-- dump date   	20120504_143452
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_002434431.1	KEGG: dde:Dde_2320 DnaA family protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase
YP_002434432.1	PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_2318 transcriptional regulator
YP_002434433.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2317 AMP-binding protein
YP_002434434.1	PFAM: hypothetical protein; protein of unknown function DUF181; hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_2348 hypothetical protein
YP_002434435.1	PFAM: methyltransferase small; KEGG: sfu:Sfum_0452 methyltransferase type 12
YP_002434436.1	KEGG: shw:Sputw3181_0818 GCN5-related N-acetyltransferase
YP_002434437.1	PFAM: protein of unknown function DUF302; KEGG: dde:Dde_3562 hypothetical protein
YP_002434438.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: dde:Dde_2345 TraR/DksA family transcriptional regulator
YP_002434439.1	PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: dde:Dde_2344 hypothetical protein
YP_002434440.1	PFAM: EAL domain protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2343 diguanylate phosphodiesterase
YP_002434441.1	PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: gvi:glr2358 L-serine dehydratase
YP_002434442.1	KEGG: dde:Dde_2342 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_002434443.1	KEGG: dde:Dde_2341 fructose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II
YP_002434444.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: glo:Glov_3394 pyruvate phosphate dikinase PEP/pyruvate-binding
YP_002434445.1	PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: glo:Glov_3393 peptidase C26
YP_002434446.1	KEGG: glo:Glov_3392 transferase
YP_002434447.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: wsu:WS2181 hypothetical protein
YP_002434448.1	PFAM: adenylylsulfate kinase; KEGG: pfo:PflO1_5510 adenylylsulfate kinase
YP_002434451.1	KEGG: dde:Dde_2340 exopolyphosphatase / 3'-nucleotidase / 5'-nucleotidase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE
YP_002434452.1	KEGG: dde:Dde_2339 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_002434453.1	PFAM: thymidylate kinase; KEGG: dde:Dde_2338 thymidylate kinase
YP_002434454.1	PFAM: histone deacetylase superfamily; KEGG: dde:Dde_2337 histone deacetylase family protein
YP_002434455.1	PFAM: protein of unknown function DUF1121; KEGG: dde:Dde_2335 hypothetical protein
YP_002434456.1	TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: CoA-binding protein; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: dde:Dde_2334 succinyl-CoA synthetase (ADP-forming) alpha subunit / succinyl-CoA synthetase (ADP-forming) subunit beta
YP_002434457.1	TIGRFAM: indolepyruvate/phenylpyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: dde:Dde_2331  phenylpyruvate decarboxylase
YP_002434458.1	KEGG: dde:Dde_1347 hypothetical protein
YP_002434459.1	KEGG: dame:34012.
YP_002434460.1	KEGG: rci:LRC585 hypothetical protein
YP_002434462.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: har:HEAR1631 hypothetical protein
YP_002434463.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_3923 outer membrane efflux protein
YP_002434464.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: sfu:Sfum_3921 efflux transporter RND family, MFP subunit
YP_002434465.1	TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_3922 transporter hydrophobe/amphiphile efflux-1 (HAE1) family
YP_002434466.1	KEGG: sat:SYN_02957 hypothetical membrane protein
YP_002434467.1	PFAM: protein of unknown function DUF140; KEGG: sat:SYN_02070 ABC transporter permease
YP_002434468.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_2415 ABC transporter
YP_002434469.1	PFAM: hypothetical protein; KEGG: dde:Dde_1983 hypothetical protein
YP_002434470.1	PFAM: protein of unknown function DUF330; KEGG: mca:MCA0364  lipoprotein
YP_002434471.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mca:MCA0504 GGDEF domain-containing protein
YP_002434472.1	KEGG: dde:Dde_2536 hypothetical protein
YP_002434473.1	PFAM: ApbE family lipoprotein; KEGG: dde:Dde_2535 hypothetical protein
YP_002434474.1	PFAM: endonuclease/exonuclease/phosphatase
YP_002434475.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_002434476.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_002434477.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_002434478.1	KEGG: cre:CHLREDRAFT_146629 hypothetical protein PROSITE: ALA_RICH
YP_002434479.1	PFAM: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1
YP_002434480.1	PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_1507 amino acid ABC transporter periplasmic protein
YP_002434481.1	KEGG: dde:Dde_3728 hypothetical protein
YP_002434482.1	KEGG: hch:HCH_03353 hypothetical protein
YP_002434484.1	KEGG: dde:Dde_1513 FtsH peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA
YP_002434485.1	KEGG: dde:Dde_1514 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS
YP_002434486.1	PFAM: protein of unknown function DUF147; KEGG: dde:Dde_1515 hypothetical protein
YP_002434487.1	PFAM: YbbR family protein; KEGG: dde:Dde_1516 hypothetical protein
YP_002434488.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_002434489.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: dde:Dde_1518 UDP-glucose pyrophosphorylase
YP_002434490.1	KEGG: dde:Dde_1519 replication restart DNA helicase PriA; TIGRFAM: primosomal protein N'; PFAM: helicase; type III restriction protein res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases
YP_002434491.1	KEGG: dde:Dde_1520 hypothetical protein
YP_002434492.1	PFAM: response regulator receiver; KEGG: dde:Dde_1521 response regulator receiver domain-containing protein
YP_002434493.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_1522 histidine kinase
YP_002434494.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation
YP_002434495.1	PFAM: polysulphide reductase NrfD; KEGG: dde:Dde_2275 reductase, transmembrane subunit
YP_002434496.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2274 reductase, iron-sulfur binding subunit
YP_002434497.1	KEGG: dde:Dde_2273 cytochrome C family protein
YP_002434498.1	KEGG: dde:Dde_2272 reductase, iron-sulfur binding subunit
YP_002434499.1	PFAM: nitrate reductase subunit gamma; KEGG: dde:Dde_2271 nitrate reductase, subunit gamma
YP_002434500.1	KEGG: dde:Dde_2270 hypothetical protein
YP_002434501.1	KEGG: dde:Dde_2268 hypothetical protein
YP_002434502.1	PFAM: protein of unknown function DUF45; KEGG: cpb:Cphamn1_1661 protein of unknown function DUF45
YP_002434503.1	KEGG: dde:Dde_2265 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase
YP_002434504.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_002434505.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_002434506.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002434507.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_002434508.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_002434509.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_002434510.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_002434511.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_002434512.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_002434513.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_002434514.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_002434515.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_002434516.1	one of the stabilizing components for the large ribosomal subunit
YP_002434517.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_002434518.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_002434519.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_002434520.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_002434521.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_002434522.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_002434523.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_002434524.1	binds 5S rRNA along with protein L5 and L25
YP_002434525.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_002434526.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_002434527.1	late assembly protein
YP_002434528.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_002434529.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dde:Dde_2236 methionine aminopeptidase, type I
YP_002434530.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_002434531.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_002434532.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_002434533.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_002434534.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_002434535.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_002434536.1	Contains selenocysteine; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dde:Dde_2225 selenophosphate synthase
YP_002434537.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dde:Dde_2226 LysR family transcriptional regulator
YP_002434538.1	TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: dde:Dde_2222 trigger factor
YP_002434539.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002434540.1	binds and unfolds substrates as part of the ClpXP protease
YP_002434541.1	KEGG: dde:Dde_2218 Lon-A peptidase; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA central domain protein; ATPase AAA; SMART: AAA ATPase
YP_002434542.1	KEGG: dde:Dde_2213 hypothetical protein
YP_002434544.1	KEGG: dde:Dde_2212 hypothetical protein
YP_002434545.1	PFAM: ferric-uptake regulator; KEGG: dde:Dde_2211 ferric uptake regulator family protein
YP_002434546.1	PFAM: ABC transporter; KEGG: dde:Dde_2210 cation ABC transporter permease
YP_002434547.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2209 ATPase
YP_002434548.1	PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter periplasmc-binding protein
YP_002434549.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_002434550.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_002434551.1	KEGG: dde:Dde_2204 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type
YP_002434552.1	PFAM: peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase
YP_002434553.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_002434554.1	PFAM: polyprenyl synthetase; KEGG: dde:Dde_2201 farnesyl-diphosphate synthase
YP_002434555.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_002434556.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer
YP_002434557.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins
YP_002434558.1	PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dde:Dde_2197 6-pyruvoyl tetrahydrobiopterin synthase
YP_002434559.1	KEGG: dde:Dde_2196 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein
YP_002434560.1	KEGG: dde:Dde_2194 hypothetical protein
YP_002434561.1	SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_2193 HD domain-containing protein
YP_002434562.1	PFAM: methyltransferase type 11; KEGG: dde:Dde_2191 hypothetical protein
YP_002434564.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfu:Sfum_3208 haloacid dehalogenase domain protein hydrolase
YP_002434565.1	KEGG: lip:LI0254 hypothetical protein
YP_002434566.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: dde:Dde_2187 UDP-galactose 4-epimerase
YP_002434567.1	KEGG: dde:Dde_2185 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19
YP_002434568.1	PFAM: nucleoside recognition domain protein; KEGG: dde:Dde_2184 hypothetical protein
YP_002434569.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_2183 dTDP-4-dehydrorhamnose reductase
YP_002434570.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_2182 dTDP-glucose 4,6-dehydratase
YP_002434571.1	PFAM: anaerobic cobalt chelatase; KEGG: dde:Dde_2181 heme-binding protein
YP_002434572.1	KEGG: dde:Dde_2178  lipoprotein
YP_002434573.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dde:Dde_2177 twin arginine-targeting protein translocase
YP_002434574.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: rhodanese; KEGG: dde:Dde_2176 rhodanese-like protein
YP_002434575.1	KEGG: dde:Dde_2175 hypothetical protein
YP_002434576.1	KEGG: dde:Dde_2174 hypothetical protein
YP_002434577.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: dde:Dde_2173 HAD family hydrolase
YP_002434578.1	PFAM: protein of unknown function YGGT; KEGG: lip:LI0363 predicted integral membrane protein
YP_002434579.1	PFAM: DivIVA family protein; KEGG: dde:Dde_2171 cell-division initiation protein DivIVA
YP_002434580.1	PFAM: protein of unknown function DUF167; KEGG: dde:Dde_2170 hypothetical protein
YP_002434581.1	KEGG: dde:Dde_2169 hypothetical protein
YP_002434582.1	KEGG: dde:Dde_2168 acetolactate synthase, large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein
YP_002434583.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_002434584.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_002434585.1	PFAM: NADPH-dependent FMN reductase; KEGG: pfl:PFL_3289 FMN reductase, NADPH-dependent
YP_002434586.1	KEGG: dde:Dde_2165 hypothetical protein
YP_002434587.1	KEGG: dde:Dde_2018 HesB-like domain-containing protein; Contains selenocysteine
YP_002434588.1	KEGG: dde:Dde_2018 HesB-like domain-containing protein
YP_002434589.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_002434590.1	KEGG: lip:LI0306 predicted integral membrane protein
YP_002434591.1	KEGG: gsu:GSU1966 hypothetical protein
YP_002434592.1	KEGG: mms:mma_3662 hypothetical protein
YP_002434593.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_0451 4Fe-4S ferredoxin iron-sulfur binding
YP_002434594.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mta:Moth_0450 formate dehydrogenase
YP_002434595.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gbm:Gbem_1735 twin-arginine translocation pathway signal
YP_002434597.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_1779 tRNA-adenosine deaminase
YP_002434598.1	PFAM: conserved hypothetical protein; KEGG: dde:Dde_1780 hypothetical protein
YP_002434599.1	PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1781 metallo-beta-lactamase family protein
YP_002434600.1	TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase KEGG: dde:Dde_1782 hypothetical protein
YP_002434601.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_002434602.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_002434603.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ppd:Ppro_1978 protein of unknown function DUF395, YeeE/YedE
YP_002434604.1	PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: glo:Glov_2970 protein of unknown function DUF395 YeeE/YedE
YP_002434605.1	PFAM: lytic transglycosylase catalytic; KEGG: dde:Dde_1786 membrane-bound lytic murein transglycosylase C
YP_002434606.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: dde:Dde_1787  lipoprotein
YP_002434607.1	KEGG: oan:Oant_2848 extracellular solute-binding protein family 3
YP_002434608.1	KEGG: ppw:PputW619_4145 hypothetical protein
YP_002434609.1	PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dde:Dde_1789 phosphoadenylylsulfate reductase (thioredoxin)
YP_002434610.1	KEGG: dde:Dde_1790 hypothetical protein
YP_002434611.1	PFAM: ferritin; KEGG: dde:Dde_1791 ferritin
YP_002434612.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1792 pyruvate ferredoxin oxidoreductase, subunit alpha
YP_002434613.1	TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_1793 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate
YP_002434614.1	KEGG: dde:Dde_1794 hypothetical protein
YP_002434615.1	KEGG: dde:Dde_1795 hypothetical protein
YP_002434616.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_002434617.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_002434620.1	KEGG: mag:amb1260 HrpA-like helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases
YP_002434621.1	KEGG: shw:Sputw3181_2461 lipoprotein
YP_002434622.1	PFAM: protein of unknown function DUF161; KEGG: mba:Mbar_A3450 uncharacterized membrane protein
YP_002434623.1	PFAM: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1
YP_002434624.1	TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; KEGG: dde:Dde_3769 translation initiation factor 1
YP_002434625.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0265 iron-sulfur cluster-binding protein
YP_002434627.1	PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: dde:Dde_1669 cob(I)yrinic acid a,c-diamide adenosyltransferase
YP_002434628.1	PFAM: radical SAM protein; KEGG: dde:Dde_1670 radical SAM domain-containing protein
YP_002434629.1	KEGG: dame:35054.
YP_002434630.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_002434631.1	PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1676 elongator protein 3/MiaB/NifB
YP_002434632.1	KEGG: dde:Dde_1677 hypothetical protein
YP_002434633.1	KEGG: dde:Dde_1678 hypothetical protein
YP_002434634.1	KEGG: dde:Dde_1679 hypothetical protein
YP_002434635.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_002434636.1	PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: dsy:DSY1020 hypothetical protein
YP_002434637.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_1681 D-isomer specific 2-hydroxyacid dehydrogenase family protein
YP_002434638.1	PFAM: extracellular ligand-binding receptor; KEGG: bja:blr6548 leucine/isoleucine/valine-binding protein precursor
YP_002434639.1	KEGG: mms:mma_2307 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002434640.1	KEGG: dde:Dde_1682 hypothetical protein
YP_002434641.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_1684 PAS/PAC sensor signal transduction histidine kinase
YP_002434642.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_1685 two component Fis family transcriptional regulator
YP_002434643.1	KEGG: mxa:MXAN_3234 hypothetical protein
YP_002434644.1	PFAM: Hpt domain protein; KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator
YP_002434645.1	KEGG: dde:Dde_1687 hypothetical protein
YP_002434646.1	PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: aae:aq_486 alkyl hydroperoxide reductase
YP_002434647.1	KEGG: dde:Dde_1688 hypothetical protein
YP_002434648.1	PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1689 OmpA family protein
YP_002434649.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_1690 dihydrolipoamide dehydrogenase
YP_002434650.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_002434651.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein
YP_002434652.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_002434653.1	PFAM: response regulator receiver; KEGG: dde:Dde_1694 response regulator receiver domain-containing protein
YP_002434654.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_002434655.1	KEGG: mja:MJ0986 hypothetical protein
YP_002434656.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: xcv:XCV1110 site-specific DNA-methyltransferase (cytosine-N(4)-specific)
YP_002434657.1	KEGG: cno:NT01CX_1426 hypothetical protein
YP_002434658.1	PFAM: ATPase associated with various cellular activities AAA_5; KEGG: cpf:CPF_0992 McrB domain protein
YP_002434659.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_002434660.1	PFAM: lysine exporter (LYSE/YGGA); KEGG: pst:PSPTO_3452 amino acid transporter LysE
YP_002434661.1	PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase
YP_002434662.1	PFAM: sulfate transporter/antisigma-factor antagonist STAS; Hpt domain protein; KEGG: dde:Dde_1700 chemotaxis protein CheA
YP_002434663.1	KEGG: dol:Dole_0216 hypothetical protein
YP_002434664.1	PFAM: radical SAM protein; beta tubulin, autoregulation binding site; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1701 elongator protein 3/MiaB/NifB
YP_002434665.1	KEGG: dde:Dde_1702 hypothetical protein
YP_002434666.1	PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1703 hypothetical protein
YP_002434667.1	PFAM: DRTGG domain protein; KEGG: dde:Dde_1705 cobyrinic acid a,c-diamide synthase family protein
YP_002434668.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_002434669.1	PFAM: flagellin domain protein; KEGG: dde:Dde_1709 flagellin
YP_002434670.1	KEGG: dde:Dde_1710 hypothetical protein
YP_002434671.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: dde:Dde_1711 flagellar hook protein FlgE
YP_002434672.1	PFAM: flagellar hook capping protein; KEGG: dde:Dde_1712 basal-body rod modification protein FlgD
YP_002434673.1	PFAM: flagellar hook-length control protein; KEGG: dde:Dde_1713 hypothetical protein
YP_002434674.1	PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1714 heptosyltransferase family protein
YP_002434675.1	KEGG: dde:Dde_1715 CgeB family protein
YP_002434676.1	PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein
YP_002434677.1	TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA
YP_002434678.1	KEGG: dde:Dde_1722  anti-sigma regulatory factor (serine/threonine protein kinase)
YP_002434679.1	PFAM: response regulator receiver; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: dde:Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase
YP_002434680.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); defense mechanism against a harmful effect of D-tyrosine
YP_002434681.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase
YP_002434682.1	TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: dde:Dde_1726 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_002434683.1	PFAM: protein of unknown function DUF164; KEGG: dde:Dde_1728 hypothetical protein
YP_002434684.1	PFAM: protein of unknown function DUF34; KEGG: dde:Dde_1729 hypothetical protein
YP_002434685.1	PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2151 thioredoxin reductase
YP_002434686.1	KEGG: dde:Dde_2148 chemotaxis protein CheZ
YP_002434687.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2146 iron-sulfur cluster-binding protein
YP_002434688.1	TIGRFAM: tol-pal system protein YbgF; PFAM: hypothetical protein; KEGG: lip:LI1053 hypothetical protein
YP_002434689.1	KEGG: sfu:Sfum_0159 hypothetical protein
YP_002434690.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_002434691.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_002434692.1	PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_2141 GDSL family lipase
YP_002434693.1	TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dde:Dde_2140 hydrogenase assembly chaperone HypC/HupF
YP_002434694.1	TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2139 hydrogenase expression/formation protein
YP_002434695.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2138 periplasmic (NiFe) hydrogenase, large subunit, isozyme 1
YP_002434696.1	KEGG: dde:Dde_2137 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_002434697.1	TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2136 peptidase M52, hydrogen uptake protein
YP_002434698.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing
YP_002434699.1	KEGG: dde:Dde_2134 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_002434700.1	TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: dde:Dde_2049 alpha-isopropylmalate/homocitrate synthase family transferase
YP_002434701.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_002434702.1	PFAM: protein of unknown function UPF0079; KEGG: dde:Dde_2047 hypothetical protein
YP_002434703.1	PFAM: CBS domain containing protein; KEGG: dde:Dde_2046 CBS
YP_002434704.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: dde:Dde_2045 hypothetical protein
YP_002434705.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_002434706.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_002434707.1	KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase
YP_002434708.1	KEGG: dde:Dde_2041 hypothetical protein
YP_002434709.1	PFAM: CheW domain protein; KEGG: dde:Dde_2040 CheW protein
YP_002434710.1	KEGG: dde:Dde_2039 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases
YP_002434711.1	KEGG: dde:Dde_2038 hypothetical protein
YP_002434712.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: lip:LI0303 parvulin-like peptidyl-prolyl isomerase
YP_002434713.1	SMART: helix-turn-helix domain protein; KEGG: dde:Dde_2036 XRE family transcriptional regulator
YP_002434714.1	PFAM: recombination protein O RecO; KEGG: dde:Dde_2035 DNA repair protein RecO
YP_002434715.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_002434716.1	KEGG: dde:Dde_2033 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase subunit beta
YP_002434717.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_002434718.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_002434719.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dde:Dde_2027 ketose-bisphosphate aldolase, class-II
YP_002434720.1	KEGG: dde:Dde_2026 hypothetical protein
YP_002434721.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_002434722.1	PFAM: cytochrome C assembly protein; KEGG: dde:Dde_2024 cytochrome C assembly protein
YP_002434723.1	TIGRFAM: siroheme synthase; KEGG: dde:Dde_2023 precorrin-2 dehydrogenase
YP_002434724.1	PFAM: glycosyl transferase family 9; KEGG: dde:Dde_2022 heptosyltransferase family protein
YP_002434725.1	KEGG: dde:Dde_2021 CgeB family protein
YP_002434726.1	PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein
YP_002434727.1	PFAM: domain of unknown function DUF1737; KEGG: mes:Meso_3267 hypothetical protein
YP_002434728.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer
YP_002434729.1	PFAM: Cache type 2 domain protein; KEGG: lch:Lcho_2364 cache type 2 domain protein
YP_002434730.1	KEGG: dde:Dde_3211 split soret cytochrome C precursor
YP_002434731.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_002434732.1	heat shock protein involved in degradation of misfolded proteins
YP_002434733.1	KEGG: dde:Dde_2013 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein
YP_002434734.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_002434735.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dde:Dde_2010 peptidyl-prolyl cis-trans isomerase C
YP_002434736.1	PFAM: heat shock protein Hsp20; KEGG: dde:Dde_2008 HSP20 family protein
YP_002434737.1	PFAM: peptidase S16; KEGG: dde:Dde_2007 ATP-dependent protease
YP_002434738.1	KEGG: dde:Dde_2006 hypothetical protein
YP_002434739.1	PFAM: protein of unknown function DUF485; KEGG: afw:Anae109_3835 protein of unknown function DUF485
YP_002434740.1	TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: afw:Anae109_3836 SSS sodium solute transporter superfamily
YP_002434741.1	PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase KEGG: aae:aq_2107 hypothetical protein
YP_002434742.1	PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase KEGG: cau:Caur_2724 protein of unknown function DUF294 nucleotidyltransferase
YP_002434743.1	PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: afw:Anae109_4029 exonuclease RNase T and DNA polymerase III
YP_002434744.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1075 iron-sulfur cluster-binding protein
YP_002434745.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dde:Dde_1076 thiosulfate reductase
YP_002434746.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3523 alcohol dehydrogenase, iron-containing
YP_002434747.1	KEGG: dde:Dde_1207 heterodisulfide reductase, C subunit
YP_002434748.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C
YP_002434749.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3526 heterodisulfide reductase, subunit alpha
YP_002434750.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase subunit delta; KEGG: dde:Dde_3528 hydrogenase, iron-sulfur cluster-binding subunit
YP_002434751.1	KEGG: dde:Dde_1212 hydrogenase
YP_002434752.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1213 hydrogenase
YP_002434753.1	KEGG: dde:Dde_1214 hypothetical protein
YP_002434754.1	KEGG: dde:Dde_3531 hypothetical protein
YP_002434755.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3534 alcohol dehydrogenase, iron-containing
YP_002434756.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_3535 histidine kinase
YP_002434757.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3536 two component Fis family transcriptional regulator
YP_002434758.1	PFAM: ADP-ribosylation/crystallin J1; KEGG: tcx:Tcr_1009 ADP-ribosylation/crystallin J1
YP_002434759.1	PFAM: glutamyl-tRNA synthetase class Ic; KEGG: sth:STH2668 glutamyl-tRNA synthetase
YP_002434760.1	KEGG: dde:Dde_2003 hypothetical protein
YP_002434761.1	PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator
YP_002434762.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: dde:Dde_2001 phospholipid/glycerol acyltransferase
YP_002434763.1	KEGG: dde:Dde_1999 glycosyl transferase, group 2 family protein
YP_002434764.1	PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: dde:Dde_1998 recombination factor protein RarA
YP_002434765.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_002434766.1	TIGRFAM: glycine cleavage system protein T; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: dde:Dde_1996 glycine cleavage system protein T
YP_002434767.1	KEGG: dde:Dde_1995 hypothetical protein
YP_002434768.1	PFAM: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein
YP_002434769.1	TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: dde:Dde_1993 rod shape-determining protein MreB
YP_002434770.1	PFAM: inositol monophosphatase; KEGG: dde:Dde_1992 inositol-1-monophosphatase
YP_002434771.1	PFAM: NUDIX hydrolase; KEGG: dde:Dde_1991 isopentenyl-diphosphate delta-isomerase
YP_002434772.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_1990 30S ribosomal protein S18P alanine acetyltransferase
YP_002434773.1	PFAM: triosephosphate isomerase; KEGG: dde:Dde_1989 triosephosphate isomerase
YP_002434774.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: lip:LI1131 preprotein translocase subunit SecG
YP_002434775.1	PFAM: extracellular solute-binding protein family 3; KEGG: vvy:VV1499 hypothetical protein
YP_002434776.1	KEGG: dde:Dde_1981 hypothetical protein
YP_002434777.1	PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dde:Dde_1980 transcriptional regulator
YP_002434778.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dde:Dde_1978 diaminopimelate decarboxylase
YP_002434779.1	KEGG: dde:Dde_1977  lipoprotein
YP_002434780.1	This protein performs the mismatch recognition step during the DNA repair process
YP_002434781.1	PFAM: hypothetical protein; KEGG: dde:Dde_1975 hypothetical protein
YP_002434782.1	PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein
YP_002434783.1	PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: dde:Dde_1972 CBS
YP_002434784.1	TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase; KEGG: dde:Dde_1971 tyrosine recombinase XerD subunit
YP_002434785.1	PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer
YP_002434786.1	catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis
YP_002434787.1	TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: lip:LI0240 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
YP_002434788.1	SMART: TRASH domain protein; KEGG: dde:Dde_1968 TRASH
YP_002434789.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_002434790.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: lip:LI0871 acyltransferase, HtrB/MsbB family
YP_002434791.1	PFAM: protein of unknown function DUF374; KEGG: dde:Dde_1961 hypothetical protein
YP_002434792.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_1960 lipid A export ATP-binding/permease MsbA
YP_002434793.1	KEGG: dde:Dde_1959 hypothetical protein
YP_002434794.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: dde:Dde_1958 pseudouridine synthase, Rsu
YP_002434795.1	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dde:Dde_1956 outer membrane lipoprotein carrier protein LolA
YP_002434796.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: dde:Dde_1955 FtsK/SpoIIIE family protein
YP_002434797.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_002434798.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_002434799.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_002434800.1	PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease
YP_002434801.1	PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease
YP_002434802.1	KEGG: sfu:Sfum_0324 hypothetical protein
YP_002434803.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002434804.1	PFAM: natural resistance-associated macrophage protein; KEGG: tpd:Teth39_1570 natural resistance-associated macrophage protein
YP_002434805.1	KEGG: dde:Dde_1072 hypothetical protein
YP_002434806.1	TIGRFAM: L-lactate transport; PFAM: L-lactate permease; citrate transporter; Na+/H+ antiporter NhaC; KEGG: dde:Dde_1074 L-lactate transport
YP_002434807.1	TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: dde:Dde_2385 phosphate uptake regulator, PhoU
YP_002434808.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_002434811.1	KEGG: dde:Dde_1940 hypothetical protein
YP_002434812.1	PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_06937 amino acid ABC transporter periplasmic protein
YP_002434813.1	KEGG: gsu:GSU1295 hypothetical protein
YP_002434814.1	PFAM: penicillin-binding protein transpeptidase; KEGG: rfe:RF_1275 beta-lactamase class D
YP_002434815.1	KEGG: dde:Dde_1847 hypothetical protein
YP_002434816.1	PFAM: carbonic anhydrase; KEGG: gsu:GSU2307 carbonic anhydrase
YP_002434817.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_3821 cache sensor hybrid histidine kinase
YP_002434818.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: aba:acid345_2245 cation diffusion facilitator family transporter
YP_002434819.1	PFAM: protein of unknown function DUF1653; KEGG: lch:Lcho_0448 protein of unknown function DUF1653
YP_002434820.1	PFAM: protein of unknown function DUF162; KEGG: rru:Rru_A1411 protein of unknown function DUF162
YP_002434821.1	TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: dde:Dde_1843 iron-sulfur cluster binding protein
YP_002434822.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1842 hypothetical protein
YP_002434823.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dde:Dde_1841 short chain dehydrogenase/reductase family oxidoreductase
YP_002434824.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_1840 multiple antibiotic resistance (MarC)-related proteins
YP_002434825.1	KEGG: dde:Dde_2065  lipoprotein
YP_002434826.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2066 thioredoxin reductase (NADPH)
YP_002434827.1	TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: dde:Dde_2067 thioredoxin
YP_002434828.1	KEGG: dde:Dde_2068 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease
YP_002434829.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_002434830.1	KEGG: dde:Dde_2070 hypothetical protein
YP_002434831.1	PFAM: hypothetical protein; KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein
YP_002434832.1	PFAM: septum formation initiator; KEGG: dde:Dde_2072 cell division protein FtsB
YP_002434833.1	KEGG: dde:Dde_2073 hypothetical protein
YP_002434834.1	TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dde:Dde_2074 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_002434835.1	PFAM: Mrp protein; KEGG: dde:Dde_2075 hypothetical protein
YP_002434836.1	PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_2076 hypothetical protein
YP_002434837.1	KEGG: dde:Dde_2077 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_002434838.1	PFAM: CBS domain containing protein; KEGG: dde:Dde_2078 CBS
YP_002434839.1	PFAM: peptidase M23; KEGG: dde:Dde_2079 M24/M37 family peptidase
YP_002434840.1	PFAM: protein of unknown function DUF488; KEGG: gme:Gmet_0156 protein of unknown function DUF488
YP_002434841.1	PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase
YP_002434842.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_002434843.1	TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dde:Dde_2082 biotin--acetyl-CoA-carboxylase ligase
