174850 DvMF_2908 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437313.1 3675060 R 883 CDS YP_002437314.1 218887993 7174851 complement(3676925..3678436) 1 NC_011769.1 KEGG: dde:Dde_1117 hypothetical protein; hypothetical protein 3678436 7174851 DvMF_2909 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437314.1 3676925 R 883 CDS YP_002437315.1 218887994 7174852 complement(3678433..3679689) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1118 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 3679689 7174852 DvMF_2910 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002437315.1 3678433 R 883 CDS YP_002437316.1 218887995 7174853 complement(3679750..3680577) 1 NC_011769.1 PFAM: flagellar protein FliS; KEGG: dde:Dde_1119 flagellar protein FliS; flagellar protein FliS 3680577 7174853 DvMF_2911 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar protein FliS YP_002437316.1 3679750 R 883 CDS YP_002437317.1 218887996 7174854 complement(3680696..3682429) 1 NC_011769.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: dde:Dde_1120 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein 3682429 7174854 DvMF_2912 Desulfovibrio vulgaris str. 'Miyazaki F' flagellar hook-associated 2 domain-containing protein YP_002437317.1 3680696 R 883 CDS YP_002437318.1 218887997 7174855 complement(3682730..3683878) 1 NC_011769.1 PFAM: peptidase M22 glycoprotease; KEGG: dde:Dde_1121 glycoprotease family protein; peptidase M22 glycoprotease 3683878 7174855 DvMF_2913 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M22 glycoprotease YP_002437318.1 3682730 R 883 CDS YP_002437319.1 218887998 7174856 complement(3683875..3684939) 1 NC_011769.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: dde:Dde_1122 peptidase RseP; membrane-associated zinc metalloprotease 3684939 7174856 DvMF_2914 Desulfovibrio vulgaris str. 'Miyazaki F' membrane-associated zinc metalloprotease YP_002437319.1 3683875 R 883 CDS YP_002437320.1 218887999 7174857 complement(3684936..3686309) 1 NC_011769.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3686309 7174857 DvMF_2915 Desulfovibrio vulgaris str. 'Miyazaki F' 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_002437320.1 3684936 R 883 CDS YP_002437321.1 218888000 7174858 complement(3686346..3687878) 1 NC_011769.1 PFAM: pyridoxal-dependent decarboxylase; KEGG: dde:Dde_1124 aromatic amino acid decarboxylase; Aromatic-L-amino-acid decarboxylase 3687878 7174858 DvMF_2916 Desulfovibrio vulgaris str. 'Miyazaki F' Aromatic-L-amino-acid decarboxylase YP_002437321.1 3686346 R 883 CDS YP_002437322.1 218888001 7174859 complement(3688147..3688953) 1 NC_011769.1 PFAM: phosphatidate cytidylyltransferase; KEGG: dde:Dde_1125 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3688953 7174859 DvMF_2917 Desulfovibrio vulgaris str. 'Miyazaki F' phosphatidate cytidylyltransferase YP_002437322.1 3688147 R 883 CDS YP_002437323.1 218888002 7174860 complement(3688950..3689702) 1 NC_011769.1 KEGG: dde:Dde_1126 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 3689702 7174860 DvMF_2918 Desulfovibrio vulgaris str. 'Miyazaki F' undecaprenyl diphosphate synthase YP_002437323.1 3688950 R 883 CDS YP_002437324.1 218888003 7174861 complement(3689873..3690433) 1 NC_011769.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 3690433 frr 7174861 frr Desulfovibrio vulgaris str. 'Miyazaki F' ribosome recycling factor YP_002437324.1 3689873 R 883 CDS YP_002437325.1 218888004 7174862 complement(3690439..3691155) 1 NC_011769.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 3691155 pyrH 7174862 pyrH Desulfovibrio vulgaris str. 'Miyazaki F' uridylate kinase YP_002437325.1 3690439 R 883 CDS YP_002437326.1 218888005 7174863 complement(3691274..3692065) 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1130 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 3692065 7174863 DvMF_2921 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002437326.1 3691274 R 883 CDS YP_002437327.1 218888006 7174864 complement(3692137..3693156) 1 NC_011769.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mrd:Mrad2831_1187 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3693156 7174864 DvMF_2922 Desulfovibrio vulgaris str. 'Miyazaki F' NAD-dependent epimerase/dehydratase YP_002437327.1 3692137 R 883 CDS YP_002437328.1 218888007 7174865 complement(3693333..3693935) 1 NC_011769.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; translation elongation factor EFTs/EF1B dimerisation; KEGG: dde:Dde_1132 translation elongation factor Ts (EF-Ts); translation elongation factor Ts 3693935 7174865 DvMF_2923 Desulfovibrio vulgaris str. 'Miyazaki F' translation elongation factor Ts YP_002437328.1 3693333 R 883 CDS YP_002437329.1 218888008 7174866 complement(3693970..3694785) 1 NC_011769.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 3694785 rpsB 7174866 rpsB Desulfovibrio vulgaris str. 'Miyazaki F' 30S ribosomal protein S2 YP_002437329.1 3693970 R 883 CDS YP_002437330.1 218888009 7174867 complement(3695113..3695895) 1 NC_011769.1 PFAM: fumarylacetoacetate hydrolase; KEGG: dde:Dde_1138 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 3695895 7174867 DvMF_2925 Desulfovibrio vulgaris str. 'Miyazaki F' 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_002437330.1 3695113 R 883 CDS YP_002437331.1 218888010 7174868 complement(3696045..3697706) 1 NC_011769.1 PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1137 metallo-beta-lactamase family protein; beta-lactamase 3697706 7174868 DvMF_2926 Desulfovibrio vulgaris str. 'Miyazaki F' beta-lactamase YP_002437331.1 3696045 R 883 CDS YP_002437332.1 218888011 7174869 complement(3698129..3699028) 1 NC_011769.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 3699028 garR 7174869 garR Desulfovibrio vulgaris str. 'Miyazaki F' tartronate semialdehyde reductase YP_002437332.1 3698129 R 883 CDS YP_002437333.1 218888012 7174870 complement(3699108..3700340) 1 NC_011769.1 PFAM: methicillin resistance protein; KEGG: dde:Dde_1247 femAB family protein; methicillin resistance protein 3700340 7174870 DvMF_2928 Desulfovibrio vulgaris str. 'Miyazaki F' methicillin resistance protein YP_002437333.1 3699108 R 883 CDS YP_002437334.1 218888013 7174871 complement(3700524..3701315) 1 NC_011769.1 KEGG: dac:Daci_2118 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: xylose isomerase; hydroxypyruvate isomerase 3701315 7174871 DvMF_2929 Desulfovibrio vulgaris str. 'Miyazaki F' hydroxypyruvate isomerase YP_002437334.1 3700524 R 883 CDS YP_002437335.1 218888014 7174872 complement(3701469..3702350) 1 NC_011769.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dra:DR_0815 GntR family transcriptional regulator; GntR family transcriptional regulator 3702350 7174872 DvMF_2930 Desulfovibrio vulgaris str. 'Miyazaki F' GntR family transcriptional regulator YP_002437335.1 3701469 R 883 CDS YP_002437336.1 218888015 7174873 complement(3702681..3704747) 1 NC_011769.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3704747 7174873 DvMF_2931 Desulfovibrio vulgaris str. 'Miyazaki F' elongation factor G YP_002437336.1 3702681 R 883 CDS YP_002437337.1 218888016 7174874 3705472..3705984 1 NC_011769.1 KEGG: dde:Dde_2740 hypothetical protein; hypothetical protein 3705984 7174874 DvMF_2932 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437337.1 3705472 D 883 CDS YP_002437338.1 218888017 7174875 3706156..3706419 1 NC_011769.1 PFAM: glutaredoxin; KEGG: dde:Dde_2739 hypothetical protein; glutaredoxin 3706419 7174875 DvMF_2933 Desulfovibrio vulgaris str. 'Miyazaki F' glutaredoxin YP_002437338.1 3706156 D 883 CDS YP_002437339.1 218888018 7174876 3706416..3706760 1 NC_011769.1 KEGG: dde:Dde_2738 hypothetical protein; hypothetical protein 3706760 7174876 DvMF_2934 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437339.1 3706416 D 883 CDS YP_002437340.1 218888019 7174877 complement(3706874..3707800) 1 NC_011769.1 PFAM: PfkB domain protein; KEGG: dde:Dde_1489 carbohydrate kinase; PfkB domain-containing protein 3707800 7174877 DvMF_2935 Desulfovibrio vulgaris str. 'Miyazaki F' PfkB domain-containing protein YP_002437340.1 3706874 R 883 CDS YP_002437341.1 218888020 7174878 complement(3707802..3708122) 1 NC_011769.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: dde:Dde_1490 periplasmic divalent cation tolerance protein CutA; CutA1 divalent ion tolerance protein 3708122 7174878 DvMF_2936 Desulfovibrio vulgaris str. 'Miyazaki F' CutA1 divalent ion tolerance protein YP_002437341.1 3707802 R 883 CDS YP_002437342.1 218888021 7174879 3708736..3709581 1 NC_011769.1 KEGG: dde:Dde_1491 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; endonuclease III/Nth; endonuclease III 3709581 7174879 DvMF_2937 Desulfovibrio vulgaris str. 'Miyazaki F' endonuclease III YP_002437342.1 3708736 D 883 CDS YP_002437343.1 218888022 7174880 3709578..3710411 1 NC_011769.1 KEGG: dde:Dde_1492 hypothetical protein; hypothetical protein 3710411 7174880 DvMF_2938 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437343.1 3709578 D 883 CDS YP_002437344.1 218888023 7174881 3710745..3711716 1 NC_011769.1 PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_1493 response regulator receiver (CheY-like) modulated CheW protein; chemotaxis protein CheW 3711716 7174881 DvMF_2939 Desulfovibrio vulgaris str. 'Miyazaki F' chemotaxis protein CheW YP_002437344.1 3710745 D 883 CDS YP_002437345.1 218888024 7174882 3711993..3712325 1 NC_011769.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein; type IV pilus assembly PilZ 3712325 7174882 DvMF_2940 Desulfovibrio vulgaris str. 'Miyazaki F' type IV pilus assembly PilZ YP_002437345.1 3711993 D 883 CDS YP_002437346.1 218888025 7174883 complement(3712497..3713666) 1 NC_011769.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3713666 7174883 DvMF_2941 Desulfovibrio vulgaris str. 'Miyazaki F' S-adenosylmethionine synthetase YP_002437346.1 3712497 R 883 CDS YP_002437347.1 218888026 7174884 complement(3713801..3714652) 1 NC_011769.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3714652 panC 7174884 panC Desulfovibrio vulgaris str. 'Miyazaki F' pantoate--beta-alanine ligase YP_002437347.1 3713801 R 883 CDS YP_002437348.1 218888027 7174885 3714966..3715706 1 NC_011769.1 KEGG: dde:Dde_1499 hypothetical protein; hypothetical protein 3715706 7174885 DvMF_2943 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437348.1 3714966 D 883 CDS YP_002437349.1 218888028 7174886 complement(3715860..3716942) 1 NC_011769.1 KEGG: rfr:Rfer_2442 hypothetical protein; hypothetical protein 3716942 7174886 DvMF_2944 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437349.1 3715860 R 883 CDS YP_002437350.1 218888029 7174887 complement(3717094..3717591) 1 NC_011769.1 PFAM: cupin; KEGG: mes:Meso_3909 cupin 2, conserved barrel; cupin 3717591 7174887 DvMF_2945 Desulfovibrio vulgaris str. 