YP_002434844.1	KEGG: dde:Dde_2083 tRNA nucleotidyltransferase, PFAM: polynucleotide adenylyltransferase region; SMART: metal-dependent phosphohydrolase HD region
YP_002434845.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_002434846.1	KEGG: dde:Dde_1777 hypothetical protein
YP_002434847.1	PFAM: PTS system sorbose subfamily IIB component; KEGG: dde:Dde_1776 PTS system, IIB component
YP_002434848.1	PFAM: PTS system fructose subfamily IIA component; KEGG: dde:Dde_1775 PTS system, IIA component
YP_002434849.1	PFAM: conserved hypothetical protein; KEGG: dde:Dde_1774 hypothetical protein
YP_002434850.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dde:Dde_1773  PTS IIA-like nitrogen-regulatory protein PtsN
YP_002434851.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dde:Dde_1772 SSU ribosomal protein S30P / sigma 54 modulation protein
YP_002434852.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: dde:Dde_1771 sigma-54 factor
YP_002434853.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1770 ATPase
YP_002434854.1	PFAM: OstA family protein; KEGG: dde:Dde_1769 hypothetical protein
YP_002434855.1	PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein
YP_002434856.1	TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: dde:Dde_1767 phosphatase KdsC
YP_002434857.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_002434858.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_002434859.1	KEGG: dde:Dde_1764 phosphoribosylformylglycinamidine synthase I
YP_002434860.1	KEGG: dde:Dde_1763 hypothetical protein
YP_002434861.1	KEGG: dde:Dde_1759 hypothetical protein
YP_002434862.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: bph:Bphy_1097 magnesium-translocating P-type ATPase
YP_002434863.1	KEGG: dde:Dde_1758 hypothetical protein
YP_002434864.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_002434865.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: lip:LI1014 hypothetical protein
YP_002434866.1	PFAM: nitroreductase; KEGG: hmo:HM1_3019 nitroreductase family protein
YP_002434867.1	KEGG: dde:Dde_2084 phenylacetate-CoA ligase
YP_002434868.1	KEGG: bbt:BBta_5793 hypothetical protein
YP_002434870.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2085 iron-sulfur cluster-binding protein
YP_002434871.1	unknown function; probable involvement in glutamate synthesis
YP_002434872.1	PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_2088 ACT domain-containing protein
YP_002434873.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_3195 molybdopterin oxidoreductase
YP_002434874.1	KEGG: dde:Dde_2091 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase
YP_002434875.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_002434876.1	KEGG: dde:Dde_2093 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: DNA-binding protein; NAD-dependent DNA ligase
YP_002434877.1	KEGG: dde:Dde_2094 hypothetical protein
YP_002434878.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; ion transport 2 domain protein; KEGG: dde:Dde_2095 TrkA family potassium uptake protein
YP_002434879.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-subunit beta is inserted between the strands, where it probes for the presence of a lesion
YP_002434880.1	KEGG: dde:Dde_2097 hypothetical protein
YP_002434882.1	KEGG: ank:AnaeK_0840 leucyl/phenylalanyl-tRNA/protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase
YP_002434883.1	KEGG: dde:Dde_2099 ATPase; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA; ATP-dependent Clp protease ATP-binding subunit clpA; SMART: ATPase AAA
YP_002434884.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dde:Dde_2100 ATP-dependent Clp protease adaptor protein ClpS
YP_002434885.1	PFAM: adenylate cyclase; KEGG: dde:Dde_2101 adenylate cyclase
YP_002434886.1	PFAM: Camphor resistance CrcB protein; KEGG: dde:Dde_2102 camphor resistance protein CrcB
YP_002434887.1	PFAM: protein of unknown function DUF190; KEGG: dde:Dde_2103 hypothetical protein
YP_002434888.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bph:Bphy_6404 GCN5-related N-acetyltransferase
YP_002434889.1	PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mem:Memar_1210 nitrite and sulphite reductase 4Fe-4S region
YP_002434890.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_2104 response regulator receiver domain-containing protein
YP_002434891.1	PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_2105 MCP methyltransferase, CheR-type
YP_002434892.1	PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_2106 chemotaxis protein CheA
YP_002434893.1	PFAM: response regulator receiver; KEGG: dde:Dde_2107 response regulator receiver domain-containing protein
YP_002434894.1	KEGG: dde:Dde_2108 methyl-accepting chemotaxis sensory transducer
YP_002434895.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: dde:Dde_1752 methyl-accepting chemotaxis sensory transducer
YP_002434896.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_002434897.1	KEGG: dde:Dde_2111 hypothetical protein
YP_002434898.1	KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_002434899.1	catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate
YP_002434900.1	PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_2114 thioredoxin family protein
YP_002434901.1	PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dde:Dde_2115 methionine synthase (B12-dependent)
YP_002434902.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: dde:Dde_2116 sigma 70 family protein
YP_002434903.1	PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_2117 hypothetical protein
YP_002434904.1	KEGG: dde:Dde_2118 hypothetical protein
YP_002434905.1	KEGG: dde:Dde_2119 hypothetical protein
YP_002434906.1	KEGG: dde:Dde_2120 ribose-5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: ribose/galactose isomerase
YP_002434907.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_002434908.1	PFAM: hypothetical protein; peptidase M48 Ste24p; SMART: hypothetical protein; KEGG: dde:Dde_2122 TPR repeat-containing protein
YP_002434909.1	PFAM: Appr-1-p processing domain protein; KEGG: ank:AnaeK_0859 Appr-1-p processing domain protein
YP_002434910.1	heat shock protein involved in degradation of misfolded proteins
YP_002434911.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_002434912.1	KEGG: dde:Dde_2126 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase
YP_002434913.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_002434914.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_002434915.1	PFAM: transcription factor CarD; KEGG: dde:Dde_2129 CarD family transcriptional regulator
YP_002434916.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_002434917.1	PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pna:Pnap_4517 bilirubin oxidase
YP_002434918.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2050 diguanylate cyclase
YP_002434919.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: dde:Dde_2052 sigma-70 factor
YP_002434920.1	KEGG: dde:Dde_2053 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein
YP_002434921.1	PFAM: DNA mismatch repair protein MutS; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: dde:Dde_2054 DNA mismatch repair protein MutS-like
YP_002434922.1	KEGG: dde:Dde_2055 GatB/YqeY family protein
YP_002434923.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_002434924.1	KEGG: dde:Dde_2057 hypothetical protein
YP_002434925.1	PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_2058 histone-like DNA-binding protein
YP_002434926.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_002434927.1	KEGG: dde:Dde_2062 hypothetical protein
YP_002434928.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002434929.1	KEGG: dde:Dde_2064 hypothetical protein
YP_002434930.1	KEGG: dde:Dde_1838 hypothetical protein
YP_002434931.1	PFAM: PGAP1 family protein; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like
YP_002434932.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1836 glycosyl transferase, group 1 family protein
YP_002434933.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1835 glycosyl transferase, group 1 family protein
YP_002434934.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1834 diguanylate cyclase
YP_002434935.1	TIGRFAM: C_GCAxxG_C_C family protein; KEGG: glo:Glov_3529 C_GCAxxG_C_C family protein
YP_002434936.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfu:Sfum_1907 LysR family transcriptional regulator
YP_002434937.1	TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: dde:Dde_1833 hypothetical protein
YP_002434938.1	PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bce:BC4053 GntR family transcriptional regulator
YP_002434939.1	catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate
YP_002434940.1	catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source
YP_002434941.1	PFAM: aminotransferase class-III; KEGG: dps:DP0541 aminotransferase
YP_002434942.1	TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dde:Dde_1553 L-alanine dehydrogenase
YP_002434943.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mja:MJ0412 nitrate transporter protein (NrtC) homolog (CmpC)
YP_002434944.1	KEGG: vei:Veis_0768 ABC-type nitrate/sulfonate/bicarbonate transporters periplasmic components-like protein
YP_002434945.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rpt:Rpal_4641 binding-protein-dependent transport systems inner membrane component
YP_002434946.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: vei:Veis_1108 binding-protein-dependent transport systems inner membrane component
YP_002434947.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mtp:Mthe_0218 ABC transporter
YP_002434948.1	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: dde:Dde_1832 magnesium transporter
YP_002434949.1	KEGG: dde:Dde_1831 nicotinate-nucleotide pyrophosphorylase [carboxylating]; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase
YP_002434950.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_002434951.1	KEGG: dde:Dde_1829 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase
YP_002434952.1	PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: wsu:WS0137 NCAIR mutase (PurE)-related protein
YP_002434953.1	PFAM: protein of unknown function DUF111; KEGG: cbe:Cbei_0559 hypothetical protein
YP_002434954.1	PFAM: aldo/keto reductase; KEGG: mbn:Mboo_0951 aldo/keto reductase
YP_002434955.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator; KEGG: dps:DP1867 transcription regulator (AraC-type)
YP_002434956.1	KEGG: dde:Dde_1828 hypothetical protein
YP_002434957.1	PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1827 protoheme IX farnesyltransferase
YP_002434958.1	TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; KEGG: dde:Dde_1826 cytochrome C oxidase subunit II
YP_002434959.1	TIGRFAM: caa(3)-type oxidase subunit IV; KEGG: dde:Dde_1825 Caa(3)-type oxidase subunit IV
YP_002434960.1	PFAM: cytochrome C oxidase subunit III; KEGG: dde:Dde_1824 cytochrome C oxidase subunit III
YP_002434961.1	TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: dde:Dde_1823 cytochrome-c oxidase
YP_002434962.1	KEGG: dde:Dde_1822 uncharacterized protein SCO1/SenC/PrrC
YP_002434963.1	PFAM: cytochrome C class I; KEGG: dde:Dde_1821 cytochrome c-553
YP_002434964.1	PFAM: cytochrome C class I; KEGG: dde:Dde_1821 cytochrome c-553
YP_002434965.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_002434966.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_002434967.1	TIGRFAM: preprotein translocase subunit YajC; PFAM: YajC family protein; KEGG: dde:Dde_1817 protein translocase subunit YajC
YP_002434968.1	PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: amu:Amuc_0711 sodium/hydrogen exchanger
YP_002434969.1	PFAM: glutamate synthase subunit alpha domain protein; KEGG: dde:Dde_1816 glutamate synthase (NADPH) GltB3 subunit
YP_002434970.1	PFAM: glutamine amidotransferase class-II; KEGG: dde:Dde_1815 glutamate synthase (NADPH) GltB1 subunit
YP_002434971.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: dde:Dde_1814 glutamate synthase (NADPH) GltB2 subunit
YP_002434972.1	KEGG: dde:Dde_1813  carboxylesterase
YP_002434973.1	PFAM: amidohydrolase; amidohydrolase; KEGG: dde:Dde_1812 atrazine chlorohydrolase
YP_002434974.1	KEGG: dde:Dde_1811 hypothetical protein
YP_002434975.1	catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate
YP_002434976.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_002434977.1	KEGG: dde:Dde_1808 hypothetical protein
YP_002434978.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: dde:Dde_1807 CBS
YP_002434979.1	transfers the fatty acyl group on membrane lipoproteins
YP_002434980.1	KEGG: bpm:BURPS1710b_3602 hypothetical protein
YP_002434981.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1801 diguanylate cyclase
YP_002434982.1	KEGG: dde:Dde_1800 flagellar synthesis regulator FleN
YP_002434983.1	PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_1799 histone-like DNA-binding protein
YP_002434984.1	KEGG: aav:Aave_1289 collagen triple helix repeat
YP_002434985.1	KEGG: ddsi:GD15658-PA
YP_002434986.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_002434987.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_002434988.1	TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer
YP_002434989.1	PFAM: cyclase family protein; KEGG: dde:Dde_1664 cyclase
YP_002434990.1	catalyzes the formation of fumarate from aspartate
YP_002434991.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cvi:CV_3185 peptidyl-prolyl cis-trans isomerase
YP_002434992.1	KEGG: dde:Dde_1661 ATPase; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA-2 domain protein; SMART: ATPase AAA
YP_002434993.1	KEGG: dde:Dde_1660 DafA protein
YP_002434994.1	PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dde:Dde_1659 heat shock protein DnaJ-like
YP_002434995.1	PFAM: polysaccharide deacetylase; KEGG: dde:Dde_1658 polysaccharide deacetylase family protein
YP_002434996.1	TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bav:BAV1572 autotransporter
YP_002434997.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dde:Dde_1657 L-threonine aldolase
YP_002434998.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein
YP_002434999.1	KEGG: dde:Dde_1654 hypothetical protein
YP_002435000.1	PFAM: PhoH family protein; KEGG: dde:Dde_1653 PhoH family protein
YP_002435001.1	KEGG: dde:Dde_1652 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_002435002.1	PFAM: protein of unknown function UPF0054; KEGG: dde:Dde_1651 hypothetical protein
YP_002435003.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002435004.1	KEGG: dde:Dde_2616 hypothetical protein
YP_002435005.1	KEGG: dde:Dde_2617 hypothetical protein
YP_002435006.1	PFAM: ATP-NAD/AcoX kinase; KEGG: dde:Dde_2618 NAD(+) kinase
YP_002435007.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_002435008.1	TIGRFAM: regulatory protein, FmdB family; PFAM:  regulatory protein FmdB; KEGG: dde:Dde_2620 hypothetical protein
YP_002435009.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_002435010.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lip:LIC103 methyl-accepting chemotaxis protein
YP_002435011.1	PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0908 XRE family transcriptional regulator
YP_002435012.1	KEGG: dde:Dde_2623 hypothetical protein
YP_002435013.1	KEGG: dde:Dde_2624 hypothetical protein
YP_002435014.1	KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein
YP_002435015.1	KEGG: dde:Dde_2626 ATP-dependent protease
YP_002435017.1	PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein
YP_002435018.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4835 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_002435019.1	TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dde:Dde_1646 peptidase C56, PfpI
YP_002435020.1	TIGRFAM: phosphonate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3724 phosphonate ABC transporter permease
YP_002435021.1	TIGRFAM: phosphonate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3725 phosphonate ABC transporter inner membrane protein
YP_002435022.1	KEGG: mrd:Mrad2831_4575 phosphonate ABC transporter ATPase; TIGRFAM: phosphonate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA
YP_002435023.1	TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_3730 phosphonate-binding periplasmic protein
YP_002435024.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: haloacid dehalogenase; KEGG: dde:Dde_3732 HAD family hydrolase
YP_002435025.1	TIGRFAM: degV family protein; PFAM: DegV family protein; Dak phosphatase; KEGG: dde:Dde_1644 DegV family protein
YP_002435026.1	KEGG: dde:Dde_1642 hypothetical protein
YP_002435027.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_02497 ferridoxin
YP_002435028.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1639 2-oxoglutarate ferredoxin oxidoreductase subunit alpha
YP_002435029.1	catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_002435030.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_1637 2-oxoglutarate ferredoxin oxidoreductase, subunit gamma
YP_002435031.1	KEGG: dde:Dde_1636 hypothetical protein
YP_002435032.1	PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_3727 acetyltransferase, GNAT family
YP_002435033.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: dde:Dde_1635 Fis family transcriptional regulator
YP_002435034.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sfu:Sfum_4076 pyruvate ferredoxin/flavodoxin oxidoreductase
YP_002435035.1	KEGG: sfu:Sfum_4075 thiamine pyrophosphate enzyme domain protein TPP-binding; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding
YP_002435036.1	KEGG: dde:Dde_1634 hypothetical protein
YP_002435037.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_002435038.1	KEGG: dde:Dde_1632 nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase
YP_002435039.1	SMART: hypothetical protein; KEGG: dde:Dde_1630 hypothetical protein
YP_002435040.1	PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1629 heptosyltransferase family protein
YP_002435041.1	KEGG: dde:Dde_1165 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Cache type 2 domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435042.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase
YP_002435043.1	KEGG: ddse:GM16758-PA
YP_002435044.1	PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dol:Dole_0871 chemotaxis protein CheA
YP_002435045.1	PFAM: CheW domain protein; KEGG: gur:Gura_2986  CheW protein
YP_002435046.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_1627 methyl-accepting chemotaxis sensory transducer
YP_002435047.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0235 BadM/Rrf2 family transcriptional regulator
YP_002435048.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0224 BadM/Rrf2 family transcriptional regulator
YP_002435049.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase
YP_002435050.1	PFAM: protein of unknown function DUF1641; KEGG: dde:Dde_0222 hypothetical protein
YP_002435051.1	PFAM: response regulator receiver; KEGG: dde:Dde_0221 response regulator receiver domain-containing protein
YP_002435052.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: dde:Dde_0220 Sel1 repeat-containing protein
YP_002435053.1	PFAM: protein of unknown function DUF214; KEGG: gsu:GSU1164 ABC transporter permease
YP_002435054.1	PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_2406 protein of unknown function DUF214
YP_002435055.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gsu:GSU1162 ABC transporter ATP-binding protein
YP_002435056.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gsu:GSU1161 RND family efflux transporter MFP subunit
YP_002435058.1	PFAM: phosphoglycerate mutase; KEGG: pca:Pcar_0229 fructose-2,6-bisphosphatase
YP_002435059.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gur:Gura_1006 metal dependent phosphohydrolase
YP_002435060.1	PFAM: protein of unknown function DUF182; KEGG: pth:PTH_0686 xanthine and CO dehydrogenases maturation factor
YP_002435061.1	KEGG: gme:Gmet_1800 coenzyme F390 synthetase-like
YP_002435062.1	PFAM: radical SAM protein; KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB
YP_002435063.1	KEGG: dps:DP0266 hypothetical protein
YP_002435064.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gur:Gura_1001 methyltransferase type 11
YP_002435065.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gur:Gura_0999 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_002435066.1	PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: dde:Dde_3539 aldehyde dehydrogenase, molybdenum-binding subunit apoprotein
YP_002435067.1	PFAM: molybdopterin binding domain; KEGG: dde:Dde_3538 molybdenum cofactor cytidylyltransferase
YP_002435068.1	Contains selenocysteine; TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_3510 formate dehydrogenase, subunit alpha
YP_002435069.1	KEGG: sfu:Sfum_0037 formate dehydrogenase subunit beta
YP_002435070.1	PFAM: formate dehydrogenase accessory protein; KEGG: sfu:Sfum_0038 protein involved in formate dehydrogenase formation
YP_002435071.1	KEGG: dde:Dde_3513 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, subunit alpha; Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region
YP_002435072.1	KEGG: dde:Dde_3514 formate dehydrogenase subunit beta
YP_002435073.1	PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_3515 formate dehydrogenase formation protein FdhE
YP_002435074.1	PFAM: cytochrome C class III; KEGG: dde:Dde_0653 high-molecular-weight cytochrome C
YP_002435075.1	PFAM: regulatory protein LysR; KEGG: sfu:Sfum_0033  ModE family transcriptional regulator
YP_002435076.1	KEGG: dde:Dde_2862 hypothetical protein
YP_002435077.1	PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: hmo:HM1_2344 agmatine deiminase
YP_002435078.1	TIGRFAM: N-carbamoylputrescine amidase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ypb:YPTS_3343 N-carbamoylputrescine amidase
YP_002435079.1	PFAM: amidohydrolase; KEGG: bpe:BP2617 hypothetical protein
YP_002435080.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: lip:LI0076 sugar ABC transporter ATP-binding protein
YP_002435081.1	PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 probable extracellular solute-binding protein
YP_002435082.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transporter
YP_002435083.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ajs:Ajs_3304 binding-protein-dependent transport systems inner membrane component
YP_002435084.1	KEGG: mka:MK0390 HD-superfamily hydrolase
YP_002435085.1	PFAM: patatin; KEGG: dde:Dde_0819 alpha-beta hydrolase superfamily esterase
YP_002435086.1	TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0849 periplasmic sensor signal transduction histidine kinase
YP_002435087.1	KEGG: neu:NE0796 capsular polysaccharide biosynthesis protein CapK
YP_002435088.1	KEGG: rci:RCIX258 hypothetical protein
YP_002435089.1	PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mxa:MXAN_2358 decarboxylase, pyridoxal-dependent
YP_002435090.1	PFAM: protein of unknown function DUF201; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein
YP_002435091.1	KEGG: reh:H16_B0786 hypothetical protein
YP_002435092.1	KEGG: mlo:mlr0961 glycosyltransferase
YP_002435093.1	KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein
YP_002435094.1	KEGG: sus:acid_4187 hypothetical protein
YP_002435095.1	KEGG: dde:Dde_0850 two component Fis family transcriptional regulator; TIGRFAM: PEP-CTERM system response regulator; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA
YP_002435096.1	TIGRFAM: EpsI family protein; KEGG: dde:Dde_0848 hypothetical protein
YP_002435097.1	TIGRFAM: eight transmembrane protein EpsH; PFAM: Eight transmembrane protein EpsH; KEGG: dde:Dde_0847 hypothetical protein
YP_002435098.1	PFAM: glycosyl transferase group 1; KEGG: scl:sce8918 glycosyltransferase
YP_002435099.1	KEGG: pat:Patl_1177 hypothetical protein
YP_002435100.1	KEGG: scl:sce6563 hypothetical protein
YP_002435101.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0838 glycosyl transferase, group 1 family protein
YP_002435102.1	PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3263  glycosyltransferase
YP_002435103.1	PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rru:Rru_A3093 membrane protein involved in the export of O-antigen and teichoic acid-like
YP_002435104.1	PFAM: O-antigen polymerase; KEGG: gbm:Gbem_1788 O-antigen polymerase
YP_002435105.1	KEGG: swi:Swit_2495 hypothetical protein
YP_002435106.1	PFAM: glycosyl transferase family 2; KEGG: maq:Maqu_1655 glycosyl transferase
YP_002435107.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gur:Gura_2343 DegT/DnrJ/EryC1/StrS aminotransferase
YP_002435108.1	TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: ppd:Ppro_2469 hypothetical protein
YP_002435109.1	TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: ppd:Ppro_2470 polysaccharide deacetylase
YP_002435110.1	TIGRFAM: PEP-CTERM system associated protein; KEGG: dde:Dde_0834  lipoprotein
YP_002435111.1	TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: ATPase AAA; KEGG: dde:Dde_0833 ATPase
YP_002435112.1	TIGRFAM: capsular exopolysaccharide family; exopolysaccharide/PEPCTERM locus tyrosine autokinase; KEGG: dde:Dde_0832 protein-tyrosine kinase
YP_002435113.1	TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: dde:Dde_0831 chain length determinant family protein
YP_002435114.1	TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: dde:Dde_0830 capsular polysaccharide transporter
YP_002435115.1	TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: dde:Dde_0829 sugar transferase involved in lipopolysaccharide synthesis-like
YP_002435116.1	KEGG: dde:Dde_0828 hypothetical protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: hypothetical protein; hypothetical protein; hypothetical protein; SMART: hypothetical protein
YP_002435117.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_0822 hypothetical protein
YP_002435118.1	PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein
YP_002435119.1	PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein
YP_002435120.1	TIGRFAM: CAAX prenyl protease-related protein; PFAM: hypothetical protein; KEGG: dde:Dde_0824 CAAX amino terminal protease family protein
YP_002435121.1	PFAM: secretion protein HlyD; KEGG: dde:Dde_0825 hypothetical protein
YP_002435122.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0826 ATPase
YP_002435123.1	PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter permease
YP_002435124.1	PFAM: sigma-54 factor interaction domain-containing protein; ATPase AAA; SMART: AAA ATPase; KEGG: dde:Dde_0820 two component Fis family transcriptional regulator
YP_002435125.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dol:Dole_2401 two component, sigma54 specific, Fis family transcriptional regulator
YP_002435126.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dol:Dole_2392 histidine kinase
YP_002435128.1	PFAM: protein of unknown function DUF81; KEGG: pth:PTH_2261 predicted permease
YP_002435129.1	KEGG: pth:PTH_2262 hypothetical protein
YP_002435130.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0630 pyruvate, water dikinase
YP_002435131.1	PFAM: response regulator receiver; KEGG: dol:Dole_2394 response regulator receiver protein
YP_002435132.1	PFAM: PEP-utilising protein mobile region; KEGG: sfu:Sfum_2666 pyruvate, water dikinase
YP_002435133.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: sfu:Sfum_2666 pyruvate, water dikinase
YP_002435134.1	PFAM: metallophosphoesterase; KEGG: dol:Dole_0345 metallophosphoesterase
YP_002435135.1	PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: lip:LI0836 predicted transcriptional regulator
YP_002435136.1	KEGG: dde:Dde_3347 hypothetical protein
YP_002435137.1	KEGG: dde:Dde_3348 hypothetical protein
YP_002435138.1	PFAM: transposase-like Mu; KEGG: bvi:Bcep1808_1328 MuA-transposase/repressor protein CI, DNA-binding
YP_002435139.1	KEGG: aav:Aave_4120 bacteriophage DNA transposition B protein
YP_002435140.1	KEGG: pol:Bpro_3754 hypothetical protein
YP_002435141.1	KEGG: bvi:Bcep1808_1324 LacI family transcriptional regulator
YP_002435143.1	KEGG: dde:Dde_3357 hypothetical protein
YP_002435145.1	PFAM: protein of unknown function DUF1018; KEGG: ypy:YPK_0202 protein of unknown function DUF1018
YP_002435146.1	PFAM: Mor transcription activator domain protein; KEGG: cvi:CV_0355 hypothetical protein
YP_002435147.1	KEGG: lip:LIC084 phage-related membrane protein
YP_002435148.1	PFAM: lytic transglycosylase catalytic; KEGG: lip:LIC036  lytic murein transglycosylase precursor
YP_002435149.1	KEGG: eca:ECA2778 hypothetical protein
YP_002435151.1	KEGG: ypy:YPK_0195 hypothetical protein
YP_002435152.1	PFAM: protein of unknown function DUF1804; KEGG: ypy:YPK_0194 protein of unknown function DUF1804
YP_002435153.1	TIGRFAM: phage uncharacterized protein; KEGG: nma:NMA1852 hypothetical protein
YP_002435154.1	PFAM: protein of unknown function DUF935; KEGG: lip:LI0833 hypothetical protein NMA1314
YP_002435155.1	TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM:  head morphogenesis protein SPP1 gp7; KEGG: cvi:CV_2138 hypothetical protein
YP_002435156.1	TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein
YP_002435157.1	KEGG: slo:Shew_2180 hypothetical protein
YP_002435158.1	KEGG: slo:Shew_2179 hypothetical protein
YP_002435159.1	KEGG: bvi:Bcep1808_1303 hypothetical protein
YP_002435160.1	KEGG: lip:LIC067 hypothetical protein
YP_002435161.1	KEGG: cel:ZK84.1 ZK84.1
YP_002435162.1	PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein
YP_002435163.1	PFAM: Domain of unknown function DUF1834; KEGG: lip:LIC069 hypothetical protein
YP_002435164.1	KEGG: hsm:HSM_0675 hypothetical protein
YP_002435165.1	PFAM: Mu tail sheath family protein; KEGG: bbr:BB3621  phage tail sheath protein
YP_002435166.1	KEGG: bbr:BB3620 hypothetical protein
YP_002435167.1	KEGG: lip:LIC072 NA
YP_002435168.1	KEGG: bbr:BB3617 hypothetical protein
YP_002435169.1	PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein
YP_002435170.1	KEGG: bbr:BB3615  phage tail protein
YP_002435171.1	TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; KEGG: cvi:CV_0345 bacteriophage base plate protein
YP_002435172.1	KEGG: hmo:HM1_0929 hypothetical protein
YP_002435173.1	KEGG: bbr:BB3613 hypothetical protein
YP_002435174.1	PFAM: Baseplate J family protein; KEGG: bbr:BB3612  phage tail protein
YP_002435175.1	KEGG: lip:LIC089 hypothetical protein
YP_002435176.1	KEGG: lip:LIC026 hypothetical protein
YP_002435177.1	KEGG: esa:ESA_01046 hypothetical protein
YP_002435178.1	KEGG: dde:Dde_3395 hypothetical protein
YP_002435179.1	KEGG: ecs:ECs4998  DNA modification protein
YP_002435180.1	KEGG: fjo:Fjoh_4853 hypothetical protein
YP_002435181.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1596 glycosyl transferase, group 2 family protein
YP_002435182.1	KEGG: cre:CHLREDRAFT_149841 hypothetical protein Pfam: Extensin_2 PROSITE: ALA_RICH GLN_RICH HIS_RICH PRO_RICH
YP_002435183.1	PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1595 hypothetical protein
YP_002435184.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_002435185.1	PFAM: PSP1 domain protein; KEGG: dde:Dde_1593 hypothetical protein
YP_002435186.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1591 hypothetical protein
YP_002435187.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1590 glycosyl transferase, group 2 family protein
YP_002435188.1	catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate
YP_002435189.1	PFAM: UvrD/REP helicase; KEGG: dde:Dde_1588 ATP-dependent DNA helicase UvrD
YP_002435190.1	KEGG: dde:Dde_1587 hypothetical protein
YP_002435191.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: lip:LI1075 dioxygenases related to 2-nitropropane dioxygenase
YP_002435192.1	PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dde:Dde_1585 site-specific recombinase XerD-like
YP_002435193.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase
YP_002435194.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; KEGG: dde:Dde_1583  signal transduction protein
YP_002435195.1	KEGG: dde:Dde_1582 hypothetical protein
YP_002435196.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA
YP_002435197.1	TIGRFAM: tol-pal system protein YbgF; PFAM: hypothetical protein; KEGG: dde:Dde_1580 TPR domain-containing protein
YP_002435198.1	KEGG: dde:Dde_1579 hypothetical protein
YP_002435199.1	PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_1577 chemotaxis protein CheA
YP_002435200.1	PFAM: response regulator receiver; KEGG: dde:Dde_1576 response regulator receiver domain-containing protein
YP_002435201.1	PFAM: CheW domain protein; KEGG: dde:Dde_1575 CheW protein
YP_002435202.1	PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_1574 ParA family protein
YP_002435203.1	PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_1573 MCP methyltransferase, CheR-type
YP_002435204.1	PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: dde:Dde_1572 heat repeat-containing PBS lyase
YP_002435205.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_1571 response regulator receiver domain-containing protein
YP_002435206.1	PFAM: NLP/P60 protein; KEGG: dsy:DSY2087 hypothetical protein
YP_002435207.1	KEGG: har:HEAR3040 hypothetical protein
YP_002435208.1	KEGG: tbd:Tbd_1726 L-sorbosone dehydrogenase
YP_002435210.1	KEGG: dps:DP2299 hypothetical protein
YP_002435211.1	PFAM: flagellin domain protein; KEGG: dde:Dde_1570 flagellin
YP_002435212.1	KEGG: dde:Dde_1569 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region
YP_002435213.1	PFAM: extracellular solute-binding protein family 5; KEGG: lip:LI0169 ABC-type dipeptide transporter, periplasmic component
YP_002435214.1	KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like; PFAM: SNF2-related protein; helicase; SMART: DEAD-like helicases
YP_002435215.1	KEGG: psa:PST_1468 hypothetical protein
YP_002435216.1	PFAM: CheW domain protein; KEGG: lip:LI1170 chemotaxis signal transduction protein
YP_002435217.1	PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer
YP_002435218.1	PFAM: helix-turn-helix domain protein; KEGG: ote:Oter_3445 XRE family transcriptional regulator
YP_002435219.1	PFAM: Calcium-binding EF-hand-containing protein; KEGG: yli:YALI0A06864g hypothetical protein
YP_002435220.1	PFAM: Calcium-binding EF-hand-containing protein; KEGG: abu:Abu_1162 hypothetical protein
YP_002435221.1	KEGG: dde:Dde_1558 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_002435222.1	catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate
YP_002435223.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center
YP_002435224.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_002435225.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: dde:Dde_1554 thiamine biosynthesis protein ThiS
YP_002435226.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rca:Rcas_0164 ABC transporter
YP_002435227.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rrs:RoseRS_4593 binding-protein-dependent transport systems inner membrane component
YP_002435228.1	PFAM: UspA domain protein; KEGG: sfu:Sfum_0624 UspA domain protein
YP_002435229.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: bha:BH0390 hypothetical protein
YP_002435230.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pau:PA14_21720 AraC family transcriptional regulator
YP_002435231.1	PFAM: sodium symporter; KEGG: afw:Anae109_3613 bile acid:sodium symporter
YP_002435232.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: psb:Psyr_0649 helix-turn-helix, AraC type:AraC protein, arabinose-binding/dimerisation
YP_002435233.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: dde:Dde_0410 glycerol kinase
YP_002435234.1	PFAM: major intrinsic protein; KEGG: dde:Dde_0409 glycerol uptake facilitator protein
YP_002435235.1	PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_0408 glycerol-3-phosphate dehydrogenase, FAD-dependent
YP_002435236.1	PFAM:  sugar-binding domain protein; KEGG: dde:Dde_0407 transcriptional regulator
YP_002435237.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dde:Dde_1545 single-strand binding protein
YP_002435238.1	KEGG: dde:Dde_1544 hypothetical protein
YP_002435239.1	KEGG: dde:Dde_1543 hypothetical protein
YP_002435240.1	PFAM: acetyl-CoA carboxylase subunit alpha; KEGG: dde:Dde_1542 acetyl-CoA carboxylase
YP_002435241.1	PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; KEGG: dde:Dde_1541 pyruvate carboxylase
YP_002435242.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1540 hypothetical protein
YP_002435243.1	PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein
YP_002435244.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1538 chemotaxis protein MotA
YP_002435245.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_002435246.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: lip:LI0145 GTP-binding protein LepA
YP_002435247.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dol:Dole_0427 two component, sigma54 specific, Fis family transcriptional regulator
YP_002435248.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dol:Dole_0426 signal transduction histidine kinase, nitrogen specific, NtrB
YP_002435250.1	PFAM: cytochrome C assembly protein; KEGG: dde:Dde_1477 cytochrome C biogenesis protein CcmF
YP_002435251.1	PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1473 hypothetical protein
YP_002435252.1	KEGG: dde:Dde_1532 hypothetical protein
YP_002435253.1	PFAM: alpha/beta hydrolase fold; KEGG: dde:Dde_1531 hypothetical protein
YP_002435254.1	PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: dde:Dde_1530 hypothetical protein
YP_002435255.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ana:alr5216 probable hemolysin
YP_002435256.1	PFAM: zinc finger DksA/TraR C4-type; KEGG: sew:SeSA_A0973 C4-type hypothetical protein, DksA/TraR family
YP_002435257.1	PFAM: cobalamin biosynthesis protein CbiB; KEGG: dde:Dde_1529 adenosylcobinamide-phosphate synthase
YP_002435258.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1528 RNA methyltransferase
YP_002435259.1	PFAM: glycoside hydrolase; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase
YP_002435260.1	PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_2282 hydantoinase/oxoprolinase family protein
YP_002435261.1	KEGG: dde:Dde_2283 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA
YP_002435262.1	KEGG: shm:Shewmr7_0582 hypothetical protein
YP_002435263.1	PFAM: peptidase T2 asparaginase 2; KEGG: dde:Dde_2284 asparaginase
YP_002435264.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_002435265.1	TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: dde:Dde_2286 glycogen/starch synthase, ADP-glucose type
YP_002435266.1	PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/NUDIX family protein
YP_002435267.1	PFAM: glycosyl transferase family 9; KEGG: art:Arth_0353 glycosyl transferase, family 9
YP_002435268.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: dde:Dde_2289 translation factor SUA5
YP_002435269.1	PFAM: protein of unknown function DUF163; KEGG: dde:Dde_2291 hypothetical protein
YP_002435270.1	KEGG: dde:Dde_3699 hypothetical protein
YP_002435271.1	KEGG: dde:Dde_2292 hypothetical protein
YP_002435272.1	PFAM: glucose inhibited division protein; KEGG: dde:Dde_2293 methyltransferase GidB
YP_002435273.1	PFAM: acyl transferase; KEGG: dde:Dde_2294 [acyl-carrier-protein] S-malonyltransferase
YP_002435274.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_002435275.1	PFAM: sporulation domain protein; KEGG: lip:LI0230 hypothetical protein
YP_002435276.1	PFAM: protein of unknown function DUF140; KEGG: dde:Dde_2297 hypothetical protein
YP_002435277.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2298 ATPase
YP_002435278.1	PFAM: hypothetical protein; KEGG: dde:Dde_2299  ABC transporter substrate-binding protein
YP_002435279.1	PFAM: toluene tolerance family protein; KEGG: lip:LI0234 ABC-type transporter involved in resistance to organic solvents, auxiliary component
YP_002435280.1	PFAM: VacJ family lipoprotein; KEGG: dde:Dde_2301 surface lipoprotein-like
YP_002435281.1	PFAM: cupin; KEGG: dde:Dde_2303 hypothetical protein
YP_002435282.1	KEGG: dde:Dde_2304 hypothetical protein
YP_002435283.1	PFAM: protein of unknown function DUF340 membrane; KEGG: dde:Dde_2305 hypothetical protein
YP_002435284.1	PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_2306 extracellular solute-binding protein
YP_002435285.1	TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2307 amino acid ABC transporter permease
YP_002435286.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2308 ATPase
YP_002435288.1	KEGG: dde:Dde_2309 metal dependent phosphohydrolase; PFAM: amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase HD region
YP_002435289.1	PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_2310 nitrogen regulatory protein P-II (GlnB, GlnK)
YP_002435290.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dde:Dde_2311 ammonium transporter
YP_002435291.1	PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_2313 thiol peroxidase (atypical 2-Cys peroxiredoxin)
YP_002435292.1	KEGG: dde:Dde_2314 hypothetical protein
YP_002435293.1	KEGG: dde:Dde_2315 hypothetical protein
YP_002435294.1	PFAM: RNA binding S1 domain protein; SMART: DNA-binding protein; Resolvase RNase H domain protein fold; KEGG: dde:Dde_2316 RNA-binding domain-containing protein
YP_002435295.1	KEGG: dde:Dde_2351 hypothetical protein
YP_002435296.1	KEGG: dde:Dde_2352 hypothetical protein
YP_002435297.1	PFAM: nuclease (SNase domain protein); KEGG: dde:Dde_2354 nuclease (SNase-like)
YP_002435298.1	PFAM: sodium:neurotransmitter symporter; KEGG: dde:Dde_2371 sodium-dependent symporter family protein
YP_002435299.1	PFAM: thiamine biosynthesis protein; KEGG: dde:Dde_2372 hypothetical protein
YP_002435300.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_002435301.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002435302.1	PFAM: protein of unknown function UPF0052 and CofD; KEGG: sit:TM1040_2627 protein of unknown function UPF0052 and CofD
YP_002435304.1	TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: dde:Dde_2385 phosphate uptake regulator, PhoU
YP_002435305.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_002435306.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dde:Dde_2387 two component transcriptional regulator
YP_002435307.1	PFAM: 3'-5' exonuclease; KEGG: dde:Dde_2388 3'-5' exonuclease
YP_002435308.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like
YP_002435309.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_002435310.1	PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dde:Dde_2393 single-stranded nucleic acid binding R3H
YP_002435311.1	PFAM: hypothetical protein; KEGG: dde:Dde_2394 protein translocase subunit YidC
YP_002435312.1	PFAM: protein of unknown function DUF37; KEGG: dde:Dde_2395 hypothetical protein
YP_002435313.1	TIGRFAM: ribonuclease P; PFAM: ribonuclease P protein; KEGG: dde:Dde_2396 ribonuclease P
YP_002435314.1	PFAM: ribosomal protein L34; KEGG: pca:Pcar_3146 ribosomal protein L34
YP_002435315.1	KEGG: dde:Dde_2398 hypothetical protein
YP_002435316.1	KEGG: dde:Dde_2399 hypothetical protein
YP_002435317.1	PFAM: Hpt domain protein; KEGG: hha:Hhal_0647 multi-sensor hybrid histidine kinase
YP_002435318.1	KEGG: dde:Dde_1191 hypothetical protein
YP_002435319.1	KEGG: dde:Dde_2401 hypothetical protein
YP_002435320.1	KEGG: dde:Dde_2402 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: xylose isomerase; SMART: AP endonuclease family 2
YP_002435321.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: dde:Dde_1463 mercuric reductase
YP_002435322.1	PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein
YP_002435323.1	PFAM: glucokinase; KEGG: dde:Dde_1461 glucokinase
YP_002435324.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1460 hypothetical protein
YP_002435326.1	PFAM: damage inducible protein CinA; KEGG: pap:PSPA7_1522 hypothetical protein
YP_002435327.1	TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: ank:AnaeK_4070 2'-5' RNA ligase
YP_002435328.1	KEGG: dde:Dde_1455 hypothetical protein
YP_002435329.1	PFAM: UspA domain protein; KEGG: dde:Dde_1454 universal stress protein
YP_002435330.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0642 NADH dehydrogenase
YP_002435331.1	TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dde:Dde_1453 histidinol phosphate aminotransferase
YP_002435332.1	KEGG: dde:Dde_1452 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region
YP_002435333.1	TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: drm:Dred_1317 uracil-xanthine permease
YP_002435334.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_002435335.1	TIGRFAM: dephospho-CoA kinase; pseudouridine synthase, RluA family; PFAM: Dephospho-CoA kinase; pseudouridine synthase; KEGG: dde:Dde_1447 pseudouridine synthase, RluD
YP_002435336.1	PFAM: rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein
YP_002435337.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1445 ATPase
YP_002435338.1	PFAM: SufBD protein; KEGG: dde:Dde_1444 hypothetical protein
YP_002435339.1	PFAM: YCII-related; KEGG: cvi:CV_4150 hypothetical protein
YP_002435340.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer
YP_002435341.1	KEGG: dde:Dde_2591 hypothetical protein
YP_002435342.1	KEGG: dde:Dde_2592 hypothetical protein
YP_002435343.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2593 oligopeptide ABC transporter permease protein
YP_002435344.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2594 oligopeptide ABC transporter permease protein
YP_002435345.1	KEGG: glo:Glov_3362 glycosyl transferase family 2
YP_002435346.1	PFAM: SMC domain protein; KEGG: dde:Dde_2596 DNA repair protein RecN
YP_002435347.1	KEGG: dde:Dde_2597 hypothetical protein
YP_002435348.1	KEGG: dde:Dde_2598 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; ribonuclease B OB region domain; SMART: Cold shock protein
YP_002435349.1	KEGG: dde:Dde_2600 lipid-A-disaccharide synthase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase
YP_002435350.1	PFAM: protein of unknown function UPF0005; KEGG: dde:Dde_2601 membrane protein, putaive
YP_002435351.1	KEGG: kra:Krad_1656 flagellar hook-length control protein
YP_002435352.1	PFAM: regulatory protein LuxR; KEGG: pca:Pcar_0664  response regulator protein
YP_002435353.1	PFAM: cytoplasmic chaperone TorD family protein; KEGG: spq:SPAB_02952 hypothetical protein
YP_002435354.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit
YP_002435355.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: stm:STM0612  hydrogenase protein
YP_002435356.1	KEGG: sea:SeAg_B0652 molybdopterin-containing oxidoreductase membrane anchor subunit
YP_002435357.1	SMART: hypothetical protein; KEGG: dde:Dde_2717 hypothetical protein
YP_002435358.1	PFAM: glycoside hydrolase family 57; KEGG: dde:Dde_2603 hypothetical protein
YP_002435359.1	KEGG: mbr:MONBRDRAFT_25873 hypothetical protein
YP_002435360.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_3636 ferredoxin--NADP(+) reductase subunit alpha
YP_002435361.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_002435362.1	KEGG: dde:Dde_1058 hypothetical protein
YP_002435363.1	KEGG: dde:Dde_1057 histidinol-phosphate phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein
YP_002435364.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1055 ATPase
YP_002435365.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dde:Dde_1054 phosphoribosylanthranilate isomerase
YP_002435367.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: pmy:Pmen_3089 protein of unknown function DUF6, transmembrane
YP_002435368.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1052 iron-sulfur cluster-binding protein
YP_002435369.1	PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_1051 HtpX-2 peptidase
YP_002435370.1	PFAM: thioesterase superfamily protein; KEGG: dde:Dde_1049 phenylacetic acid degradation-related protein
YP_002435371.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lip:LIC103 methyl-accepting chemotaxis protein
YP_002435373.1	KEGG: lip:LI1049 NA
YP_002435374.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_002435375.1	PFAM: cell division protein FtsA; KEGG: dde:Dde_1046 cell division protein FtsA
YP_002435376.1	PFAM: polypeptide-transport-associated domain protein FtsQ-type; KEGG: dde:Dde_1045 cell division protein FtsQ
YP_002435377.1	KEGG: dde:Dde_1044 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein
YP_002435378.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_002435379.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002435380.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dde:Dde_1041 cell cycle protein FtsW
YP_002435381.1	TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dde:Dde_1040 UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_002435382.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_002435383.1	TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dde:Dde_1037 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
YP_002435384.1	PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: dde:Dde_1036 peptidoglycan glycosyltransferase
YP_002435385.1	KEGG: dde:Dde_1035 hypothetical protein
YP_002435386.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dde:Dde_1034 methyltransferase
YP_002435387.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_002435388.1	KEGG: dde:Dde_1032 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: HpcH/HpaI aldolase; pyruvate kinase barrel; pyruvate kinase alpha/beta
YP_002435389.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1031 metal dependent phosphohydrolase
YP_002435390.1	PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein
YP_002435391.1	KEGG: dde:Dde_2605 hypothetical protein
YP_002435392.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_002435393.1	forms a direct contact with the tRNA during translation
YP_002435394.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_002435395.1	KEGG: dde:Dde_2610 hypothetical protein
YP_002435396.1	KEGG: dde:Dde_2611  lipoprotein
YP_002435397.1	KEGG: lip:LI0064 predicted transcriptional regulator
YP_002435398.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_002435399.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_002435400.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: dde:Dde_2632 ribulose-5-phosphate 3-epimerase
YP_002435401.1	PFAM: regulatory protein MerR; KEGG: dde:Dde_2633 MerR family transcriptional regulator
YP_002435402.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_002435403.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_002435404.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_002435405.1	PFAM: ribosomal protein L35; KEGG: dde:Dde_2637 50S ribosomal protein L35
YP_002435406.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_002435407.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_002435408.1	PFAM: K potassium transporter; KEGG: sfu:Sfum_3574 K+ potassium transporter
YP_002435409.1	PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: gbm:Gbem_2040 2-hydroxyglutaryl-CoA dehydratase D-component
YP_002435410.1	TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gsu:GSU2520 (R)-2-hydroxyglutaryl-CoA dehydratase activator
YP_002435411.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_002435412.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2642 iron-sulfur cluster-binding protein
YP_002435413.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_1164 alcohol dehydrogenase, iron-containing
YP_002435414.1	KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435415.1	KEGG: bvi:Bcep1808_6345 diguanylate cyclase
YP_002435416.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dde:Dde_2644 Crp/FNR family transcriptional regulator
YP_002435417.1	KEGG: dde:Dde_2645 hypothetical protein
YP_002435418.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: pth:PTH_0998 HD-GYP domain
YP_002435419.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_002435420.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: sat:SYN_02452 NifU-like domain protein
YP_002435421.1	KEGG: dde:Dde_2650 hypothetical protein
YP_002435422.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2651 MATE efflux family protein
YP_002435423.1	KEGG: dde:Dde_2654 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein
YP_002435424.1	KEGG: dde:Dde_2655 biotin synthase; TIGRFAM: biotin synthase; PFAM: radical SAM protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB
YP_002435425.1	TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: dde:Dde_2656 adenosylmethionine-8-amino-7-oxononanoate aminotransferase
YP_002435426.1	KEGG: sat:SYN_03246 hypothetical cytosolic protein
YP_002435427.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_2658 short chain dehydrogenase/reductase family oxidoreductase
YP_002435428.1	KEGG: dde:Dde_2659 acyl carrier protein
YP_002435429.1	PFAM: beta-ketoacyl synthase; KEGG: dde:Dde_2660 beta-ketoacyl synthase
YP_002435430.1	KEGG: dde:Dde_2661 hypothetical protein
YP_002435431.1	PFAM: aminotransferase class I and II; KEGG: dde:Dde_2662 8-amino-7-oxononanoate synthase
YP_002435432.1	TIGRFAM: dethiobiotin synthase; KEGG: dde:Dde_2663 dethiobiotin synthase
YP_002435433.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dde:Dde_2664 diaminopimelate decarboxylase
YP_002435434.1	PFAM: transcriptional regulator TrmB; KEGG: dde:Dde_2665 hypothetical protein
YP_002435435.1	KEGG: dde:Dde_2667 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_002435436.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2668 peptidyl-prolyl cis-trans isomerase, FKBP-type
YP_002435437.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0886 diguanylate cyclase
YP_002435438.1	TIGRFAM: ferrous iron transporter B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transporter B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: dde:Dde_2669 ferrous iron transporter B
YP_002435439.1	PFAM: FeoA family protein; KEGG: dde:Dde_2670 ferrous iron transporter A
YP_002435440.1	KEGG: dde:Dde_2672 hypothetical protein
YP_002435441.1	PFAM: FeoA family protein; KEGG: dde:Dde_2673 ferrous ion transporter
YP_002435442.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dde:Dde_1186 M20/M25/M40 family peptidase
YP_002435443.1	KEGG: mxa:MXAN_4665 oligopeptide/dipeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA
YP_002435444.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: dde:Dde_2674 two component LuxR family transcriptional regulator
YP_002435445.1	KEGG: ddgr:GH10507-PA
YP_002435446.1	PFAM: regulatory protein LuxR; KEGG: dtni:19367
YP_002435447.1	KEGG: dol:Dole_1403 hypothetical protein
YP_002435449.1	KEGG: dol:Dole_1405 hypothetical protein
YP_002435450.1	PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dol:Dole_1406 type II and III secretion system protein
YP_002435451.1	PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: dol:Dole_1408 type II secretion system protein E
YP_002435452.1	PFAM: type II secretion system protein; KEGG: dol:Dole_1409 type II secretion system protein
YP_002435453.1	KEGG: sde:Sde_1141 MSHA pilin protein MshB
YP_002435454.1	KEGG: csc:Csac_1061 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA
YP_002435455.1	KEGG: dol:Dole_1416 hypothetical protein
YP_002435456.1	KEGG: pap:PSPA7_5191 type IV pilus modification protein PilV
YP_002435457.1	KEGG: dol:Dole_1414 hypothetical protein
YP_002435458.1	KEGG: cel:M18.1 M18.1
YP_002435459.1	PFAM: lytic transglycosylase catalytic; KEGG: sfu:Sfum_0050 lytic transglycosylase, catalytic
YP_002435460.1	PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: gsu:GSU2043 type 4 prepilin-like proteins leader peptide processing enzyme
YP_002435461.1	KEGG: sat:SYN_00125 pili retraction protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA
YP_002435462.1	KEGG: dol:Dole_1407 type II secretory pathway ATPase ExeA
YP_002435463.1	PFAM: PhoH family protein; SMART: nucleotide binding protein PINc; KEGG: dde:Dde_1059 PhoH-related protein
YP_002435464.1	TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: paa:Paes_0269 monofunctional biosynthetic peptidoglycan transglycosylase
YP_002435465.1	KEGG: trq:TRQ2_0171 hypothetical protein
YP_002435466.1	PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: dde:Dde_0675 glycine/betaine/L-proline ABC transporter periplasmic-binding protein
YP_002435467.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter permease
YP_002435468.1	KEGG: dde:Dde_0673 glycine betaine/L-proline transport ATP binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter ATPase; PFAM: CBS domain containing protein; ABC transporter related; SMART: ATPase AAA
YP_002435469.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afu:AF2409 iron-sulfur cluster binding protein
YP_002435470.1	SMART: rhodanese; KEGG: sfu:Sfum_0093 rhodanese domain protein
YP_002435471.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat
YP_002435472.1	PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: scl:sce4660 permease of the major facilitator superfamily
YP_002435473.1	PFAM: inositol monophosphatase; KEGG: azo:azo2021  inositol-1-monophosphatase
YP_002435474.1	PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1288 hypothetical protein
YP_002435475.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: lip:LI0552 signal transduction histidine kinase
YP_002435476.1	PFAM: regulatory protein TetR; KEGG: dde:Dde_1283 TetR family transcriptional regulator
YP_002435477.1	PFAM: protein of unknown function DUF1499; KEGG: syn:sll1620 hypothetical protein
YP_002435478.1	PFAM: Mg2 transporter protein CorA family protein; KEGG: gka:GK1567 transporter
YP_002435479.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: glo:Glov_0461 methyl-accepting chemotaxis sensory transducer
YP_002435480.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_002435481.1	PFAM: hemerythrin HHE cation binding domain protein; PAS fold-4 domain protein; Domain of unknown function DUF1858; KEGG: afw:Anae109_1669 hemerythrin HHE cation binding domain protein
YP_002435482.1	KEGG: dde:Dde_1322 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435484.1	PFAM: Tail Collar domain protein; KEGG: dde:Dde_1065 hypothetical protein
YP_002435485.1	KEGG: mrd:Mrad2831_3442 secretion protein HlyD family protein
YP_002435486.1	KEGG: ecv:APECO1_4050 hypothetical protein
YP_002435487.1	KEGG: dde:Dde_2545 hypothetical protein
YP_002435488.1	KEGG: dde:Dde_2546 hypothetical protein
YP_002435489.1	KEGG: fre:Franean1_1779 2-oxoglutarate dehydrogenase E2 component
YP_002435491.1	KEGG: dde:Dde_2547 hypothetical protein
YP_002435492.1	KEGG: dde:Dde_2548 hypothetical protein
YP_002435493.1	KEGG: dde:Dde_2549 hypothetical protein
YP_002435494.1	KEGG: dde:Dde_2550 hypothetical protein
YP_002435495.1	KEGG: dde:Dde_2551 hypothetical protein
YP_002435496.1	KEGG: nfa:nfa43210 hypothetical protein
YP_002435498.1	KEGG: dde:Dde_2566 dienelactone hydrolase-like
YP_002435500.1	KEGG: dde:Dde_2569 hypothetical protein
YP_002435501.1	KEGG: pla:Plav_0904 hypothetical protein
YP_002435502.1	KEGG: sit:TM1040_0800 terminase small subunit
YP_002435503.1	KEGG: dde:Dde_2564 hypothetical protein
YP_002435505.1	PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_1168 TPR repeat-containing protein
YP_002435506.1	PFAM: OmpA/MotB domain protein; KEGG: lip:LI0483 flagellar motor protein
YP_002435507.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_002435509.1	KEGG: dde:Dde_2572 hypothetical protein
YP_002435510.1	KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435511.1	KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435512.1	KEGG: sen:SACE_1344 PE-PGRS family protein
YP_002435513.1	PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dde:Dde_1155 hypothetical protein
YP_002435514.1	KEGG: dde:Dde_1156 hypothetical protein
YP_002435515.1	KEGG: dde:Dde_1157 hypothetical protein
YP_002435516.1	PFAM: peptidase S24 and S26 domain protein; KEGG: dde:Dde_1158 transcriptional regulator
YP_002435518.1	KEGG: mag:amb1841 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002435519.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mag:amb4144 response regulator
YP_002435520.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0592 glycosyltransferase-like protein
YP_002435521.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gur:Gura_2706 drug resistance transporter EmrB/QacA subfamily
YP_002435522.1	PFAM: secretion protein HlyD; KEGG: gbe:GbCGDNIH1_1724 multidrug resistance protein A
YP_002435523.1	PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0241 extracellular solute-binding protein
YP_002435524.1	KEGG: gme:Gmet_0701 cache sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; Cache type 2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002435525.1	PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: sat:SYN_01301 fog:tpr repeat protein
YP_002435526.1	KEGG: maq:Maqu_2157 hypothetical protein
YP_002435527.1	KEGG: sul:SYO3AOP1_0959 hypothetical protein
YP_002435528.1	KEGG: dde:Dde_2556 phage uncharacterized protein-like
YP_002435529.1	KEGG: dde:Dde_2557 hypothetical protein
YP_002435530.1	KEGG: lip:LI0197 similar to endo-1,4-beta-xylanase
YP_002435531.1	PFAM: sodium/calcium exchanger membrane region; KEGG: cak:Caul_2287 sodium/calcium exchanger membrane region
YP_002435532.1	KEGG: dde:Dde_1149 hypothetical protein
YP_002435533.1	KEGG: ote:Oter_4455 DsrE family protein
YP_002435535.1	KEGG: lip:LI0739 NA
YP_002435536.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; nitrate and nitrite sensing domain protein; KEGG: lip:LIC103 methyl-accepting chemotaxis protein
YP_002435537.1	PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2647 phenylacetic acid degradation-related protein
YP_002435538.1	PFAM: threonyl/alanyl tRNA synthetase SAD; KEGG: bth:BT_0566 alanyl-tRNA synthetase
YP_002435539.1	molecular chaperone
YP_002435540.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_1650 methyl-accepting chemotaxis sensory transducer
YP_002435541.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: dol:Dole_0855 sodium/hydrogen exchanger
YP_002435544.1	PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sfu:Sfum_4061 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
YP_002435545.1	TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mxa:MXAN_6868  6-pyruvoyl tetrahydrobiopterin synthase
YP_002435546.1	KEGG: met:M446_6594 radical SAM protein
YP_002435547.1	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: bra:BRADO3849  ExsB
YP_002435548.1	PFAM: FAD dependent oxidoreductase; KEGG: tpe:Tpen_1127 FAD dependent oxidoreductase
YP_002435549.1	TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpe:Tpen_1126 succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_002435550.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: gbm:Gbem_1948 YbaK/prolyl-tRNA synthetase associated region
YP_002435551.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: dde:Dde_0977 two component LuxR family transcriptional regulator
YP_002435552.1	KEGG: dde:Dde_0976 hypothetical protein
YP_002435553.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ote:Oter_3856 response regulator receiver sensor signal transduction histidine kinase
YP_002435554.1	PFAM: pseudouridine synthase; KEGG: dde:Dde_0975 pseudouridylate synthase 23S RNA-specific-like
YP_002435555.1	KEGG: dde:Dde_2062 hypothetical protein
YP_002435556.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ
YP_002435557.1	PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2716  signal transduction protein
YP_002435558.1	SMART: hypothetical protein; KEGG: dde:Dde_2717 hypothetical protein
YP_002435559.1	KEGG: dde:Dde_2718 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase
YP_002435560.1	KEGG: dde:Dde_2719 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region
YP_002435561.1	PFAM: protein of unknown function DUF370; KEGG: dde:Dde_2720 hypothetical protein
YP_002435562.1	PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: dde:Dde_2721 hypothetical protein
YP_002435563.1	KEGG: mag:amb1956 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435564.1	PFAM: SNARE associated Golgi protein; KEGG: lip:LI0705 DedA protein family
YP_002435565.1	TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3667 flavodoxin, short chain
YP_002435568.1	KEGG: mmu:13800 enabled homolog (Drosophila)
YP_002435569.1	KEGG: hmo:HM1_3016 L-lactate permease family protein
YP_002435570.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; ion transport 2 domain protein; KEGG: dol:Dole_0161 TrkA domain-containing protein
YP_002435571.1	PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_2931 protein of unknown function DUF81
YP_002435572.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: mba:Mbar_A2644 hypothetical protein
YP_002435573.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfu:Sfum_1907 LysR family transcriptional regulator
YP_002435574.1	PFAM: Domain of unkown function DUF1786  pyruvate format-lyase activating enzyme; KEGG: dde:Dde_0971 hypothetical protein
YP_002435575.1	KEGG: dde:Dde_0972 phenylacetate-CoA ligase
YP_002435576.1	PFAM: protein of unknown function DUF456; KEGG: dde:Dde_0973 hypothetical protein
YP_002435577.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_0974 RNA methyltransferase
YP_002435578.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer
YP_002435579.1	KEGG: dde:Dde_1421  PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435580.1	PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein
YP_002435581.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD
YP_002435582.1	KEGG: dde:Dde_1418 ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; SMART: ATPase AAA
YP_002435583.1	PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070  hemagglutinin/hemolysin-related protein
YP_002435584.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_3101 ABC transporter
YP_002435585.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_3102 ABC transporter
YP_002435586.1	PFAM: inner-membrane translocator; KEGG: sfu:Sfum_3103 inner-membrane translocator
YP_002435587.1	PFAM: inner-membrane translocator; KEGG: sfu:Sfum_3104 inner-membrane translocator
YP_002435588.1	PFAM: extracellular ligand-binding receptor; KEGG: sfu:Sfum_3105 extracellular ligand-binding receptor
YP_002435589.1	KEGG: bha:BH2071 hypothetical protein
YP_002435590.1	KEGG: sfu:Sfum_3176 hypothetical protein
YP_002435591.1	PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mag:amb4555 NADPH:quinone reductase and related Zn-dependent oxidoreductase
YP_002435592.1	TIGRFAM: C_GCAxxG_C_C family protein; KEGG: amt:Amet_3720 C_GCAxxG_C_C family protein
YP_002435593.1	PFAM: rhodanese; KEGG: dde:Dde_0806 rhodanese-like protein
YP_002435594.1	KEGG: dde:Dde_0805 hypothetical protein
YP_002435595.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: dde:Dde_0804 cobalamin biosynthesis protein CbiD
YP_002435596.1	TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; protein of unknown function methylase KEGG: dde:Dde_0803 precorrin-6Y C5,15-methyltransferase (decarboxylating)
YP_002435597.1	PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein
YP_002435598.1	KEGG: dde:Dde_0801 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_002435599.1	PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pna:Pnap_4517 bilirubin oxidase
YP_002435600.1	PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein
YP_002435601.1	KEGG: sfu:Sfum_0282 hypothetical protein
YP_002435602.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_002435603.1	KEGG: dde:Dde_0980 hypothetical protein
YP_002435604.1	KEGG: dde:Dde_0979 hypothetical protein
YP_002435605.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_002435606.1	PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein
YP_002435607.1	PFAM: protein of unknown function DUF191; KEGG: dde:Dde_0799 hypothetical protein
YP_002435608.1	PFAM: radical SAM protein; KEGG: dde:Dde_0798 hypothetical protein
YP_002435609.1	PFAM: radical SAM protein; KEGG: dde:Dde_0797 hypothetical protein
YP_002435610.1	PFAM: protein of unknown function DUF178; KEGG: dde:Dde_0796 hypothetical protein
YP_002435611.1	KEGG: lch:Lcho_1827 hypothetical protein
YP_002435613.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0791 hypothetical protein
YP_002435614.1	PFAM: GrpE protein; KEGG: dde:Dde_1025 heat shock protein GrpE
YP_002435615.1	TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: negative regulator of class I heat shock protein; KEGG: dde:Dde_1026 heat-inducible transcription repressor HrcA
YP_002435616.1	TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: dde:Dde_0762 dissimilatory sulfite reductase, subunit gamma
YP_002435617.1	KEGG: dde:Dde_0761 hypothetical protein
YP_002435618.1	PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0759 hypothetical protein
YP_002435619.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_0754 TRAP-type C4-dicarboxylate transporter periplasmic component-like
YP_002435620.1	PFAM: protein of unknown function DUF161; KEGG: dol:Dole_2543 hypothetical protein
YP_002435622.1	PFAM: protein of unknown function DUF81; KEGG: gme:Gmet_1097 protein of unknown function DUF81
YP_002435623.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: dde:Dde_0750 FMN-dependent family dehydrogenase
YP_002435624.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dde:Dde_0749 GntR family transcriptional regulator
YP_002435625.1	KEGG: ana:alr2112 unknown protein
YP_002435626.1	PFAM: regulatory protein ArsR; KEGG: dde:Dde_0747 ArsR family transcriptional regulator
YP_002435627.1	PFAM: CheW domain protein; KEGG: glo:Glov_1734 CheW protein
YP_002435628.1	PFAM: chemotaxis sensory transducer; KEGG: mgm:Mmc1_3308 methyl-accepting chemotaxis sensory transducer
YP_002435629.1	KEGG: dde:Dde_0743 hypothetical protein
YP_002435630.1	KEGG: dde:Dde_0323 response regulator receiver domain-containing protein
YP_002435631.1	KEGG: dde:Dde_0319 hypothetical protein
YP_002435632.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; hypothetical protein; SMART: AAA ATPase; KEGG: dde:Dde_0318 Fis family transcriptional regulator
YP_002435633.1	PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_0218 methyl-accepting chemotaxis sensory transducer
YP_002435634.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; Fe-S cluster domain protein; KEGG: dde:Dde_0719 molybdopterin-guanine dinucleotide biosynthesis protein-like
YP_002435635.1	KEGG: dde:Dde_0718 formate dehydrogenase subunit beta
YP_002435636.1	KEGG: dde:Dde_0813 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, subunit alpha; Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region
YP_002435637.1	KEGG: dde:Dde_0715 hypothetical protein
YP_002435638.1	KEGG: dde:Dde_0714 transposase
YP_002435639.1	PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_0713 hypothetical protein
YP_002435640.1	PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0712  lipoprotein
YP_002435641.1	KEGG: dde:Dde_0711 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435642.1	PFAM: response regulator receiver; sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_0710 response regulator receiver domain-containing protein
YP_002435643.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: dde:Dde_0161 LytR/AlgR family transcriptional regulator
YP_002435644.1	PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: dde:Dde_0160 ATP-binding region, ATPase-like
YP_002435645.1	PFAM: carbon starvation protein CstA; KEGG: afw:Anae109_4235 carbon starvation protein CstA
YP_002435646.1	PFAM: carbon starvation protein CstA; KEGG: gur:Gura_2790 carbon starvation protein CstA