'Miyazaki F' cupin YP_002437350.1 3717094 R 883 CDS YP_002437351.1 218888030 7174888 complement(3717737..3718792) 1 NC_011769.1 KEGG: ade:Adeh_3213 hypothetical protein; hypothetical protein 3718792 7174888 DvMF_2946 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437351.1 3717737 R 883 CDS YP_002437352.1 218888031 7174889 complement(3718814..3719548) 1 NC_011769.1 PFAM: carboxymuconolactone decarboxylase; KEGG: gbm:Gbem_3979 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 3719548 7174889 DvMF_2947 Desulfovibrio vulgaris str. 'Miyazaki F' carboxymuconolactone decarboxylase YP_002437352.1 3718814 R 883 CDS YP_002437353.1 218888032 7174890 complement(3719776..3720675) 1 NC_011769.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator; KEGG: emi:Emin_0877 AraC family transcriptional regulator; AraC family transcriptional regulator 3720675 7174890 DvMF_2948 Desulfovibrio vulgaris str. 'Miyazaki F' AraC family transcriptional regulator YP_002437353.1 3719776 R 883 CDS YP_002437354.1 218888033 7174891 complement(3720852..3721754) 1 NC_011769.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3721754 panB 7174891 panB Desulfovibrio vulgaris str. 'Miyazaki F' 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_002437354.1 3720852 R 883 CDS YP_002437355.1 218888034 7174892 3722262..3723152 1 NC_011769.1 PFAM: flagellin domain protein; KEGG: dde:Dde_1502 flagellin; flagellin domain-containing protein 3723152 7174892 DvMF_2950 Desulfovibrio vulgaris str. 'Miyazaki F' flagellin domain-containing protein YP_002437355.1 3722262 D 883 CDS YP_002437356.1 218888035 7174893 3723375..3724010 1 NC_011769.1 KEGG: dde:Dde_1503 hypothetical protein; hypothetical protein 3724010 7174893 DvMF_2951 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437356.1 3723375 D 883 CDS YP_002437357.1 218888036 7174894 3724329..3724952 1 NC_011769.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1504 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3724952 7174894 DvMF_2952 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002437357.1 3724329 D 883 CDS YP_002437358.1 218888037 7174895 complement(3725138..3726358) 1 NC_011769.1 PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1335 ABC transporter permease; hypothetical protein 3726358 7174895 DvMF_2953 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437358.1 3725138 R 883 CDS YP_002437359.1 218888038 7174896 complement(3726358..3727689) 1 NC_011769.1 PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0268 ABC-type transporter, permease; ABC transporter permease 3727689 7174896 DvMF_2954 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter permease YP_002437359.1 3726358 R 883 CDS YP_002437360.1 218888039 7174897 complement(3727686..3728438) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1339 ATPase; ABC transporter 3728438 7174897 DvMF_2955 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437360.1 3727686 R 883 CDS YP_002437361.1 218888040 7174898 complement(3728452..3729744) 1 NC_011769.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: dde:Dde_1340 secretion protein HlyD; RND family efflux transporter MFP subunit 3729744 7174898 DvMF_2956 Desulfovibrio vulgaris str. 'Miyazaki F' RND family efflux transporter MFP subunit YP_002437361.1 3728452 R 883 CDS YP_002437362.1 218888041 7174899 complement(3730091..3731137) 1 NC_011769.1 KEGG: dde:Dde_1342 hypothetical protein; hypothetical protein 3731137 7174899 DvMF_2957 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437362.1 3730091 R 883 CDS YP_002437363.1 218888042 7174900 3731469..3731897 1 NC_011769.1 PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1343 HSP20 family protein; heat shock protein Hsp20 3731897 7174900 DvMF_2958 Desulfovibrio vulgaris str. 'Miyazaki F' heat shock protein Hsp20 YP_002437363.1 3731469 D 883 CDS YP_002437364.1 218888043 7174901 3731897..3732328 1 NC_011769.1 PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1344 HSP20 family protein; heat shock protein Hsp20 3732328 7174901 DvMF_2959 Desulfovibrio vulgaris str. 'Miyazaki F' heat shock protein Hsp20 YP_002437364.1 3731897 D 883 CDS YP_002437365.1 218888044 7174902 complement(3732664..3733611) 1 NC_011769.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: lip:LI0097 CorA, CorA-like Mg2+ transporter protein; Mg2 transporter protein CorA family protein 3733611 7174902 DvMF_2960 Desulfovibrio vulgaris str. 'Miyazaki F' Mg2 transporter protein CorA family protein YP_002437365.1 3732664 R 883 CDS YP_002437366.1 218888045 7174903 3734657..3735172 1 NC_011769.1 KEGG: dde:Dde_1345 hypothetical protein; hypothetical protein 3735172 7174903 DvMF_2961 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437366.1 3734657 D 883 CDS YP_002437367.1 218888046 7174904 complement(3735272..3736075) 1 NC_011769.1 TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; KEGG: rci:RCIX2221 nucleoside 5'-monophosphate phosphohydrolase (survival protein); stationary-phase survival protein SurE 3736075 7174904 DvMF_2962 Desulfovibrio vulgaris str. 'Miyazaki F' stationary-phase survival protein SurE YP_002437367.1 3735272 R 883 CDS YP_002437368.1 218888047 7174905 complement(3736161..3739916) 1 NC_011769.1 KEGG: dps:DP3110 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 3739916 7174905 DvMF_2963 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_002437368.1 3736161 R 883 CDS YP_002437369.1 218888048 7174906 3740246..3740512 1 NC_011769.1 PFAM: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein 3740512 7174906 DvMF_2964 Desulfovibrio vulgaris str. 'Miyazaki F' RNP-1 like RNA-binding protein YP_002437369.1 3740246 D 883 CDS YP_002437370.1 218888049 7174907 3740716..3741174 1 NC_011769.1 PFAM: 17 kDa surface antigen; KEGG: dde:Dde_1150 outer membrane lipoprotein-like; 17 kDa surface antigen 3741174 7174907 DvMF_2965 Desulfovibrio vulgaris str. 'Miyazaki F' 17 kDa surface antigen YP_002437370.1 3740716 D 883 CDS YP_002437371.1 218888050 7174908 3741347..3741901 1 NC_011769.1 KEGG: dde:Dde_1349 hypothetical protein; hypothetical protein 3741901 7174908 DvMF_2966 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437371.1 3741347 D 883 CDS YP_002437372.1 218888051 7174909 3742086..3743000 1 NC_011769.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1350 RarD protein; RarD protein, DMT superfamily transporter 3743000 7174909 DvMF_2967 Desulfovibrio vulgaris str. 'Miyazaki F' RarD protein, DMT superfamily transporter YP_002437372.1 3742086 D 883 CDS YP_002437373.1 218888052 7174910 3743181..3744251 1 NC_011769.1 PFAM: extracellular solute-binding protein family 1; KEGG: sit:TM1040_3635 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3744251 7174910 DvMF_2968 Desulfovibrio vulgaris str. 'Miyazaki F' extracellular solute-binding protein YP_002437373.1 3743181 D 883 CDS YP_002437374.1 218888053 7174911 3744570..3745826 1 NC_011769.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: hch:HCH_01472 ABC-type spermidine/putrescine transporter, ATPase components; spermidine/putrescine ABC transporter ATPase 3745826 7174911 DvMF_2969 Desulfovibrio vulgaris str. 'Miyazaki F' spermidine/putrescine ABC transporter ATPase YP_002437374.1 3744570 D 883 CDS YP_002437375.1 218888054 7174912 3745823..3746728 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: hch:HCH_01473 ABC-type spermidine/putrescine transporter, permease I; spermidine/putrescine ABC transporter permease 3746728 7174912 DvMF_2970 Desulfovibrio vulgaris str. 'Miyazaki F' spermidine/putrescine ABC transporter permease YP_002437375.1 3745823 D 883 CDS YP_002437376.1 218888055 7174913 3746725..3747585 1 NC_011769.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transporter, permease II; spermidine/putrescine ABC transporter permease 3747585 7174913 DvMF_2971 Desulfovibrio vulgaris str. 'Miyazaki F' spermidine/putrescine ABC transporter permease YP_002437376.1 3746725 D 883 CDS YP_002437377.1 218888056 7174914 3747860..3748771 1 NC_011769.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sfu:Sfum_0868 glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 3748771 7174914 DvMF_2972 Desulfovibrio vulgaris str. 'Miyazaki F' glycerophosphodiester phosphodiesterase YP_002437377.1 3747860 D 883 CDS YP_002437378.1 218888057 7174915 3749108..3750070 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ava:Ava_1542 hypothetical protein; hypothetical protein 3750070 7174915 DvMF_2973 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437378.1 3749108 D 883 CDS YP_002437379.1 218888058 7174916 complement(3750158..3750640) 1 NC_011769.1 PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 transcriptional regulator; HxlR family transcriptional regulator 3750640 7174916 DvMF_2974 Desulfovibrio vulgaris str. 'Miyazaki F' HxlR family transcriptional regulator YP_002437379.1 3750158 R 883 CDS YP_002437380.1 218888059 7174917 3750929..3751438 1 NC_011769.1 PFAM: nitroreductase; KEGG: mba:Mbar_A1379 NADPH-flavin oxidoreductase; nitroreductase 3751438 7174917 DvMF_2975 Desulfovibrio vulgaris str. 'Miyazaki F' nitroreductase YP_002437380.1 3750929 D 883 CDS YP_002437381.1 218888060 7174918 3751440..3751628 1 NC_011769.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: msi:Msm_0688 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 3751628 7174918 DvMF_2976 Desulfovibrio vulgaris str. 'Miyazaki F' 4-oxalocrotonate tautomerase YP_002437381.1 3751440 D 883 CDS YP_002437382.1 218888061 7174919 3751742..3752860 1 NC_011769.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pca:Pcar_0069 NADH:flavin oxidoreductases, Old Yellow enzyme family; NADH:flavin oxidoreductase 3752860 7174919 DvMF_2977 Desulfovibrio vulgaris str. 'Miyazaki F' NADH:flavin oxidoreductase YP_002437382.1 3751742 D 883 CDS YP_002437383.1 218888062 7174920 3753038..3753370 1 NC_011769.1 KEGG: dde:Dde_1354 hypothetical protein; hypothetical protein 3753370 7174920 DvMF_2978 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437383.1 3753038 D 883 CDS YP_002437384.1 218888063 7174921 3753510..3754124 1 NC_011769.1 PFAM: NADPH-dependent FMN reductase; KEGG: mbn:Mboo_0650 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 3754124 7174921 DvMF_2979 Desulfovibrio vulgaris str. 'Miyazaki F' NADPH-dependent FMN reductase YP_002437384.1 3753510 D 883 CDS YP_002437385.1 218888064 7174922 3754410..3754916 1 NC_011769.1 PFAM: rhodanese; KEGG: dde:Dde_1355 rhodanese-like protein; rhodanese 3754916 7174922 DvMF_2980 Desulfovibrio vulgaris str. 'Miyazaki F' rhodanese YP_002437385.1 3754410 D 883 CDS YP_002437386.1 218888065 7174923 3755027..3755596 1 NC_011769.1 PFAM: VanZ family protein; KEGG: xfn:XfasM23_0713 VanZ family protein; VanZ family protein 3755596 7174923 DvMF_2981 Desulfovibrio vulgaris str. 'Miyazaki F' VanZ family protein YP_002437386.1 3755027 D 883 CDS YP_002437387.1 218888066 7174924 complement(3755778..3755999) 1 NC_011769.1 PFAM: SlyX family protein; KEGG: dde:Dde_1356 SlyX protein; SlyX family protein 3755999 7174924 DvMF_2982 Desulfovibrio vulgaris str. 