YP_002435647.1	PFAM: carbon starvation protein CstA; KEGG: dde:Dde_0227 carbon starvation protein A
YP_002435648.1	KEGG: dde:Dde_0709 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: radical SAM domain protein; molybdenum cofactor synthesis protein; SMART: Elongator protein 3/MiaB/NifB
YP_002435649.1	KEGG: dde:Dde_0708 molybdopterin-guanine dinucleotide biosynthesis protein A
YP_002435650.1	KEGG: dde:Dde_0707 formate dehydrogenase accessory protein FdhD
YP_002435651.1	PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_0706 formate dehydrogenase formation protein FdhE
YP_002435652.1	TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; KEGG: rca:Rcas_3054 methionine-R-sulfoxide reductase
YP_002435653.1	KEGG: pin:Ping_2581 hypothetical protein
YP_002435654.1	KEGG: sfu:Sfum_4078 hypothetical protein
YP_002435655.1	PFAM: CreA family protein; KEGG: dar:Daro_1905 CreA
YP_002435656.1	KEGG: sfu:Sfum_1332 spermine synthase
YP_002435657.1	PFAM: zinc finger DksA/TraR C4-type; KEGG: glo:Glov_0401 TraR/DksA family transcriptional regulator
YP_002435658.1	PFAM: integral membrane protein TerC; KEGG: sat:SYN_01926 tellurium resistance protein
YP_002435659.1	PFAM: ferric-uptake regulator; KEGG: sfu:Sfum_1722 ferric uptake regulator, Fur family
YP_002435660.1	PFAM: catalase domain protein; KEGG: har:HEAR1200 catalase (hydroperoxidase II)
YP_002435661.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase
YP_002435662.1	KEGG: ppd:Ppro_1141 hypothetical protein
YP_002435663.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mth:MTH1567 catalytic subunit of nitrate reductase (flp)
YP_002435664.1	PFAM: D-alanine--D-alanine ligase domain protein; KEGG: sru:SRU_2197 D-alanine--D-alanine ligase
YP_002435665.1	PFAM: alpha/beta hydrolase fold; KEGG: tte:TTE2547 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily)
YP_002435666.1	PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tme:Tmel_0488 Mur ligase middle domain-containing protein
YP_002435667.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gdi:GDI3707 GGDEF family signaling protein
YP_002435668.1	PFAM: cupin; KEGG: vha:VIBHAR_02199 hypothetical protein
YP_002435669.1	KEGG: glo:Glov_0558 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435670.1	PFAM: ethanolamine ammonia-lyase light chain; KEGG: pen:PSEEN0631 ethanolamine ammonia-lyase small subunit
YP_002435671.1	PFAM: ethanolamine ammonia lyase large subunit; KEGG: psa:PST_3681 ethanolamine ammonia-lyase large subunit
YP_002435672.1	PFAM: conserved hypothetical protein; KEGG: drm:Dred_1861 conserved hypothetical protein 698
YP_002435674.1	KEGG: drm:Dred_1860 UspA domain protein
YP_002435675.1	TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: glo:Glov_1153 phosphonate ABC transporter periplasmic phosphonate-binding protein
YP_002435676.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gur:Gura_3624 integral membrane sensor signal transduction histidine kinase
YP_002435677.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: gme:Gmet_2453 two component, sigma54 specific, transcriptional regulator, Fis family
YP_002435678.1	PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: lip:LI0836 predicted transcriptional regulator
YP_002435679.1	KEGG: dde:Dde_3347 hypothetical protein
YP_002435680.1	KEGG: dde:Dde_3348 hypothetical protein
YP_002435681.1	PFAM: transposase-like Mu; KEGG: dde:Dde_3350 bacteriophage transposase A protein
YP_002435682.1	KEGG: dde:Dde_3351 bacteriophage DNA transposition B protein
YP_002435683.1	KEGG: dde:Dde_3352 hypothetical protein
YP_002435685.1	PFAM: Mu Gam family protein; KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam
YP_002435687.1	KEGG: dde:Dde_3357 hypothetical protein
YP_002435688.1	KEGG: dde:Dde_3358 hypothetical protein
YP_002435689.1	KEGG: dde:Dde_3359 hypothetical protein
YP_002435690.1	KEGG: dde:Dde_3360 DNA-binding protein
YP_002435691.1	KEGG: glo:Glov_1411 hypothetical protein
YP_002435692.1	KEGG: sgl:SG0829 hypothetical protein
YP_002435693.1	PFAM: lytic transglycosylase catalytic; KEGG: bbr:BB3638  lytic murein transglycosylase precursor
YP_002435694.1	KEGG: jan:Jann_1769 mucin-associated surface protein
YP_002435695.1	KEGG: mpa:MAP4242 hypothetical protein
YP_002435696.1	KEGG: sfu:Sfum_1873 hypothetical protein
YP_002435698.1	KEGG: dde:Dde_3371 hypothetical protein
YP_002435699.1	KEGG: dde:Dde_3372 portal protein
YP_002435700.1	KEGG: ecs:ECs3507 hypothetical protein
YP_002435701.1	PFAM: protein of unknown function DUF935; KEGG: dde:Dde_3373 hypothetical protein
YP_002435702.1	TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM:  head morphogenesis protein SPP1 gp7; KEGG: dde:Dde_3374 phage  head morphogenesis protein, SPP1 gp7
YP_002435703.1	KEGG: dde:Dde_3375 hypothetical protein
YP_002435705.1	KEGG: dde:Dde_3377 hypothetical protein
YP_002435706.1	PFAM: protein of unknown function DUF1320; KEGG: dde:Dde_3378 hypothetical protein
YP_002435707.1	TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; KEGG: dde:Dde_3379 phage virion morphogenesis ( tail completion) protein
YP_002435708.1	KEGG: dde:Dde_3380 hypothetical protein
YP_002435709.1	KEGG: eci:UTI89_C5135 hypothetical protein
YP_002435710.1	KEGG: dde:Dde_3382 hypothetical protein
YP_002435711.1	KEGG: dde:Dde_3383 hypothetical protein
YP_002435715.1	TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: sew:SeSA_A4475 tail protein
YP_002435716.1	KEGG: dde:Dde_3387 hypothetical protein
YP_002435717.1	KEGG: dde:Dde_3388 hypothetical protein
YP_002435718.1	KEGG: dde:Dde_3389 baseplate assembly protein
YP_002435719.1	KEGG: dde:Dde_3390 baseplate assembly protein
YP_002435720.1	KEGG: dde:Dde_3391 baseplate assembly protein
YP_002435721.1	KEGG: dde:Dde_3392 hypothetical protein
YP_002435722.1	KEGG: dde:Dde_3393 tail fiber protein
YP_002435723.1	KEGG: dde:Dde_3394 hypothetical protein
YP_002435724.1	KEGG: dde:Dde_3395 hypothetical protein
YP_002435725.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dde:Dde_1300 adenine specific DNA methyltransferase
YP_002435726.1	KEGG: ncr:NCU07561 hypothetical protein
YP_002435727.1	KEGG: dde:Dde_3058 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein
YP_002435728.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_002435729.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_3060 NAD-dependent epimerase/dehydratase family protein
YP_002435730.1	KEGG: dde:Dde_3758 hypothetical protein
YP_002435731.1	catalyzes the removal of amino acids from the N termini of peptides
YP_002435732.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3062 alcohol dehydrogenase, iron-containing
YP_002435733.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_1135 hypothetical protein
YP_002435734.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2953 ATPase
YP_002435735.1	PFAM: BioY protein; KEGG: dde:Dde_2954 BioY family protein
YP_002435736.1	PFAM: Lipocalin; KEGG: dde:Dde_2955 hypothetical protein
YP_002435737.1	Inhibits transcription at high concentrations of nickel
YP_002435738.1	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis
YP_002435739.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_2958 flagellar basal-body rod protein
YP_002435740.1	PFAM: Auxin Efflux Carrier; KEGG: dde:Dde_0880 hypothetical protein
YP_002435741.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: dde:Dde_2959 Fis family transcriptional regulator
YP_002435742.1	PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_2960 TPR repeat-containing protein
YP_002435743.1	PFAM: protein of unknown function DUF52; KEGG: dde:Dde_2961 hypothetical protein
YP_002435744.1	KEGG: mma:MM_1125 hypothetical protein
YP_002435745.1	KEGG: dde:Dde_2375 heavy metal-binding domain-containing protein
YP_002435746.1	KEGG: dde:Dde_2377 hypothetical protein
YP_002435747.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_002435748.1	PFAM: protein of unknown function DUF151; KEGG: dde:Dde_2379 hypothetical protein
YP_002435749.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pca:Pcar_1215 hypothetical protein
YP_002435750.1	KEGG: dde:Dde_2382 hypothetical protein
YP_002435751.1	PFAM: response regulator receiver; KEGG: dde:Dde_2384 response regulator receiver domain-containing protein
YP_002435752.1	PFAM: protein of unknown function DUF615; KEGG: dde:Dde_1395 hypothetical protein
YP_002435753.1	KEGG: dde:Dde_1393 hypothetical protein
YP_002435754.1	TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1392 4-hydroxybenzoate octaprenyltransferase
YP_002435755.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1391 metal dependent phosphohydrolase
YP_002435756.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dde:Dde_1390 molybdopterin binding domain-containing protein
YP_002435757.1	KEGG: dde:Dde_1389 hypothetical protein
YP_002435758.1	PFAM: lysine exporter (LYSE/YGGA); KEGG: dde:Dde_1388 amino acid transporter LysE
YP_002435759.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1387 ATPase
YP_002435760.1	TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_1386 amino acid ABC transporter permease
YP_002435761.1	PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_1385 extracellular solute-binding protein
YP_002435762.1	KEGG: dde:Dde_1384 hypothetical protein
YP_002435763.1	PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: dde:Dde_1382 glutamate dehydrogenase (NAD)
YP_002435764.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_002435765.1	PFAM: OstA family protein; organic solvent tolerance protein; KEGG: dde:Dde_1413 organic solvent tolerance protein
YP_002435766.1	KEGG: lip:LI0034 alanine racemase, catabolic; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein
YP_002435767.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_002435768.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_002435769.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_002435770.1	TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; KEGG: dde:Dde_1409 primary replicative DNA helicase
YP_002435771.1	PFAM: protein of unknown function DUF748; KEGG: dde:Dde_0225 hypothetical protein
YP_002435772.1	KEGG: ter:Tery_2034 RTX toxins and related Ca2+-binding protein
YP_002435773.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_002435774.1	PFAM: metallophosphoesterase; KEGG: dde:Dde_0229 hypothetical protein
YP_002435775.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dde:Dde_0230 molybdopterin molybdochelatase
YP_002435776.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1146 hypothetical protein
YP_002435777.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0879 two component Fis family transcriptional regulator
YP_002435778.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase
YP_002435779.1	KEGG: bld:BLi00801 hypothetical protein
YP_002435780.1	PFAM: conserved hypothetical protein; KEGG: dde:Dde_0876 hypothetical protein
YP_002435781.1	PFAM: ferric-uptake regulator; KEGG: dde:Dde_2676 ferric uptake regulator family protein
YP_002435782.1	PFAM: peptidase M16 domain protein; peptidase M16C associated domain protein; KEGG: dde:Dde_2677 PreP peptidase
YP_002435783.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2680 diguanylate cyclase
YP_002435784.1	KEGG: dde:Dde_2681 hypothetical protein
YP_002435785.1	PFAM: glycoside hydrolase family 13 domain protein; KEGG: dde:Dde_2682 isoamylase protein-like
YP_002435786.1	KEGG: dde:Dde_2685 hypothetical protein
YP_002435787.1	TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_2684 excisionase/Xis, DNA-binding
YP_002435788.1	TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_0703 methyl-accepting chemotaxis sensory transducer
YP_002435790.1	KEGG: rxy:Rxyl_0093 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435791.1	PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_2687 PAS/PAC sensor signal transduction histidine kinase
YP_002435792.1	TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: dde:Dde_2688 phosphomethylpyrimidine kinase
YP_002435793.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_002435794.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_002435795.1	involved in the peptidyltransferase reaction during translation
YP_002435796.1	PFAM: ribosomal protein L21; KEGG: dde:Dde_2692 50S ribosomal protein L21P
YP_002435797.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: dde:Dde_2693 glucose-1-phosphate thymidylyltransferase
YP_002435799.1	TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (uracil-5)-methyltransferase; KEGG: dde:Dde_2695 RNA methyltransferase
YP_002435800.1	KEGG: dde:Dde_2858 cytochrome C family protein
YP_002435801.1	KEGG: mbn:Mboo_0041 pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_002435802.1	KEGG: dde:Dde_2698 ATP synthase protein I
YP_002435803.1	PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein
YP_002435804.1	TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; KEGG: dde:Dde_2700 ATP synthase F0 subunit alpha
YP_002435805.1	TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dde:Dde_2701 ATP synthase F0 C subunit
YP_002435806.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_002435807.1	PFAM: protein of unknown function DUF62; KEGG: dde:Dde_2703 hypothetical protein
YP_002435808.1	PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dde:Dde_2704 cobalamin-5'-phosphate synthase
YP_002435809.1	TIGRFAM: flagellar export protein FliJ; KEGG: dde:Dde_2705  flagellar FliJ protein
YP_002435810.1	KEGG: dde:Dde_2706 hypothetical protein
YP_002435811.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_002435812.1	PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: dde:Dde_2708 flagellar motor switch protein FliM
YP_002435813.1	KEGG: dde:Dde_2710 hypothetical protein
YP_002435814.1	KEGG: dde:Dde_2711 iron-sulfur cluster-binding protein
YP_002435815.1	PFAM: ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein
YP_002435816.1	TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: dde:Dde_2713 lipoate-protein ligase B
YP_002435817.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_002435818.1	KEGG: dde:Dde_2722 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: radical SAM protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB
YP_002435819.1	PFAM: NLP/P60 protein; KEGG: dde:Dde_2724 NLP/P60 family lipoprotein
YP_002435820.1	KEGG: dde:Dde_2725 helicase RecD/TraA; TIGRFAM: helicase, RecD/TraA family; SMART: ATPase AAA
YP_002435821.1	KEGG: sat:SYN_01065 hypothetical protein
YP_002435822.1	PFAM: OmpA/MotB domain protein; KEGG: sat:SYN_01064 outer membrane protein
YP_002435823.1	PFAM: metal-dependent phosphohydrolase HD sub domain; CHASE2 domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: dar:Daro_1897 metal-dependent phosphohydrolase
YP_002435824.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_002435825.1	PFAM: UspA domain protein; KEGG: dde:Dde_2727 universal stress protein
YP_002435826.1	PFAM: shikimate kinase; KEGG: ppd:Ppro_2361 shikimate kinase II
YP_002435827.1	PFAM: aminotransferase class I and II; KEGG: dde:Dde_2730 aminotransferase
YP_002435828.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002435829.1	KEGG: dra:DR_1144 hypothetical protein
YP_002435830.1	PFAM: metalloenzyme domain protein; KEGG: dde:Dde_2732 phosphoglycerate mutase
YP_002435831.1	KEGG: paa:Paes_0502 hypothetical protein
YP_002435832.1	KEGG: eba:ebA616 hypothetical protein
YP_002435833.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; ATPase P; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY3476 hypothetical protein
YP_002435834.1	KEGG: tde:TDE0472 hypothetical protein
YP_002435835.1	KEGG: rci:RCIX1753  signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein
YP_002435836.1	PFAM: MltA domain protein; 3D domain protein; KEGG: dde:Dde_2733 transglycosylase
YP_002435837.1	PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase
YP_002435838.1	PFAM: amidohydrolase 2; KEGG: dde:Dde_2736 amidohydrolase family protein
YP_002435839.1	KEGG: dde:Dde_2962 hypothetical protein
YP_002435840.1	PFAM: amidohydrolase; amidohydrolase; KEGG: dde:Dde_2963 amidohydrolase family protein
YP_002435841.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_002435842.1	KEGG: dde:Dde_2965 dihydroorotase; TIGRFAM: dihydroorotase; PFAM: amidohydrolase
YP_002435843.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2966 HD domain-containing protein
YP_002435844.1	PFAM: acyl-ACP thioesterase; KEGG: sru:SRU_0057 acyl-ACP thioesterase superfamily
YP_002435845.1	PFAM: regulatory protein MarR; KEGG: dps:DP1862 transcriptional regulator
YP_002435846.1	PFAM: major facilitator superfamily MFS_1; KEGG: dol:Dole_1452 major facilitator transporter
YP_002435847.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_002435848.1	KEGG: dde:Dde_2972 hypothetical protein
YP_002435849.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3126 alcohol dehydrogenase, iron-containing
YP_002435850.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_2973 DNA-directed DNA polymerase
YP_002435851.1	PFAM: peptidase S24 and S26 domain protein; KEGG: dde:Dde_2974 SOS mutagenesis protein UmuD
YP_002435852.1	KEGG: dde:Dde_2975 hypothetical protein
YP_002435853.1	PFAM: regulatory protein MarR; KEGG: dde:Dde_2977 MarR family transcriptional regulator
YP_002435854.1	PFAM: protein of unknown function UPF0016; KEGG: azo:azo0370 hypothetical protein
YP_002435855.1	PFAM: GAF domain protein; KEGG: dde:Dde_3737 hypothetical protein
YP_002435856.1	KEGG: dde:Dde_3736 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_002435857.1	TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; methyltransferase type 11; KEGG: dde:Dde_2981 hemolysin A
YP_002435858.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_002435859.1	PFAM: protein of unknown function DUF1385; KEGG: dde:Dde_2983  lipoprotein
YP_002435860.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_002435861.1	TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: dde:Dde_2985 HemK family modification methylase
YP_002435862.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_002435863.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002435864.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002435865.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_002435866.1	TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: dde:Dde_2991 transcription antitermination protein NusG
YP_002435867.1	binds directly to 23S ribosomal RNA
YP_002435868.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_002435869.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_002435870.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_002435871.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_002435872.1	KEGG: dde:Dde_2998 DNA-directed RNA polymerase, acetylornithine deacetylase; TIGRFAM: DNA-directed RNA polymerase beta' subunit; PFAM: RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein
YP_002435873.1	KEGG: dde:Dde_2999 hypothetical protein
YP_002435874.1	KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435875.1	PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: dde:Dde_3001 hypothetical protein
YP_002435876.1	KEGG: dde:Dde_3002  PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; hypothetical protein; metal-dependent hydrolase HDOD; SMART: PAS domain containing protein; metal-dependent phosphohydrolase HD region
YP_002435877.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_3003 two component Fis family transcriptional regulator
YP_002435878.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_002435879.1	PFAM: hypothetical protein; response regulator receiver; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein
YP_002435880.1	PFAM: protein of unknown function DUF39; KEGG: dde:Dde_3007 hypothetical protein
YP_002435881.1	KEGG: dde:Dde_3008 hypothetical protein
YP_002435883.1	TIGRFAM: regulatory protein, FmdB family; PFAM:  regulatory protein FmdB; KEGG: dde:Dde_3010 hypothetical protein
YP_002435884.1	TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: dde:Dde_3011 adenylosuccinate lyase
YP_002435885.1	KEGG: dde:Dde_3012 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_002435886.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dde:Dde_3013 ErfK/YbiS/YcfS/YnhG family protein
YP_002435887.1	KEGG: dde:Dde_3014 hypothetical protein
YP_002435888.1	KEGG: dde:Dde_3015 hypothetical protein
YP_002435889.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_002435890.1	PFAM: flagellin domain protein; KEGG: dde:Dde_3018 flagellin N-terminal domain-containing protein
YP_002435891.1	KEGG: dre:407680 sc:d0144
YP_002435892.1	PFAM: protein of unknown function DUF486; KEGG: rsq:Rsph17025_2306 protein of unknown function DUF486
YP_002435893.1	KEGG: bur:Bcep18194_B1707 diguanylate cyclase (GGDEF domain); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002435894.1	PFAM: extracellular ligand-binding receptor; KEGG: sfu:Sfum_0378 extracellular ligand-binding receptor
YP_002435895.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: fal:FRAAL6172  GntR-family transcription regulator
YP_002435896.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fal:FRAAL0729 high-affinity branched-chain amino acid transporter (ABC superfamily, atp_bind)
YP_002435897.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_0890 ABC transporter
YP_002435898.1	PFAM: inner-membrane translocator; KEGG: gme:Gmet_1821 inner-membrane translocator
YP_002435899.1	PFAM: inner-membrane translocator; KEGG: glo:Glov_1862 inner-membrane translocator
YP_002435900.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pth:PTH_2707 anaerobic dehydrogenases
YP_002435901.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002435902.1	PFAM: GTPase EngC; KEGG: pph:Ppha_1108 GTPase EngC
YP_002435903.1	PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VF1120 acetyltransferase
YP_002435904.1	PFAM: protein of unknown function DUF1063; KEGG: dde:Dde_0807 hypothetical protein
YP_002435905.1	PFAM: lysine exporter (LYSE/YGGA); KEGG: cvi:CV_0188 homoserine/homoserine lactone efflux protein
YP_002435906.1	PFAM: cytochrome C552; KEGG: lip:LI1002 chain A, cytochrome C nitrite reductase
YP_002435907.1	KEGG: lip:LI1001 cytochrome C nitrite reductase small subunit
YP_002435908.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: lch:Lcho_4210 multi-sensor hybrid histidine kinase
YP_002435909.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: gbm:Gbem_0673  two component, sigma54 specific, transcriptional regulator, fis family
YP_002435910.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC
YP_002435911.1	PFAM: Hemolysin-type calcium-binding region; von Willebrand factor  A; KEGG: asa:ASA_1675 hemolysin-type calcium-binding repeat-containing protein
YP_002435912.1	PFAM: anaerobic cobalt chelatase; KEGG: dde:Dde_3103 cobalamin biosynthesis protein CbiK Co2+ chelatase-like
YP_002435913.1	PFAM: transporter permease; KEGG: dde:Dde_3104 iron compound ABC transporter permease
YP_002435914.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_3105 ATPase
YP_002435915.1	PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter periplasmic iron compount-binding protein
YP_002435916.1	TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3107 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase
YP_002435917.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer
YP_002435918.1	PFAM: protein of unknown function DUF330; KEGG: rsq:Rsph17025_1717 ABC-type uncharacterized transporter auxiliary component-like protein
YP_002435919.1	PFAM: hypothetical protein; KEGG: pla:Plav_2514 mammalian cell entry related domain protein
YP_002435920.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pla:Plav_2513 ABC transporter
YP_002435921.1	PFAM: protein of unknown function DUF140; KEGG: pla:Plav_2512 protein of unknown function DUF140
YP_002435923.1	PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: par:Psyc_1134 hypothetical protein
YP_002435926.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3040 two component Fis family transcriptional regulator
YP_002435927.1	KEGG: dps:DP0367 hypothetical protein
YP_002435928.1	TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: dde:Dde_2582 endoribonuclease L-PSP
YP_002435929.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1151 metal dependent phosphohydrolase
YP_002435930.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_3998 diguanylate cyclase
YP_002435931.1	PFAM: acriflavin resistance protein; KEGG: gur:Gura_2371 acriflavin resistance protein
YP_002435932.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gme:Gmet_1651 secretion protein HlyD
YP_002435933.1	PFAM: regulatory protein TetR; transcriptional regulator TetR; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator
YP_002435934.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tte:TTE0123 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, Mnhsubunit alpha
YP_002435935.1	PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: tte:TTE0124 NADH:ubiquinone oxidoreductase subunit 1 (chain H)
YP_002435936.1	PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: mbn:Mboo_0026 NADH ubiquinone oxidoreductase, 20 kDa subunit
YP_002435937.1	KEGG: csc:Csac_1537 NADH dehydrogenase (ubiquinone), 30 kDa subunit
YP_002435938.1	PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: tte:TTE0127 NADH:ubiquinone oxidoreductase 49 kD subunit 7
YP_002435939.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tte:TTE0128 formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)
YP_002435940.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: mac:MA0328 flavoredoxin
YP_002435941.1	PFAM: antibiotic biosynthesis monooxygenase; KEGG: bpd:BURPS668_1728 antibiotic biosynthesis monooxygenase family protein
YP_002435942.1	TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: mja:MJ0718 chromate resistance protein (ChrA)
YP_002435943.1	KEGG: dde:Dde_0591 hypothetical protein
YP_002435944.1	PFAM: phospholipase D/transphosphatidylase; KEGG: dde:Dde_0590 cardiolipin synthetase 2
YP_002435945.1	PFAM: UspA domain protein; KEGG: dde:Dde_0589 universal stress protein
YP_002435946.1	KEGG: mgm:Mmc1_1829 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002435948.1	TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dde:Dde_0573 carboxynorspermidine decarboxylase
YP_002435949.1	KEGG: rfr:Rfer_0025 hypothetical protein
YP_002435950.1	KEGG: xac:XAC1166 hypothetical protein
YP_002435951.1	PFAM: saccharopine dehydrogenase; KEGG: dde:Dde_0572 saccharopine dehydrogenase
YP_002435952.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_002435953.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0569 diguanylate cyclase
YP_002435954.1	PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: dde:Dde_0568 leucyl aminopeptidase
YP_002435955.1	PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: dde:Dde_1253 malate dehydrogenase
YP_002435956.1	PFAM: cation transporter; KEGG: dde:Dde_0567 TrkH family potassium uptake protein
YP_002435957.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dde:Dde_0566 potassium uptake protein TrkA
YP_002435958.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0530 hypothetical protein
YP_002435959.1	TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: nmn:NMCC_1878 RlpA-like protein precursor
YP_002435960.1	KEGG: dde:Dde_0532 response regulator receiver/GGDEF/PAS/PAC domain-containing protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002435961.1	KEGG: dde:Dde_0563 hypothetical protein
YP_002435962.1	KEGG: dde:Dde_0564 hypothetical protein
YP_002435963.1	PFAM: glycosyl transferase family 9; KEGG: dde:Dde_0565 heptosyltransferase family protein
YP_002435964.1	TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: dde:Dde_0519 lipoprotein A
YP_002435965.1	PFAM: pyruvate carboxyltransferase; KEGG: dde:Dde_0520 HMGL-like domain-containing protein
YP_002435966.1	KEGG: dde:Dde_0521 hypothetical protein
YP_002435967.1	KEGG: dde:Dde_0523 hypothetical protein
YP_002435968.1	KEGG: dde:Dde_0524 hypothetical protein
YP_002435969.1	KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type subunit alpha; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region
YP_002435970.1	KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type subunit beta; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region
YP_002435971.1	PFAM: Dissimilatory sulfite reductase D; KEGG: dde:Dde_0528 dissimilatory sulfite reductase B
YP_002435972.1	TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dde:Dde_0529 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase
YP_002435973.1	KEGG: dde:Dde_2627 hypothetical protein
YP_002435974.1	PFAM: regulatory protein MarR; KEGG: pmy:Pmen_1814 MarR family transcriptional regulator
YP_002435975.1	PFAM: sodium/sulfate symporter; citrate transporter; KEGG: mag:amb4188 di- and tricarboxylate transporters
YP_002435976.1	PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_0517 histone-like DNA-binding protein
YP_002435977.1	PFAM: histidine triad (HIT) protein; KEGG: lip:LI0430 141aa long hypothetical histidine triad nucleotide-binding protein
YP_002435978.1	PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: lip:LI0429 coproporphyrinogen III oxidase and related Fe-S oxidoreductases
YP_002435979.1	TIGRFAM: uracil-DNA glycosylase; PFAM: uracil-DNA glycosylase superfamily; KEGG: shn:Shewana3_3221 uracil-DNA glycosylase
YP_002435980.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; KEGG: dde:Dde_0513 aminotransferase
YP_002435981.1	KEGG: dde:Dde_0512 hypothetical protein
YP_002435983.1	PFAM: FAD linked oxidase; KEGG: dde:Dde_0182 D-lactate dehydrogenase (cytochrome)
YP_002435984.1	TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0183 amino acid ABC transporter permease
YP_002435985.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0184 ATPase
YP_002435986.1	TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0185 amino acid ABC transporter permease
YP_002435987.1	PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0186 extracellular solute-binding protein
YP_002435988.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: dde:Dde_0187 flavoredoxin
YP_002435989.1	KEGG: lip:LI0512 sugar transferases involved in lipopolysaccharide synthesis; TIGRFAM: undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase
YP_002435990.1	PFAM: glycosyl transferase family 9; KEGG: bxe:Bxe_A3715 hypothetical protein
YP_002435991.1	TIGRFAM: sulfate transporter; PFAM: sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: dde:Dde_2506 sulfate permease
YP_002435992.1	PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: scl:sce0089 AraC family transcriptional regulator
YP_002435993.1	KEGG: dde:Dde_3025 hypothetical protein
YP_002435995.1	PFAM: polysaccharide deacetylase; KEGG: mag:amb2885 xylanase/chitin deacetylase
YP_002435996.1	PFAM: extracellular ligand-binding receptor; KEGG: sfu:Sfum_0314 extracellular ligand-binding receptor
YP_002435997.1	PFAM: inner-membrane translocator; KEGG: sfu:Sfum_0313 inner-membrane translocator
YP_002435998.1	PFAM: inner-membrane translocator; KEGG: pth:PTH_0460 ABC-type branched-chain amino acid transporter, permeasecomponent
YP_002435999.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gsu:GSU2008 branched-chain amino acid ABC transporter ATP-binding protein
YP_002436000.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_0310 ABC transporter
YP_002436001.1	PFAM: CBS domain containing protein; KEGG: dde:Dde_0765 CBS
YP_002436002.1	PFAM: extracellular solute-binding protein family 1; KEGG: pmu:PM1457 hypothetical protein
YP_002436003.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: asu:Asuc_1717 ABC transporter
YP_002436004.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: pmu:PM1455 AfuB
YP_002436005.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: pmu:PM1454 MsmK
YP_002436006.1	PFAM: glutamine synthetase; KEGG: dde:Dde_0102 glutamine synthetaseII
YP_002436007.1	KEGG: dde:Dde_0268 hypothetical protein
YP_002436008.1	KEGG: ret:RHE_CH02651 hypothetical protein
YP_002436009.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: sfu:Sfum_0199 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_002436010.1	KEGG: ote:Oter_0744 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase subunit beta; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_002436011.1	PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dps:DP1319 NADH dehydrogenase, subunit 9
YP_002436012.1	PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: dps:DP1318 NADH dehydrogenase, subunit 7
YP_002436013.1	PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sfu:Sfum_0203 respiratory-chain NADH dehydrogenase, subunit 1
YP_002436014.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ote:Oter_0748 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_002436015.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: rrs:RoseRS_2995 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
YP_002436016.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: sfu:Sfum_0206 NADH-ubiquinone oxidoreductase, chain 4L
YP_002436017.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_002436018.1	KEGG: ote:Oter_0752 hypothetical protein
YP_002436019.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport
YP_002436020.1	KEGG: ote:Oter_0754 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_002436021.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ote:Oter_0755 proton-translocating NADH-quinone oxidoreductase, chain N
YP_002436022.1	KEGG: met:M446_0014 hypothetical protein
YP_002436023.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ppd:Ppro_3481 two component LuxR family transcriptional regulator
YP_002436024.1	PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: gme:Gmet_2788 histidine kinase
YP_002436025.1	PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1379 cytoplasmic chaperone TorD
YP_002436026.1	KEGG: sth:STH2330 anaerobic dimethyl sulfoxide reductase subunit C
YP_002436027.1	TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pac:PPA0516 anaerobic dimethyl sulfoxide reductase, chain B
YP_002436028.1	TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: apl:APL_1674 anaerobic dimethyl sulfoxide reductase chain A precursor
YP_002436029.1	PFAM: molybdopterin binding domain; formylmethanofuran dehydrogenase subunit E region; KEGG: sfu:Sfum_0032 molybdopterin binding domain
YP_002436030.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bte:BTH_I1692 AraC family transcriptional regulator
YP_002436031.1	KEGG: amt:Amet_1548 hypothetical protein
YP_002436033.1	PFAM: flagellar hook capping protein; KEGG: bph:Bphy_2950 flagellar hook capping protein
YP_002436034.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: dde:Dde_1711 flagellar hook protein FlgE
YP_002436035.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3152 flagellar hook-associated protein
YP_002436036.1	TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL
YP_002436037.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: dde:Dde_1120 flagellar hook-associated protein 2
YP_002436038.1	PFAM: flagellin domain protein; KEGG: dde:Dde_1502 flagellin
YP_002436039.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: rso:RSc2361 RNA polymerase sigma-E factor sigma-24 homolog transcription regulator protein
YP_002436040.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mca:MCA2279 DNA-binding response regulator
YP_002436041.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: scl:sce4827 hypothetical protein
YP_002436042.1	PFAM: Calcium-binding EF-hand-containing protein; KEGG: gbe:GbCGDNIH1_1190 hypothetical secreted protein
YP_002436043.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pca:Pcar_0814 outer membrane protein
YP_002436044.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: mca:MCA1810 hypothetical protein
YP_002436045.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mca:MCA1809 ABC transporter ATP-binding protein
YP_002436046.1	PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease
YP_002436047.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo2745 probable DNA-binding response regulator
YP_002436048.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: eba:ebA4466 histidine kinase-like ATPase
YP_002436049.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer
YP_002436050.1	KEGG: bav:BAV1312A phage protein
YP_002436051.1	PFAM: helix-turn-helix domain protein; KEGG: bav:BAV1312 phage DNA-binding protein
YP_002436052.1	KEGG: nmu:Nmul_A1447 hypothetical protein
YP_002436053.1	KEGG: nmu:Nmul_A1448 hypothetical protein
YP_002436054.1	KEGG: nmu:Nmul_A1449 hypothetical protein
YP_002436055.1	KEGG: mag:amb0395 hypothetical protein
YP_002436056.1	KEGG: sfu:Sfum_1892 hypothetical protein
YP_002436057.1	KEGG: sfu:Sfum_1891 phage-related protein-like
YP_002436059.1	TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein
YP_002436060.1	KEGG: pfl:PFL_3748 hypothetical protein
YP_002436061.1	PFAM: BRO domain protein; KEGG: vco:VC0395_1058 BRO family, N-domain protein
YP_002436062.1	KEGG: spz:M5005_Spy_1051 phage protein
YP_002436063.1	KEGG: hch:HCH_04547 hypothetical protein
YP_002436064.1	KEGG: bph:Bphy_7150 hypothetical protein
YP_002436065.1	KEGG: rsh:Rsph17029_3324 hypothetical protein
YP_002436067.1	TIGRFAM: phage head-tail adaptor; PFAM:  head-tail adaptor protein; KEGG: asu:Asuc_1242 phage head-tail adaptor
YP_002436068.1	KEGG: pla:Plav_0908 phage conserved hypothetical protein, phiE125 gp8
YP_002436070.1	TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: spq:SPAB_02163 hypothetical protein
YP_002436071.1	TIGRFAM: phage prohead protease HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: smd:Smed_1335 phage prohead protease HK97 family
YP_002436072.1	TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: smd:Smed_1336 phage portal protein, HK97 family
YP_002436073.1	PFAM: terminase; KEGG: bph:Bphy_7140 terminase
YP_002436074.1	KEGG: sew:SeSA_A4461  phage terminase, small subunit, P27 family
YP_002436075.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bpm:BURPS1710b_1677 GP70
YP_002436077.1	KEGG: hch:HCH_02889 hypothetical protein
YP_002436078.1	KEGG: psp:PSPPH_1890 hypothetical protein
YP_002436079.1	KEGG: mag:amb1193 hypothetical protein
YP_002436080.1	PFAM: acyltransferase 3; KEGG: pat:Patl_1185 acyltransferase 3
YP_002436082.1	PFAM: plasmid maintenance system killer; KEGG: mag:amb0661 plasmid maintenance system killer protein
YP_002436083.1	TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: mag:amb0660 plasmid maintenance system antidote protein
YP_002436084.1	KEGG: smt:Smal_2507 hypothetical protein
YP_002436086.1	KEGG: hmo:HM1_0053 hypothetical protein
YP_002436087.1	KEGG: dde:Dde_1017 hypothetical protein
YP_002436089.1	KEGG: eli:ELI_07875 hypothetical protein
YP_002436090.1	KEGG: ath:AT1G01660 U-box domain-containing protein
YP_002436092.1	PFAM: peptidase S24 and S26 domain protein; KEGG: mca:MCA2959 prophage MuMc02, S24 family peptidase
YP_002436096.1	KEGG: gsu:GSU2152 hypothetical protein
YP_002436097.1	PFAM: protein of unknown function DUF1351; KEGG: cpy:Cphy_2989 hypothetical protein
YP_002436098.1	KEGG: cel:K09A9.6 K09A9.6a
YP_002436101.1	PFAM: integrase family protein; KEGG: dde:Dde_0620 hypothetical protein
YP_002436104.1	PFAM: polysaccharide export protein; KEGG: amc:MADE_03058 capsular polysaccharide transporter
YP_002436106.1	KEGG: dde:Dde_0659 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; ATPase AAA
YP_002436107.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0657 iron-sulfur cluster-binding protein
YP_002436108.1	KEGG: sfu:Sfum_0090 cytochrome C family protein
YP_002436109.1	PFAM: cytochrome B561; KEGG: dol:Dole_3004 cytochrome b561
YP_002436110.1	PFAM: phosphoglycerate mutase; 6-phosphofructo-2-kinase; KEGG: dde:Dde_0511 6-phosphofructo-2-kinase
YP_002436111.1	KEGG: scl:sce6981 conserved carbohydrate-binding protein, rhs family
YP_002436112.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hemerythrin HHE cation binding domain protein; KEGG: dde:Dde_2814 methyl-accepting chemotaxis sensory transducer
YP_002436113.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_002436114.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0505 PAS/PAC sensor signal transduction histidine kinase
YP_002436115.1	KEGG: dde:Dde_0506 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: radical SAM protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB
YP_002436116.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_002436117.1	KEGG: dde:Dde_0508 signal peptide peptidase A; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49
YP_002436118.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cak:Caul_3208 GCN5-related N-acetyltransferase
YP_002436119.1	amylomaltase; acts to release glucose from maltodextrins
YP_002436120.1	TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: dde:Dde_0502 glutamine--fructose-6-phosphate transaminase
YP_002436121.1	PFAM: protein of unknown function UPF0118; KEGG: dde:Dde_2448 hypothetical protein
YP_002436122.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: stp:Strop_3269 CRP/FNR family transcriptional regulator
YP_002436123.1	KEGG: dau:Daud_0789 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_002436124.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dau:Daud_0788 fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_002436125.1	PFAM: protein of unknown function DUF81; KEGG: sit:TM1040_3098 protein of unknown function DUF81
YP_002436126.1	KEGG: dde:Dde_3449 hypothetical protein
YP_002436127.1	KEGG: dde:Dde_3450 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2
YP_002436128.1	PFAM: protein of unknown function Met10; SMART: PUA domain containing protein; KEGG: dde:Dde_3451 SAM-dependent methyltransferase
YP_002436129.1	PFAM: aminotransferase class V; KEGG: dde:Dde_3452 aminotransferase, class V
YP_002436130.1	PFAM: Domain of unknown function DUF1844; KEGG: dde:Dde_3453 hypothetical protein
YP_002436131.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_002436132.1	PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_3074 methyl-accepting chemotaxis sensory transducer
YP_002436133.1	KEGG: dde:Dde_3456 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_002436134.1	PFAM: EAL domain protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2343 diguanylate phosphodiesterase
YP_002436135.1	KEGG: dde:Dde_3457 phenylacetate-CoA ligase
YP_002436136.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_002436137.1	KEGG: dde:Dde_3459 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_002436138.1	PFAM: protein of unknown function UPF0150; KEGG: bpa:BPP2077 hypothetical protein
YP_002436139.1	KEGG: dde:Dde_3460 hypothetical protein
YP_002436140.1	PFAM: conserved hypothetical protein; KEGG: dde:Dde_3461 hypothetical protein
YP_002436141.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cte:CT1092 ABC transporter ATP-binding protein
YP_002436142.1	TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: dde:Dde_3464 DNA mismatch repair protein MutL
YP_002436143.1	KEGG: dde:Dde_3465  PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein
YP_002436144.1	PFAM: cytochrome C class III; KEGG: dde:Dde_3754 cytochrome C3
YP_002436145.1	KEGG: dde:Dde_3755 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_002436146.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_3756 periplasmic (NiFe) hydrogenase, large subunit, isozyme 2
YP_002436147.1	TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_3466 ADP-glyceromanno-heptose 6-epimerase precursor
YP_002436148.1	PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3467 hypothetical protein
YP_002436149.1	PFAM: tyrosine protein kinase; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: dde:Dde_3468 serine/threonine protein kinase
YP_002436150.1	PFAM: metallophosphoesterase; KEGG: dde:Dde_3469 serine/threonine protein phosphatase family protein
YP_002436151.1	KEGG: tcr:507957.200 mucin-associated surface protein (MASP),  Pfam: Prosystemin PROSITE: ALA_RICH
YP_002436152.1	PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dde:Dde_3476 isocitrate dehydrogenase (NADP)
YP_002436153.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_002436154.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_002436155.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dde:Dde_3480 phosphoribosylanthranilate isomerase
YP_002436156.1	PFAM: indole-3-glycerol phosphate synthase; KEGG: amu:Amuc_1533 indole-3-glycerol-phosphate synthase
YP_002436157.1	KEGG: amu:Amuc_1532 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like
YP_002436158.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: amu:Amuc_1532 anthranilate phosphoribosyltransferase
YP_002436159.1	PFAM: anthranilate synthase component I domain protein; chorismate binding-like; KEGG: dde:Dde_3484 anthranilate synthase, component I
YP_002436160.1	PFAM: prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; KEGG: dde:Dde_3485 prephenate dehydrogenase
YP_002436161.1	KEGG: dde:Dde_3486 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YP_002436162.1	PFAM: prephenate dehydratase; chorismate mutase; amino acid-binding ACT domain protein; KEGG: dde:Dde_3487 prephenate dehydratase
YP_002436163.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate
YP_002436164.1	catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate
YP_002436166.1	KEGG: cre:CHLREDRAFT_149776 hypothetical protein Pfam: Extensin_2 PROSITE: IG_MHC ALA_RICH
YP_002436167.1	PFAM: EAL domain protein; KEGG: pth:PTH_0666 hypothetical signaling protein
YP_002436168.1	PFAM: phosphoesterase RecJ domain protein; KEGG: dde:Dde_3494 DHH family protein
YP_002436169.1	KEGG: dde:Dde_3496 hypothetical protein
YP_002436170.1	KEGG: dde:Dde_3498 hypothetical protein
YP_002436171.1	PFAM: UvrD/REP helicase; KEGG: dde:Dde_3499 ATP-dependent DNA helicase UvrD
YP_002436172.1	KEGG: dde:Dde_3501 hypothetical protein
YP_002436173.1	KEGG: zmo:ZMO0695 hypothetical protein
YP_002436174.1	PFAM: CBS domain containing protein; chloride channel core; KEGG: dde:Dde_3504 chloride channel family protein
YP_002436175.1	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; riboflavin kinase; KEGG: dde:Dde_3505 riboflavin kinase / FMN adenylyltransferase
YP_002436176.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: ade:Adeh_2651 two component, sigma54 specific, transcriptional regulator, fis family
YP_002436177.1	PFAM: protein of unknown function DUF81; KEGG: afu:AF1561 hypothetical protein
YP_002436178.1	KEGG: afu:AF1562 hypothetical protein
YP_002436179.1	KEGG: dde:Dde_0318 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; hypothetical protein; SMART: AAA ATPase
YP_002436180.1	KEGG: dde:Dde_0319 hypothetical protein
YP_002436181.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase
YP_002436182.1	PFAM: response regulator receiver; KEGG: dde:Dde_0321 response regulator receiver domain-containing protein
YP_002436183.1	KEGG: sfu:Sfum_0655 hypothetical protein
YP_002436185.1	PFAM: response regulator receiver; KEGG: sfu:Sfum_0654 response regulator receiver protein
YP_002436186.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1360 response regulator receiver sensor signal transduction histidine kinase
YP_002436187.1	KEGG: psp:PSPPH_2344  lipoprotein
YP_002436188.1	TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_3207 acetyl-coenzyme A synthetase
YP_002436189.1	PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: dde:Dde_3208 acetyltransferase
YP_002436190.1	KEGG: psp:PSPPH_4979 prophage PSPPH06,  reverse transcriptase/maturase
YP_002436192.1	KEGG: pph:Ppha_2830 helix-turn-helix protein, CopG family
YP_002436193.1	PFAM: aldehyde dehydrogenase_; KEGG: sfu:Sfum_1087 aldehyde dehydrogenase
YP_002436194.1	PFAM: glycosyl transferase family 8; KEGG: cre:CHLREDRAFT_186791 hypothetical protein Pfam: Cu-oxidase_3 DUF246 glyco_transf_8
YP_002436195.1	stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: dde:Dde_3212 CheD, stimulates methylation of MCP proteins
YP_002436196.1	PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_3213 histone-like DNA-binding protein
YP_002436197.1	PFAM: membrane-bound metal-dependent hydrolase; KEGG: lip:LI0082 unknown conserved protein
YP_002436198.1	PFAM: protein of unknown function DUF523; protein of unknown function DUF1722; KEGG: dde:Dde_3214 hypothetical protein
YP_002436199.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_3215 HAD superfamily hydrolase
YP_002436200.1	PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein
YP_002436201.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_002436202.1	TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dde:Dde_3217 CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_002436203.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_002436204.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis
YP_002436205.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis
YP_002436206.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_002436208.1	KEGG: rci:RRC189 hypothetical protein
YP_002436209.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dde:Dde_3228 molybdopterin binding domain-containing protein
YP_002436210.1	KEGG: dde:Dde_3227 Fis family transcriptional regulator; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA
YP_002436211.1	TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: dde:Dde_3226 phage shock protein A
YP_002436212.1	TIGRFAM: phage shock protein B; KEGG: dde:Dde_3225 hypothetical protein
YP_002436213.1	TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: dde:Dde_3224 phage shock protein C
YP_002436214.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_3339 hypothetical protein
YP_002436215.1	PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_0306 hypothetical protein
YP_002436216.1	PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: sat:SYN_00591 thioredoxin peroxidase
YP_002436217.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_0304 glyoxalase family protein
YP_002436218.1	KEGG: dde:Dde_0303 MucR family transcriptional regulator
YP_002436219.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0301 hypothetical protein
YP_002436220.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0298 flagella basal body rod domain-containing protein
YP_002436221.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_002436222.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_002436223.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_002436224.1	KEGG: dde:Dde_0288 hypothetical protein
YP_002436225.1	KEGG: dde:Dde_0287 hypothetical protein
YP_002436226.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0286 ferredoxin II
YP_002436227.1	KEGG: dde:Dde_0283 hypothetical protein
YP_002436228.1	KEGG: dde:Dde_0282 hypothetical protein
YP_002436229.1	KEGG: dde:Dde_0281 chemotaxis protein CheX
YP_002436230.1	PFAM: radical SAM protein; KEGG: dde:Dde_0278 radical SAM domain-containing protein
YP_002436231.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_002436233.1	PFAM: Tir chaperone family protein; KEGG: lip:LI1032 hypothetical protein
YP_002436234.1	PFAM: aminotransferase class I and II; KEGG: dde:Dde_0276 aminotransferase, classes I and II
YP_002436235.1	KEGG: tbd:Tbd_1489 Appr-1-p processing protein
YP_002436236.1	SMART: metal-dependent phosphohydrolase HD region; KEGG: rci:RCIX977  metal-dependent phosphohydrolase (HD superfamily)
YP_002436237.1	KEGG: dde:Dde_0271 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA
YP_002436238.1	KEGG: dde:Dde_0272 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA
YP_002436239.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0273 oligopeptide/dipeptide ABC transporter permease
YP_002436240.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0274 oligopeptide/dipeptide ABC transporter permease
YP_002436241.1	PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0275 oligopeptide/dipeptide ABC transporter periplasmic oligopeptide/dipeptide-binding protein
YP_002436242.1	KEGG: dde:Dde_1808 hypothetical protein
YP_002436243.1	PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR
YP_002436244.1	PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dre:492779 zgc:101549 Pfam: DUF326 NeuB Phage_GPL SAF PROSITE: AFP_LIKE
YP_002436245.1	KEGG: ecp:ECP_3032 hypothetical protein
YP_002436246.1	PFAM: acylneuraminate cytidylyltransferase; KEGG: vvu:VV1_0803 CMP-N-acetylneuraminic acid synthetase
YP_002436247.1	KEGG: sgr:SGR_4544  methyltransferase
YP_002436248.1	TIGRFAM: methyltransferase FkbM family; PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_1576 glycosyl transferase family 2
YP_002436249.1	PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH00761  beta-glycosyltransferase protein
YP_002436250.1	PFAM: radical SAM protein; KEGG: sfu:Sfum_0802 radical SAM protein
YP_002436251.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sus:acid_0616 methyltransferase type 12
YP_002436252.1	PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: dde:Dde_0439 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
YP_002436253.1	KEGG: dde:Dde_0438 UDP-N-acetylglucosamine pyrophosphorylase related protein
YP_002436254.1	PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: dde:Dde_0431  glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC
YP_002436255.1	KEGG: dde:Dde_3249 acetyltransferase
YP_002436256.1	PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_3257 CMP-N-acetlyneuraminic acid synthetase
YP_002436257.1	PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dde:Dde_3256 N-acetylneuraminate synthase
YP_002436258.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dde:Dde_3255 UDP-N-acetylglucosamine 2-epimerase
YP_002436259.1	PFAM: polysaccharide deacetylase; KEGG: dde:Dde_3250 polysaccharide deacetylase family protein
YP_002436260.1	KEGG: dde:Dde_3251 hypothetical protein
YP_002436261.1	PFAM: radical SAM protein; KEGG: dde:Dde_3252 elongator protein 3/MiaB/NifB
YP_002436262.1	PFAM: capsule polysaccharide biosynthesis protein; KEGG: dde:Dde_3253 hypothetical protein
YP_002436263.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_3254 hypothetical protein
YP_002436264.1	PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: gbm:Gbem_3740 glycosyl transferase family 2
YP_002436265.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0428 glycosyltransferase-like protein
YP_002436266.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_0427 NAD-dependent epimerase/dehydratase family protein
YP_002436267.1	KEGG: dde:Dde_0428 glycosyltransferase-like protein
YP_002436268.1	KEGG: dde:Dde_3230 hypothetical protein
YP_002436269.1	KEGG: dde:Dde_3232 hypothetical protein
YP_002436270.1	KEGG: dde:Dde_3233 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002436271.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3234 two component Fis family transcriptional regulator
YP_002436272.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase
YP_002436273.1	PFAM: L-lactate permease; KEGG: dde:Dde_3238 L-lactate transport
YP_002436274.1	PFAM: FAD linked oxidase; KEGG: dde:Dde_3239 glycolate oxidase subunit GlcD
YP_002436275.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3240 iron-sulfur cluster-binding protein
YP_002436276.1	catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate
YP_002436277.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_002436278.1	PFAM: DRTGG domain protein; KEGG: dde:Dde_3243 hypothetical protein
YP_002436279.1	PFAM: protein of unknown function DUF162; KEGG: dde:Dde_3244 hypothetical protein
YP_002436280.1	PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein
YP_002436281.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer
YP_002436282.1	PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein
YP_002436283.1	PFAM: rhodanese; KEGG: dde:Dde_3248 rhodanese-like protein
YP_002436284.1	PFAM: acetamidase/Formamidase; KEGG: gka:GK1391 acetamidase/formamidase
YP_002436285.1	PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppd:Ppro_0838 radical SAM domain-containing protein
YP_002436286.1	KEGG: cte:CT0683 hypothetical protein
YP_002436287.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: mrd:Mrad2831_2393 PAS/PAC sensor hybrid histidine kinase
YP_002436288.1	KEGG: mpt:Mpe_A0682 hypothetical protein
YP_002436289.1	PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_2562 hemerythrin HHE cation binding domain protein
YP_002436290.1	PFAM: regulatory protein LuxR; KEGG: swo:Swol_1080 ATP-dependent transcriptional regulator-like protein
YP_002436291.1	TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bav:BAV1572 autotransporter
YP_002436292.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer
YP_002436293.1	with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit
YP_002436294.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: azo:azo1034 acetolactate synthase catalytic subunit
YP_002436295.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein
YP_002436296.1	PFAM: conserved hypothetical protein; KEGG: pap:PSPA7_5649 hypothetical protein
YP_002436297.1	PFAM: HesB/YadR/YfhF-family protein; KEGG: dde:Dde_2018 HesB-like domain-containing protein
YP_002436298.1	PFAM: glycosyl transferase family 2; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein
YP_002436299.1	PFAM: methyladenine glycosylase; KEGG: dde:Dde_3701 DNA-3-methyladenine glycosylase I
YP_002436300.1	KEGG: dde:Dde_3700 hypothetical protein
YP_002436301.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: lbl:LBL_1166 alcohol dehyodrogenase
YP_002436302.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: lic:LIC12168 aspartate aminotransferase
YP_002436303.1	KEGG: hch:HCH_05265 CMP-N-acetylneuraminic acid synthetase
YP_002436304.1	PFAM: acylneuraminate cytidylyltransferase; KEGG: lbl:LBL_1169 cytidylyltransferase
YP_002436305.1	PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: lbl:LBL_1168 N-acetylneuraminic acid (sialic acid) synthetase
YP_002436306.1	KEGG: mag:amb0137 hypothetical protein
YP_002436307.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: amu:Amuc_0639 transferase hexapeptide repeat containing protein
YP_002436308.1	PFAM: polysaccharide biosynthesis protein; KEGG: dar:Daro_1251 polysaccharide biosynthesis protein
YP_002436309.1	PFAM: HpcH/HpaI aldolase; KEGG: dde:Dde_3685 HPCH/HPAI aldolase family protein
YP_002436310.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_3686 NAD-dependent epimerase/dehydratase family protein
YP_002436311.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_002436312.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: dde:Dde_3688 acetyltransferase
YP_002436313.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_3689 D-isomer specific 2-hydroxyacid dehydrogenase family protein
YP_002436314.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_3690 HAD superfamily hydrolase
YP_002436315.1	KEGG: lbl:LBL_1208 hypothetical protein
YP_002436316.1	PFAM: sulfatase; KEGG: pen:PSEEN4076 hypothetical protein
YP_002436317.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dde:Dde_3693 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis-like
YP_002436318.1	KEGG: dde:Dde_2558 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002436319.1	TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: nucleotidyl transferase; KEGG: dde:Dde_3694 glucose-1-phosphate cytidylyl-transferase
YP_002436320.1	TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: dde:Dde_3695 CDP-glucose-4,6-dehydratase
YP_002436321.1	KEGG: dde:Dde_3696 polysaccharide biosynthesis domain-containing protein
YP_002436322.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dde:Dde_3697 aminotransferase
YP_002436323.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3698 glycosyl transferase, group 2 family protein
YP_002436324.1	KEGG: dde:Dde_1495 hypothetical protein
YP_002436325.1	PFAM: protein of unknown function DUF939; KEGG: dde:Dde_0097 hypothetical protein
YP_002436326.1	KEGG: pnu:Pnuc_1322 hypothetical protein
YP_002436327.1	PFAM: zinc/iron permease; KEGG: cbf:CLI_1259 zinc transporter ZIP family
YP_002436328.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; ATPase P; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: amu:Amuc_1839 ATPase P
YP_002436329.1	PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_0168 extracellular solute-binding protein
YP_002436330.1	TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0167 amino acid ABC transporter permease
YP_002436331.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0166 ATPase
YP_002436332.1	TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; helix-hairpin-helix motif; HhH-GPD family protein; KEGG: dde:Dde_0212 A/G-specific DNA-adenine glycosylase
YP_002436333.1	KEGG: rxy:Rxyl_1043 hypothetical protein
YP_002436334.1	PFAM: glycosyl transferase family 2; KEGG: reu:Reut_A2635 glycosyl transferase, family 2
YP_002436335.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0213 ATPase
YP_002436336.1	PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein
YP_002436337.1	PFAM: zinc finger DksA/TraR C4-type; KEGG: wsu:WS2102 hypothetical protein
YP_002436338.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0215 glycosyl transferase, group 2 family protein
YP_002436339.1	PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_0216 UDP-galactopyranose mutase
YP_002436340.1	PFAM: creatinase; peptidase M24; KEGG: dde:Dde_0217 M24 family peptidase
YP_002436341.1	PFAM: protein of unknown function DUF336; KEGG: dsy:DSY4743 hypothetical protein
YP_002436342.1	TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: drm:Dred_2756 TRAP dicarboxylate transporter DctM subunit
YP_002436343.1	TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: drm:Dred_2757 TRAP dicarboxylate transporter DctP subunit
YP_002436344.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; ATPase AAA; KEGG: cbe:Cbei_3352 sigma54 specific transcriptional regulator, fis family
YP_002436345.1	catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source
YP_002436346.1	KEGG: dde:Dde_0181 hypothetical protein
YP_002436347.1	PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: dde:Dde_0179 deoxyribodipyrimidine photo-lyase type II
YP_002436348.1	PFAM: response regulator receiver; KEGG: dde:Dde_0178 response regulator receiver domain-containing protein
YP_002436349.1	KEGG: dde:Dde_0177 DNA polymerase III delta prime subunit
YP_002436350.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_002436351.1	PFAM: lytic transglycosylase catalytic; KEGG: dde:Dde_0175 transglycosylase SLT domain-containing protein
YP_002436352.1	KEGG: lip:LI0201 hypothetical protein
YP_002436353.1	PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase
YP_002436354.1	PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein
YP_002436355.1	PFAM: protein of unknown function DUF205; KEGG: dde:Dde_0172 acyl-phosphate glycerol-3-phosphate acyltransferase
YP_002436356.1	KEGG: dde:Dde_0171 L-threonine synthase; TIGRFAM: threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit
YP_002436357.1	PFAM: MGS domain protein; KEGG: dde:Dde_0377 phosphoribosylaminoimidazolecarboxamide formyltransferase
YP_002436358.1	TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: dde:Dde_0376 GTP-binding protein HflX
YP_002436359.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: dde:Dde_0374 rhodanese-like protein
YP_002436360.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: amr:AM1_C0051 DUF6 domain transmembrane protein
YP_002436361.1	TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pde:Pden_4239 methylated-DNA--protein-cysteine methyltransferase
YP_002436363.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein
YP_002436364.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_2459 ThiF protein
YP_002436365.1	KEGG: pth:PTH_1468 hypothetical protein
YP_002436366.1	PFAM: thiamineS protein; KEGG: dde:Dde_2458 hypothetical protein
YP_002436367.1	PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; KEGG: pth:PTH_2604 aldehyde:ferredoxin oxidoreductase
YP_002436368.1	PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_3673 polyamine ABC transporter periplasmic polyamine-binding protein
YP_002436369.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component
YP_002436370.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lip:LI0830 ABC-type spermidine/putrescine transport system, permease I
YP_002436371.1	functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase
YP_002436372.1	PFAM: polysaccharide deacetylase; KEGG: gme:Gmet_2850 polysaccharide deacetylase
YP_002436373.1	TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate/quinate 5-dehydrogenase; shikimate dehydrogenase substrate binding domain protein; KEGG: dde:Dde_3564 shikimate dehydrogenase
YP_002436374.1	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors
YP_002436375.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_002436376.1	PFAM: class II aldolase/adducin family protein; protein of unknown function UPF0066; KEGG: dde:Dde_3569 hypothetical protein
YP_002436377.1	KEGG: dde:Dde_3570 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_002436378.1	PFAM: UvrD/REP helicase; KEGG: dde:Dde_3571 ATP-dependent DNA helicase UvrD
YP_002436379.1	PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein
YP_002436380.1	TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: gsu:GSU1550 4-oxalocrotonate tautomerase family protein
YP_002436381.1	KEGG: dde:Dde_3573 hypothetical protein
YP_002436382.1	KEGG: psa:PST_3745 CRISPR-associated helicase Cas3 domain protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases
YP_002436383.1	TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: psa:PST_3746 CRISPR-associated protein, CT1134 family
YP_002436384.1	TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133; KEGG: xom:XOO_0796 hypothetical protein
YP_002436385.1	TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: gme:Gmet_1067 CRISPR-associated TM1801 family protein
YP_002436386.1	TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: cph:Cpha266_1432 CRISPR-associated protein Cas4
YP_002436387.1	TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: sat:SYN_02473 hypothetical cytosolic protein
YP_002436388.1	TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: gdi:GDI0058 hypothetical protein
YP_002436390.1	KEGG: sus:acid_7821 helix-hairpin-helix repeat-containing competence protein ComEA
YP_002436391.1	KEGG: sus:acid_6343 hypothetical protein
YP_002436392.1	PFAM: rubrerythrin; ferritin; KEGG: dde:Dde_0133 bacterioferritin
YP_002436393.1	KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002436394.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hmo:HM1_1613 phosphoglycolate phosphatase
YP_002436395.1	PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0644 protein of unknown function DUF81
YP_002436396.1	KEGG: sfu:Sfum_0645 hypothetical protein
YP_002436397.1	PFAM: manganese and iron superoxide dismutase; KEGG: nmu:Nmul_A0501 superoxide dismutase
YP_002436398.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase
YP_002436399.1	PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein
YP_002436400.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0617 integral membrane sensor signal transduction histidine kinase
YP_002436401.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase
YP_002436402.1	PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein
YP_002436403.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0642 integral membrane sensor signal transduction histidine kinase
YP_002436404.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sfu:Sfum_0643 two component, sigma54 specific, transcriptional regulator, fis family
YP_002436405.1	PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: csa:Csal_1764 transcriptional regulator, GntR family
YP_002436406.1	PFAM: malate/L-lactate dehydrogenase; KEGG: mrd:Mrad2831_5976 malate/L-lactate dehydrogenase
YP_002436407.1	PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer
YP_002436408.1	KEGG: mta:Moth_1926 hypothetical protein
YP_002436409.1	KEGG: dsy:DSY3247 hypothetical protein
YP_002436410.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: dsy:DSY3248 hypothetical protein
YP_002436411.1	KEGG: dsy:DSY3247 hypothetical protein
YP_002436412.1	PFAM: protein of unknown function DUF112 transmembrane; KEGG: dsy:DSY3248 hypothetical protein
YP_002436413.1	PFAM: conserved hypothetical protein; KEGG: dsy:DSY3249 hypothetical protein
YP_002436414.1	PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase
YP_002436415.1	KEGG: csa:Csal_1765 D-galactarate dehydratase/altronate hydrolase-like protein
YP_002436416.1	PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase
YP_002436417.1	KEGG: csa:Csal_1765 D-galactarate dehydratase/altronate hydrolase-like protein
YP_002436418.1	KEGG: dde:Dde_0387 hypothetical protein
YP_002436419.1	KEGG: dde:Dde_0386 hypothetical protein
YP_002436420.1	PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_0385 flagellar basal body-associated protein
YP_002436421.1	PFAM: response regulator receiver; KEGG: dde:Dde_0384 response regulator receiver domain-containing protein
YP_002436422.1	KEGG: dde:Dde_0383 sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2
YP_002436423.1	PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0382 flagellar synthesis regulator FleN
YP_002436424.1	KEGG: dde:Dde_0381 flagellar biosynthesis protein FlhF
YP_002436425.1	membrane protein involved in the flagellar export apparatus
YP_002436426.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_002436427.1	TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: dde:Dde_0378 flagellar biosynthetic protein FliR
YP_002436428.1	TIGRFAM: sulfate transporter; PFAM: sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: mgm:Mmc1_1638 sulfate transporter
YP_002436429.1	KEGG: dde:Dde_0388 hypothetical protein
YP_002436430.1	PFAM: dihydrouridine synthase; KEGG: dde:Dde_0389 dihydrouridine synthase family protein
YP_002436431.1	KEGG: dde:Dde_0390 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein
YP_002436432.1	PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_0391 response regulator receiver (CheY-like) modulated CheW protein
YP_002436433.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: gbm:Gbem_0222 GntR family transcriptional regulator with aminotransferase domain
YP_002436434.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: gbm:Gbem_0223 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_002436435.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: dde:Dde_0120 ribosomal large subunit pseudouridine synthase C
YP_002436436.1	KEGG: dde:Dde_0121 hypothetical protein
YP_002436437.1	PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein
YP_002436438.1	PFAM: inositol monophosphatase; KEGG: dde:Dde_0123 3'(2'),5'-bisphosphate nucleotidase
YP_002436439.1	PFAM: NLP/P60 protein; KEGG: sfu:Sfum_2195 NLP/P60 protein
YP_002436440.1	PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_0125 histone-like DNA-binding protein
YP_002436441.1	KEGG: dde:Dde_0126 MerR family transcriptional regulator
YP_002436442.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_002436443.1	KEGG: dde:Dde_0114 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase AAA
YP_002436444.1	PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0115 cell division protein FtsX
YP_002436445.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_002436446.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_002436447.1	PFAM: UbiE/COQ5 methyltransferase; methionine biosynthesis MetW protein; methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_0009 hypothetical protein