'Miyazaki F' SlyX family protein YP_002437387.1 3755778 R 883 CDS YP_002437388.1 218888067 7174925 complement(3756097..3756564) 1 NC_011769.1 PFAM: protein of unknown function DUF55; KEGG: dde:Dde_1357 hypothetical protein; hypothetical protein 3756564 7174925 DvMF_2983 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437388.1 3756097 R 883 CDS YP_002437389.1 218888068 7174926 3756741..3759431 1 NC_011769.1 KEGG: rno:84352 collagen, type I, alpha 2; hypothetical protein 3759431 7174926 DvMF_2984 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437389.1 3756741 D 883 CDS YP_002437390.1 218888069 7174927 complement(3759533..3761848) 1 NC_011769.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1359 elongator protein 3/MiaB/NifB; radical SAM protein 3761848 7174927 DvMF_2985 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002437390.1 3759533 R 883 CDS YP_002437391.1 218888070 7174928 3762159..3765845 1 NC_011769.1 KEGG: dde:Dde_1360 GAF sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 3765845 7174928 DvMF_2986 Desulfovibrio vulgaris str. 'Miyazaki F' multi-sensor hybrid histidine kinase YP_002437391.1 3762159 D 883 CDS YP_002437392.1 218888071 7174929 complement(3766053..3766406) 1 NC_011769.1 KEGG: dde:Dde_1362 EF hand domain-containing protein; EF hand domain-containing protein 3766406 7174929 DvMF_2987 Desulfovibrio vulgaris str. 'Miyazaki F' EF hand domain-containing protein YP_002437392.1 3766053 R 883 CDS YP_002437393.1 218888072 7174930 complement(3766767..3768821) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 3768821 7174930 DvMF_2988 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Cache sensor YP_002437393.1 3766767 R 883 CDS YP_002437394.1 218888073 7174932 complement(3769312..3770694) 1 NC_011769.1 PFAM: Na+/H+ antiporter NhaA; KEGG: dde:Dde_2771 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 3770694 7174932 DvMF_2989 Desulfovibrio vulgaris str. 'Miyazaki F' Na+/H+ antiporter NhaA YP_002437394.1 3769312 R 883 CDS YP_002437395.1 218888074 7174933 3771100..3771780 1 NC_011769.1 PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: rpe:RPE_0932 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 3771780 7174933 DvMF_2990 Desulfovibrio vulgaris str. 'Miyazaki F' isoprenylcysteine carboxyl methyltransferase YP_002437395.1 3771100 D 883 CDS YP_002437396.1 218888075 7174934 3771865..3773058 1 NC_011769.1 PFAM: radical SAM protein; KEGG: pcl:Pcal_0853 radical SAM protein; radical SAM protein 3773058 7174934 DvMF_2991 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002437396.1 3771865 D 883 CDS YP_002437397.1 218888076 7174935 complement(3773202..3776096) 1 NC_011769.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rca:Rcas_0372 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 3776096 7174935 DvMF_2992 Desulfovibrio vulgaris str. 'Miyazaki F' P-type HAD superfamily ATPase YP_002437397.1 3773202 R 883 CDS YP_002437398.1 218888077 7174937 3776852..3778357 1 NC_011769.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_1365 lysyl-tRNA synthetase; lysyl-tRNA synthetase 3778357 7174937 DvMF_2993 Desulfovibrio vulgaris str. 'Miyazaki F' lysyl-tRNA synthetase YP_002437398.1 3776852 D 883 CDS YP_002437399.1 218888078 7174938 3778368..3779621 1 NC_011769.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1366 LolC/E family lipoprotein releasing system, transmembrane protein; lipoprotein releasing system transmembrane protein LolC/E family 3779621 7174938 DvMF_2994 Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein releasing system transmembrane protein LolC/E family YP_002437399.1 3778368 D 883 CDS YP_002437400.1 218888079 7174939 3779618..3780382 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1367 ATPase; ABC transporter 3780382 7174939 DvMF_2995 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437400.1 3779618 D 883 CDS YP_002437401.1 218888080 7174940 3780366..3783053 1 NC_011769.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dde:Dde_1368 OMP85 family outer membrane protein; outer membrane protein assembly complex, YaeT protein 3783053 7174940 DvMF_2996 Desulfovibrio vulgaris str. 'Miyazaki F' outer membrane protein assembly complex, YaeT protein YP_002437401.1 3780366 D 883 CDS YP_002437402.1 218888081 7174941 3783460..3785829 1 NC_011769.1 PFAM: cell wall hydrolase/autolysin; KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 3785829 7174941 DvMF_2997 Desulfovibrio vulgaris str. 'Miyazaki F' N-acetylmuramoyl-L-alanine amidase YP_002437402.1 3783460 D 883 CDS YP_002437403.1 218888082 7174942 3786068..3786595 1 NC_011769.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: dde:Dde_1371 outer membrane protein OmpH; outer membrane chaperone Skp 3786595 7174942 DvMF_2998 Desulfovibrio vulgaris str. 'Miyazaki F' outer membrane chaperone Skp YP_002437403.1 3786068 D 883 CDS YP_002437404.1 218888083 7174943 3786606..3787637 1 NC_011769.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: dde:Dde_1372 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 3787637 7174943 DvMF_2999 Desulfovibrio vulgaris str. 'Miyazaki F' UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_002437404.1 3786606 D 883 CDS YP_002437405.1 218888084 7174944 3787639..3788103 1 NC_011769.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 3788103 fabZ 7174944 fabZ Desulfovibrio vulgaris str. 'Miyazaki F' (3R)-hydroxymyristoyl-ACP dehydratase YP_002437405.1 3787639 D 883 CDS YP_002437406.1 218888085 7174945 3788103..3788903 1 NC_011769.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 3788903 7174945 DvMF_3001 Desulfovibrio vulgaris str. 'Miyazaki F' UDP-N-acetylglucosamine acyltransferase YP_002437406.1 3788103 D 883 CDS YP_002437407.1 218888086 7174946 3789088..3789933 1 NC_011769.1 PFAM: protein of unknown function DUF1009; KEGG: dde:Dde_1375 hypothetical protein; hypothetical protein 3789933 7174946 DvMF_3002 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437407.1 3789088 D 883 CDS YP_002437408.1 218888087 7174947 3790053..3791237 1 NC_011769.1 PFAM: aminotransferase class I and II; KEGG: rci:RRC4 aminotransferase; GntR family transcriptional regulator 3791237 7174947 DvMF_3003 Desulfovibrio vulgaris str. 'Miyazaki F' GntR family transcriptional regulator YP_002437408.1 3790053 D 883 CDS YP_002437409.1 218888088 7174948 complement(3791388..3791849) 1 NC_011769.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mla:Mlab_1007 hypothetical protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding protein 3791849 7174948 DvMF_3004 Desulfovibrio vulgaris str. 'Miyazaki F' pyridoxamine 5'-phosphate oxidase-related FMN-binding protein YP_002437409.1 3791388 R 883 CDS YP_002437410.1 218888089 7174949 3792047..3793507 1 NC_011769.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cbf:CLI_0717 transcriptional regulator, GntR family/aminotransferase; GntR family transcriptional regulator 3793507 7174949 DvMF_3005 Desulfovibrio vulgaris str. 'Miyazaki F' GntR family transcriptional regulator YP_002437410.1 3792047 D 883 CDS YP_002437411.1 218888090 7174950 3793616..3794419 1 NC_011769.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 3794419 7174950 DvMF_3006 Desulfovibrio vulgaris str. 'Miyazaki F' hydroxyethylthiazole kinase YP_002437411.1 3793616 D 883 CDS YP_002437412.1 218888091 7174951 3794425..3795066 1 NC_011769.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 3795066 thiE 7174951 thiE Desulfovibrio vulgaris str. 'Miyazaki F' thiamine-phosphate pyrophosphorylase YP_002437412.1 3794425 D 883 CDS YP_002437413.1 218888092 7174952 3795294..3795629 1 NC_011769.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_1380 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 3795629 7174952 DvMF_3008 Desulfovibrio vulgaris str. 'Miyazaki F' dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_002437413.1 3795294 D 883 CDS YP_002437414.1 218888093 7174953 complement(3795729..3796493) 1 NC_011769.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1381 ferric reductase-like; oxidoreductase FAD/NAD(P)-binding domain-containing protein 3796493 7174953 DvMF_3009 Desulfovibrio vulgaris str. 'Miyazaki F' oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_002437414.1 3795729 R 883 CDS YP_002437415.1 218888094 7174954 complement(3796862..3798667) 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_1399 ATPase; Fis family transcriptional regulator 3798667 7174954 DvMF_3010 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002437415.1 3796862 R 883 CDS YP_002437416.1 218888095 7174955 3799275..3800411 1 NC_011769.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; KEGG: dde:Dde_1400 signal transduction protein; metal dependent phosphohydrolase 3800411 7174955 DvMF_3011 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002437416.1 3799275 D 883 CDS YP_002437417.1 218888096 7174956 complement(3800563..3802239) 1 NC_011769.1 KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I; hypothetical protein 3802239 7174956 DvMF_3012 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437417.1 3800563 R 883 CDS YP_002437418.1 218888097 7174957 complement(3802211..3802933) 1 NC_011769.1 KEGG: pma:Pro1264 hypothetical protein; hypothetical protein 3802933 7174957 DvMF_3013 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437418.1 3802211 R 883 CDS YP_002437419.1 218888098 7174958 complement(3803116..3803847) 1 NC_011769.1 KEGG: mac:MA2205 hypothetical protein; hypothetical protein 3803847 7174958 DvMF_3014 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437419.1 3803116 R 883 CDS YP_002437420.1 218888099 7174959 complement(3804076..3805347) 1 NC_011769.1 PFAM: aminotransferase class I and II; KEGG: dde:Dde_1401 L-threonine O-3-phosphate decarboxylase; class I and II aminotransferase 3805347 7174959 DvMF_3015 Desulfovibrio vulgaris str. 'Miyazaki F' class I and II aminotransferase YP_002437420.1 3804076 R 883 CDS YP_002437421.1 218888100 7174960 complement(3805340..3806461) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1402 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 3806461 7174960 DvMF_3016 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002437421.1 3805340 R 883 CDS YP_002437422.1 218888101 7174961 complement(3806565..3807647) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: lip:LI0824 glycosyltransferase; group 1 glycosyl transferase 3807647 7174961 DvMF_3017 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002437422.1 3806565 R 883 CDS YP_002437423.1 218888102 7174962 complement(3807644..3808984) 1 NC_011769.1 PFAM: O-antigen polymerase; KEGG: lip:LI0825 lipid A core-O-antigen ligase and related enzymes; O-antigen polymerase 3808984 7174962 DvMF_3018 Desulfovibrio vulgaris str. 'Miyazaki F' O-antigen polymerase YP_002437423.1 3807644 R 883 CDS YP_002437424.1 218888103 7174963 complement(3809053..3810165) 1 NC_011769.1 PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0593 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 3810165 7174963 DvMF_3019 Desulfovibrio vulgaris str. 