YP_002436448.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_002436449.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_002436450.1	KEGG: dde:Dde_0013 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_002436451.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: dde:Dde_0014 methionyl-tRNA formyltransferase
YP_002436452.1	PFAM: protein of unknown function DUF116; KEGG: dde:Dde_0015 hypothetical protein
YP_002436453.1	PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dde:Dde_0017 sun protein
YP_002436454.1	KEGG: sfu:Sfum_2138 hypothetical protein
YP_002436455.1	PFAM: PfkB domain protein; KEGG: dde:Dde_0028 D-alpha,beta-D-heptose 7-phosphate 1-kinase
YP_002436456.1	TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dde:Dde_0029 chromosome segregation DNA-binding protein
YP_002436457.1	KEGG: dde:Dde_0030 hypothetical protein
YP_002436458.1	PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0031 chromosome segregation ATPase
YP_002436459.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_0033 NAD-dependent epimerase/dehydratase family protein
YP_002436460.1	PFAM: band 7 protein; KEGG: dde:Dde_0036 SPFH domain-containing protein/band 7 family protein
YP_002436461.1	KEGG: dde:Dde_0038 hypothetical protein
YP_002436462.1	TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: dde:Dde_0039 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase
YP_002436463.1	KEGG: lip:LI0583 hypothetical protein
YP_002436464.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_002436465.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, delta subunit
YP_002436466.1	catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA
YP_002436467.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta
YP_002436468.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, subunit gamma
YP_002436469.1	KEGG: rec:RHECIAT_CH0003310  superfamily I DNA and RNA helicase protein
YP_002436470.1	KEGG: mmw:Mmwyl1_1978 hypothetical protein
YP_002436471.1	PFAM: small multidrug resistance protein; KEGG: dde:Dde_2406 SMR family multidrug efflux pump
YP_002436472.1	PFAM: small multidrug resistance protein; KEGG: dde:Dde_2405 SMR family multidrug efflux pump
YP_002436473.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_2109 ABC transporter
YP_002436474.1	PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_1553 protein of unknown function DUF214
YP_002436475.1	KEGG: gbm:Gbem_1096 hypothetical protein
YP_002436476.1	TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dde:Dde_0414 hypothetical protein
YP_002436477.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: sfu:Sfum_3773 heavy metal translocating P-type ATPase
YP_002436478.1	KEGG: dde:Dde_0108 hypothetical protein
YP_002436479.1	PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_0107  lipoprotein
YP_002436480.1	KEGG: dde:Dde_0106 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein
YP_002436481.1	KEGG: pfl:PFL_0783 pesticin domain-containing protein
YP_002436484.1	KEGG: dac:Daci_0170  Fe-S oxidoreductase
YP_002436485.1	PFAM: glycosyl transferase family 2; KEGG: chy:CHY_2608 glycosyl transferase
YP_002436486.1	TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; fumarate hydratase class II; KEGG: dde:Dde_0240 fumarate hydratase
YP_002436487.1	PFAM: GPR1/FUN34/yaaH family protein; KEGG: dde:Dde_0237 Gpr1/Fun34/YaaH family protein
YP_002436488.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0210 AhpF family protein/thioredoxin reductase
YP_002436489.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dde:Dde_0209 peptidylprolyl isomerase
YP_002436490.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: dde:Dde_0236 hypothetical protein
YP_002436491.1	PFAM: peptidase M23; KEGG: dde:Dde_3784 M24/M37 family peptidase
YP_002436492.1	KEGG: dde:Dde_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: replication initiation factor DnaA; Chromosomal replication initiator DnaA; SMART: ATPase AAA
YP_002436493.1	KEGG: dde:Dde_0002 DNA polymerase III beta subunit; TIGRFAM: DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain
YP_002436494.1	KEGG: dde:Dde_0003 DNA gyrase subunit B; TIGRFAM: DNA gyrase subunit beta; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; DNA topoisomerase type IIsubunit alpha B region 2 domain protein; SMART: DNA topoisomerase II
YP_002436495.1	KEGG: dde:Dde_0004 DNA gyrase subunit A; TIGRFAM: DNA gyrase subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller
YP_002436496.1	KEGG: dde:Dde_0005  lipoprotein
YP_002436497.1	PFAM: UspA domain protein; KEGG: dde:Dde_0098 universal stress protein
YP_002436498.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002436499.1	KEGG: dde:Dde_0885 hypothetical protein
YP_002436500.1	PFAM: rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3337 nigerythrin
YP_002436501.1	KEGG: gsu:GSU0757  lipoprotein
YP_002436502.1	KEGG: gur:Gura_2632 hypothetical protein
YP_002436503.1	PFAM: conserved hypothetical protein; KEGG: drm:Dred_1452 conserved hypothetical protein 698
YP_002436504.1	KEGG: bbt:BBta_2157 hypothetical protein
YP_002436505.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase
YP_002436506.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0879 two component Fis family transcriptional regulator
YP_002436508.1	PFAM: NADPH-dependent FMN reductase; KEGG: mba:Mbar_A2580 iron-sulfur flavoprotein
YP_002436509.1	PFAM: major facilitator superfamily MFS_1; KEGG: mba:Mbar_A3306 efflux PumP antibiotic resistance protein
YP_002436510.1	TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: dde:Dde_0104 L-glutamine synthetase
YP_002436511.1	KEGG: ang:An12g06380 hypothetical protein Pfam: Collagen PROSITE: ALA_RICH ASP_RICH GLY_RICH SER_RICH
YP_002436512.1	PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_3407 major facilitator transporter
YP_002436513.1	PFAM: UspA domain protein; KEGG: tbd:Tbd_2614 universal stress protein
YP_002436514.1	PFAM: protein of unknown function DUF81; KEGG: tbd:Tbd_2613 hypothetical protein
YP_002436515.1	KEGG: tbd:Tbd_2612 hypothetical protein
YP_002436516.1	KEGG: tbd:Tbd_2614 universal stress protein
YP_002436518.1	KEGG: dola:16964; PFAM: response regulator receiver; AAA ATPase central domain protein; peptidase S16; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA
YP_002436519.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dol:Dole_2392 histidine kinase
YP_002436520.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: mxa:MXAN_2516 sigma-54 dependent DNA-binding response regulator
YP_002436521.1	KEGG: dde:Dde_3778 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA
YP_002436522.1	KEGG: dde:Dde_0060 hypothetical protein
YP_002436523.1	PFAM: ADP-ribosylation/crystallin J1; KEGG: dde:Dde_0059 ADP-ribosylglycohydrolase family protein
YP_002436525.1	PFAM:  rRNA methylase; KEGG: dde:Dde_0095 methyltransferase ()
YP_002436526.1	KEGG: dde:Dde_0096 hypothetical protein
YP_002436527.1	KEGG: lxx:Lxx18120 two-component system, regulatory protein
YP_002436528.1	PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3772 hypothetical protein
YP_002436529.1	KEGG: dde:Dde_3773 hypothetical protein
YP_002436530.1	KEGG: dde:Dde_3774 hypothetical protein
YP_002436531.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3775 ferredoxin I
YP_002436532.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_3776 PDZ/DHR/GLGF
YP_002436533.1	KEGG: dde:Dde_3777 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
YP_002436534.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_002436535.1	PFAM: lysine exporter (LYSE/YGGA); KEGG: dde:Dde_3475 L-lysine exporter
YP_002436536.1	PFAM: helicase; DbpA RNA-binding domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases; KEGG: dde:Dde_0152 DEAD/DEAH box helicase-like
YP_002436537.1	PFAM: excinuclease ABC C subunit domain protein; KEGG: pnu:Pnuc_0446 excinuclease ABC subunit C
YP_002436538.1	KEGG: dde:Dde_0151 metallo-beta-lactamase family protein
YP_002436539.1	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: dde:Dde_0150 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YP_002436540.1	TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: chy:CHY_0431 L-lactate/glycolate permease
YP_002436541.1	PFAM: lysine exporter (LYSE/YGGA); KEGG: pau:PA14_69310 LysE family efflux protein
YP_002436542.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_002436543.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_002436544.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_3782 multi-sensor signal transduction histidine kinase
YP_002436545.1	KEGG: dde:Dde_3779 MerR family transcriptional regulator
YP_002436546.1	TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_3447 TRAP dicarboxylate transporter DctP subunit
YP_002436547.1	PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pde:Pden_3481 tripartite ATP-independent periplasmic transporter DctQ component
YP_002436548.1	TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: bbr:BB1744 hypothetical protein
YP_002436549.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: npu:Npun_F4963 transcriptional regulator, LysR family
YP_002436551.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: dde:Dde_1618 flavodoxin-like fold domain-containing protein
YP_002436552.1	PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase
YP_002436553.1	KEGG: dde:Dde_0057 dihydroorotate oxidase B, electron transfer subunit
YP_002436554.1	TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: dde:Dde_0056 dihydroorotate oxidase B, catalytic subunit
YP_002436555.1	PFAM: GCN5-related N-acetyltransferase; KEGG: mbb:BCG_0971 hypothetical protein
YP_002436556.1	PFAM: protein of unknown function DUF1778; KEGG: neu:NE1104 hypothetical protein
YP_002436557.1	TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; aldehyde dehydrogenase_; KEGG: dde:Dde_0054 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase
YP_002436558.1	KEGG: dde:Dde_0111 zinc resistance-associated protein
YP_002436559.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_0110 multi-sensor signal transduction histidine kinase
YP_002436560.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0109 two component Fis family transcriptional regulator
YP_002436561.1	PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_3636 glycosyl transferase
YP_002436562.1	PFAM: lysine exporter (LYSE/YGGA); KEGG: rru:Rru_A2130 lysine exporter protein (LysE/YggA)
YP_002436563.1	PFAM: thioesterase superfamily protein; KEGG: rci:LRC474  phenylacetic acid degradation protein
YP_002436564.1	KEGG: dde:Dde_1552 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: ATPase AAA
YP_002436565.1	TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dde:Dde_1553 L-alanine dehydrogenase
YP_002436566.1	PFAM: ABC transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter
YP_002436567.1	PFAM: ABC transporter; ABC-2 type transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_2391 ABC transporter
YP_002436568.1	PFAM: secretion protein HlyD; KEGG: rpc:RPC_3037 secretion protein HlyD
YP_002436569.1	PFAM: regulatory protein TetR; transcriptional regulator TetR; KEGG: pfl:PFL_5951 TetR family transcriptional regulator
YP_002436570.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_2809 RND efflux system, outer membrane lipoprotein, NodT family
YP_002436572.1	PFAM: regulatory protein MarR; KEGG: psp:PSPPH_1519 MarR family transcriptional regulator
YP_002436573.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cvi:CV_0433 outer membrane efflux protein
YP_002436574.1	TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cvi:CV_0434 acriflavin resistance protein D
YP_002436575.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cvi:CV_0435 multidrug efflux membrane permease
YP_002436576.1	PFAM: regulatory protein TetR; transcriptional regulator TetR; KEGG: sfu:Sfum_3173 TetR family transcriptional regulator
YP_002436577.1	PFAM: protein of unknown function DUF169; KEGG: glo:Glov_1444 protein of unknown function DUF169
YP_002436578.1	PFAM: regulatory protein MarR; KEGG: dsy:DSY3432 hypothetical protein
YP_002436579.1	PFAM: zinc finger DksA/TraR C4-type; KEGG: dde:Dde_3660 TraR/DksA family transcriptional regulator
YP_002436580.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: dde:Dde_3661 phospholipid/glycerol acyltransferase
YP_002436581.1	PFAM: protein of unknown function DUF523; KEGG: dde:Dde_3662 hypothetical protein
YP_002436582.1	KEGG: dde:Dde_3664 hypothetical protein
YP_002436583.1	PFAM: DSBA oxidoreductase; KEGG: dde:Dde_0163 DsbA-like thioredoxin domain-containing protein
YP_002436584.1	PFAM: branched-chain amino acid transport; KEGG: dde:Dde_0159 hypothetical protein
YP_002436585.1	PFAM: AzlC family protein; KEGG: dde:Dde_0158 AzlC family protein
YP_002436586.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dde:Dde_0157 GntR family transcriptional regulator
YP_002436587.1	KEGG: dde:Dde_0093 hypothetical protein
YP_002436588.1	PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_0092 hydantoinase/oxoprolinase family protein
YP_002436589.1	TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: asa:ASA_3792 chaperone CsaA
YP_002436590.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sfu:Sfum_1190 methyltransferase type 11
YP_002436591.1	PFAM: beta-lactamase; flavodoxin/nitric oxide synthase; KEGG: ppd:Ppro_3699 hypothetical protein
YP_002436592.1	PFAM: heat shock protein Hsp20; KEGG: rca:Rcas_4342 heat shock protein HSP20
YP_002436593.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer
YP_002436594.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_002436595.1	KEGG: mgr:MGG_14155 hypothetical protein
YP_002436596.1	PFAM: ThiJ/PfpI domain protein; KEGG: bbr:BB3066 hypothetical protein
YP_002436597.1	PFAM: Dual specificity protein phosphatase; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase
YP_002436598.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_0604 pyruvate,water dikinase
YP_002436599.1	PFAM: response regulator receiver; KEGG: dde:Dde_0603 response regulator receiver domain-containing protein
YP_002436600.1	KEGG: dde:Dde_0602 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002436601.1	TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: dde:Dde_0601 phosphonate-binding periplasmic protein
YP_002436602.1	KEGG: dde:Dde_0600 hypothetical protein
YP_002436603.1	PFAM: protein of unknown function DUF81; KEGG: dde:Dde_0598 hypothetical protein
YP_002436604.1	PFAM: protein of unknown function DUF169; KEGG: dde:Dde_0597 hypothetical protein
YP_002436605.1	PFAM: permease; KEGG: hau:Haur_1694 permease
YP_002436606.1	KEGG: mmc:Mmcs_2996 hypothetical protein
YP_002436607.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase; KEGG: dde:Dde_3604 oxidoreductase
YP_002436608.1	PFAM: protein of unknown function DUF805; KEGG: chu:CHU_1014  cytochrome
YP_002436609.1	PFAM: helicase; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: dde:Dde_3603 DEAD/DEAH box helicase-like
YP_002436610.1	KEGG: cel:E03H12.5 E03H12.5
YP_002436611.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: lip:LI0877 response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
YP_002436612.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3598 periplasmic sensor signal transduction histidine kinase
YP_002436613.1	PFAM: phosphoglucose isomerase (PGI); KEGG: dde:Dde_3597 glucose-6-phosphate isomerase
YP_002436615.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: dde:Dde_3596 L-aspartate aminotransferase
YP_002436616.1	PFAM: sugar fermentation stimulation protein; KEGG: dde:Dde_3594 sugar fermentation stimulation protein
YP_002436617.1	KEGG: dde:Dde_3593 hypothetical protein
YP_002436618.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_002436619.1	PFAM: alanine racemase domain protein; KEGG: dde:Dde_3590 hypothetical protein
YP_002436620.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA
YP_002436621.1	PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3588 OmpA family protein
YP_002436622.1	PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3587 chemotaxis protein MotB
YP_002436623.1	PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_3586 flagellar protein FliL
YP_002436624.1	TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dde:Dde_3585 surface presentation of antigens (SpoA) protein
YP_002436625.1	PFAM: flagellar biosynthesis protein FliO; KEGG: dde:Dde_3584 flagellar biosynthesis protein, FliO
YP_002436626.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_002436627.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: dde:Dde_3582 flagellar biosynthetic protein FliQ
YP_002436628.1	PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dde:Dde_3581 RNA methyltransferase TrmH, group 3
YP_002436629.1	PFAM: peptidoglycan-binding LysM; lytic transglycosylase catalytic; KEGG: dde:Dde_3580 peptidoglycan-binding LysM
YP_002436630.1	PFAM: nuclease (SNase domain protein); KEGG: dol:Dole_2932 nuclease
YP_002436631.1	PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_0413  acyl-CoA thioesterase precursor
YP_002436632.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0412 ATPase
YP_002436633.1	PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0411 hypothetical protein
YP_002436634.1	PFAM: diacylglycerol kinase; KEGG: har:HEAR0819 diacylglycerol kinase
YP_002436635.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002436636.1	KEGG: dde:Dde_0197 hypothetical protein
YP_002436637.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_0203 hypothetical protein
YP_002436638.1	PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_0204 hypothetical protein
YP_002436639.1	PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 SecC motif-containing protein
YP_002436640.1	KEGG: dde:Dde_0075 hypothetical protein
YP_002436641.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dde:Dde_0074 TatD-related deoxyribonuclease
YP_002436642.1	PFAM: protein of unknown function DUF309; KEGG: gsu:GSU1664 hypothetical protein
YP_002436643.1	KEGG: dde:Dde_3029 carbon monoxide dehydrogenase accessory protein CooC
YP_002436644.1	KEGG: dde:Dde_3028 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane
YP_002436645.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dde:Dde_3027 Crp/FNR family transcriptional regulator
YP_002436646.1	KEGG: dde:Dde_0076 translation initiation factor 2B subunit I; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related
YP_002436647.1	PFAM: isochorismatase hydrolase; KEGG: sfu:Sfum_3430 isochorismatase hydrolase
YP_002436648.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_002436649.1	PFAM: Tir chaperone family protein; KEGG: eta:ETA_05380 potential ORFB-specific chaperone, encodes a homolog of virulence/avirulence effector proteins secreted via the type III pathway
YP_002436651.1	KEGG: hch:HCH_03629 hypothetical protein
YP_002436652.1	TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transporter; xanthine/uracil/vitamin C permease; KEGG: bcm:Bcenmc03_2357 benzoate transporter
YP_002436653.1	PFAM: metal-dependent hydrolase HDOD; KEGG: gsu:GSU2576 HD domain-containing protein
YP_002436654.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0193 AMP-binding enzyme family protein
YP_002436655.1	PFAM: stress responsive alpha-beta barrel domain protein; KEGG: dde:Dde_0194 hypothetical protein
YP_002436656.1	PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: deh:cbdb_A1379 SAM-dependent methyltransferase
YP_002436657.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gur:Gura_1198 LysR family transcriptional regulator
YP_002436658.1	TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: dde:Dde_1696 hemolysin III family channel protein
YP_002436659.1	KEGG: dde:Dde_0560 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA
YP_002436660.1	KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002436661.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dde:Dde_0339 OMPP1/FadL/TodX family outer membrane protein
YP_002436662.1	KEGG: dde:Dde_0340 hypothetical protein
YP_002436663.1	PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dde:Dde_0341 DEAD/DEAH box helicase-like
YP_002436664.1	PFAM: precorrin-8X methylmutase CbiC/CobH; KEGG: dde:Dde_0342 precorrin-8X methylmutase
YP_002436665.1	TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dde:Dde_0343 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
YP_002436666.1	KEGG: dde:Dde_0344 hypothetical protein
YP_002436667.1	KEGG: dde:Dde_0346 MucR family transcriptional regulator
YP_002436668.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_0347 methyl-accepting chemotaxis sensory transducer
YP_002436669.1	KEGG: dde:Dde_0206 hypothetical protein
YP_002436670.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: glo:Glov_1037 ABC transporter
YP_002436671.1	PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1756 hypothetical protein
YP_002436672.1	KEGG: rpa:RPA1389 hypothetical protein
YP_002436673.1	KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer
YP_002436674.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_002436675.1	TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_0119 excisionase/Xis, DNA-binding
YP_002436676.1	PFAM: regulatory protein MarR; KEGG: ckl:CKL_0340 transcriptional regulator
YP_002436677.1	KEGG: dde:Dde_0063  lipoprotein
YP_002436678.1	PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein
YP_002436679.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_002436680.1	KEGG: dde:Dde_0066 DNA polymerase III tau subunit; TIGRFAM: DNA polymerase III subunits gamma/tau; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA
YP_002436681.1	PFAM: conserved hypothetical protein; KEGG: dde:Dde_0067 hypothetical protein
YP_002436682.1	TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; KEGG: dde:Dde_0068 DNA replication and repair protein RecR
YP_002436683.1	KEGG: dde:Dde_0372 hypothetical protein
YP_002436684.1	KEGG: dde:Dde_0370 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002436685.1	PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dde:Dde_0367 3-deoxy-D-manno-octulosonic-acid transferase
YP_002436686.1	SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_0365 metal dependent phosphohydrolase
YP_002436687.1	PFAM: hydrogenase formation HypD protein; KEGG: dde:Dde_0364 hydrogenase expression/formation protein HypD
YP_002436688.1	TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dde:Dde_0363 hydrogenase expression/formation protein HypE
YP_002436689.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0362 sugar transferase involved in lipopolysaccharide synthesis-like
YP_002436690.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: dde:Dde_0358 NAD-dependent epimerase/dehydratase family protein
YP_002436691.1	PFAM: regulatory protein ArsR; KEGG: dde:Dde_3721 ArsR family transcriptional regulator
YP_002436692.1	PFAM: permease; KEGG: dde:Dde_3722 permease-like
YP_002436693.1	PFAM: hypothetical protein; KEGG: dde:Dde_0357 hypothetical protein
YP_002436694.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_002436695.1	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0355 flagellar basal-body rod protein FlgC
YP_002436696.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: lip:LI0858 flagellar hook-basal body protein
YP_002436697.1	TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; flagellar M-ring domain protein; KEGG: dde:Dde_0353 flagellar M-ring protein FliF
YP_002436698.1	PFAM: flagellar motor switch protein FliG; KEGG: dde:Dde_0352 flagellar motor switch protein FliG
YP_002436699.1	KEGG: dde:Dde_0351 flagellar assembly protein FliH
YP_002436700.1	KEGG: dde:Dde_0350 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; SMART: ATPase AAA
YP_002436701.1	PFAM: phosphoesterase PA-phosphatase related; KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related
YP_002436702.1	PFAM: peptidase M23; KEGG: dde:Dde_0243 M24/M37 family peptidase
YP_002436703.1	PFAM: PP-loop domain protein; KEGG: dde:Dde_0244 hypothetical protein
YP_002436704.1	TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; KEGG: dde:Dde_0247 DNA-directed RNA polymerase, omega subunit
YP_002436705.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_002436706.1	KEGG: maq:Maqu_2657 filamentation induced by cAMP protein Fic
YP_002436707.1	KEGG: mhu:Mhun_0543 hypothetical protein
YP_002436708.1	PFAM: outer membrane efflux protein; KEGG: ppd:Ppro_1440 outer membrane efflux protein
YP_002436709.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; hypothetical protein; KEGG: mgm:Mmc1_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
YP_002436710.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dde:Dde_0249 GTP cyclohydrolase subunit MoaC
YP_002436711.1	PFAM: dimethylmenaquinone methyltransferase; KEGG: rsq:Rsph17025_3165 hypothetical protein
YP_002436712.1	KEGG: cak:Caul_3283 esterase/lipase-like protein
YP_002436713.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_002436714.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_002436715.1	TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain oligomerisation; carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: dde:Dde_0333 carbamoyl-phosphate synthase large subunit
YP_002436716.1	TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: dde:Dde_0334 amidophosphoribosyltransferase
YP_002436717.1	KEGG: dde:Dde_0335 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS)
YP_002436718.1	PFAM: thioesterase superfamily protein; KEGG: dde:Dde_0336 thioesterase family protein
YP_002436719.1	KEGG: dde:Dde_3625 hypothetical protein
YP_002436720.1	KEGG: dde:Dde_3624 hypothetical protein
YP_002436721.1	PFAM: metallophosphoesterase; KEGG: dde:Dde_3623 Ser/Thr protein phosphatase family protein
YP_002436722.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_3621 DNA-directed DNA polymerase
YP_002436723.1	PFAM: aminotransferase class IV; KEGG: dde:Dde_3619 hypothetical protein
YP_002436724.1	PFAM: chorismate binding-like; KEGG: dde:Dde_3618 aminodeoxychorismate synthase, subunit I
YP_002436725.1	PFAM: glutamine amidotransferase class-I; KEGG: dde:Dde_3617 aminodeoxychorismate synthase, glutamine amidotransferase subunit
YP_002436726.1	PFAM: protein of unknown function DUF152; KEGG: dde:Dde_3616 hypothetical protein
YP_002436727.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sth:STH1192 5-formyltetrahydrofolate cyclo-ligase
YP_002436728.1	KEGG: dde:Dde_3615 phosphoesterase, Icc protein-like
YP_002436729.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: gvi:glr3759 probable 3-hydroxyisobutyrate dehydrogenase
YP_002436730.1	KEGG: rpa:RPA2489 hypothetical protein
YP_002436731.1	PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase_; KEGG: emi:Emin_0772 iron-containing alcohol dehydrogenase
YP_002436732.1	KEGG: pvi:Cvib_0830 hypothetical protein
YP_002436733.1	KEGG: dac:Daci_1508 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002436734.1	TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bpt:Bpet2825  extracellular solute-binding protein
YP_002436735.1	KEGG: dde:Dde_1667 hypothetical protein
YP_002436736.1	TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase
YP_002436737.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_3613 glycosyl transferase domain-containing protein
YP_002436738.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3612 glycosyl transferase, group 2 family protein
YP_002436739.1	PFAM: PP-loop domain protein; KEGG: dde:Dde_3611 hypothetical protein
YP_002436740.1	KEGG: dde:Dde_3610 hypothetical protein
YP_002436741.1	PFAM: response regulator receiver; KEGG: dde:Dde_3609 response regulator receiver domain-containing protein
YP_002436742.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1356 histidine kinase
YP_002436743.1	PFAM: response regulator receiver; KEGG: dol:Dole_1358 response regulator receiver protein
YP_002436744.1	PFAM: peptidase M50; KEGG: dde:Dde_3608 M50 family peptidase
YP_002436745.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002436746.1	PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3606 hypothetical protein
YP_002436747.1	TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: dde:Dde_3605 bifunctional ADP-heptose synthase
YP_002436748.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0630 pyruvate, water dikinase
YP_002436749.1	PFAM: sigma-54 factor interaction domain-containing protein; histidine kinase HAMP region domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0697 response regulator receiver domain-containing protein
YP_002436750.1	KEGG: sfu:Sfum_0625 hypothetical protein
YP_002436751.1	PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0626 protein of unknown function DUF81
YP_002436752.1	KEGG: sfu:Sfum_0627 lipoprotein
YP_002436754.1	KEGG: sfu:Sfum_0629 hypothetical protein
YP_002436755.1	PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein
YP_002436756.1	KEGG: dde:Dde_0307 hypothetical protein
YP_002436757.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0308 ABC transporter permease
YP_002436758.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0309 ABC transporter permease
YP_002436759.1	KEGG: syf:Synpcc7942_1811 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002436760.1	PFAM: aminodeoxychorismate lyase; KEGG: dde:Dde_0315 aminodeoxychorismate lyase
YP_002436761.1	PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dde:Dde_0314 Holliday junction resolvase YqgF
YP_002436762.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase; KEGG: dde:Dde_0312 oxidoreductase
YP_002436763.1	KEGG: pph:Ppha_2828 ATPase (AAA+ superfamily)-like protein
YP_002436764.1	TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: dde:Dde_0555 (NiFe) hydrogenase maturation protein HypF
YP_002436765.1	PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_0556 MerR family transcriptional regulator
YP_002436766.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0557 acyl-CoA synthetase
YP_002436767.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: cau:Caur_1401 L-aspartate oxidase
YP_002436768.1	TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein
YP_002436769.1	TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: hypothetical protein; KEGG: lip:LI0692 periplasmic component of the Tol biopolymer transporter
YP_002436770.1	TIGRFAM: TonB family protein; KEGG: dde:Dde_3631 TonB-like
YP_002436771.1	TIGRFAM: TonB family protein; protein TolA; KEGG: dde:Dde_3631 TonB-like
YP_002436772.1	TIGRFAM: protein TolR; PFAM: biopolymertransporter ExbD/TolR; KEGG: dde:Dde_3630 biopolymer ExbD/TolR family transporter
YP_002436773.1	TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3629 TolQ protein
YP_002436774.1	PFAM: outer membrane efflux protein; KEGG: dde:Dde_3627 outer membrane efflux protein
YP_002436775.1	PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein
YP_002436776.1	PFAM: rubrerythrin; KEGG: dde:Dde_1222 rubrerythrin
YP_002436777.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_0689 rubredoxin-type Fe(Cys)4 protein
YP_002436778.1	PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_3645 TPR repeat-containing protein
YP_002436779.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_002436780.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_002436781.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_002436782.1	KEGG: mac:MA2013 sensory transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; SMART: PAC repeat-containing protein
YP_002436783.1	KEGG: dde:Dde_0536  oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_002436784.1	PFAM: protein of unknown function DUF208; KEGG: lip:LI0772 hypothetical protein
YP_002436785.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: dde:Dde_0537 ribonuclease E
YP_002436786.1	PFAM: radical SAM protein; KEGG: dde:Dde_0538 radical SAM domain-containing protein
YP_002436787.1	PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dde:Dde_0539 protein-L-isoaspartate methyltransferase-like
YP_002436788.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0250 ATPase
YP_002436789.1	PFAM: NUDIX hydrolase; KEGG: dde:Dde_0251 mutator MutT protein
YP_002436790.1	PFAM: protein of unknown function DUF606; KEGG: dde:Dde_0252 hypothetical protein
YP_002436791.1	KEGG: dde:Dde_0254 aspartate semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase NAD - binding; semialdehyde dehydrogenase dimerisation region
YP_002436792.1	PFAM: aminotransferase class IV; KEGG: dde:Dde_0255 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase
YP_002436793.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein
YP_002436794.1	PFAM: cytochrome C552; KEGG: lip:LI1002 chain A, cytochrome C nitrite reductase
YP_002436795.1	KEGG: lip:LI1001 cytochrome C nitrite reductase small subunit
YP_002436796.1	KEGG: sfu:Sfum_1725 glutamate synthase (NADPH)
YP_002436797.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: sfu:Sfum_1724 ferredoxin-dependent glutamate synthase
YP_002436798.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase subunit alpha domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_002436799.1	KEGG: swo:Swol_0938 arsenite-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase
YP_002436800.1	PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: swo:Swol_0937 arsenical resistance operon trans-acting repressor
YP_002436801.1	PFAM: regulatory protein ArsR; KEGG: psa:PST_0241 arsenic resistance transcriptional regulator
YP_002436803.1	KEGG: pau:PA14_31300 hypothetical protein
YP_002436804.1	KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein
YP_002436805.1	PFAM: carbonic anhydrase; KEGG: pca:Pcar_2939 carbonic anhydrase
YP_002436806.1	KEGG: dde:Dde_0264 hypothetical protein
YP_002436807.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rru:Rru_A2273 nickel transporter ATP-binding protein
YP_002436808.1	PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: kpn:KPN_03853 ATP-binding protein of nickel transporter
YP_002436809.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ppw:PputW619_3007 nickel ABC transporter permease subunit NikC
YP_002436810.1	with NikACDE is involved in nickel transport into the cell
YP_002436811.1	KEGG: rru:Rru_A2277 nickel ABC transporter periplasmic nickel-binding; TIGRFAM: nickel ABC transporter periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5
YP_002436812.1	PFAM: TOBE domain protein; KEGG: mma:MM_0224 molybdenum-pterin-binding-protein
YP_002436813.1	PFAM: protein of unknown function DUF1105; KEGG: bca:BCE_A0238 hypothetical protein
YP_002436814.1	PFAM: Tir chaperone family protein; KEGG: pcu:pc1105 hypothetical protein
YP_002436815.1	KEGG: fal:FRAAL5796 chromosome partition protein smc
YP_002436816.1	KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component
YP_002436817.1	PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP2229  inner membrane transporter
YP_002436818.1	KEGG: pin:Ping_3332 hypothetical protein
YP_002436819.1	PFAM: histidine kinase HAMP region domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: lip:LI1150  regulator
YP_002436820.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: lip:LI1151 transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains
YP_002436821.1	TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter; KEGG: lip:LI0551 translocation protein in type III secretion
YP_002436822.1	TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: lip:LI0550 type III secretion component protein SctT
YP_002436823.1	TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: lip:LI0549 probable translocation protein in type III secretion
YP_002436824.1	TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: lip:LI0548  type III secretion pore protein
YP_002436825.1	PFAM: hypothetical protein; KEGG: lip:LI0547 NA
YP_002436826.1	KEGG: lip:LI1152 NA
YP_002436827.1	TIGRFAM: type III secretion chaperone SycN; KEGG: lip:LI0546 NA
YP_002436828.1	TIGRFAM: type III secretion effector delivery regulator, TyeA family; type III secretion regulator YopN/LcrE/InvE/MxiC; PFAM: TyeA domain protein; KEGG: lip:LI1153  outer protein N
YP_002436829.1	KEGG: lip:LI0545 NA
YP_002436830.1	KEGG: lip:LI1154 NA
YP_002436831.1	TIGRFAM: type III secretion low calcium response chaperone LcrH/SycD; PFAM: Tetratricopeptide TPR_3; KEGG: lip:LI1157 regulatory protein PcrH
YP_002436832.1	KEGG: lip:LI1158 NA
YP_002436833.1	KEGG: bbr:BB1620  outer protein D
YP_002436834.1	KEGG: bpa:BPP2239 hypothetical protein
YP_002436835.1	TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: lip:LI1160  type III secretion protein YscC
YP_002436836.1	TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; KEGG: lip:LI1161 NA
YP_002436839.1	KEGG: lip:LI0544 NA
YP_002436840.1	KEGG: gga:395069 collagen, type II, alpha 1
YP_002436841.1	TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: lip:LI0543 LscJ
YP_002436842.1	KEGG: lip:LI0542 NA
YP_002436843.1	TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: flagellar assembly protein FliH; KEGG: lip:LI0541 type III secretion system protein
YP_002436844.1	KEGG: lip:LI0540 type III secretion system ATPase; TIGRFAM: ATPase, FliI/YscN family; type III secretion apparatus H+-transporting two-sector ATPase; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA
YP_002436845.1	PFAM: type III secretion YscO fmaily protein; KEGG: lip:LI0539 hypothetical protein
YP_002436846.1	TIGRFAM: type III secretion system needle length determinant; KEGG: lip:LI1165 NA
YP_002436847.1	TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: lip:LI1166  translocation protein in type III secretion
YP_002436848.1	part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response
YP_002436849.1	TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: lip:LI1167 anti-anti-sigma factor
YP_002436850.1	KEGG: lip:LI1168 sigma regulatory factor-histidine kinase
YP_002436851.1	PFAM: lytic transglycosylase catalytic; KEGG: lip:LI1169  transglycosylase
YP_002436852.1	KEGG: dde:Dde_3553 hypothetical protein
YP_002436853.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: maq:Maqu_2513 short-chain dehydrogenase/reductase SDR
YP_002436854.1	PFAM: HPP family protein?; KEGG: mgm:Mmc1_0464 HPP family protein+B94
YP_002436855.1	KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase
YP_002436856.1	PFAM: PDZ/DHR/GLGF domain protein; protein of unknown function DUF399; KEGG: dde:Dde_0541 PDZ/DHR/GLGF
YP_002436857.1	PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0150; KEGG: ccr:CC_3185 CopG family DNA-binding protein
YP_002436858.1	KEGG: dde:Dde_0542 DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: zinc finger Fpg domain protein; Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding
YP_002436859.1	PFAM: ComEC/Rec2-related protein; KEGG: dde:Dde_0547 ComEC/Rec2-related protein
YP_002436860.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002436861.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: dde:Dde_0544 periplasmic sensor hybrid histidine kinase
YP_002436862.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: dde:Dde_0543 integral membrane protein MviN
YP_002436863.1	KEGG: dde:Dde_0550 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein
YP_002436864.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: mag:amb2535 hemerythrin; FOG: CheY-like receiver
YP_002436865.1	KEGG: dde:Dde_0551 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase
YP_002436866.1	KEGG: dde:Dde_0552 hypothetical protein
YP_002436867.1	PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: dde:Dde_1258 fumarate reductase, cytochrome b subunit
YP_002436868.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_002436869.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_002436870.1	Catalyzes the reversible hydration of fumaric acid to yield I-malic acid
YP_002436871.1	TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: dde:Dde_1254 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta
YP_002436872.1	KEGG: dde:Dde_0554 hypothetical protein
YP_002436873.1	KEGG: dde:Dde_1347 hypothetical protein
YP_002436874.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0072 LysR family transcriptional regulator
YP_002436875.1	KEGG: sco:SCO3115 hypothetical protein
YP_002436876.1	KEGG: spt:SPA2121 molybdopterin-containing oxidoreductase membrane anchor subunit
YP_002436877.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sew:SeSA_A0770 molybdopterin-containing oxidoreductase iron-sulfur subunit
YP_002436878.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit
YP_002436879.1	PFAM: cytoplasmic chaperone TorD family protein; KEGG: stm:STM0610  anaerobic dehydrogenase component
YP_002436880.1	KEGG: dde:Dde_3205 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II
YP_002436881.1	PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase subunit I
YP_002436882.1	TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sfu:Sfum_3697 molybdenum ABC transporter periplasmic molybdate-binding protein
YP_002436883.1	PFAM: protein of unknown function UPF0066; KEGG: sfu:Sfum_0270 protein of unknown function UPF0066
YP_002436884.1	PFAM: integrase family protein; TOBE domain protein; KEGG: dde:Dde_3517 molybdenum-pterin binding domain-containing protein
YP_002436885.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_3696 ABC transporter
YP_002436886.1	TIGRFAM: molybdate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sfu:Sfum_3698 molybdate ABC transporter inner membrane protein
YP_002436887.1	PFAM: beta-lactamase; flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3195 rubredoxin-oxygen oxidoreductase
YP_002436888.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3194 rubredoxin
YP_002436889.1	TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dde:Dde_3193 desulfoferrodoxin
YP_002436890.1	TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer
YP_002436891.1	KEGG: hmo:HM1_1611 sensor histidine kinase, TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002436892.1	PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dde:Dde_3191 phosphoribosylformylglycinamidine synthase
YP_002436893.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_0283 ABC transporter
YP_002436894.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lip:LI1030 phosphate ABC transporter permease protein
YP_002436895.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sfu:Sfum_0285 binding-protein-dependent transport systems inner membrane component
YP_002436896.1	TIGRFAM: phosphate binding protein; KEGG: lip:LI1028 phosphate-binding protein
YP_002436897.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_3190 diguanylate cyclase
YP_002436898.1	PFAM: polyprenyl synthetase; KEGG: dde:Dde_3189 trans-hexaprenyltranstransferase
YP_002436899.1	PFAM: purine or other phosphorylase family 1; KEGG: dde:Dde_3188 hypothetical protein
YP_002436902.1	TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein
YP_002436903.1	KEGG: mgm:Mmc1_1575 hypothetical protein
YP_002436904.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_3185 demethylmenaquinone methyltransferase
YP_002436905.1	KEGG: dde:Dde_3184 hypothetical protein
YP_002436906.1	KEGG: dde:Dde_3183 hypothetical protein
YP_002436907.1	PFAM: cytochrome C class III; KEGG: dde:Dde_3182 cytochrome C3
YP_002436908.1	TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3181 precorrin-3 methyltransferase
YP_002436909.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dde:Dde_3181 precorrin-3 methyltransferase
YP_002436910.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_002436911.1	SMART: regulatory protein AsnC/Lrp family; KEGG: dde:Dde_3179 AsnC family transcriptional regulator
YP_002436912.1	PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3175 hypothetical protein
YP_002436913.1	KEGG: dde:Dde_3173 selenocysteine-specific translation elongation factor SelB; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3
YP_002436914.1	KEGG: dde:Dde_3169 hypothetical protein
YP_002436915.1	KEGG: dde:Dde_3167 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein
YP_002436916.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_002436917.1	TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: dde:Dde_3165 tRNA pseudouridine synthase B
YP_002436918.1	PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein
YP_002436919.1	PFAM: protein of unknown function DUF503; KEGG: dde:Dde_3163 hypothetical protein
YP_002436920.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_002436921.1	KEGG: ace:Acel_1516 protein of unknown function DUF448
YP_002436922.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_002436923.1	PFAM: protein of unknown function DUF150; KEGG: dde:Dde_3160 hypothetical protein
YP_002436924.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3159 flagellar basal-body rod protein
YP_002436925.1	makes up the distal portion of the flagellar basal body rod
YP_002436926.1	TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: dde:Dde_3157 FlgA family protein
YP_002436927.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_002436928.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_002436929.1	PFAM: peptidase M23; KEGG: dde:Dde_3154 membrane proteins, metalloendopeptidase-like
YP_002436930.1	PFAM: FlgN family protein; KEGG: dde:Dde_3153 hypothetical protein
YP_002436931.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3152 flagellar hook-associated protein
YP_002436932.1	TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL
YP_002436933.1	PFAM: carbon storage regulator; KEGG: dde:Dde_3150 carbon storage regulator
YP_002436934.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_002436935.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sfu:Sfum_1010 transcriptional regulator, NifA subfamily, fis family
YP_002436936.1	PFAM: MscS Mechanosensitive ion channel; KEGG: lip:LI1173 3264: small-conductance mechanosensitive channel
YP_002436937.1	KEGG: dde:Dde_0292 hypothetical protein
YP_002436938.1	KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like
YP_002436939.1	PFAM: cytochrome C class III; KEGG: dde:Dde_0561 cytochrome C family protein
YP_002436940.1	Contains selenocysteine; TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dde:Dde_0813 formate dehydrogenase subunit alpha
YP_002436941.1	KEGG: dde:Dde_3514 formate dehydrogenase subunit beta
YP_002436942.1	PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: azo:azo2986  methyltransferase
YP_002436943.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3234 two component Fis family transcriptional regulator
YP_002436944.1	KEGG: gsu:GSU0842 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002436945.1	KEGG: dde:Dde_0976 hypothetical protein
YP_002436946.1	KEGG: mac:MA1270 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002436947.1	PFAM: response regulator receiver; KEGG: mag:amb2979 FOG: CheY-like receiver
YP_002436948.1	KEGG: pca:Pcar_0053 two component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002436949.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2159 methyl-accepting chemotaxis sensory transducer
YP_002436950.1	PFAM: response regulator receiver; KEGG: lch:Lcho_0734 response regulator receiver protein
YP_002436951.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: glo:Glov_0589 multi-sensor signal transduction histidine kinase
YP_002436952.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mex:Mext_3509 metal-dependent phosphohydrolase HD sub domain
YP_002436953.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0235 BadM/Rrf2 family transcriptional regulator
YP_002436954.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_3719 BadM/Rrf2 family transcriptional regulator
YP_002436955.1	KEGG: dde:Dde_3718 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002436956.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3717 response regulator receiver sensor signal transduction histidine kinase
YP_002436957.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase
YP_002436958.1	PFAM: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein
YP_002436959.1	PFAM: UspA domain protein; KEGG: dde:Dde_3712 universal stress protein
YP_002436960.1	KEGG: dde:Dde_3711 hypothetical protein
YP_002436961.1	KEGG: dde:Dde_3710 acidic cytochrome C3
YP_002436962.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3709 ferredoxin 4Fe-4S
YP_002436963.1	KEGG: dde:Dde_3708 hypothetical protein
YP_002436964.1	KEGG: dde:Dde_3707 hypothetical protein
YP_002436965.1	KEGG: dde:Dde_1011 hypothetical protein
YP_002436967.1	PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bmj:BMULJ_02621 AraC subfamily transcriptional regulator
YP_002436968.1	KEGG: ptm:GSPATT00013277001 hypothetical protein
YP_002436969.1	PFAM: ThiJ/PfpI domain protein; KEGG: gur:Gura_3528 ThiJ/PfpI domain protein
YP_002436970.1	PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein
YP_002436971.1	TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer
YP_002436972.1	KEGG: cch:Cag_0501 periplasmic phosphate binding protein
YP_002436973.1	TIGRFAM: phosphate ABC transporter inner membrane protein PstC; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cch:Cag_0500 phosphate ABC transporter permease PstC
YP_002436974.1	TIGRFAM: phosphate ABC transporter inner membrane protein PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: csa:Csal_1478 phosphate transporter permease 2
YP_002436975.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: dol:Dole_1842 filamentation induced by cAMP protein Fic
YP_002436976.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: dde:Dde_0483 ATPase
YP_002436977.1	KEGG: dde:Dde_0484 hypothetical protein
YP_002436978.1	KEGG: dde:Dde_0485 hypothetical protein
YP_002436979.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: mxa:MXAN_0172 sigma-54 dependent DNA-binding response regulator
YP_002436980.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: psa:PST_4054 sensory box histidine kinase
YP_002436981.1	PFAM: osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: mxa:MXAN_0167 osmosensitive K+ channel His kinase sensor domain/universal stress domain protein
YP_002436982.1	KEGG: pna:Pnap_3602 potassium-transporting ATPase, C subunit; TIGRFAM: potassium ABC transporter ATPase; PFAM: K transporting ATPase KdpC subunit
YP_002436983.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase subunit beta; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: aba:acid345_0511 potassium-translocating P-type ATPase subunit beta
YP_002436984.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_002436985.1	TIGRFAM: K+-transporting ATPase, F subunit; PFAM: K+transporting ATPase F subunit
YP_002436986.1	PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_3135 ArsR family transcriptional regulator
YP_002436987.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_002436988.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rxy:Rxyl_2873 cation diffusion facilitator family transporter
YP_002436989.1	with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase
YP_002436990.1	TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: dde:Dde_1179 DAK2 domain-containing protein
YP_002436991.1	KEGG: dde:Dde_1180 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; dihydroxyacetone kinase, phosphotransfer subunit; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; PTS system fructose subfamily IIA component; PEP-utilising protein mobile region; PEP-utilising protein domain protein
YP_002436992.1	PFAM: anti-sigma-28 factor FlgM family protein; KEGG: dde:Dde_0638  anti-sigma-28 factor, FlgM
YP_002436993.1	KEGG: dde:Dde_0639 hypothetical protein
YP_002436994.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_002436995.1	PFAM: phosphatidylglycerophosphatase A; KEGG: dde:Dde_0641 phosphatidylglycerophosphatase
YP_002436996.1	PFAM: lysine exporter (LYSE/YGGA); KEGG: rpc:RPC_0776 lysine exporter protein (LysE/YggA)
YP_002436997.1	PFAM: response regulator receiver; KEGG: glo:Glov_1742 response regulator receiver protein
YP_002436998.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0647 BadM/Rrf2 family transcriptional regulator
YP_002436999.1	PFAM: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein
YP_002437000.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6
YP_002437001.1	KEGG: dde:Dde_0649 hmc operon protein 5
YP_002437002.1	KEGG: dde:Dde_0650 hmc operon protein 4
YP_002437003.1	PFAM: polysulphide reductase NrfD; KEGG: dde:Dde_0651 hmc operon protein 3
YP_002437004.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein
YP_002437005.1	PFAM: cytochrome C class III; KEGG: dde:Dde_0653 high-molecular-weight cytochrome C
YP_002437006.1	PFAM: xylose isomerase; KEGG: dde:Dde_0655 AP endonuclease
YP_002437007.1	PFAM: beta-lactamase; KEGG: bpt:Bpet0311 metallo-beta-lactamase superfamily protein
YP_002437008.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0879 two component Fis family transcriptional regulator
YP_002437009.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase
YP_002437010.1	PFAM: conserved hypothetical protein; KEGG: drm:Dred_1866 conserved hypothetical protein 698
YP_002437011.1	KEGG: cbd:CBUD_1070 biotin carboxylase
YP_002437012.1	PFAM: UspA domain protein; KEGG: pna:Pnap_2298 UspA domain protein
YP_002437013.1	TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: cvi:CV_1360 large-conductance mechanosensitive channel
YP_002437014.1	PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0612 high-affinity branched chain amino acid ABC transporter periplasmic branched chain amino acid-binding protein
YP_002437015.1	PFAM: inner-membrane translocator; KEGG: dde:Dde_0611 high-affinity branched-chain amino acid ABC transporter permease
YP_002437016.1	PFAM: inner-membrane translocator; KEGG: sat:SYN_00787 branched-chain amino acid transporter permease
YP_002437017.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0609 ATPase
YP_002437018.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0608 ATPase
YP_002437019.1	PFAM: pyruvate carboxyltransferase; KEGG: met:M446_3580 homocitrate synthase
YP_002437020.1	nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex
YP_002437021.1	PFAM: nitrogen regulatory protein P-II; KEGG: sfu:Sfum_1018 nitrogen regulatory protein P-II
YP_002437022.1	PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1345 nitrogen regulatory protein P-II
YP_002437023.1	KEGG: sfu:Sfum_1016 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1
YP_002437024.1	KEGG: sfu:Sfum_1015 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1
YP_002437025.1	PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM protein; KEGG: cpc:Cpar_1626 nitrogenase cofactor biosynthesis protein NifB
YP_002437026.1	KEGG: cpb:Cphamn1_1759 ferredoxin 2Fe-2S
YP_002437027.1	functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe
YP_002437028.1	PFAM: oxidoreductase/nitrogenase component 1; KEGG: sfu:Sfum_1012 nitrogenase
YP_002437029.1	KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_002437030.1	PFAM: rhodanese; KEGG: mem:Memar_2054 rhodanese domain protein
YP_002437031.1	TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit; KEGG: dde:Dde_3130 acetolactate synthase, small subunit
YP_002437032.1	PFAM: phosphate acetyl/butaryl transferase; KEGG: dde:Dde_3129 phosphate butyryltransferase
YP_002437033.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_002437034.1	PFAM: regulatory protein TetR; KEGG: dde:Dde_3127 TetR family transcriptional regulator
YP_002437035.1	KEGG: dde:Dde_3125 hypothetical protein
YP_002437036.1	PFAM: cupin; KEGG: mba:Mbar_A1827 hypothetical protein
YP_002437037.1	KEGG: dde:Dde_3124 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SMART: RNA binding S1 domain protein
YP_002437038.1	KEGG: dde:Dde_3123 hypothetical protein
YP_002437039.1	KEGG: dde:Dde_3122 dolichyl-phosphate-mannose-protein mannosyltransferase family protein
YP_002437040.1	PFAM: aldehyde dehydrogenase_; KEGG: dsy:DSY1102 hypothetical protein
YP_002437041.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_3119 hypothetical protein
YP_002437042.1	KEGG: dde:Dde_3118 hypothetical protein
YP_002437043.1	KEGG: dde:Dde_3117 hypothetical protein
YP_002437044.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: mag:amb3301 response regulator
YP_002437045.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: bvi:Bcep1808_4142 UDP-N-acetylglucosamine 2-epimerase
YP_002437046.1	KEGG: dde:Dde_1333 hypothetical protein
YP_002437047.1	KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002437048.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_002437049.1	KEGG: dde:Dde_3102 hypothetical protein
YP_002437050.1	PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_3100 response regulator receiver (CheY-like) modulated CheW protein
YP_002437051.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; SMART: ATPase AAA; KEGG: dde:Dde_3097 two component Fis family transcriptional regulator
YP_002437052.1	PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase
YP_002437053.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dde:Dde_3094 phosphoesterase PHP-like
YP_002437054.1	PFAM: protein of unknown function DUF343; KEGG: dde:Dde_3093 hypothetical protein
YP_002437055.1	PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3092 HSP20 family protein
YP_002437056.1	PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3091 HSP20 family protein
YP_002437057.1	TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: dde:Dde_3090 phosphodiesterase
YP_002437058.1	PFAM: dihydrouridine synthase; KEGG: dde:Dde_3089 dihydrouridine synthase family protein
YP_002437059.1	PFAM: regulatory protein MerR; KEGG: bja:bll4578 transcriptional regulatory protein
YP_002437060.1	PFAM: carboxymuconolactone decarboxylase; KEGG: mag:amb3965 hypothetical protein
YP_002437061.1	KEGG: dac:Daci_5716 acetyltransferase
YP_002437063.1	PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_3083 glyoxalase family protein
YP_002437064.1	KEGG: dde:Dde_3081 serine O-acetyltransferase
YP_002437065.1	TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: dde:Dde_3080 cysteine synthase
YP_002437066.1	TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class-III; KEGG: dde:Dde_3079 cysteine desulfurase
YP_002437067.1	TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dde:Dde_3078 Fe-S cluster assembly protein NifU
YP_002437068.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_3077 metal dependent phosphohydrolase
YP_002437069.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_3077 metal dependent phosphohydrolase
YP_002437070.1	TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_3074 methyl-accepting chemotaxis sensory transducer
YP_002437071.1	SMART: PDZ/DHR/GLGF domain protein; KEGG: mag:amb4535 Zn-dependent protease with chaperone function
YP_002437072.1	KEGG: dde:Dde_1218 hypothetical protein
YP_002437073.1	PFAM: protein of unknown function UPF0047; KEGG: bra:BRADO6457 hypothetical protein
YP_002437074.1	KEGG: dde:Dde_2939 hypothetical protein
YP_002437075.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2940 hypothetical protein
YP_002437076.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_002437077.1	KEGG: dde:Dde_2942 hypothetical protein
YP_002437078.1	PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; KEGG: dde:Dde_2943 aldehyde:ferredoxin oxidoreductase, tungsten-containing
YP_002437079.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2944 iron-sulfur cluster-binding protein
YP_002437080.1	PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: dde:Dde_2945 phosphomannomutase
YP_002437081.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: dde:Dde_2946 HflK protein
YP_002437082.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: dde:Dde_2947 HflC protein
YP_002437083.1	PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dde:Dde_2949 DNA-binding protein
YP_002437084.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: azo:azo3685  hybrid sensor and regulator protein
YP_002437085.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2951 PAS/PAC sensor signal transduction histidine kinase
YP_002437086.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_2952 two component Fis family transcriptional regulator
YP_002437087.1	TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: saz:Sama_0143 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_002437088.1	PFAM: ribonuclease BN; KEGG: dde:Dde_3064 ribonuclease BN
YP_002437089.1	KEGG: dde:Dde_3065 membrane-bound lytic murein transglycosylase B-like
YP_002437090.1	KEGG: rru:Rru_A2406 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002437091.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3069 amino acid ABC transporter permease
YP_002437092.1	PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_3070 extracellular solute-binding protein
YP_002437093.1	TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3071 amino acid ABC transporter permease
YP_002437094.1	PFAM: polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit
YP_002437095.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2934 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
YP_002437096.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit
YP_002437097.1	KEGG: dde:Dde_2932 hypothetical protein
YP_002437098.1	KEGG: dde:Dde_2931 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; Cupin 2 conserved barrel domain protein
YP_002437099.1	KEGG: dde:Dde_2930 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related
YP_002437100.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2929 histidine kinase
YP_002437101.1	TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: mca:MCA1146 GDP-mannose 4,6-dehydratase
YP_002437102.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_2900 GDP-fucose synthetase NAD dependent epimerase/dehydratase
YP_002437103.1	PFAM: glycosyl transferase family 2; KEGG: rpb:RPB_3840 glycosyl transferase, family 2
YP_002437104.1	PFAM: acyltransferase 3; KEGG: vpa:VPA0771  lipopolysaccharide modification acyltransferase
YP_002437105.1	TIGRFAM: methyltransferase FkbM family; KEGG: dde:Dde_2875 hypothetical protein
YP_002437106.1	PFAM: glycosyl transferase family 11; KEGG: dde:Dde_2877 alpha-1,2-fucosyltransferase
YP_002437107.1	PFAM: glycosyl transferase family 2; KEGG: glo:Glov_2749 protein of unknown function DUF268
YP_002437108.1	PFAM: ABC transporter; KEGG: dde:Dde_2896 ABC transporter permease
YP_002437109.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ote:Oter_3246 ABC transporter
YP_002437110.1	KEGG: tde:TDE1418 hypothetical protein
YP_002437111.1	PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4087 glycosyl transferase, family 2
YP_002437112.1	PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_2583 glycosyl transferase family 2
YP_002437113.1	KEGG: met:M446_1074 glycosyl transferase group 1
YP_002437114.1	KEGG: cpc:Cpar_0784 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: CI repressor; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002437115.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation
YP_002437116.1	PFAM: nitroreductase; KEGG: gsu:GSU2426 hypothetical protein
YP_002437117.1	PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer
YP_002437118.1	KEGG: dde:Dde_2858 cytochrome C family protein
YP_002437119.1	TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer
YP_002437120.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU2681 iron-sulfur cluster-binding protein
YP_002437121.1	PFAM: protein of unknown function DUF362; KEGG: sat:SYN_02059 hypothetical cytosolic protein
YP_002437124.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_002437125.1	KEGG: lip:LI0923 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein
YP_002437126.1	KEGG: dde:Dde_2808 competence protein ComM
YP_002437127.1	KEGG: sat:SYN_00794 phosphatidylserine/phosphatidylglycerophosphate related protein
YP_002437129.1	PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pdi:BDI_2144 hypothetical protein
YP_002437130.1	PFAM: radical SAM protein; KEGG: pzu:PHZ_c2419 hypothetical protein
YP_002437131.1	KEGG: ret:RHE_PA00005 hypothetical protein
YP_002437132.1	PFAM: Resolvase domain; KEGG: met:M446_1223 resolvase domain
YP_002437133.1	SMART: ParB domain protein nuclease; KEGG: azc:AZC_1530 hypothetical protein
YP_002437134.1	PFAM: Resolvase domain; Recombinase; KEGG: dde:Dde_2774 hypothetical protein
YP_002437135.1	PFAM: magnesium chelatase ChlI subunit; KEGG: dde:Dde_2773 competence protein ComM
YP_002437136.1	KEGG: met:M446_5119 flagellar hook-length control protein
YP_002437137.1	KEGG: dde:Dde_3506 hypothetical protein
YP_002437138.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_2370 multi-sensor hybrid histidine kinase
YP_002437139.1	PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein
YP_002437140.1	PFAM: von Willebrand factor  A; KEGG: dde:Dde_2368 von Willebrand factor, type A
YP_002437141.1	PFAM: TadE family protein; KEGG: dde:Dde_2367 hypothetical protein
YP_002437142.1	PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_2366 hypothetical protein
YP_002437143.1	PFAM: type II secretion system protein; KEGG: dde:Dde_2365 hypothetical protein
YP_002437144.1	PFAM: type II secretion system protein; KEGG: dde:Dde_2364 hypothetical protein
YP_002437145.1	PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein
YP_002437146.1	KEGG: dde:Dde_2362 response regulator receiver domain-containing protein
YP_002437147.1	KEGG: dde:Dde_2361 hypothetical protein
YP_002437148.1	PFAM: type II and III secretion system protein; transport-associated; KEGG: dde:Dde_2360 type II/III secretion system protein
YP_002437149.1	TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: dde:Dde_2359  pilus assembly protein CpaB
YP_002437150.1	PFAM: peptidase A24A prepilin type IV; KEGG: dde:Dde_2358 hypothetical protein
YP_002437151.1	PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin
YP_002437152.1	PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin
YP_002437153.1	PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin
YP_002437154.1	PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin
YP_002437155.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_2355 two component Fis family transcriptional regulator
YP_002437156.1	KEGG: dde:Dde_2770 hypothetical protein
YP_002437157.1	PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0258 amino acid ABC transporter periplasmic-binding protein
YP_002437158.1	PFAM: inner-membrane translocator; KEGG: dde:Dde_0259 branched-chain amino acid ABC transporter permease
YP_002437159.1	PFAM: inner-membrane translocator; KEGG: dde:Dde_0260 branched-chain amino acid ABC transporter permease
YP_002437160.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0261 ATPase
YP_002437161.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0262 ATPase
YP_002437162.1	PFAM: response regulator receiver; KEGG: dde:Dde_2769 multi-sensor hybrid histidine kinase
YP_002437163.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_002437164.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_002437165.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: azo:azo0498 GGDEF/PAS/PAC-domain containing protein
YP_002437166.1	PFAM: protein of unknown function DUF255; KEGG: sru:SRU_1548 protein of unknown function, DUF255 family
YP_002437167.1	PFAM: conserved hypothetical protein; KEGG: atu:Atu2400 hypothetical protein
YP_002437168.1	KEGG: dde:Dde_2843 hypothetical protein
YP_002437169.1	TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; MASE1 domain protein; hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_4030 diguanylate cyclase
YP_002437170.1	KEGG: mag:amb3043 ABC-type tungstate transporter, permease
YP_002437171.1	KEGG: dde:Dde_2840 hypothetical protein
YP_002437172.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_002437173.1	KEGG: cbf:CLI_1113 hypothetical protein
YP_002437174.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen III synthase HEM4; KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase
YP_002437175.1	PFAM: MOSC domain containing protein; KEGG: dde:Dde_2836 MOSC domain-containing protein
YP_002437176.1	TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; KEGG: dde:Dde_2835 phosphoribosylglycinamide formyltransferase
YP_002437177.1	PFAM: lysine exporter (LYSE/YGGA); KEGG: dde:Dde_2833 hypothetical protein
YP_002437178.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_2832 multi-sensor signal transduction histidine kinase
YP_002437179.1	PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_2831 substrate-binding protein
YP_002437180.1	PFAM: AMMECR1 domain protein; KEGG: dde:Dde_2830 AMMECR1
YP_002437181.1	PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_2829 hypothetical protein
YP_002437182.1	KEGG: dde:Dde_2828 hypothetical protein
YP_002437183.1	KEGG: dde:Dde_2827 hypothetical protein
YP_002437184.1	KEGG: dde:Dde_2826 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002437185.1	KEGG: dde:Dde_2825 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATPase AAA
YP_002437186.1	KEGG: dde:Dde_0234 ABC transporter periplasmic substrate-binding protein
YP_002437187.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0233 ABC transporter permease
YP_002437188.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0232 ATPase
YP_002437189.1	TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2823 acetyl-coenzyme A synthetase
YP_002437190.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: dde:Dde_2822 response regulator receiver domain-containing protein
YP_002437191.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer
YP_002437192.1	TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2765 amino acid ABC transporter permease
YP_002437193.1	PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_2764 extracellular solute-binding protein
YP_002437194.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2763 ATPase
YP_002437195.1	PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_2762 histidine kinase
YP_002437196.1	PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1667 hypothetical protein
YP_002437197.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2760 hypothetical protein
YP_002437198.1	PFAM: YceI family protein; SMART: Rhodanese domain protein; KEGG: dps:DP1288 hypothetical protein
YP_002437199.1	PFAM: pirin; KEGG: dps:DP1287 pirin
YP_002437200.1	KEGG: dde:Dde_2759 hypothetical protein
YP_002437201.1	PFAM: peptidase M29 aminopeptidase II; KEGG: dde:Dde_2758 M29 family peptidase
YP_002437202.1	PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_2755 hypothetical protein
YP_002437203.1	KEGG: lip:LI0115 hypothetical protein
YP_002437204.1	PFAM: transcription activator effector binding; KEGG: dde:Dde_2753 hypothetical protein
YP_002437205.1	PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_2752 histone-like DNA-binding protein
YP_002437206.1	KEGG: lpc:LPC_0907  mitomycin resistance protein McrB
YP_002437207.1	PFAM: MOFRL domain protein; KEGG: dde:Dde_2751 glycerate 2-kinase
YP_002437208.1	PFAM: transport-associated; KEGG: dde:Dde_2000 transporter
YP_002437209.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_2749 rubredoxin
YP_002437210.1	TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: azc:AZC_3677  chromate transporter
YP_002437211.1	KEGG: bid:Bind_2524 ChrB protein
YP_002437212.1	KEGG: mta:Moth_1023 hypothetical protein
YP_002437213.1	PFAM: major facilitator superfamily MFS_1; KEGG: sfu:Sfum_0094 major facilitator superfamily MFS_1
YP_002437214.1	KEGG: mka:MK0494 HD superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_002437215.1	PFAM: aminotransferase class V; KEGG: dde:Dde_2744 aminotransferase, class V