'Miyazaki F' group 1 glycosyl transferase YP_002437424.1 3809053 R 883 CDS YP_002437425.1 218888104 7174964 3810564..3812063 1 NC_011769.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: dde:Dde_1405 two component Fis family transcriptional regulator; Fis family transcriptional regulator 3812063 7174964 DvMF_3020 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002437425.1 3810564 D 883 CDS YP_002437426.1 218888105 7174965 3812442..3814367 1 NC_011769.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 3814367 7174965 DvMF_3021 Desulfovibrio vulgaris str. 'Miyazaki F' aconitate hydratase YP_002437426.1 3812442 D 883 CDS YP_002437427.1 218888106 7174966 3814500..3816392 1 NC_011769.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dde:Dde_1407 peptidyl-prolyl cis-trans isomerse domain-containing protein; PpiC-type peptidyl-prolyl cis-trans isomerase 3816392 7174966 DvMF_3022 Desulfovibrio vulgaris str. 'Miyazaki F' PpiC-type peptidyl-prolyl cis-trans isomerase YP_002437427.1 3814500 D 883 CDS YP_002437428.1 218888107 7174967 3816895..3818472 1 NC_011769.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cte:CT0498 ammonium transporter; ammonium transporter 3818472 7174967 DvMF_3023 Desulfovibrio vulgaris str. 'Miyazaki F' ammonium transporter YP_002437428.1 3816895 D 883 CDS YP_002437429.1 218888108 7174968 3818482..3818820 1 NC_011769.1 PFAM: nitrogen regulatory protein P-II; KEGG: sul:SYO3AOP1_0047 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3818820 7174968 DvMF_3024 Desulfovibrio vulgaris str. 'Miyazaki F' nitrogen regulatory protein P-II YP_002437429.1 3818482 D 883 CDS YP_002437430.1 218888109 7174969 3819131..3819622 1 NC_011769.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 3819622 7174969 DvMF_3025 Desulfovibrio vulgaris str. 'Miyazaki F' xanthine-guanine phosphoribosyltransferase YP_002437430.1 3819131 D 883 CDS YP_002437431.1 218888110 7174970 3819757..3820899 1 NC_011769.1 PFAM: basic membrane lipoprotein; KEGG: dde:Dde_1507 Bmp family membrane protein; basic membrane lipoprotein 3820899 7174970 DvMF_3026 Desulfovibrio vulgaris str. 'Miyazaki F' basic membrane lipoprotein YP_002437431.1 3819757 D 883 CDS YP_002437432.1 218888111 7174971 3820929..3822002 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_1508 branched-chain amino acid ABC transporter permease; inner-membrane translocator 3822002 7174971 DvMF_3027 Desulfovibrio vulgaris str. 'Miyazaki F' inner-membrane translocator YP_002437432.1 3820929 D 883 CDS YP_002437433.1 218888112 7174972 3822004..3822930 1 NC_011769.1 PFAM: inner-membrane translocator; KEGG: dde:Dde_1509 branched chain amino acid ABC transporter permease; inner-membrane translocator 3822930 7174972 DvMF_3028 Desulfovibrio vulgaris str. 'Miyazaki F' inner-membrane translocator YP_002437433.1 3822004 D 883 CDS YP_002437434.1 218888113 7174973 3822935..3824548 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1510 ATPase; ABC transporter 3824548 7174973 DvMF_3029 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437434.1 3822935 D 883 CDS YP_002437435.1 218888114 7174974 complement(3824685..3824996) 1 NC_011769.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: ank:AnaeK_2303 regulatory protein, FmdB family; FmdB family regulatory protein 3824996 7174974 DvMF_3030 Desulfovibrio vulgaris str. 'Miyazaki F' FmdB family regulatory protein YP_002437435.1 3824685 R 883 CDS YP_002437436.1 218888115 7174975 3825477..3826064 1 NC_011769.1 TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dde:Dde_1169 peptidase C56, PfpI; PfpI family intracellular protease 3826064 7174975 DvMF_3031 Desulfovibrio vulgaris str. 'Miyazaki F' PfpI family intracellular protease YP_002437436.1 3825477 D 883 CDS YP_002437437.1 218888116 7174976 3826332..3827222 1 NC_011769.1 PFAM: dienelactone hydrolase; KEGG: gbm:Gbem_2303 dienelactone hydrolase; dienelactone hydrolase 3827222 7174976 DvMF_3032 Desulfovibrio vulgaris str. 'Miyazaki F' dienelactone hydrolase YP_002437437.1 3826332 D 883 CDS YP_002437438.1 218888117 7174977 complement(3827354..3828250) 1 NC_011769.1 KEGG: lip:LI0093 hypothetical protein; hypothetical protein 3828250 7174977 DvMF_3033 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437438.1 3827354 R 883 CDS YP_002437439.1 218888118 7174978 3828930..3829805 1 NC_011769.1 KEGG: dde:Dde_2525 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 3829805 7174978 DvMF_3034 Desulfovibrio vulgaris str. 'Miyazaki F' 5,10-methylenetetrahydrofolate reductase YP_002437439.1 3828930 D 883 CDS YP_002437440.1 218888119 7174979 3830586..3831611 1 NC_011769.1 PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein; glycosyl transferase family protein 3831611 7174979 DvMF_3035 Desulfovibrio vulgaris str. 'Miyazaki F' glycosyl transferase family protein YP_002437440.1 3830586 D 883 CDS YP_002437441.1 218888120 7174981 3832307..3834502 1 NC_011769.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: dde:Dde_1301 thiol:disulfide interchange protein-like; cytochrome C biogenesis protein transmembrane region 3834502 7174981 DvMF_3036 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C biogenesis protein transmembrane region YP_002437441.1 3832307 D 883 CDS YP_002437442.1 218888121 7174982 complement(3834657..3835175) 1 NC_011769.1 KEGG: wsu:WS1185 hypothetical protein; hypothetical protein 3835175 7174982 DvMF_3037 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437442.1 3834657 R 883 CDS YP_002437443.1 218888122 7174983 complement(3835379..3836008) 1 NC_011769.1 PFAM: regulatory protein TetR; KEGG: gme:Gmet_0803 TetR family transcriptional regulator; TetR family transcriptional regulator 3836008 7174983 DvMF_3038 Desulfovibrio vulgaris str. 'Miyazaki F' TetR family transcriptional regulator YP_002437443.1 3835379 R 883 CDS YP_002437444.1 218888123 7174984 complement(3836186..3837445) 1 NC_011769.1 PFAM: peptidase M24; KEGG: dde:Dde_1305 M24 family peptidase; peptidase M24 3837445 7174984 DvMF_3039 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M24 YP_002437444.1 3836186 R 883 CDS YP_002437445.1 218888124 7174985 3837889..3838311 1 NC_011769.1 KEGG: dde:Dde_1304 coenzyme A binding protein; coenzyme A binding protein 3838311 7174985 DvMF_3040 Desulfovibrio vulgaris str. 'Miyazaki F' coenzyme A binding protein YP_002437445.1 3837889 D 883 CDS YP_002437446.1 218888125 7174986 3838308..3838835 1 NC_011769.1 PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_1303 hypothetical protein; hypothetical protein 3838835 7174986 DvMF_3041 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437446.1 3838308 D 883 CDS YP_002437447.1 218888126 7174987 3838940..3839908 1 NC_011769.1 PFAM: heat shock protein DnaJ domain protein; KEGG: dde:Dde_1302 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein 3839908 7174987 DvMF_3042 Desulfovibrio vulgaris str. 'Miyazaki F' heat shock protein DnaJ domain-containing protein YP_002437447.1 3838940 D 883 CDS YP_002437448.1 218888127 7174988 complement(3840003..3840974) 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_2856 hypothetical protein; hypothetical protein 3840974 7174988 DvMF_3043 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437448.1 3840003 R 883 CDS YP_002437449.1 218888128 7174989 3841260..3842492 1 NC_011769.1 KEGG: dde:Dde_2854 hypothetical protein; hypothetical protein 3842492 7174989 DvMF_3044 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437449.1 3841260 D 883 CDS YP_002437450.1 218888129 7174990 complement(3842707..3843156) 1 NC_011769.1 KEGG: dde:Dde_1443 hypothetical protein; hypothetical protein 3843156 7174990 DvMF_3045 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437450.1 3842707 R 883 CDS YP_002437451.1 218888130 7174991 3843512..3844156 1 NC_011769.1 PFAM: cobalbumin biosynthesis protein; KEGG: gme:Gmet_0466 adenosylcobinamide kinase; cobalbumin biosynthesis protein 3844156 7174991 DvMF_3046 Desulfovibrio vulgaris str. 'Miyazaki F' cobalbumin biosynthesis protein YP_002437451.1 3843512 D 883 CDS YP_002437452.1 218888131 7174992 3844535..3845275 1 NC_011769.1 KEGG: lip:LI0104 NA; hypothetical protein 3845275 7174992 DvMF_3047 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437452.1 3844535 D 883 CDS YP_002437453.1 218888132 7174994 complement(3845869..3846501) 1 NC_011769.1 hypothetical protein 3846501 7174994 DvMF_3048 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437453.1 3845869 R 883 CDS YP_002437454.1 218888133 7174995 3846884..3847570 1 NC_011769.1 PFAM: protein of unknown function DUF554; KEGG: dde:Dde_2488 hypothetical protein; hypothetical protein 3847570 7174995 DvMF_3049 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437454.1 3846884 D 883 CDS YP_002437455.1 218888134 7174996 3848195..3851590 1 NC_011769.1 TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter related; KEGG: dde:Dde_2486 excinuclease ABC subunit A; excinuclease ABC subunit A 3851590 7174996 DvMF_3050 Desulfovibrio vulgaris str. 'Miyazaki F' excinuclease ABC subunit A YP_002437455.1 3848195 D 883 CDS YP_002437456.1 218888135 7174997 3851950..3853206 1 NC_011769.1 PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein; hypothetical protein 3853206 7174997 DvMF_3051 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437456.1 3851950 D 883 CDS YP_002437457.1 218888136 7174998 3853604..3854464 1 NC_011769.1 KEGG: sfu:Sfum_1959 molybdenum ABC transporter solute-binding protein; molybdenum ABC transporter solute-binding protein 3854464 7174998 DvMF_3052 Desulfovibrio vulgaris str. 'Miyazaki F' molybdenum ABC transporter solute-binding protein YP_002437457.1 3853604 D 883 CDS YP_002437458.1 218888137 7174999 3854457..3855275 1 NC_011769.1 KEGG: sfu:Sfum_1960 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3855275 7174999 DvMF_3053 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002437458.1 3854457 D 883 CDS YP_002437459.1 218888138 7175000 3855272..3856249 1 NC_011769.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB; radical SAM protein 3856249 7175000 DvMF_3054 Desulfovibrio vulgaris str. 'Miyazaki F' radical SAM protein YP_002437459.1 3855272 D 883 CDS YP_002437460.1 218888139 7175001 complement(3856372..3857100) 1 NC_011769.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; KEGG: eba:ebA872 peptide methionine sulfoxide reductase MsrA; peptide methionine sulfoxide reductase 3857100 7175001 DvMF_3055 Desulfovibrio vulgaris str. 'Miyazaki F' peptide methionine sulfoxide reductase YP_002437460.1 3856372 R 883 CDS YP_002437461.1 218888140 7175002 complement(3857273..3858325) 1 NC_011769.1 PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_2481 hypothetical protein; aminoglycoside phosphotransferase 3858325 7175002 DvMF_3056 Desulfovibrio vulgaris str. 'Miyazaki F' aminoglycoside phosphotransferase YP_002437461.1 3857273 R 883 CDS YP_002437462.1 218888141 7175003 3858618..3860351 1 NC_011769.1 PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: glo:Glov_2618 DEAD/DEAH box helicase; DEAD/DEAH box helicase 3860351 7175003 DvMF_3057 Desulfovibrio vulgaris str. 'Miyazaki F' DEAD/DEAH box helicase YP_002437462.1 3858618 D 883 CDS YP_002437463.1 218888142 7175004 3860590..3861081 1 NC_011769.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 3861081 7175004 DvMF_3058 Desulfovibrio vulgaris str. 'Miyazaki F' nucleotide-binding protein YP_002437463.1 3860590 D 883 CDS YP_002437464.1 218888143 7175005 complement(3861624..3862022) 1 NC_011769.1 KEGG: dde:Dde_2478 hypothetical protein; hypothetical protein 3862022 7175005 DvMF_3059 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437464.1 3861624 R 883 CDS YP_002437465.1 218888144 7175006 complement(3862256..3864235) 1 NC_011769.1 PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3864235 7175006 DvMF_3060 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002437465.1 3862256 R 883 CDS YP_002437466.1 218888145 7175007 3864595..3866586 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2477 ATPase; ABC transporter 3866586 7175007 DvMF_3061 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437466.1 3864595 D 883 CDS YP_002437467.1 218888146 7175008 3866801..3868207 1 NC_011769.1 PFAM: Na+/H+ antiporter NhaC; KEGG: dde:Dde_2476 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 3868207 7175008 DvMF_3062 Desulfovibrio vulgaris str. 'Miyazaki F' Na+/H+ antiporter NhaC YP_002437467.1 3866801 D 883 CDS YP_002437468.1 218888147 7175009 3868743..3869030 1 NC_011769.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 3869030 groES 7175009 groES Desulfovibrio vulgaris str. 'Miyazaki F' co-chaperonin GroES YP_002437468.1 3868743 D 883 CDS YP_002437469.1 218888148 7175010 3869074..3870720 1 NC_011769.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 3870720 groEL 7175010 groEL Desulfovibrio vulgaris str. 'Miyazaki F' chaperonin GroEL YP_002437469.1 3869074 D 883 CDS YP_002437470.1 218888149 7175011 3870930..3871478 1 NC_011769.1 KEGG: dde:Dde_2471 HAD family hydrolase; HAD family hydrolase 3871478 7175011 DvMF_3065 Desulfovibrio vulgaris str. 'Miyazaki F' HAD family hydrolase YP_002437470.1 3870930 D 883 CDS YP_002437471.1 218888150 7175012 complement(3871763..3872029) 1 NC_011769.1 KEGG: dde:Dde_2470 hypothetical protein; hypothetical protein 3872029 7175012 DvMF_3066 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437471.1 3871763 R 883 CDS YP_002437472.1 218888151 7175013 3872867..3874483 1 NC_011769.1 PFAM: virulence factor MVIN family protein; KEGG: dde:Dde_2468 integral membrane protein MviN; virulence factor MVIN family protein 3874483 7175013 DvMF_3067 Desulfovibrio vulgaris str. 'Miyazaki F' virulence factor MVIN family protein YP_002437472.1 3872867 D 883 CDS YP_002437473.1 218888152 7175014 complement(3874640..3875017) 1 NC_011769.1 KEGG: dde:Dde_2464 hypothetical protein; hypothetical protein 3875017 7175014 DvMF_3068 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437473.1 3874640 R 883 CDS YP_002437474.1 218888153 7175015 complement(3875119..3875436) 1 NC_011769.1 hypothetical protein 3875436 7175015 DvMF_3069 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437474.1 3875119 R 883 CDS YP_002437475.1 218888154 7175016 complement(3875584..3876147) 1 NC_011769.1 KEGG: dde:Dde_2462 hypothetical protein; hypothetical protein 3876147 7175016 DvMF_3070 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437475.1 3875584 R 883 CDS YP_002437476.1 218888155 7175017 complement(3876615..3877106) 1 NC_011769.1 PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_0818 hypothetical protein; type IV pilus assembly PilZ 3877106 7175017 DvMF_3071 Desulfovibrio vulgaris str. 'Miyazaki F' type IV pilus assembly PilZ YP_002437476.1 3876615 R 883 CDS YP_002437477.1 218888156 7175018 3877657..3879486 1 NC_011769.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3097 two component Fis family transcriptional regulator; Fis family transcriptional regulator 3879486 7175018 DvMF_3072 Desulfovibrio vulgaris str. 'Miyazaki F' Fis family transcriptional regulator YP_002437477.1 3877657 D 883 CDS YP_002437478.1 218888157 7175019 3879808..3881841 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3881841 7175019 DvMF_3073 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer YP_002437478.1 3879808 D 883 CDS YP_002437479.1 218888158 7175020 complement(3882183..3883274) 1 NC_011769.1 KEGG: dde:Dde_2457 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; response regulator receiver modulated metal dependent phosphohydrolase 3883274 7175020 DvMF_3074 Desulfovibrio vulgaris str. 'Miyazaki F' response regulator receiver modulated metal dependent phosphohydrolase YP_002437479.1 3882183 R 883 CDS YP_002437480.1 218888159 7175021 complement(3883575..3884486) 1 NC_011769.1 SMART: PAS domain containing protein; KEGG: dde:Dde_2456 PAS/PAC sensor protein; signal transduction histidine kinase regulating citrate/malate metabolism 3884486 7175021 DvMF_3075 Desulfovibrio vulgaris str. 'Miyazaki F' signal transduction histidine kinase regulating citrate/malate metabolism YP_002437480.1 3883575 R 883 CDS YP_002437481.1 218888160 7175022 complement(3884479..3885705) 1 NC_011769.1 PFAM: metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_2455 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3885705 7175022 DvMF_3076 Desulfovibrio vulgaris str. 'Miyazaki F' metal dependent phosphohydrolase YP_002437481.1 3884479 R 883 CDS YP_002437482.1 218888161 7175023 3886409..3886885 1 NC_011769.1 PFAM: colicin V production protein; KEGG: dde:Dde_2454 colicin V production family protein; colicin V production protein 3886885 7175023 DvMF_3077 Desulfovibrio vulgaris str. 'Miyazaki F' colicin V production protein YP_002437482.1 3886409 D 883 CDS YP_002437483.1 218888162 7175024 3887001..3887864 1 NC_011769.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3887864 mazG 7175024 mazG Desulfovibrio vulgaris str. 'Miyazaki F' nucleoside triphosphate pyrophosphohydrolase YP_002437483.1 3887001 D 883 CDS YP_002437484.1 218888163 7175025 3887864..3889366 1 NC_011769.1 KEGG: dde:Dde_2452 hypothetical protein; hypothetical protein 3889366 7175025 DvMF_3079 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437484.1 3887864 D 883 CDS YP_002437485.1 218888164 7175026 complement(3889434..3889640) 1 NC_011769.1 KEGG: dde:Dde_2451 hypothetical protein; hypothetical protein 3889640 7175026 DvMF_3080 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437485.1 3889434 R 883 CDS YP_002437486.1 218888165 7175027 3889855..3890037 1 NC_011769.1 KEGG: dde:Dde_2449 hypothetical protein; hypothetical protein 3890037 7175027 DvMF_3081 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437486.1 3889855 D 883 CDS YP_002437487.1 218888166 7175028 3890266..3891459 1 NC_011769.1 PFAM: protein of unknown function UPF0118; KEGG: dde:Dde_2448 hypothetical protein; hypothetical protein 3891459 7175028 DvMF_3082 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437487.1 3890266 D 883 CDS YP_002437488.1 218888167 7175029 3891763..3894993 1 NC_011769.1 KEGG: dde:Dde_2447 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3894993 7175029 DvMF_3083 Desulfovibrio vulgaris str. 'Miyazaki F' PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_002437488.1 3891763 D 883 CDS YP_002437489.1 218888168 7175030 complement(3895393..3898089) 1 NC_011769.1 KEGG: dde:Dde_2444 Lon-A peptidase; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA central domain protein; ATPase AAA; SMART: AAA ATPase; ATP-dependent protease La 3898089 7175030 DvMF_3084 Desulfovibrio vulgaris str. 'Miyazaki F' ATP-dependent protease La YP_002437489.1 3895393 R 883 CDS YP_002437490.1 218888169 7175031 complement(3898109..3898447) 1 NC_011769.1 PFAM: acylphosphatase; KEGG: sru:SRU_2068 acylphosphatase; acylphosphatase 3898447 7175031 DvMF_3085 Desulfovibrio vulgaris str. 'Miyazaki F' acylphosphatase YP_002437490.1 3898109 R 883 CDS YP_002437491.1 218888170 7175032 complement(3898594..3899271) 1 NC_011769.1 PFAM: DNA repair protein RadC; KEGG: dde:Dde_2442 DNA repair protein RadC; DNA repair protein RadC 3899271 7175032 DvMF_3086 Desulfovibrio vulgaris str. 'Miyazaki F' DNA repair protein RadC YP_002437491.1 3898594 R 883 CDS YP_002437492.1 218888171 7175033 complement(3899268..3899411) 1 NC_011769.1 hypothetical protein 3899411 7175033 DvMF_3087 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437492.1 3899268 R 883 CDS YP_002437493.1 218888172 7175034 complement(3899415..3900566) 1 NC_011769.1 KEGG: dde:Dde_2441 hypothetical protein; hypothetical protein 3900566 7175034 DvMF_3088 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437493.1 3899415 R 883 CDS YP_002437494.1 218888173 7175035 complement(3900658..3901176) 1 NC_011769.1 KEGG: dde:Dde_2440 lipoprotein; lipoprotein 3901176 7175035 DvMF_3089 Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein YP_002437494.1 3900658 R 883 CDS YP_002437495.1 218888174 7175036 complement(3901245..3903749) 1 NC_011769.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3903749 leuS 7175036 leuS Desulfovibrio vulgaris str. 'Miyazaki F' leucyl-tRNA synthetase YP_002437495.1 3901245 R 883 CDS YP_002437496.1 218888175 7175037 complement(3904102..3904599) 1 NC_011769.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: dde:Dde_2438 transcription antitermination factor NusB; NusB antitermination factor 3904599 7175037 DvMF_3091 Desulfovibrio vulgaris str. 'Miyazaki F' NusB antitermination factor YP_002437496.1 3904102 R 883 CDS YP_002437497.1 218888176 7175038 complement(3904604..3905074) 1 NC_011769.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 3905074 ribH 7175038 ribH Desulfovibrio vulgaris str. 'Miyazaki F' 6,7-dimethyl-8-ribityllumazine synthase YP_002437497.1 3904604 R 883 CDS YP_002437498.1 218888177 7175039 complement(3905175..3906404) 1 NC_011769.1 KEGG: dde:Dde_2436 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3906404 7175039 DvMF_3093 Desulfovibrio vulgaris str. 'Miyazaki F' 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002437498.1 3905175 R 883 CDS YP_002437499.1 218888178 7175040 complement(3906494..3907186) 1 NC_011769.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3907186 7175040 DvMF_3094 Desulfovibrio vulgaris str. 'Miyazaki F' riboflavin synthase subunit alpha YP_002437499.1 3906494 R 883 CDS YP_002437500.1 218888179 7175041 complement(3907229..3908488) 1 NC_011769.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: dde:Dde_2434 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin biosynthesis protein RibD 3908488 7175041 DvMF_3095 Desulfovibrio vulgaris str. 'Miyazaki F' riboflavin biosynthesis protein RibD YP_002437500.1 3907229 R 883 CDS YP_002437501.1 218888180 7175042 complement(3908493..3909041) 1 NC_011769.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_2433 cytidine/deoxycytidylate deaminase family protein; zinc-binding CMP/dCMP deaminase 3909041 7175042 DvMF_3096 Desulfovibrio vulgaris str. 'Miyazaki F' zinc-binding CMP/dCMP deaminase YP_002437501.1 3908493 R 883 CDS YP_002437502.1 218888181 7175043 complement(3909346..3910584) 1 NC_011769.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3910584 glyA 7175043 glyA Desulfovibrio vulgaris str. 'Miyazaki F' serine hydroxymethyltransferase YP_002437502.1 3909346 R 883 CDS YP_002437503.1 218888182 7175044 complement(3910904..3912151) 1 NC_011769.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: dde:Dde_2431 3-oxoacyl-[acyl-carrier-protein] synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase 2 3912151 7175044 DvMF_3098 Desulfovibrio vulgaris str. 'Miyazaki F' 3-oxoacyl-(acyl-carrier-protein) synthase 2 YP_002437503.1 3910904 R 883 CDS YP_002437504.1 218888183 7175045 complement(3912331..3912561) 1 NC_011769.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 3912561 acpP 7175045 acpP Desulfovibrio vulgaris str. 'Miyazaki F' acyl carrier protein YP_002437504.1 3912331 R 883 CDS YP_002437505.1 218888184 7175046 complement(3912747..3913490) 1 NC_011769.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dde:Dde_2429 3-oxoacyl-[acyl-carrier-protein] reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 3913490 7175046 DvMF_3100 Desulfovibrio vulgaris str. 'Miyazaki F' 3-oxoacyl-(acyl-carrier-protein) reductase YP_002437505.1 3912747 R 883 CDS YP_002437506.1 218888185 7175047 complement(3913751..3914743) 1 NC_011769.1 KEGG: dde:Dde_2428 3-oxoacyl-[acyl-carrier-protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 3914743 7175047 DvMF_3101 Desulfovibrio vulgaris str. 'Miyazaki F' 3-oxoacyl-(acyl-carrier-protein) synthase III YP_002437506.1 3913751 R 883 CDS YP_002437507.1 218888186 7175048 complement(3914898..3915938) 1 NC_011769.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 3915938 7175048 DvMF_3102 Desulfovibrio vulgaris str. 'Miyazaki F' glycerol-3-phosphate acyltransferase PlsX YP_002437507.1 3914898 R 883 CDS YP_002437508.1 218888187 7175049 complement(3915931..3916110) 1 NC_011769.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 3916110 rpmF 7175049 rpmF Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L32 YP_002437508.1 3915931 R 883 CDS YP_002437509.1 218888188 7175050 complement(3916156..3916767) 1 NC_011769.1 PFAM: protein of unknown function DUF177; KEGG: dde:Dde_2426 hypothetical protein; hypothetical protein 3916767 7175050 DvMF_3104 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437509.1 3916156 R 883 CDS YP_002437510.1 218888189 7175051 3917009..3917218 1 NC_011769.1 required for 70S ribosome assembly; 50S ribosomal protein L28 3917218 rpmB 7175051 rpmB Desulfovibrio vulgaris str. 'Miyazaki F' 50S ribosomal protein L28 YP_002437510.1 3917009 D 883 CDS YP_002437511.1 218888190 7175052 3917366..3918346 1 NC_011769.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_2424 hypothetical protein; hypothetical protein 3918346 7175052 DvMF_3106 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437511.1 3917366 D 883 CDS YP_002437512.1 218888191 7175053 3918679..3919440 1 NC_011769.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: dde:Dde_2422 FxsA protein; FxsA cytoplasmic membrane protein 3919440 7175053 DvMF_3107 Desulfovibrio vulgaris str. 'Miyazaki F' FxsA cytoplasmic membrane protein YP_002437512.1 3918679 D 883 CDS YP_002437513.1 218888192 7175054 3919575..3920606 1 NC_011769.1 PFAM: rhomboid family protein; KEGG: dde:Dde_2421 rhomboid family protein; rhomboid family protein 3920606 7175054 DvMF_3108 Desulfovibrio vulgaris str. 'Miyazaki F' rhomboid family protein YP_002437513.1 3919575 D 883 CDS YP_002437514.1 218888193 7175055 complement(3920751..3922748) 1 NC_011769.1 KEGG: dde:Dde_2420 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; dolichyl-phosphate-mannose-protein mannosyltransferase family protein 3922748 7175055 DvMF_3109 Desulfovibrio vulgaris str. 'Miyazaki F' dolichyl-phosphate-mannose-protein mannosyltransferase family protein YP_002437514.1 3920751 R 883 CDS YP_002437515.1 218888194 7175057 3923820..3925289 1 NC_011769.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2418 MATE efflux family protein; MATE efflux family protein 3925289 7175057 DvMF_3111 Desulfovibrio vulgaris str. 'Miyazaki F' MATE efflux family protein YP_002437515.1 3923820 D 883 CDS YP_002437516.1 218888195 7175058 complement(3925482..3925784) 1 NC_011769.1 PFAM: protein of unknown function DUF77; KEGG: mgm:Mmc1_2182 protein of unknown function DUF77; hypothetical protein 3925784 7175058 DvMF_3112 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437516.1 3925482 R 883 CDS YP_002437517.1 218888196 7175059 complement(3925819..3927588) 1 NC_011769.1 PFAM: protein of unknown function DUF115; KEGG: dde:Dde_2415 hypothetical protein; hypothetical protein 3927588 7175059 DvMF_3113 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437517.1 3925819 R 883 CDS YP_002437518.1 218888197 7175060 complement(3927746..3930994) 1 NC_011769.1 KEGG: dde:Dde_2414 hypothetical protein; hypothetical protein 3930994 7175060 DvMF_3114 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437518.1 3927746 R 883 CDS YP_002437519.1 218888198 7175061 3931153..3931977 1 NC_011769.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2413 nitroreductase family protein; nitroreductase 3931977 7175061 DvMF_3115 Desulfovibrio vulgaris str. 'Miyazaki F' nitroreductase YP_002437519.1 3931153 D 883 CDS YP_002437520.1 218888199 7175062 complement(3932496..3934916) 1 NC_011769.1 TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 3934916 7175062 DvMF_3116 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Cache sensor YP_002437520.1 3932496 R 883 CDS YP_002437521.1 218888200 7175063 3935084..3935626 1 NC_011769.1 KEGG: dde:Dde_2410 hypothetical protein; hypothetical protein 3935626 7175063 DvMF_3117 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437521.1 3935084 D 883 CDS YP_002437522.1 218888201 7175064 complement(3935630..3937249) 1 NC_011769.1 PFAM: gamma-glutamyltranspeptidase; KEGG: xcb:XC_0301 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 3937249 7175064 DvMF_3118 Desulfovibrio vulgaris str. 'Miyazaki F' gamma-glutamyltransferase YP_002437522.1 3935630 R 883 CDS YP_002437523.1 218888202 7175065 complement(3937450..3939222) 1 NC_011769.1 PFAM: protein of unknown function DUF181; KEGG: dde:Dde_2408 hypothetical protein; hypothetical protein 3939222 7175065 DvMF_3119 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437523.1 3937450 R 883 CDS YP_002437524.1 218888203 7175066 complement(3940279..3941010) 1 NC_011769.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3941010 7175066 DvMF_3120 Desulfovibrio vulgaris str. 'Miyazaki F' 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_002437524.1 3940279 R 883 CDS YP_002437525.1 218888204 7175067 complement(3941007..3941678) 1 NC_011769.1 KEGG: dde:Dde_1466 lipoprotein; lipoprotein 3941678 7175067 DvMF_3121 Desulfovibrio vulgaris str. 'Miyazaki F' lipoprotein YP_002437525.1 3941007 R 883 CDS YP_002437526.1 218888205 7175068 complement(3941678..3942268) 1 NC_011769.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dde:Dde_1467 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 3942268 7175068 DvMF_3122 Desulfovibrio vulgaris str. 'Miyazaki F' imidazoleglycerol-phosphate dehydratase YP_002437526.1 3941678 R 883 CDS YP_002437527.1 218888206 7175069 complement(3942329..3943123) 1 NC_011769.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dde:Dde_1468 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 3943123 7175069 DvMF_3123 Desulfovibrio vulgaris str. 'Miyazaki F' Sec-independent protein translocase subunit TatC YP_002437527.1 3942329 R 883 CDS YP_002437528.1 218888207 7175070 complement(3943810..3944100) 1 NC_011769.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dde:Dde_1469 twin-arginine translocation protein TatB; twin-arginine translocation protein TatB 3944100 7175070 DvMF_3124 Desulfovibrio vulgaris str. 'Miyazaki F' twin-arginine translocation protein TatB YP_002437528.1 3943810 R 883 CDS YP_002437529.1 218888208 7175071 complement(3944298..3945845) 1 NC_011769.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 3945845 guaA 7175071 guaA Desulfovibrio vulgaris str. 'Miyazaki F' GMP synthase YP_002437529.1 3944298 R 883 CDS YP_002437530.1 218888209 7175072 complement(3946094..3947554) 1 NC_011769.1 KEGG: dde:Dde_1471 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 3947554 7175072 DvMF_3126 Desulfovibrio vulgaris str. 'Miyazaki F' inosine-5'-monophosphate dehydrogenase YP_002437530.1 3946094 R 883 CDS YP_002437531.1 218888210 7175073 complement(3947915..3948535) 1 NC_011769.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1473 hypothetical protein; hypothetical protein 3948535 7175073 DvMF_3127 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437531.1 3947915 R 883 CDS YP_002437532.1 218888211 7175074 complement(3948525..3948665) 1 NC_011769.1 hypothetical protein 3948665 7175074 DvMF_3128 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437532.1 3948525 R 883 CDS YP_002437533.1 218888212 7175075 complement(3948695..3949381) 1 NC_011769.1 PFAM: cytochrome C assembly protein; KEGG: dde:Dde_1474 cytochrome C biogenesis protein CcmC; cytochrome C assembly protein 3949381 7175075 DvMF_3129 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C assembly protein YP_002437533.1 3948695 R 883 CDS YP_002437534.1 218888213 7175076 complement(3949465..3950142) 1 NC_011769.1 PFAM: cytochrome C biogenesis protein CcmB; KEGG: dde:Dde_1475 cytochrome C biogenesis protein CcmB; cytochrome C biogenesis protein CcmB 3950142 7175076 DvMF_3130 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C biogenesis protein CcmB YP_002437534.1 3949465 R 883 CDS YP_002437535.1 218888214 7175077 complement(3950136..3950795) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1476 ATPase; ABC transporter 3950795 7175077 DvMF_3131 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437535.1 3950136 R 883 CDS YP_002437536.1 218888215 7175078 complement(3950795..3952720) 1 NC_011769.1 PFAM: cytochrome C assembly protein; KEGG: dde:Dde_1477 cytochrome C biogenesis protein CcmF; cytochrome C assembly protein 3952720 7175078 DvMF_3132 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C assembly protein YP_002437536.1 3950795 R 883 CDS YP_002437537.1 218888216 7175079 complement(3952938..3953360) 1 NC_011769.1 KEGG: dde:Dde_1478 cytochrome C biogenesis protein CcmE; cytochrome C biogenesis protein CcmE 3953360 7175079 DvMF_3133 Desulfovibrio vulgaris str. 'Miyazaki F' cytochrome C biogenesis protein CcmE YP_002437537.1 3952938 R 883 CDS YP_002437538.1 218888217 7175080 complement(3953875..3954912) 1 NC_011769.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: dde:Dde_1479 CBS; hypothetical protein 3954912 7175080 DvMF_3134 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437538.1 3953875 R 883 CDS YP_002437539.1 218888218 7175081 3955170..3955871 1 NC_011769.1 TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dde:Dde_1481 HAD family hydrolase; histidinol-phosphate phosphatase 3955871 7175081 DvMF_3135 Desulfovibrio vulgaris str. 'Miyazaki F' histidinol-phosphate phosphatase YP_002437539.1 3955170 D 883 CDS YP_002437540.1 218888219 7175082 3955868..3956902 1 NC_011769.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1482 heptosyltransferase family protein; lipopolysaccharide heptosyltransferase II 3956902 7175082 DvMF_3136 Desulfovibrio vulgaris str. 'Miyazaki F' lipopolysaccharide heptosyltransferase II YP_002437540.1 3955868 D 883 CDS YP_002437541.1 218888220 7175083 complement(3957156..3957989) 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dps:DP0756 ABC transporter ATP-binding protein; ABC transporter 3957989 7175083 DvMF_3137 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437541.1 3957156 R 883 CDS YP_002437542.1 218888221 7175084 complement(3957986..3958783) 1 NC_011769.1 TIGRFAM: cobalt ABC transporter inner membrane protein CbiQ; PFAM: cobalt transporter; KEGG: dde:Dde_1192 cobalt ABC transporter permease; cobalt ABC transporter inner membrane protein CbiQ 3958783 7175084 DvMF_3138 Desulfovibrio vulgaris str. 'Miyazaki F' cobalt ABC transporter inner membrane protein CbiQ YP_002437542.1 3957986 R 883 CDS YP_002437543.1 218888222 7175085 complement(3958790..3959404) 1 NC_011769.1 catalyzes the ATP-dependent transport of cobalt; cobalt transporter CbiM 3959404 7175085 DvMF_3139 Desulfovibrio vulgaris str. 'Miyazaki F' cobalt transporter CbiM YP_002437543.1 3958790 R 883 CDS YP_002437544.1 218888223 7175086 complement(3959740..3961173) 1 NC_011769.1 PFAM: citrate transporter; KEGG: dde:Dde_1483 hypothetical protein; citrate transporter 3961173 7175086 DvMF_3140 Desulfovibrio vulgaris str. 'Miyazaki F' citrate transporter YP_002437544.1 3959740 R 883 CDS YP_002437545.1 218888224 7175087 3961647..3962210 1 NC_011769.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1484 tRNA (guanosine-2'-O-)-methyltransferase; tRNA guanosine-2'-O-methyltransferase 3962210 7175087 DvMF_3141 Desulfovibrio vulgaris str. 'Miyazaki F' tRNA guanosine-2'-O-methyltransferase YP_002437545.1 3961647 D 883 CDS YP_002437546.1 218888225 7175088 complement(3962380..3963672) 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1485 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 3963672 7175088 DvMF_3142 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002437546.1 3962380 R 883 CDS YP_002437547.1 218888226 7175089 complement(3963731..3965530) 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1486 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 3965530 7175089 DvMF_3143 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002437547.1 3963731 R 883 CDS YP_002437548.1 218888227 7175090 3965662..3967359 1 NC_011769.1 PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1487 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 3967359 7175090 DvMF_3144 Desulfovibrio vulgaris str. 'Miyazaki F' family 2 glycosyl transferase YP_002437548.1 3965662 D 883 CDS YP_002437549.1 218888228 7175091 complement(3967683..3969020) 1 NC_011769.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 3969020 7175091 DvMF_3145 Desulfovibrio vulgaris str. 'Miyazaki F' tRNA (uracil-5-)-methyltransferase Gid YP_002437549.1 3967683 R 883 CDS YP_002437550.1 218888229 7175092 complement(3969273..3970139) 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1423 polar amino acid transporter substrate-binding proetin; family 3 extracellular solute-binding protein 3970139 7175092 DvMF_3146 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002437550.1 3969273 R 883 CDS YP_002437551.1 218888230 7175093 complement(3970413..3972983) 1 NC_011769.1 KEGG: dde:Dde_1424 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase 3972983 7175093 DvMF_3147 Desulfovibrio vulgaris str. 'Miyazaki F' alpha-glucan phosphorylase YP_002437551.1 3970413 R 883 CDS YP_002437552.1 218888231 7175094 3973132..3973641 1 NC_011769.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: dde:Dde_1425 deoxyuridine 5'-triphosphate nucleotidohydrolase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 3973641 7175094 DvMF_3148 Desulfovibrio vulgaris str. 'Miyazaki F' deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_002437552.1 3973132 D 883 CDS YP_002437553.1 218888232 7175095 3973734..3974942 1 NC_011769.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 3974942 7175095 DvMF_3149 Desulfovibrio vulgaris str. 'Miyazaki F' acetylornithine aminotransferase YP_002437553.1 3973734 D 883 CDS YP_002437554.1 218888233 7175096 3975206..3975556 1 NC_011769.1 KEGG: dde:Dde_1427 hypothetical protein; hypothetical protein 3975556 7175096 DvMF_3150 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437554.1 3975206 D 883 CDS YP_002437555.1 218888234 7175097 3976116..3976844 1 NC_011769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1428 ATPase; ABC transporter 3976844 7175097 DvMF_3151 Desulfovibrio vulgaris str. 'Miyazaki F' ABC transporter YP_002437555.1 3976116 D 883 CDS YP_002437556.1 218888235 7175098 3977022..3977837 1 NC_011769.1 PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1429 extracellular solute-binding protein; family 3 extracellular solute-binding protein 3977837 7175098 DvMF_3152 Desulfovibrio vulgaris str. 'Miyazaki F' family 3 extracellular solute-binding protein YP_002437556.1 3977022 D 883 CDS YP_002437557.1 218888236 7175099 3977905..3978606 1 NC_011769.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_1430 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 3978606 7175099 DvMF_3153 Desulfovibrio vulgaris str. 'Miyazaki F' polar amino acid ABC transporter inner membrane protein YP_002437557.1 3977905 D 883 CDS YP_002437558.1 218888237 7175100 3978723..3979412 1 NC_011769.1 TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_1431 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 3979412 7175100 DvMF_3154 Desulfovibrio vulgaris str. 'Miyazaki F' polar amino acid ABC transporter inner membrane protein YP_002437558.1 3978723 D 883 CDS YP_002437559.1 218888238 7175101 3979417..3980277 1 NC_011769.1 PFAM: ribosomal L11 methyltransferase; KEGG: dde:Dde_1432 50S ribosomal protein L11P methyltransferase; ribosomal L11 methyltransferase 3980277 7175101 DvMF_3155 Desulfovibrio vulgaris str. 'Miyazaki F' ribosomal L11 methyltransferase YP_002437559.1 3979417 D 883 CDS YP_002437560.1 218888239 7175102 3980666..3981337 1 NC_011769.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: dde:Dde_1435 DNA-3-methyladenine glycosylase III; HhH-GPD family protein 3981337 7175102 DvMF_3156 Desulfovibrio vulgaris str. 'Miyazaki F' HhH-GPD family protein YP_002437560.1 3980666 D 883 CDS YP_002437561.1 218888240 7175103 3981341..3982717 1 NC_011769.1 PFAM: peptidase M23; KEGG: dde:Dde_1436 M24/M37 family peptidase; peptidase M23 3982717 7175103 DvMF_3157 Desulfovibrio vulgaris str. 'Miyazaki F' peptidase M23 YP_002437561.1 3981341 D 883 CDS YP_002437562.1 218888241 7175104 3982747..3984048 1 NC_011769.1 KEGG: dde:Dde_1437 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 3984048 7175104 DvMF_3158 Desulfovibrio vulgaris str. 'Miyazaki F' carboxyl-terminal protease YP_002437562.1 3982747 D 883 CDS YP_002437563.1 218888242 7175105 3984270..3985901 1 NC_011769.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: dde:Dde_1438 hypothetical protein; hypothetical protein 3985901 7175105 DvMF_3159 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437563.1 3984270 D 883 CDS YP_002437564.1 218888243 7175106 3986241..3986660 1 NC_011769.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 3986660 ndk 7175106 ndk Desulfovibrio vulgaris str. 'Miyazaki F' nucleoside diphosphate kinase YP_002437564.1 3986241 D 883 CDS YP_002437565.1 218888244 7175107 3986665..3987474 1 NC_011769.1 KEGG: dde:Dde_1440 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; pyrroline-5-carboxylate reductase 3987474 7175107 DvMF_3161 Desulfovibrio vulgaris str. 'Miyazaki F' pyrroline-5-carboxylate reductase YP_002437565.1 3986665 D 883 CDS YP_002437566.1 218888245 7175108 complement(3987613..3988965) 1 NC_011769.1 PFAM: Smr protein/MutS2; KEGG: dde:Dde_1441 Smr protein/MutS2-like; Smr protein/MutS2 3988965 7175108 DvMF_3162 Desulfovibrio vulgaris str. 'Miyazaki F' Smr protein/MutS2 YP_002437566.1 3987613 R 883 CDS YP_002437567.1 218888246 7175109 3989316..3990323 1 NC_011769.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: dde:Dde_1442 signal peptide peptidase A; signal peptide peptidase SppA, 36K type 3990323 7175109 DvMF_3163 Desulfovibrio vulgaris str. 'Miyazaki F' signal peptide peptidase SppA, 36K type YP_002437567.1 3989316 D 883 CDS YP_002437568.1 218888247 7175110 complement(3990563..3991516) 1 NC_011769.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_1306 hypothetical protein; cobyrinic acid ac-diamide synthase 3991516 7175110 DvMF_3164 Desulfovibrio vulgaris str. 'Miyazaki F' cobyrinic acid ac-diamide synthase YP_002437568.1 3990563 R 883 CDS YP_002437569.1 218888248 7175111 complement(3991789..3992445) 1 NC_011769.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dde:Dde_1307 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 3992445 7175111 DvMF_3165 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase nickel incorporation protein HypB YP_002437569.1 3991789 R 883 CDS YP_002437570.1 218888249 7175112 complement(3992456..3992800) 1 NC_011769.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: dde:Dde_1308 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 3992800 7175112 DvMF_3166 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase nickel incorporation protein HypA YP_002437570.1 3992456 R 883 CDS YP_002437571.1 218888250 7175113 3993259..3994143 1 NC_011769.1 PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1309 TPR domain-containing protein; hypothetical protein 3994143 7175113 DvMF_3167 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437571.1 3993259 D 883 CDS YP_002437572.1 218888251 7175114 3994159..3995073 1 NC_011769.1 KEGG: dde:Dde_1310 hypothetical protein; hypothetical protein 3995073 7175114 DvMF_3168 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437572.1 3994159 D 883 CDS YP_002437573.1 218888252 7175115 complement(3995369..3995566) 1 NC_011769.1 PFAM: Heavy metal transport/detoxification protein; KEGG: dde:Dde_1312 mercuric transporter periplasmic component; heavy metal transport/detoxification protein 3995566 7175115 DvMF_3169 Desulfovibrio vulgaris str. 'Miyazaki F' heavy metal transport/detoxification protein YP_002437573.1 3995369 R 883 CDS YP_002437574.1 218888253 7175116 3995779..3998589 1 NC_011769.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; ATPase P; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dde:Dde_1313 heavy metal translocating P-type ATPase; ATPase P 3998589 7175116 DvMF_3170 Desulfovibrio vulgaris str. 'Miyazaki F' ATPase P YP_002437574.1 3995779 D 883 CDS YP_002437575.1 218888254 7175117 complement(3998793..3999215) 1 NC_011769.1 KEGG: dde:Dde_1314 hypothetical protein; hypothetical protein 3999215 7175117 DvMF_3171 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437575.1 3998793 R 883 CDS YP_002437576.1 218888255 7175118 complement(3999603..4001006) 1 NC_011769.1 PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: dde:Dde_1315 UTP--glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase 4001006 7175118 DvMF_3172 Desulfovibrio vulgaris str. 'Miyazaki F' UTP--glucose-1-phosphate uridylyltransferase YP_002437576.1 3999603 R 883 CDS YP_002437577.1 218888256 7175119 complement(4001377..4003251) 1 NC_011769.1 PFAM: carboxylyase-related protein; KEGG: dde:Dde_1323 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein; carboxylyase-related protein 4003251 7175119 DvMF_3173 Desulfovibrio vulgaris str. 'Miyazaki F' carboxylyase-related protein YP_002437577.1 4001377 R 883 CDS YP_002437578.1 218888257 7175120 complement(4003669..4004508) 1 NC_011769.1 PFAM: transcriptional regulator; KEGG: mca:MCA2330 DNA-binding response regulator; two component transcriptional regulator, winged helix family 4004508 7175120 DvMF_3174 Desulfovibrio vulgaris str. 'Miyazaki F' two component transcriptional regulator, winged helix family YP_002437578.1 4003669 R 883 CDS YP_002437579.1 218888258 7175121 complement(4004729..4005223) 1 NC_011769.1 PFAM: rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_1320 rubrerythrin; rubrerythrin 4005223 7175121 DvMF_3175 Desulfovibrio vulgaris str. 'Miyazaki F' rubrerythrin YP_002437579.1 4004729 R 883 CDS YP_002437580.1 218888259 7175122 complement(4005518..4008139) 1 NC_011769.1 KEGG: dde:Dde_1318 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase III 4008139 7175122 DvMF_3176 Desulfovibrio vulgaris str. 'Miyazaki F' DNA topoisomerase III YP_002437580.1 4005518 R 883 CDS YP_002437581.1 218888260 7175123 4008335..4009159 1 NC_011769.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: dde:Dde_1317 hypothetical protein; hypothetical protein 4009159 7175123 DvMF_3177 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437581.1 4008335 D 883 CDS YP_002437582.1 218888261 7175124 complement(4009263..4010000) 1 NC_011769.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: dde:Dde_1324 6-phosphogluconolactonase; 6-phosphogluconolactonase 4010000 7175124 DvMF_3178 Desulfovibrio vulgaris str. 'Miyazaki F' 6-phosphogluconolactonase YP_002437582.1 4009263 R 883 CDS YP_002437583.1 218888262 7175125 complement(4010294..4010773) 1 NC_011769.1 PFAM: OsmC family protein; KEGG: cte:CT0949 hypothetical protein; OsmC family protein 4010773 7175125 DvMF_3179 Desulfovibrio vulgaris str. 'Miyazaki F' OsmC family protein YP_002437583.1 4010294 R 883 CDS YP_002437584.1 218888263 7175126 complement(4010942..4011688) 1 NC_011769.1 PFAM: beta-lactamase; KEGG: dde:Dde_1331 metallo-beta-lactamase family protein; beta-lactamase 4011688 7175126 DvMF_3180 Desulfovibrio vulgaris str. 'Miyazaki F' beta-lactamase YP_002437584.1 4010942 R 883 CDS YP_002437585.1 218888264 7175127 complement(4012023..4014119) 1 NC_011769.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_3020 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 4014119 7175127 DvMF_3181 Desulfovibrio vulgaris str. 'Miyazaki F' methyl-accepting chemotaxis sensory transducer with Cache sensor YP_002437585.1 4012023 R 883 CDS YP_002437586.1 218888265 7175128 4014527..4015042 1 NC_011769.1 PFAM: conserved hypothetical protein; KEGG: cts:Ctha_1725 hypothetical protein; hypothetical protein 4015042 7175128 DvMF_3182 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437586.1 4014527 D 883 CDS YP_002437587.1 218888266 7175129 4015320..4015544 1 NC_011769.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: dde:Dde_2519 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 4015544 7175129 DvMF_3183 Desulfovibrio vulgaris str. 'Miyazaki F' TraR/DksA family transcriptional regulator YP_002437587.1 4015320 D 883 CDS YP_002437588.1 218888267 7175130 4015847..4016251 1 NC_011769.1 PFAM: cupin; KEGG: mes:Meso_2098 transcriptional regulator; cupin 4016251 7175130 DvMF_3184 Desulfovibrio vulgaris str. 'Miyazaki F' cupin YP_002437588.1 4015847 D 883 CDS YP_002437589.1 218888268 7175131 complement(4016345..4017355) 1 NC_011769.1 PFAM: phosphate transporter; KEGG: lip:LI0811 phosphate/sulfate permeases; phosphate transporter 4017355 7175131 DvMF_3185 Desulfovibrio vulgaris str. 'Miyazaki F' phosphate transporter YP_002437589.1 4016345 R 883 CDS YP_002437590.1 218888269 7175132 complement(4017348..4017977) 1 NC_011769.1 PFAM: protein of unknown function DUF47; KEGG: sfu:Sfum_2274 protein of unknown function DUF47; hypothetical protein 4017977 7175132 DvMF_3186 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437590.1 4017348 R 883 CDS YP_002437591.1 218888270 7175133 complement(4018511..4019044) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rru:Rru_A1426 4Fe-4S ferredoxin iron-sulfur binding; 4Fe-4S ferredoxin 4019044 7175133 DvMF_3187 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002437591.1 4018511 R 883 CDS YP_002437592.1 218888271 7175134 complement(4019049..4019435) 1 NC_011769.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: gbm:Gbem_0070 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 4019435 7175134 DvMF_3188 Desulfovibrio vulgaris str. 'Miyazaki F' hydrogenase nickel incorporation protein HypA YP_002437592.1 4019049 R 883 CDS YP_002437593.1 218888272 7175135 complement(4019464..4020597) 1 NC_011769.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: chy:CHY_1827 carbon monoxide-induced hydrogenase, large subunit; NADH dehydrogenase (quinone) 4020597 7175135 DvMF_3189 Desulfovibrio vulgaris str. 'Miyazaki F' NADH dehydrogenase (quinone) YP_002437593.1 4019464 R 883 CDS YP_002437594.1 218888273 7175136 complement(4020594..4021241) 1 NC_011769.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: chy:CHY_1828 carbon monoxide-induced hydrogenase, CooU subunit; NADH dehydrogenase (ubiquinone) 30 kDa subunit 4021241 7175136 DvMF_3190 Desulfovibrio vulgaris str. 'Miyazaki F' NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_002437594.1 4020594 R 883 CDS YP_002437595.1 218888274 7175137 complement(4021210..4021899) 1 NC_011769.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_1829 carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit; 4Fe-4S ferredoxin 4021899 7175137 DvMF_3191 Desulfovibrio vulgaris str. 'Miyazaki F' 4Fe-4S ferredoxin YP_002437595.1 4021210 R 883 CDS YP_002437596.1 218888275 7175138 complement(4021903..4022343) 1 NC_011769.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rru:Rru_A1422 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 4022343 7175138 DvMF_3192 Desulfovibrio vulgaris str. 'Miyazaki F' NADH ubiquinone oxidoreductase 20 kDa subunit YP_002437596.1 4021903 R 883 CDS YP_002437597.1 218888276 7175139 complement(4022360..4023358) 1 NC_011769.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: chy:CHY_1831 carbon monoxide-induced hydrogenase, CooK subunit; respiratory-chain NADH dehydrogenase subunit 1 4023358 7175139 DvMF_3193 Desulfovibrio vulgaris str. 'Miyazaki F' respiratory-chain NADH dehydrogenase subunit 1 YP_002437597.1 4022360 R 883 CDS YP_002437598.1 218888277 7175140 complement(4023362..4027156) 1 NC_011769.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: chy:CHY_1832 carbon monoxide-induced hydrogenase, membrane anchor subunit; NADH dehydrogenase (quinone) 4027156 7175140 DvMF_3194 Desulfovibrio vulgaris str. 'Miyazaki F' NADH dehydrogenase (quinone) YP_002437598.1 4023362 R 883 CDS YP_002437599.1 218888278 7175141 complement(4027722..4028090) 1 NC_011769.1 PFAM: small multidrug resistance protein; KEGG: nha:Nham_1679 small multidrug resistance protein; small multidrug resistance protein 4028090 7175141 DvMF_3195 Desulfovibrio vulgaris str. 'Miyazaki F' small multidrug resistance protein YP_002437599.1 4027722 R 883 CDS YP_002437600.1 218888279 7175142 4028328..4029296 1 NC_011769.1 KEGG: dde:Dde_3620 amino acid ABC transporter periplasmic protein; hypothetical protein 4029296 7175142 DvMF_3196 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437600.1 4028328 D 883 CDS YP_002437601.1 218888280 7175143 4029345..4029689 1 NC_011769.1 PFAM: Domain of unknown function DUF1791; KEGG: dde:Dde_2602 hypothetical protein; hypothetical protein 4029689 7175143 DvMF_3197 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437601.1 4029345 D 883 CDS YP_002437602.1 218888281 7175144 4029816..4030352 1 NC_011769.1 KEGG: dde:Dde_2445 hypothetical protein; hypothetical protein 4030352 7175144 DvMF_3198 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437602.1 4029816 D 883 CDS YP_002437603.1 218888282 7175146 complement(4030654..4032516) 1 NC_011769.1 KEGG: dde:Dde_2327 hypothetical protein; hypothetical protein 4032516 7175146 DvMF_3199 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437603.1 4030654 R 883 CDS YP_002437604.1 218888283 7175147 4032571..4033176 1 NC_011769.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dde:Dde_2326 ribosomal RNA large subunit methyltransferase J; ribosomal RNA methyltransferase RrmJ/FtsJ 4033176 7175147 DvMF_3200 Desulfovibrio vulgaris str. 'Miyazaki F' ribosomal RNA methyltransferase RrmJ/FtsJ YP_002437604.1 4032571 D 883 CDS YP_002437605.1 218888284 7175148 4033283..4034026 1 NC_011769.1 PFAM: protein of unknown function DUF28; KEGG: dde:Dde_2325 hypothetical protein; hypothetical protein 4034026 7175148 DvMF_3201 Desulfovibrio vulgaris str. 'Miyazaki F' hypothetical protein YP_002437605.1 4033283 D 883 CDS YP_002437606.1 218888285 7175149 4034295..4034888 1 NC_011769.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 4034888 ruvC 7175149 ruvC Desulfovibrio vulgaris str. 'Miyazaki F' Holliday junction resolvase YP_002437606.1 4034295 D 883 CDS YP_002437607.1 218888286 7175150 complement(4035220..4036929) 1 NC_011769.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb3563 C4-dicarboxylate transport sensor protein DctB; diguanylate cyclase 4036929 7175150 DvMF_3203 Desulfovibrio vulgaris str. 'Miyazaki F' diguanylate cyclase YP_002437607.1 4035220 R 883 CDS YP_002437608.1 218888287 7175151 4037171..4037779 1 NC_011769.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 4037779 ruvA 7175151 ruvA Desulfovibrio vulgaris str. 'Miyazaki F' Holliday junction DNA helicase RuvA YP_002437608.1 4037171 D 883 CDS YP_002437609.1 218888288 7175152 4037779..4038783 1 NC_011769.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 4038783 ruvB 7175152 ruvB Desulfovibrio vulgaris str. 'Miyazaki F' Holliday junction DNA helicase RuvB YP_002437609.1 4037779 D 883 CDS YP_002437610.1 218888289 7175153 4039006..4039737 1 NC_011769.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 4039737 thyX 7175153 thyX Desulfovibrio vulgaris str. 'Miyazaki F' FAD-dependent thymidylate synthase YP_002437610.1 4039006 D 883 CDS