YP_002437216.1	KEGG: dde:Dde_2743 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase
YP_002437217.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_002437218.1	PFAM: protein of unknown function DUF81; KEGG: dol:Dole_2891 hypothetical protein
YP_002437219.1	PFAM: integrase family protein; TOBE domain protein; KEGG: dde:Dde_3517 molybdenum-pterin binding domain-containing protein
YP_002437220.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_002437221.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_002437222.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_1006 enoyl-[acyl-carrier-protein] reductase [NADH]
YP_002437223.1	KEGG: dde:Dde_1000 hypothetical protein
YP_002437224.1	TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: dde:Dde_0998 methylated-DNA--protein-cysteine methyltransferase
YP_002437225.1	KEGG: dde:Dde_0997 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_002437226.1	functions in MreBCD complex in some organisms
YP_002437227.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_002437228.1	KEGG: dde:Dde_0994 hypothetical protein
YP_002437229.1	KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain
YP_002437230.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dde:Dde_0992 rod shape-determining protein RodA
YP_002437231.1	PFAM: protein of unknown function DUF583; KEGG: dde:Dde_0991 hypothetical protein
YP_002437232.1	PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0990 ATP synthase F0 B' subunit
YP_002437233.1	PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0989 ATP synthase F0 subunit beta
YP_002437234.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex
YP_002437235.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_002437236.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit
YP_002437237.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_002437238.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit epsilon is part of the catalytic core of the ATP synthase complex
YP_002437239.1	KEGG: dde:Dde_1145 hypothetical protein
YP_002437240.1	KEGG: dde:Dde_1143 hypothetical protein
YP_002437241.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_002437242.1	KEGG: dde:Dde_1022 hypothetical protein
YP_002437243.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: dde:Dde_1021 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
YP_002437244.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002437245.1	PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dde:Dde_1019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_002437246.1	PFAM: EAL domain protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2343 diguanylate phosphodiesterase
YP_002437247.1	PFAM: response regulator receiver; KEGG: dde:Dde_1018 response regulator receiver domain-containing protein
YP_002437248.1	KEGG: dde:Dde_1017 hypothetical protein
YP_002437249.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_1016 two component Fis family transcriptional regulator
YP_002437250.1	PFAM: ATP-binding region ATPase domain protein; KEGG: sfu:Sfum_3740  PAS/PAC sensor protein
YP_002437251.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_002437252.1	KEGG: dde:Dde_1010 hypothetical protein
YP_002437253.1	PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; KEGG: dde:Dde_0765 CBS
YP_002437254.1	PFAM: protein of unknown function DUF161; KEGG: dde:Dde_2520 hypothetical protein
YP_002437255.1	KEGG: dde:Dde_0769 hypothetical protein
YP_002437256.1	KEGG: dde:Dde_0788 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein
YP_002437257.1	PFAM: nitroreductase; KEGG: dde:Dde_0787 nitroreductase family protein
YP_002437258.1	PFAM: beta-lactamase; KEGG: dde:Dde_0786 metallo-beta-lactamase family protein
YP_002437261.1	PFAM: NADPH-dependent FMN reductase; KEGG: dde:Dde_0785 iron-sulfur flavoprotein
YP_002437262.1	PFAM: phosphoribosyltransferase; KEGG: lip:LI1111 predicted amidophosphoribosyltransferases
YP_002437263.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpt:Bpet3662 short chain dehydrogenase
YP_002437264.1	KEGG: dde:Dde_1189 hypothetical protein
YP_002437265.1	PFAM: response regulator receiver; KEGG: dde:Dde_0774 response regulator receiver domain-containing protein
YP_002437266.1	PFAM: import inner membrane translocase subunit Tim44; KEGG: dde:Dde_0773 hypothetical protein
YP_002437267.1	PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_1027 bacterioferritin comigratory protein
YP_002437268.1	PFAM: AsmA family protein; KEGG: dde:Dde_1028 hypothetical protein
YP_002437269.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_002437270.1	KEGG: ago:AGOS_ADR019C ADR019Cp
YP_002437272.1	KEGG: tcx:Tcr_0674 protein of unknown function DUF847
YP_002437273.1	PFAM: transglycosylase; KEGG: gme:Gmet_1208 transglycosylase
YP_002437275.1	PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein
YP_002437276.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1538 chemotaxis protein MotA
YP_002437277.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_002437278.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_002437279.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase iron-sulfur subunit
YP_002437280.1	PFAM: FAD linked oxidase; KEGG: dde:Dde_1087 glycolate oxidase subunit GlcD
YP_002437281.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_002437282.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: dde:Dde_1089 phosphoenolpyruvate--protein phosphotransferase
YP_002437283.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: dde:Dde_1090 HPrNtr
YP_002437284.1	PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dde:Dde_1091 PTS system, IID component
YP_002437285.1	PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_1092 hypothetical protein
YP_002437286.1	PFAM: protein of unknown function UPF0102; KEGG: lip:LI0223 predicted endonuclease distantly related to archaeal Holliday junction resolvase
YP_002437287.1	PFAM: ribonuclease HII/HIII; KEGG: dde:Dde_1094 RNase HII
YP_002437288.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_002437289.1	KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase
YP_002437290.1	TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: dde:Dde_1097 16S rRNA processing protein RimM
YP_002437291.1	KEGG: dde:Dde_1098 hypothetical protein
YP_002437292.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_002437293.1	KEGG: dde:Dde_1100 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA
YP_002437294.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002437295.1	KEGG: dde:Dde_1105 hypothetical protein
YP_002437296.1	KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like
YP_002437297.1	TIGRFAM: adenylylsulfate reductase subunit beta; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1109 adenylylsulfate reductase subunit beta
YP_002437298.1	catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite
YP_002437299.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_1111 heterodisulfide reductase
YP_002437300.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase subunit delta; KEGG: dde:Dde_1112 heterodisulfide reductase, iron-sulfur-binding subunit
YP_002437301.1	KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit
YP_002437302.1	KEGG: dde:Dde_1114 hypothetical protein
YP_002437303.1	PFAM: protein of unknown function UPF0027; KEGG: fal:FRAAL4283 hypothetical protein
YP_002437304.1	KEGG: bid:Bind_2909 hypothetical protein
YP_002437305.1	KEGG: dde:Dde_2578 AsnC family transcriptional regulator
YP_002437306.1	PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_2577 elongator protein 3/MiaB/NifB
YP_002437307.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_002437308.1	PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_2575 elongator protein 3/MiaB/NifB
YP_002437309.1	PFAM: protein of unknown function DUF490; KEGG: lip:LI0689 hypothetical protein
YP_002437310.1	PFAM: surface antigen (D15); KEGG: lip:LI0688 outer membrane protein
YP_002437311.1	KEGG: lip:LI0341 hypothetical protein
YP_002437312.1	KEGG: dde:Dde_1115 hypothetical protein
YP_002437313.1	TIGRFAM: MJ0042 family finger-like protein; PFAM: zinc finger/thioredoxin KEGG: dde:Dde_1116 hypothetical protein
YP_002437314.1	KEGG: dde:Dde_1117 hypothetical protein
YP_002437315.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1118 glycosyl transferase, group 1 family protein
YP_002437316.1	PFAM: flagellar protein FliS; KEGG: dde:Dde_1119 flagellar protein FliS
YP_002437317.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: dde:Dde_1120 flagellar hook-associated protein 2
YP_002437318.1	PFAM: peptidase M22 glycoprotease; KEGG: dde:Dde_1121 glycoprotease family protein
YP_002437319.1	TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: dde:Dde_1122 peptidase RseP
YP_002437320.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_002437321.1	PFAM: pyridoxal-dependent decarboxylase; KEGG: dde:Dde_1124 aromatic amino acid decarboxylase
YP_002437322.1	PFAM: phosphatidate cytidylyltransferase; KEGG: dde:Dde_1125 phosphatidate cytidylyltransferase
YP_002437323.1	KEGG: dde:Dde_1126 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_002437324.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_002437325.1	Catalyzes the phosphorylation of UMP to UDP
YP_002437326.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1130 glycosyl transferase, group 2 family protein
YP_002437327.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mrd:Mrad2831_1187 NAD-dependent epimerase/dehydratase
YP_002437328.1	TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; translation elongation factor EFTs/EF1B dimerisation; KEGG: dde:Dde_1132 translation elongation factor Ts (EF-Ts)
YP_002437329.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_002437330.1	PFAM: fumarylacetoacetate hydrolase; KEGG: dde:Dde_1138 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
YP_002437331.1	PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1137 metallo-beta-lactamase family protein
YP_002437332.1	catalyzes the reduction of tartronate semialdehyde to glycerate
YP_002437333.1	PFAM: methicillin resistance protein; KEGG: dde:Dde_1247 femAB family protein
YP_002437334.1	KEGG: dac:Daci_2118 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: xylose isomerase
YP_002437335.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dra:DR_0815 GntR family transcriptional regulator
YP_002437336.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002437337.1	KEGG: dde:Dde_2740 hypothetical protein
YP_002437338.1	PFAM: glutaredoxin; KEGG: dde:Dde_2739 hypothetical protein
YP_002437339.1	KEGG: dde:Dde_2738 hypothetical protein
YP_002437340.1	PFAM: PfkB domain protein; KEGG: dde:Dde_1489 carbohydrate kinase
YP_002437341.1	PFAM: CutA1 divalent ion tolerance protein; KEGG: dde:Dde_1490 periplasmic divalent cation tolerance protein CutA
YP_002437342.1	KEGG: dde:Dde_1491 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; endonuclease III/Nth
YP_002437343.1	KEGG: dde:Dde_1492 hypothetical protein
YP_002437344.1	PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_1493 response regulator receiver (CheY-like) modulated CheW protein
YP_002437345.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein
YP_002437346.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_002437347.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_002437348.1	KEGG: dde:Dde_1499 hypothetical protein
YP_002437349.1	KEGG: rfr:Rfer_2442 hypothetical protein
YP_002437350.1	PFAM: cupin; KEGG: mes:Meso_3909 cupin 2, conserved barrel
YP_002437351.1	KEGG: ade:Adeh_3213 hypothetical protein
YP_002437352.1	PFAM: carboxymuconolactone decarboxylase; KEGG: gbm:Gbem_3979 carboxymuconolactone decarboxylase
YP_002437353.1	PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator; KEGG: emi:Emin_0877 AraC family transcriptional regulator
YP_002437354.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_002437355.1	PFAM: flagellin domain protein; KEGG: dde:Dde_1502 flagellin
YP_002437356.1	KEGG: dde:Dde_1503 hypothetical protein
YP_002437357.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1504 metal dependent phosphohydrolase
YP_002437358.1	PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1335 ABC transporter permease
YP_002437359.1	PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0268 ABC-type transporter, permease
YP_002437360.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1339 ATPase
YP_002437361.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: dde:Dde_1340 secretion protein HlyD
YP_002437362.1	KEGG: dde:Dde_1342 hypothetical protein
YP_002437363.1	PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1343 HSP20 family protein
YP_002437364.1	PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1344 HSP20 family protein
YP_002437365.1	PFAM: Mg2 transporter protein CorA family protein; KEGG: lip:LI0097 CorA, CorA-like Mg2+ transporter protein
YP_002437366.1	KEGG: dde:Dde_1345 hypothetical protein
YP_002437367.1	TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; KEGG: rci:RCIX2221 nucleoside 5'-monophosphate phosphohydrolase (survival protein)
YP_002437368.1	KEGG: dps:DP3110 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002437369.1	PFAM: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1
YP_002437370.1	PFAM: 17 kDa surface antigen; KEGG: dde:Dde_1150 outer membrane lipoprotein-like
YP_002437371.1	KEGG: dde:Dde_1349 hypothetical protein
YP_002437372.1	TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1350 RarD protein
YP_002437373.1	PFAM: extracellular solute-binding protein family 1; KEGG: sit:TM1040_3635 extracellular solute-binding protein, family 1
YP_002437374.1	PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: hch:HCH_01472 ABC-type spermidine/putrescine transporter, ATPase components
YP_002437375.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: hch:HCH_01473 ABC-type spermidine/putrescine transporter, permease I
YP_002437376.1	PFAM: binding-protein-dependent transporters inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transporter, permease II
YP_002437377.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sfu:Sfum_0868 glycerophosphoryl diester phosphodiesterase
YP_002437378.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: ava:Ava_1542 hypothetical protein
YP_002437379.1	PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352  transcriptional regulator
YP_002437380.1	PFAM: nitroreductase; KEGG: mba:Mbar_A1379 NADPH-flavin oxidoreductase
YP_002437381.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: msi:Msm_0688 4-oxalocrotonate tautomerase
YP_002437382.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pca:Pcar_0069 NADH:flavin oxidoreductases, Old Yellow enzyme family
YP_002437383.1	KEGG: dde:Dde_1354 hypothetical protein
YP_002437384.1	PFAM: NADPH-dependent FMN reductase; KEGG: mbn:Mboo_0650 NADPH-dependent FMN reductase
YP_002437385.1	PFAM: rhodanese; KEGG: dde:Dde_1355 rhodanese-like protein
YP_002437386.1	PFAM: VanZ family protein; KEGG: xfn:XfasM23_0713 VanZ family protein
YP_002437387.1	PFAM: SlyX family protein; KEGG: dde:Dde_1356 SlyX protein
YP_002437388.1	PFAM: protein of unknown function DUF55; KEGG: dde:Dde_1357 hypothetical protein
YP_002437389.1	KEGG: rno:84352 collagen, type I, alpha 2
YP_002437390.1	PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1359 elongator protein 3/MiaB/NifB
YP_002437391.1	KEGG: dde:Dde_1360 GAF sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_002437392.1	KEGG: dde:Dde_1362 EF hand domain-containing protein
YP_002437393.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer
YP_002437394.1	PFAM: Na+/H+ antiporter NhaA; KEGG: dde:Dde_2771 Na+/H+ antiporter NhaA
YP_002437395.1	PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: rpe:RPE_0932 isoprenylcysteine carboxyl methyltransferase
YP_002437396.1	PFAM: radical SAM protein; KEGG: pcl:Pcal_0853 radical SAM protein
YP_002437397.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rca:Rcas_0372 ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_002437398.1	TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_1365 lysyl-tRNA synthetase
YP_002437399.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1366 LolC/E family lipoprotein releasing system, transmembrane protein
YP_002437400.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1367 ATPase
YP_002437401.1	TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dde:Dde_1368 OMP85 family outer membrane protein
YP_002437402.1	PFAM: cell wall hydrolase/autolysin; KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase
YP_002437403.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: dde:Dde_1371 outer membrane protein OmpH
YP_002437404.1	TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: dde:Dde_1372 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_002437405.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_002437406.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_002437407.1	PFAM: protein of unknown function DUF1009; KEGG: dde:Dde_1375 hypothetical protein
YP_002437408.1	PFAM: aminotransferase class I and II; KEGG: rci:RRC4  aminotransferase
YP_002437409.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mla:Mlab_1007 hypothetical protein
YP_002437410.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cbf:CLI_0717 transcriptional regulator, GntR family/aminotransferase
YP_002437411.1	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP
YP_002437412.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_002437413.1	PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_1380 hypothetical protein
YP_002437414.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1381 ferric reductase-like
YP_002437415.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_1399 ATPase
YP_002437416.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; KEGG: dde:Dde_1400  signal transduction protein
YP_002437417.1	KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I
YP_002437418.1	KEGG: pma:Pro1264 hypothetical protein
YP_002437419.1	KEGG: mac:MA2205 hypothetical protein
YP_002437420.1	PFAM: aminotransferase class I and II; KEGG: dde:Dde_1401 L-threonine O-3-phosphate decarboxylase
YP_002437421.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1402 glycosyl transferase, group 1 family protein
YP_002437422.1	PFAM: glycosyl transferase group 1; KEGG: lip:LI0824 glycosyltransferase
YP_002437423.1	PFAM: O-antigen polymerase; KEGG: lip:LI0825 lipid A core-O-antigen ligase and related enzymes
YP_002437424.1	PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0593 glycosyl transferase, group 1 family protein
YP_002437425.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: dde:Dde_1405 two component Fis family transcriptional regulator
YP_002437426.1	Catalyzes the conversion of citrate to isocitrate
YP_002437427.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dde:Dde_1407 peptidyl-prolyl cis-trans isomerse domain-containing protein
YP_002437428.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cte:CT0498 ammonium transporter
YP_002437429.1	PFAM: nitrogen regulatory protein P-II; KEGG: sul:SYO3AOP1_0047 nitrogen regulatory protein P-II
YP_002437430.1	catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively
YP_002437431.1	PFAM: basic membrane lipoprotein; KEGG: dde:Dde_1507 Bmp family membrane protein
YP_002437432.1	PFAM: inner-membrane translocator; KEGG: dde:Dde_1508 branched-chain amino acid ABC transporter permease
YP_002437433.1	PFAM: inner-membrane translocator; KEGG: dde:Dde_1509 branched chain amino acid ABC transporter permease
YP_002437434.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1510 ATPase
YP_002437435.1	TIGRFAM: regulatory protein, FmdB family; PFAM:  regulatory protein FmdB; KEGG: ank:AnaeK_2303 regulatory protein, FmdB family
YP_002437436.1	TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dde:Dde_1169 peptidase C56, PfpI
YP_002437437.1	PFAM: dienelactone hydrolase; KEGG: gbm:Gbem_2303 dienelactone hydrolase
YP_002437438.1	KEGG: lip:LI0093 hypothetical protein
YP_002437439.1	KEGG: dde:Dde_2525 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase
YP_002437440.1	PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein
YP_002437441.1	PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: dde:Dde_1301 thiol:disulfide interchange protein-like
YP_002437442.1	KEGG: wsu:WS1185 hypothetical protein
YP_002437443.1	PFAM: regulatory protein TetR; KEGG: gme:Gmet_0803 TetR family transcriptional regulator
YP_002437444.1	PFAM: peptidase M24; KEGG: dde:Dde_1305 M24 family peptidase
YP_002437445.1	KEGG: dde:Dde_1304 coenzyme A binding protein
YP_002437446.1	PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_1303 hypothetical protein
YP_002437447.1	PFAM: heat shock protein DnaJ domain protein; KEGG: dde:Dde_1302 heat shock protein DnaJ-like
YP_002437448.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_2856 hypothetical protein
YP_002437449.1	KEGG: dde:Dde_2854 hypothetical protein
YP_002437450.1	KEGG: dde:Dde_1443 hypothetical protein
YP_002437451.1	PFAM: cobalbumin biosynthesis protein; KEGG: gme:Gmet_0466 adenosylcobinamide kinase
YP_002437452.1	KEGG: lip:LI0104 NA
YP_002437454.1	PFAM: protein of unknown function DUF554; KEGG: dde:Dde_2488 hypothetical protein
YP_002437455.1	TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter related; KEGG: dde:Dde_2486 excinuclease ABC subunit A
YP_002437456.1	PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein
YP_002437457.1	KEGG: sfu:Sfum_1959  molybdenum ABC transporter solute-binding protein
YP_002437458.1	KEGG: sfu:Sfum_1960 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_002437459.1	PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB
YP_002437460.1	TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; KEGG: eba:ebA872  peptide methionine sulfoxide reductase MsrA
YP_002437461.1	PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_2481 hypothetical protein
YP_002437462.1	PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: glo:Glov_2618 DEAD/DEAH box helicase
YP_002437463.1	nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_002437464.1	KEGG: dde:Dde_2478 hypothetical protein
YP_002437465.1	PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer
YP_002437466.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2477 ATPase
YP_002437467.1	PFAM: Na+/H+ antiporter NhaC; KEGG: dde:Dde_2476 Na+/H+ antiporter family protein
YP_002437468.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_002437469.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_002437470.1	KEGG: dde:Dde_2471 HAD family hydrolase
YP_002437471.1	KEGG: dde:Dde_2470 hypothetical protein
YP_002437472.1	PFAM: virulence factor MVIN family protein; KEGG: dde:Dde_2468 integral membrane protein MviN
YP_002437473.1	KEGG: dde:Dde_2464 hypothetical protein
YP_002437475.1	KEGG: dde:Dde_2462 hypothetical protein
YP_002437476.1	PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_0818 hypothetical protein
YP_002437477.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3097 two component Fis family transcriptional regulator
YP_002437478.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer
YP_002437479.1	KEGG: dde:Dde_2457 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region
YP_002437480.1	SMART: PAS domain containing protein; KEGG: dde:Dde_2456  PAS/PAC sensor protein
YP_002437481.1	PFAM: metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_2455 metal dependent phosphohydrolase
YP_002437482.1	PFAM: colicin V production protein; KEGG: dde:Dde_2454 colicin V production family protein
YP_002437483.1	functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era
YP_002437484.1	KEGG: dde:Dde_2452 hypothetical protein
YP_002437485.1	KEGG: dde:Dde_2451 hypothetical protein
YP_002437486.1	KEGG: dde:Dde_2449 hypothetical protein
YP_002437487.1	PFAM: protein of unknown function UPF0118; KEGG: dde:Dde_2448 hypothetical protein
YP_002437488.1	KEGG: dde:Dde_2447 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_002437489.1	KEGG: dde:Dde_2444 Lon-A peptidase; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA central domain protein; ATPase AAA; SMART: AAA ATPase
YP_002437490.1	PFAM: acylphosphatase; KEGG: sru:SRU_2068 acylphosphatase
YP_002437491.1	PFAM: DNA repair protein RadC; KEGG: dde:Dde_2442 DNA repair protein RadC
YP_002437493.1	KEGG: dde:Dde_2441 hypothetical protein
YP_002437494.1	KEGG: dde:Dde_2440  lipoprotein
YP_002437495.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_002437496.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: dde:Dde_2438 transcription antitermination factor NusB
YP_002437497.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_002437498.1	KEGG: dde:Dde_2436 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II
YP_002437499.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_002437500.1	TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: dde:Dde_2434 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase
YP_002437501.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_2433 cytidine/deoxycytidylate deaminase family protein
YP_002437502.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_002437503.1	TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: dde:Dde_2431 3-oxoacyl-[acyl-carrier-protein] synthase II
YP_002437504.1	carries the fatty acid chain in fatty acid biosynthesis
YP_002437505.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dde:Dde_2429 3-oxoacyl-[acyl-carrier-protein] reductase
YP_002437506.1	KEGG: dde:Dde_2428 3-oxoacyl-[acyl-carrier-protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YP_002437507.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_002437508.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_002437509.1	PFAM: protein of unknown function DUF177; KEGG: dde:Dde_2426 hypothetical protein
YP_002437510.1	required for 70S ribosome assembly
YP_002437511.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_2424 hypothetical protein
YP_002437512.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: dde:Dde_2422 FxsA protein
YP_002437513.1	PFAM: rhomboid family protein; KEGG: dde:Dde_2421 rhomboid family protein
YP_002437514.1	KEGG: dde:Dde_2420 dolichyl-phosphate-mannose-protein mannosyltransferase family protein
YP_002437515.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2418 MATE efflux family protein
YP_002437516.1	PFAM: protein of unknown function DUF77; KEGG: mgm:Mmc1_2182 protein of unknown function DUF77
YP_002437517.1	PFAM: protein of unknown function DUF115; KEGG: dde:Dde_2415 hypothetical protein
YP_002437518.1	KEGG: dde:Dde_2414 hypothetical protein
YP_002437519.1	PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2413 nitroreductase family protein
YP_002437520.1	TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer
YP_002437521.1	KEGG: dde:Dde_2410 hypothetical protein
YP_002437522.1	PFAM: gamma-glutamyltranspeptidase; KEGG: xcb:XC_0301 gamma-glutamyltranspeptidase
YP_002437523.1	PFAM: protein of unknown function DUF181; KEGG: dde:Dde_2408 hypothetical protein
YP_002437524.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_002437525.1	KEGG: dde:Dde_1466  lipoprotein
YP_002437526.1	PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dde:Dde_1467 imidazoleglycerol-phosphate dehydratase
YP_002437527.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dde:Dde_1468 sec-independent protein translocase TatC
YP_002437528.1	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dde:Dde_1469 twin-arginine translocation protein TatB
YP_002437529.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_002437530.1	KEGG: dde:Dde_1471 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase
YP_002437531.1	PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1473 hypothetical protein
YP_002437533.1	PFAM: cytochrome C assembly protein; KEGG: dde:Dde_1474 cytochrome C biogenesis protein CcmC
YP_002437534.1	PFAM: cytochrome C biogenesis protein CcmB; KEGG: dde:Dde_1475 cytochrome C biogenesis protein CcmB
YP_002437535.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1476 ATPase
YP_002437536.1	PFAM: cytochrome C assembly protein; KEGG: dde:Dde_1477 cytochrome C biogenesis protein CcmF
YP_002437537.1	KEGG: dde:Dde_1478 cytochrome C biogenesis protein CcmE
YP_002437538.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: dde:Dde_1479 CBS
YP_002437539.1	TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dde:Dde_1481 HAD family hydrolase
YP_002437540.1	TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1482 heptosyltransferase family protein
YP_002437541.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dps:DP0756 ABC transporter ATP-binding protein
YP_002437542.1	TIGRFAM: cobalt ABC transporter inner membrane protein CbiQ; PFAM: cobalt transporter; KEGG: dde:Dde_1192 cobalt ABC transporter permease
YP_002437543.1	catalyzes the ATP-dependent transport of cobalt
YP_002437544.1	PFAM: citrate transporter; KEGG: dde:Dde_1483 hypothetical protein
YP_002437545.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1484 tRNA (guanosine-2'-O-)-methyltransferase
YP_002437546.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1485 glycosyl transferase, group 2 family protein
YP_002437547.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1486 glycosyl transferase, group 2 family protein
YP_002437548.1	PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1487 glycosyl transferase, group 2 family protein
YP_002437549.1	TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine
YP_002437550.1	PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1423  polar amino acid transporter substrate-binding proetin
YP_002437551.1	KEGG: dde:Dde_1424 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35
YP_002437552.1	TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: dde:Dde_1425 deoxyuridine 5'-triphosphate nucleotidohydrolase
YP_002437553.1	catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_002437554.1	KEGG: dde:Dde_1427 hypothetical protein
YP_002437555.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1428 ATPase
YP_002437556.1	PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1429 extracellular solute-binding protein
YP_002437557.1	TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_1430 amino acid ABC transporter permease
YP_002437558.1	TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_1431 amino acid ABC transporter permease
YP_002437559.1	PFAM: ribosomal L11 methyltransferase; KEGG: dde:Dde_1432 50S ribosomal protein L11P methyltransferase
YP_002437560.1	PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: dde:Dde_1435 DNA-3-methyladenine glycosylase III
YP_002437561.1	PFAM: peptidase M23; KEGG: dde:Dde_1436 M24/M37 family peptidase
YP_002437562.1	KEGG: dde:Dde_1437 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41
YP_002437563.1	PFAM: protein of unknown function DUF610 YibQ; KEGG: dde:Dde_1438 hypothetical protein
YP_002437564.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_002437565.1	KEGG: dde:Dde_1440 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding
YP_002437566.1	PFAM: Smr protein/MutS2; KEGG: dde:Dde_1441 Smr protein/MutS2-like
YP_002437567.1	TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: dde:Dde_1442 signal peptide peptidase A
YP_002437568.1	PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_1306 hypothetical protein
YP_002437569.1	TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dde:Dde_1307 hydrogenase accessory protein HypB
YP_002437570.1	PFAM: hydrogenase expression/synthesis HypA; KEGG: dde:Dde_1308 hydrogenase nickel insertion protein HypA
YP_002437571.1	PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1309 TPR domain-containing protein
YP_002437572.1	KEGG: dde:Dde_1310 hypothetical protein
YP_002437573.1	PFAM: Heavy metal transport/detoxification protein; KEGG: dde:Dde_1312 mercuric transporter periplasmic component
YP_002437574.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; ATPase P; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dde:Dde_1313 heavy metal translocating P-type ATPase
YP_002437575.1	KEGG: dde:Dde_1314 hypothetical protein
YP_002437576.1	PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: dde:Dde_1315 UTP--glucose-1-phosphate uridylyltransferase
YP_002437577.1	PFAM: carboxylyase-related protein; KEGG: dde:Dde_1323 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein
YP_002437578.1	PFAM: transcriptional regulator; KEGG: mca:MCA2330 DNA-binding response regulator
YP_002437579.1	PFAM: rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_1320 rubrerythrin
YP_002437580.1	KEGG: dde:Dde_1318 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein
YP_002437581.1	PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: dde:Dde_1317 hypothetical protein
YP_002437582.1	TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: dde:Dde_1324 6-phosphogluconolactonase
YP_002437583.1	PFAM: OsmC family protein; KEGG: cte:CT0949 hypothetical protein
YP_002437584.1	PFAM: beta-lactamase; KEGG: dde:Dde_1331 metallo-beta-lactamase family protein
YP_002437585.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_3020 methyl-accepting chemotaxis sensory transducer
YP_002437586.1	PFAM: conserved hypothetical protein; KEGG: cts:Ctha_1725 hypothetical protein
YP_002437587.1	TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: dde:Dde_2519 TraR/DksA family transcriptional regulator
YP_002437588.1	PFAM: cupin; KEGG: mes:Meso_2098 transcriptional regulator
YP_002437589.1	PFAM: phosphate transporter; KEGG: lip:LI0811 phosphate/sulfate permeases
YP_002437590.1	PFAM: protein of unknown function DUF47; KEGG: sfu:Sfum_2274 protein of unknown function DUF47
YP_002437591.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rru:Rru_A1426 4Fe-4S ferredoxin iron-sulfur binding
YP_002437592.1	TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: gbm:Gbem_0070 hydrogenase nickel insertion protein HypA
YP_002437593.1	PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: chy:CHY_1827 carbon monoxide-induced hydrogenase, large subunit
YP_002437594.1	PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: chy:CHY_1828 carbon monoxide-induced hydrogenase, CooU subunit
YP_002437595.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_1829 carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit
YP_002437596.1	PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rru:Rru_A1422 NADH ubiquinone oxidoreductase, 20 kDa subunit
YP_002437597.1	PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: chy:CHY_1831 carbon monoxide-induced hydrogenase, CooK subunit
YP_002437598.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: chy:CHY_1832 carbon monoxide-induced hydrogenase, membrane anchor subunit
YP_002437599.1	PFAM: small multidrug resistance protein; KEGG: nha:Nham_1679 small multidrug resistance protein
YP_002437600.1	KEGG: dde:Dde_3620 amino acid ABC transporter periplasmic protein
YP_002437601.1	PFAM: Domain of unknown function DUF1791; KEGG: dde:Dde_2602 hypothetical protein
YP_002437602.1	KEGG: dde:Dde_2445 hypothetical protein
YP_002437603.1	KEGG: dde:Dde_2327 hypothetical protein
YP_002437604.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dde:Dde_2326 ribosomal RNA large subunit methyltransferase J
YP_002437605.1	PFAM: protein of unknown function DUF28; KEGG: dde:Dde_2325 hypothetical protein
YP_002437606.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_002437607.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb3563 C4-dicarboxylate transport sensor protein DctB
YP_002437608.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_002437609.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_002437610.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor