-- dump date 20120504_143446 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 883000001 SEQ_END SEQ_END NC_011769.1 4040304 4040304 DR NC_011769.1; contig end 4040304..4040304 Desulfovibrio vulgaris str. 'Miyazaki F' YP_002434431.1 CDS DvMF_0001 NC_011769.1 4 1500 D KEGG: dde:Dde_2320 DnaA family protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA 4..1500 Desulfovibrio vulgaris str. 'Miyazaki F' 7175154 YP_002434432.1 CDS DvMF_0002 NC_011769.1 1771 2325 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_2318 transcriptional regulator; XRE family transcriptional regulator 1771..2325 Desulfovibrio vulgaris str. 'Miyazaki F' 7171869 YP_002434433.1 CDS DvMF_0003 NC_011769.1 2583 4256 D PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2317 AMP-binding protein; AMP-dependent synthetase and ligase 2583..4256 Desulfovibrio vulgaris str. 'Miyazaki F' 7171870 YP_002434434.1 CDS DvMF_0004 NC_011769.1 4555 6309 R PFAM: hypothetical protein; protein of unknown function DUF181; hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_2348 hypothetical protein; hypothetical protein complement(4555..6309) Desulfovibrio vulgaris str. 'Miyazaki F' 7171871 YP_002434435.1 CDS DvMF_0005 NC_011769.1 6402 7196 R PFAM: methyltransferase small; KEGG: sfu:Sfum_0452 methyltransferase type 12; methyltransferase complement(6402..7196) Desulfovibrio vulgaris str. 'Miyazaki F' 7171872 YP_002434436.1 CDS DvMF_0006 NC_011769.1 7599 8240 R KEGG: shw:Sputw3181_0818 GCN5-related N-acetyltransferase; hypothetical protein complement(7599..8240) Desulfovibrio vulgaris str. 'Miyazaki F' 7171873 YP_002434437.1 CDS DvMF_0007 NC_011769.1 9037 9444 D PFAM: protein of unknown function DUF302; KEGG: dde:Dde_3562 hypothetical protein; hypothetical protein 9037..9444 Desulfovibrio vulgaris str. 'Miyazaki F' 7171875 YP_002434438.1 CDS DvMF_0008 NC_011769.1 10369 10731 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: dde:Dde_2345 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 10369..10731 Desulfovibrio vulgaris str. 'Miyazaki F' 7171880 YP_002434439.1 CDS DvMF_0009 NC_011769.1 10937 12919 D PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: dde:Dde_2344 hypothetical protein; hypothetical protein 10937..12919 Desulfovibrio vulgaris str. 'Miyazaki F' 7171881 YP_002434440.1 CDS DvMF_0010 NC_011769.1 13084 14547 D PFAM: EAL domain protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2343 diguanylate phosphodiesterase; diguanylate phosphodiesterase 13084..14547 Desulfovibrio vulgaris str. 'Miyazaki F' 7171882 YP_002434441.1 CDS DvMF_0011 NC_011769.1 14550 15929 D PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: gvi:glr2358 L-serine dehydratase; serine dehydratase subunit alpha 14550..15929 Desulfovibrio vulgaris str. 'Miyazaki F' 7171883 YP_002434442.1 CDS DvMF_0012 NC_011769.1 16161 17159 R KEGG: dde:Dde_2342 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(16161..17159) Desulfovibrio vulgaris str. 'Miyazaki F' 7171884 YP_002434443.1 CDS DvMF_0013 NC_011769.1 17181 18104 R KEGG: dde:Dde_2341 fructose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase complement(17181..18104) Desulfovibrio vulgaris str. 'Miyazaki F' 7171885 YP_002434444.1 CDS DvMF_0014 NC_011769.1 18759 21203 D PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: glo:Glov_3394 pyruvate phosphate dikinase PEP/pyruvate-binding; hypothetical protein 18759..21203 Desulfovibrio vulgaris str. 'Miyazaki F' 7171886 YP_002434445.1 CDS DvMF_0015 NC_011769.1 21211 21834 D PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: glo:Glov_3393 peptidase C26; peptidase C26 21211..21834 Desulfovibrio vulgaris str. 'Miyazaki F' 7171887 YP_002434446.1 CDS DvMF_0016 NC_011769.1 21831 22622 D KEGG: glo:Glov_3392 transferase; transferase 21831..22622 Desulfovibrio vulgaris str. 'Miyazaki F' 7171888 YP_002434447.1 CDS DvMF_0017 NC_011769.1 22694 23458 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: wsu:WS2181 hypothetical protein; methyltransferase type 11 22694..23458 Desulfovibrio vulgaris str. 'Miyazaki F' 7171889 YP_002434448.1 CDS DvMF_0018 NC_011769.1 23462 24049 D PFAM: adenylylsulfate kinase; KEGG: pfo:PflO1_5510 adenylylsulfate kinase; adenylylsulfate kinase 23462..24049 Desulfovibrio vulgaris str. 'Miyazaki F' 7171890 YP_002434449.1 CDS DvMF_0019 NC_011769.1 24087 25421 D hypothetical protein 24087..25421 Desulfovibrio vulgaris str. 'Miyazaki F' 7171891 YP_002434450.1 CDS DvMF_0020 NC_011769.1 25558 26634 R hypothetical protein complement(25558..26634) Desulfovibrio vulgaris str. 'Miyazaki F' 7171892 YP_002434451.1 CDS DvMF_0021 NC_011769.1 26913 27722 R KEGG: dde:Dde_2340 exopolyphosphatase / 3'-nucleotidase / 5'-nucleotidase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE complement(26913..27722) Desulfovibrio vulgaris str. 'Miyazaki F' 7171893 YP_002434452.1 CDS DvMF_0022 NC_011769.1 28080 29165 D KEGG: dde:Dde_2339 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 28080..29165 Desulfovibrio vulgaris str. 'Miyazaki F' 7171894 YP_002434453.1 CDS DvMF_0023 NC_011769.1 29224 29871 D PFAM: thymidylate kinase; KEGG: dde:Dde_2338 thymidylate kinase; dTMP kinase 29224..29871 Desulfovibrio vulgaris str. 'Miyazaki F' 7171895 YP_002434454.1 CDS DvMF_0024 NC_011769.1 29953 31272 D PFAM: histone deacetylase superfamily; KEGG: dde:Dde_2337 histone deacetylase family protein; histone deacetylase 29953..31272 Desulfovibrio vulgaris str. 'Miyazaki F' 7171896 YP_002434455.1 CDS DvMF_0025 NC_011769.1 31317 32003 D PFAM: protein of unknown function DUF1121; KEGG: dde:Dde_2335 hypothetical protein; hypothetical protein 31317..32003 Desulfovibrio vulgaris str. 'Miyazaki F' 7171897 YP_002434456.1 CDS DvMF_0026 NC_011769.1 32239 34368 D TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: CoA-binding protein; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: dde:Dde_2334 succinyl-CoA synthetase (ADP-forming) alpha subunit / succinyl-CoA synthetase (ADP-forming) subunit beta; succinyl-CoA synthetase subunit alpha 32239..34368 Desulfovibrio vulgaris str. 'Miyazaki F' 7171898 YP_002434457.1 CDS DvMF_0027 NC_011769.1 34593 36311 D TIGRFAM: indolepyruvate/phenylpyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: dde:Dde_2331 phenylpyruvate decarboxylase; indolepyruvate/phenylpyruvate decarboxylase 34593..36311 Desulfovibrio vulgaris str. 'Miyazaki F' 7171899 YP_002434458.1 CDS DvMF_0028 NC_011769.1 36449 37012 R KEGG: dde:Dde_1347 hypothetical protein; hypothetical protein complement(36449..37012) Desulfovibrio vulgaris str. 'Miyazaki F' 7171900 YP_002434459.1 CDS DvMF_0029 NC_011769.1 37215 37841 R KEGG: dame:34012.; hypothetical protein complement(37215..37841) Desulfovibrio vulgaris str. 'Miyazaki F' 7171901 YP_002434460.1 CDS DvMF_0030 NC_011769.1 38598 38939 R KEGG: rci:LRC585 hypothetical protein; hypothetical protein complement(38598..38939) Desulfovibrio vulgaris str. 'Miyazaki F' 7171902 YP_002434461.1 CDS DvMF_0031 NC_011769.1 39238 39513 D hypothetical protein 39238..39513 Desulfovibrio vulgaris str. 'Miyazaki F' 7171903 YP_002434462.1 CDS DvMF_0032 NC_011769.1 39790 41526 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: har:HEAR1631 hypothetical protein; diguanylate cyclase 39790..41526 Desulfovibrio vulgaris str. 'Miyazaki F' 7171904 YP_002434463.1 CDS DvMF_0034 NC_011769.1 43413 45029 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_3923 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 43413..45029 Desulfovibrio vulgaris str. 'Miyazaki F' 7171906 YP_002434464.1 CDS DvMF_0035 NC_011769.1 45068 46282 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: sfu:Sfum_3921 efflux transporter RND family, MFP subunit; RND family efflux transporter MFP subunit 45068..46282 Desulfovibrio vulgaris str. 'Miyazaki F' 7171907 YP_002434465.1 CDS DvMF_0036 NC_011769.1 46313 49459 D TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_3922 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 46313..49459 Desulfovibrio vulgaris str. 'Miyazaki F' 7171908 YP_002434466.1 CDS DvMF_0037 NC_011769.1 49462 50142 D KEGG: sat:SYN_02957 hypothetical membrane protein; hypothetical protein 49462..50142 Desulfovibrio vulgaris str. 'Miyazaki F' 7171909 YP_002434467.1 CDS DvMF_0038 NC_011769.1 50269 51414 D PFAM: protein of unknown function DUF140; KEGG: sat:SYN_02070 ABC transporter permease; hypothetical protein 50269..51414 Desulfovibrio vulgaris str. 'Miyazaki F' 7171910 YP_002434468.1 CDS DvMF_0039 NC_011769.1 51411 52319 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_2415 ABC transporter; ABC transporter 51411..52319 Desulfovibrio vulgaris str. 'Miyazaki F' 7171911 YP_002434469.1 CDS DvMF_0040 NC_011769.1 52319 53302 D PFAM: hypothetical protein; KEGG: dde:Dde_1983 hypothetical protein; hypothetical protein 52319..53302 Desulfovibrio vulgaris str. 'Miyazaki F' 7171912 YP_002434470.1 CDS DvMF_0041 NC_011769.1 53446 54039 D PFAM: protein of unknown function DUF330; KEGG: mca:MCA0364 lipoprotein; hypothetical protein 53446..54039 Desulfovibrio vulgaris str. 'Miyazaki F' 7171913 YP_002434471.1 CDS DvMF_0042 NC_011769.1 54126 55274 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mca:MCA0504 GGDEF domain-containing protein; diguanylate cyclase 54126..55274 Desulfovibrio vulgaris str. 'Miyazaki F' 7171914 YP_002434472.1 CDS DvMF_0043 NC_011769.1 57479 59059 D KEGG: dde:Dde_2536 hypothetical protein; hypothetical protein 57479..59059 Desulfovibrio vulgaris str. 'Miyazaki F' 7171916 YP_002434473.1 CDS DvMF_0044 NC_011769.1 59166 59999 R PFAM: ApbE family lipoprotein; KEGG: dde:Dde_2535 hypothetical protein; hypothetical protein complement(59166..59999) Desulfovibrio vulgaris str. 'Miyazaki F' 7171917 YP_002434474.1 CDS DvMF_0045 NC_011769.1 60152 61366 D PFAM: endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 60152..61366 Desulfovibrio vulgaris str. 'Miyazaki F' 7171918 YP_002434475.1 CDS DvMF_0046 NC_011769.1 61659 62561 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 61659..62561 Desulfovibrio vulgaris str. 'Miyazaki F' 7171919 YP_002434476.1 CDS DvMF_0047 NC_011769.1 62630 63835 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 62630..63835 Desulfovibrio vulgaris str. 'Miyazaki F' 7171920 YP_002434477.1 CDS DvMF_0048 NC_011769.1 63998 65380 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 63998..65380 Desulfovibrio vulgaris str. 'Miyazaki F' 7171921 YP_002434478.1 CDS DvMF_0049 NC_011769.1 65645 66274 D KEGG: cre:CHLREDRAFT_146629 hypothetical protein PROSITE: ALA_RICH; hypothetical protein 65645..66274 Desulfovibrio vulgaris str. 'Miyazaki F' 7171922 YP_002434479.1 CDS DvMF_0050 NC_011769.1 66553 66819 D PFAM: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein 66553..66819 Desulfovibrio vulgaris str. 'Miyazaki F' 7171923 YP_002434480.1 CDS DvMF_0051 NC_011769.1 67046 67840 R PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_1507 amino acid ABC transporter periplasmic protein; family 3 extracellular solute-binding protein complement(67046..67840) Desulfovibrio vulgaris str. 'Miyazaki F' 7171924 YP_002434481.1 CDS DvMF_0052 NC_011769.1 68597 68755 D KEGG: dde:Dde_3728 hypothetical protein; hypothetical protein 68597..68755 Desulfovibrio vulgaris str. 'Miyazaki F' 7171925 YP_002434482.1 CDS DvMF_0053 NC_011769.1 69339 70088 D KEGG: hch:HCH_03353 hypothetical protein; hypothetical protein 69339..70088 Desulfovibrio vulgaris str. 'Miyazaki F' 7171926 YP_002434483.1 CDS DvMF_0054 NC_011769.1 70353 70790 R hypothetical protein complement(70353..70790) Desulfovibrio vulgaris str. 'Miyazaki F' 7171927 YP_002434484.1 CDS DvMF_0055 NC_011769.1 71779 73794 D KEGG: dde:Dde_1513 FtsH peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; ATP-dependent metalloprotease FtsH 71779..73794 Desulfovibrio vulgaris str. 'Miyazaki F' 7171929 YP_002434485.1 CDS DvMF_0056 NC_011769.1 73791 74789 D KEGG: dde:Dde_1514 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 73791..74789 Desulfovibrio vulgaris str. 'Miyazaki F' 7171930 YP_002434486.1 CDS DvMF_0057 NC_011769.1 74789 75532 D PFAM: protein of unknown function DUF147; KEGG: dde:Dde_1515 hypothetical protein; hypothetical protein 74789..75532 Desulfovibrio vulgaris str. 'Miyazaki F' 7171931 YP_002434487.1 CDS DvMF_0058 NC_011769.1 75535 76434 D PFAM: YbbR family protein; KEGG: dde:Dde_1516 hypothetical protein; hypothetical protein 75535..76434 Desulfovibrio vulgaris str. 'Miyazaki F' 7171932 YP_002434488.1 CDS glmM NC_011769.1 76660 78012 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 76660..78012 Desulfovibrio vulgaris str. 'Miyazaki F' 7171933 YP_002434489.1 CDS DvMF_0060 NC_011769.1 78141 79016 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: dde:Dde_1518 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase 78141..79016 Desulfovibrio vulgaris str. 'Miyazaki F' 7171934 YP_002434490.1 CDS DvMF_0061 NC_011769.1 79119 81539 D KEGG: dde:Dde_1519 replication restart DNA helicase PriA; TIGRFAM: primosomal protein N'; PFAM: helicase; type III restriction protein res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases; primosomal protein N' 79119..81539 Desulfovibrio vulgaris str. 'Miyazaki F' 7171935 YP_002434491.1 CDS DvMF_0062 NC_011769.1 81573 81740 D KEGG: dde:Dde_1520 hypothetical protein; hypothetical protein 81573..81740 Desulfovibrio vulgaris str. 'Miyazaki F' 7171936 YP_002434492.1 CDS DvMF_0063 NC_011769.1 81899 82291 D PFAM: response regulator receiver; KEGG: dde:Dde_1521 response regulator receiver domain-containing protein; response regulator receiver protein 81899..82291 Desulfovibrio vulgaris str. 'Miyazaki F' 7171937 YP_002434493.1 CDS DvMF_0064 NC_011769.1 82288 84084 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_1522 histidine kinase; histidine kinase 82288..84084 Desulfovibrio vulgaris str. 'Miyazaki F' 7171938 YP_002434494.1 CDS DvMF_0065 NC_011769.1 84586 85872 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 84586..85872 Desulfovibrio vulgaris str. 'Miyazaki F' 7171939 YP_002434495.1 CDS DvMF_0066 NC_011769.1 86413 87576 R PFAM: polysulphide reductase NrfD; KEGG: dde:Dde_2275 reductase, transmembrane subunit; polysulphide reductase NrfD complement(86413..87576) Desulfovibrio vulgaris str. 'Miyazaki F' 7171940 YP_002434496.1 CDS DvMF_0067 NC_011769.1 87588 88367 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2274 reductase, iron-sulfur binding subunit; 4Fe-4S ferredoxin complement(87588..88367) Desulfovibrio vulgaris str. 'Miyazaki F' 7171941 YP_002434497.1 CDS DvMF_0068 NC_011769.1 88367 88747 R KEGG: dde:Dde_2273 cytochrome C family protein; cytochrome C family protein complement(88367..88747) Desulfovibrio vulgaris str. 'Miyazaki F' 7171942 YP_002434498.1 CDS DvMF_0069 NC_011769.1 88750 90360 R KEGG: dde:Dde_2272 reductase, iron-sulfur binding subunit; reductase, iron-sulfur binding subunit complement(88750..90360) Desulfovibrio vulgaris str. 'Miyazaki F' 7171943 YP_002434499.1 CDS DvMF_0070 NC_011769.1 90370 91377 R PFAM: nitrate reductase subunit gamma; KEGG: dde:Dde_2271 nitrate reductase, subunit gamma; nitrate reductase subunit gamma complement(90370..91377) Desulfovibrio vulgaris str. 'Miyazaki F' 7171944 YP_002434500.1 CDS DvMF_0071 NC_011769.1 91393 91938 R KEGG: dde:Dde_2270 hypothetical protein; hypothetical protein complement(91393..91938) Desulfovibrio vulgaris str. 'Miyazaki F' 7171945 YP_002434501.1 CDS DvMF_0072 NC_011769.1 92367 93407 R KEGG: dde:Dde_2268 hypothetical protein; hypothetical protein complement(92367..93407) Desulfovibrio vulgaris str. 'Miyazaki F' 7171946 YP_002434502.1 CDS DvMF_0073 NC_011769.1 93530 94480 D PFAM: protein of unknown function DUF45; KEGG: cpb:Cphamn1_1661 protein of unknown function DUF45; hypothetical protein 93530..94480 Desulfovibrio vulgaris str. 'Miyazaki F' 7171947 YP_002434503.1 CDS DvMF_0074 NC_011769.1 94764 96050 R KEGG: dde:Dde_2265 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; sulfate adenylyltransferase complement(94764..96050) Desulfovibrio vulgaris str. 'Miyazaki F' 7171948 YP_002434504.1 CDS rpsL NC_011769.1 97231 97602 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 97231..97602 Desulfovibrio vulgaris str. 'Miyazaki F' 7171949 YP_002434505.1 CDS DvMF_0076 NC_011769.1 97618 98088 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 97618..98088 Desulfovibrio vulgaris str. 'Miyazaki F' 7171950 YP_002434506.1 CDS DvMF_0077 NC_011769.1 98107 100182 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 98107..100182 Desulfovibrio vulgaris str. 'Miyazaki F' 7171951 YP_002434507.1 CDS rpsJ NC_011769.1 100967 101284 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 100967..101284 Desulfovibrio vulgaris str. 'Miyazaki F' 7171952 YP_002434508.1 CDS rplC NC_011769.1 101297 101926 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 101297..101926 Desulfovibrio vulgaris str. 'Miyazaki F' 7171953 YP_002434509.1 CDS rplD NC_011769.1 101945 102565 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 101945..102565 Desulfovibrio vulgaris str. 'Miyazaki F' 7171954 YP_002434510.1 CDS rplW NC_011769.1 102577 102867 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 102577..102867 Desulfovibrio vulgaris str. 'Miyazaki F' 7171955 YP_002434511.1 CDS rplB NC_011769.1 102871 103701 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 102871..103701 Desulfovibrio vulgaris str. 'Miyazaki F' 7171956 YP_002434512.1 CDS rpsS NC_011769.1 103711 103992 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 103711..103992 Desulfovibrio vulgaris str. 'Miyazaki F' 7171957 YP_002434513.1 CDS rplV NC_011769.1 104005 104343 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 104005..104343 Desulfovibrio vulgaris str. 'Miyazaki F' 7171958 YP_002434514.1 CDS rpsC NC_011769.1 104347 104988 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 104347..104988 Desulfovibrio vulgaris str. 'Miyazaki F' 7171959 YP_002434515.1 CDS rplP NC_011769.1 104988 105401 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 104988..105401 Desulfovibrio vulgaris str. 'Miyazaki F' 7171960 YP_002434516.1 CDS DvMF_0087 NC_011769.1 105403 105588 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 105403..105588 Desulfovibrio vulgaris str. 'Miyazaki F' 7171961 YP_002434517.1 CDS rpsQ NC_011769.1 105593 105859 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 105593..105859 Desulfovibrio vulgaris str. 'Miyazaki F' 7171962 YP_002434518.1 CDS rplN NC_011769.1 105869 106237 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 105869..106237 Desulfovibrio vulgaris str. 'Miyazaki F' 7171963 YP_002434519.1 CDS rplX NC_011769.1 106248 106571 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 106248..106571 Desulfovibrio vulgaris str. 'Miyazaki F' 7171964 YP_002434520.1 CDS rplE NC_011769.1 106583 107122 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 106583..107122 Desulfovibrio vulgaris str. 'Miyazaki F' 7171965 YP_002434521.1 CDS rpsN NC_011769.1 107135 107320 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 107135..107320 Desulfovibrio vulgaris str. 'Miyazaki F' 7171966 YP_002434522.1 CDS rpsH NC_011769.1 107339 107719 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 107339..107719 Desulfovibrio vulgaris str. 'Miyazaki F' 7171967 YP_002434523.1 CDS rplF NC_011769.1 107729 108265 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 107729..108265 Desulfovibrio vulgaris str. 'Miyazaki F' 7171968 YP_002434524.1 CDS rplR NC_011769.1 108280 108639 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 108280..108639 Desulfovibrio vulgaris str. 'Miyazaki F' 7171969 YP_002434525.1 CDS rpsE NC_011769.1 108658 109149 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 108658..109149 Desulfovibrio vulgaris str. 'Miyazaki F' 7171970 YP_002434526.1 CDS rpmD NC_011769.1 109159 109329 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 109159..109329 Desulfovibrio vulgaris str. 'Miyazaki F' 7171971 YP_002434527.1 CDS rplO NC_011769.1 109329 109778 D late assembly protein; 50S ribosomal protein L15 109329..109778 Desulfovibrio vulgaris str. 'Miyazaki F' 7171972 YP_002434528.1 CDS secY NC_011769.1 109782 111095 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 109782..111095 Desulfovibrio vulgaris str. 'Miyazaki F' 7171973 YP_002434529.1 CDS DvMF_0100 NC_011769.1 111097 111891 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dde:Dde_2236 methionine aminopeptidase, type I; methionine aminopeptidase 111097..111891 Desulfovibrio vulgaris str. 'Miyazaki F' 7171974 YP_002434530.1 CDS rpmJ NC_011769.1 111977 112090 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 111977..112090 Desulfovibrio vulgaris str. 'Miyazaki F' 7171975 YP_002434531.1 CDS rpsM NC_011769.1 112108 112476 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 112108..112476 Desulfovibrio vulgaris str. 'Miyazaki F' 7171976 YP_002434532.1 CDS DvMF_0103 NC_011769.1 112628 113017 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 112628..113017 Desulfovibrio vulgaris str. 'Miyazaki F' 7171977 YP_002434533.1 CDS rpsD NC_011769.1 113034 113660 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 113034..113660 Desulfovibrio vulgaris str. 'Miyazaki F' 7171978 YP_002434534.1 CDS DvMF_0105 NC_011769.1 113673 114716 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 113673..114716 Desulfovibrio vulgaris str. 'Miyazaki F' 7171979 YP_002434535.1 CDS rplQ NC_011769.1 114706 115107 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 114706..115107 Desulfovibrio vulgaris str. 'Miyazaki F' 7171980 YP_002434536.1 CDS DvMF_0107 NC_011769.1 115303 116355 R Contains selenocysteine; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dde:Dde_2225 selenophosphate synthase; selenide, water dikinase complement(115303..116355) Desulfovibrio vulgaris str. 'Miyazaki F' 7171981 YP_002434537.1 CDS DvMF_0108 NC_011769.1 116352 117314 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dde:Dde_2226 LysR family transcriptional regulator; LysR family transcriptional regulator complement(116352..117314) Desulfovibrio vulgaris str. 'Miyazaki F' 7171982 YP_002434538.1 CDS DvMF_0109 NC_011769.1 117805 119103 D TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: dde:Dde_2222 trigger factor; trigger factor 117805..119103 Desulfovibrio vulgaris str. 'Miyazaki F' 7171984 YP_002434539.1 CDS clpP NC_011769.1 119625 120230 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 119625..120230 Desulfovibrio vulgaris str. 'Miyazaki F' 7171985 YP_002434540.1 CDS clpX NC_011769.1 120238 121776 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 120238..121776 Desulfovibrio vulgaris str. 'Miyazaki F' 7171986 YP_002434541.1 CDS DvMF_0112 NC_011769.1 121895 124357 D KEGG: dde:Dde_2218 Lon-A peptidase; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA central domain protein; ATPase AAA; SMART: AAA ATPase; ATP-dependent protease La 121895..124357 Desulfovibrio vulgaris str. 'Miyazaki F' 7171987 YP_002434542.1 CDS DvMF_0113 NC_011769.1 124755 125330 R KEGG: dde:Dde_2213 hypothetical protein; hypothetical protein complement(124755..125330) Desulfovibrio vulgaris str. 'Miyazaki F' 7171988 YP_002434543.1 CDS DvMF_0114 NC_011769.1 125353 125619 R hypothetical protein complement(125353..125619) Desulfovibrio vulgaris str. 'Miyazaki F' 7171989 YP_002434544.1 CDS DvMF_0115 NC_011769.1 125637 126578 R KEGG: dde:Dde_2212 hypothetical protein; hypothetical protein complement(125637..126578) Desulfovibrio vulgaris str. 'Miyazaki F' 7171990 YP_002434545.1 CDS DvMF_0116 NC_011769.1 126981 127409 R PFAM: ferric-uptake regulator; KEGG: dde:Dde_2211 ferric uptake regulator family protein; Fur family ferric uptake regulator complement(126981..127409) Desulfovibrio vulgaris str. 'Miyazaki F' 7171991 YP_002434546.1 CDS DvMF_0117 NC_011769.1 127653 128483 R PFAM: ABC transporter; KEGG: dde:Dde_2210 cation ABC transporter permease; ABC transporter complement(127653..128483) Desulfovibrio vulgaris str. 'Miyazaki F' 7171992 YP_002434547.1 CDS DvMF_0118 NC_011769.1 128483 129409 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2209 ATPase; ABC transporter complement(128483..129409) Desulfovibrio vulgaris str. 'Miyazaki F' 7171993 YP_002434548.1 CDS DvMF_0119 NC_011769.1 129416 130450 R PFAM: periplasmic solute binding protein; KEGG: dde:Dde_2208 cation ABC transporter periplasmc-binding protein; periplasmic solute binding protein complement(129416..130450) Desulfovibrio vulgaris str. 'Miyazaki F' 7171994 YP_002434549.1 CDS ispG NC_011769.1 130879 131970 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 130879..131970 Desulfovibrio vulgaris str. 'Miyazaki F' 7171995 YP_002434550.1 CDS DvMF_0121 NC_011769.1 131970 133697 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 131970..133697 Desulfovibrio vulgaris str. 'Miyazaki F' 7171996 YP_002434551.1 CDS DvMF_0122 NC_011769.1 133898 135433 D KEGG: dde:Dde_2204 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 133898..135433 Desulfovibrio vulgaris str. 'Miyazaki F' 7171997 YP_002434552.1 CDS DvMF_0123 NC_011769.1 135433 136443 D PFAM: peptidase M23; KEGG: dde:Dde_2203 M24/M37 family peptidase; peptidase M23 135433..136443 Desulfovibrio vulgaris str. 'Miyazaki F' 7171998 YP_002434553.1 CDS DvMF_0124 NC_011769.1 136447 136749 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 136447..136749 Desulfovibrio vulgaris str. 'Miyazaki F' 7171999 YP_002434554.1 CDS DvMF_0125 NC_011769.1 136733 137674 D PFAM: polyprenyl synthetase; KEGG: dde:Dde_2201 farnesyl-diphosphate synthase; polyprenyl synthetase 136733..137674 Desulfovibrio vulgaris str. 'Miyazaki F' 7172000 YP_002434555.1 CDS DvMF_0126 NC_011769.1 137757 139697 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 137757..139697 Desulfovibrio vulgaris str. 'Miyazaki F' 7172001 YP_002434556.1 CDS DvMF_0127 NC_011769.1 139865 142180 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(139865..142180) Desulfovibrio vulgaris str. 'Miyazaki F' 7172002 YP_002434557.1 CDS DvMF_0128 NC_011769.1 142355 142972 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_2198 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein complement(142355..142972) Desulfovibrio vulgaris str. 'Miyazaki F' 7172003 YP_002434558.1 CDS DvMF_0129 NC_011769.1 143165 143557 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dde:Dde_2197 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl-tetrahydropterin synthase complement(143165..143557) Desulfovibrio vulgaris str. 'Miyazaki F' 7172004 YP_002434559.1 CDS DvMF_0130 NC_011769.1 143616 147137 R KEGG: dde:Dde_2196 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III subunit alpha; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(143616..147137) Desulfovibrio vulgaris str. 'Miyazaki F' 7172005 YP_002434560.1 CDS DvMF_0131 NC_011769.1 147498 147839 D KEGG: dde:Dde_2194 hypothetical protein; hypothetical protein 147498..147839 Desulfovibrio vulgaris str. 'Miyazaki F' 7172006 YP_002434561.1 CDS DvMF_0132 NC_011769.1 147842 148711 D SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_2193 HD domain-containing protein; metal-dependent phosphohydrolase 147842..148711 Desulfovibrio vulgaris str. 'Miyazaki F' 7172007 YP_002434562.1 CDS DvMF_0133 NC_011769.1 148839 149576 D PFAM: methyltransferase type 11; KEGG: dde:Dde_2191 hypothetical protein; methyltransferase type 11 148839..149576 Desulfovibrio vulgaris str. 'Miyazaki F' 7172008 YP_002434563.1 CDS DvMF_0134 NC_011769.1 149783 150322 R hypothetical protein complement(149783..150322) Desulfovibrio vulgaris str. 'Miyazaki F' 7172009 YP_002434564.1 CDS DvMF_0135 NC_011769.1 150436 151254 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfu:Sfum_3208 haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase complement(150436..151254) Desulfovibrio vulgaris str. 'Miyazaki F' 7172010 YP_002434565.1 CDS DvMF_0136 NC_011769.1 151254 152498 R KEGG: lip:LI0254 hypothetical protein; hypothetical protein complement(151254..152498) Desulfovibrio vulgaris str. 'Miyazaki F' 7172011 YP_002434566.1 CDS DvMF_0137 NC_011769.1 152746 153816 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: dde:Dde_2187 UDP-galactose 4-epimerase; UDP-glucose 4-epimerase 152746..153816 Desulfovibrio vulgaris str. 'Miyazaki F' 7172012 YP_002434567.1 CDS DvMF_0138 NC_011769.1 154079 155311 R KEGG: dde:Dde_2185 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase complement(154079..155311) Desulfovibrio vulgaris str. 'Miyazaki F' 7172013 YP_002434568.1 CDS DvMF_0139 NC_011769.1 155322 156305 R PFAM: nucleoside recognition domain protein; KEGG: dde:Dde_2184 hypothetical protein; nucleoside recognition domain-containing protein complement(155322..156305) Desulfovibrio vulgaris str. 'Miyazaki F' 7172014 YP_002434569.1 CDS DvMF_0140 NC_011769.1 156372 157253 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_2183 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(156372..157253) Desulfovibrio vulgaris str. 'Miyazaki F' 7172015 YP_002434570.1 CDS DvMF_0141 NC_011769.1 157250 158272 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_2182 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(157250..158272) Desulfovibrio vulgaris str. 'Miyazaki F' 7172016 YP_002434571.1 CDS DvMF_0142 NC_011769.1 158638 159510 D PFAM: anaerobic cobalt chelatase; KEGG: dde:Dde_2181 heme-binding protein; anaerobic cobalt chelatase 158638..159510 Desulfovibrio vulgaris str. 'Miyazaki F' 7172017 YP_002434572.1 CDS DvMF_0143 NC_011769.1 159913 160863 D KEGG: dde:Dde_2178 lipoprotein; lipoprotein 159913..160863 Desulfovibrio vulgaris str. 'Miyazaki F' 7172018 YP_002434573.1 CDS DvMF_0144 NC_011769.1 160936 161139 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dde:Dde_2177 twin arginine-targeting protein translocase; twin-arginine translocation protein, TatA/E family subunit complement(160936..161139) Desulfovibrio vulgaris str. 'Miyazaki F' 7172019 YP_002434574.1 CDS DvMF_0145 NC_011769.1 161265 163133 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: rhodanese; KEGG: dde:Dde_2176 rhodanese-like protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 161265..163133 Desulfovibrio vulgaris str. 'Miyazaki F' 7172020 YP_002434575.1 CDS DvMF_0146 NC_011769.1 163130 163639 D KEGG: dde:Dde_2175 hypothetical protein; hypothetical protein 163130..163639 Desulfovibrio vulgaris str. 'Miyazaki F' 7172021 YP_002434576.1 CDS DvMF_0147 NC_011769.1 163646 164674 D KEGG: dde:Dde_2174 hypothetical protein; hypothetical protein 163646..164674 Desulfovibrio vulgaris str. 'Miyazaki F' 7172022 YP_002434577.1 CDS DvMF_0148 NC_011769.1 164879 165622 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: dde:Dde_2173 HAD family hydrolase; HAD-superfamily hydrolase 164879..165622 Desulfovibrio vulgaris str. 'Miyazaki F' 7172023 YP_002434578.1 CDS DvMF_0149 NC_011769.1 165865 166167 D PFAM: protein of unknown function YGGT; KEGG: lip:LI0363 predicted integral membrane protein; hypothetical protein 165865..166167 Desulfovibrio vulgaris str. 'Miyazaki F' 7172024 YP_002434579.1 CDS DvMF_0150 NC_011769.1 166177 166686 D PFAM: DivIVA family protein; KEGG: dde:Dde_2171 cell-division initiation protein DivIVA; DivIVA family protein 166177..166686 Desulfovibrio vulgaris str. 'Miyazaki F' 7172025 YP_002434580.1 CDS DvMF_0151 NC_011769.1 166673 166993 D PFAM: protein of unknown function DUF167; KEGG: dde:Dde_2170 hypothetical protein; hypothetical protein 166673..166993 Desulfovibrio vulgaris str. 'Miyazaki F' 7172026 YP_002434581.1 CDS DvMF_0152 NC_011769.1 167023 167253 D KEGG: dde:Dde_2169 hypothetical protein; hypothetical protein 167023..167253 Desulfovibrio vulgaris str. 'Miyazaki F' 7172027 YP_002434582.1 CDS DvMF_0153 NC_011769.1 167254 168942 D KEGG: dde:Dde_2168 acetolactate synthase, large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; acetolactate synthase large subunit 167254..168942 Desulfovibrio vulgaris str. 'Miyazaki F' 7172028 YP_002434583.1 CDS ilvH NC_011769.1 168955 169446 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 168955..169446 Desulfovibrio vulgaris str. 'Miyazaki F' 7172029 YP_002434584.1 CDS DvMF_0155 NC_011769.1 169782 170774 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 169782..170774 Desulfovibrio vulgaris str. 'Miyazaki F' 7172030 YP_002434585.1 CDS DvMF_0156 NC_011769.1 171170 171736 D PFAM: NADPH-dependent FMN reductase; KEGG: pfl:PFL_3289 FMN reductase, NADPH-dependent; NADPH-dependent FMN reductase 171170..171736 Desulfovibrio vulgaris str. 'Miyazaki F' 7172031 YP_002434586.1 CDS DvMF_0157 NC_011769.1 172171 172386 R KEGG: dde:Dde_2165 hypothetical protein; hypothetical protein complement(172171..172386) Desulfovibrio vulgaris str. 'Miyazaki F' 7172032 YP_002434587.1 CDS DvMF_0158 NC_011769.1 172600 172920 R KEGG: dde:Dde_2018 HesB-like domain-containing protein; Contains selenocysteine; HesB-like domain-containing protein complement(172600..172920) Desulfovibrio vulgaris str. 'Miyazaki F' 7172033 YP_002434588.1 CDS DvMF_0159 NC_011769.1 173168 173461 R KEGG: dde:Dde_2018 HesB-like domain-containing protein; HesB-like domain-containing protein complement(173168..173461) Desulfovibrio vulgaris str. 'Miyazaki F' 7172034 YP_002434589.1 CDS DvMF_0160 NC_011769.1 173682 174215 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 173682..174215 Desulfovibrio vulgaris str. 'Miyazaki F' 7172035 YP_002434590.1 CDS DvMF_0161 NC_011769.1 174367 176121 R KEGG: lip:LI0306 predicted integral membrane protein; integral membrane protein complement(174367..176121) Desulfovibrio vulgaris str. 'Miyazaki F' 7172036 YP_002434591.1 CDS DvMF_0162 NC_011769.1 176913 178202 D KEGG: gsu:GSU1966 hypothetical protein; hypothetical protein 176913..178202 Desulfovibrio vulgaris str. 'Miyazaki F' 7172037 YP_002434592.1 CDS DvMF_0164 NC_011769.1 178837 179658 R KEGG: mms:mma_3662 hypothetical protein; hypothetical protein complement(178837..179658) Desulfovibrio vulgaris str. 'Miyazaki F' 7172039 YP_002434593.1 CDS DvMF_0165 NC_011769.1 179780 180337 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mta:Moth_0451 4Fe-4S ferredoxin iron-sulfur binding; 4Fe-4S ferredoxin complement(179780..180337) Desulfovibrio vulgaris str. 'Miyazaki F' 7172040 YP_002434594.1 CDS DvMF_0166 NC_011769.1 180349 182484 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mta:Moth_0450 formate dehydrogenase; formate dehydrogenase complement(180349..182484) Desulfovibrio vulgaris str. 'Miyazaki F' 7172041 YP_002434595.1 CDS DvMF_0167 NC_011769.1 182620 184020 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gbm:Gbem_1735 twin-arginine translocation pathway signal; ECF subfamily RNA polymerase sigma-24 subunit complement(182620..184020) Desulfovibrio vulgaris str. 'Miyazaki F' 7172042 YP_002434596.1 CDS DvMF_0168 NC_011769.1 184541 185011 R hypothetical protein complement(184541..185011) Desulfovibrio vulgaris str. 'Miyazaki F' 7172043 YP_002434597.1 CDS DvMF_0169 NC_011769.1 185305 185832 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_1779 tRNA-adenosine deaminase; zinc-binding CMP/dCMP deaminase complement(185305..185832) Desulfovibrio vulgaris str. 'Miyazaki F' 7172045 YP_002434598.1 CDS DvMF_0170 NC_011769.1 186210 186866 R PFAM: conserved hypothetical protein; KEGG: dde:Dde_1780 hypothetical protein; hypothetical protein complement(186210..186866) Desulfovibrio vulgaris str. 'Miyazaki F' 7172046 YP_002434599.1 CDS DvMF_0171 NC_011769.1 187304 188914 D PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1781 metallo-beta-lactamase family protein; beta-lactamase 187304..188914 Desulfovibrio vulgaris str. 'Miyazaki F' 7172047 YP_002434600.1 CDS DvMF_0172 NC_011769.1 189028 189600 D TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase KEGG: dde:Dde_1782 hypothetical protein; methyltransferase 189028..189600 Desulfovibrio vulgaris str. 'Miyazaki F' 7172048 YP_002434601.1 CDS coaD NC_011769.1 189576 190337 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 189576..190337 Desulfovibrio vulgaris str. 'Miyazaki F' 7172049 YP_002434602.1 CDS miaA NC_011769.1 190667 191680 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 190667..191680 Desulfovibrio vulgaris str. 'Miyazaki F' 7172050 YP_002434603.1 CDS DvMF_0175 NC_011769.1 191843 192373 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ppd:Ppro_1978 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 191843..192373 Desulfovibrio vulgaris str. 'Miyazaki F' 7172051 YP_002434604.1 CDS DvMF_0176 NC_011769.1 192376 192900 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: glo:Glov_2970 protein of unknown function DUF395 YeeE/YedE; hypothetical protein 192376..192900 Desulfovibrio vulgaris str. 'Miyazaki F' 7172052 YP_002434605.1 CDS DvMF_0177 NC_011769.1 193386 194675 D PFAM: lytic transglycosylase catalytic; KEGG: dde:Dde_1786 membrane-bound lytic murein transglycosylase C; lytic transglycosylase 193386..194675 Desulfovibrio vulgaris str. 'Miyazaki F' 7172053 YP_002434606.1 CDS DvMF_0178 NC_011769.1 194842 195351 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: dde:Dde_1787 lipoprotein; outer membrane chaperone Skp 194842..195351 Desulfovibrio vulgaris str. 'Miyazaki F' 7172054 YP_002434607.1 CDS DvMF_0179 NC_011769.1 195652 196503 R KEGG: oan:Oant_2848 extracellular solute-binding protein family 3; hypothetical protein complement(195652..196503) Desulfovibrio vulgaris str. 'Miyazaki F' 7172055 YP_002434608.1 CDS DvMF_0180 NC_011769.1 196771 197655 R KEGG: ppw:PputW619_4145 hypothetical protein; hypothetical protein complement(196771..197655) Desulfovibrio vulgaris str. 'Miyazaki F' 7172056 YP_002434609.1 CDS DvMF_0181 NC_011769.1 198695 199423 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dde:Dde_1789 phosphoadenylylsulfate reductase (thioredoxin); phosphoadenosine phosphosulfate reductase 198695..199423 Desulfovibrio vulgaris str. 'Miyazaki F' 7172060 YP_002434610.1 CDS DvMF_0182 NC_011769.1 199674 199892 R KEGG: dde:Dde_1790 hypothetical protein; hypothetical protein complement(199674..199892) Desulfovibrio vulgaris str. 'Miyazaki F' 7172061 YP_002434611.1 CDS DvMF_0183 NC_011769.1 200127 200642 D PFAM: ferritin; KEGG: dde:Dde_1791 ferritin; ferroxidase 200127..200642 Desulfovibrio vulgaris str. 'Miyazaki F' 7172062 YP_002434612.1 CDS DvMF_0184 NC_011769.1 200775 202466 D PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1792 pyruvate ferredoxin oxidoreductase, subunit alpha; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 200775..202466 Desulfovibrio vulgaris str. 'Miyazaki F' 7172063 YP_002434613.1 CDS DvMF_0185 NC_011769.1 202524 203375 D TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_1793 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate; pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta 202524..203375 Desulfovibrio vulgaris str. 'Miyazaki F' 7172064 YP_002434614.1 CDS DvMF_0186 NC_011769.1 203460 203807 D KEGG: dde:Dde_1794 hypothetical protein; hypothetical protein 203460..203807 Desulfovibrio vulgaris str. 'Miyazaki F' 7172065 YP_002434615.1 CDS DvMF_0187 NC_011769.1 203982 204512 R KEGG: dde:Dde_1795 hypothetical protein; hypothetical protein complement(203982..204512) Desulfovibrio vulgaris str. 'Miyazaki F' 7172066 YP_002434616.1 CDS glpX NC_011769.1 204748 205731 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(204748..205731) Desulfovibrio vulgaris str. 'Miyazaki F' 7172067 YP_002434617.1 CDS purU NC_011769.1 206108 206962 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(206108..206962) Desulfovibrio vulgaris str. 'Miyazaki F' 7172068 YP_002434618.1 CDS DvMF_0190 NC_011769.1 207175 207579 R hypothetical protein complement(207175..207579) Desulfovibrio vulgaris str. 'Miyazaki F' 7172069 YP_002434619.1 CDS DvMF_0191 NC_011769.1 207764 208000 R hypothetical protein complement(207764..208000) Desulfovibrio vulgaris str. 'Miyazaki F' 7172070 YP_002434620.1 CDS DvMF_0192 NC_011769.1 208626 211379 D KEGG: mag:amb1260 HrpA-like helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 208626..211379 Desulfovibrio vulgaris str. 'Miyazaki F' 7172071 YP_002434621.1 CDS DvMF_0193 NC_011769.1 211588 212277 D KEGG: shw:Sputw3181_2461 lipoprotein; hypothetical protein 211588..212277 Desulfovibrio vulgaris str. 'Miyazaki F' 7172072 YP_002434622.1 CDS DvMF_0194 NC_011769.1 212761 213405 D PFAM: protein of unknown function DUF161; KEGG: mba:Mbar_A3450 uncharacterized membrane protein; hypothetical protein 212761..213405 Desulfovibrio vulgaris str. 'Miyazaki F' 7172073 YP_002434623.1 CDS DvMF_0195 NC_011769.1 214229 214495 D PFAM: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein 214229..214495 Desulfovibrio vulgaris str. 'Miyazaki F' 7172075 YP_002434624.1 CDS DvMF_0196 NC_011769.1 214593 214811 D TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; KEGG: dde:Dde_3769 translation initiation factor 1; translation initiation factor IF-1 214593..214811 Desulfovibrio vulgaris str. 'Miyazaki F' 7172076 YP_002434625.1 CDS DvMF_0197 NC_011769.1 215142 216617 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0265 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 215142..216617 Desulfovibrio vulgaris str. 'Miyazaki F' 7172077 YP_002434626.1 CDS DvMF_0198 NC_011769.1 217001 217324 R hypothetical protein complement(217001..217324) Desulfovibrio vulgaris str. 'Miyazaki F' 7172078 YP_002434627.1 CDS DvMF_0199 NC_011769.1 217439 217942 R PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: dde:Dde_1669 cob(I)yrinic acid a,c-diamide adenosyltransferase; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP complement(217439..217942) Desulfovibrio vulgaris str. 'Miyazaki F' 7172079 YP_002434628.1 CDS DvMF_0200 NC_011769.1 217942 219102 R PFAM: radical SAM protein; KEGG: dde:Dde_1670 radical SAM domain-containing protein; radical SAM protein complement(217942..219102) Desulfovibrio vulgaris str. 'Miyazaki F' 7172080 YP_002434629.1 CDS DvMF_0201 NC_011769.1 219292 219768 R KEGG: dame:35054.; hypothetical protein complement(219292..219768) Desulfovibrio vulgaris str. 'Miyazaki F' 7172081 YP_002434630.1 CDS DvMF_0202 NC_011769.1 219857 220909 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 219857..220909 Desulfovibrio vulgaris str. 'Miyazaki F' 7172082 YP_002434631.1 CDS DvMF_0203 NC_011769.1 221147 222682 R PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1676 elongator protein 3/MiaB/NifB; radical SAM protein complement(221147..222682) Desulfovibrio vulgaris str. 'Miyazaki F' 7172083 YP_002434632.1 CDS DvMF_0204 NC_011769.1 222839 223672 D KEGG: dde:Dde_1677 hypothetical protein; hypothetical protein 222839..223672 Desulfovibrio vulgaris str. 'Miyazaki F' 7172084 YP_002434633.1 CDS DvMF_0205 NC_011769.1 223712 224239 D KEGG: dde:Dde_1678 hypothetical protein; hypothetical protein 223712..224239 Desulfovibrio vulgaris str. 'Miyazaki F' 7172085 YP_002434634.1 CDS DvMF_0206 NC_011769.1 224325 225326 R KEGG: dde:Dde_1679 hypothetical protein; hypothetical protein complement(224325..225326) Desulfovibrio vulgaris str. 'Miyazaki F' 7172086 YP_002434635.1 CDS DvMF_0207 NC_011769.1 225567 226856 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 225567..226856 Desulfovibrio vulgaris str. 'Miyazaki F' 7172087 YP_002434636.1 CDS DvMF_0208 NC_011769.1 227131 229419 R PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: dsy:DSY1020 hypothetical protein; EAL domain-containing protein complement(227131..229419) Desulfovibrio vulgaris str. 'Miyazaki F' 7172088 YP_002434637.1 CDS DvMF_0209 NC_011769.1 229450 230418 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_1681 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit complement(229450..230418) Desulfovibrio vulgaris str. 'Miyazaki F' 7172089 YP_002434638.1 CDS DvMF_0210 NC_011769.1 230566 232344 D PFAM: extracellular ligand-binding receptor; KEGG: bja:blr6548 leucine/isoleucine/valine-binding protein precursor; extracellular ligand-binding receptor 230566..232344 Desulfovibrio vulgaris str. 'Miyazaki F' 7172090 YP_002434639.1 CDS DvMF_0211 NC_011769.1 232341 235571 D KEGG: mms:mma_2307 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 232341..235571 Desulfovibrio vulgaris str. 'Miyazaki F' 7172091 YP_002434640.1 CDS DvMF_0212 NC_011769.1 235664 239317 D KEGG: dde:Dde_1682 hypothetical protein; hypothetical protein 235664..239317 Desulfovibrio vulgaris str. 'Miyazaki F' 7172092 YP_002434641.1 CDS DvMF_0213 NC_011769.1 239751 241919 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_1684 PAS/PAC sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 239751..241919 Desulfovibrio vulgaris str. 'Miyazaki F' 7172093 YP_002434642.1 CDS DvMF_0215 NC_011769.1 242020 243606 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_1685 two component Fis family transcriptional regulator; Fis family transcriptional regulator 242020..243606 Desulfovibrio vulgaris str. 'Miyazaki F' 7172095 YP_002434643.1 CDS DvMF_0216 NC_011769.1 243624 244205 D KEGG: mxa:MXAN_3234 hypothetical protein; hypothetical protein 243624..244205 Desulfovibrio vulgaris str. 'Miyazaki F' 7172096 YP_002434644.1 CDS DvMF_0217 NC_011769.1 244495 244860 D PFAM: Hpt domain protein; KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; Hpt protein 244495..244860 Desulfovibrio vulgaris str. 'Miyazaki F' 7172097 YP_002434645.1 CDS DvMF_0218 NC_011769.1 244963 245226 R KEGG: dde:Dde_1687 hypothetical protein; hypothetical protein complement(244963..245226) Desulfovibrio vulgaris str. 'Miyazaki F' 7172098 YP_002434646.1 CDS DvMF_0219 NC_011769.1 245544 246170 R PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: aae:aq_486 alkyl hydroperoxide reductase; peroxiredoxin complement(245544..246170) Desulfovibrio vulgaris str. 'Miyazaki F' 7172099 YP_002434647.1 CDS DvMF_0220 NC_011769.1 246533 247135 R KEGG: dde:Dde_1688 hypothetical protein; hypothetical protein complement(246533..247135) Desulfovibrio vulgaris str. 'Miyazaki F' 7172100 YP_002434648.1 CDS DvMF_0221 NC_011769.1 247202 248239 R PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1689 OmpA family protein; OmpA/MotB domain-containing protein complement(247202..248239) Desulfovibrio vulgaris str. 'Miyazaki F' 7172101 YP_002434649.1 CDS DvMF_0222 NC_011769.1 248395 249816 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_1690 dihydrolipoamide dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(248395..249816) Desulfovibrio vulgaris str. 'Miyazaki F' 7172102 YP_002434650.1 CDS DvMF_0223 NC_011769.1 249806 251251 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(249806..251251) Desulfovibrio vulgaris str. 'Miyazaki F' 7172103 YP_002434651.1 CDS DvMF_0224 NC_011769.1 251248 252579 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 complement(251248..252579) Desulfovibrio vulgaris str. 'Miyazaki F' 7172104 YP_002434652.1 CDS DvMF_0225 NC_011769.1 252596 252979 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(252596..252979) Desulfovibrio vulgaris str. 'Miyazaki F' 7172105 YP_002434653.1 CDS DvMF_0226 NC_011769.1 253295 253708 R PFAM: response regulator receiver; KEGG: dde:Dde_1694 response regulator receiver domain-containing protein; response regulator receiver protein complement(253295..253708) Desulfovibrio vulgaris str. 'Miyazaki F' 7172106 YP_002434654.1 CDS DvMF_0227 NC_011769.1 253951 255600 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(253951..255600) Desulfovibrio vulgaris str. 'Miyazaki F' 7172107 YP_002434655.1 CDS DvMF_0228 NC_011769.1 255816 256010 D KEGG: mja:MJ0986 hypothetical protein; hypothetical protein 255816..256010 Desulfovibrio vulgaris str. 'Miyazaki F' 7172108 YP_002434656.1 CDS DvMF_0229 NC_011769.1 256056 257255 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: xcv:XCV1110 site-specific DNA-methyltransferase (cytosine-N(4)-specific); DNA methylase N-4/N-6 domain-containing protein 256056..257255 Desulfovibrio vulgaris str. 'Miyazaki F' 7172109 YP_002434657.1 CDS DvMF_0230 NC_011769.1 257241 258434 R KEGG: cno:NT01CX_1426 hypothetical protein; McrBC 5-methylcytosine restriction system component-like protein complement(257241..258434) Desulfovibrio vulgaris str. 'Miyazaki F' 7172110 YP_002434658.1 CDS DvMF_0231 NC_011769.1 258427 259959 R PFAM: ATPase associated with various cellular activities AAA_5; KEGG: cpf:CPF_0992 McrB domain protein; ATPase complement(258427..259959) Desulfovibrio vulgaris str. 'Miyazaki F' 7172111 YP_002434659.1 CDS DvMF_0234 NC_011769.1 260828 261928 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(260828..261928) Desulfovibrio vulgaris str. 'Miyazaki F' 7172114 YP_002434660.1 CDS DvMF_0235 NC_011769.1 262238 262888 R PFAM: lysine exporter (LYSE/YGGA); KEGG: pst:PSPTO_3452 amino acid transporter LysE; lysine exporter protein LysE/YggA complement(262238..262888) Desulfovibrio vulgaris str. 'Miyazaki F' 7172115 YP_002434661.1 CDS DvMF_0236 NC_011769.1 263108 265921 R PFAM: peptidase M16 domain protein; KEGG: dde:Dde_1699 M16 family peptidase; peptidase M16 domain-containing protein complement(263108..265921) Desulfovibrio vulgaris str. 'Miyazaki F' 7172116 YP_002434662.1 CDS DvMF_0237 NC_011769.1 266347 268356 D PFAM: sulfate transporter/antisigma-factor antagonist STAS; Hpt domain protein; KEGG: dde:Dde_1700 chemotaxis protein CheA; chemotaxis protein CheA 266347..268356 Desulfovibrio vulgaris str. 'Miyazaki F' 7172117 YP_002434663.1 CDS DvMF_0238 NC_011769.1 268699 268971 R KEGG: dol:Dole_0216 hypothetical protein; hypothetical protein complement(268699..268971) Desulfovibrio vulgaris str. 'Miyazaki F' 7172118 YP_002434664.1 CDS DvMF_0239 NC_011769.1 269193 271886 R PFAM: radical SAM protein; beta tubulin, autoregulation binding site; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1701 elongator protein 3/MiaB/NifB; beta tubulin, autoregulation binding site complement(269193..271886) Desulfovibrio vulgaris str. 'Miyazaki F' 7172119 YP_002434665.1 CDS DvMF_0240 NC_011769.1 272132 272500 R KEGG: dde:Dde_1702 hypothetical protein; hypothetical protein complement(272132..272500) Desulfovibrio vulgaris str. 'Miyazaki F' 7172120 YP_002434666.1 CDS DvMF_0241 NC_011769.1 272588 273805 R PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1703 hypothetical protein; major facilitator superfamily protein complement(272588..273805) Desulfovibrio vulgaris str. 'Miyazaki F' 7172121 YP_002434667.1 CDS DvMF_0242 NC_011769.1 273888 274952 R PFAM: DRTGG domain protein; KEGG: dde:Dde_1705 cobyrinic acid a,c-diamide synthase family protein; DRTGG domain-containing protein complement(273888..274952) Desulfovibrio vulgaris str. 'Miyazaki F' 7172122 YP_002434668.1 CDS rnc NC_011769.1 275595 276287 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 275595..276287 Desulfovibrio vulgaris str. 'Miyazaki F' 7172123 YP_002434669.1 CDS DvMF_0244 NC_011769.1 276388 277284 R PFAM: flagellin domain protein; KEGG: dde:Dde_1709 flagellin; flagellin domain-containing protein complement(276388..277284) Desulfovibrio vulgaris str. 'Miyazaki F' 7172124 YP_002434670.1 CDS DvMF_0245 NC_011769.1 277587 277982 D KEGG: dde:Dde_1710 hypothetical protein; hypothetical protein 277587..277982 Desulfovibrio vulgaris str. 'Miyazaki F' 7172125 YP_002434671.1 CDS DvMF_0246 NC_011769.1 278706 280343 R PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: dde:Dde_1711 flagellar hook protein FlgE; hypothetical protein complement(278706..280343) Desulfovibrio vulgaris str. 'Miyazaki F' 7172126 YP_002434672.1 CDS DvMF_0247 NC_011769.1 280410 281201 R PFAM: flagellar hook capping protein; KEGG: dde:Dde_1712 basal-body rod modification protein FlgD; flagellar hook capping protein complement(280410..281201) Desulfovibrio vulgaris str. 'Miyazaki F' 7172127 YP_002434673.1 CDS DvMF_0248 NC_011769.1 281211 283106 R PFAM: flagellar hook-length control protein; KEGG: dde:Dde_1713 hypothetical protein; flagellar hook-length control protein complement(281211..283106) Desulfovibrio vulgaris str. 'Miyazaki F' 7172128 YP_002434674.1 CDS DvMF_0249 NC_011769.1 283640 285205 R PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1714 heptosyltransferase family protein; glycosyl transferase family protein complement(283640..285205) Desulfovibrio vulgaris str. 'Miyazaki F' 7172129 YP_002434675.1 CDS DvMF_0250 NC_011769.1 285258 287207 R KEGG: dde:Dde_1715 CgeB family protein; CgeB family protein complement(285258..287207) Desulfovibrio vulgaris str. 'Miyazaki F' 7172130 YP_002434676.1 CDS DvMF_0251 NC_011769.1 287292 288437 R PFAM: protein of unknown function DUF342; KEGG: dde:Dde_1718 hypothetical protein; hypothetical protein complement(287292..288437) Desulfovibrio vulgaris str. 'Miyazaki F' 7172131 YP_002434677.1 CDS DvMF_0252 NC_011769.1 288559 288903 R TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA; anti-sigma-factor antagonist complement(288559..288903) Desulfovibrio vulgaris str. 'Miyazaki F' 7172132 YP_002434678.1 CDS DvMF_0253 NC_011769.1 288852 289313 R KEGG: dde:Dde_1722 anti-sigma regulatory factor (serine/threonine protein kinase); signal transduction histidine kinase complement(288852..289313) Desulfovibrio vulgaris str. 'Miyazaki F' 7172133 YP_002434679.1 CDS DvMF_0254 NC_011769.1 289325 290917 R PFAM: response regulator receiver; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: dde:Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase; response regulator receiver modulated serine phosphatase complement(289325..290917) Desulfovibrio vulgaris str. 'Miyazaki F' 7172134 YP_002434680.1 CDS DvMF_0255 NC_011769.1 290904 291458 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(290904..291458) Desulfovibrio vulgaris str. 'Miyazaki F' 7172135 YP_002434681.1 CDS DvMF_0256 NC_011769.1 291552 293303 R PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase complement(291552..293303) Desulfovibrio vulgaris str. 'Miyazaki F' 7172136 YP_002434682.1 CDS DvMF_0257 NC_011769.1 293621 294940 R TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: dde:Dde_1726 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(293621..294940) Desulfovibrio vulgaris str. 'Miyazaki F' 7172137 YP_002434683.1 CDS DvMF_0258 NC_011769.1 295595 296344 R PFAM: protein of unknown function DUF164; KEGG: dde:Dde_1728 hypothetical protein; hypothetical protein complement(295595..296344) Desulfovibrio vulgaris str. 'Miyazaki F' 7172139 YP_002434684.1 CDS DvMF_0259 NC_011769.1 296363 297397 R PFAM: protein of unknown function DUF34; KEGG: dde:Dde_1729 hypothetical protein; hypothetical protein complement(296363..297397) Desulfovibrio vulgaris str. 'Miyazaki F' 7172140 YP_002434685.1 CDS DvMF_0260 NC_011769.1 297784 298740 R PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2151 thioredoxin reductase; thioredoxin-disulfide reductase complement(297784..298740) Desulfovibrio vulgaris str. 'Miyazaki F' 7172142 YP_002434686.1 CDS DvMF_0261 NC_011769.1 299020 299766 R KEGG: dde:Dde_2148 chemotaxis protein CheZ; chemotaxis protein CheZ complement(299020..299766) Desulfovibrio vulgaris str. 'Miyazaki F' 7172143 YP_002434687.1 CDS DvMF_0262 NC_011769.1 300268 300711 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2146 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(300268..300711) Desulfovibrio vulgaris str. 'Miyazaki F' 7172144 YP_002434688.1 CDS DvMF_0263 NC_011769.1 300745 301746 R TIGRFAM: tol-pal system protein YbgF; PFAM: hypothetical protein; KEGG: lip:LI1053 hypothetical protein; tol-pal system protein YbgF complement(300745..301746) Desulfovibrio vulgaris str. 'Miyazaki F' 7172145 YP_002434689.1 CDS DvMF_0264 NC_011769.1 301845 302039 R KEGG: sfu:Sfum_0159 hypothetical protein; hypothetical protein complement(301845..302039) Desulfovibrio vulgaris str. 'Miyazaki F' 7172146 YP_002434690.1 CDS lspA NC_011769.1 302068 302568 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(302068..302568) Desulfovibrio vulgaris str. 'Miyazaki F' 7172147 YP_002434691.1 CDS ileS NC_011769.1 302686 305502 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(302686..305502) Desulfovibrio vulgaris str. 'Miyazaki F' 7172148 YP_002434692.1 CDS DvMF_0267 NC_011769.1 305868 306515 R PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_2141 GDSL family lipase; G-D-S-L family lipolytic protein complement(305868..306515) Desulfovibrio vulgaris str. 'Miyazaki F' 7172149 YP_002434693.1 CDS DvMF_0268 NC_011769.1 306663 306914 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dde:Dde_2140 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF complement(306663..306914) Desulfovibrio vulgaris str. 'Miyazaki F' 7172150 YP_002434694.1 CDS DvMF_0269 NC_011769.1 306977 307483 R TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2139 hydrogenase expression/formation protein; hydrogenase expression/formation protein complement(306977..307483) Desulfovibrio vulgaris str. 'Miyazaki F' 7172151 YP_002434695.1 CDS DvMF_0270 NC_011769.1 307818 309521 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2138 periplasmic (NiFe) hydrogenase, large subunit, isozyme 1; nickel-dependent hydrogenase large subunit complement(307818..309521) Desulfovibrio vulgaris str. 'Miyazaki F' 7172152 YP_002434696.1 CDS DvMF_0271 NC_011769.1 309580 310533 R KEGG: dde:Dde_2137 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA complement(309580..310533) Desulfovibrio vulgaris str. 'Miyazaki F' 7172153 YP_002434697.1 CDS DvMF_0272 NC_011769.1 311118 311597 R TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dde:Dde_2136 peptidase M52, hydrogen uptake protein; hydrogenase maturation protease complement(311118..311597) Desulfovibrio vulgaris str. 'Miyazaki F' 7172154 YP_002434698.1 CDS DvMF_0273 NC_011769.1 311959 313425 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing; nickel-dependent hydrogenase large subunit complement(311959..313425) Desulfovibrio vulgaris str. 'Miyazaki F' 7172155 YP_002434699.1 CDS DvMF_0274 NC_011769.1 313455 314408 R KEGG: dde:Dde_2134 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA complement(313455..314408) Desulfovibrio vulgaris str. 'Miyazaki F' 7172156 YP_002434700.1 CDS DvMF_0275 NC_011769.1 314929 316551 R TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: dde:Dde_2049 alpha-isopropylmalate/homocitrate synthase family transferase; alpha-isopropylmalate/homocitrate synthase family transferase complement(314929..316551) Desulfovibrio vulgaris str. 'Miyazaki F' 7172157 YP_002434701.1 CDS DvMF_0276 NC_011769.1 316561 317790 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(316561..317790) Desulfovibrio vulgaris str. 'Miyazaki F' 7172158 YP_002434702.1 CDS DvMF_0277 NC_011769.1 317861 318538 R PFAM: protein of unknown function UPF0079; KEGG: dde:Dde_2047 hypothetical protein; hypothetical protein complement(317861..318538) Desulfovibrio vulgaris str. 'Miyazaki F' 7172159 YP_002434703.1 CDS DvMF_0278 NC_011769.1 318550 319002 R PFAM: CBS domain containing protein; KEGG: dde:Dde_2046 CBS; hypothetical protein complement(318550..319002) Desulfovibrio vulgaris str. 'Miyazaki F' 7172160 YP_002434704.1 CDS DvMF_0279 NC_011769.1 318993 320738 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: dde:Dde_2045 hypothetical protein; carbohydrate kinase complement(318993..320738) Desulfovibrio vulgaris str. 'Miyazaki F' 7172161 YP_002434705.1 CDS acpS NC_011769.1 320848 321219 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(320848..321219) Desulfovibrio vulgaris str. 'Miyazaki F' 7172162 YP_002434706.1 CDS DvMF_0281 NC_011769.1 321367 322092 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(321367..322092) Desulfovibrio vulgaris str. 'Miyazaki F' 7172163 YP_002434707.1 CDS DvMF_0282 NC_011769.1 322443 323780 D KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 322443..323780 Desulfovibrio vulgaris str. 'Miyazaki F' 7172164 YP_002434708.1 CDS DvMF_0283 NC_011769.1 324003 324227 R KEGG: dde:Dde_2041 hypothetical protein; hypothetical protein complement(324003..324227) Desulfovibrio vulgaris str. 'Miyazaki F' 7172165 YP_002434709.1 CDS DvMF_0284 NC_011769.1 324684 325160 D PFAM: CheW domain protein; KEGG: dde:Dde_2040 CheW protein; chemotaxis protein CheW 324684..325160 Desulfovibrio vulgaris str. 'Miyazaki F' 7172166 YP_002434710.1 CDS DvMF_0285 NC_011769.1 325508 329101 D KEGG: dde:Dde_2039 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase; SMART: DEAD-like helicases; transcription-repair coupling factor 325508..329101 Desulfovibrio vulgaris str. 'Miyazaki F' 7172167 YP_002434711.1 CDS DvMF_0286 NC_011769.1 329212 330459 D KEGG: dde:Dde_2038 hypothetical protein; hypothetical protein 329212..330459 Desulfovibrio vulgaris str. 'Miyazaki F' 7172168 YP_002434712.1 CDS DvMF_0287 NC_011769.1 330865 331827 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: lip:LI0303 parvulin-like peptidyl-prolyl isomerase; SurA domain-containing protein 330865..331827 Desulfovibrio vulgaris str. 'Miyazaki F' 7172169 YP_002434713.1 CDS DvMF_0288 NC_011769.1 331906 332943 D SMART: helix-turn-helix domain protein; KEGG: dde:Dde_2036 XRE family transcriptional regulator; XRE family transcriptional regulator 331906..332943 Desulfovibrio vulgaris str. 'Miyazaki F' 7172170 YP_002434714.1 CDS DvMF_0289 NC_011769.1 333017 334537 D PFAM: recombination protein O RecO; KEGG: dde:Dde_2035 DNA repair protein RecO; recombination protein O RecO 333017..334537 Desulfovibrio vulgaris str. 'Miyazaki F' 7172171 YP_002434715.1 CDS glyQ NC_011769.1 334663 335538 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 334663..335538 Desulfovibrio vulgaris str. 'Miyazaki F' 7172172 YP_002434716.1 CDS DvMF_0291 NC_011769.1 335566 337671 D KEGG: dde:Dde_2033 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase subunit beta; glycyl-tRNA synthetase subunit beta 335566..337671 Desulfovibrio vulgaris str. 'Miyazaki F' 7172173 YP_002434717.1 CDS rpsT NC_011769.1 337886 338149 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 337886..338149 Desulfovibrio vulgaris str. 'Miyazaki F' 7172174 YP_002434718.1 CDS DvMF_0293 NC_011769.1 338355 339026 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(338355..339026) Desulfovibrio vulgaris str. 'Miyazaki F' 7172175 YP_002434719.1 CDS DvMF_0294 NC_011769.1 339344 340645 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dde:Dde_2027 ketose-bisphosphate aldolase, class-II; tRNA(Ile)-lysidine synthetase complement(339344..340645) Desulfovibrio vulgaris str. 'Miyazaki F' 7172176 YP_002434720.1 CDS DvMF_0295 NC_011769.1 340782 341117 R KEGG: dde:Dde_2026 hypothetical protein; hypothetical protein complement(340782..341117) Desulfovibrio vulgaris str. 'Miyazaki F' 7172177 YP_002434721.1 CDS hemA NC_011769.1 341126 342454 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(341126..342454) Desulfovibrio vulgaris str. 'Miyazaki F' 7172178 YP_002434722.1 CDS DvMF_0297 NC_011769.1 342557 343384 R PFAM: cytochrome C assembly protein; KEGG: dde:Dde_2024 cytochrome C assembly protein; cytochrome C assembly protein complement(342557..343384) Desulfovibrio vulgaris str. 'Miyazaki F' 7172179 YP_002434723.1 CDS DvMF_0298 NC_011769.1 343371 344057 R TIGRFAM: siroheme synthase; KEGG: dde:Dde_2023 precorrin-2 dehydrogenase; siroheme synthase complement(343371..344057) Desulfovibrio vulgaris str. 'Miyazaki F' 7172180 YP_002434724.1 CDS DvMF_0299 NC_011769.1 344389 345780 D PFAM: glycosyl transferase family 9; KEGG: dde:Dde_2022 heptosyltransferase family protein; glycosyl transferase family protein 344389..345780 Desulfovibrio vulgaris str. 'Miyazaki F' 7172181 YP_002434725.1 CDS DvMF_0300 NC_011769.1 345898 347244 D KEGG: dde:Dde_2021 CgeB family protein; CgeB family protein 345898..347244 Desulfovibrio vulgaris str. 'Miyazaki F' 7172182 YP_002434726.1 CDS DvMF_0301 NC_011769.1 347389 348255 D PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein; family 3 extracellular solute-binding protein 347389..348255 Desulfovibrio vulgaris str. 'Miyazaki F' 7172183 YP_002434727.1 CDS DvMF_0302 NC_011769.1 348371 348577 D PFAM: domain of unknown function DUF1737; KEGG: mes:Meso_3267 hypothetical protein; hypothetical protein 348371..348577 Desulfovibrio vulgaris str. 'Miyazaki F' 7172184 YP_002434728.1 CDS DvMF_0303 NC_011769.1 348603 350378 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(348603..350378) Desulfovibrio vulgaris str. 'Miyazaki F' 7172185 YP_002434729.1 CDS DvMF_0304 NC_011769.1 350452 350910 R PFAM: Cache type 2 domain protein; KEGG: lch:Lcho_2364 cache type 2 domain protein; cache sensor protein complement(350452..350910) Desulfovibrio vulgaris str. 'Miyazaki F' 7172186 YP_002434730.1 CDS DvMF_0305 NC_011769.1 351178 352026 R KEGG: dde:Dde_3211 split soret cytochrome C precursor; split soret cytochrome C precursor complement(351178..352026) Desulfovibrio vulgaris str. 'Miyazaki F' 7172187 YP_002434731.1 CDS DvMF_0306 NC_011769.1 352491 353453 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(352491..353453) Desulfovibrio vulgaris str. 'Miyazaki F' 7172188 YP_002434732.1 CDS hslU NC_011769.1 353685 355136 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(353685..355136) Desulfovibrio vulgaris str. 'Miyazaki F' 7172189 YP_002434733.1 CDS DvMF_0308 NC_011769.1 355405 356850 R KEGG: dde:Dde_2013 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(355405..356850) Desulfovibrio vulgaris str. 'Miyazaki F' 7172190 YP_002434734.1 CDS rpsA NC_011769.1 357123 358817 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(357123..358817) Desulfovibrio vulgaris str. 'Miyazaki F' 7172191 YP_002434735.1 CDS DvMF_0310 NC_011769.1 358970 359254 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dde:Dde_2010 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 358970..359254 Desulfovibrio vulgaris str. 'Miyazaki F' 7172192 YP_002434736.1 CDS DvMF_0311 NC_011769.1 359623 360051 D PFAM: heat shock protein Hsp20; KEGG: dde:Dde_2008 HSP20 family protein; heat shock protein Hsp20 359623..360051 Desulfovibrio vulgaris str. 'Miyazaki F' 7172193 YP_002434737.1 CDS DvMF_0312 NC_011769.1 360067 362688 D PFAM: peptidase S16; KEGG: dde:Dde_2007 ATP-dependent protease; peptidase S16 360067..362688 Desulfovibrio vulgaris str. 'Miyazaki F' 7172194 YP_002434738.1 CDS DvMF_0313 NC_011769.1 363151 363390 D KEGG: dde:Dde_2006 hypothetical protein; hypothetical protein 363151..363390 Desulfovibrio vulgaris str. 'Miyazaki F' 7172195 YP_002434739.1 CDS DvMF_0314 NC_011769.1 363941 364399 D PFAM: protein of unknown function DUF485; KEGG: afw:Anae109_3835 protein of unknown function DUF485; hypothetical protein 363941..364399 Desulfovibrio vulgaris str. 'Miyazaki F' 7172196 YP_002434740.1 CDS DvMF_0315 NC_011769.1 364392 365951 D TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: afw:Anae109_3836 SSS sodium solute transporter superfamily; SSS sodium solute transporter superfamily protein 364392..365951 Desulfovibrio vulgaris str. 'Miyazaki F' 7172197 YP_002434741.1 CDS DvMF_0316 NC_011769.1 365954 367684 D PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase KEGG: aae:aq_2107 hypothetical protein; signal transduction protein with CBS domains 365954..367684 Desulfovibrio vulgaris str. 'Miyazaki F' 7172198 YP_002434742.1 CDS DvMF_0317 NC_011769.1 367705 369897 D PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase KEGG: cau:Caur_2724 protein of unknown function DUF294 nucleotidyltransferase; signal transduction protein with CBS domains 367705..369897 Desulfovibrio vulgaris str. 'Miyazaki F' 7172199 YP_002434743.1 CDS DvMF_0318 NC_011769.1 369894 370697 D PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: afw:Anae109_4029 exonuclease RNase T and DNA polymerase III; exonuclease RNase T and DNA polymerase III 369894..370697 Desulfovibrio vulgaris str. 'Miyazaki F' 7172200 YP_002434744.1 CDS DvMF_0319 NC_011769.1 370907 371416 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1075 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(370907..371416) Desulfovibrio vulgaris str. 'Miyazaki F' 7172201 YP_002434745.1 CDS DvMF_0320 NC_011769.1 371427 373529 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dde:Dde_1076 thiosulfate reductase; formate dehydrogenase complement(371427..373529) Desulfovibrio vulgaris str. 'Miyazaki F' 7172202 YP_002434746.1 CDS DvMF_0321 NC_011769.1 374055 375236 D PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3523 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 374055..375236 Desulfovibrio vulgaris str. 'Miyazaki F' 7172203 YP_002434747.1 CDS DvMF_0322 NC_011769.1 375516 376076 D KEGG: dde:Dde_1207 heterodisulfide reductase, C subunit; heterodisulfide reductase subunit C 375516..376076 Desulfovibrio vulgaris str. 'Miyazaki F' 7172204 YP_002434748.1 CDS DvMF_0323 NC_011769.1 376073 377053 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1208 succinate dehydrogenase subunit C; CoB--CoM heterodisulfide reductase 376073..377053 Desulfovibrio vulgaris str. 'Miyazaki F' 7172205 YP_002434749.1 CDS DvMF_0324 NC_011769.1 377050 379008 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3526 heterodisulfide reductase, subunit alpha; 4Fe-4S ferredoxin 377050..379008 Desulfovibrio vulgaris str. 'Miyazaki F' 7172206 YP_002434750.1 CDS DvMF_0325 NC_011769.1 378996 380501 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase subunit delta; KEGG: dde:Dde_3528 hydrogenase, iron-sulfur cluster-binding subunit; methyl-viologen-reducing hydrogenase subunit delta 378996..380501 Desulfovibrio vulgaris str. 'Miyazaki F' 7172207 YP_002434751.1 CDS DvMF_0326 NC_011769.1 380501 381592 D KEGG: dde:Dde_1212 hydrogenase; hydrogenase 380501..381592 Desulfovibrio vulgaris str. 'Miyazaki F' 7172208 YP_002434752.1 CDS DvMF_0327 NC_011769.1 381585 382472 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1213 hydrogenase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 381585..382472 Desulfovibrio vulgaris str. 'Miyazaki F' 7172209 YP_002434753.1 CDS DvMF_0328 NC_011769.1 382768 383256 D KEGG: dde:Dde_1214 hypothetical protein; hypothetical protein 382768..383256 Desulfovibrio vulgaris str. 'Miyazaki F' 7172210 YP_002434754.1 CDS DvMF_0329 NC_011769.1 383521 384408 D KEGG: dde:Dde_3531 hypothetical protein; hypothetical protein 383521..384408 Desulfovibrio vulgaris str. 'Miyazaki F' 7172211 YP_002434755.1 CDS DvMF_0330 NC_011769.1 384682 385824 D PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3534 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 384682..385824 Desulfovibrio vulgaris str. 'Miyazaki F' 7172212 YP_002434756.1 CDS DvMF_0331 NC_011769.1 385826 387151 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_3535 histidine kinase; PAS/PAC sensor signal transduction histidine kinase 385826..387151 Desulfovibrio vulgaris str. 'Miyazaki F' 7172213 YP_002434757.1 CDS DvMF_0332 NC_011769.1 387157 388566 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3536 two component Fis family transcriptional regulator; Fis family transcriptional regulator 387157..388566 Desulfovibrio vulgaris str. 'Miyazaki F' 7172214 YP_002434758.1 CDS DvMF_0333 NC_011769.1 388796 389899 D PFAM: ADP-ribosylation/crystallin J1; KEGG: tcx:Tcr_1009 ADP-ribosylation/crystallin J1; ADP-ribosylation/crystallin J1 388796..389899 Desulfovibrio vulgaris str. 'Miyazaki F' 7172215 YP_002434759.1 CDS DvMF_0334 NC_011769.1 390542 391663 D PFAM: glutamyl-tRNA synthetase class Ic; KEGG: sth:STH2668 glutamyl-tRNA synthetase; glutamate--tRNA ligase 390542..391663 Desulfovibrio vulgaris str. 'Miyazaki F' 7172217 YP_002434760.1 CDS DvMF_0335 NC_011769.1 392003 392395 D KEGG: dde:Dde_2003 hypothetical protein; hypothetical protein 392003..392395 Desulfovibrio vulgaris str. 'Miyazaki F' 7172218 YP_002434761.1 CDS DvMF_0336 NC_011769.1 392561 393136 R PFAM: regulatory protein TetR; KEGG: dde:Dde_2002 TetR family transcriptional regulator; TetR family transcriptional regulator complement(392561..393136) Desulfovibrio vulgaris str. 'Miyazaki F' 7172219 YP_002434762.1 CDS DvMF_0337 NC_011769.1 393970 394812 R PFAM: phospholipid/glycerol acyltransferase; KEGG: dde:Dde_2001 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(393970..394812) Desulfovibrio vulgaris str. 'Miyazaki F' 7172220 YP_002434763.1 CDS DvMF_0338 NC_011769.1 394992 395663 R KEGG: dde:Dde_1999 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(394992..395663) Desulfovibrio vulgaris str. 'Miyazaki F' 7172221 YP_002434764.1 CDS DvMF_0339 NC_011769.1 395783 397009 R PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: dde:Dde_1998 recombination factor protein RarA; recombination factor protein RarA complement(395783..397009) Desulfovibrio vulgaris str. 'Miyazaki F' 7172222 YP_002434765.1 CDS DvMF_0340 NC_011769.1 397375 398094 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(397375..398094) Desulfovibrio vulgaris str. 'Miyazaki F' 7172223 YP_002434766.1 CDS DvMF_0341 NC_011769.1 398287 399375 R TIGRFAM: glycine cleavage system protein T; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: dde:Dde_1996 glycine cleavage system protein T; glycine cleavage system protein T complement(398287..399375) Desulfovibrio vulgaris str. 'Miyazaki F' 7172224 YP_002434767.1 CDS DvMF_0342 NC_011769.1 399735 401453 R KEGG: dde:Dde_1995 hypothetical protein; hypothetical protein complement(399735..401453) Desulfovibrio vulgaris str. 'Miyazaki F' 7172225 YP_002434768.1 CDS DvMF_0343 NC_011769.1 402023 403123 D PFAM: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein; GAF sensor protein 402023..403123 Desulfovibrio vulgaris str. 'Miyazaki F' 7172226 YP_002434769.1 CDS DvMF_0344 NC_011769.1 403148 404170 D TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: dde:Dde_1993 rod shape-determining protein MreB; rod shape-determining protein MreB 403148..404170 Desulfovibrio vulgaris str. 'Miyazaki F' 7172227 YP_002434770.1 CDS DvMF_0345 NC_011769.1 404295 405161 D PFAM: inositol monophosphatase; KEGG: dde:Dde_1992 inositol-1-monophosphatase; inositol-phosphate phosphatase 404295..405161 Desulfovibrio vulgaris str. 'Miyazaki F' 7172228 YP_002434771.1 CDS DvMF_0346 NC_011769.1 405236 405784 R PFAM: NUDIX hydrolase; KEGG: dde:Dde_1991 isopentenyl-diphosphate delta-isomerase; NUDIX hydrolase complement(405236..405784) Desulfovibrio vulgaris str. 'Miyazaki F' 7172229 YP_002434772.1 CDS DvMF_0347 NC_011769.1 405948 406526 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_1990 30S ribosomal protein S18P alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 405948..406526 Desulfovibrio vulgaris str. 'Miyazaki F' 7172230 YP_002434773.1 CDS DvMF_0348 NC_011769.1 406726 407481 D PFAM: triosephosphate isomerase; KEGG: dde:Dde_1989 triosephosphate isomerase; triose-phosphate isomerase 406726..407481 Desulfovibrio vulgaris str. 'Miyazaki F' 7172231 YP_002434774.1 CDS secG NC_011769.1 407520 407864 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: lip:LI1131 preprotein translocase subunit SecG; preprotein translocase subunit SecG 407520..407864 Desulfovibrio vulgaris str. 'Miyazaki F' 7172232 YP_002434775.1 CDS DvMF_0350 NC_011769.1 408188 409153 R PFAM: extracellular solute-binding protein family 3; KEGG: vvy:VV1499 hypothetical protein; family 3 extracellular solute-binding protein complement(408188..409153) Desulfovibrio vulgaris str. 'Miyazaki F' 7172234 YP_002434776.1 CDS DvMF_0351 NC_011769.1 409460 409624 R KEGG: dde:Dde_1981 hypothetical protein; hypothetical protein complement(409460..409624) Desulfovibrio vulgaris str. 'Miyazaki F' 7172235 YP_002434777.1 CDS DvMF_0352 NC_011769.1 409755 410540 R PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dde:Dde_1980 transcriptional regulator; phage repressor complement(409755..410540) Desulfovibrio vulgaris str. 'Miyazaki F' 7172236 YP_002434778.1 CDS DvMF_0353 NC_011769.1 410826 412076 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dde:Dde_1978 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(410826..412076) Desulfovibrio vulgaris str. 'Miyazaki F' 7172237 YP_002434779.1 CDS DvMF_0354 NC_011769.1 412173 412694 R KEGG: dde:Dde_1977 lipoprotein; hypothetical protein complement(412173..412694) Desulfovibrio vulgaris str. 'Miyazaki F' 7172238 YP_002434780.1 CDS DvMF_0355 NC_011769.1 412711 415443 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(412711..415443) Desulfovibrio vulgaris str. 'Miyazaki F' 7172239 YP_002434781.1 CDS DvMF_0356 NC_011769.1 415905 417113 R PFAM: hypothetical protein; KEGG: dde:Dde_1975 hypothetical protein; hypothetical protein complement(415905..417113) Desulfovibrio vulgaris str. 'Miyazaki F' 7172240 YP_002434782.1 CDS DvMF_0357 NC_011769.1 417126 418022 R PFAM: histidine triad (HIT) protein; KEGG: dde:Dde_1973 HIT family protein; histidine triad (HIT) protein complement(417126..418022) Desulfovibrio vulgaris str. 'Miyazaki F' 7172241 YP_002434783.1 CDS DvMF_0358 NC_011769.1 418298 421531 R PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: dde:Dde_1972 CBS; hypothetical protein complement(418298..421531) Desulfovibrio vulgaris str. 'Miyazaki F' 7172242 YP_002434784.1 CDS DvMF_0359 NC_011769.1 421576 422448 R TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase; KEGG: dde:Dde_1971 tyrosine recombinase XerD subunit; tyrosine recombinase XerD complement(421576..422448) Desulfovibrio vulgaris str. 'Miyazaki F' 7172243 YP_002434785.1 CDS DvMF_0360 NC_011769.1 423036 424775 R PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(423036..424775) Desulfovibrio vulgaris str. 'Miyazaki F' 7172244 YP_002434786.1 CDS DvMF_0361 NC_011769.1 425474 426643 D catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis; LL-diaminopimelate aminotransferase 425474..426643 Desulfovibrio vulgaris str. 'Miyazaki F' 7172245 YP_002434787.1 CDS DvMF_0362 NC_011769.1 426724 427200 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: lip:LI0240 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 426724..427200 Desulfovibrio vulgaris str. 'Miyazaki F' 7172246 YP_002434788.1 CDS DvMF_0363 NC_011769.1 427270 427566 D SMART: TRASH domain protein; KEGG: dde:Dde_1968 TRASH; TRASH domain-containing protein 427270..427566 Desulfovibrio vulgaris str. 'Miyazaki F' 7172247 YP_002434789.1 CDS DvMF_0364 NC_011769.1 427759 428412 D similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 427759..428412 Desulfovibrio vulgaris str. 'Miyazaki F' 7172248 YP_002434790.1 CDS DvMF_0365 NC_011769.1 429540 430415 R PFAM: lipid A biosynthesis acyltransferase; KEGG: lip:LI0871 acyltransferase, HtrB/MsbB family; lipid A biosynthesis acyltransferase complement(429540..430415) Desulfovibrio vulgaris str. 'Miyazaki F' 7172249 YP_002434791.1 CDS DvMF_0366 NC_011769.1 430499 431161 R PFAM: protein of unknown function DUF374; KEGG: dde:Dde_1961 hypothetical protein; hypothetical protein complement(430499..431161) Desulfovibrio vulgaris str. 'Miyazaki F' 7172250 YP_002434792.1 CDS DvMF_0367 NC_011769.1 431158 433014 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: ATPase AAA; KEGG: dde:Dde_1960 lipid A export ATP-binding/permease MsbA; ABC transporter complement(431158..433014) Desulfovibrio vulgaris str. 'Miyazaki F' 7172251 YP_002434793.1 CDS DvMF_0368 NC_011769.1 433127 433771 D KEGG: dde:Dde_1959 hypothetical protein; hypothetical protein 433127..433771 Desulfovibrio vulgaris str. 'Miyazaki F' 7172252 YP_002434794.1 CDS DvMF_0369 NC_011769.1 434506 435261 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: dde:Dde_1958 pseudouridine synthase, Rsu; pseudouridine synthase 434506..435261 Desulfovibrio vulgaris str. 'Miyazaki F' 7172253 YP_002434795.1 CDS DvMF_0370 NC_011769.1 435565 436266 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dde:Dde_1956 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(435565..436266) Desulfovibrio vulgaris str. 'Miyazaki F' 7172254 YP_002434796.1 CDS DvMF_0371 NC_011769.1 436601 439333 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: dde:Dde_1955 FtsK/SpoIIIE family protein; cell division protein FtsK complement(436601..439333) Desulfovibrio vulgaris str. 'Miyazaki F' 7172255 YP_002434797.1 CDS DvMF_0372 NC_011769.1 439453 440010 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(439453..440010) Desulfovibrio vulgaris str. 'Miyazaki F' 7172256 YP_002434798.1 CDS DvMF_0373 NC_011769.1 440048 440527 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(440048..440527) Desulfovibrio vulgaris str. 'Miyazaki F' 7172257 YP_002434799.1 CDS engB NC_011769.1 440779 441543 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 440779..441543 Desulfovibrio vulgaris str. 'Miyazaki F' 7172258 YP_002434800.1 CDS DvMF_0375 NC_011769.1 441731 442816 R PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease; YjgP/YjgQ family permease complement(441731..442816) Desulfovibrio vulgaris str. 'Miyazaki F' 7172259 YP_002434801.1 CDS DvMF_0376 NC_011769.1 442813 443952 R PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1948 permease; YjgP/YjgQ family permease complement(442813..443952) Desulfovibrio vulgaris str. 'Miyazaki F' 7172260 YP_002434802.1 CDS DvMF_0377 NC_011769.1 444005 444202 R KEGG: sfu:Sfum_0324 hypothetical protein; hypothetical protein complement(444005..444202) Desulfovibrio vulgaris str. 'Miyazaki F' 7172261 YP_002434803.1 CDS DvMF_0378 NC_011769.1 444480 445277 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 444480..445277 Desulfovibrio vulgaris str. 'Miyazaki F' 7172262 YP_002434804.1 CDS DvMF_0379 NC_011769.1 445762 447087 D PFAM: natural resistance-associated macrophage protein; KEGG: tpd:Teth39_1570 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 445762..447087 Desulfovibrio vulgaris str. 'Miyazaki F' 7172264 YP_002434805.1 CDS DvMF_0380 NC_011769.1 447301 447816 D KEGG: dde:Dde_1072 hypothetical protein; hypothetical protein 447301..447816 Desulfovibrio vulgaris str. 'Miyazaki F' 7172265 YP_002434806.1 CDS DvMF_0381 NC_011769.1 448283 449803 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; citrate transporter; Na+/H+ antiporter NhaC; KEGG: dde:Dde_1074 L-lactate transport; L-lactate transport complement(448283..449803) Desulfovibrio vulgaris str. 'Miyazaki F' 7172266 YP_002434807.1 CDS DvMF_0382 NC_011769.1 450195 450878 R TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: dde:Dde_2385 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU complement(450195..450878) Desulfovibrio vulgaris str. 'Miyazaki F' 7172267 YP_002434808.1 CDS greA NC_011769.1 451151 451633 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(451151..451633) Desulfovibrio vulgaris str. 'Miyazaki F' 7172268 YP_002434809.1 CDS DvMF_0384 NC_011769.1 452058 452252 D hypothetical protein 452058..452252 Desulfovibrio vulgaris str. 'Miyazaki F' 7172269 YP_002434810.1 CDS DvMF_0385 NC_011769.1 452379 452804 R hypothetical protein complement(452379..452804) Desulfovibrio vulgaris str. 'Miyazaki F' 7172270 YP_002434811.1 CDS DvMF_0386 NC_011769.1 453068 453691 D KEGG: dde:Dde_1940 hypothetical protein; hypothetical protein 453068..453691 Desulfovibrio vulgaris str. 'Miyazaki F' 7172271 YP_002434812.1 CDS DvMF_0387 NC_011769.1 454678 455457 R PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_06937 amino acid ABC transporter periplasmic protein; family 3 extracellular solute-binding protein complement(454678..455457) Desulfovibrio vulgaris str. 'Miyazaki F' 7172273 YP_002434813.1 CDS DvMF_0388 NC_011769.1 456118 456942 D KEGG: gsu:GSU1295 hypothetical protein; hypothetical protein 456118..456942 Desulfovibrio vulgaris str. 'Miyazaki F' 7172274 YP_002434814.1 CDS DvMF_0389 NC_011769.1 457193 458038 D PFAM: penicillin-binding protein transpeptidase; KEGG: rfe:RF_1275 beta-lactamase class D; beta-lactamase 457193..458038 Desulfovibrio vulgaris str. 'Miyazaki F' 7172275 YP_002434815.1 CDS DvMF_0390 NC_011769.1 458306 459697 R KEGG: dde:Dde_1847 hypothetical protein; hypothetical protein complement(458306..459697) Desulfovibrio vulgaris str. 'Miyazaki F' 7172276 YP_002434816.1 CDS DvMF_0391 NC_011769.1 460009 460665 R PFAM: carbonic anhydrase; KEGG: gsu:GSU2307 carbonic anhydrase; carbonate dehydratase complement(460009..460665) Desulfovibrio vulgaris str. 'Miyazaki F' 7172277 YP_002434817.1 CDS DvMF_0392 NC_011769.1 460888 463176 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_3821 cache sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase complement(460888..463176) Desulfovibrio vulgaris str. 'Miyazaki F' 7172278 YP_002434818.1 CDS DvMF_0393 NC_011769.1 463546 464997 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: aba:acid345_2245 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(463546..464997) Desulfovibrio vulgaris str. 'Miyazaki F' 7172279 YP_002434819.1 CDS DvMF_0394 NC_011769.1 465303 465671 R PFAM: protein of unknown function DUF1653; KEGG: lch:Lcho_0448 protein of unknown function DUF1653; hypothetical protein complement(465303..465671) Desulfovibrio vulgaris str. 'Miyazaki F' 7172280 YP_002434820.1 CDS DvMF_0395 NC_011769.1 465810 466466 R PFAM: protein of unknown function DUF162; KEGG: rru:Rru_A1411 protein of unknown function DUF162; hypothetical protein complement(465810..466466) Desulfovibrio vulgaris str. 'Miyazaki F' 7172281 YP_002434821.1 CDS DvMF_0396 NC_011769.1 466459 467886 R TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: dde:Dde_1843 iron-sulfur cluster binding protein; iron-sulfur cluster binding protein complement(466459..467886) Desulfovibrio vulgaris str. 'Miyazaki F' 7172282 YP_002434822.1 CDS DvMF_0397 NC_011769.1 467879 468640 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1842 hypothetical protein; hypothetical protein complement(467879..468640) Desulfovibrio vulgaris str. 'Miyazaki F' 7172283 YP_002434823.1 CDS DvMF_0398 NC_011769.1 469064 469867 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dde:Dde_1841 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR 469064..469867 Desulfovibrio vulgaris str. 'Miyazaki F' 7172284 YP_002434824.1 CDS DvMF_0399 NC_011769.1 470028 470630 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: dde:Dde_1840 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 470028..470630 Desulfovibrio vulgaris str. 'Miyazaki F' 7172285 YP_002434825.1 CDS DvMF_0400 NC_011769.1 471023 471763 R KEGG: dde:Dde_2065 lipoprotein; lipoprotein complement(471023..471763) Desulfovibrio vulgaris str. 'Miyazaki F' 7172286 YP_002434826.1 CDS DvMF_0401 NC_011769.1 471756 472679 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2066 thioredoxin reductase (NADPH); thioredoxin-disulfide reductase complement(471756..472679) Desulfovibrio vulgaris str. 'Miyazaki F' 7172287 YP_002434827.1 CDS DvMF_0402 NC_011769.1 472681 473004 R TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: dde:Dde_2067 thioredoxin; thioredoxin complement(472681..473004) Desulfovibrio vulgaris str. 'Miyazaki F' 7172288 YP_002434828.1 CDS DvMF_0403 NC_011769.1 473238 474485 R KEGG: dde:Dde_2068 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase complement(473238..474485) Desulfovibrio vulgaris str. 'Miyazaki F' 7172289 YP_002434829.1 CDS DvMF_0404 NC_011769.1 474710 475723 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(474710..475723) Desulfovibrio vulgaris str. 'Miyazaki F' 7172290 YP_002434830.1 CDS DvMF_0405 NC_011769.1 475875 476840 R KEGG: dde:Dde_2070 hypothetical protein; hypothetical protein complement(475875..476840) Desulfovibrio vulgaris str. 'Miyazaki F' 7172291 YP_002434831.1 CDS DvMF_0406 NC_011769.1 476982 477947 R PFAM: hypothetical protein; KEGG: dde:Dde_2071 response regulator receiver/SARP domain-containing protein; hypothetical protein complement(476982..477947) Desulfovibrio vulgaris str. 'Miyazaki F' 7172292 YP_002434832.1 CDS DvMF_0407 NC_011769.1 477931 478260 R PFAM: septum formation initiator; KEGG: dde:Dde_2072 cell division protein FtsB; septum formation initiator complement(477931..478260) Desulfovibrio vulgaris str. 'Miyazaki F' 7172293 YP_002434833.1 CDS DvMF_0408 NC_011769.1 478266 478538 R KEGG: dde:Dde_2073 hypothetical protein; hypothetical protein complement(478266..478538) Desulfovibrio vulgaris str. 'Miyazaki F' 7172294 YP_002434834.1 CDS DvMF_0409 NC_011769.1 478575 479162 R TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dde:Dde_2074 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase complement(478575..479162) Desulfovibrio vulgaris str. 'Miyazaki F' 7172295 YP_002434835.1 CDS DvMF_0410 NC_011769.1 479356 480252 R PFAM: Mrp protein; KEGG: dde:Dde_2075 hypothetical protein; Mrp protein complement(479356..480252) Desulfovibrio vulgaris str. 'Miyazaki F' 7172296 YP_002434836.1 CDS DvMF_0411 NC_011769.1 480455 481042 R PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_2076 hypothetical protein; hypothetical protein complement(480455..481042) Desulfovibrio vulgaris str. 'Miyazaki F' 7172297 YP_002434837.1 CDS DvMF_0412 NC_011769.1 481260 481907 R KEGG: dde:Dde_2077 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase complement(481260..481907) Desulfovibrio vulgaris str. 'Miyazaki F' 7172298 YP_002434838.1 CDS DvMF_0413 NC_011769.1 482452 482880 D PFAM: CBS domain containing protein; KEGG: dde:Dde_2078 CBS; signal transduction protein with CBS domains 482452..482880 Desulfovibrio vulgaris str. 'Miyazaki F' 7172299 YP_002434839.1 CDS DvMF_0414 NC_011769.1 482956 484266 D PFAM: peptidase M23; KEGG: dde:Dde_2079 M24/M37 family peptidase; peptidase M23 482956..484266 Desulfovibrio vulgaris str. 'Miyazaki F' 7172300 YP_002434840.1 CDS DvMF_0415 NC_011769.1 484548 484940 R PFAM: protein of unknown function DUF488; KEGG: gme:Gmet_0156 protein of unknown function DUF488; hypothetical protein complement(484548..484940) Desulfovibrio vulgaris str. 'Miyazaki F' 7172301 YP_002434841.1 CDS DvMF_0416 NC_011769.1 485193 488771 R PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_2080 phosphoenolpyruvate synthase; pyruvate phosphate dikinase complement(485193..488771) Desulfovibrio vulgaris str. 'Miyazaki F' 7172302 YP_002434842.1 CDS DvMF_0417 NC_011769.1 489026 492730 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(489026..492730) Desulfovibrio vulgaris str. 'Miyazaki F' 7172303 YP_002434843.1 CDS DvMF_0418 NC_011769.1 492816 493985 R TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dde:Dde_2082 biotin--acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase complement(492816..493985) Desulfovibrio vulgaris str. 'Miyazaki F' 7172304 YP_002434844.1 CDS DvMF_0419 NC_011769.1 494082 495497 D KEGG: dde:Dde_2083 tRNA nucleotidyltransferase, PFAM: polynucleotide adenylyltransferase region; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 494082..495497 Desulfovibrio vulgaris str. 'Miyazaki F' 7172305 YP_002434845.1 CDS DvMF_0420 NC_011769.1 495720 496640 R catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase complement(495720..496640) Desulfovibrio vulgaris str. 'Miyazaki F' 7172306 YP_002434846.1 CDS DvMF_0421 NC_011769.1 496794 497363 R KEGG: dde:Dde_1777 hypothetical protein; hypothetical protein complement(496794..497363) Desulfovibrio vulgaris str. 'Miyazaki F' 7172307 YP_002434847.1 CDS DvMF_0422 NC_011769.1 497493 497957 R PFAM: PTS system sorbose subfamily IIB component; KEGG: dde:Dde_1776 PTS system, IIB component; PTS system sorbose subfamily transporter subunit IIB complement(497493..497957) Desulfovibrio vulgaris str. 'Miyazaki F' 7172308 YP_002434848.1 CDS DvMF_0423 NC_011769.1 497962 498480 R PFAM: PTS system fructose subfamily IIA component; KEGG: dde:Dde_1775 PTS system, IIA component; PTS system fructose subfamily transporter subunit IIA complement(497962..498480) Desulfovibrio vulgaris str. 'Miyazaki F' 7172309 YP_002434849.1 CDS DvMF_0424 NC_011769.1 498728 499609 R PFAM: conserved hypothetical protein; KEGG: dde:Dde_1774 hypothetical protein; hypothetical protein complement(498728..499609) Desulfovibrio vulgaris str. 'Miyazaki F' 7172310 YP_002434850.1 CDS DvMF_0425 NC_011769.1 499989 500438 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: dde:Dde_1773 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(499989..500438) Desulfovibrio vulgaris str. 'Miyazaki F' 7172311 YP_002434851.1 CDS DvMF_0426 NC_011769.1 500448 500993 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dde:Dde_1772 SSU ribosomal protein S30P / sigma 54 modulation protein; sigma 54 modulation protein/ribosomal protein S30EA complement(500448..500993) Desulfovibrio vulgaris str. 'Miyazaki F' 7172312 YP_002434852.1 CDS DvMF_0427 NC_011769.1 501115 502548 R TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: dde:Dde_1771 sigma-54 factor; RNA polymerase sigma 54 subunit RpoN complement(501115..502548) Desulfovibrio vulgaris str. 'Miyazaki F' 7172313 YP_002434853.1 CDS DvMF_0428 NC_011769.1 502943 503668 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1770 ATPase; ABC transporter complement(502943..503668) Desulfovibrio vulgaris str. 'Miyazaki F' 7172314 YP_002434854.1 CDS DvMF_0429 NC_011769.1 503665 504339 R PFAM: OstA family protein; KEGG: dde:Dde_1769 hypothetical protein; OstA family protein complement(503665..504339) Desulfovibrio vulgaris str. 'Miyazaki F' 7172315 YP_002434855.1 CDS DvMF_0430 NC_011769.1 504336 505145 R PFAM: protein of unknown function DUF1239; KEGG: lip:LI0454 hypothetical protein; hypothetical protein complement(504336..505145) Desulfovibrio vulgaris str. 'Miyazaki F' 7172316 YP_002434856.1 CDS DvMF_0431 NC_011769.1 505142 505669 R TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: dde:Dde_1767 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(505142..505669) Desulfovibrio vulgaris str. 'Miyazaki F' 7172317 YP_002434857.1 CDS DvMF_0432 NC_011769.1 505659 506471 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(505659..506471) Desulfovibrio vulgaris str. 'Miyazaki F' 7172318 YP_002434858.1 CDS pyrG NC_011769.1 507089 508741 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(507089..508741) Desulfovibrio vulgaris str. 'Miyazaki F' 7172319 YP_002434859.1 CDS DvMF_0434 NC_011769.1 509259 510068 D KEGG: dde:Dde_1764 phosphoribosylformylglycinamidine synthase I; phosphoribosylformylglycinamidine synthase 509259..510068 Desulfovibrio vulgaris str. 'Miyazaki F' 7172320 YP_002434860.1 CDS DvMF_0435 NC_011769.1 510355 510753 D KEGG: dde:Dde_1763 hypothetical protein; hypothetical protein 510355..510753 Desulfovibrio vulgaris str. 'Miyazaki F' 7172321 YP_002434861.1 CDS DvMF_0436 NC_011769.1 510995 511432 D KEGG: dde:Dde_1759 hypothetical protein; hypothetical protein 510995..511432 Desulfovibrio vulgaris str. 'Miyazaki F' 7172322 YP_002434862.1 CDS DvMF_0437 NC_011769.1 511693 514335 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: bph:Bphy_1097 magnesium-translocating P-type ATPase; magnesium-translocating P-type ATPase 511693..514335 Desulfovibrio vulgaris str. 'Miyazaki F' 7172323 YP_002434863.1 CDS DvMF_0438 NC_011769.1 514448 514726 R KEGG: dde:Dde_1758 hypothetical protein; hypothetical protein complement(514448..514726) Desulfovibrio vulgaris str. 'Miyazaki F' 7172324 YP_002434864.1 CDS DvMF_0439 NC_011769.1 514727 516400 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(514727..516400) Desulfovibrio vulgaris str. 'Miyazaki F' 7172325 YP_002434865.1 CDS DvMF_0440 NC_011769.1 516397 516984 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: lip:LI1014 hypothetical protein; iojap family protein complement(516397..516984) Desulfovibrio vulgaris str. 'Miyazaki F' 7172326 YP_002434866.1 CDS DvMF_0441 NC_011769.1 517207 517860 R PFAM: nitroreductase; KEGG: hmo:HM1_3019 nitroreductase family protein; nitroreductase complement(517207..517860) Desulfovibrio vulgaris str. 'Miyazaki F' 7172327 YP_002434867.1 CDS DvMF_0442 NC_011769.1 518327 519631 D KEGG: dde:Dde_2084 phenylacetate-CoA ligase; phenylacetate--CoA ligase 518327..519631 Desulfovibrio vulgaris str. 'Miyazaki F' 7172328 YP_002434868.1 CDS DvMF_0443 NC_011769.1 519728 520174 R KEGG: bbt:BBta_5793 hypothetical protein; hypothetical protein complement(519728..520174) Desulfovibrio vulgaris str. 'Miyazaki F' 7172329 YP_002434869.1 CDS DvMF_0444 NC_011769.1 520184 520546 R hypothetical protein complement(520184..520546) Desulfovibrio vulgaris str. 'Miyazaki F' 7172330 YP_002434870.1 CDS DvMF_0445 NC_011769.1 520727 521233 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2085 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(520727..521233) Desulfovibrio vulgaris str. 'Miyazaki F' 7172331 YP_002434871.1 CDS DvMF_0446 NC_011769.1 521240 522331 R unknown function; probable involvement in glutamate synthesis; glutamate synthase subunit beta complement(521240..522331) Desulfovibrio vulgaris str. 'Miyazaki F' 7172332 YP_002434872.1 CDS DvMF_0447 NC_011769.1 522631 523062 D PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_2088 ACT domain-containing protein; amino acid-binding ACT protein 522631..523062 Desulfovibrio vulgaris str. 'Miyazaki F' 7172333 YP_002434873.1 CDS DvMF_0448 NC_011769.1 523352 525337 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_3195 molybdopterin oxidoreductase; molybdopterin oxidoreductase 523352..525337 Desulfovibrio vulgaris str. 'Miyazaki F' 7172334 YP_002434874.1 CDS DvMF_0449 NC_011769.1 525570 527240 R KEGG: dde:Dde_2091 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; NAD+ synthetase complement(525570..527240) Desulfovibrio vulgaris str. 'Miyazaki F' 7172335 YP_002434875.1 CDS DvMF_0450 NC_011769.1 527519 528298 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(527519..528298) Desulfovibrio vulgaris str. 'Miyazaki F' 7172336 YP_002434876.1 CDS DvMF_0451 NC_011769.1 528382 530808 R KEGG: dde:Dde_2093 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: DNA-binding protein; NAD-dependent DNA ligase; NAD-dependent DNA ligase complement(528382..530808) Desulfovibrio vulgaris str. 'Miyazaki F' 7172337 YP_002434877.1 CDS DvMF_0452 NC_011769.1 530805 531647 R KEGG: dde:Dde_2094 hypothetical protein; hypothetical protein complement(530805..531647) Desulfovibrio vulgaris str. 'Miyazaki F' 7172338 YP_002434878.1 CDS DvMF_0453 NC_011769.1 531644 532684 R PFAM: TrkA-N domain protein; TrkA-C domain protein; ion transport 2 domain protein; KEGG: dde:Dde_2095 TrkA family potassium uptake protein; TrkA-N domain-containing protein complement(531644..532684) Desulfovibrio vulgaris str. 'Miyazaki F' 7172339 YP_002434879.1 CDS DvMF_0454 NC_011769.1 532901 534943 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-subunit beta is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(532901..534943) Desulfovibrio vulgaris str. 'Miyazaki F' 7172340 YP_002434880.1 CDS DvMF_0455 NC_011769.1 535265 535786 D KEGG: dde:Dde_2097 hypothetical protein; hypothetical protein 535265..535786 Desulfovibrio vulgaris str. 'Miyazaki F' 7172341 YP_002434881.1 CDS DvMF_0456 NC_011769.1 535850 535969 D hypothetical protein 535850..535969 Desulfovibrio vulgaris str. 'Miyazaki F' 7172342 YP_002434882.1 CDS DvMF_0457 NC_011769.1 536001 536834 R KEGG: ank:AnaeK_0840 leucyl/phenylalanyl-tRNA/protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase complement(536001..536834) Desulfovibrio vulgaris str. 'Miyazaki F' 7172343 YP_002434883.1 CDS DvMF_0458 NC_011769.1 536831 539281 R KEGG: dde:Dde_2099 ATPase; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA; ATP-dependent Clp protease ATP-binding subunit clpA; SMART: ATPase AAA; ATP-dependent Clp protease ATP-binding subunit clpA complement(536831..539281) Desulfovibrio vulgaris str. 'Miyazaki F' 7172344 YP_002434884.1 CDS DvMF_0459 NC_011769.1 539283 539585 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: dde:Dde_2100 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS complement(539283..539585) Desulfovibrio vulgaris str. 'Miyazaki F' 7172345 YP_002434885.1 CDS DvMF_0460 NC_011769.1 540063 540740 R PFAM: adenylate cyclase; KEGG: dde:Dde_2101 adenylate cyclase; adenylate cyclase complement(540063..540740) Desulfovibrio vulgaris str. 'Miyazaki F' 7172346 YP_002434886.1 CDS DvMF_0461 NC_011769.1 540863 541237 D PFAM: Camphor resistance CrcB protein; KEGG: dde:Dde_2102 camphor resistance protein CrcB; camphor resistance protein CrcB 540863..541237 Desulfovibrio vulgaris str. 'Miyazaki F' 7172347 YP_002434887.1 CDS DvMF_0462 NC_011769.1 541348 541743 D PFAM: protein of unknown function DUF190; KEGG: dde:Dde_2103 hypothetical protein; hypothetical protein 541348..541743 Desulfovibrio vulgaris str. 'Miyazaki F' 7172348 YP_002434888.1 CDS DvMF_0463 NC_011769.1 541806 542342 R PFAM: GCN5-related N-acetyltransferase; KEGG: bph:Bphy_6404 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(541806..542342) Desulfovibrio vulgaris str. 'Miyazaki F' 7172349 YP_002434889.1 CDS DvMF_0464 NC_011769.1 542477 543154 R PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mem:Memar_1210 nitrite and sulphite reductase 4Fe-4S region; nitrite and sulfite reductase 4Fe-4S region complement(542477..543154) Desulfovibrio vulgaris str. 'Miyazaki F' 7172350 YP_002434890.1 CDS DvMF_0465 NC_011769.1 543275 544345 R PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_2104 response regulator receiver domain-containing protein; response regulator receiver modulated CheB methylesterase complement(543275..544345) Desulfovibrio vulgaris str. 'Miyazaki F' 7172351 YP_002434891.1 CDS DvMF_0466 NC_011769.1 544342 545229 R PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_2105 MCP methyltransferase, CheR-type; chemotaxis protein CheR complement(544342..545229) Desulfovibrio vulgaris str. 'Miyazaki F' 7172352 YP_002434892.1 CDS DvMF_0467 NC_011769.1 545226 547400 R PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_2106 chemotaxis protein CheA; chemotaxis protein CheA complement(545226..547400) Desulfovibrio vulgaris str. 'Miyazaki F' 7172353 YP_002434893.1 CDS DvMF_0468 NC_011769.1 547978 548340 R PFAM: response regulator receiver; KEGG: dde:Dde_2107 response regulator receiver domain-containing protein; response regulator receiver protein complement(547978..548340) Desulfovibrio vulgaris str. 'Miyazaki F' 7172354 YP_002434894.1 CDS DvMF_0469 NC_011769.1 548535 550361 R KEGG: dde:Dde_2108 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(548535..550361) Desulfovibrio vulgaris str. 'Miyazaki F' 7172355 YP_002434895.1 CDS DvMF_0470 NC_011769.1 550733 552838 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: dde:Dde_1752 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(550733..552838) Desulfovibrio vulgaris str. 'Miyazaki F' 7172356 YP_002434896.1 CDS DvMF_0471 NC_011769.1 553249 554727 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(553249..554727) Desulfovibrio vulgaris str. 'Miyazaki F' 7172357 YP_002434897.1 CDS DvMF_0472 NC_011769.1 554737 555705 R KEGG: dde:Dde_2111 hypothetical protein; hypothetical protein complement(554737..555705) Desulfovibrio vulgaris str. 'Miyazaki F' 7172358 YP_002434898.1 CDS DvMF_0473 NC_011769.1 555775 556314 R KEGG: dde:Dde_2112 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(555775..556314) Desulfovibrio vulgaris str. 'Miyazaki F' 7172359 YP_002434899.1 CDS DvMF_0474 NC_011769.1 556483 556950 R catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase complement(556483..556950) Desulfovibrio vulgaris str. 'Miyazaki F' 7172360 YP_002434900.1 CDS DvMF_0475 NC_011769.1 556951 557424 R PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_2114 thioredoxin family protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(556951..557424) Desulfovibrio vulgaris str. 'Miyazaki F' 7172361 YP_002434901.1 CDS DvMF_0476 NC_011769.1 557642 560098 R PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dde:Dde_2115 methionine synthase (B12-dependent); homocysteine S-methyltransferase complement(557642..560098) Desulfovibrio vulgaris str. 'Miyazaki F' 7172362 YP_002434902.1 CDS DvMF_0477 NC_011769.1 560337 561761 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: dde:Dde_2116 sigma 70 family protein; RNA polymerase sigma 70 family subunit 560337..561761 Desulfovibrio vulgaris str. 'Miyazaki F' 7172363 YP_002434903.1 CDS DvMF_0478 NC_011769.1 561797 563596 D PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_2117 hypothetical protein; hypothetical protein 561797..563596 Desulfovibrio vulgaris str. 'Miyazaki F' 7172364 YP_002434904.1 CDS DvMF_0479 NC_011769.1 563596 564486 D KEGG: dde:Dde_2118 hypothetical protein; hypothetical protein 563596..564486 Desulfovibrio vulgaris str. 'Miyazaki F' 7172365 YP_002434905.1 CDS DvMF_0480 NC_011769.1 564724 565107 D KEGG: dde:Dde_2119 hypothetical protein; hypothetical protein 564724..565107 Desulfovibrio vulgaris str. 'Miyazaki F' 7172366 YP_002434906.1 CDS DvMF_0481 NC_011769.1 565376 565828 D KEGG: dde:Dde_2120 ribose-5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase 565376..565828 Desulfovibrio vulgaris str. 'Miyazaki F' 7172367 YP_002434907.1 CDS cysS NC_011769.1 565960 567417 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 565960..567417 Desulfovibrio vulgaris str. 'Miyazaki F' 7172368 YP_002434908.1 CDS DvMF_0483 NC_011769.1 567426 568898 D PFAM: hypothetical protein; peptidase M48 Ste24p; SMART: hypothetical protein; KEGG: dde:Dde_2122 TPR repeat-containing protein; peptidase M48 Ste24p 567426..568898 Desulfovibrio vulgaris str. 'Miyazaki F' 7172369 YP_002434909.1 CDS DvMF_0484 NC_011769.1 569014 569622 D PFAM: Appr-1-p processing domain protein; KEGG: ank:AnaeK_0859 Appr-1-p processing domain protein; Appr-1-p processing protein 569014..569622 Desulfovibrio vulgaris str. 'Miyazaki F' 7172370 YP_002434910.1 CDS DvMF_0485 NC_011769.1 569723 570280 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 569723..570280 Desulfovibrio vulgaris str. 'Miyazaki F' 7172371 YP_002434911.1 CDS DvMF_0486 NC_011769.1 570277 571266 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 570277..571266 Desulfovibrio vulgaris str. 'Miyazaki F' 7172372 YP_002434912.1 CDS DvMF_0487 NC_011769.1 571455 572393 D KEGG: dde:Dde_2126 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 571455..572393 Desulfovibrio vulgaris str. 'Miyazaki F' 7172374 YP_002434913.1 CDS DvMF_0488 NC_011769.1 572455 573030 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 572455..573030 Desulfovibrio vulgaris str. 'Miyazaki F' 7172375 YP_002434914.1 CDS DvMF_0489 NC_011769.1 573337 573945 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 573337..573945 Desulfovibrio vulgaris str. 'Miyazaki F' 7172376 YP_002434915.1 CDS DvMF_0490 NC_011769.1 574299 574814 D PFAM: transcription factor CarD; KEGG: dde:Dde_2129 CarD family transcriptional regulator; CarD family transcriptional regulator 574299..574814 Desulfovibrio vulgaris str. 'Miyazaki F' 7172377 YP_002434916.1 CDS rho NC_011769.1 575162 576412 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 575162..576412 Desulfovibrio vulgaris str. 'Miyazaki F' 7172378 YP_002434917.1 CDS DvMF_0492 NC_011769.1 576558 578495 R PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pna:Pnap_4517 bilirubin oxidase; multicopper oxidase type 2 complement(576558..578495) Desulfovibrio vulgaris str. 'Miyazaki F' 7172379 YP_002434918.1 CDS DvMF_0493 NC_011769.1 578804 579874 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2050 diguanylate cyclase; diguanylate cyclase complement(578804..579874) Desulfovibrio vulgaris str. 'Miyazaki F' 7172380 YP_002434919.1 CDS DvMF_0494 NC_011769.1 580069 581841 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: dde:Dde_2052 sigma-70 factor; RpoD subfamily RNA polymerase sigma-70 subunit complement(580069..581841) Desulfovibrio vulgaris str. 'Miyazaki F' 7172381 YP_002434920.1 CDS DvMF_0495 NC_011769.1 581834 583633 R KEGG: dde:Dde_2053 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase complement(581834..583633) Desulfovibrio vulgaris str. 'Miyazaki F' 7172382 YP_002434921.1 CDS DvMF_0496 NC_011769.1 583728 586181 R PFAM: DNA mismatch repair protein MutS; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: dde:Dde_2054 DNA mismatch repair protein MutS-like; Smr protein/MutS2 complement(583728..586181) Desulfovibrio vulgaris str. 'Miyazaki F' 7172383 YP_002434922.1 CDS DvMF_0497 NC_011769.1 586190 586636 R KEGG: dde:Dde_2055 GatB/YqeY family protein; GatB/YqeY family protein complement(586190..586636) Desulfovibrio vulgaris str. 'Miyazaki F' 7172384 YP_002434923.1 CDS rpsU NC_011769.1 586768 586971 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(586768..586971) Desulfovibrio vulgaris str. 'Miyazaki F' 7172385 YP_002434924.1 CDS DvMF_0499 NC_011769.1 587167 587355 R KEGG: dde:Dde_2057 hypothetical protein; hypothetical protein complement(587167..587355) Desulfovibrio vulgaris str. 'Miyazaki F' 7172386 YP_002434925.1 CDS DvMF_0500 NC_011769.1 587371 587643 R PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_2058 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(587371..587643) Desulfovibrio vulgaris str. 'Miyazaki F' 7172387 YP_002434926.1 CDS ksgA NC_011769.1 587835 588647 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(587835..588647) Desulfovibrio vulgaris str. 'Miyazaki F' 7172388 YP_002434927.1 CDS DvMF_0502 NC_011769.1 588845 589477 R KEGG: dde:Dde_2062 hypothetical protein; hypothetical protein complement(588845..589477) Desulfovibrio vulgaris str. 'Miyazaki F' 7172389 YP_002434928.1 CDS DvMF_0503 NC_011769.1 589535 591631 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(589535..591631) Desulfovibrio vulgaris str. 'Miyazaki F' 7172390 YP_002434929.1 CDS DvMF_0504 NC_011769.1 591765 592781 R KEGG: dde:Dde_2064 hypothetical protein; hypothetical protein complement(591765..592781) Desulfovibrio vulgaris str. 'Miyazaki F' 7172391 YP_002434930.1 CDS DvMF_0505 NC_011769.1 592953 594203 R KEGG: dde:Dde_1838 hypothetical protein; hypothetical protein complement(592953..594203) Desulfovibrio vulgaris str. 'Miyazaki F' 7172392 YP_002434931.1 CDS DvMF_0506 NC_011769.1 594654 595739 D PFAM: PGAP1 family protein; KEGG: dde:Dde_1837 acetyltransferase and hydrolase with the alpha/beta hydrolase fold-like; PGAP1 family protein 594654..595739 Desulfovibrio vulgaris str. 'Miyazaki F' 7172393 YP_002434932.1 CDS DvMF_0507 NC_011769.1 595724 596998 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1836 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(595724..596998) Desulfovibrio vulgaris str. 'Miyazaki F' 7172394 YP_002434933.1 CDS DvMF_0508 NC_011769.1 596995 598908 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1835 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(596995..598908) Desulfovibrio vulgaris str. 'Miyazaki F' 7172395 YP_002434934.1 CDS DvMF_0509 NC_011769.1 599259 600755 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1834 diguanylate cyclase; diguanylate cyclase 599259..600755 Desulfovibrio vulgaris str. 'Miyazaki F' 7172396 YP_002434935.1 CDS DvMF_0510 NC_011769.1 600918 601412 R TIGRFAM: C_GCAxxG_C_C family protein; KEGG: glo:Glov_3529 C_GCAxxG_C_C family protein; C_GCAxxG_C_C family protein complement(600918..601412) Desulfovibrio vulgaris str. 'Miyazaki F' 7172397 YP_002434936.1 CDS DvMF_0511 NC_011769.1 601559 603658 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfu:Sfum_1907 LysR family transcriptional regulator; LysR family transcriptional regulator 601559..603658 Desulfovibrio vulgaris str. 'Miyazaki F' 7172398 YP_002434937.1 CDS DvMF_0512 NC_011769.1 604017 604727 D TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: dde:Dde_1833 hypothetical protein; hypothetical protein 604017..604727 Desulfovibrio vulgaris str. 'Miyazaki F' 7172399 YP_002434938.1 CDS DvMF_0513 NC_011769.1 604864 605730 R PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bce:BC4053 GntR family transcriptional regulator; GntR family transcriptional regulator complement(604864..605730) Desulfovibrio vulgaris str. 'Miyazaki F' 7172400 YP_002434939.1 CDS DvMF_0514 NC_011769.1 605944 606786 R catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase complement(605944..606786) Desulfovibrio vulgaris str. 'Miyazaki F' 7172401 YP_002434940.1 CDS DvMF_0515 NC_011769.1 607079 608821 R catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase complement(607079..608821) Desulfovibrio vulgaris str. 'Miyazaki F' 7172402 YP_002434941.1 CDS DvMF_0516 NC_011769.1 609138 610517 D PFAM: aminotransferase class-III; KEGG: dps:DP0541 aminotransferase; class III aminotransferase 609138..610517 Desulfovibrio vulgaris str. 'Miyazaki F' 7172403 YP_002434942.1 CDS DvMF_0517 NC_011769.1 610546 611655 D TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dde:Dde_1553 L-alanine dehydrogenase; alanine dehydrogenase 610546..611655 Desulfovibrio vulgaris str. 'Miyazaki F' 7172404 YP_002434943.1 CDS DvMF_0518 NC_011769.1 611846 612601 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mja:MJ0412 nitrate transporter protein (NrtC) homolog (CmpC); ABC transporter 611846..612601 Desulfovibrio vulgaris str. 'Miyazaki F' 7172405 YP_002434944.1 CDS DvMF_0519 NC_011769.1 612678 613742 D KEGG: vei:Veis_0768 ABC-type nitrate/sulfonate/bicarbonate transporters periplasmic components-like protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein 612678..613742 Desulfovibrio vulgaris str. 'Miyazaki F' 7172406 YP_002434945.1 CDS DvMF_0520 NC_011769.1 613812 614609 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rpt:Rpal_4641 binding-protein-dependent transport systems inner membrane component; ABC transporter inner membrane protein 613812..614609 Desulfovibrio vulgaris str. 'Miyazaki F' 7172407 YP_002434946.1 CDS DvMF_0521 NC_011769.1 614613 615491 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: vei:Veis_1108 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 614613..615491 Desulfovibrio vulgaris str. 'Miyazaki F' 7172408 YP_002434947.1 CDS DvMF_0522 NC_011769.1 615628 616377 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mtp:Mthe_0218 ABC transporter; ABC transporter 615628..616377 Desulfovibrio vulgaris str. 'Miyazaki F' 7172409 YP_002434948.1 CDS DvMF_0523 NC_011769.1 616522 617925 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: dde:Dde_1832 magnesium transporter; magnesium transporter complement(616522..617925) Desulfovibrio vulgaris str. 'Miyazaki F' 7172410 YP_002434949.1 CDS DvMF_0524 NC_011769.1 618370 619278 D KEGG: dde:Dde_1831 nicotinate-nucleotide pyrophosphorylase [carboxylating]; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 618370..619278 Desulfovibrio vulgaris str. 'Miyazaki F' 7172411 YP_002434950.1 CDS DvMF_0525 NC_011769.1 619280 620329 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 619280..620329 Desulfovibrio vulgaris str. 'Miyazaki F' 7172412 YP_002434951.1 CDS DvMF_0526 NC_011769.1 620601 622193 D KEGG: dde:Dde_1829 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; L-aspartate oxidase 620601..622193 Desulfovibrio vulgaris str. 'Miyazaki F' 7172413 YP_002434952.1 CDS DvMF_0527 NC_011769.1 622429 623181 R PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: wsu:WS0137 NCAIR mutase (PurE)-related protein; 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase complement(622429..623181) Desulfovibrio vulgaris str. 'Miyazaki F' 7172414 YP_002434953.1 CDS DvMF_0528 NC_011769.1 623249 624748 R PFAM: protein of unknown function DUF111; KEGG: cbe:Cbei_0559 hypothetical protein; hypothetical protein complement(623249..624748) Desulfovibrio vulgaris str. 'Miyazaki F' 7172415 YP_002434954.1 CDS DvMF_0529 NC_011769.1 624999 626201 R PFAM: aldo/keto reductase; KEGG: mbn:Mboo_0951 aldo/keto reductase; aldo/keto reductase complement(624999..626201) Desulfovibrio vulgaris str. 'Miyazaki F' 7172416 YP_002434955.1 CDS DvMF_0530 NC_011769.1 626521 627399 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator; KEGG: dps:DP1867 transcription regulator (AraC-type); AraC family transcriptional regulator 626521..627399 Desulfovibrio vulgaris str. 'Miyazaki F' 7172417 YP_002434956.1 CDS DvMF_0531 NC_011769.1 627559 627981 R KEGG: dde:Dde_1828 hypothetical protein; hypothetical protein complement(627559..627981) Desulfovibrio vulgaris str. 'Miyazaki F' 7172418 YP_002434957.1 CDS DvMF_0532 NC_011769.1 628030 629070 R PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1827 protoheme IX farnesyltransferase; UbiA prenyltransferase complement(628030..629070) Desulfovibrio vulgaris str. 'Miyazaki F' 7172419 YP_002434958.1 CDS DvMF_0533 NC_011769.1 629143 630360 R TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; KEGG: dde:Dde_1826 cytochrome C oxidase subunit II; cytochrome C oxidase subunit II complement(629143..630360) Desulfovibrio vulgaris str. 'Miyazaki F' 7172420 YP_002434959.1 CDS DvMF_0534 NC_011769.1 630367 630657 R TIGRFAM: caa(3)-type oxidase subunit IV; KEGG: dde:Dde_1825 Caa(3)-type oxidase subunit IV; caa(3)-type oxidase subunit IV complement(630367..630657) Desulfovibrio vulgaris str. 'Miyazaki F' 7172421 YP_002434960.1 CDS DvMF_0535 NC_011769.1 630667 631263 R PFAM: cytochrome C oxidase subunit III; KEGG: dde:Dde_1824 cytochrome C oxidase subunit III; cytochrome C oxidase subunit III complement(630667..631263) Desulfovibrio vulgaris str. 'Miyazaki F' 7172422 YP_002434961.1 CDS DvMF_0536 NC_011769.1 631256 632881 R TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: dde:Dde_1823 cytochrome-c oxidase; cytochrome C oxidase subunit I complement(631256..632881) Desulfovibrio vulgaris str. 'Miyazaki F' 7172423 YP_002434962.1 CDS DvMF_0537 NC_011769.1 632964 634211 R KEGG: dde:Dde_1822 uncharacterized protein SCO1/SenC/PrrC; hypothetical protein complement(632964..634211) Desulfovibrio vulgaris str. 'Miyazaki F' 7172424 YP_002434963.1 CDS DvMF_0538 NC_011769.1 634222 634530 R PFAM: cytochrome C class I; KEGG: dde:Dde_1821 cytochrome c-553; cytochrome C class I complement(634222..634530) Desulfovibrio vulgaris str. 'Miyazaki F' 7172425 YP_002434964.1 CDS DvMF_0539 NC_011769.1 634599 634925 R PFAM: cytochrome C class I; KEGG: dde:Dde_1821 cytochrome c-553; cytochrome C class I complement(634599..634925) Desulfovibrio vulgaris str. 'Miyazaki F' 7172426 YP_002434965.1 CDS secF NC_011769.1 635182 636267 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(635182..636267) Desulfovibrio vulgaris str. 'Miyazaki F' 7172427 YP_002434966.1 CDS secD NC_011769.1 636283 637881 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(636283..637881) Desulfovibrio vulgaris str. 'Miyazaki F' 7172428 YP_002434967.1 CDS DvMF_0542 NC_011769.1 638007 638408 R TIGRFAM: preprotein translocase subunit YajC; PFAM: YajC family protein; KEGG: dde:Dde_1817 protein translocase subunit YajC; preprotein translocase subunit YajC complement(638007..638408) Desulfovibrio vulgaris str. 'Miyazaki F' 7172429 YP_002434968.1 CDS DvMF_0543 NC_011769.1 638633 640528 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: amu:Amuc_0711 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(638633..640528) Desulfovibrio vulgaris str. 'Miyazaki F' 7172430 YP_002434969.1 CDS DvMF_0544 NC_011769.1 640846 641691 R PFAM: glutamate synthase subunit alpha domain protein; KEGG: dde:Dde_1816 glutamate synthase (NADPH) GltB3 subunit; glutamate synthase subunit alpha domain-containing protein complement(640846..641691) Desulfovibrio vulgaris str. 'Miyazaki F' 7172431 YP_002434970.1 CDS DvMF_0545 NC_011769.1 641688 642797 R PFAM: glutamine amidotransferase class-II; KEGG: dde:Dde_1815 glutamate synthase (NADPH) GltB1 subunit; glutamine amidotransferase complement(641688..642797) Desulfovibrio vulgaris str. 'Miyazaki F' 7172432 YP_002434971.1 CDS DvMF_0546 NC_011769.1 643014 644537 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: dde:Dde_1814 glutamate synthase (NADPH) GltB2 subunit; glutamate synthase complement(643014..644537) Desulfovibrio vulgaris str. 'Miyazaki F' 7172433 YP_002434972.1 CDS DvMF_0547 NC_011769.1 644939 645748 R KEGG: dde:Dde_1813 carboxylesterase; carboxylesterase complement(644939..645748) Desulfovibrio vulgaris str. 'Miyazaki F' 7172434 YP_002434973.1 CDS DvMF_0548 NC_011769.1 645845 647167 D PFAM: amidohydrolase; amidohydrolase; KEGG: dde:Dde_1812 atrazine chlorohydrolase; Guanine deaminase 645845..647167 Desulfovibrio vulgaris str. 'Miyazaki F' 7172435 YP_002434974.1 CDS DvMF_0549 NC_011769.1 647304 647579 D KEGG: dde:Dde_1811 hypothetical protein; hypothetical protein 647304..647579 Desulfovibrio vulgaris str. 'Miyazaki F' 7172436 YP_002434975.1 CDS DvMF_0550 NC_011769.1 647739 648968 D catalyzes the transamination of diaminopimelate with 2-oxoglutarate to produce tetrahydrodipicolinate and glutamate; diaminopimelate aminotransferase 647739..648968 Desulfovibrio vulgaris str. 'Miyazaki F' 7172437 YP_002434976.1 CDS DvMF_0551 NC_011769.1 649036 650937 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 649036..650937 Desulfovibrio vulgaris str. 'Miyazaki F' 7172438 YP_002434977.1 CDS DvMF_0552 NC_011769.1 651285 652688 D KEGG: dde:Dde_1808 hypothetical protein; hypothetical protein 651285..652688 Desulfovibrio vulgaris str. 'Miyazaki F' 7172439 YP_002434978.1 CDS DvMF_0553 NC_011769.1 652895 653716 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: dde:Dde_1807 CBS; hypothetical protein 652895..653716 Desulfovibrio vulgaris str. 'Miyazaki F' 7172440 YP_002434979.1 CDS lnt NC_011769.1 654043 655611 D transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 654043..655611 Desulfovibrio vulgaris str. 'Miyazaki F' 7172441 YP_002434980.1 CDS DvMF_0555 NC_011769.1 655655 656786 D KEGG: bpm:BURPS1710b_3602 hypothetical protein; peptide chain release factor 2 join(655655..655729,655731..656786) Desulfovibrio vulgaris str. 'Miyazaki F' 7172442 YP_002434981.1 CDS DvMF_0556 NC_011769.1 656767 657711 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1801 diguanylate cyclase; diguanylate cyclase 656767..657711 Desulfovibrio vulgaris str. 'Miyazaki F' 7172443 YP_002434982.1 CDS DvMF_0557 NC_011769.1 657736 658554 D KEGG: dde:Dde_1800 flagellar synthesis regulator FleN; flagellar synthesis regulator FleN 657736..658554 Desulfovibrio vulgaris str. 'Miyazaki F' 7172444 YP_002434983.1 CDS DvMF_0558 NC_011769.1 658770 659045 D PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_1799 histone-like DNA-binding protein; histone family protein DNA-binding protein 658770..659045 Desulfovibrio vulgaris str. 'Miyazaki F' 7172445 YP_002434984.1 CDS DvMF_0559 NC_011769.1 659202 659684 D KEGG: aav:Aave_1289 collagen triple helix repeat; hypothetical protein 659202..659684 Desulfovibrio vulgaris str. 'Miyazaki F' 7172446 YP_002434985.1 CDS DvMF_0560 NC_011769.1 659724 660458 D KEGG: ddsi:GD15658-PA; hypothetical protein 659724..660458 Desulfovibrio vulgaris str. 'Miyazaki F' 7172447 YP_002434986.1 CDS dapF NC_011769.1 660511 661359 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 660511..661359 Desulfovibrio vulgaris str. 'Miyazaki F' 7172448 YP_002434987.1 CDS DvMF_0562 NC_011769.1 661492 662370 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 661492..662370 Desulfovibrio vulgaris str. 'Miyazaki F' 7172449 YP_002434988.1 CDS DvMF_0563 NC_011769.1 662862 665171 D TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 662862..665171 Desulfovibrio vulgaris str. 'Miyazaki F' 7172450 YP_002434989.1 CDS DvMF_0564 NC_011769.1 665274 666008 R PFAM: cyclase family protein; KEGG: dde:Dde_1664 cyclase; cyclase family protein complement(665274..666008) Desulfovibrio vulgaris str. 'Miyazaki F' 7172451 YP_002434990.1 CDS aspA NC_011769.1 666005 667570 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(666005..667570) Desulfovibrio vulgaris str. 'Miyazaki F' 7172452 YP_002434991.1 CDS DvMF_0566 NC_011769.1 667820 668419 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cvi:CV_3185 peptidyl-prolyl cis-trans isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(667820..668419) Desulfovibrio vulgaris str. 'Miyazaki F' 7172453 YP_002434992.1 CDS DvMF_0567 NC_011769.1 668868 671456 R KEGG: dde:Dde_1661 ATPase; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; ATPase AAA-2 domain protein; SMART: ATPase AAA; ATP-dependent chaperone ClpB complement(668868..671456) Desulfovibrio vulgaris str. 'Miyazaki F' 7172454 YP_002434993.1 CDS DvMF_0568 NC_011769.1 671653 672003 R KEGG: dde:Dde_1660 DafA protein; hypothetical protein complement(671653..672003) Desulfovibrio vulgaris str. 'Miyazaki F' 7172455 YP_002434994.1 CDS DvMF_0569 NC_011769.1 672070 673026 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dde:Dde_1659 heat shock protein DnaJ-like; chaperone DnaJ domain-containing protein complement(672070..673026) Desulfovibrio vulgaris str. 'Miyazaki F' 7172456 YP_002434995.1 CDS DvMF_0570 NC_011769.1 673401 674552 D PFAM: polysaccharide deacetylase; KEGG: dde:Dde_1658 polysaccharide deacetylase family protein; polysaccharide deacetylase 673401..674552 Desulfovibrio vulgaris str. 'Miyazaki F' 7172457 YP_002434996.1 CDS DvMF_0571 NC_011769.1 675004 676917 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bav:BAV1572 autotransporter; outer membrane autotransporter barrel domain-containing protein 675004..676917 Desulfovibrio vulgaris str. 'Miyazaki F' 7172458 YP_002434997.1 CDS DvMF_0572 NC_011769.1 677145 678170 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dde:Dde_1657 L-threonine aldolase; threonine aldolase complement(677145..678170) Desulfovibrio vulgaris str. 'Miyazaki F' 7172459 YP_002434998.1 CDS DvMF_0573 NC_011769.1 678450 679835 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1656 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(678450..679835) Desulfovibrio vulgaris str. 'Miyazaki F' 7172460 YP_002434999.1 CDS DvMF_0574 NC_011769.1 679886 680512 R KEGG: dde:Dde_1654 hypothetical protein; hypothetical protein complement(679886..680512) Desulfovibrio vulgaris str. 'Miyazaki F' 7172461 YP_002435000.1 CDS DvMF_0575 NC_011769.1 681059 682054 D PFAM: PhoH family protein; KEGG: dde:Dde_1653 PhoH family protein; PhoH family protein 681059..682054 Desulfovibrio vulgaris str. 'Miyazaki F' 7172462 YP_002435001.1 CDS DvMF_0576 NC_011769.1 682080 684662 D KEGG: dde:Dde_1652 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 682080..684662 Desulfovibrio vulgaris str. 'Miyazaki F' 7172463 YP_002435002.1 CDS DvMF_0577 NC_011769.1 684669 685184 D PFAM: protein of unknown function UPF0054; KEGG: dde:Dde_1651 hypothetical protein; hypothetical protein 684669..685184 Desulfovibrio vulgaris str. 'Miyazaki F' 7172464 YP_002435003.1 CDS gatB NC_011769.1 685398 686828 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(685398..686828) Desulfovibrio vulgaris str. 'Miyazaki F' 7172465 YP_002435004.1 CDS DvMF_0579 NC_011769.1 687048 687716 R KEGG: dde:Dde_2616 hypothetical protein; hypothetical protein complement(687048..687716) Desulfovibrio vulgaris str. 'Miyazaki F' 7172466 YP_002435005.1 CDS DvMF_0580 NC_011769.1 687737 689482 R KEGG: dde:Dde_2617 hypothetical protein; hypothetical protein complement(687737..689482) Desulfovibrio vulgaris str. 'Miyazaki F' 7172467 YP_002435006.1 CDS DvMF_0581 NC_011769.1 689631 690482 R PFAM: ATP-NAD/AcoX kinase; KEGG: dde:Dde_2618 NAD(+) kinase; ATP-NAD/AcoX kinase complement(689631..690482) Desulfovibrio vulgaris str. 'Miyazaki F' 7172468 YP_002435007.1 CDS DvMF_0582 NC_011769.1 690727 691353 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 690727..691353 Desulfovibrio vulgaris str. 'Miyazaki F' 7172469 YP_002435008.1 CDS DvMF_0583 NC_011769.1 691492 691728 D TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: dde:Dde_2620 hypothetical protein; FmdB family regulatory protein 691492..691728 Desulfovibrio vulgaris str. 'Miyazaki F' 7172470 YP_002435009.1 CDS hemC NC_011769.1 691772 692725 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 691772..692725 Desulfovibrio vulgaris str. 'Miyazaki F' 7172471 YP_002435010.1 CDS DvMF_0585 NC_011769.1 692854 694632 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lip:LIC103 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(692854..694632) Desulfovibrio vulgaris str. 'Miyazaki F' 7172472 YP_002435011.1 CDS DvMF_0586 NC_011769.1 694753 695766 R PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_0908 XRE family transcriptional regulator; XRE family transcriptional regulator complement(694753..695766) Desulfovibrio vulgaris str. 'Miyazaki F' 7172473 YP_002435012.1 CDS DvMF_0587 NC_011769.1 696310 697458 R KEGG: dde:Dde_2623 hypothetical protein; hypothetical protein complement(696310..697458) Desulfovibrio vulgaris str. 'Miyazaki F' 7172474 YP_002435013.1 CDS DvMF_0588 NC_011769.1 697455 698219 R KEGG: dde:Dde_2624 hypothetical protein; hypothetical protein complement(697455..698219) Desulfovibrio vulgaris str. 'Miyazaki F' 7172475 YP_002435014.1 CDS DvMF_0589 NC_011769.1 698216 699343 R KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(698216..699343) Desulfovibrio vulgaris str. 'Miyazaki F' 7172476 YP_002435015.1 CDS DvMF_0590 NC_011769.1 699737 702172 D KEGG: dde:Dde_2626 ATP-dependent protease; ATP-dependent protease 699737..702172 Desulfovibrio vulgaris str. 'Miyazaki F' 7172477 YP_002435016.1 CDS DvMF_0591 NC_011769.1 702486 702674 R hypothetical protein complement(702486..702674) Desulfovibrio vulgaris str. 'Miyazaki F' 7172478 YP_002435017.1 CDS DvMF_0592 NC_011769.1 702914 704065 D PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_1647 major facilitator superfamily protein; major facilitator superfamily protein 702914..704065 Desulfovibrio vulgaris str. 'Miyazaki F' 7172479 YP_002435018.1 CDS DvMF_0593 NC_011769.1 704411 705748 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4835 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 704411..705748 Desulfovibrio vulgaris str. 'Miyazaki F' 7172480 YP_002435019.1 CDS DvMF_0594 NC_011769.1 705892 706416 R TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dde:Dde_1646 peptidase C56, PfpI; PfpI family intracellular protease complement(705892..706416) Desulfovibrio vulgaris str. 'Miyazaki F' 7172481 YP_002435020.1 CDS DvMF_0595 NC_011769.1 706786 707580 R TIGRFAM: phosphonate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3724 phosphonate ABC transporter permease; phosphonate ABC transporter inner membrane protein complement(706786..707580) Desulfovibrio vulgaris str. 'Miyazaki F' 7172482 YP_002435021.1 CDS DvMF_0596 NC_011769.1 707577 708365 R TIGRFAM: phosphonate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3725 phosphonate ABC transporter inner membrane protein; phosphonate ABC transporter inner membrane protein complement(707577..708365) Desulfovibrio vulgaris str. 'Miyazaki F' 7172483 YP_002435022.1 CDS DvMF_0597 NC_011769.1 708362 709174 R KEGG: mrd:Mrad2831_4575 phosphonate ABC transporter ATPase; TIGRFAM: phosphonate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA; phosphonate ABC transporter ATPase complement(708362..709174) Desulfovibrio vulgaris str. 'Miyazaki F' 7172484 YP_002435023.1 CDS DvMF_0598 NC_011769.1 709435 710490 R TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: dde:Dde_3730 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(709435..710490) Desulfovibrio vulgaris str. 'Miyazaki F' 7172485 YP_002435024.1 CDS DvMF_0599 NC_011769.1 710773 711540 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: haloacid dehalogenase; KEGG: dde:Dde_3732 HAD family hydrolase; HAD-superfamily hydrolase complement(710773..711540) Desulfovibrio vulgaris str. 'Miyazaki F' 7172486 YP_002435025.1 CDS DvMF_0600 NC_011769.1 712037 714088 D TIGRFAM: degV family protein; PFAM: DegV family protein; Dak phosphatase; KEGG: dde:Dde_1644 DegV family protein; degV family protein 712037..714088 Desulfovibrio vulgaris str. 'Miyazaki F' 7172487 YP_002435026.1 CDS DvMF_0601 NC_011769.1 714475 714708 D KEGG: dde:Dde_1642 hypothetical protein; hypothetical protein 714475..714708 Desulfovibrio vulgaris str. 'Miyazaki F' 7172488 YP_002435027.1 CDS DvMF_0602 NC_011769.1 715226 715552 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_02497 ferridoxin; 4Fe-4S ferredoxin 715226..715552 Desulfovibrio vulgaris str. 'Miyazaki F' 7172489 YP_002435028.1 CDS DvMF_0603 NC_011769.1 715557 716705 D PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dde:Dde_1639 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha 715557..716705 Desulfovibrio vulgaris str. 'Miyazaki F' 7172490 YP_002435029.1 CDS DvMF_0604 NC_011769.1 716713 717546 D catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 716713..717546 Desulfovibrio vulgaris str. 'Miyazaki F' 7172491 YP_002435030.1 CDS DvMF_0605 NC_011769.1 717543 718166 D PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_1637 2-oxoglutarate ferredoxin oxidoreductase, subunit gamma; pyruvate ferredoxin/flavodoxin oxidoreductase 717543..718166 Desulfovibrio vulgaris str. 'Miyazaki F' 7172492 YP_002435031.1 CDS DvMF_0606 NC_011769.1 718381 718677 D KEGG: dde:Dde_1636 hypothetical protein; hypothetical protein 718381..718677 Desulfovibrio vulgaris str. 'Miyazaki F' 7172493 YP_002435032.1 CDS DvMF_0607 NC_011769.1 718921 719877 R PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_3727 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(718921..719877) Desulfovibrio vulgaris str. 'Miyazaki F' 7172494 YP_002435033.1 CDS DvMF_0608 NC_011769.1 720022 721605 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: dde:Dde_1635 Fis family transcriptional regulator; Fis family transcriptional regulator complement(720022..721605) Desulfovibrio vulgaris str. 'Miyazaki F' 7172495 YP_002435034.1 CDS DvMF_0609 NC_011769.1 721610 722215 R PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sfu:Sfum_4076 pyruvate ferredoxin/flavodoxin oxidoreductase; indolepyruvate ferredoxin oxidoreductase complement(721610..722215) Desulfovibrio vulgaris str. 'Miyazaki F' 7172496 YP_002435035.1 CDS DvMF_0610 NC_011769.1 722212 724101 R KEGG: sfu:Sfum_4075 thiamine pyrophosphate enzyme domain protein TPP-binding; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; indolepyruvate ferredoxin oxidoreductase subunit alpha complement(722212..724101) Desulfovibrio vulgaris str. 'Miyazaki F' 7172497 YP_002435036.1 CDS DvMF_0611 NC_011769.1 724106 724801 R KEGG: dde:Dde_1634 hypothetical protein; hypothetical protein complement(724106..724801) Desulfovibrio vulgaris str. 'Miyazaki F' 7172498 YP_002435037.1 CDS proA NC_011769.1 725285 726595 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 725285..726595 Desulfovibrio vulgaris str. 'Miyazaki F' 7172499 YP_002435038.1 CDS DvMF_0613 NC_011769.1 726751 727605 D KEGG: dde:Dde_1632 nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 726751..727605 Desulfovibrio vulgaris str. 'Miyazaki F' 7172500 YP_002435039.1 CDS DvMF_0614 NC_011769.1 727596 728411 D SMART: hypothetical protein; KEGG: dde:Dde_1630 hypothetical protein; hypothetical protein 727596..728411 Desulfovibrio vulgaris str. 'Miyazaki F' 7172501 YP_002435040.1 CDS DvMF_0615 NC_011769.1 728607 729773 R PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1629 heptosyltransferase family protein; glycosyl transferase family protein complement(728607..729773) Desulfovibrio vulgaris str. 'Miyazaki F' 7172502 YP_002435041.1 CDS DvMF_0616 NC_011769.1 730088 732814 D KEGG: dde:Dde_1165 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Cache type 2 domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 730088..732814 Desulfovibrio vulgaris str. 'Miyazaki F' 7172503 YP_002435042.1 CDS DvMF_0617 NC_011769.1 733173 735824 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: dde:Dde_1628 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 733173..735824 Desulfovibrio vulgaris str. 'Miyazaki F' 7172504 YP_002435043.1 CDS DvMF_0618 NC_011769.1 736060 736821 R KEGG: ddse:GM16758-PA; hypothetical protein complement(736060..736821) Desulfovibrio vulgaris str. 'Miyazaki F' 7172505 YP_002435044.1 CDS DvMF_0619 NC_011769.1 738048 740432 R PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dol:Dole_0871 chemotaxis protein CheA; chemotaxis protein CheA complement(738048..740432) Desulfovibrio vulgaris str. 'Miyazaki F' 7172506 YP_002435045.1 CDS DvMF_0620 NC_011769.1 740429 741067 R PFAM: CheW domain protein; KEGG: gur:Gura_2986 CheW protein; chemotaxis protein CheW complement(740429..741067) Desulfovibrio vulgaris str. 'Miyazaki F' 7172507 YP_002435046.1 CDS DvMF_0621 NC_011769.1 741362 743545 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_1627 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(741362..743545) Desulfovibrio vulgaris str. 'Miyazaki F' 7172508 YP_002435047.1 CDS DvMF_0622 NC_011769.1 744174 744716 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0235 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator complement(744174..744716) Desulfovibrio vulgaris str. 'Miyazaki F' 7172509 YP_002435048.1 CDS DvMF_0623 NC_011769.1 745468 746037 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0224 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 745468..746037 Desulfovibrio vulgaris str. 'Miyazaki F' 7172510 YP_002435049.1 CDS DvMF_0624 NC_011769.1 746056 747297 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 746056..747297 Desulfovibrio vulgaris str. 'Miyazaki F' 7172511 YP_002435050.1 CDS DvMF_0625 NC_011769.1 747311 748012 D PFAM: protein of unknown function DUF1641; KEGG: dde:Dde_0222 hypothetical protein; hypothetical protein 747311..748012 Desulfovibrio vulgaris str. 'Miyazaki F' 7172512 YP_002435051.1 CDS DvMF_0626 NC_011769.1 748090 748476 D PFAM: response regulator receiver; KEGG: dde:Dde_0221 response regulator receiver domain-containing protein; response regulator receiver protein 748090..748476 Desulfovibrio vulgaris str. 'Miyazaki F' 7172513 YP_002435052.1 CDS DvMF_0627 NC_011769.1 748941 749627 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: dde:Dde_0220 Sel1 repeat-containing protein; Sel1 domain-containing protein repeat-containing protein complement(748941..749627) Desulfovibrio vulgaris str. 'Miyazaki F' 7172514 YP_002435053.1 CDS DvMF_0628 NC_011769.1 750226 751401 R PFAM: protein of unknown function DUF214; KEGG: gsu:GSU1164 ABC transporter permease; hypothetical protein complement(750226..751401) Desulfovibrio vulgaris str. 'Miyazaki F' 7172515 YP_002435054.1 CDS DvMF_0629 NC_011769.1 751411 752562 R PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_2406 protein of unknown function DUF214; hypothetical protein complement(751411..752562) Desulfovibrio vulgaris str. 'Miyazaki F' 7172516 YP_002435055.1 CDS DvMF_0630 NC_011769.1 752549 753355 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gsu:GSU1162 ABC transporter ATP-binding protein; ABC transporter complement(752549..753355) Desulfovibrio vulgaris str. 'Miyazaki F' 7172517 YP_002435056.1 CDS DvMF_0631 NC_011769.1 753352 754650 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gsu:GSU1161 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit complement(753352..754650) Desulfovibrio vulgaris str. 'Miyazaki F' 7172518 YP_002435057.1 CDS DvMF_0632 NC_011769.1 755097 755330 D hypothetical protein 755097..755330 Desulfovibrio vulgaris str. 'Miyazaki F' 7172519 YP_002435058.1 CDS DvMF_0633 NC_011769.1 755477 756460 R PFAM: phosphoglycerate mutase; KEGG: pca:Pcar_0229 fructose-2,6-bisphosphatase; phosphoglycerate mutase complement(755477..756460) Desulfovibrio vulgaris str. 'Miyazaki F' 7172520 YP_002435059.1 CDS DvMF_0634 NC_011769.1 756457 758001 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gur:Gura_1006 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(756457..758001) Desulfovibrio vulgaris str. 'Miyazaki F' 7172521 YP_002435060.1 CDS DvMF_0635 NC_011769.1 758152 759240 R PFAM: protein of unknown function DUF182; KEGG: pth:PTH_0686 xanthine and CO dehydrogenases maturation factor; hypothetical protein complement(758152..759240) Desulfovibrio vulgaris str. 'Miyazaki F' 7172522 YP_002435061.1 CDS DvMF_0636 NC_011769.1 759237 760457 R KEGG: gme:Gmet_1800 coenzyme F390 synthetase-like; coenzyme F390 synthetase-like protein complement(759237..760457) Desulfovibrio vulgaris str. 'Miyazaki F' 7172523 YP_002435062.1 CDS DvMF_0637 NC_011769.1 760454 762220 R PFAM: radical SAM protein; KEGG: dde:Dde_3544 elongator protein 3/MiaB/NifB; radical SAM protein complement(760454..762220) Desulfovibrio vulgaris str. 'Miyazaki F' 7172524 YP_002435063.1 CDS DvMF_0638 NC_011769.1 762226 762693 R KEGG: dps:DP0266 hypothetical protein; hypothetical protein complement(762226..762693) Desulfovibrio vulgaris str. 'Miyazaki F' 7172525 YP_002435064.1 CDS DvMF_0639 NC_011769.1 762690 763613 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: gur:Gura_1001 methyltransferase type 11; methyltransferase type 11 complement(762690..763613) Desulfovibrio vulgaris str. 'Miyazaki F' 7172526 YP_002435065.1 CDS DvMF_0640 NC_011769.1 763610 766318 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: gur:Gura_0999 4Fe-4S ferredoxin iron-sulfur binding domain protein; hypothetical protein complement(763610..766318) Desulfovibrio vulgaris str. 'Miyazaki F' 7172527 YP_002435066.1 CDS DvMF_0641 NC_011769.1 766428 769145 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: dde:Dde_3539 aldehyde dehydrogenase, molybdenum-binding subunit apoprotein; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(766428..769145) Desulfovibrio vulgaris str. 'Miyazaki F' 7172528 YP_002435067.1 CDS DvMF_0642 NC_011769.1 769283 770326 R PFAM: molybdopterin binding domain; KEGG: dde:Dde_3538 molybdenum cofactor cytidylyltransferase; molybdopterin binding domain-containing protein complement(769283..770326) Desulfovibrio vulgaris str. 'Miyazaki F' 7172529 YP_002435068.1 CDS DvMF_0643 NC_011769.1 770931 773969 D Contains selenocysteine; TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_3510 formate dehydrogenase, subunit alpha; formate dehydrogenase subunit alpha 770931..773969 Desulfovibrio vulgaris str. 'Miyazaki F' 7172530 YP_002435069.1 CDS DvMF_0644 NC_011769.1 773980 774627 D KEGG: sfu:Sfum_0037 formate dehydrogenase subunit beta; formate dehydrogenase subunit beta 773980..774627 Desulfovibrio vulgaris str. 'Miyazaki F' 7172531 YP_002435070.1 CDS DvMF_0645 NC_011769.1 774920 775933 D PFAM: formate dehydrogenase accessory protein; KEGG: sfu:Sfum_0038 protein involved in formate dehydrogenase formation; formate dehydrogenase accessory protein 774920..775933 Desulfovibrio vulgaris str. 'Miyazaki F' 7172532 YP_002435071.1 CDS DvMF_0646 NC_011769.1 776678 779719 D KEGG: dde:Dde_3513 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, subunit alpha; Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; formate dehydrogenase subunit alpha 776678..779719 Desulfovibrio vulgaris str. 'Miyazaki F' 7172533 YP_002435072.1 CDS DvMF_0647 NC_011769.1 779773 780432 D KEGG: dde:Dde_3514 formate dehydrogenase subunit beta; formate dehydrogenase subunit beta 779773..780432 Desulfovibrio vulgaris str. 'Miyazaki F' 7172534 YP_002435073.1 CDS DvMF_0648 NC_011769.1 780508 781473 D PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_3515 formate dehydrogenase formation protein FdhE; formate dehydrogenase accessory protein 780508..781473 Desulfovibrio vulgaris str. 'Miyazaki F' 7172535 YP_002435074.1 CDS DvMF_0649 NC_011769.1 781488 781919 D PFAM: cytochrome C class III; KEGG: dde:Dde_0653 high-molecular-weight cytochrome C; cytochrome C class III 781488..781919 Desulfovibrio vulgaris str. 'Miyazaki F' 7172536 YP_002435075.1 CDS DvMF_0650 NC_011769.1 782404 782814 D PFAM: regulatory protein LysR; KEGG: sfu:Sfum_0033 ModE family transcriptional regulator; ModE family transcriptional regulator 782404..782814 Desulfovibrio vulgaris str. 'Miyazaki F' 7172537 YP_002435076.1 CDS DvMF_0651 NC_011769.1 783302 784576 D KEGG: dde:Dde_2862 hypothetical protein; hypothetical protein 783302..784576 Desulfovibrio vulgaris str. 'Miyazaki F' 7172538 YP_002435077.1 CDS DvMF_0652 NC_011769.1 784731 785843 R PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: hmo:HM1_2344 agmatine deiminase; Agmatine deiminase complement(784731..785843) Desulfovibrio vulgaris str. 'Miyazaki F' 7172539 YP_002435078.1 CDS DvMF_0653 NC_011769.1 786552 787493 D TIGRFAM: N-carbamoylputrescine amidase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ypb:YPTS_3343 N-carbamoylputrescine amidase; N-carbamoylputrescine amidase 786552..787493 Desulfovibrio vulgaris str. 'Miyazaki F' 7172540 YP_002435079.1 CDS DvMF_0654 NC_011769.1 787496 789118 D PFAM: amidohydrolase; KEGG: bpe:BP2617 hypothetical protein; amidohydrolase 787496..789118 Desulfovibrio vulgaris str. 'Miyazaki F' 7172541 YP_002435080.1 CDS DvMF_0655 NC_011769.1 789721 790773 D PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: lip:LI0076 sugar ABC transporter ATP-binding protein; ABC transporter 789721..790773 Desulfovibrio vulgaris str. 'Miyazaki F' 7172542 YP_002435081.1 CDS DvMF_0656 NC_011769.1 790871 792166 D PFAM: extracellular solute-binding protein family 1; KEGG: lip:LI0077 probable extracellular solute-binding protein; extracellular solute-binding protein 790871..792166 Desulfovibrio vulgaris str. 'Miyazaki F' 7172543 YP_002435082.1 CDS DvMF_0657 NC_011769.1 792406 793299 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lip:LI0078 inner membrane component of binding-protein-dependent transporter; binding-protein-dependent transporters inner membrane component 792406..793299 Desulfovibrio vulgaris str. 'Miyazaki F' 7172544 YP_002435083.1 CDS DvMF_0658 NC_011769.1 793296 794129 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ajs:Ajs_3304 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 793296..794129 Desulfovibrio vulgaris str. 'Miyazaki F' 7172545 YP_002435084.1 CDS DvMF_0659 NC_011769.1 794202 795071 D KEGG: mka:MK0390 HD-superfamily hydrolase; hypothetical protein 794202..795071 Desulfovibrio vulgaris str. 'Miyazaki F' 7172546 YP_002435085.1 CDS DvMF_0660 NC_011769.1 795804 796769 R PFAM: patatin; KEGG: dde:Dde_0819 alpha-beta hydrolase superfamily esterase; patatin complement(795804..796769) Desulfovibrio vulgaris str. 'Miyazaki F' 7172547 YP_002435086.1 CDS DvMF_0661 NC_011769.1 796854 798914 R TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0849 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(796854..798914) Desulfovibrio vulgaris str. 'Miyazaki F' 7172548 YP_002435087.1 CDS DvMF_0662 NC_011769.1 799001 800278 R KEGG: neu:NE0796 capsular polysaccharide biosynthesis protein CapK; Coenzyme F390 synthetase-like protein complement(799001..800278) Desulfovibrio vulgaris str. 'Miyazaki F' 7172549 YP_002435088.1 CDS DvMF_0663 NC_011769.1 800340 801338 R KEGG: rci:RCIX258 hypothetical protein; hypothetical protein complement(800340..801338) Desulfovibrio vulgaris str. 'Miyazaki F' 7172550 YP_002435089.1 CDS DvMF_0664 NC_011769.1 801335 802759 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mxa:MXAN_2358 decarboxylase, pyridoxal-dependent; Orn/DAP/Arg decarboxylase 2 complement(801335..802759) Desulfovibrio vulgaris str. 'Miyazaki F' 7172551 YP_002435090.1 CDS DvMF_0665 NC_011769.1 802777 803937 R PFAM: protein of unknown function DUF201; KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein; hypothetical protein complement(802777..803937) Desulfovibrio vulgaris str. 'Miyazaki F' 7172552 YP_002435091.1 CDS DvMF_0666 NC_011769.1 803934 805100 R KEGG: reh:H16_B0786 hypothetical protein; hypothetical protein complement(803934..805100) Desulfovibrio vulgaris str. 'Miyazaki F' 7172553 YP_002435092.1 CDS DvMF_0667 NC_011769.1 805097 806107 R KEGG: mlo:mlr0961 glycosyltransferase; hypothetical protein complement(805097..806107) Desulfovibrio vulgaris str. 'Miyazaki F' 7172554 YP_002435093.1 CDS DvMF_0668 NC_011769.1 806163 807344 R KEGG: pzu:PHZ_p0065 biotin carboxylase-like protein; ATP-grasp protein-like protein complement(806163..807344) Desulfovibrio vulgaris str. 'Miyazaki F' 7172555 YP_002435094.1 CDS DvMF_0669 NC_011769.1 807347 809689 R KEGG: sus:acid_4187 hypothetical protein; hypothetical protein complement(807347..809689) Desulfovibrio vulgaris str. 'Miyazaki F' 7172556 YP_002435095.1 CDS DvMF_0670 NC_011769.1 809764 811125 R KEGG: dde:Dde_0850 two component Fis family transcriptional regulator; TIGRFAM: PEP-CTERM system response regulator; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; Fis family transcriptional regulator complement(809764..811125) Desulfovibrio vulgaris str. 'Miyazaki F' 7172557 YP_002435096.1 CDS DvMF_0671 NC_011769.1 811100 811831 R TIGRFAM: EpsI family protein; KEGG: dde:Dde_0848 hypothetical protein; EpsI family protein complement(811100..811831) Desulfovibrio vulgaris str. 'Miyazaki F' 7172558 YP_002435097.1 CDS DvMF_0672 NC_011769.1 811838 812692 R TIGRFAM: eight transmembrane protein EpsH; PFAM: Eight transmembrane protein EpsH; KEGG: dde:Dde_0847 hypothetical protein; transmembrane protein EpsH complement(811838..812692) Desulfovibrio vulgaris str. 'Miyazaki F' 7172559 YP_002435098.1 CDS DvMF_0673 NC_011769.1 812757 813872 R PFAM: glycosyl transferase group 1; KEGG: scl:sce8918 glycosyltransferase; group 1 glycosyl transferase complement(812757..813872) Desulfovibrio vulgaris str. 'Miyazaki F' 7172560 YP_002435099.1 CDS DvMF_0674 NC_011769.1 813869 814453 R KEGG: pat:Patl_1177 hypothetical protein; hypothetical protein complement(813869..814453) Desulfovibrio vulgaris str. 'Miyazaki F' 7172561 YP_002435100.1 CDS DvMF_0675 NC_011769.1 814523 815326 R KEGG: scl:sce6563 hypothetical protein; acetyltransferase (isoleucine patch superfamily)-like protein complement(814523..815326) Desulfovibrio vulgaris str. 'Miyazaki F' 7172562 YP_002435101.1 CDS DvMF_0676 NC_011769.1 815337 816461 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0838 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(815337..816461) Desulfovibrio vulgaris str. 'Miyazaki F' 7172563 YP_002435102.1 CDS DvMF_0677 NC_011769.1 816458 817651 R PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3263 glycosyltransferase; group 1 glycosyl transferase complement(816458..817651) Desulfovibrio vulgaris str. 'Miyazaki F' 7172564 YP_002435103.1 CDS DvMF_0678 NC_011769.1 817648 819147 R PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: rru:Rru_A3093 membrane protein involved in the export of O-antigen and teichoic acid-like; polysaccharide biosynthesis protein complement(817648..819147) Desulfovibrio vulgaris str. 'Miyazaki F' 7172565 YP_002435104.1 CDS DvMF_0679 NC_011769.1 819144 820457 R PFAM: O-antigen polymerase; KEGG: gbm:Gbem_1788 O-antigen polymerase; O-antigen polymerase complement(819144..820457) Desulfovibrio vulgaris str. 'Miyazaki F' 7172566 YP_002435105.1 CDS DvMF_0680 NC_011769.1 820521 821840 R KEGG: swi:Swit_2495 hypothetical protein; hypothetical protein complement(820521..821840) Desulfovibrio vulgaris str. 'Miyazaki F' 7172567 YP_002435106.1 CDS DvMF_0681 NC_011769.1 821859 822998 R PFAM: glycosyl transferase family 2; KEGG: maq:Maqu_1655 glycosyl transferase; family 2 glycosyl transferase complement(821859..822998) Desulfovibrio vulgaris str. 'Miyazaki F' 7172568 YP_002435107.1 CDS DvMF_0682 NC_011769.1 822998 824320 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gur:Gura_2343 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(822998..824320) Desulfovibrio vulgaris str. 'Miyazaki F' 7172569 YP_002435108.1 CDS DvMF_0683 NC_011769.1 824317 825363 R TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: ppd:Ppro_2469 hypothetical protein; FemAB-like protein complement(824317..825363) Desulfovibrio vulgaris str. 'Miyazaki F' 7172570 YP_002435109.1 CDS DvMF_0684 NC_011769.1 825356 826207 R TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: ppd:Ppro_2470 polysaccharide deacetylase; polysaccharide deactylase family protein, PEP-CTERM locus subfamily complement(825356..826207) Desulfovibrio vulgaris str. 'Miyazaki F' 7172571 YP_002435110.1 CDS DvMF_0685 NC_011769.1 826262 827584 R TIGRFAM: PEP-CTERM system associated protein; KEGG: dde:Dde_0834 lipoprotein; PEP-CTERM system associated protein complement(826262..827584) Desulfovibrio vulgaris str. 'Miyazaki F' 7172572 YP_002435111.1 CDS DvMF_0686 NC_011769.1 827628 828815 R TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: ATPase AAA; KEGG: dde:Dde_0833 ATPase; secretion ATPase complement(827628..828815) Desulfovibrio vulgaris str. 'Miyazaki F' 7172573 YP_002435112.1 CDS DvMF_0687 NC_011769.1 828827 829708 R TIGRFAM: capsular exopolysaccharide family; exopolysaccharide/PEPCTERM locus tyrosine autokinase; KEGG: dde:Dde_0832 protein-tyrosine kinase; exopolysaccharide/PEPCTERM locus tyrosine autokinase complement(828827..829708) Desulfovibrio vulgaris str. 'Miyazaki F' 7172574 YP_002435113.1 CDS DvMF_0688 NC_011769.1 829719 831161 R TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: dde:Dde_0831 chain length determinant family protein; polysaccharide chain length determinant protein, PEP-CTERM locus subfamily complement(829719..831161) Desulfovibrio vulgaris str. 'Miyazaki F' 7172575 YP_002435114.1 CDS DvMF_0689 NC_011769.1 831222 832028 R TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: dde:Dde_0830 capsular polysaccharide transporter; polysaccharide export protein complement(831222..832028) Desulfovibrio vulgaris str. 'Miyazaki F' 7172576 YP_002435115.1 CDS DvMF_0690 NC_011769.1 832028 833359 R TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: dde:Dde_0829 sugar transferase involved in lipopolysaccharide synthesis-like; sugar transferase complement(832028..833359) Desulfovibrio vulgaris str. 'Miyazaki F' 7172577 YP_002435116.1 CDS DvMF_0691 NC_011769.1 833371 836022 R KEGG: dde:Dde_0828 hypothetical protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: hypothetical protein; hypothetical protein; hypothetical protein; SMART: hypothetical protein; PEP-CTERM system TPR-repeat lipoprotein complement(833371..836022) Desulfovibrio vulgaris str. 'Miyazaki F' 7172578 YP_002435117.1 CDS DvMF_0692 NC_011769.1 837369 840275 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_0822 hypothetical protein; hypothetical protein 837369..840275 Desulfovibrio vulgaris str. 'Miyazaki F' 7172579 YP_002435118.1 CDS DvMF_0693 NC_011769.1 840610 841473 D PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein; hypothetical protein 840610..841473 Desulfovibrio vulgaris str. 'Miyazaki F' 7172580 YP_002435119.1 CDS DvMF_0694 NC_011769.1 841599 842453 D PFAM: protein of unknown function DUF1555; KEGG: dde:Dde_0404 hypothetical protein; hypothetical protein 841599..842453 Desulfovibrio vulgaris str. 'Miyazaki F' 7172581 YP_002435120.1 CDS DvMF_0695 NC_011769.1 842631 843341 R TIGRFAM: CAAX prenyl protease-related protein; PFAM: hypothetical protein; KEGG: dde:Dde_0824 CAAX amino terminal protease family protein; CAAX prenyl protease-related protein complement(842631..843341) Desulfovibrio vulgaris str. 'Miyazaki F' 7172582 YP_002435121.1 CDS DvMF_0696 NC_011769.1 843362 844423 R PFAM: secretion protein HlyD; KEGG: dde:Dde_0825 hypothetical protein; secretion protein HlyD complement(843362..844423) Desulfovibrio vulgaris str. 'Miyazaki F' 7172583 YP_002435122.1 CDS DvMF_0697 NC_011769.1 844420 845118 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0826 ATPase; ABC transporter complement(844420..845118) Desulfovibrio vulgaris str. 'Miyazaki F' 7172584 YP_002435123.1 CDS DvMF_0698 NC_011769.1 845118 846248 R PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter permease; hypothetical protein complement(845118..846248) Desulfovibrio vulgaris str. 'Miyazaki F' 7172585 YP_002435124.1 CDS DvMF_0699 NC_011769.1 846293 847762 R PFAM: sigma-54 factor interaction domain-containing protein; ATPase AAA; SMART: AAA ATPase; KEGG: dde:Dde_0820 two component Fis family transcriptional regulator; Fis family transcriptional regulator complement(846293..847762) Desulfovibrio vulgaris str. 'Miyazaki F' 7172586 YP_002435125.1 CDS DvMF_0700 NC_011769.1 848471 849817 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dol:Dole_2401 two component, sigma54 specific, Fis family transcriptional regulator; Fis family transcriptional regulator complement(848471..849817) Desulfovibrio vulgaris str. 'Miyazaki F' 7172587 YP_002435126.1 CDS DvMF_0701 NC_011769.1 849817 851454 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dol:Dole_2392 histidine kinase; integral membrane sensor signal transduction histidine kinase complement(849817..851454) Desulfovibrio vulgaris str. 'Miyazaki F' 7172588 YP_002435127.1 CDS DvMF_0702 NC_011769.1 851700 852092 D hypothetical protein 851700..852092 Desulfovibrio vulgaris str. 'Miyazaki F' 7172589 YP_002435128.1 CDS DvMF_0703 NC_011769.1 852125 853063 D PFAM: protein of unknown function DUF81; KEGG: pth:PTH_2261 predicted permease; hypothetical protein 852125..853063 Desulfovibrio vulgaris str. 'Miyazaki F' 7172590 YP_002435129.1 CDS DvMF_0704 NC_011769.1 853066 853830 D KEGG: pth:PTH_2262 hypothetical protein; hypothetical protein 853066..853830 Desulfovibrio vulgaris str. 'Miyazaki F' 7172591 YP_002435130.1 CDS DvMF_0705 NC_011769.1 854036 856669 D PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0630 pyruvate, water dikinase; pyruvate, water dikinase 854036..856669 Desulfovibrio vulgaris str. 'Miyazaki F' 7172592 YP_002435131.1 CDS DvMF_0706 NC_011769.1 856638 857039 D PFAM: response regulator receiver; KEGG: dol:Dole_2394 response regulator receiver protein; response regulator receiver protein 856638..857039 Desulfovibrio vulgaris str. 'Miyazaki F' 7172593 YP_002435132.1 CDS DvMF_0707 NC_011769.1 857049 859649 D PFAM: PEP-utilising protein mobile region; KEGG: sfu:Sfum_2666 pyruvate, water dikinase; PEP-utilizing protein mobile subunit 857049..859649 Desulfovibrio vulgaris str. 'Miyazaki F' 7172594 YP_002435133.1 CDS DvMF_0708 NC_011769.1 859652 862423 D PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: sfu:Sfum_2666 pyruvate, water dikinase; pyruvate, water dikinase 859652..862423 Desulfovibrio vulgaris str. 'Miyazaki F' 7172595 YP_002435134.1 CDS DvMF_0709 NC_011769.1 862570 863235 R PFAM: metallophosphoesterase; KEGG: dol:Dole_0345 metallophosphoesterase; metallophosphoesterase complement(862570..863235) Desulfovibrio vulgaris str. 'Miyazaki F' 7172596 YP_002435135.1 CDS DvMF_0710 NC_011769.1 864144 864860 R PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: lip:LI0836 predicted transcriptional regulator; phage repressor complement(864144..864860) Desulfovibrio vulgaris str. 'Miyazaki F' 7172597 YP_002435136.1 CDS DvMF_0711 NC_011769.1 865149 865607 D KEGG: dde:Dde_3347 hypothetical protein; hypothetical protein 865149..865607 Desulfovibrio vulgaris str. 'Miyazaki F' 7172598 YP_002435137.1 CDS DvMF_0712 NC_011769.1 865582 865824 D KEGG: dde:Dde_3348 hypothetical protein; hypothetical protein 865582..865824 Desulfovibrio vulgaris str. 'Miyazaki F' 7172599 YP_002435138.1 CDS DvMF_0713 NC_011769.1 865833 868031 D PFAM: transposase-like Mu; KEGG: bvi:Bcep1808_1328 MuA-transposase/repressor protein CI, DNA-binding; transposase-like Mu 865833..868031 Desulfovibrio vulgaris str. 'Miyazaki F' 7172600 YP_002435139.1 CDS DvMF_0714 NC_011769.1 868040 868822 D KEGG: aav:Aave_4120 bacteriophage DNA transposition B protein; bacteriophage DNA transposition B protein 868040..868822 Desulfovibrio vulgaris str. 'Miyazaki F' 7172601 YP_002435140.1 CDS DvMF_0715 NC_011769.1 868823 869416 D KEGG: pol:Bpro_3754 hypothetical protein; hypothetical protein 868823..869416 Desulfovibrio vulgaris str. 'Miyazaki F' 7172602 YP_002435141.1 CDS DvMF_0716 NC_011769.1 869406 869735 D KEGG: bvi:Bcep1808_1324 LacI family transcriptional regulator; LacI family transcriptional regulator 869406..869735 Desulfovibrio vulgaris str. 'Miyazaki F' 7172603 YP_002435142.1 CDS DvMF_0717 NC_011769.1 869737 870231 D hypothetical protein 869737..870231 Desulfovibrio vulgaris str. 'Miyazaki F' 7172604 YP_002435143.1 CDS DvMF_0718 NC_011769.1 870322 870774 D KEGG: dde:Dde_3357 hypothetical protein; hypothetical protein 870322..870774 Desulfovibrio vulgaris str. 'Miyazaki F' 7172605 YP_002435144.1 CDS DvMF_0719 NC_011769.1 870777 871001 D hypothetical protein 870777..871001 Desulfovibrio vulgaris str. 'Miyazaki F' 7172606 YP_002435145.1 CDS DvMF_0720 NC_011769.1 870988 871428 D PFAM: protein of unknown function DUF1018; KEGG: ypy:YPK_0202 protein of unknown function DUF1018; hypothetical protein 870988..871428 Desulfovibrio vulgaris str. 'Miyazaki F' 7172607 YP_002435146.1 CDS DvMF_0721 NC_011769.1 871425 871895 D PFAM: Mor transcription activator domain protein; KEGG: cvi:CV_0355 hypothetical protein; Mor transcription activator domain-containing protein 871425..871895 Desulfovibrio vulgaris str. 'Miyazaki F' 7172608 YP_002435147.1 CDS DvMF_0722 NC_011769.1 872838 873209 D KEGG: lip:LIC084 phage-related membrane protein; phage-related membrane protein 872838..873209 Desulfovibrio vulgaris str. 'Miyazaki F' 7172609 YP_002435148.1 CDS DvMF_0723 NC_011769.1 873212 874000 D PFAM: lytic transglycosylase catalytic; KEGG: lip:LIC036 lytic murein transglycosylase precursor; lytic transglycosylase 873212..874000 Desulfovibrio vulgaris str. 'Miyazaki F' 7172610 YP_002435149.1 CDS DvMF_0724 NC_011769.1 874000 874695 D KEGG: eca:ECA2778 hypothetical protein; hypothetical protein 874000..874695 Desulfovibrio vulgaris str. 'Miyazaki F' 7172611 YP_002435150.1 CDS DvMF_0725 NC_011769.1 874692 874958 D hypothetical protein 874692..874958 Desulfovibrio vulgaris str. 'Miyazaki F' 7172612 YP_002435151.1 CDS DvMF_0726 NC_011769.1 874972 875187 D KEGG: ypy:YPK_0195 hypothetical protein; hypothetical protein 874972..875187 Desulfovibrio vulgaris str. 'Miyazaki F' 7172613 YP_002435152.1 CDS DvMF_0727 NC_011769.1 875189 875695 D PFAM: protein of unknown function DUF1804; KEGG: ypy:YPK_0194 protein of unknown function DUF1804; hypothetical protein 875189..875695 Desulfovibrio vulgaris str. 'Miyazaki F' 7172614 YP_002435153.1 CDS DvMF_0728 NC_011769.1 875692 877368 D TIGRFAM: phage uncharacterized protein; KEGG: nma:NMA1852 hypothetical protein; phage protein 875692..877368 Desulfovibrio vulgaris str. 'Miyazaki F' 7172615 YP_002435154.1 CDS DvMF_0729 NC_011769.1 877343 879001 D PFAM: protein of unknown function DUF935; KEGG: lip:LI0833 hypothetical protein NMA1314; hypothetical protein 877343..879001 Desulfovibrio vulgaris str. 'Miyazaki F' 7172616 YP_002435155.1 CDS DvMF_0730 NC_011769.1 879276 880529 D TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; KEGG: cvi:CV_2138 hypothetical protein; phage head morphogenesis protein 879276..880529 Desulfovibrio vulgaris str. 'Miyazaki F' 7172617 YP_002435156.1 CDS DvMF_0731 NC_011769.1 880672 881154 D TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein; phage virion morphogenesis protein 880672..881154 Desulfovibrio vulgaris str. 'Miyazaki F' 7172618 YP_002435157.1 CDS DvMF_0732 NC_011769.1 881296 881886 D KEGG: slo:Shew_2180 hypothetical protein; hypothetical protein 881296..881886 Desulfovibrio vulgaris str. 'Miyazaki F' 7172619 YP_002435158.1 CDS DvMF_0733 NC_011769.1 881883 882815 D KEGG: slo:Shew_2179 hypothetical protein; hypothetical protein 881883..882815 Desulfovibrio vulgaris str. 'Miyazaki F' 7172620 YP_002435159.1 CDS DvMF_0734 NC_011769.1 882852 884036 D KEGG: bvi:Bcep1808_1303 hypothetical protein; hypothetical protein 882852..884036 Desulfovibrio vulgaris str. 'Miyazaki F' 7172621 YP_002435160.1 CDS DvMF_0735 NC_011769.1 884040 884969 D KEGG: lip:LIC067 hypothetical protein; hypothetical protein 884040..884969 Desulfovibrio vulgaris str. 'Miyazaki F' 7172622 YP_002435161.1 CDS DvMF_0736 NC_011769.1 884981 885397 D KEGG: cel:ZK84.1 ZK84.1; hypothetical protein 884981..885397 Desulfovibrio vulgaris str. 'Miyazaki F' 7172623 YP_002435162.1 CDS DvMF_0737 NC_011769.1 885398 885817 D PFAM: protein of unknown function DUF1320; KEGG: bvi:Bcep1808_1299 hypothetical protein; hypothetical protein 885398..885817 Desulfovibrio vulgaris str. 'Miyazaki F' 7172624 YP_002435163.1 CDS DvMF_0738 NC_011769.1 885814 886434 D PFAM: Domain of unknown function DUF1834; KEGG: lip:LIC069 hypothetical protein; hypothetical protein 885814..886434 Desulfovibrio vulgaris str. 'Miyazaki F' 7172625 YP_002435164.1 CDS DvMF_0739 NC_011769.1 886436 886639 D KEGG: hsm:HSM_0675 hypothetical protein; hypothetical protein 886436..886639 Desulfovibrio vulgaris str. 'Miyazaki F' 7172626 YP_002435165.1 CDS DvMF_0740 NC_011769.1 886626 888047 D PFAM: Mu tail sheath family protein; KEGG: bbr:BB3621 phage tail sheath protein; Mu tail sheath family protein 886626..888047 Desulfovibrio vulgaris str. 'Miyazaki F' 7172627 YP_002435166.1 CDS DvMF_0741 NC_011769.1 888235 888609 D KEGG: bbr:BB3620 hypothetical protein; hypothetical protein 888235..888609 Desulfovibrio vulgaris str. 'Miyazaki F' 7172628 YP_002435167.1 CDS DvMF_0742 NC_011769.1 888613 888942 D KEGG: lip:LIC072 NA; hypothetical protein 888613..888942 Desulfovibrio vulgaris str. 'Miyazaki F' 7172629 YP_002435168.1 CDS DvMF_0743 NC_011769.1 889104 891044 D KEGG: bbr:BB3617 hypothetical protein; hypothetical protein 889104..891044 Desulfovibrio vulgaris str. 'Miyazaki F' 7172630 YP_002435169.1 CDS DvMF_0744 NC_011769.1 891065 892405 D PFAM: DNA circulation family protein; KEGG: bbr:BB3616 hypothetical protein; DNA circulation family protein 891065..892405 Desulfovibrio vulgaris str. 'Miyazaki F' 7172631 YP_002435170.1 CDS DvMF_0745 NC_011769.1 892395 893495 D KEGG: bbr:BB3615 phage tail protein; phage tail protein 892395..893495 Desulfovibrio vulgaris str. 'Miyazaki F' 7172632 YP_002435171.1 CDS DvMF_0746 NC_011769.1 893653 894279 D TIGRFAM: phage baseplate assembly protein V; PFAM: Mu Gp45 domain protein; KEGG: cvi:CV_0345 bacteriophage base plate protein; phage baseplate assembly protein V 893653..894279 Desulfovibrio vulgaris str. 'Miyazaki F' 7172633 YP_002435172.1 CDS DvMF_0747 NC_011769.1 894257 895699 R KEGG: hmo:HM1_0929 hypothetical protein; hypothetical protein complement(894257..895699) Desulfovibrio vulgaris str. 'Miyazaki F' 7172634 YP_002435173.1 CDS DvMF_0748 NC_011769.1 895783 896154 D KEGG: bbr:BB3613 hypothetical protein; hypothetical protein 895783..896154 Desulfovibrio vulgaris str. 'Miyazaki F' 7172635 YP_002435174.1 CDS DvMF_0749 NC_011769.1 896164 897225 D PFAM: Baseplate J family protein; KEGG: bbr:BB3612 phage tail protein; baseplate J family protein 896164..897225 Desulfovibrio vulgaris str. 'Miyazaki F' 7172636 YP_002435175.1 CDS DvMF_0750 NC_011769.1 897222 897791 D KEGG: lip:LIC089 hypothetical protein; hypothetical protein 897222..897791 Desulfovibrio vulgaris str. 'Miyazaki F' 7172637 YP_002435176.1 CDS DvMF_0751 NC_011769.1 897835 899127 D KEGG: lip:LIC026 hypothetical protein; hypothetical protein 897835..899127 Desulfovibrio vulgaris str. 'Miyazaki F' 7172638 YP_002435177.1 CDS DvMF_0752 NC_011769.1 899136 899693 D KEGG: esa:ESA_01046 hypothetical protein; hypothetical protein 899136..899693 Desulfovibrio vulgaris str. 'Miyazaki F' 7172639 YP_002435178.1 CDS DvMF_0753 NC_011769.1 899979 900185 D KEGG: dde:Dde_3395 hypothetical protein; hypothetical protein 899979..900185 Desulfovibrio vulgaris str. 'Miyazaki F' 7172640 YP_002435179.1 CDS DvMF_0754 NC_011769.1 900151 900882 D KEGG: ecs:ECs4998 DNA modification protein; DNA modification protein 900151..900882 Desulfovibrio vulgaris str. 'Miyazaki F' 7172641 YP_002435180.1 CDS DvMF_0755 NC_011769.1 900925 901131 R KEGG: fjo:Fjoh_4853 hypothetical protein; hypothetical protein complement(900925..901131) Desulfovibrio vulgaris str. 'Miyazaki F' 7172642 YP_002435181.1 CDS DvMF_0756 NC_011769.1 901608 902336 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1596 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 901608..902336 Desulfovibrio vulgaris str. 'Miyazaki F' 7172644 YP_002435182.1 CDS DvMF_0757 NC_011769.1 902407 902829 D KEGG: cre:CHLREDRAFT_149841 hypothetical protein Pfam: Extensin_2 PROSITE: ALA_RICH GLN_RICH HIS_RICH PRO_RICH; hypothetical protein 902407..902829 Desulfovibrio vulgaris str. 'Miyazaki F' 7172645 YP_002435183.1 CDS DvMF_0758 NC_011769.1 903125 903877 D PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1595 hypothetical protein; hypothetical protein 903125..903877 Desulfovibrio vulgaris str. 'Miyazaki F' 7172646 YP_002435184.1 CDS DvMF_0759 NC_011769.1 904072 906045 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(904072..906045) Desulfovibrio vulgaris str. 'Miyazaki F' 7172647 YP_002435185.1 CDS DvMF_0760 NC_011769.1 906208 907884 R PFAM: PSP1 domain protein; KEGG: dde:Dde_1593 hypothetical protein; PSP1 domain-containing protein complement(906208..907884) Desulfovibrio vulgaris str. 'Miyazaki F' 7172648 YP_002435186.1 CDS DvMF_0761 NC_011769.1 908194 908751 D TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_1591 hypothetical protein; metal dependent phosphohydrolase 908194..908751 Desulfovibrio vulgaris str. 'Miyazaki F' 7172649 YP_002435187.1 CDS DvMF_0762 NC_011769.1 908926 909921 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1590 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 908926..909921 Desulfovibrio vulgaris str. 'Miyazaki F' 7172650 YP_002435188.1 CDS DvMF_0763 NC_011769.1 910188 911534 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 910188..911534 Desulfovibrio vulgaris str. 'Miyazaki F' 7172651 YP_002435189.1 CDS DvMF_0764 NC_011769.1 911777 915262 D PFAM: UvrD/REP helicase; KEGG: dde:Dde_1588 ATP-dependent DNA helicase UvrD; UvrD/REP helicase 911777..915262 Desulfovibrio vulgaris str. 'Miyazaki F' 7172652 YP_002435190.1 CDS DvMF_0765 NC_011769.1 915259 918561 D KEGG: dde:Dde_1587 hypothetical protein; hypothetical protein 915259..918561 Desulfovibrio vulgaris str. 'Miyazaki F' 7172653 YP_002435191.1 CDS DvMF_0766 NC_011769.1 918900 920021 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: lip:LI1075 dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 918900..920021 Desulfovibrio vulgaris str. 'Miyazaki F' 7172654 YP_002435192.1 CDS DvMF_0767 NC_011769.1 920234 921349 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dde:Dde_1585 site-specific recombinase XerD-like; integrase family protein complement(920234..921349) Desulfovibrio vulgaris str. 'Miyazaki F' 7172655 YP_002435193.1 CDS DvMF_0768 NC_011769.1 921576 922637 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1584 response regulator receiver modulated diguanylate cyclase; response regulator receiver modulated diguanylate cyclase complement(921576..922637) Desulfovibrio vulgaris str. 'Miyazaki F' 7172656 YP_002435194.1 CDS DvMF_0769 NC_011769.1 922774 923613 R TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; KEGG: dde:Dde_1583 signal transduction protein; metal dependent phosphohydrolase complement(922774..923613) Desulfovibrio vulgaris str. 'Miyazaki F' 7172657 YP_002435195.1 CDS DvMF_0770 NC_011769.1 923610 924104 R KEGG: dde:Dde_1582 hypothetical protein; hypothetical protein complement(923610..924104) Desulfovibrio vulgaris str. 'Miyazaki F' 7172658 YP_002435196.1 CDS DvMF_0771 NC_011769.1 924160 925821 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dde:Dde_1581 DNA processing protein DprA; DNA protecting protein DprA complement(924160..925821) Desulfovibrio vulgaris str. 'Miyazaki F' 7172659 YP_002435197.1 CDS DvMF_0772 NC_011769.1 925893 926750 R TIGRFAM: tol-pal system protein YbgF; PFAM: hypothetical protein; KEGG: dde:Dde_1580 TPR domain-containing protein; tol-pal system protein YbgF complement(925893..926750) Desulfovibrio vulgaris str. 'Miyazaki F' 7172660 YP_002435198.1 CDS DvMF_0773 NC_011769.1 927019 927975 D KEGG: dde:Dde_1579 hypothetical protein; hypothetical protein 927019..927975 Desulfovibrio vulgaris str. 'Miyazaki F' 7172661 YP_002435199.1 CDS DvMF_0774 NC_011769.1 928063 931155 R PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dde:Dde_1577 chemotaxis protein CheA; chemotaxis protein CheA complement(928063..931155) Desulfovibrio vulgaris str. 'Miyazaki F' 7172662 YP_002435200.1 CDS DvMF_0775 NC_011769.1 931315 931683 R PFAM: response regulator receiver; KEGG: dde:Dde_1576 response regulator receiver domain-containing protein; response regulator receiver protein complement(931315..931683) Desulfovibrio vulgaris str. 'Miyazaki F' 7172663 YP_002435201.1 CDS DvMF_0776 NC_011769.1 931694 932380 R PFAM: CheW domain protein; KEGG: dde:Dde_1575 CheW protein; chemotaxis protein CheW complement(931694..932380) Desulfovibrio vulgaris str. 'Miyazaki F' 7172664 YP_002435202.1 CDS DvMF_0777 NC_011769.1 932377 933150 R PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_1574 ParA family protein; cobyrinic acid ac-diamide synthase complement(932377..933150) Desulfovibrio vulgaris str. 'Miyazaki F' 7172665 YP_002435203.1 CDS DvMF_0778 NC_011769.1 933286 934164 R PFAM: MCP methyltransferase CheR-type; KEGG: dde:Dde_1573 MCP methyltransferase, CheR-type; chemotaxis protein CheR complement(933286..934164) Desulfovibrio vulgaris str. 'Miyazaki F' 7172666 YP_002435204.1 CDS DvMF_0779 NC_011769.1 934164 936089 R PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: dde:Dde_1572 heat repeat-containing PBS lyase; PBS lyase HEAT domain-containing protein complement(934164..936089) Desulfovibrio vulgaris str. 'Miyazaki F' 7172667 YP_002435205.1 CDS DvMF_0780 NC_011769.1 936260 937402 R PFAM: CheB methylesterase; response regulator receiver; KEGG: dde:Dde_1571 response regulator receiver domain-containing protein; response regulator receiver modulated CheB methylesterase complement(936260..937402) Desulfovibrio vulgaris str. 'Miyazaki F' 7172668 YP_002435206.1 CDS DvMF_0781 NC_011769.1 938303 939085 D PFAM: NLP/P60 protein; KEGG: dsy:DSY2087 hypothetical protein; NLP/P60 protein 938303..939085 Desulfovibrio vulgaris str. 'Miyazaki F' 7172670 YP_002435207.1 CDS DvMF_0782 NC_011769.1 939432 939974 D KEGG: har:HEAR3040 hypothetical protein; hypothetical protein 939432..939974 Desulfovibrio vulgaris str. 'Miyazaki F' 7172671 YP_002435208.1 CDS DvMF_0783 NC_011769.1 940523 941923 D KEGG: tbd:Tbd_1726 L-sorbosone dehydrogenase; glucose/sorbosone dehydrogenase 940523..941923 Desulfovibrio vulgaris str. 'Miyazaki F' 7172672 YP_002435209.1 CDS DvMF_0784 NC_011769.1 942184 942423 D hypothetical protein 942184..942423 Desulfovibrio vulgaris str. 'Miyazaki F' 7172673 YP_002435210.1 CDS DvMF_0785 NC_011769.1 942641 943018 D KEGG: dps:DP2299 hypothetical protein; hypothetical protein 942641..943018 Desulfovibrio vulgaris str. 'Miyazaki F' 7172674 YP_002435211.1 CDS DvMF_0786 NC_011769.1 943451 944338 D PFAM: flagellin domain protein; KEGG: dde:Dde_1570 flagellin; flagellin domain-containing protein 943451..944338 Desulfovibrio vulgaris str. 'Miyazaki F' 7172675 YP_002435212.1 CDS DvMF_0787 NC_011769.1 944569 946737 R KEGG: dde:Dde_1569 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA complement(944569..946737) Desulfovibrio vulgaris str. 'Miyazaki F' 7172676 YP_002435213.1 CDS DvMF_0788 NC_011769.1 947079 948809 R PFAM: extracellular solute-binding protein family 5; KEGG: lip:LI0169 ABC-type dipeptide transporter, periplasmic component; peptide ABC transporter periplasmic protein complement(947079..948809) Desulfovibrio vulgaris str. 'Miyazaki F' 7172677 YP_002435214.1 CDS DvMF_0789 NC_011769.1 949088 952297 D KEGG: dde:Dde_1564 DEAD/DEAH box helicase-like; PFAM: SNF2-related protein; helicase; SMART: DEAD-like helicases; DEAD/DEAH box helicase 949088..952297 Desulfovibrio vulgaris str. 'Miyazaki F' 7172678 YP_002435215.1 CDS DvMF_0790 NC_011769.1 952504 952866 D KEGG: psa:PST_1468 hypothetical protein; hypothetical protein 952504..952866 Desulfovibrio vulgaris str. 'Miyazaki F' 7172679 YP_002435216.1 CDS DvMF_0792 NC_011769.1 955548 956042 R PFAM: CheW domain protein; KEGG: lip:LI1170 chemotaxis signal transduction protein; chemotaxis protein CheW complement(955548..956042) Desulfovibrio vulgaris str. 'Miyazaki F' 7172681 YP_002435217.1 CDS DvMF_0793 NC_011769.1 956092 957840 R PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(956092..957840) Desulfovibrio vulgaris str. 'Miyazaki F' 7172682 YP_002435218.1 CDS DvMF_0794 NC_011769.1 958343 958648 D PFAM: helix-turn-helix domain protein; KEGG: ote:Oter_3445 XRE family transcriptional regulator; XRE family transcriptional regulator 958343..958648 Desulfovibrio vulgaris str. 'Miyazaki F' 7172683 YP_002435219.1 CDS DvMF_0795 NC_011769.1 958941 960131 D PFAM: Calcium-binding EF-hand-containing protein; KEGG: yli:YALI0A06864g hypothetical protein; calcium-binding domain-containing protein 958941..960131 Desulfovibrio vulgaris str. 'Miyazaki F' 7172684 YP_002435220.1 CDS DvMF_0796 NC_011769.1 960431 961423 D PFAM: Calcium-binding EF-hand-containing protein; KEGG: abu:Abu_1162 hypothetical protein; calcium-binding domain-containing protein 960431..961423 Desulfovibrio vulgaris str. 'Miyazaki F' 7172685 YP_002435221.1 CDS DvMF_0797 NC_011769.1 961619 962272 R KEGG: dde:Dde_1558 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(961619..962272) Desulfovibrio vulgaris str. 'Miyazaki F' 7172686 YP_002435222.1 CDS DvMF_0798 NC_011769.1 962598 963218 R catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF complement(962598..963218) Desulfovibrio vulgaris str. 'Miyazaki F' 7172687 YP_002435223.1 CDS thiH NC_011769.1 963303 964547 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(963303..964547) Desulfovibrio vulgaris str. 'Miyazaki F' 7172688 YP_002435224.1 CDS thiG NC_011769.1 964667 965467 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(964667..965467) Desulfovibrio vulgaris str. 'Miyazaki F' 7172689 YP_002435225.1 CDS DvMF_0801 NC_011769.1 965467 965667 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: dde:Dde_1554 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS complement(965467..965667) Desulfovibrio vulgaris str. 'Miyazaki F' 7172690 YP_002435226.1 CDS DvMF_0802 NC_011769.1 966101 967405 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rca:Rcas_0164 ABC transporter; ABC transporter complement(966101..967405) Desulfovibrio vulgaris str. 'Miyazaki F' 7172691 YP_002435227.1 CDS DvMF_0803 NC_011769.1 967409 969139 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rrs:RoseRS_4593 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component complement(967409..969139) Desulfovibrio vulgaris str. 'Miyazaki F' 7172692 YP_002435228.1 CDS DvMF_0804 NC_011769.1 969458 969874 R PFAM: UspA domain protein; KEGG: sfu:Sfum_0624 UspA domain protein; UspA domain-containing protein complement(969458..969874) Desulfovibrio vulgaris str. 'Miyazaki F' 7172693 YP_002435229.1 CDS DvMF_0805 NC_011769.1 970420 971280 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bha:BH0390 hypothetical protein; hypothetical protein complement(970420..971280) Desulfovibrio vulgaris str. 'Miyazaki F' 7172694 YP_002435230.1 CDS DvMF_0806 NC_011769.1 971543 972610 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pau:PA14_21720 AraC family transcriptional regulator; AraC family transcriptional regulator complement(971543..972610) Desulfovibrio vulgaris str. 'Miyazaki F' 7172695 YP_002435231.1 CDS DvMF_0807 NC_011769.1 972878 973951 R PFAM: sodium symporter; KEGG: afw:Anae109_3613 bile acid:sodium symporter; sodium symporter complement(972878..973951) Desulfovibrio vulgaris str. 'Miyazaki F' 7172696 YP_002435232.1 CDS DvMF_0808 NC_011769.1 974173 974967 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: psb:Psyr_0649 helix-turn-helix, AraC type:AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 974173..974967 Desulfovibrio vulgaris str. 'Miyazaki F' 7172697 YP_002435233.1 CDS DvMF_0809 NC_011769.1 975417 976910 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: dde:Dde_0410 glycerol kinase; glycerol kinase complement(975417..976910) Desulfovibrio vulgaris str. 'Miyazaki F' 7172698 YP_002435234.1 CDS DvMF_0810 NC_011769.1 977066 977824 R PFAM: major intrinsic protein; KEGG: dde:Dde_0409 glycerol uptake facilitator protein; major intrinsic protein complement(977066..977824) Desulfovibrio vulgaris str. 'Miyazaki F' 7172699 YP_002435235.1 CDS DvMF_0811 NC_011769.1 978208 979836 R PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_0408 glycerol-3-phosphate dehydrogenase, FAD-dependent; FAD dependent oxidoreductase complement(978208..979836) Desulfovibrio vulgaris str. 'Miyazaki F' 7172700 YP_002435236.1 CDS DvMF_0812 NC_011769.1 979833 980795 R PFAM: sugar-binding domain protein; KEGG: dde:Dde_0407 transcriptional regulator; DeoR family transcriptional regulator complement(979833..980795) Desulfovibrio vulgaris str. 'Miyazaki F' 7172701 YP_002435237.1 CDS DvMF_0813 NC_011769.1 981218 981760 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dde:Dde_1545 single-strand binding protein; single-strand binding protein complement(981218..981760) Desulfovibrio vulgaris str. 'Miyazaki F' 7172702 YP_002435238.1 CDS DvMF_0814 NC_011769.1 982081 982455 R KEGG: dde:Dde_1544 hypothetical protein; hypothetical protein complement(982081..982455) Desulfovibrio vulgaris str. 'Miyazaki F' 7172703 YP_002435239.1 CDS DvMF_0815 NC_011769.1 982459 983109 R KEGG: dde:Dde_1543 hypothetical protein; hypothetical protein complement(982459..983109) Desulfovibrio vulgaris str. 'Miyazaki F' 7172704 YP_002435240.1 CDS DvMF_0816 NC_011769.1 983140 985404 R PFAM: acetyl-CoA carboxylase subunit alpha; KEGG: dde:Dde_1542 acetyl-CoA carboxylase; acetyl-CoA carboxylase complement(983140..985404) Desulfovibrio vulgaris str. 'Miyazaki F' 7172705 YP_002435241.1 CDS DvMF_0817 NC_011769.1 985648 987066 R PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain domain protein; KEGG: dde:Dde_1541 pyruvate carboxylase; biotin carboxylase complement(985648..987066) Desulfovibrio vulgaris str. 'Miyazaki F' 7172706 YP_002435242.1 CDS DvMF_0818 NC_011769.1 987175 987705 R PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1540 hypothetical protein; type IV pilus assembly PilZ complement(987175..987705) Desulfovibrio vulgaris str. 'Miyazaki F' 7172707 YP_002435243.1 CDS DvMF_0819 NC_011769.1 987821 988555 R PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein; OmpA/MotB domain-containing protein complement(987821..988555) Desulfovibrio vulgaris str. 'Miyazaki F' 7172708 YP_002435244.1 CDS DvMF_0820 NC_011769.1 988545 989300 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1538 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel complement(988545..989300) Desulfovibrio vulgaris str. 'Miyazaki F' 7172709 YP_002435245.1 CDS DvMF_0821 NC_011769.1 989439 990284 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 989439..990284 Desulfovibrio vulgaris str. 'Miyazaki F' 7172710 YP_002435246.1 CDS DvMF_0822 NC_011769.1 991207 993045 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: lip:LI0145 GTP-binding protein LepA; GTP-binding protein TypA 991207..993045 Desulfovibrio vulgaris str. 'Miyazaki F' 7172711 YP_002435247.1 CDS DvMF_0823 NC_011769.1 993314 994684 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dol:Dole_0427 two component, sigma54 specific, Fis family transcriptional regulator; Fis family transcriptional regulator complement(993314..994684) Desulfovibrio vulgaris str. 'Miyazaki F' 7172712 YP_002435248.1 CDS DvMF_0824 NC_011769.1 994692 996542 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dol:Dole_0426 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB complement(994692..996542) Desulfovibrio vulgaris str. 'Miyazaki F' 7172713 YP_002435249.1 CDS DvMF_0825 NC_011769.1 996836 997072 D hypothetical protein 996836..997072 Desulfovibrio vulgaris str. 'Miyazaki F' 7172714 YP_002435250.1 CDS DvMF_0826 NC_011769.1 997540 999438 D PFAM: cytochrome C assembly protein; KEGG: dde:Dde_1477 cytochrome C biogenesis protein CcmF; cytochrome C assembly protein 997540..999438 Desulfovibrio vulgaris str. 'Miyazaki F' 7172715 YP_002435251.1 CDS DvMF_0827 NC_011769.1 999431 1000003 D PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1473 hypothetical protein; hypothetical protein 999431..1000003 Desulfovibrio vulgaris str. 'Miyazaki F' 7172716 YP_002435252.1 CDS DvMF_0828 NC_011769.1 1000294 1000659 D KEGG: dde:Dde_1532 hypothetical protein; hypothetical protein 1000294..1000659 Desulfovibrio vulgaris str. 'Miyazaki F' 7172717 YP_002435253.1 CDS DvMF_0829 NC_011769.1 1000881 1001873 R PFAM: alpha/beta hydrolase fold; KEGG: dde:Dde_1531 hypothetical protein; alpha/beta hydrolase fold protein complement(1000881..1001873) Desulfovibrio vulgaris str. 'Miyazaki F' 7172718 YP_002435254.1 CDS DvMF_0830 NC_011769.1 1002304 1003563 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: dde:Dde_1530 hypothetical protein; hypothetical protein 1002304..1003563 Desulfovibrio vulgaris str. 'Miyazaki F' 7172719 YP_002435255.1 CDS DvMF_0831 NC_011769.1 1003800 1005158 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ana:alr5216 probable hemolysin; hypothetical protein 1003800..1005158 Desulfovibrio vulgaris str. 'Miyazaki F' 7172720 YP_002435256.1 CDS DvMF_0832 NC_011769.1 1005310 1005576 D PFAM: zinc finger DksA/TraR C4-type; KEGG: sew:SeSA_A0973 C4-type hypothetical protein, DksA/TraR family; hypothetical protein 1005310..1005576 Desulfovibrio vulgaris str. 'Miyazaki F' 7172721 YP_002435257.1 CDS DvMF_0833 NC_011769.1 1005855 1006979 R PFAM: cobalamin biosynthesis protein CbiB; KEGG: dde:Dde_1529 adenosylcobinamide-phosphate synthase; cobalamin biosynthesis protein CbiB complement(1005855..1006979) Desulfovibrio vulgaris str. 'Miyazaki F' 7172722 YP_002435258.1 CDS DvMF_0834 NC_011769.1 1006979 1007437 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1528 RNA methyltransferase; tRNA/rRNA methyltransferase SpoU complement(1006979..1007437) Desulfovibrio vulgaris str. 'Miyazaki F' 7172723 YP_002435259.1 CDS DvMF_0835 NC_011769.1 1007571 1009331 R PFAM: glycoside hydrolase; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase complement(1007571..1009331) Desulfovibrio vulgaris str. 'Miyazaki F' 7172724 YP_002435260.1 CDS DvMF_0836 NC_011769.1 1009355 1011106 R PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_2282 hydantoinase/oxoprolinase family protein; hydantoinase/oxoprolinase complement(1009355..1011106) Desulfovibrio vulgaris str. 'Miyazaki F' 7172725 YP_002435261.1 CDS DvMF_0837 NC_011769.1 1011110 1012198 R KEGG: dde:Dde_2283 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(1011110..1012198) Desulfovibrio vulgaris str. 'Miyazaki F' 7172726 YP_002435262.1 CDS DvMF_0838 NC_011769.1 1012255 1013007 R KEGG: shm:Shewmr7_0582 hypothetical protein; hypothetical protein complement(1012255..1013007) Desulfovibrio vulgaris str. 'Miyazaki F' 7172727 YP_002435263.1 CDS DvMF_0839 NC_011769.1 1013287 1014276 R PFAM: peptidase T2 asparaginase 2; KEGG: dde:Dde_2284 asparaginase; asparaginase complement(1013287..1014276) Desulfovibrio vulgaris str. 'Miyazaki F' 7172728 YP_002435264.1 CDS DvMF_0840 NC_011769.1 1014472 1016403 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(1014472..1016403) Desulfovibrio vulgaris str. 'Miyazaki F' 7172729 YP_002435265.1 CDS DvMF_0841 NC_011769.1 1016479 1017945 R TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: dde:Dde_2286 glycogen/starch synthase, ADP-glucose type; glycogen/starch synthase complement(1016479..1017945) Desulfovibrio vulgaris str. 'Miyazaki F' 7172730 YP_002435266.1 CDS DvMF_0842 NC_011769.1 1018111 1018641 R PFAM: NUDIX hydrolase; KEGG: dde:Dde_2287 MutT/NUDIX family protein; NUDIX hydrolase complement(1018111..1018641) Desulfovibrio vulgaris str. 'Miyazaki F' 7172731 YP_002435267.1 CDS DvMF_0843 NC_011769.1 1018796 1020058 D PFAM: glycosyl transferase family 9; KEGG: art:Arth_0353 glycosyl transferase, family 9; glycosyl transferase family protein 1018796..1020058 Desulfovibrio vulgaris str. 'Miyazaki F' 7172732 YP_002435268.1 CDS DvMF_0844 NC_011769.1 1020483 1021139 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: dde:Dde_2289 translation factor SUA5; Sua5/YciO/YrdC/YwlC family protein complement(1020483..1021139) Desulfovibrio vulgaris str. 'Miyazaki F' 7172733 YP_002435269.1 CDS DvMF_0845 NC_011769.1 1021251 1021718 D PFAM: protein of unknown function DUF163; KEGG: dde:Dde_2291 hypothetical protein; hypothetical protein 1021251..1021718 Desulfovibrio vulgaris str. 'Miyazaki F' 7172734 YP_002435270.1 CDS DvMF_0846 NC_011769.1 1021732 1024080 R KEGG: dde:Dde_3699 hypothetical protein; hypothetical protein complement(1021732..1024080) Desulfovibrio vulgaris str. 'Miyazaki F' 7172735 YP_002435271.1 CDS DvMF_0847 NC_011769.1 1024519 1024737 D KEGG: dde:Dde_2292 hypothetical protein; hypothetical protein 1024519..1024737 Desulfovibrio vulgaris str. 'Miyazaki F' 7172736 YP_002435272.1 CDS DvMF_0848 NC_011769.1 1024874 1025650 R PFAM: glucose inhibited division protein; KEGG: dde:Dde_2293 methyltransferase GidB; glucose inhibited division protein complement(1024874..1025650) Desulfovibrio vulgaris str. 'Miyazaki F' 7172737 YP_002435273.1 CDS DvMF_0849 NC_011769.1 1026168 1027130 D PFAM: acyl transferase; KEGG: dde:Dde_2294 [acyl-carrier-protein] S-malonyltransferase; acyl transferase 1026168..1027130 Desulfovibrio vulgaris str. 'Miyazaki F' 7172738 YP_002435274.1 CDS argS NC_011769.1 1027677 1029332 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1027677..1029332 Desulfovibrio vulgaris str. 'Miyazaki F' 7172739 YP_002435275.1 CDS DvMF_0851 NC_011769.1 1029357 1030292 D PFAM: sporulation domain protein; KEGG: lip:LI0230 hypothetical protein; sporulation domain protein 1029357..1030292 Desulfovibrio vulgaris str. 'Miyazaki F' 7172740 YP_002435276.1 CDS DvMF_0852 NC_011769.1 1030453 1031256 D PFAM: protein of unknown function DUF140; KEGG: dde:Dde_2297 hypothetical protein; hypothetical protein 1030453..1031256 Desulfovibrio vulgaris str. 'Miyazaki F' 7172741 YP_002435277.1 CDS DvMF_0853 NC_011769.1 1031269 1032090 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2298 ATPase; ABC transporter 1031269..1032090 Desulfovibrio vulgaris str. 'Miyazaki F' 7172742 YP_002435278.1 CDS DvMF_0854 NC_011769.1 1032199 1032645 D PFAM: hypothetical protein; KEGG: dde:Dde_2299 ABC transporter substrate-binding protein; hypothetical protein 1032199..1032645 Desulfovibrio vulgaris str. 'Miyazaki F' 7172743 YP_002435279.1 CDS DvMF_0855 NC_011769.1 1032648 1033352 D PFAM: toluene tolerance family protein; KEGG: lip:LI0234 ABC-type transporter involved in resistance to organic solvents, auxiliary component; ABC transporter 1032648..1033352 Desulfovibrio vulgaris str. 'Miyazaki F' 7172744 YP_002435280.1 CDS DvMF_0856 NC_011769.1 1033393 1034172 D PFAM: VacJ family lipoprotein; KEGG: dde:Dde_2301 surface lipoprotein-like; VacJ family lipoprotein 1033393..1034172 Desulfovibrio vulgaris str. 'Miyazaki F' 7172745 YP_002435281.1 CDS DvMF_0857 NC_011769.1 1034493 1034810 R PFAM: cupin; KEGG: dde:Dde_2303 hypothetical protein; cupin complement(1034493..1034810) Desulfovibrio vulgaris str. 'Miyazaki F' 7172746 YP_002435282.1 CDS DvMF_0858 NC_011769.1 1035310 1035669 D KEGG: dde:Dde_2304 hypothetical protein; hypothetical protein 1035310..1035669 Desulfovibrio vulgaris str. 'Miyazaki F' 7172747 YP_002435283.1 CDS DvMF_0859 NC_011769.1 1035666 1036271 D PFAM: protein of unknown function DUF340 membrane; KEGG: dde:Dde_2305 hypothetical protein; hypothetical protein 1035666..1036271 Desulfovibrio vulgaris str. 'Miyazaki F' 7172748 YP_002435284.1 CDS DvMF_0860 NC_011769.1 1036462 1037202 D PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_2306 extracellular solute-binding protein; family 3 extracellular solute-binding protein 1036462..1037202 Desulfovibrio vulgaris str. 'Miyazaki F' 7172749 YP_002435285.1 CDS DvMF_0861 NC_011769.1 1037292 1038083 D TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2307 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 1037292..1038083 Desulfovibrio vulgaris str. 'Miyazaki F' 7172750 YP_002435286.1 CDS DvMF_0862 NC_011769.1 1038070 1038816 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2308 ATPase; ABC transporter 1038070..1038816 Desulfovibrio vulgaris str. 'Miyazaki F' 7172751 YP_002435287.1 CDS DvMF_0863 NC_011769.1 1039060 1039740 R hypothetical protein complement(1039060..1039740) Desulfovibrio vulgaris str. 'Miyazaki F' 7172752 YP_002435288.1 CDS DvMF_0864 NC_011769.1 1040277 1043180 R KEGG: dde:Dde_2309 metal dependent phosphohydrolase; PFAM: amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase HD region; UTP-GlnB uridylyltransferase, GlnD complement(1040277..1043180) Desulfovibrio vulgaris str. 'Miyazaki F' 7172753 YP_002435289.1 CDS DvMF_0865 NC_011769.1 1043271 1043609 R PFAM: nitrogen regulatory protein P-II; KEGG: dde:Dde_2310 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II complement(1043271..1043609) Desulfovibrio vulgaris str. 'Miyazaki F' 7172754 YP_002435290.1 CDS DvMF_0866 NC_011769.1 1043694 1044902 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dde:Dde_2311 ammonium transporter; ammonium transporter complement(1043694..1044902) Desulfovibrio vulgaris str. 'Miyazaki F' 7172755 YP_002435291.1 CDS DvMF_0867 NC_011769.1 1045332 1045844 D PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_2313 thiol peroxidase (atypical 2-Cys peroxiredoxin); redoxin 1045332..1045844 Desulfovibrio vulgaris str. 'Miyazaki F' 7172756 YP_002435292.1 CDS DvMF_0868 NC_011769.1 1046375 1046848 D KEGG: dde:Dde_2314 hypothetical protein; hypothetical protein 1046375..1046848 Desulfovibrio vulgaris str. 'Miyazaki F' 7172757 YP_002435293.1 CDS DvMF_0869 NC_011769.1 1046977 1047213 R KEGG: dde:Dde_2315 hypothetical protein; hypothetical protein complement(1046977..1047213) Desulfovibrio vulgaris str. 'Miyazaki F' 7172758 YP_002435294.1 CDS DvMF_0870 NC_011769.1 1047322 1049592 D PFAM: RNA binding S1 domain protein; SMART: DNA-binding protein; Resolvase RNase H domain protein fold; KEGG: dde:Dde_2316 RNA-binding domain-containing protein; RNA binding S1 domain-containing protein 1047322..1049592 Desulfovibrio vulgaris str. 'Miyazaki F' 7172759 YP_002435295.1 CDS DvMF_0871 NC_011769.1 1049753 1052377 R KEGG: dde:Dde_2351 hypothetical protein; hypothetical protein complement(1049753..1052377) Desulfovibrio vulgaris str. 'Miyazaki F' 7172760 YP_002435296.1 CDS DvMF_0872 NC_011769.1 1052430 1052792 D KEGG: dde:Dde_2352 hypothetical protein; hypothetical protein 1052430..1052792 Desulfovibrio vulgaris str. 'Miyazaki F' 7172761 YP_002435297.1 CDS DvMF_0873 NC_011769.1 1053124 1053564 D PFAM: nuclease (SNase domain protein); KEGG: dde:Dde_2354 nuclease (SNase-like); nuclease 1053124..1053564 Desulfovibrio vulgaris str. 'Miyazaki F' 7172762 YP_002435298.1 CDS DvMF_0874 NC_011769.1 1053857 1055221 R PFAM: sodium:neurotransmitter symporter; KEGG: dde:Dde_2371 sodium-dependent symporter family protein; sodium:neurotransmitter symporter complement(1053857..1055221) Desulfovibrio vulgaris str. 'Miyazaki F' 7172763 YP_002435299.1 CDS DvMF_0875 NC_011769.1 1055529 1056635 R PFAM: thiamine biosynthesis protein; KEGG: dde:Dde_2372 hypothetical protein; thiamine biosynthesis protein complement(1055529..1056635) Desulfovibrio vulgaris str. 'Miyazaki F' 7172764 YP_002435300.1 CDS recA NC_011769.1 1056936 1058009 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1056936..1058009 Desulfovibrio vulgaris str. 'Miyazaki F' 7172765 YP_002435301.1 CDS alaS NC_011769.1 1058114 1060753 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1058114..1060753 Desulfovibrio vulgaris str. 'Miyazaki F' 7172766 YP_002435302.1 CDS DvMF_0878 NC_011769.1 1061141 1062562 R PFAM: protein of unknown function UPF0052 and CofD; KEGG: sit:TM1040_2627 protein of unknown function UPF0052 and CofD; hypothetical protein complement(1061141..1062562) Desulfovibrio vulgaris str. 'Miyazaki F' 7172767 YP_002435303.1 CDS DvMF_0879 NC_011769.1 1062552 1062815 R hypothetical protein complement(1062552..1062815) Desulfovibrio vulgaris str. 'Miyazaki F' 7172768 YP_002435304.1 CDS DvMF_0880 NC_011769.1 1062990 1063670 R TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: dde:Dde_2385 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU complement(1062990..1063670) Desulfovibrio vulgaris str. 'Miyazaki F' 7172769 YP_002435305.1 CDS DvMF_0881 NC_011769.1 1063778 1064545 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(1063778..1064545) Desulfovibrio vulgaris str. 'Miyazaki F' 7172770 YP_002435306.1 CDS DvMF_0882 NC_011769.1 1064865 1065557 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dde:Dde_2387 two component transcriptional regulator; two component transcriptional regulator, winged helix family complement(1064865..1065557) Desulfovibrio vulgaris str. 'Miyazaki F' 7172771 YP_002435307.1 CDS DvMF_0883 NC_011769.1 1065847 1066452 R PFAM: 3'-5' exonuclease; KEGG: dde:Dde_2388 3'-5' exonuclease; 3'-5' exonuclease complement(1065847..1066452) Desulfovibrio vulgaris str. 'Miyazaki F' 7172772 YP_002435308.1 CDS DvMF_0885 NC_011769.1 1068291 1069094 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dde:Dde_2390 dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits-like; nitrite and sulfite reductase 4Fe-4S region complement(1068291..1069094) Desulfovibrio vulgaris str. 'Miyazaki F' 7172774 YP_002435309.1 CDS trmE NC_011769.1 1069223 1070659 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(1069223..1070659) Desulfovibrio vulgaris str. 'Miyazaki F' 7172775 YP_002435310.1 CDS DvMF_0887 NC_011769.1 1070845 1072341 R PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dde:Dde_2393 single-stranded nucleic acid binding R3H; single-stranded nucleic acid binding R3H domain-containing protein complement(1070845..1072341) Desulfovibrio vulgaris str. 'Miyazaki F' 7172776 YP_002435311.1 CDS DvMF_0888 NC_011769.1 1072500 1074119 R PFAM: hypothetical protein; KEGG: dde:Dde_2394 protein translocase subunit YidC; hypothetical protein complement(1072500..1074119) Desulfovibrio vulgaris str. 'Miyazaki F' 7172777 YP_002435312.1 CDS DvMF_0889 NC_011769.1 1074109 1074426 R PFAM: protein of unknown function DUF37; KEGG: dde:Dde_2395 hypothetical protein; hypothetical protein complement(1074109..1074426) Desulfovibrio vulgaris str. 'Miyazaki F' 7172778 YP_002435313.1 CDS DvMF_0890 NC_011769.1 1074423 1074965 R TIGRFAM: ribonuclease P; PFAM: ribonuclease P protein; KEGG: dde:Dde_2396 ribonuclease P; ribonuclease P complement(1074423..1074965) Desulfovibrio vulgaris str. 'Miyazaki F' 7172779 YP_002435314.1 CDS DvMF_0891 NC_011769.1 1074953 1075090 R PFAM: ribosomal protein L34; KEGG: pca:Pcar_3146 ribosomal protein L34; 50S ribosomal protein L34 complement(1074953..1075090) Desulfovibrio vulgaris str. 'Miyazaki F' 7172780 YP_002435315.1 CDS DvMF_0892 NC_011769.1 1075631 1076659 R KEGG: dde:Dde_2398 hypothetical protein; hypothetical protein complement(1075631..1076659) Desulfovibrio vulgaris str. 'Miyazaki F' 7172781 YP_002435316.1 CDS DvMF_0893 NC_011769.1 1076836 1077468 R KEGG: dde:Dde_2399 hypothetical protein; hypothetical protein complement(1076836..1077468) Desulfovibrio vulgaris str. 'Miyazaki F' 7172782 YP_002435317.1 CDS DvMF_0894 NC_011769.1 1077690 1078352 R PFAM: Hpt domain protein; KEGG: hha:Hhal_0647 multi-sensor hybrid histidine kinase; Hpt protein complement(1077690..1078352) Desulfovibrio vulgaris str. 'Miyazaki F' 7172783 YP_002435318.1 CDS DvMF_0895 NC_011769.1 1078544 1079413 D KEGG: dde:Dde_1191 hypothetical protein; hypothetical protein 1078544..1079413 Desulfovibrio vulgaris str. 'Miyazaki F' 7172784 YP_002435319.1 CDS DvMF_0896 NC_011769.1 1079785 1080477 D KEGG: dde:Dde_2401 hypothetical protein; hypothetical protein 1079785..1080477 Desulfovibrio vulgaris str. 'Miyazaki F' 7172785 YP_002435320.1 CDS DvMF_0897 NC_011769.1 1080643 1081545 R KEGG: dde:Dde_2402 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: xylose isomerase; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 complement(1080643..1081545) Desulfovibrio vulgaris str. 'Miyazaki F' 7172786 YP_002435321.1 CDS DvMF_0898 NC_011769.1 1082059 1083585 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: dde:Dde_1463 mercuric reductase; pyridine nucleotide-disulfide oxidoreductase dimerisation subunit complement(1082059..1083585) Desulfovibrio vulgaris str. 'Miyazaki F' 7172787 YP_002435322.1 CDS DvMF_0899 NC_011769.1 1083563 1084339 R PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein; hypothetical protein complement(1083563..1084339) Desulfovibrio vulgaris str. 'Miyazaki F' 7172788 YP_002435323.1 CDS DvMF_0900 NC_011769.1 1084479 1085576 R PFAM: glucokinase; KEGG: dde:Dde_1461 glucokinase; glucokinase complement(1084479..1085576) Desulfovibrio vulgaris str. 'Miyazaki F' 7172789 YP_002435324.1 CDS DvMF_0901 NC_011769.1 1085701 1086051 R PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1460 hypothetical protein; type IV pilus assembly PilZ complement(1085701..1086051) Desulfovibrio vulgaris str. 'Miyazaki F' 7172790 YP_002435325.1 CDS DvMF_0902 NC_011769.1 1086319 1087098 R hypothetical protein complement(1086319..1087098) Desulfovibrio vulgaris str. 'Miyazaki F' 7172791 YP_002435326.1 CDS DvMF_0903 NC_011769.1 1087254 1087910 D PFAM: damage inducible protein CinA; KEGG: pap:PSPA7_1522 hypothetical protein; damage inducible protein CinA 1087254..1087910 Desulfovibrio vulgaris str. 'Miyazaki F' 7172792 YP_002435327.1 CDS DvMF_0904 NC_011769.1 1088007 1088822 D TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: ank:AnaeK_4070 2'-5' RNA ligase; 2'-5' RNA ligase 1088007..1088822 Desulfovibrio vulgaris str. 'Miyazaki F' 7172793 YP_002435328.1 CDS DvMF_0905 NC_011769.1 1089115 1089660 R KEGG: dde:Dde_1455 hypothetical protein; hypothetical protein complement(1089115..1089660) Desulfovibrio vulgaris str. 'Miyazaki F' 7172794 YP_002435329.1 CDS DvMF_0906 NC_011769.1 1089937 1090380 D PFAM: UspA domain protein; KEGG: dde:Dde_1454 universal stress protein; UspA domain-containing protein 1089937..1090380 Desulfovibrio vulgaris str. 'Miyazaki F' 7172795 YP_002435330.1 CDS DvMF_0907 NC_011769.1 1090604 1091962 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0642 NADH dehydrogenase; NADH dehydrogenase (ubiquinone) complement(1090604..1091962) Desulfovibrio vulgaris str. 'Miyazaki F' 7172796 YP_002435331.1 CDS DvMF_0908 NC_011769.1 1092507 1093670 D TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: dde:Dde_1453 histidinol phosphate aminotransferase; histidinol-phosphate aminotransferase 1092507..1093670 Desulfovibrio vulgaris str. 'Miyazaki F' 7172797 YP_002435332.1 CDS DvMF_0909 NC_011769.1 1093747 1094406 D KEGG: dde:Dde_1452 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 1093747..1094406 Desulfovibrio vulgaris str. 'Miyazaki F' 7172798 YP_002435333.1 CDS DvMF_0910 NC_011769.1 1094697 1095983 R TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: drm:Dred_1317 uracil-xanthine permease; uracil-xanthine permease complement(1094697..1095983) Desulfovibrio vulgaris str. 'Miyazaki F' 7172799 YP_002435334.1 CDS upp NC_011769.1 1096208 1096834 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(1096208..1096834) Desulfovibrio vulgaris str. 'Miyazaki F' 7172800 YP_002435335.1 CDS DvMF_0912 NC_011769.1 1096944 1098620 D TIGRFAM: dephospho-CoA kinase; pseudouridine synthase, RluA family; PFAM: Dephospho-CoA kinase; pseudouridine synthase; KEGG: dde:Dde_1447 pseudouridine synthase, RluD; pseudouridine synthase 1096944..1098620 Desulfovibrio vulgaris str. 'Miyazaki F' 7172801 YP_002435336.1 CDS DvMF_0913 NC_011769.1 1098632 1099375 D PFAM: rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein; rhomboid family protein 1098632..1099375 Desulfovibrio vulgaris str. 'Miyazaki F' 7172802 YP_002435337.1 CDS DvMF_0914 NC_011769.1 1099755 1100543 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1445 ATPase; ABC transporter 1099755..1100543 Desulfovibrio vulgaris str. 'Miyazaki F' 7172803 YP_002435338.1 CDS DvMF_0915 NC_011769.1 1100546 1101712 D PFAM: SufBD protein; KEGG: dde:Dde_1444 hypothetical protein; SufBD protein 1100546..1101712 Desulfovibrio vulgaris str. 'Miyazaki F' 7172804 YP_002435339.1 CDS DvMF_0916 NC_011769.1 1101802 1102089 D PFAM: YCII-related; KEGG: cvi:CV_4150 hypothetical protein; hypothetical protein 1101802..1102089 Desulfovibrio vulgaris str. 'Miyazaki F' 7172805 YP_002435340.1 CDS DvMF_0917 NC_011769.1 1102353 1104161 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(1102353..1104161) Desulfovibrio vulgaris str. 'Miyazaki F' 7172806 YP_002435341.1 CDS DvMF_0918 NC_011769.1 1110689 1111306 D KEGG: dde:Dde_2591 hypothetical protein; hypothetical protein 1110689..1111306 Desulfovibrio vulgaris str. 'Miyazaki F' 7172812 YP_002435342.1 CDS DvMF_0919 NC_011769.1 1111329 1111865 D KEGG: dde:Dde_2592 hypothetical protein; hypothetical protein 1111329..1111865 Desulfovibrio vulgaris str. 'Miyazaki F' 7172813 YP_002435343.1 CDS DvMF_0920 NC_011769.1 1112010 1113041 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2593 oligopeptide ABC transporter permease protein; binding-protein-dependent transporters inner membrane component 1112010..1113041 Desulfovibrio vulgaris str. 'Miyazaki F' 7172814 YP_002435344.1 CDS DvMF_0921 NC_011769.1 1113038 1113892 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2594 oligopeptide ABC transporter permease protein; binding-protein-dependent transporters inner membrane component 1113038..1113892 Desulfovibrio vulgaris str. 'Miyazaki F' 7172815 YP_002435345.1 CDS DvMF_0922 NC_011769.1 1113896 1115659 D KEGG: glo:Glov_3362 glycosyl transferase family 2; hypothetical protein 1113896..1115659 Desulfovibrio vulgaris str. 'Miyazaki F' 7172816 YP_002435346.1 CDS DvMF_0923 NC_011769.1 1115673 1117325 D PFAM: SMC domain protein; KEGG: dde:Dde_2596 DNA repair protein RecN; SMC domain-containing protein 1115673..1117325 Desulfovibrio vulgaris str. 'Miyazaki F' 7172817 YP_002435347.1 CDS DvMF_0924 NC_011769.1 1117468 1119033 D KEGG: dde:Dde_2597 hypothetical protein; hypothetical protein 1117468..1119033 Desulfovibrio vulgaris str. 'Miyazaki F' 7172818 YP_002435348.1 CDS DvMF_0925 NC_011769.1 1119239 1122352 R KEGG: dde:Dde_2598 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R complement(1119239..1122352) Desulfovibrio vulgaris str. 'Miyazaki F' 7172819 YP_002435349.1 CDS DvMF_0926 NC_011769.1 1122599 1123717 R KEGG: dde:Dde_2600 lipid-A-disaccharide synthase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase complement(1122599..1123717) Desulfovibrio vulgaris str. 'Miyazaki F' 7172820 YP_002435350.1 CDS DvMF_0927 NC_011769.1 1124044 1124751 R PFAM: protein of unknown function UPF0005; KEGG: dde:Dde_2601 membrane protein, putaive; hypothetical protein complement(1124044..1124751) Desulfovibrio vulgaris str. 'Miyazaki F' 7172821 YP_002435351.1 CDS DvMF_0928 NC_011769.1 1125196 1125687 R KEGG: kra:Krad_1656 flagellar hook-length control protein; hypothetical protein complement(1125196..1125687) Desulfovibrio vulgaris str. 'Miyazaki F' 7172822 YP_002435352.1 CDS DvMF_0929 NC_011769.1 1126202 1127698 D PFAM: regulatory protein LuxR; KEGG: pca:Pcar_0664 response regulator protein; LuxR family transcriptional regulator 1126202..1127698 Desulfovibrio vulgaris str. 'Miyazaki F' 7172823 YP_002435353.1 CDS DvMF_0930 NC_011769.1 1128058 1128780 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: spq:SPAB_02952 hypothetical protein; cytoplasmic chaperone TorD family protein 1128058..1128780 Desulfovibrio vulgaris str. 'Miyazaki F' 7172824 YP_002435354.1 CDS DvMF_0931 NC_011769.1 1128934 1131165 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit; molybdopterin oxidoreductase 1128934..1131165 Desulfovibrio vulgaris str. 'Miyazaki F' 7172825 YP_002435355.1 CDS DvMF_0932 NC_011769.1 1131176 1131763 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: stm:STM0612 hydrogenase protein; 4Fe-4S ferredoxin 1131176..1131763 Desulfovibrio vulgaris str. 'Miyazaki F' 7172826 YP_002435356.1 CDS DvMF_0933 NC_011769.1 1131766 1132599 D KEGG: sea:SeAg_B0652 molybdopterin-containing oxidoreductase membrane anchor subunit; molybdopterin-containing oxidoreductase membrane anchor subunit 1131766..1132599 Desulfovibrio vulgaris str. 'Miyazaki F' 7172827 YP_002435357.1 CDS DvMF_0934 NC_011769.1 1132703 1133608 R SMART: hypothetical protein; KEGG: dde:Dde_2717 hypothetical protein; hypothetical protein complement(1132703..1133608) Desulfovibrio vulgaris str. 'Miyazaki F' 7172828 YP_002435358.1 CDS DvMF_0935 NC_011769.1 1133707 1136172 D PFAM: glycoside hydrolase family 57; KEGG: dde:Dde_2603 hypothetical protein; glycoside hydrolase family protein 1133707..1136172 Desulfovibrio vulgaris str. 'Miyazaki F' 7172829 YP_002435359.1 CDS DvMF_0936 NC_011769.1 1136360 1136827 R KEGG: mbr:MONBRDRAFT_25873 hypothetical protein; hypothetical protein complement(1136360..1136827) Desulfovibrio vulgaris str. 'Miyazaki F' 7172830 YP_002435360.1 CDS DvMF_0937 NC_011769.1 1137169 1138017 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_3636 ferredoxin--NADP(+) reductase subunit alpha; ferredoxin-NADP(+) reductase subunit alpha 1137169..1138017 Desulfovibrio vulgaris str. 'Miyazaki F' 7172831 YP_002435361.1 CDS DvMF_0938 NC_011769.1 1138022 1139467 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 1138022..1139467 Desulfovibrio vulgaris str. 'Miyazaki F' 7172832 YP_002435362.1 CDS DvMF_0939 NC_011769.1 1139774 1140064 D KEGG: dde:Dde_1058 hypothetical protein; hypothetical protein 1139774..1140064 Desulfovibrio vulgaris str. 'Miyazaki F' 7172833 YP_002435363.1 CDS DvMF_0940 NC_011769.1 1140232 1141056 D KEGG: dde:Dde_1057 histidinol-phosphate phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; HisJ family histidinol phosphate phosphatase 1140232..1141056 Desulfovibrio vulgaris str. 'Miyazaki F' 7172834 YP_002435364.1 CDS DvMF_0941 NC_011769.1 1141160 1142848 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1055 ATPase; ABC transporter 1141160..1142848 Desulfovibrio vulgaris str. 'Miyazaki F' 7172835 YP_002435365.1 CDS DvMF_0942 NC_011769.1 1142845 1143618 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dde:Dde_1054 phosphoribosylanthranilate isomerase; N-(5 -phosphoribosyl)anthranilate isomerase 1142845..1143618 Desulfovibrio vulgaris str. 'Miyazaki F' 7172836 YP_002435366.1 CDS DvMF_0943 NC_011769.1 1143950 1144045 D hypothetical protein 1143950..1144045 Desulfovibrio vulgaris str. 'Miyazaki F' 7172837 YP_002435367.1 CDS DvMF_0944 NC_011769.1 1144454 1145299 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pmy:Pmen_3089 protein of unknown function DUF6, transmembrane; hypothetical protein 1144454..1145299 Desulfovibrio vulgaris str. 'Miyazaki F' 7172838 YP_002435368.1 CDS DvMF_0945 NC_011769.1 1145912 1146946 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1052 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 1145912..1146946 Desulfovibrio vulgaris str. 'Miyazaki F' 7172839 YP_002435369.1 CDS DvMF_0946 NC_011769.1 1147403 1148260 D PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_1051 HtpX-2 peptidase; peptidase M48 Ste24p 1147403..1148260 Desulfovibrio vulgaris str. 'Miyazaki F' 7172840 YP_002435370.1 CDS DvMF_0947 NC_011769.1 1148506 1148973 D PFAM: thioesterase superfamily protein; KEGG: dde:Dde_1049 phenylacetic acid degradation-related protein; thioesterase superfamily protein 1148506..1148973 Desulfovibrio vulgaris str. 'Miyazaki F' 7172841 YP_002435371.1 CDS DvMF_0948 NC_011769.1 1149403 1151166 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lip:LIC103 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1149403..1151166 Desulfovibrio vulgaris str. 'Miyazaki F' 7172842 YP_002435372.1 CDS DvMF_0949 NC_011769.1 1151326 1152135 R hypothetical protein complement(1151326..1152135) Desulfovibrio vulgaris str. 'Miyazaki F' 7172843 YP_002435373.1 CDS DvMF_0950 NC_011769.1 1152367 1153191 R KEGG: lip:LI1049 NA; hypothetical protein complement(1152367..1153191) Desulfovibrio vulgaris str. 'Miyazaki F' 7172844 YP_002435374.1 CDS DvMF_0951 NC_011769.1 1153672 1154961 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(1153672..1154961) Desulfovibrio vulgaris str. 'Miyazaki F' 7172845 YP_002435375.1 CDS DvMF_0952 NC_011769.1 1155005 1156231 R PFAM: cell division protein FtsA; KEGG: dde:Dde_1046 cell division protein FtsA; cell division protein FtsA complement(1155005..1156231) Desulfovibrio vulgaris str. 'Miyazaki F' 7172846 YP_002435376.1 CDS DvMF_0953 NC_011769.1 1156302 1157141 R PFAM: polypeptide-transport-associated domain protein FtsQ-type; KEGG: dde:Dde_1045 cell division protein FtsQ; polypeptide-transport-associated domain protein FtsQ-type complement(1156302..1157141) Desulfovibrio vulgaris str. 'Miyazaki F' 7172847 YP_002435377.1 CDS DvMF_0954 NC_011769.1 1157132 1158052 R KEGG: dde:Dde_1044 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1157132..1158052) Desulfovibrio vulgaris str. 'Miyazaki F' 7172848 YP_002435378.1 CDS murC NC_011769.1 1158054 1159421 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1158054..1159421) Desulfovibrio vulgaris str. 'Miyazaki F' 7172849 YP_002435379.1 CDS murG NC_011769.1 1159708 1160856 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(1159708..1160856) Desulfovibrio vulgaris str. 'Miyazaki F' 7172850 YP_002435380.1 CDS DvMF_0957 NC_011769.1 1160909 1162093 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dde:Dde_1041 cell cycle protein FtsW; cell division protein FtsW complement(1160909..1162093) Desulfovibrio vulgaris str. 'Miyazaki F' 7172851 YP_002435381.1 CDS DvMF_0958 NC_011769.1 1162090 1163427 R TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dde:Dde_1040 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(1162090..1163427) Desulfovibrio vulgaris str. 'Miyazaki F' 7172852 YP_002435382.1 CDS mraY NC_011769.1 1163594 1164670 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1163594..1164670) Desulfovibrio vulgaris str. 'Miyazaki F' 7172853 YP_002435383.1 CDS DvMF_0960 NC_011769.1 1164827 1166311 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dde:Dde_1037 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase complement(1164827..1166311) Desulfovibrio vulgaris str. 'Miyazaki F' 7172854 YP_002435384.1 CDS DvMF_0961 NC_011769.1 1166324 1168288 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: dde:Dde_1036 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase complement(1166324..1168288) Desulfovibrio vulgaris str. 'Miyazaki F' 7172855 YP_002435385.1 CDS DvMF_0962 NC_011769.1 1168453 1168740 R KEGG: dde:Dde_1035 hypothetical protein; hypothetical protein complement(1168453..1168740) Desulfovibrio vulgaris str. 'Miyazaki F' 7172856 YP_002435386.1 CDS mraW NC_011769.1 1168737 1169822 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dde:Dde_1034 methyltransferase; S-adenosyl-methyltransferase MraW complement(1168737..1169822) Desulfovibrio vulgaris str. 'Miyazaki F' 7172857 YP_002435387.1 CDS DvMF_0964 NC_011769.1 1169866 1170315 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(1169866..1170315) Desulfovibrio vulgaris str. 'Miyazaki F' 7172858 YP_002435388.1 CDS DvMF_0965 NC_011769.1 1170875 1172287 D KEGG: dde:Dde_1032 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: HpcH/HpaI aldolase; pyruvate kinase barrel; pyruvate kinase alpha/beta; pyruvate kinase 1170875..1172287 Desulfovibrio vulgaris str. 'Miyazaki F' 7172859 YP_002435389.1 CDS DvMF_0966 NC_011769.1 1172409 1173440 D PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1031 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1172409..1173440 Desulfovibrio vulgaris str. 'Miyazaki F' 7172860 YP_002435390.1 CDS DvMF_0967 NC_011769.1 1173724 1174221 R PFAM: CBS domain containing protein; KEGG: dde:Dde_2604 CBS domain-containing protein; XRE family transcriptional regulator complement(1173724..1174221) Desulfovibrio vulgaris str. 'Miyazaki F' 7172861 YP_002435391.1 CDS DvMF_0968 NC_011769.1 1174798 1176069 R KEGG: dde:Dde_2605 hypothetical protein; hypothetical protein complement(1174798..1176069) Desulfovibrio vulgaris str. 'Miyazaki F' 7172862 YP_002435392.1 CDS rplM NC_011769.1 1176576 1177010 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1176576..1177010 Desulfovibrio vulgaris str. 'Miyazaki F' 7172863 YP_002435393.1 CDS rpsI NC_011769.1 1177033 1177425 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1177033..1177425 Desulfovibrio vulgaris str. 'Miyazaki F' 7172864 YP_002435394.1 CDS aroK NC_011769.1 1177685 1178242 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 1177685..1178242 Desulfovibrio vulgaris str. 'Miyazaki F' 7172865 YP_002435395.1 CDS DvMF_0972 NC_011769.1 1178244 1178981 D KEGG: dde:Dde_2610 hypothetical protein; hypothetical protein 1178244..1178981 Desulfovibrio vulgaris str. 'Miyazaki F' 7172866 YP_002435396.1 CDS DvMF_0973 NC_011769.1 1179100 1179660 D KEGG: dde:Dde_2611 lipoprotein; lipoprotein 1179100..1179660 Desulfovibrio vulgaris str. 'Miyazaki F' 7172867 YP_002435397.1 CDS DvMF_0974 NC_011769.1 1179945 1180343 R KEGG: lip:LI0064 predicted transcriptional regulator; MucR family transcriptional regulator complement(1179945..1180343) Desulfovibrio vulgaris str. 'Miyazaki F' 7172868 YP_002435398.1 CDS pgk NC_011769.1 1180904 1182085 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(1180904..1182085) Desulfovibrio vulgaris str. 'Miyazaki F' 7172869 YP_002435399.1 CDS DvMF_0976 NC_011769.1 1182458 1184452 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(1182458..1184452) Desulfovibrio vulgaris str. 'Miyazaki F' 7172870 YP_002435400.1 CDS DvMF_0977 NC_011769.1 1184879 1185538 R PFAM: ribulose-phosphate 3-epimerase; KEGG: dde:Dde_2632 ribulose-5-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(1184879..1185538) Desulfovibrio vulgaris str. 'Miyazaki F' 7172871 YP_002435401.1 CDS DvMF_0978 NC_011769.1 1185738 1186502 R PFAM: regulatory protein MerR; KEGG: dde:Dde_2633 MerR family transcriptional regulator; MerR family transcriptional regulator complement(1185738..1186502) Desulfovibrio vulgaris str. 'Miyazaki F' 7172872 YP_002435402.1 CDS pheT NC_011769.1 1186730 1189147 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1186730..1189147) Desulfovibrio vulgaris str. 'Miyazaki F' 7172873 YP_002435403.1 CDS pheS NC_011769.1 1189403 1190440 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1189403..1190440) Desulfovibrio vulgaris str. 'Miyazaki F' 7172874 YP_002435404.1 CDS rplT NC_011769.1 1190462 1190815 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1190462..1190815) Desulfovibrio vulgaris str. 'Miyazaki F' 7172875 YP_002435405.1 CDS rpmI NC_011769.1 1191086 1191283 R PFAM: ribosomal protein L35; KEGG: dde:Dde_2637 50S ribosomal protein L35; 50S ribosomal protein L35 complement(1191086..1191283) Desulfovibrio vulgaris str. 'Miyazaki F' 7172876 YP_002435406.1 CDS infC NC_011769.1 1191499 1192029 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1191499..1192029) Desulfovibrio vulgaris str. 'Miyazaki F' 7172877 YP_002435407.1 CDS thrS NC_011769.1 1192037 1193971 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1192037..1193971) Desulfovibrio vulgaris str. 'Miyazaki F' 7172878 YP_002435408.1 CDS DvMF_0985 NC_011769.1 1195101 1197143 D PFAM: K potassium transporter; KEGG: sfu:Sfum_3574 K+ potassium transporter; K potassium transporter 1195101..1197143 Desulfovibrio vulgaris str. 'Miyazaki F' 7172880 YP_002435409.1 CDS DvMF_0986 NC_011769.1 1197455 1198594 R PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: gbm:Gbem_2040 2-hydroxyglutaryl-CoA dehydratase D-component; 2-hydroxyglutaryl-CoA dehydratase subunit D complement(1197455..1198594) Desulfovibrio vulgaris str. 'Miyazaki F' 7172881 YP_002435410.1 CDS DvMF_0987 NC_011769.1 1198861 1199670 R TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gsu:GSU2520 (R)-2-hydroxyglutaryl-CoA dehydratase activator; CoA-substrate-specific enzyme activase complement(1198861..1199670) Desulfovibrio vulgaris str. 'Miyazaki F' 7172882 YP_002435411.1 CDS DvMF_0988 NC_011769.1 1200225 1201844 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1200225..1201844 Desulfovibrio vulgaris str. 'Miyazaki F' 7172883 YP_002435412.1 CDS DvMF_0989 NC_011769.1 1202069 1202950 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2642 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 1202069..1202950 Desulfovibrio vulgaris str. 'Miyazaki F' 7172884 YP_002435413.1 CDS DvMF_0990 NC_011769.1 1203243 1204403 D PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_1164 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 1203243..1204403 Desulfovibrio vulgaris str. 'Miyazaki F' 7172885 YP_002435414.1 CDS DvMF_0991 NC_011769.1 1204387 1206210 D KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 1204387..1206210 Desulfovibrio vulgaris str. 'Miyazaki F' 7172886 YP_002435415.1 CDS DvMF_0992 NC_011769.1 1206307 1206990 R KEGG: bvi:Bcep1808_6345 diguanylate cyclase; hypothetical protein complement(1206307..1206990) Desulfovibrio vulgaris str. 'Miyazaki F' 7172887 YP_002435416.1 CDS DvMF_0993 NC_011769.1 1207197 1207886 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dde:Dde_2644 Crp/FNR family transcriptional regulator; Crp/Fnr family transcriptional regulator complement(1207197..1207886) Desulfovibrio vulgaris str. 'Miyazaki F' 7172888 YP_002435417.1 CDS DvMF_0994 NC_011769.1 1208096 1208602 D KEGG: dde:Dde_2645 hypothetical protein; hypothetical protein 1208096..1208602 Desulfovibrio vulgaris str. 'Miyazaki F' 7172889 YP_002435418.1 CDS DvMF_0995 NC_011769.1 1208747 1210003 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: pth:PTH_0998 HD-GYP domain; metal dependent phosphohydrolase complement(1208747..1210003) Desulfovibrio vulgaris str. 'Miyazaki F' 7172890 YP_002435419.1 CDS gltX NC_011769.1 1210482 1211876 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1210482..1211876) Desulfovibrio vulgaris str. 'Miyazaki F' 7172891 YP_002435420.1 CDS DvMF_0997 NC_011769.1 1212134 1212367 R PFAM: nitrogen-fixing NifU domain protein; KEGG: sat:SYN_02452 NifU-like domain protein; nitrogen-fixing NifU domain-containing protein complement(1212134..1212367) Desulfovibrio vulgaris str. 'Miyazaki F' 7172892 YP_002435421.1 CDS DvMF_0998 NC_011769.1 1212682 1213581 R KEGG: dde:Dde_2650 hypothetical protein; hypothetical protein complement(1212682..1213581) Desulfovibrio vulgaris str. 'Miyazaki F' 7172893 YP_002435422.1 CDS DvMF_0999 NC_011769.1 1213568 1214989 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2651 MATE efflux family protein; MATE efflux family protein complement(1213568..1214989) Desulfovibrio vulgaris str. 'Miyazaki F' 7172894 YP_002435423.1 CDS DvMF_1000 NC_011769.1 1215217 1216215 R KEGG: dde:Dde_2654 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; biotin--acetyl-CoA-carboxylase ligase complement(1215217..1216215) Desulfovibrio vulgaris str. 'Miyazaki F' 7172895 YP_002435424.1 CDS DvMF_1001 NC_011769.1 1216312 1217406 D KEGG: dde:Dde_2655 biotin synthase; TIGRFAM: biotin synthase; PFAM: radical SAM protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 1216312..1217406 Desulfovibrio vulgaris str. 'Miyazaki F' 7172896 YP_002435425.1 CDS DvMF_1002 NC_011769.1 1217403 1218878 D TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: dde:Dde_2656 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1217403..1218878 Desulfovibrio vulgaris str. 'Miyazaki F' 7172897 YP_002435426.1 CDS DvMF_1003 NC_011769.1 1218875 1219492 D KEGG: sat:SYN_03246 hypothetical cytosolic protein; hypothetical protein 1218875..1219492 Desulfovibrio vulgaris str. 'Miyazaki F' 7172898 YP_002435427.1 CDS DvMF_1004 NC_011769.1 1219486 1220316 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_2658 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR 1219486..1220316 Desulfovibrio vulgaris str. 'Miyazaki F' 7172899 YP_002435428.1 CDS DvMF_1005 NC_011769.1 1220388 1220801 D KEGG: dde:Dde_2659 acyl carrier protein; acyl carrier protein 1220388..1220801 Desulfovibrio vulgaris str. 'Miyazaki F' 7172900 YP_002435429.1 CDS DvMF_1006 NC_011769.1 1220843 1222219 D PFAM: beta-ketoacyl synthase; KEGG: dde:Dde_2660 beta-ketoacyl synthase; beta-ketoacyl synthase 1220843..1222219 Desulfovibrio vulgaris str. 'Miyazaki F' 7172901 YP_002435430.1 CDS DvMF_1007 NC_011769.1 1222216 1222743 D KEGG: dde:Dde_2661 hypothetical protein; hypothetical protein 1222216..1222743 Desulfovibrio vulgaris str. 'Miyazaki F' 7172902 YP_002435431.1 CDS DvMF_1008 NC_011769.1 1222770 1224110 D PFAM: aminotransferase class I and II; KEGG: dde:Dde_2662 8-amino-7-oxononanoate synthase; class I and II aminotransferase 1222770..1224110 Desulfovibrio vulgaris str. 'Miyazaki F' 7172903 YP_002435432.1 CDS DvMF_1009 NC_011769.1 1224107 1224850 D TIGRFAM: dethiobiotin synthase; KEGG: dde:Dde_2663 dethiobiotin synthase; dethiobiotin synthase 1224107..1224850 Desulfovibrio vulgaris str. 'Miyazaki F' 7172904 YP_002435433.1 CDS DvMF_1010 NC_011769.1 1225022 1226287 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dde:Dde_2664 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1225022..1226287) Desulfovibrio vulgaris str. 'Miyazaki F' 7172905 YP_002435434.1 CDS DvMF_1011 NC_011769.1 1226349 1227122 R PFAM: transcriptional regulator TrmB; KEGG: dde:Dde_2665 hypothetical protein; TrmB family transcriptional regulator complement(1226349..1227122) Desulfovibrio vulgaris str. 'Miyazaki F' 7172906 YP_002435435.1 CDS DvMF_1012 NC_011769.1 1227604 1228806 D KEGG: dde:Dde_2667 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1227604..1228806 Desulfovibrio vulgaris str. 'Miyazaki F' 7172907 YP_002435436.1 CDS DvMF_1013 NC_011769.1 1229017 1229439 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dde:Dde_2668 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1229017..1229439 Desulfovibrio vulgaris str. 'Miyazaki F' 7172908 YP_002435437.1 CDS DvMF_1014 NC_011769.1 1229596 1231254 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0886 diguanylate cyclase; diguanylate cyclase complement(1229596..1231254) Desulfovibrio vulgaris str. 'Miyazaki F' 7172909 YP_002435438.1 CDS DvMF_1015 NC_011769.1 1231611 1233890 R TIGRFAM: ferrous iron transporter B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transporter B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: dde:Dde_2669 ferrous iron transporter B; ferrous iron transporter B complement(1231611..1233890) Desulfovibrio vulgaris str. 'Miyazaki F' 7172910 YP_002435439.1 CDS DvMF_1016 NC_011769.1 1233893 1234150 R PFAM: FeoA family protein; KEGG: dde:Dde_2670 ferrous iron transporter A; FeoA family protein complement(1233893..1234150) Desulfovibrio vulgaris str. 'Miyazaki F' 7172911 YP_002435440.1 CDS DvMF_1017 NC_011769.1 1234272 1234478 R KEGG: dde:Dde_2672 hypothetical protein; hypothetical protein complement(1234272..1234478) Desulfovibrio vulgaris str. 'Miyazaki F' 7172912 YP_002435441.1 CDS DvMF_1018 NC_011769.1 1234516 1234764 R PFAM: FeoA family protein; KEGG: dde:Dde_2673 ferrous ion transporter; FeoA family protein complement(1234516..1234764) Desulfovibrio vulgaris str. 'Miyazaki F' 7172913 YP_002435442.1 CDS DvMF_1019 NC_011769.1 1235111 1236346 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dde:Dde_1186 M20/M25/M40 family peptidase; peptidase dimerisation domain-containing protein 1235111..1236346 Desulfovibrio vulgaris str. 'Miyazaki F' 7172914 YP_002435443.1 CDS DvMF_1020 NC_011769.1 1236422 1237498 D KEGG: mxa:MXAN_4665 oligopeptide/dipeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 1236422..1237498 Desulfovibrio vulgaris str. 'Miyazaki F' 7172915 YP_002435444.1 CDS DvMF_1021 NC_011769.1 1237817 1238467 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: dde:Dde_2674 two component LuxR family transcriptional regulator; LuxR family transcriptional regulator 1237817..1238467 Desulfovibrio vulgaris str. 'Miyazaki F' 7172916 YP_002435445.1 CDS DvMF_1022 NC_011769.1 1238619 1239476 R KEGG: ddgr:GH10507-PA; hypothetical protein complement(1238619..1239476) Desulfovibrio vulgaris str. 'Miyazaki F' 7172917 YP_002435446.1 CDS DvMF_1023 NC_011769.1 1240041 1242095 D PFAM: regulatory protein LuxR; KEGG: dtni:19367; LuxR family transcriptional regulator 1240041..1242095 Desulfovibrio vulgaris str. 'Miyazaki F' 7172919 YP_002435447.1 CDS DvMF_1024 NC_011769.1 1242732 1244696 D KEGG: dol:Dole_1403 hypothetical protein; hypothetical protein 1242732..1244696 Desulfovibrio vulgaris str. 'Miyazaki F' 7172920 YP_002435448.1 CDS DvMF_1025 NC_011769.1 1244708 1245256 D hypothetical protein 1244708..1245256 Desulfovibrio vulgaris str. 'Miyazaki F' 7172921 YP_002435449.1 CDS DvMF_1026 NC_011769.1 1245261 1245866 D KEGG: dol:Dole_1405 hypothetical protein; hypothetical protein 1245261..1245866 Desulfovibrio vulgaris str. 'Miyazaki F' 7172922 YP_002435450.1 CDS DvMF_1027 NC_011769.1 1245893 1247551 D PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dol:Dole_1406 type II and III secretion system protein; type II and III secretion system protein 1245893..1247551 Desulfovibrio vulgaris str. 'Miyazaki F' 7172923 YP_002435451.1 CDS DvMF_1028 NC_011769.1 1247610 1249316 D PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: dol:Dole_1408 type II secretion system protein E; type II secretion system protein E 1247610..1249316 Desulfovibrio vulgaris str. 'Miyazaki F' 7172924 YP_002435452.1 CDS DvMF_1029 NC_011769.1 1249389 1250606 D PFAM: type II secretion system protein; KEGG: dol:Dole_1409 type II secretion system protein; type II secretion system protein 1249389..1250606 Desulfovibrio vulgaris str. 'Miyazaki F' 7172925 YP_002435453.1 CDS DvMF_1030 NC_011769.1 1250773 1251216 D KEGG: sde:Sde_1141 MSHA pilin protein MshB; hypothetical protein 1250773..1251216 Desulfovibrio vulgaris str. 'Miyazaki F' 7172926 YP_002435454.1 CDS DvMF_1031 NC_011769.1 1251284 1252585 D KEGG: csc:Csac_1061 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA; twitching motility protein 1251284..1252585 Desulfovibrio vulgaris str. 'Miyazaki F' 7172927 YP_002435455.1 CDS DvMF_1032 NC_011769.1 1252905 1253342 D KEGG: dol:Dole_1416 hypothetical protein; hypothetical protein 1252905..1253342 Desulfovibrio vulgaris str. 'Miyazaki F' 7172928 YP_002435456.1 CDS DvMF_1033 NC_011769.1 1253339 1253809 D KEGG: pap:PSPA7_5191 type IV pilus modification protein PilV; hypothetical protein 1253339..1253809 Desulfovibrio vulgaris str. 'Miyazaki F' 7172929 YP_002435457.1 CDS DvMF_1034 NC_011769.1 1253821 1257135 D KEGG: dol:Dole_1414 hypothetical protein; hypothetical protein 1253821..1257135 Desulfovibrio vulgaris str. 'Miyazaki F' 7172930 YP_002435458.1 CDS DvMF_1035 NC_011769.1 1257393 1258034 R KEGG: cel:M18.1 M18.1; hypothetical protein complement(1257393..1258034) Desulfovibrio vulgaris str. 'Miyazaki F' 7172931 YP_002435459.1 CDS DvMF_1036 NC_011769.1 1258166 1258774 D PFAM: lytic transglycosylase catalytic; KEGG: sfu:Sfum_0050 lytic transglycosylase, catalytic; lytic transglycosylase 1258166..1258774 Desulfovibrio vulgaris str. 'Miyazaki F' 7172932 YP_002435460.1 CDS DvMF_1037 NC_011769.1 1258958 1259761 R PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: gsu:GSU2043 type 4 prepilin-like proteins leader peptide processing enzyme; peptidase A24A domain-containing protein complement(1258958..1259761) Desulfovibrio vulgaris str. 'Miyazaki F' 7172933 YP_002435461.1 CDS DvMF_1038 NC_011769.1 1260087 1261205 D KEGG: sat:SYN_00125 pili retraction protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA; twitching motility protein 1260087..1261205 Desulfovibrio vulgaris str. 'Miyazaki F' 7172934 YP_002435462.1 CDS DvMF_1039 NC_011769.1 1261238 1263280 D KEGG: dol:Dole_1407 type II secretory pathway ATPase ExeA; type II secretory pathway protein ExeA 1261238..1263280 Desulfovibrio vulgaris str. 'Miyazaki F' 7172935 YP_002435463.1 CDS DvMF_1040 NC_011769.1 1263736 1265313 D PFAM: PhoH family protein; SMART: nucleotide binding protein PINc; KEGG: dde:Dde_1059 PhoH-related protein; PhoH family protein 1263736..1265313 Desulfovibrio vulgaris str. 'Miyazaki F' 7172936 YP_002435464.1 CDS DvMF_1041 NC_011769.1 1265527 1266822 D TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: paa:Paes_0269 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase 1265527..1266822 Desulfovibrio vulgaris str. 'Miyazaki F' 7172937 YP_002435465.1 CDS DvMF_1042 NC_011769.1 1266843 1267562 R KEGG: trq:TRQ2_0171 hypothetical protein; hypothetical protein complement(1266843..1267562) Desulfovibrio vulgaris str. 'Miyazaki F' 7172938 YP_002435466.1 CDS DvMF_1043 NC_011769.1 1267853 1268716 R PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: dde:Dde_0675 glycine/betaine/L-proline ABC transporter periplasmic-binding protein; glycine/betaine ABC transporter substrate-binding protein complement(1267853..1268716) Desulfovibrio vulgaris str. 'Miyazaki F' 7172939 YP_002435467.1 CDS DvMF_1044 NC_011769.1 1268788 1269630 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0674 glycine/betaine/L-proline ABC transporter permease; glycine/betaine ABC transporter permease complement(1268788..1269630) Desulfovibrio vulgaris str. 'Miyazaki F' 7172940 YP_002435468.1 CDS DvMF_1045 NC_011769.1 1269672 1270865 R KEGG: dde:Dde_0673 glycine betaine/L-proline transport ATP binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter ATPase; PFAM: CBS domain containing protein; ABC transporter related; SMART: ATPase AAA; glycine betaine/L-proline ABC transporter ATPase complement(1269672..1270865) Desulfovibrio vulgaris str. 'Miyazaki F' 7172941 YP_002435469.1 CDS DvMF_1046 NC_011769.1 1271731 1272522 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afu:AF2409 iron-sulfur cluster binding protein; 4Fe-4S ferredoxin 1271731..1272522 Desulfovibrio vulgaris str. 'Miyazaki F' 7172942 YP_002435470.1 CDS DvMF_1047 NC_011769.1 1272594 1273151 D SMART: rhodanese; KEGG: sfu:Sfum_0093 rhodanese domain protein; rhodanese 1272594..1273151 Desulfovibrio vulgaris str. 'Miyazaki F' 7172943 YP_002435471.1 CDS DvMF_1048 NC_011769.1 1273441 1275138 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat; Sel1 domain-containing protein repeat-containing protein 1273441..1275138 Desulfovibrio vulgaris str. 'Miyazaki F' 7172944 YP_002435472.1 CDS DvMF_1049 NC_011769.1 1275173 1276438 D PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: scl:sce4660 permease of the major facilitator superfamily; major facilitator superfamily protein 1275173..1276438 Desulfovibrio vulgaris str. 'Miyazaki F' 7172945 YP_002435473.1 CDS DvMF_1050 NC_011769.1 1276762 1277601 R PFAM: inositol monophosphatase; KEGG: azo:azo2021 inositol-1-monophosphatase; inositol-phosphate phosphatase complement(1276762..1277601) Desulfovibrio vulgaris str. 'Miyazaki F' 7172946 YP_002435474.1 CDS DvMF_1051 NC_011769.1 1283869 1284516 D PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1288 hypothetical protein; hypothetical protein 1283869..1284516 Desulfovibrio vulgaris str. 'Miyazaki F' 7172952 YP_002435475.1 CDS DvMF_1052 NC_011769.1 1284844 1289943 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: lip:LI0552 signal transduction histidine kinase; multi-sensor hybrid histidine kinase 1284844..1289943 Desulfovibrio vulgaris str. 'Miyazaki F' 7172953 YP_002435476.1 CDS DvMF_1053 NC_011769.1 1290225 1290806 D PFAM: regulatory protein TetR; KEGG: dde:Dde_1283 TetR family transcriptional regulator; TetR family transcriptional regulator 1290225..1290806 Desulfovibrio vulgaris str. 'Miyazaki F' 7172954 YP_002435477.1 CDS DvMF_1054 NC_011769.1 1290974 1291501 D PFAM: protein of unknown function DUF1499; KEGG: syn:sll1620 hypothetical protein; hypothetical protein 1290974..1291501 Desulfovibrio vulgaris str. 'Miyazaki F' 7172955 YP_002435478.1 CDS DvMF_1055 NC_011769.1 1292056 1292988 D PFAM: Mg2 transporter protein CorA family protein; KEGG: gka:GK1567 transporter; Mg2 transporter protein CorA family protein 1292056..1292988 Desulfovibrio vulgaris str. 'Miyazaki F' 7172956 YP_002435479.1 CDS DvMF_1057 NC_011769.1 1293797 1295701 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: glo:Glov_0461 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 1293797..1295701 Desulfovibrio vulgaris str. 'Miyazaki F' 7172958 YP_002435480.1 CDS DvMF_1058 NC_011769.1 1296131 1297813 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(1296131..1297813) Desulfovibrio vulgaris str. 'Miyazaki F' 7172959 YP_002435481.1 CDS DvMF_1059 NC_011769.1 1298323 1299933 D PFAM: hemerythrin HHE cation binding domain protein; PAS fold-4 domain protein; Domain of unknown function DUF1858; KEGG: afw:Anae109_1669 hemerythrin HHE cation binding domain protein; PAS/PAC sensor protein 1298323..1299933 Desulfovibrio vulgaris str. 'Miyazaki F' 7172960 YP_002435482.1 CDS DvMF_1060 NC_011769.1 1300214 1302235 D KEGG: dde:Dde_1322 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1300214..1302235 Desulfovibrio vulgaris str. 'Miyazaki F' 7172961 YP_002435483.1 CDS DvMF_1061 NC_011769.1 1302496 1302813 R hypothetical protein complement(1302496..1302813) Desulfovibrio vulgaris str. 'Miyazaki F' 7172962 YP_002435484.1 CDS DvMF_1062 NC_011769.1 1302815 1304407 R PFAM: Tail Collar domain protein; KEGG: dde:Dde_1065 hypothetical protein; Tail Collar domain-containing protein complement(1302815..1304407) Desulfovibrio vulgaris str. 'Miyazaki F' 7172963 YP_002435485.1 CDS DvMF_1063 NC_011769.1 1304498 1305007 R KEGG: mrd:Mrad2831_3442 secretion protein HlyD family protein; hypothetical protein complement(1304498..1305007) Desulfovibrio vulgaris str. 'Miyazaki F' 7172964 YP_002435486.1 CDS DvMF_1064 NC_011769.1 1305009 1305587 R KEGG: ecv:APECO1_4050 hypothetical protein; hypothetical protein complement(1305009..1305587) Desulfovibrio vulgaris str. 'Miyazaki F' 7172965 YP_002435487.1 CDS DvMF_1065 NC_011769.1 1305752 1307830 R KEGG: dde:Dde_2545 hypothetical protein; hypothetical protein complement(1305752..1307830) Desulfovibrio vulgaris str. 'Miyazaki F' 7172966 YP_002435488.1 CDS DvMF_1066 NC_011769.1 1307834 1308430 R KEGG: dde:Dde_2546 hypothetical protein; hypothetical protein complement(1307834..1308430) Desulfovibrio vulgaris str. 'Miyazaki F' 7172967 YP_002435489.1 CDS DvMF_1067 NC_011769.1 1308427 1309047 R KEGG: fre:Franean1_1779 2-oxoglutarate dehydrogenase E2 component; hypothetical protein complement(1308427..1309047) Desulfovibrio vulgaris str. 'Miyazaki F' 7172968 YP_002435490.1 CDS DvMF_1068 NC_011769.1 1309125 1309523 R hypothetical protein complement(1309125..1309523) Desulfovibrio vulgaris str. 'Miyazaki F' 7172969 YP_002435491.1 CDS DvMF_1069 NC_011769.1 1309598 1310512 R KEGG: dde:Dde_2547 hypothetical protein; hypothetical protein complement(1309598..1310512) Desulfovibrio vulgaris str. 'Miyazaki F' 7172970 YP_002435492.1 CDS DvMF_1070 NC_011769.1 1310532 1311197 R KEGG: dde:Dde_2548 hypothetical protein; hypothetical protein complement(1310532..1311197) Desulfovibrio vulgaris str. 'Miyazaki F' 7172971 YP_002435493.1 CDS DvMF_1071 NC_011769.1 1311282 1311773 R KEGG: dde:Dde_2549 hypothetical protein; hypothetical protein complement(1311282..1311773) Desulfovibrio vulgaris str. 'Miyazaki F' 7172972 YP_002435494.1 CDS DvMF_1072 NC_011769.1 1311770 1313557 R KEGG: dde:Dde_2550 hypothetical protein; hypothetical protein complement(1311770..1313557) Desulfovibrio vulgaris str. 'Miyazaki F' 7172973 YP_002435495.1 CDS DvMF_1073 NC_011769.1 1313568 1313795 R KEGG: dde:Dde_2551 hypothetical protein; hypothetical protein complement(1313568..1313795) Desulfovibrio vulgaris str. 'Miyazaki F' 7172974 YP_002435496.1 CDS DvMF_1074 NC_011769.1 1314497 1315180 D KEGG: nfa:nfa43210 hypothetical protein; hypothetical protein 1314497..1315180 Desulfovibrio vulgaris str. 'Miyazaki F' 7172975 YP_002435497.1 CDS DvMF_1075 NC_011769.1 1315251 1315433 D hypothetical protein 1315251..1315433 Desulfovibrio vulgaris str. 'Miyazaki F' 7172976 YP_002435498.1 CDS DvMF_1076 NC_011769.1 1315584 1317014 D KEGG: dde:Dde_2566 dienelactone hydrolase-like; dienelactone hydrolase-like protein 1315584..1317014 Desulfovibrio vulgaris str. 'Miyazaki F' 7172977 YP_002435499.1 CDS DvMF_1077 NC_011769.1 1317524 1318327 D hypothetical protein 1317524..1318327 Desulfovibrio vulgaris str. 'Miyazaki F' 7172978 YP_002435500.1 CDS DvMF_1078 NC_011769.1 1318795 1319331 D KEGG: dde:Dde_2569 hypothetical protein; hypothetical protein 1318795..1319331 Desulfovibrio vulgaris str. 'Miyazaki F' 7172979 YP_002435501.1 CDS DvMF_1079 NC_011769.1 1319328 1319684 D KEGG: pla:Plav_0904 hypothetical protein; hypothetical protein 1319328..1319684 Desulfovibrio vulgaris str. 'Miyazaki F' 7172980 YP_002435502.1 CDS DvMF_1080 NC_011769.1 1319828 1320598 D KEGG: sit:TM1040_0800 terminase small subunit; hypothetical protein 1319828..1320598 Desulfovibrio vulgaris str. 'Miyazaki F' 7172981 YP_002435503.1 CDS DvMF_1081 NC_011769.1 1321096 1321299 D KEGG: dde:Dde_2564 hypothetical protein; hypothetical protein 1321096..1321299 Desulfovibrio vulgaris str. 'Miyazaki F' 7172982 YP_002435504.1 CDS DvMF_1082 NC_011769.1 1321442 1321846 R hypothetical protein complement(1321442..1321846) Desulfovibrio vulgaris str. 'Miyazaki F' 7172983 YP_002435505.1 CDS DvMF_1083 NC_011769.1 1322238 1322894 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_1168 TPR repeat-containing protein; hypothetical protein complement(1322238..1322894) Desulfovibrio vulgaris str. 'Miyazaki F' 7172984 YP_002435506.1 CDS DvMF_1084 NC_011769.1 1323133 1323858 R PFAM: OmpA/MotB domain protein; KEGG: lip:LI0483 flagellar motor protein; OmpA/MotB domain-containing protein complement(1323133..1323858) Desulfovibrio vulgaris str. 'Miyazaki F' 7172985 YP_002435507.1 CDS DvMF_1085 NC_011769.1 1323926 1324771 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(1323926..1324771) Desulfovibrio vulgaris str. 'Miyazaki F' 7172986 YP_002435508.1 CDS DvMF_1086 NC_011769.1 1324781 1325494 R hypothetical protein complement(1324781..1325494) Desulfovibrio vulgaris str. 'Miyazaki F' 7172987 YP_002435509.1 CDS DvMF_1087 NC_011769.1 1325892 1326509 D KEGG: dde:Dde_2572 hypothetical protein; hypothetical protein 1325892..1326509 Desulfovibrio vulgaris str. 'Miyazaki F' 7172988 YP_002435510.1 CDS DvMF_1088 NC_011769.1 1326701 1329169 D KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 1326701..1329169 Desulfovibrio vulgaris str. 'Miyazaki F' 7172989 YP_002435511.1 CDS DvMF_1089 NC_011769.1 1329166 1331772 D KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 1329166..1331772 Desulfovibrio vulgaris str. 'Miyazaki F' 7172990 YP_002435512.1 CDS DvMF_1090 NC_011769.1 1332380 1333438 D KEGG: sen:SACE_1344 PE-PGRS family protein; hypothetical protein 1332380..1333438 Desulfovibrio vulgaris str. 'Miyazaki F' 7172991 YP_002435513.1 CDS DvMF_1091 NC_011769.1 1334256 1334786 R PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dde:Dde_1155 hypothetical protein; ssDNA-binding protein complement(1334256..1334786) Desulfovibrio vulgaris str. 'Miyazaki F' 7172992 YP_002435514.1 CDS DvMF_1092 NC_011769.1 1334955 1335386 R KEGG: dde:Dde_1156 hypothetical protein; hypothetical protein complement(1334955..1335386) Desulfovibrio vulgaris str. 'Miyazaki F' 7172993 YP_002435515.1 CDS DvMF_1093 NC_011769.1 1335377 1335685 R KEGG: dde:Dde_1157 hypothetical protein; hypothetical protein complement(1335377..1335685) Desulfovibrio vulgaris str. 'Miyazaki F' 7172994 YP_002435516.1 CDS DvMF_1094 NC_011769.1 1335980 1336729 D PFAM: peptidase S24 and S26 domain protein; KEGG: dde:Dde_1158 transcriptional regulator; phage repressor 1335980..1336729 Desulfovibrio vulgaris str. 'Miyazaki F' 7172995 YP_002435517.1 CDS DvMF_1095 NC_011769.1 1337063 1337449 D hypothetical protein 1337063..1337449 Desulfovibrio vulgaris str. 'Miyazaki F' 7172996 YP_002435518.1 CDS DvMF_1096 NC_011769.1 1337733 1342379 D KEGG: mag:amb1841 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1337733..1342379 Desulfovibrio vulgaris str. 'Miyazaki F' 7172997 YP_002435519.1 CDS DvMF_1097 NC_011769.1 1342486 1343661 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mag:amb4144 response regulator; response regulator receiver modulated metal dependent phosphohydrolase 1342486..1343661 Desulfovibrio vulgaris str. 'Miyazaki F' 7172998 YP_002435520.1 CDS DvMF_1098 NC_011769.1 1344215 1345441 D PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0592 glycosyltransferase-like protein; group 1 glycosyl transferase 1344215..1345441 Desulfovibrio vulgaris str. 'Miyazaki F' 7172999 YP_002435521.1 CDS DvMF_1099 NC_011769.1 1345563 1347122 R TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gur:Gura_2706 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter complement(1345563..1347122) Desulfovibrio vulgaris str. 'Miyazaki F' 7173000 YP_002435522.1 CDS DvMF_1100 NC_011769.1 1347141 1348472 R PFAM: secretion protein HlyD; KEGG: gbe:GbCGDNIH1_1724 multidrug resistance protein A; secretion protein HlyD complement(1347141..1348472) Desulfovibrio vulgaris str. 'Miyazaki F' 7173001 YP_002435523.1 CDS DvMF_1101 NC_011769.1 1349042 1349929 R PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0241 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(1349042..1349929) Desulfovibrio vulgaris str. 'Miyazaki F' 7173002 YP_002435524.1 CDS DvMF_1102 NC_011769.1 1350278 1352341 R KEGG: gme:Gmet_0701 cache sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; Cache type 2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor protein complement(1350278..1352341) Desulfovibrio vulgaris str. 'Miyazaki F' 7173003 YP_002435525.1 CDS DvMF_1103 NC_011769.1 1352724 1353293 R PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: sat:SYN_01301 fog:tpr repeat protein; hypothetical protein complement(1352724..1353293) Desulfovibrio vulgaris str. 'Miyazaki F' 7173004 YP_002435526.1 CDS DvMF_1104 NC_011769.1 1353317 1353988 R KEGG: maq:Maqu_2157 hypothetical protein; hypothetical protein complement(1353317..1353988) Desulfovibrio vulgaris str. 'Miyazaki F' 7173005 YP_002435527.1 CDS DvMF_1105 NC_011769.1 1354063 1354461 R KEGG: sul:SYO3AOP1_0959 hypothetical protein; hypothetical protein complement(1354063..1354461) Desulfovibrio vulgaris str. 'Miyazaki F' 7173006 YP_002435528.1 CDS DvMF_1106 NC_011769.1 1355112 1356917 D KEGG: dde:Dde_2556 phage uncharacterized protein-like; phage protein 1355112..1356917 Desulfovibrio vulgaris str. 'Miyazaki F' 7173007 YP_002435529.1 CDS DvMF_1107 NC_011769.1 1357048 1357680 D KEGG: dde:Dde_2557 hypothetical protein; hypothetical protein 1357048..1357680 Desulfovibrio vulgaris str. 'Miyazaki F' 7173008 YP_002435530.1 CDS DvMF_1108 NC_011769.1 1357884 1358660 R KEGG: lip:LI0197 similar to endo-1,4-beta-xylanase; endo-1,4-beta-xylanase-like protein complement(1357884..1358660) Desulfovibrio vulgaris str. 'Miyazaki F' 7173009 YP_002435531.1 CDS DvMF_1109 NC_011769.1 1358820 1360046 R PFAM: sodium/calcium exchanger membrane region; KEGG: cak:Caul_2287 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region complement(1358820..1360046) Desulfovibrio vulgaris str. 'Miyazaki F' 7173010 YP_002435532.1 CDS DvMF_1110 NC_011769.1 1360407 1360715 D KEGG: dde:Dde_1149 hypothetical protein; hypothetical protein 1360407..1360715 Desulfovibrio vulgaris str. 'Miyazaki F' 7173011 YP_002435533.1 CDS DvMF_1111 NC_011769.1 1360921 1361130 D KEGG: ote:Oter_4455 DsrE family protein; DsrE family protein 1360921..1361130 Desulfovibrio vulgaris str. 'Miyazaki F' 7173012 YP_002435534.1 CDS DvMF_1112 NC_011769.1 1361478 1362383 D hypothetical protein 1361478..1362383 Desulfovibrio vulgaris str. 'Miyazaki F' 7173013 YP_002435535.1 CDS DvMF_1113 NC_011769.1 1362461 1363273 D KEGG: lip:LI0739 NA; hypothetical protein 1362461..1363273 Desulfovibrio vulgaris str. 'Miyazaki F' 7173014 YP_002435536.1 CDS DvMF_1114 NC_011769.1 1363419 1365521 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; nitrate and nitrite sensing domain protein; KEGG: lip:LIC103 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1363419..1365521) Desulfovibrio vulgaris str. 'Miyazaki F' 7173015 YP_002435537.1 CDS DvMF_1115 NC_011769.1 1365997 1366413 R PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2647 phenylacetic acid degradation-related protein; thioesterase superfamily protein complement(1365997..1366413) Desulfovibrio vulgaris str. 'Miyazaki F' 7173016 YP_002435538.1 CDS DvMF_1116 NC_011769.1 1366582 1367028 D PFAM: threonyl/alanyl tRNA synthetase SAD; KEGG: bth:BT_0566 alanyl-tRNA synthetase; threonyl/alanyl tRNA synthetase SAD 1366582..1367028 Desulfovibrio vulgaris str. 'Miyazaki F' 7173017 YP_002435539.1 CDS DvMF_1117 NC_011769.1 1367399 1369405 D molecular chaperone; heat shock protein 90 1367399..1369405 Desulfovibrio vulgaris str. 'Miyazaki F' 7173018 YP_002435540.1 CDS DvMF_1118 NC_011769.1 1369918 1372659 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_1650 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1369918..1372659 Desulfovibrio vulgaris str. 'Miyazaki F' 7173019 YP_002435541.1 CDS DvMF_1119 NC_011769.1 1373036 1375261 R PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: dol:Dole_0855 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(1373036..1375261) Desulfovibrio vulgaris str. 'Miyazaki F' 7173020 YP_002435542.1 CDS DvMF_1120 NC_011769.1 1375744 1376295 R hypothetical protein complement(1375744..1376295) Desulfovibrio vulgaris str. 'Miyazaki F' 7173021 YP_002435543.1 CDS DvMF_1121 NC_011769.1 1377168 1377749 R hypothetical protein complement(1377168..1377749) Desulfovibrio vulgaris str. 'Miyazaki F' 7173022 YP_002435544.1 CDS DvMF_1122 NC_011769.1 1378795 1380240 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sfu:Sfum_4061 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; serine-type D-Ala-D-Ala carboxypeptidase 1378795..1380240 Desulfovibrio vulgaris str. 'Miyazaki F' 7173023 YP_002435545.1 CDS DvMF_1123 NC_011769.1 1380349 1380717 R TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mxa:MXAN_6868 6-pyruvoyl tetrahydrobiopterin synthase; queuosine biosynthesis protein QueD complement(1380349..1380717) Desulfovibrio vulgaris str. 'Miyazaki F' 7173024 YP_002435546.1 CDS DvMF_1124 NC_011769.1 1380868 1381542 R KEGG: met:M446_6594 radical SAM protein; radical SAM protein complement(1380868..1381542) Desulfovibrio vulgaris str. 'Miyazaki F' 7173025 YP_002435547.1 CDS DvMF_1125 NC_011769.1 1381542 1382261 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: bra:BRADO3849 ExsB; exsB protein complement(1381542..1382261) Desulfovibrio vulgaris str. 'Miyazaki F' 7173026 YP_002435548.1 CDS DvMF_1126 NC_011769.1 1382807 1383985 D PFAM: FAD dependent oxidoreductase; KEGG: tpe:Tpen_1127 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1382807..1383985 Desulfovibrio vulgaris str. 'Miyazaki F' 7173027 YP_002435549.1 CDS DvMF_1127 NC_011769.1 1383990 1384883 D TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpe:Tpen_1126 succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 1383990..1384883 Desulfovibrio vulgaris str. 'Miyazaki F' 7173028 YP_002435550.1 CDS DvMF_1128 NC_011769.1 1385058 1385573 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: gbm:Gbem_1948 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 1385058..1385573 Desulfovibrio vulgaris str. 'Miyazaki F' 7173029 YP_002435551.1 CDS DvMF_1129 NC_011769.1 1385629 1386324 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: dde:Dde_0977 two component LuxR family transcriptional regulator; LuxR family transcriptional regulator complement(1385629..1386324) Desulfovibrio vulgaris str. 'Miyazaki F' 7173030 YP_002435552.1 CDS DvMF_1130 NC_011769.1 1386837 1387103 D KEGG: dde:Dde_0976 hypothetical protein; hypothetical protein 1386837..1387103 Desulfovibrio vulgaris str. 'Miyazaki F' 7173031 YP_002435553.1 CDS DvMF_1131 NC_011769.1 1387508 1389010 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ote:Oter_3856 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 1387508..1389010 Desulfovibrio vulgaris str. 'Miyazaki F' 7173032 YP_002435554.1 CDS DvMF_1132 NC_011769.1 1389000 1390391 D PFAM: pseudouridine synthase; KEGG: dde:Dde_0975 pseudouridylate synthase 23S RNA-specific-like; pseudouridine synthase 1389000..1390391 Desulfovibrio vulgaris str. 'Miyazaki F' 7173033 YP_002435555.1 CDS DvMF_1133 NC_011769.1 1390498 1391184 R KEGG: dde:Dde_2062 hypothetical protein; hypothetical protein complement(1390498..1391184) Desulfovibrio vulgaris str. 'Miyazaki F' 7173034 YP_002435556.1 CDS DvMF_1134 NC_011769.1 1391367 1393082 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(1391367..1393082) Desulfovibrio vulgaris str. 'Miyazaki F' 7173035 YP_002435557.1 CDS DvMF_1135 NC_011769.1 1393458 1394480 R PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2716 signal transduction protein; metal dependent phosphohydrolase complement(1393458..1394480) Desulfovibrio vulgaris str. 'Miyazaki F' 7173036 YP_002435558.1 CDS DvMF_1136 NC_011769.1 1394477 1395385 R SMART: hypothetical protein; KEGG: dde:Dde_2717 hypothetical protein; hypothetical protein complement(1394477..1395385) Desulfovibrio vulgaris str. 'Miyazaki F' 7173037 YP_002435559.1 CDS DvMF_1137 NC_011769.1 1395612 1396364 R KEGG: dde:Dde_2718 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(1395612..1396364) Desulfovibrio vulgaris str. 'Miyazaki F' 7173038 YP_002435560.1 CDS DvMF_1138 NC_011769.1 1396370 1396999 R KEGG: dde:Dde_2719 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase complement(1396370..1396999) Desulfovibrio vulgaris str. 'Miyazaki F' 7173039 YP_002435561.1 CDS DvMF_1139 NC_011769.1 1396999 1397265 R PFAM: protein of unknown function DUF370; KEGG: dde:Dde_2720 hypothetical protein; hypothetical protein complement(1396999..1397265) Desulfovibrio vulgaris str. 'Miyazaki F' 7173040 YP_002435562.1 CDS DvMF_1140 NC_011769.1 1397430 1398311 R PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: dde:Dde_2721 hypothetical protein; hypothetical protein complement(1397430..1398311) Desulfovibrio vulgaris str. 'Miyazaki F' 7173041 YP_002435563.1 CDS DvMF_1141 NC_011769.1 1398572 1401739 R KEGG: mag:amb1956 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase complement(1398572..1401739) Desulfovibrio vulgaris str. 'Miyazaki F' 7173042 YP_002435564.1 CDS DvMF_1142 NC_011769.1 1401995 1402645 R PFAM: SNARE associated Golgi protein; KEGG: lip:LI0705 DedA protein family; hypothetical protein complement(1401995..1402645) Desulfovibrio vulgaris str. 'Miyazaki F' 7173043 YP_002435565.1 CDS DvMF_1143 NC_011769.1 1403253 1403699 D TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3667 flavodoxin, short chain; flavodoxin 1403253..1403699 Desulfovibrio vulgaris str. 'Miyazaki F' 7173044 YP_002435566.1 CDS DvMF_1144 NC_011769.1 1403824 1404039 D hypothetical protein 1403824..1404039 Desulfovibrio vulgaris str. 'Miyazaki F' 7173045 YP_002435567.1 CDS DvMF_1145 NC_011769.1 1404036 1404221 D hypothetical protein 1404036..1404221 Desulfovibrio vulgaris str. 'Miyazaki F' 7173046 YP_002435568.1 CDS DvMF_1146 NC_011769.1 1404754 1405446 D KEGG: mmu:13800 enabled homolog (Drosophila); hypothetical protein 1404754..1405446 Desulfovibrio vulgaris str. 'Miyazaki F' 7173047 YP_002435569.1 CDS DvMF_1147 NC_011769.1 1406413 1407966 D KEGG: hmo:HM1_3016 L-lactate permease family protein; L-lactate permease 1406413..1407966 Desulfovibrio vulgaris str. 'Miyazaki F' 7173048 YP_002435570.1 CDS DvMF_1148 NC_011769.1 1408259 1410103 D PFAM: TrkA-N domain protein; TrkA-C domain protein; ion transport 2 domain protein; KEGG: dol:Dole_0161 TrkA domain-containing protein; TrkA-N domain-containing protein 1408259..1410103 Desulfovibrio vulgaris str. 'Miyazaki F' 7173049 YP_002435571.1 CDS DvMF_1149 NC_011769.1 1410162 1411055 R PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_2931 protein of unknown function DUF81; hypothetical protein complement(1410162..1411055) Desulfovibrio vulgaris str. 'Miyazaki F' 7173050 YP_002435572.1 CDS DvMF_1150 NC_011769.1 1411052 1411489 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: mba:Mbar_A2644 hypothetical protein; alkylhydroperoxidase complement(1411052..1411489) Desulfovibrio vulgaris str. 'Miyazaki F' 7173051 YP_002435573.1 CDS DvMF_1151 NC_011769.1 1411686 1412609 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfu:Sfum_1907 LysR family transcriptional regulator; LysR family transcriptional regulator 1411686..1412609 Desulfovibrio vulgaris str. 'Miyazaki F' 7173052 YP_002435574.1 CDS DvMF_1152 NC_011769.1 1413260 1414408 D PFAM: Domain of unkown function DUF1786 pyruvate format-lyase activating enzyme; KEGG: dde:Dde_0971 hypothetical protein; hypothetical protein 1413260..1414408 Desulfovibrio vulgaris str. 'Miyazaki F' 7173054 YP_002435575.1 CDS DvMF_1153 NC_011769.1 1414629 1415933 D KEGG: dde:Dde_0972 phenylacetate-CoA ligase; phenylacetate--CoA ligase 1414629..1415933 Desulfovibrio vulgaris str. 'Miyazaki F' 7173055 YP_002435576.1 CDS DvMF_1154 NC_011769.1 1416102 1416611 D PFAM: protein of unknown function DUF456; KEGG: dde:Dde_0973 hypothetical protein; hypothetical protein 1416102..1416611 Desulfovibrio vulgaris str. 'Miyazaki F' 7173056 YP_002435577.1 CDS DvMF_1155 NC_011769.1 1416747 1417547 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_0974 RNA methyltransferase; RNA methyltransferase, TrmH family, group 1 1416747..1417547 Desulfovibrio vulgaris str. 'Miyazaki F' 7173057 YP_002435578.1 CDS DvMF_1156 NC_011769.1 1417854 1420274 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1417854..1420274 Desulfovibrio vulgaris str. 'Miyazaki F' 7173058 YP_002435579.1 CDS DvMF_1157 NC_011769.1 1420444 1422615 R KEGG: dde:Dde_1421 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein complement(1420444..1422615) Desulfovibrio vulgaris str. 'Miyazaki F' 7173059 YP_002435580.1 CDS DvMF_1158 NC_011769.1 1422747 1424039 R PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein; transglutaminase complement(1422747..1424039) Desulfovibrio vulgaris str. 'Miyazaki F' 7173060 YP_002435581.1 CDS DvMF_1159 NC_011769.1 1424039 1425439 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein complement(1424039..1425439) Desulfovibrio vulgaris str. 'Miyazaki F' 7173061 YP_002435582.1 CDS DvMF_1160 NC_011769.1 1425605 1427809 R KEGG: dde:Dde_1418 ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter; SMART: ATPase AAA; cyclic nucleotide-binding protein complement(1425605..1427809) Desulfovibrio vulgaris str. 'Miyazaki F' 7173062 YP_002435583.1 CDS DvMF_1161 NC_011769.1 1429589 1437202 D PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 hemagglutinin/hemolysin-related protein; hemolysin-type calcium-binding protein 1429589..1437202 Desulfovibrio vulgaris str. 'Miyazaki F' 7173063 YP_002435584.1 CDS DvMF_1162 NC_011769.1 1437322 1438047 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_3101 ABC transporter; ABC transporter complement(1437322..1438047) Desulfovibrio vulgaris str. 'Miyazaki F' 7173064 YP_002435585.1 CDS DvMF_1163 NC_011769.1 1438047 1438814 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_3102 ABC transporter; ABC transporter complement(1438047..1438814) Desulfovibrio vulgaris str. 'Miyazaki F' 7173065 YP_002435586.1 CDS DvMF_1164 NC_011769.1 1438827 1439903 R PFAM: inner-membrane translocator; KEGG: sfu:Sfum_3103 inner-membrane translocator; inner-membrane translocator complement(1438827..1439903) Desulfovibrio vulgaris str. 'Miyazaki F' 7173066 YP_002435587.1 CDS DvMF_1165 NC_011769.1 1439934 1440854 R PFAM: inner-membrane translocator; KEGG: sfu:Sfum_3104 inner-membrane translocator; inner-membrane translocator complement(1439934..1440854) Desulfovibrio vulgaris str. 'Miyazaki F' 7173067 YP_002435588.1 CDS DvMF_1166 NC_011769.1 1441140 1442303 R PFAM: extracellular ligand-binding receptor; KEGG: sfu:Sfum_3105 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1441140..1442303) Desulfovibrio vulgaris str. 'Miyazaki F' 7173068 YP_002435589.1 CDS DvMF_1168 NC_011769.1 1442677 1443600 D KEGG: bha:BH2071 hypothetical protein; diaminopimelate epimerase-like protein 1442677..1443600 Desulfovibrio vulgaris str. 'Miyazaki F' 7173070 YP_002435590.1 CDS DvMF_1169 NC_011769.1 1443829 1446888 D KEGG: sfu:Sfum_3176 hypothetical protein; hypothetical protein 1443829..1446888 Desulfovibrio vulgaris str. 'Miyazaki F' 7173071 YP_002435591.1 CDS DvMF_1170 NC_011769.1 1447299 1448294 D PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mag:amb4555 NADPH:quinone reductase and related Zn-dependent oxidoreductase; alcohol dehydrogenase zinc-binding domain protein 1447299..1448294 Desulfovibrio vulgaris str. 'Miyazaki F' 7173072 YP_002435592.1 CDS DvMF_1171 NC_011769.1 1448325 1449098 R TIGRFAM: C_GCAxxG_C_C family protein; KEGG: amt:Amet_3720 C_GCAxxG_C_C family protein; C_GCAxxG_C_C family protein complement(1448325..1449098) Desulfovibrio vulgaris str. 'Miyazaki F' 7173073 YP_002435593.1 CDS DvMF_1172 NC_011769.1 1449223 1449744 R PFAM: rhodanese; KEGG: dde:Dde_0806 rhodanese-like protein; rhodanese complement(1449223..1449744) Desulfovibrio vulgaris str. 'Miyazaki F' 7173074 YP_002435594.1 CDS DvMF_1173 NC_011769.1 1449893 1450369 R KEGG: dde:Dde_0805 hypothetical protein; hypothetical protein complement(1449893..1450369) Desulfovibrio vulgaris str. 'Miyazaki F' 7173075 YP_002435595.1 CDS DvMF_1174 NC_011769.1 1450710 1452059 D PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: dde:Dde_0804 cobalamin biosynthesis protein CbiD; cobalamin (vitamin B12) biosynthesis CbiD protein 1450710..1452059 Desulfovibrio vulgaris str. 'Miyazaki F' 7173076 YP_002435596.1 CDS DvMF_1175 NC_011769.1 1452056 1453480 D TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; protein of unknown function methylase KEGG: dde:Dde_0803 precorrin-6Y C5,15-methyltransferase (decarboxylating); precorrin-6y C5,15-methyltransferase subunit CbiE 1452056..1453480 Desulfovibrio vulgaris str. 'Miyazaki F' 7173077 YP_002435597.1 CDS DvMF_1176 NC_011769.1 1453477 1454415 D PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein; family 3 extracellular solute-binding protein 1453477..1454415 Desulfovibrio vulgaris str. 'Miyazaki F' 7173078 YP_002435598.1 CDS DvMF_1177 NC_011769.1 1454396 1455313 D KEGG: dde:Dde_0801 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase 1454396..1455313 Desulfovibrio vulgaris str. 'Miyazaki F' 7173079 YP_002435599.1 CDS DvMF_1178 NC_011769.1 1455576 1457303 D PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pna:Pnap_4517 bilirubin oxidase; multicopper oxidase type 3 1455576..1457303 Desulfovibrio vulgaris str. 'Miyazaki F' 7173080 YP_002435600.1 CDS DvMF_1179 NC_011769.1 1457287 1458444 D PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein; family 3 extracellular solute-binding protein 1457287..1458444 Desulfovibrio vulgaris str. 'Miyazaki F' 7173081 YP_002435601.1 CDS DvMF_1180 NC_011769.1 1458669 1459139 R KEGG: sfu:Sfum_0282 hypothetical protein; hypothetical protein complement(1458669..1459139) Desulfovibrio vulgaris str. 'Miyazaki F' 7173082 YP_002435602.1 CDS glmU NC_011769.1 1459485 1460852 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 1459485..1460852 Desulfovibrio vulgaris str. 'Miyazaki F' 7173083 YP_002435603.1 CDS DvMF_1182 NC_011769.1 1460884 1461120 D KEGG: dde:Dde_0980 hypothetical protein; hypothetical protein 1460884..1461120 Desulfovibrio vulgaris str. 'Miyazaki F' 7173084 YP_002435604.1 CDS DvMF_1183 NC_011769.1 1461136 1461399 D KEGG: dde:Dde_0979 hypothetical protein; hypothetical protein 1461136..1461399 Desulfovibrio vulgaris str. 'Miyazaki F' 7173085 YP_002435605.1 CDS DvMF_1184 NC_011769.1 1461889 1463448 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1461889..1463448 Desulfovibrio vulgaris str. 'Miyazaki F' 7173087 YP_002435606.1 CDS DvMF_1185 NC_011769.1 1463957 1464730 R PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein; family 3 extracellular solute-binding protein complement(1463957..1464730) Desulfovibrio vulgaris str. 'Miyazaki F' 7173088 YP_002435607.1 CDS DvMF_1187 NC_011769.1 1464927 1465820 R PFAM: protein of unknown function DUF191; KEGG: dde:Dde_0799 hypothetical protein; hypothetical protein complement(1464927..1465820) Desulfovibrio vulgaris str. 'Miyazaki F' 7173090 YP_002435608.1 CDS DvMF_1188 NC_011769.1 1466201 1467364 D PFAM: radical SAM protein; KEGG: dde:Dde_0798 hypothetical protein; radical SAM protein 1466201..1467364 Desulfovibrio vulgaris str. 'Miyazaki F' 7173091 YP_002435609.1 CDS DvMF_1189 NC_011769.1 1467361 1468521 D PFAM: radical SAM protein; KEGG: dde:Dde_0797 hypothetical protein; radical SAM protein 1467361..1468521 Desulfovibrio vulgaris str. 'Miyazaki F' 7173092 YP_002435610.1 CDS DvMF_1190 NC_011769.1 1468824 1469678 D PFAM: protein of unknown function DUF178; KEGG: dde:Dde_0796 hypothetical protein; hypothetical protein 1468824..1469678 Desulfovibrio vulgaris str. 'Miyazaki F' 7173093 YP_002435611.1 CDS DvMF_1191 NC_011769.1 1469733 1470872 D KEGG: lch:Lcho_1827 hypothetical protein; hypothetical protein 1469733..1470872 Desulfovibrio vulgaris str. 'Miyazaki F' 7173094 YP_002435612.1 CDS DvMF_1192 NC_011769.1 1471077 1471262 R hypothetical protein complement(1471077..1471262) Desulfovibrio vulgaris str. 'Miyazaki F' 7173095 YP_002435613.1 CDS DvMF_1193 NC_011769.1 1471305 1472309 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0791 hypothetical protein; hypothetical protein complement(1471305..1472309) Desulfovibrio vulgaris str. 'Miyazaki F' 7173096 YP_002435614.1 CDS DvMF_1194 NC_011769.1 1472582 1473187 R PFAM: GrpE protein; KEGG: dde:Dde_1025 heat shock protein GrpE; GrpE protein HSP-70 cofactor complement(1472582..1473187) Desulfovibrio vulgaris str. 'Miyazaki F' 7173097 YP_002435615.1 CDS DvMF_1195 NC_011769.1 1473288 1474355 R TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: negative regulator of class I heat shock protein; KEGG: dde:Dde_1026 heat-inducible transcription repressor HrcA; heat-inducible transcription repressor HrcA complement(1473288..1474355) Desulfovibrio vulgaris str. 'Miyazaki F' 7173098 YP_002435616.1 CDS DvMF_1196 NC_011769.1 1475308 1475625 D TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: dde:Dde_0762 dissimilatory sulfite reductase, subunit gamma; TusE/DsrC/DsvC family sulfur relay protein 1475308..1475625 Desulfovibrio vulgaris str. 'Miyazaki F' 7173099 YP_002435617.1 CDS DvMF_1197 NC_011769.1 1475935 1476207 R KEGG: dde:Dde_0761 hypothetical protein; hypothetical protein complement(1475935..1476207) Desulfovibrio vulgaris str. 'Miyazaki F' 7173100 YP_002435618.1 CDS DvMF_1199 NC_011769.1 1477007 1478299 R PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_0759 hypothetical protein; ABC transporter substrate-binding protein complement(1477007..1478299) Desulfovibrio vulgaris str. 'Miyazaki F' 7173102 YP_002435619.1 CDS DvMF_1200 NC_011769.1 1478460 1479596 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dde:Dde_0754 TRAP-type C4-dicarboxylate transporter periplasmic component-like; TRAP dicarboxylate transporter- DctP subunit complement(1478460..1479596) Desulfovibrio vulgaris str. 'Miyazaki F' 7173103 YP_002435620.1 CDS DvMF_1201 NC_011769.1 1479748 1480611 R PFAM: protein of unknown function DUF161; KEGG: dol:Dole_2543 hypothetical protein; hypothetical protein complement(1479748..1480611) Desulfovibrio vulgaris str. 'Miyazaki F' 7173104 YP_002435621.1 CDS DvMF_1202 NC_011769.1 1481117 1481743 R hypothetical protein complement(1481117..1481743) Desulfovibrio vulgaris str. 'Miyazaki F' 7173105 YP_002435622.1 CDS DvMF_1203 NC_011769.1 1481969 1482766 R PFAM: protein of unknown function DUF81; KEGG: gme:Gmet_1097 protein of unknown function DUF81; hypothetical protein complement(1481969..1482766) Desulfovibrio vulgaris str. 'Miyazaki F' 7173106 YP_002435623.1 CDS DvMF_1204 NC_011769.1 1482977 1483996 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: dde:Dde_0750 FMN-dependent family dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase complement(1482977..1483996) Desulfovibrio vulgaris str. 'Miyazaki F' 7173107 YP_002435624.1 CDS DvMF_1205 NC_011769.1 1484175 1484891 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dde:Dde_0749 GntR family transcriptional regulator; GntR family transcriptional regulator complement(1484175..1484891) Desulfovibrio vulgaris str. 'Miyazaki F' 7173108 YP_002435625.1 CDS DvMF_1206 NC_011769.1 1485341 1485937 R KEGG: ana:alr2112 unknown protein; hypothetical protein complement(1485341..1485937) Desulfovibrio vulgaris str. 'Miyazaki F' 7173109 YP_002435626.1 CDS DvMF_1207 NC_011769.1 1485961 1486482 R PFAM: regulatory protein ArsR; KEGG: dde:Dde_0747 ArsR family transcriptional regulator; ArsR family transcriptional regulator complement(1485961..1486482) Desulfovibrio vulgaris str. 'Miyazaki F' 7173110 YP_002435627.1 CDS DvMF_1208 NC_011769.1 1486679 1487218 R PFAM: CheW domain protein; KEGG: glo:Glov_1734 CheW protein; chemotaxis protein CheW complement(1486679..1487218) Desulfovibrio vulgaris str. 'Miyazaki F' 7173111 YP_002435628.1 CDS DvMF_1209 NC_011769.1 1487506 1489485 R PFAM: chemotaxis sensory transducer; KEGG: mgm:Mmc1_3308 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1487506..1489485) Desulfovibrio vulgaris str. 'Miyazaki F' 7173112 YP_002435629.1 CDS DvMF_1210 NC_011769.1 1489778 1490086 R KEGG: dde:Dde_0743 hypothetical protein; hypothetical protein complement(1489778..1490086) Desulfovibrio vulgaris str. 'Miyazaki F' 7173113 YP_002435630.1 CDS DvMF_1211 NC_011769.1 1490370 1490801 R KEGG: dde:Dde_0323 response regulator receiver domain-containing protein; response regulator receiver protein complement(1490370..1490801) Desulfovibrio vulgaris str. 'Miyazaki F' 7173114 YP_002435631.1 CDS DvMF_1212 NC_011769.1 1491425 1491820 R KEGG: dde:Dde_0319 hypothetical protein; hypothetical protein complement(1491425..1491820) Desulfovibrio vulgaris str. 'Miyazaki F' 7173115 YP_002435632.1 CDS DvMF_1213 NC_011769.1 1491817 1493421 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; hypothetical protein; SMART: AAA ATPase; KEGG: dde:Dde_0318 Fis family transcriptional regulator; Fis family transcriptional regulator complement(1491817..1493421) Desulfovibrio vulgaris str. 'Miyazaki F' 7173116 YP_002435633.1 CDS DvMF_1214 NC_011769.1 1493709 1495361 D PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_0218 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1493709..1495361 Desulfovibrio vulgaris str. 'Miyazaki F' 7173117 YP_002435634.1 CDS DvMF_1215 NC_011769.1 1496241 1496951 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; Fe-S cluster domain protein; KEGG: dde:Dde_0719 molybdopterin-guanine dinucleotide biosynthesis protein-like; molybdopterin-guanine dinucleotide biosynthesis protein MobB complement(1496241..1496951) Desulfovibrio vulgaris str. 'Miyazaki F' 7173118 YP_002435635.1 CDS DvMF_1216 NC_011769.1 1497326 1498033 R KEGG: dde:Dde_0718 formate dehydrogenase subunit beta; formate dehydrogenase subunit beta complement(1497326..1498033) Desulfovibrio vulgaris str. 'Miyazaki F' 7173119 YP_002435636.1 CDS DvMF_1217 NC_011769.1 1498036 1501062 R KEGG: dde:Dde_0813 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, subunit alpha; Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; formate dehydrogenase subunit alpha complement(1498036..1501062) Desulfovibrio vulgaris str. 'Miyazaki F' 7173120 YP_002435637.1 CDS DvMF_1218 NC_011769.1 1501137 1501373 R KEGG: dde:Dde_0715 hypothetical protein; hypothetical protein complement(1501137..1501373) Desulfovibrio vulgaris str. 'Miyazaki F' 7173121 YP_002435638.1 CDS DvMF_1219 NC_011769.1 1501977 1502900 R KEGG: dde:Dde_0714 transposase; transposase complement(1501977..1502900) Desulfovibrio vulgaris str. 'Miyazaki F' 7173122 YP_002435639.1 CDS DvMF_1220 NC_011769.1 1503023 1503805 R PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_0713 hypothetical protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(1503023..1503805) Desulfovibrio vulgaris str. 'Miyazaki F' 7173123 YP_002435640.1 CDS DvMF_1221 NC_011769.1 1504235 1505653 D PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0712 lipoprotein; extracellular ligand-binding receptor 1504235..1505653 Desulfovibrio vulgaris str. 'Miyazaki F' 7173124 YP_002435641.1 CDS DvMF_1222 NC_011769.1 1505650 1507710 D KEGG: dde:Dde_0711 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1505650..1507710 Desulfovibrio vulgaris str. 'Miyazaki F' 7173125 YP_002435642.1 CDS DvMF_1223 NC_011769.1 1507691 1508506 D PFAM: response regulator receiver; sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_0710 response regulator receiver domain-containing protein; anti-sigma-factor antagonist 1507691..1508506 Desulfovibrio vulgaris str. 'Miyazaki F' 7173126 YP_002435643.1 CDS DvMF_1224 NC_011769.1 1508797 1509579 D PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: dde:Dde_0161 LytR/AlgR family transcriptional regulator; LytTR family transcriptional regulator 1508797..1509579 Desulfovibrio vulgaris str. 'Miyazaki F' 7173127 YP_002435644.1 CDS DvMF_1225 NC_011769.1 1509712 1511523 D PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: dde:Dde_0160 ATP-binding region, ATPase-like; signal transduction histidine kinase LytS 1509712..1511523 Desulfovibrio vulgaris str. 'Miyazaki F' 7173128 YP_002435645.1 CDS DvMF_1226 NC_011769.1 1511761 1513164 D PFAM: carbon starvation protein CstA; KEGG: afw:Anae109_4235 carbon starvation protein CstA; carbon starvation protein CstA 1511761..1513164 Desulfovibrio vulgaris str. 'Miyazaki F' 7173129 YP_002435646.1 CDS DvMF_1227 NC_011769.1 1513747 1515558 D PFAM: carbon starvation protein CstA; KEGG: gur:Gura_2790 carbon starvation protein CstA; carbon starvation protein CstA 1513747..1515558 Desulfovibrio vulgaris str. 'Miyazaki F' 7173130 YP_002435647.1 CDS DvMF_1229 NC_011769.1 1516587 1518005 D PFAM: carbon starvation protein CstA; KEGG: dde:Dde_0227 carbon starvation protein A; carbon starvation protein CstA 1516587..1518005 Desulfovibrio vulgaris str. 'Miyazaki F' 7173132 YP_002435648.1 CDS DvMF_1230 NC_011769.1 1518320 1519405 R KEGG: dde:Dde_0709 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: radical SAM domain protein; molybdenum cofactor synthesis protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A complement(1518320..1519405) Desulfovibrio vulgaris str. 'Miyazaki F' 7173133 YP_002435649.1 CDS DvMF_1231 NC_011769.1 1519531 1520403 R KEGG: dde:Dde_0708 molybdopterin-guanine dinucleotide biosynthesis protein A; Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein complement(1519531..1520403) Desulfovibrio vulgaris str. 'Miyazaki F' 7173134 YP_002435650.1 CDS DvMF_1232 NC_011769.1 1520400 1521224 R KEGG: dde:Dde_0707 formate dehydrogenase accessory protein FdhD; formate dehydrogenase accessory protein FdhD complement(1520400..1521224) Desulfovibrio vulgaris str. 'Miyazaki F' 7173135 YP_002435651.1 CDS DvMF_1233 NC_011769.1 1521224 1522135 R PFAM: formate dehydrogenase accessory protein; KEGG: dde:Dde_0706 formate dehydrogenase formation protein FdhE; formate dehydrogenase accessory protein complement(1521224..1522135) Desulfovibrio vulgaris str. 'Miyazaki F' 7173136 YP_002435652.1 CDS DvMF_1234 NC_011769.1 1522581 1523453 D TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; KEGG: rca:Rcas_3054 methionine-R-sulfoxide reductase; methionine-R-sulfoxide reductase 1522581..1523453 Desulfovibrio vulgaris str. 'Miyazaki F' 7173137 YP_002435653.1 CDS DvMF_1235 NC_011769.1 1523509 1523808 D KEGG: pin:Ping_2581 hypothetical protein; hypothetical protein 1523509..1523808 Desulfovibrio vulgaris str. 'Miyazaki F' 7173138 YP_002435654.1 CDS DvMF_1236 NC_011769.1 1523943 1524692 R KEGG: sfu:Sfum_4078 hypothetical protein; hypothetical protein complement(1523943..1524692) Desulfovibrio vulgaris str. 'Miyazaki F' 7173139 YP_002435655.1 CDS DvMF_1237 NC_011769.1 1524997 1525536 R PFAM: CreA family protein; KEGG: dar:Daro_1905 CreA; CreA family protein complement(1524997..1525536) Desulfovibrio vulgaris str. 'Miyazaki F' 7173140 YP_002435656.1 CDS DvMF_1238 NC_011769.1 1525635 1527209 R KEGG: sfu:Sfum_1332 spermine synthase; spermine synthase complement(1525635..1527209) Desulfovibrio vulgaris str. 'Miyazaki F' 7173141 YP_002435657.1 CDS DvMF_1239 NC_011769.1 1527595 1527954 R PFAM: zinc finger DksA/TraR C4-type; KEGG: glo:Glov_0401 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator complement(1527595..1527954) Desulfovibrio vulgaris str. 'Miyazaki F' 7173142 YP_002435658.1 CDS DvMF_1240 NC_011769.1 1529261 1530277 D PFAM: integral membrane protein TerC; KEGG: sat:SYN_01926 tellurium resistance protein; integral membrane protein TerC 1529261..1530277 Desulfovibrio vulgaris str. 'Miyazaki F' 7173143 YP_002435659.1 CDS DvMF_1241 NC_011769.1 1530481 1530993 D PFAM: ferric-uptake regulator; KEGG: sfu:Sfum_1722 ferric uptake regulator, Fur family; Fur family ferric uptake regulator 1530481..1530993 Desulfovibrio vulgaris str. 'Miyazaki F' 7173144 YP_002435660.1 CDS DvMF_1242 NC_011769.1 1531306 1532748 D PFAM: catalase domain protein; KEGG: har:HEAR1200 catalase (hydroperoxidase II); catalase 1531306..1532748 Desulfovibrio vulgaris str. 'Miyazaki F' 7173145 YP_002435661.1 CDS DvMF_1243 NC_011769.1 1533044 1535248 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_1071 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase complement(1533044..1535248) Desulfovibrio vulgaris str. 'Miyazaki F' 7173146 YP_002435662.1 CDS DvMF_1244 NC_011769.1 1535338 1536393 R KEGG: ppd:Ppro_1141 hypothetical protein; hypothetical protein complement(1535338..1536393) Desulfovibrio vulgaris str. 'Miyazaki F' 7173147 YP_002435663.1 CDS DvMF_1245 NC_011769.1 1536607 1539450 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mth:MTH1567 catalytic subunit of nitrate reductase (flp); molybdopterin oxidoreductase complement(1536607..1539450) Desulfovibrio vulgaris str. 'Miyazaki F' 7173148 YP_002435664.1 CDS DvMF_1246 NC_011769.1 1539988 1541214 D PFAM: D-alanine--D-alanine ligase domain protein; KEGG: sru:SRU_2197 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 1539988..1541214 Desulfovibrio vulgaris str. 'Miyazaki F' 7173149 YP_002435665.1 CDS DvMF_1247 NC_011769.1 1541573 1542517 D PFAM: alpha/beta hydrolase fold; KEGG: tte:TTE2547 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold protein 1541573..1542517 Desulfovibrio vulgaris str. 'Miyazaki F' 7173150 YP_002435666.1 CDS DvMF_1248 NC_011769.1 1542510 1544150 D PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tme:Tmel_0488 Mur ligase middle domain-containing protein; Mur ligase middle domain-containing protein 1542510..1544150 Desulfovibrio vulgaris str. 'Miyazaki F' 7173151 YP_002435667.1 CDS DvMF_1249 NC_011769.1 1544351 1545502 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gdi:GDI3707 GGDEF family signaling protein; diguanylate cyclase 1544351..1545502 Desulfovibrio vulgaris str. 'Miyazaki F' 7173152 YP_002435668.1 CDS DvMF_1250 NC_011769.1 1545595 1546176 D PFAM: cupin; KEGG: vha:VIBHAR_02199 hypothetical protein; cupin 1545595..1546176 Desulfovibrio vulgaris str. 'Miyazaki F' 7173153 YP_002435669.1 CDS DvMF_1251 NC_011769.1 1546455 1549760 D KEGG: glo:Glov_0558 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 1546455..1549760 Desulfovibrio vulgaris str. 'Miyazaki F' 7173154 YP_002435670.1 CDS DvMF_1252 NC_011769.1 1549883 1550725 R PFAM: ethanolamine ammonia-lyase light chain; KEGG: pen:PSEEN0631 ethanolamine ammonia-lyase small subunit; ethanolamine ammonia-lyase complement(1549883..1550725) Desulfovibrio vulgaris str. 'Miyazaki F' 7173155 YP_002435671.1 CDS DvMF_1253 NC_011769.1 1550737 1552095 R PFAM: ethanolamine ammonia lyase large subunit; KEGG: psa:PST_3681 ethanolamine ammonia-lyase large subunit; ethanolamine ammonia lyase large subunit complement(1550737..1552095) Desulfovibrio vulgaris str. 'Miyazaki F' 7173156 YP_002435672.1 CDS DvMF_1255 NC_011769.1 1552620 1553702 D PFAM: conserved hypothetical protein; KEGG: drm:Dred_1861 conserved hypothetical protein 698; hypothetical protein 1552620..1553702 Desulfovibrio vulgaris str. 'Miyazaki F' 7173158 YP_002435673.1 CDS DvMF_1256 NC_011769.1 1553719 1553817 D hypothetical protein 1553719..1553817 Desulfovibrio vulgaris str. 'Miyazaki F' 7173159 YP_002435674.1 CDS DvMF_1257 NC_011769.1 1553885 1554328 D KEGG: drm:Dred_1860 UspA domain protein; hypothetical protein 1553885..1554328 Desulfovibrio vulgaris str. 'Miyazaki F' 7173160 YP_002435675.1 CDS DvMF_1258 NC_011769.1 1554829 1555737 D TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: glo:Glov_1153 phosphonate ABC transporter periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 1554829..1555737 Desulfovibrio vulgaris str. 'Miyazaki F' 7173161 YP_002435676.1 CDS DvMF_1259 NC_011769.1 1555740 1557257 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: gur:Gura_3624 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1555740..1557257 Desulfovibrio vulgaris str. 'Miyazaki F' 7173162 YP_002435677.1 CDS DvMF_1260 NC_011769.1 1557254 1558612 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: gme:Gmet_2453 two component, sigma54 specific, transcriptional regulator, Fis family; Fis family transcriptional regulator 1557254..1558612 Desulfovibrio vulgaris str. 'Miyazaki F' 7173163 YP_002435678.1 CDS DvMF_1261 NC_011769.1 1558929 1559639 R PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: lip:LI0836 predicted transcriptional regulator; phage repressor complement(1558929..1559639) Desulfovibrio vulgaris str. 'Miyazaki F' 7173164 YP_002435679.1 CDS DvMF_1262 NC_011769.1 1559904 1560329 D KEGG: dde:Dde_3347 hypothetical protein; hypothetical protein 1559904..1560329 Desulfovibrio vulgaris str. 'Miyazaki F' 7173165 YP_002435680.1 CDS DvMF_1263 NC_011769.1 1560326 1560601 D KEGG: dde:Dde_3348 hypothetical protein; hypothetical protein 1560326..1560601 Desulfovibrio vulgaris str. 'Miyazaki F' 7173166 YP_002435681.1 CDS DvMF_1264 NC_011769.1 1560629 1562815 D PFAM: transposase-like Mu; KEGG: dde:Dde_3350 bacteriophage transposase A protein; transposase-like Mu 1560629..1562815 Desulfovibrio vulgaris str. 'Miyazaki F' 7173167 YP_002435682.1 CDS DvMF_1265 NC_011769.1 1562812 1563513 D KEGG: dde:Dde_3351 bacteriophage DNA transposition B protein; bacteriophage DNA transposition B protein 1562812..1563513 Desulfovibrio vulgaris str. 'Miyazaki F' 7173168 YP_002435683.1 CDS DvMF_1266 NC_011769.1 1563516 1564160 D KEGG: dde:Dde_3352 hypothetical protein; hypothetical protein 1563516..1564160 Desulfovibrio vulgaris str. 'Miyazaki F' 7173169 YP_002435684.1 CDS DvMF_1267 NC_011769.1 1564163 1564372 D hypothetical protein 1564163..1564372 Desulfovibrio vulgaris str. 'Miyazaki F' 7173170 YP_002435685.1 CDS DvMF_1268 NC_011769.1 1564372 1564881 D PFAM: Mu Gam family protein; KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam; Mu Gam family protein 1564372..1564881 Desulfovibrio vulgaris str. 'Miyazaki F' 7173171 YP_002435686.1 CDS DvMF_1269 NC_011769.1 1564898 1565188 D hypothetical protein 1564898..1565188 Desulfovibrio vulgaris str. 'Miyazaki F' 7173172 YP_002435687.1 CDS DvMF_1270 NC_011769.1 1565280 1565729 D KEGG: dde:Dde_3357 hypothetical protein; hypothetical protein 1565280..1565729 Desulfovibrio vulgaris str. 'Miyazaki F' 7173173 YP_002435688.1 CDS DvMF_1271 NC_011769.1 1565726 1566229 D KEGG: dde:Dde_3358 hypothetical protein; hypothetical protein 1565726..1566229 Desulfovibrio vulgaris str. 'Miyazaki F' 7173174 YP_002435689.1 CDS DvMF_1272 NC_011769.1 1566226 1566591 D KEGG: dde:Dde_3359 hypothetical protein; hypothetical protein 1566226..1566591 Desulfovibrio vulgaris str. 'Miyazaki F' 7173175 YP_002435690.1 CDS DvMF_1273 NC_011769.1 1566572 1567039 D KEGG: dde:Dde_3360 DNA-binding protein; DNA-binding protein 1566572..1567039 Desulfovibrio vulgaris str. 'Miyazaki F' 7173176 YP_002435691.1 CDS DvMF_1274 NC_011769.1 1567099 1568001 D KEGG: glo:Glov_1411 hypothetical protein; hypothetical protein 1567099..1568001 Desulfovibrio vulgaris str. 'Miyazaki F' 7173177 YP_002435692.1 CDS DvMF_1275 NC_011769.1 1568071 1568472 D KEGG: sgl:SG0829 hypothetical protein; hypothetical protein 1568071..1568472 Desulfovibrio vulgaris str. 'Miyazaki F' 7173178 YP_002435693.1 CDS DvMF_1276 NC_011769.1 1568472 1569143 D PFAM: lytic transglycosylase catalytic; KEGG: bbr:BB3638 lytic murein transglycosylase precursor; lytic transglycosylase 1568472..1569143 Desulfovibrio vulgaris str. 'Miyazaki F' 7173179 YP_002435694.1 CDS DvMF_1277 NC_011769.1 1569143 1569562 D KEGG: jan:Jann_1769 mucin-associated surface protein; hypothetical protein 1569143..1569562 Desulfovibrio vulgaris str. 'Miyazaki F' 7173180 YP_002435695.1 CDS DvMF_1278 NC_011769.1 1569516 1569797 D KEGG: mpa:MAP4242 hypothetical protein; hypothetical protein 1569516..1569797 Desulfovibrio vulgaris str. 'Miyazaki F' 7173181 YP_002435696.1 CDS DvMF_1279 NC_011769.1 1569794 1570288 D KEGG: sfu:Sfum_1873 hypothetical protein; hypothetical protein 1569794..1570288 Desulfovibrio vulgaris str. 'Miyazaki F' 7173182 YP_002435697.1 CDS DvMF_1280 NC_011769.1 1570285 1570527 D hypothetical protein 1570285..1570527 Desulfovibrio vulgaris str. 'Miyazaki F' 7173183 YP_002435698.1 CDS DvMF_1281 NC_011769.1 1570552 1571151 D KEGG: dde:Dde_3371 hypothetical protein; hypothetical protein 1570552..1571151 Desulfovibrio vulgaris str. 'Miyazaki F' 7173184 YP_002435699.1 CDS DvMF_1282 NC_011769.1 1571281 1572762 D KEGG: dde:Dde_3372 portal protein; portal protein 1571281..1572762 Desulfovibrio vulgaris str. 'Miyazaki F' 7173185 YP_002435700.1 CDS DvMF_1283 NC_011769.1 1572739 1573671 R KEGG: ecs:ECs3507 hypothetical protein; hypothetical protein complement(1572739..1573671) Desulfovibrio vulgaris str. 'Miyazaki F' 7173186 YP_002435701.1 CDS DvMF_1284 NC_011769.1 1574616 1576190 D PFAM: protein of unknown function DUF935; KEGG: dde:Dde_3373 hypothetical protein; hypothetical protein 1574616..1576190 Desulfovibrio vulgaris str. 'Miyazaki F' 7173187 YP_002435702.1 CDS DvMF_1285 NC_011769.1 1576192 1577493 D TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: head morphogenesis protein SPP1 gp7; KEGG: dde:Dde_3374 phage head morphogenesis protein, SPP1 gp7; phage head morphogenesis protein 1576192..1577493 Desulfovibrio vulgaris str. 'Miyazaki F' 7173188 YP_002435703.1 CDS DvMF_1286 NC_011769.1 1577634 1578614 D KEGG: dde:Dde_3375 hypothetical protein; hypothetical protein 1577634..1578614 Desulfovibrio vulgaris str. 'Miyazaki F' 7173189 YP_002435704.1 CDS DvMF_1287 NC_011769.1 1578633 1578980 D hypothetical protein 1578633..1578980 Desulfovibrio vulgaris str. 'Miyazaki F' 7173190 YP_002435705.1 CDS DvMF_1288 NC_011769.1 1578990 1579994 D KEGG: dde:Dde_3377 hypothetical protein; hypothetical protein 1578990..1579994 Desulfovibrio vulgaris str. 'Miyazaki F' 7173191 YP_002435706.1 CDS DvMF_1289 NC_011769.1 1580199 1580630 D PFAM: protein of unknown function DUF1320; KEGG: dde:Dde_3378 hypothetical protein; hypothetical protein 1580199..1580630 Desulfovibrio vulgaris str. 'Miyazaki F' 7173192 YP_002435707.1 CDS DvMF_1290 NC_011769.1 1580773 1581219 D TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis ( tail completion) protein; KEGG: dde:Dde_3379 phage virion morphogenesis ( tail completion) protein; phage virion morphogenesis protein 1580773..1581219 Desulfovibrio vulgaris str. 'Miyazaki F' 7173193 YP_002435708.1 CDS DvMF_1291 NC_011769.1 1581216 1581752 D KEGG: dde:Dde_3380 hypothetical protein; hypothetical protein 1581216..1581752 Desulfovibrio vulgaris str. 'Miyazaki F' 7173194 YP_002435709.1 CDS DvMF_1292 NC_011769.1 1581754 1582179 D KEGG: eci:UTI89_C5135 hypothetical protein; hypothetical protein 1581754..1582179 Desulfovibrio vulgaris str. 'Miyazaki F' 7173195 YP_002435710.1 CDS DvMF_1293 NC_011769.1 1582195 1583880 D KEGG: dde:Dde_3382 hypothetical protein; hypothetical protein 1582195..1583880 Desulfovibrio vulgaris str. 'Miyazaki F' 7173196 YP_002435711.1 CDS DvMF_1294 NC_011769.1 1583890 1584360 D KEGG: dde:Dde_3383 hypothetical protein; hypothetical protein 1583890..1584360 Desulfovibrio vulgaris str. 'Miyazaki F' 7173197 YP_002435712.1 CDS DvMF_1295 NC_011769.1 1585244 1586284 D hypothetical protein 1585244..1586284 Desulfovibrio vulgaris str. 'Miyazaki F' 7173198 YP_002435713.1 CDS DvMF_1296 NC_011769.1 1586463 1586819 D hypothetical protein 1586463..1586819 Desulfovibrio vulgaris str. 'Miyazaki F' 7173199 YP_002435714.1 CDS DvMF_1297 NC_011769.1 1586867 1587004 D hypothetical protein 1586867..1587004 Desulfovibrio vulgaris str. 'Miyazaki F' 7173200 YP_002435715.1 CDS DvMF_1298 NC_011769.1 1587062 1589407 D TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: sew:SeSA_A4475 tail protein; phage tail tape measure protein, TP901 family 1587062..1589407 Desulfovibrio vulgaris str. 'Miyazaki F' 7173201 YP_002435716.1 CDS DvMF_1299 NC_011769.1 1589404 1589949 D KEGG: dde:Dde_3387 hypothetical protein; hypothetical protein 1589404..1589949 Desulfovibrio vulgaris str. 'Miyazaki F' 7173202 YP_002435717.1 CDS DvMF_1300 NC_011769.1 1589949 1590749 D KEGG: dde:Dde_3388 hypothetical protein; hypothetical protein 1589949..1590749 Desulfovibrio vulgaris str. 'Miyazaki F' 7173203 YP_002435718.1 CDS DvMF_1301 NC_011769.1 1590736 1591461 D KEGG: dde:Dde_3389 baseplate assembly protein; baseplate assembly protein 1590736..1591461 Desulfovibrio vulgaris str. 'Miyazaki F' 7173204 YP_002435719.1 CDS DvMF_1302 NC_011769.1 1592003 1592437 D KEGG: dde:Dde_3390 baseplate assembly protein; baseplate assembly protein 1592003..1592437 Desulfovibrio vulgaris str. 'Miyazaki F' 7173205 YP_002435720.1 CDS DvMF_1303 NC_011769.1 1592415 1593587 D KEGG: dde:Dde_3391 baseplate assembly protein; baseplate assembly protein 1592415..1593587 Desulfovibrio vulgaris str. 'Miyazaki F' 7173206 YP_002435721.1 CDS DvMF_1304 NC_011769.1 1593588 1594259 D KEGG: dde:Dde_3392 hypothetical protein; hypothetical protein 1593588..1594259 Desulfovibrio vulgaris str. 'Miyazaki F' 7173207 YP_002435722.1 CDS DvMF_1305 NC_011769.1 1594256 1595773 D KEGG: dde:Dde_3393 tail fiber protein; tail fiber protein 1594256..1595773 Desulfovibrio vulgaris str. 'Miyazaki F' 7173208 YP_002435723.1 CDS DvMF_1306 NC_011769.1 1595784 1596242 D KEGG: dde:Dde_3394 hypothetical protein; hypothetical protein 1595784..1596242 Desulfovibrio vulgaris str. 'Miyazaki F' 7173209 YP_002435724.1 CDS DvMF_1307 NC_011769.1 1596523 1596708 D KEGG: dde:Dde_3395 hypothetical protein; hypothetical protein 1596523..1596708 Desulfovibrio vulgaris str. 'Miyazaki F' 7173210 YP_002435725.1 CDS DvMF_1308 NC_011769.1 1596692 1597453 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dde:Dde_1300 adenine specific DNA methyltransferase; DNA methylase N-4/N-6 domain-containing protein 1596692..1597453 Desulfovibrio vulgaris str. 'Miyazaki F' 7173211 YP_002435726.1 CDS DvMF_1309 NC_011769.1 1597531 1598331 R KEGG: ncr:NCU07561 hypothetical protein; hypothetical protein complement(1597531..1598331) Desulfovibrio vulgaris str. 'Miyazaki F' 7173212 YP_002435727.1 CDS DvMF_1310 NC_011769.1 1599296 1600795 D KEGG: dde:Dde_3058 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1599296..1600795 Desulfovibrio vulgaris str. 'Miyazaki F' 7173214 YP_002435728.1 CDS DvMF_1311 NC_011769.1 1600841 1602361 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1600841..1602361 Desulfovibrio vulgaris str. 'Miyazaki F' 7173215 YP_002435729.1 CDS DvMF_1312 NC_011769.1 1602444 1603436 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_3060 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 1602444..1603436 Desulfovibrio vulgaris str. 'Miyazaki F' 7173216 YP_002435730.1 CDS DvMF_1313 NC_011769.1 1603542 1604411 R KEGG: dde:Dde_3758 hypothetical protein; hypothetical protein complement(1603542..1604411) Desulfovibrio vulgaris str. 'Miyazaki F' 7173217 YP_002435731.1 CDS DvMF_1314 NC_011769.1 1604743 1606194 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1604743..1606194 Desulfovibrio vulgaris str. 'Miyazaki F' 7173218 YP_002435732.1 CDS DvMF_1315 NC_011769.1 1606478 1607659 D PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3062 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 1606478..1607659 Desulfovibrio vulgaris str. 'Miyazaki F' 7173219 YP_002435733.1 CDS DvMF_1316 NC_011769.1 1608412 1609479 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_1135 hypothetical protein; hypothetical protein 1608412..1609479 Desulfovibrio vulgaris str. 'Miyazaki F' 7173220 YP_002435734.1 CDS DvMF_1317 NC_011769.1 1609604 1610359 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2953 ATPase; ABC transporter complement(1609604..1610359) Desulfovibrio vulgaris str. 'Miyazaki F' 7173221 YP_002435735.1 CDS DvMF_1318 NC_011769.1 1610356 1610925 R PFAM: BioY protein; KEGG: dde:Dde_2954 BioY family protein; BioY protein complement(1610356..1610925) Desulfovibrio vulgaris str. 'Miyazaki F' 7173222 YP_002435736.1 CDS DvMF_1319 NC_011769.1 1611309 1612091 D PFAM: Lipocalin; KEGG: dde:Dde_2955 hypothetical protein; Lipocalin 1611309..1612091 Desulfovibrio vulgaris str. 'Miyazaki F' 7173223 YP_002435737.1 CDS DvMF_1320 NC_011769.1 1612320 1612739 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 1612320..1612739 Desulfovibrio vulgaris str. 'Miyazaki F' 7173224 YP_002435738.1 CDS DvMF_1321 NC_011769.1 1612758 1613537 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 1612758..1613537 Desulfovibrio vulgaris str. 'Miyazaki F' 7173225 YP_002435739.1 CDS DvMF_1322 NC_011769.1 1613796 1614206 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_2958 flagellar basal-body rod protein; hypothetical protein 1613796..1614206 Desulfovibrio vulgaris str. 'Miyazaki F' 7173226 YP_002435740.1 CDS DvMF_1323 NC_011769.1 1614584 1615597 R PFAM: Auxin Efflux Carrier; KEGG: dde:Dde_0880 hypothetical protein; auxin efflux carrier family protein complement(1614584..1615597) Desulfovibrio vulgaris str. 'Miyazaki F' 7173227 YP_002435741.1 CDS DvMF_1324 NC_011769.1 1616435 1617487 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: dde:Dde_2959 Fis family transcriptional regulator; Fis family transcriptional regulator 1616435..1617487 Desulfovibrio vulgaris str. 'Miyazaki F' 7173228 YP_002435742.1 CDS DvMF_1325 NC_011769.1 1617695 1621063 D PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_2960 TPR repeat-containing protein; hypothetical protein 1617695..1621063 Desulfovibrio vulgaris str. 'Miyazaki F' 7173229 YP_002435743.1 CDS DvMF_1326 NC_011769.1 1621300 1622148 D PFAM: protein of unknown function DUF52; KEGG: dde:Dde_2961 hypothetical protein; hypothetical protein 1621300..1622148 Desulfovibrio vulgaris str. 'Miyazaki F' 7173230 YP_002435744.1 CDS DvMF_1327 NC_011769.1 1622511 1623554 D KEGG: mma:MM_1125 hypothetical protein; hypothetical protein 1622511..1623554 Desulfovibrio vulgaris str. 'Miyazaki F' 7173231 YP_002435745.1 CDS DvMF_1328 NC_011769.1 1623700 1623909 R KEGG: dde:Dde_2375 heavy metal-binding domain-containing protein; heavy metal-binding domain-containing protein complement(1623700..1623909) Desulfovibrio vulgaris str. 'Miyazaki F' 7173232 YP_002435746.1 CDS DvMF_1329 NC_011769.1 1624200 1624493 D KEGG: dde:Dde_2377 hypothetical protein; hypothetical protein 1624200..1624493 Desulfovibrio vulgaris str. 'Miyazaki F' 7173233 YP_002435747.1 CDS DvMF_1330 NC_011769.1 1624569 1626005 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1624569..1626005 Desulfovibrio vulgaris str. 'Miyazaki F' 7173234 YP_002435748.1 CDS DvMF_1331 NC_011769.1 1626176 1626904 D PFAM: protein of unknown function DUF151; KEGG: dde:Dde_2379 hypothetical protein; hypothetical protein 1626176..1626904 Desulfovibrio vulgaris str. 'Miyazaki F' 7173235 YP_002435749.1 CDS DvMF_1332 NC_011769.1 1627463 1628122 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pca:Pcar_1215 hypothetical protein; hypothetical protein 1627463..1628122 Desulfovibrio vulgaris str. 'Miyazaki F' 7173236 YP_002435750.1 CDS DvMF_1333 NC_011769.1 1628407 1628994 D KEGG: dde:Dde_2382 hypothetical protein; hypothetical protein 1628407..1628994 Desulfovibrio vulgaris str. 'Miyazaki F' 7173237 YP_002435751.1 CDS DvMF_1334 NC_011769.1 1629160 1630653 D PFAM: response regulator receiver; KEGG: dde:Dde_2384 response regulator receiver domain-containing protein; response regulator receiver protein 1629160..1630653 Desulfovibrio vulgaris str. 'Miyazaki F' 7173238 YP_002435752.1 CDS DvMF_1335 NC_011769.1 1630797 1631336 R PFAM: protein of unknown function DUF615; KEGG: dde:Dde_1395 hypothetical protein; hypothetical protein complement(1630797..1631336) Desulfovibrio vulgaris str. 'Miyazaki F' 7173239 YP_002435753.1 CDS DvMF_1336 NC_011769.1 1631516 1631998 R KEGG: dde:Dde_1393 hypothetical protein; hypothetical protein complement(1631516..1631998) Desulfovibrio vulgaris str. 'Miyazaki F' 7173240 YP_002435754.1 CDS DvMF_1337 NC_011769.1 1632063 1632923 R TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dde:Dde_1392 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyltransferase complement(1632063..1632923) Desulfovibrio vulgaris str. 'Miyazaki F' 7173241 YP_002435755.1 CDS DvMF_1338 NC_011769.1 1632955 1634310 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1391 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(1632955..1634310) Desulfovibrio vulgaris str. 'Miyazaki F' 7173242 YP_002435756.1 CDS DvMF_1339 NC_011769.1 1634497 1635312 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: dde:Dde_1390 molybdopterin binding domain-containing protein; molybdenum cofactor synthesis protein complement(1634497..1635312) Desulfovibrio vulgaris str. 'Miyazaki F' 7173243 YP_002435757.1 CDS DvMF_1340 NC_011769.1 1635494 1635907 R KEGG: dde:Dde_1389 hypothetical protein; hypothetical protein complement(1635494..1635907) Desulfovibrio vulgaris str. 'Miyazaki F' 7173244 YP_002435758.1 CDS DvMF_1341 NC_011769.1 1636049 1636786 R PFAM: lysine exporter (LYSE/YGGA); KEGG: dde:Dde_1388 amino acid transporter LysE; lysine exporter protein LysE/YggA complement(1636049..1636786) Desulfovibrio vulgaris str. 'Miyazaki F' 7173245 YP_002435759.1 CDS DvMF_1342 NC_011769.1 1637224 1637955 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1387 ATPase; ABC transporter complement(1637224..1637955) Desulfovibrio vulgaris str. 'Miyazaki F' 7173246 YP_002435760.1 CDS DvMF_1343 NC_011769.1 1637952 1638965 R TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_1386 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein complement(1637952..1638965) Desulfovibrio vulgaris str. 'Miyazaki F' 7173247 YP_002435761.1 CDS DvMF_1344 NC_011769.1 1639431 1640249 R PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_1385 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(1639431..1640249) Desulfovibrio vulgaris str. 'Miyazaki F' 7173248 YP_002435762.1 CDS DvMF_1345 NC_011769.1 1640646 1640834 R KEGG: dde:Dde_1384 hypothetical protein; hypothetical protein complement(1640646..1640834) Desulfovibrio vulgaris str. 'Miyazaki F' 7173249 YP_002435763.1 CDS DvMF_1346 NC_011769.1 1641007 1644060 R PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: dde:Dde_1382 glutamate dehydrogenase (NAD); Glu/Leu/Phe/Val dehydrogenase complement(1641007..1644060) Desulfovibrio vulgaris str. 'Miyazaki F' 7173250 YP_002435764.1 CDS DvMF_1347 NC_011769.1 1644245 1644811 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1644245..1644811 Desulfovibrio vulgaris str. 'Miyazaki F' 7173251 YP_002435765.1 CDS DvMF_1348 NC_011769.1 1645096 1647441 R PFAM: OstA family protein; organic solvent tolerance protein; KEGG: dde:Dde_1413 organic solvent tolerance protein; organic solvent tolerance protein complement(1645096..1647441) Desulfovibrio vulgaris str. 'Miyazaki F' 7173252 YP_002435766.1 CDS DvMF_1349 NC_011769.1 1647728 1648846 D KEGG: lip:LI0034 alanine racemase, catabolic; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 1647728..1648846 Desulfovibrio vulgaris str. 'Miyazaki F' 7173253 YP_002435767.1 CDS rpsF NC_011769.1 1648991 1649296 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1648991..1649296 Desulfovibrio vulgaris str. 'Miyazaki F' 7173254 YP_002435768.1 CDS rpsR NC_011769.1 1649298 1649561 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1649298..1649561 Desulfovibrio vulgaris str. 'Miyazaki F' 7173255 YP_002435769.1 CDS rplI NC_011769.1 1649571 1650074 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1649571..1650074 Desulfovibrio vulgaris str. 'Miyazaki F' 7173256 YP_002435770.1 CDS DvMF_1353 NC_011769.1 1650157 1651509 D TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; KEGG: dde:Dde_1409 primary replicative DNA helicase; replicative DNA helicase 1650157..1651509 Desulfovibrio vulgaris str. 'Miyazaki F' 7173257 YP_002435771.1 CDS DvMF_1354 NC_011769.1 1652559 1656845 R PFAM: protein of unknown function DUF748; KEGG: dde:Dde_0225 hypothetical protein; hypothetical protein complement(1652559..1656845) Desulfovibrio vulgaris str. 'Miyazaki F' 7173258 YP_002435772.1 CDS DvMF_1355 NC_011769.1 1657098 1658600 R KEGG: ter:Tery_2034 RTX toxins and related Ca2+-binding protein; hypothetical protein complement(1657098..1658600) Desulfovibrio vulgaris str. 'Miyazaki F' 7173259 YP_002435773.1 CDS DvMF_1356 NC_011769.1 1658791 1659990 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(1658791..1659990) Desulfovibrio vulgaris str. 'Miyazaki F' 7173260 YP_002435774.1 CDS DvMF_1357 NC_011769.1 1660217 1661059 R PFAM: metallophosphoesterase; KEGG: dde:Dde_0229 hypothetical protein; metallophosphoesterase complement(1660217..1661059) Desulfovibrio vulgaris str. 'Miyazaki F' 7173261 YP_002435775.1 CDS DvMF_1358 NC_011769.1 1661162 1662460 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dde:Dde_0230 molybdopterin molybdochelatase; molybdenum cofactor synthesis protein complement(1661162..1662460) Desulfovibrio vulgaris str. 'Miyazaki F' 7173262 YP_002435776.1 CDS DvMF_1359 NC_011769.1 1663045 1663962 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1146 hypothetical protein; hypothetical protein 1663045..1663962 Desulfovibrio vulgaris str. 'Miyazaki F' 7173263 YP_002435777.1 CDS DvMF_1360 NC_011769.1 1663959 1665536 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0879 two component Fis family transcriptional regulator; Fis family transcriptional regulator complement(1663959..1665536) Desulfovibrio vulgaris str. 'Miyazaki F' 7173264 YP_002435778.1 CDS DvMF_1361 NC_011769.1 1665536 1668274 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1665536..1668274) Desulfovibrio vulgaris str. 'Miyazaki F' 7173265 YP_002435779.1 CDS DvMF_1362 NC_011769.1 1668457 1668852 R KEGG: bld:BLi00801 hypothetical protein; hypothetical protein complement(1668457..1668852) Desulfovibrio vulgaris str. 'Miyazaki F' 7173266 YP_002435780.1 CDS DvMF_1363 NC_011769.1 1668912 1670654 R PFAM: conserved hypothetical protein; KEGG: dde:Dde_0876 hypothetical protein; hypothetical protein complement(1668912..1670654) Desulfovibrio vulgaris str. 'Miyazaki F' 7173267 YP_002435781.1 CDS DvMF_1364 NC_011769.1 1670975 1671433 R PFAM: ferric-uptake regulator; KEGG: dde:Dde_2676 ferric uptake regulator family protein; Fur family ferric uptake regulator complement(1670975..1671433) Desulfovibrio vulgaris str. 'Miyazaki F' 7173268 YP_002435782.1 CDS DvMF_1365 NC_011769.1 1671662 1674568 R PFAM: peptidase M16 domain protein; peptidase M16C associated domain protein; KEGG: dde:Dde_2677 PreP peptidase; peptidase M16C associated domain protein complement(1671662..1674568) Desulfovibrio vulgaris str. 'Miyazaki F' 7173269 YP_002435783.1 CDS DvMF_1366 NC_011769.1 1674900 1675676 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2680 diguanylate cyclase; diguanylate cyclase complement(1674900..1675676) Desulfovibrio vulgaris str. 'Miyazaki F' 7173270 YP_002435784.1 CDS DvMF_1367 NC_011769.1 1675713 1676474 R KEGG: dde:Dde_2681 hypothetical protein; hypothetical protein complement(1675713..1676474) Desulfovibrio vulgaris str. 'Miyazaki F' 7173271 YP_002435785.1 CDS DvMF_1368 NC_011769.1 1676884 1677198 R PFAM: glycoside hydrolase family 13 domain protein; KEGG: dde:Dde_2682 isoamylase protein-like; glycoside hydrolase family protein complement(1676884..1677198) Desulfovibrio vulgaris str. 'Miyazaki F' 7173272 YP_002435786.1 CDS DvMF_1369 NC_011769.1 1677671 1678063 R KEGG: dde:Dde_2685 hypothetical protein; hypothetical protein complement(1677671..1678063) Desulfovibrio vulgaris str. 'Miyazaki F' 7173273 YP_002435787.1 CDS DvMF_1370 NC_011769.1 1678074 1678358 R TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_2684 excisionase/Xis, DNA-binding; excisionase family DNA binding domain-containing protein complement(1678074..1678358) Desulfovibrio vulgaris str. 'Miyazaki F' 7173274 YP_002435788.1 CDS DvMF_1372 NC_011769.1 1679067 1681502 R TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_0703 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(1679067..1681502) Desulfovibrio vulgaris str. 'Miyazaki F' 7173276 YP_002435789.1 CDS DvMF_1373 NC_011769.1 1682190 1682438 R hypothetical protein complement(1682190..1682438) Desulfovibrio vulgaris str. 'Miyazaki F' 7173277 YP_002435790.1 CDS DvMF_1374 NC_011769.1 1682438 1683664 R KEGG: rxy:Rxyl_0093 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein complement(1682438..1683664) Desulfovibrio vulgaris str. 'Miyazaki F' 7173278 YP_002435791.1 CDS DvMF_1375 NC_011769.1 1683633 1684976 R PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_2687 PAS/PAC sensor signal transduction histidine kinase; histidine kinase complement(1683633..1684976) Desulfovibrio vulgaris str. 'Miyazaki F' 7173279 YP_002435792.1 CDS DvMF_1376 NC_011769.1 1685336 1686184 R TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: dde:Dde_2688 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase complement(1685336..1686184) Desulfovibrio vulgaris str. 'Miyazaki F' 7173280 YP_002435793.1 CDS DvMF_1377 NC_011769.1 1686456 1687643 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(1686456..1687643) Desulfovibrio vulgaris str. 'Miyazaki F' 7173281 YP_002435794.1 CDS obgE NC_011769.1 1687691 1688797 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1687691..1688797) Desulfovibrio vulgaris str. 'Miyazaki F' 7173282 YP_002435795.1 CDS rpmA NC_011769.1 1689242 1689511 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1689242..1689511) Desulfovibrio vulgaris str. 'Miyazaki F' 7173283 YP_002435796.1 CDS rplU NC_011769.1 1689530 1689838 R PFAM: ribosomal protein L21; KEGG: dde:Dde_2692 50S ribosomal protein L21P; 50S ribosomal protein L21 complement(1689530..1689838) Desulfovibrio vulgaris str. 'Miyazaki F' 7173284 YP_002435797.1 CDS DvMF_1381 NC_011769.1 1690621 1691499 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: dde:Dde_2693 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1690621..1691499 Desulfovibrio vulgaris str. 'Miyazaki F' 7173285 YP_002435798.1 CDS DvMF_1382 NC_011769.1 1691795 1691935 R hypothetical protein complement(1691795..1691935) Desulfovibrio vulgaris str. 'Miyazaki F' 7173286 YP_002435799.1 CDS DvMF_1383 NC_011769.1 1692323 1693762 D TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (uracil-5)-methyltransferase; KEGG: dde:Dde_2695 RNA methyltransferase; RNA methyltransferase, TrmA family 1692323..1693762 Desulfovibrio vulgaris str. 'Miyazaki F' 7173287 YP_002435800.1 CDS DvMF_1384 NC_011769.1 1693864 1694442 R KEGG: dde:Dde_2858 cytochrome C family protein; hypothetical protein complement(1693864..1694442) Desulfovibrio vulgaris str. 'Miyazaki F' 7173288 YP_002435801.1 CDS DvMF_1385 NC_011769.1 1694721 1695182 R KEGG: mbn:Mboo_0041 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(1694721..1695182) Desulfovibrio vulgaris str. 'Miyazaki F' 7173289 YP_002435802.1 CDS DvMF_1386 NC_011769.1 1695418 1695693 D KEGG: dde:Dde_2698 ATP synthase protein I; ATP synthase protein I 1695418..1695693 Desulfovibrio vulgaris str. 'Miyazaki F' 7173290 YP_002435803.1 CDS DvMF_1387 NC_011769.1 1695665 1696099 D PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein; ATP synthase I 1695665..1696099 Desulfovibrio vulgaris str. 'Miyazaki F' 7173291 YP_002435804.1 CDS DvMF_1388 NC_011769.1 1696103 1696804 D TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; KEGG: dde:Dde_2700 ATP synthase F0 subunit alpha; ATP synthase F0 subunit alpha 1696103..1696804 Desulfovibrio vulgaris str. 'Miyazaki F' 7173292 YP_002435805.1 CDS DvMF_1389 NC_011769.1 1696943 1697272 D TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dde:Dde_2701 ATP synthase F0 C subunit; ATP synthase F0 C subunit 1696943..1697272 Desulfovibrio vulgaris str. 'Miyazaki F' 7173293 YP_002435806.1 CDS DvMF_1390 NC_011769.1 1697385 1698032 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 1697385..1698032 Desulfovibrio vulgaris str. 'Miyazaki F' 7173294 YP_002435807.1 CDS DvMF_1391 NC_011769.1 1698438 1699325 D PFAM: protein of unknown function DUF62; KEGG: dde:Dde_2703 hypothetical protein; hypothetical protein 1698438..1699325 Desulfovibrio vulgaris str. 'Miyazaki F' 7173295 YP_002435808.1 CDS DvMF_1392 NC_011769.1 1699322 1700077 D PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dde:Dde_2704 cobalamin-5'-phosphate synthase; cobalamin-5-phosphate synthase CobS 1699322..1700077 Desulfovibrio vulgaris str. 'Miyazaki F' 7173296 YP_002435809.1 CDS DvMF_1393 NC_011769.1 1700278 1700718 D TIGRFAM: flagellar export protein FliJ; KEGG: dde:Dde_2705 flagellar FliJ protein; flagellar export protein FliJ 1700278..1700718 Desulfovibrio vulgaris str. 'Miyazaki F' 7173297 YP_002435810.1 CDS DvMF_1394 NC_011769.1 1700675 1701652 D KEGG: dde:Dde_2706 hypothetical protein; hypothetical protein 1700675..1701652 Desulfovibrio vulgaris str. 'Miyazaki F' 7173298 YP_002435811.1 CDS truA NC_011769.1 1701656 1702489 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1701656..1702489 Desulfovibrio vulgaris str. 'Miyazaki F' 7173299 YP_002435812.1 CDS DvMF_1396 NC_011769.1 1702796 1703776 R PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: dde:Dde_2708 flagellar motor switch protein FliM; flagellar motor switch protein FliM complement(1702796..1703776) Desulfovibrio vulgaris str. 'Miyazaki F' 7173300 YP_002435813.1 CDS DvMF_1397 NC_011769.1 1704097 1704564 R KEGG: dde:Dde_2710 hypothetical protein; hypothetical protein complement(1704097..1704564) Desulfovibrio vulgaris str. 'Miyazaki F' 7173301 YP_002435814.1 CDS DvMF_1398 NC_011769.1 1704829 1706886 D KEGG: dde:Dde_2711 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 1704829..1706886 Desulfovibrio vulgaris str. 'Miyazaki F' 7173302 YP_002435815.1 CDS DvMF_1399 NC_011769.1 1707374 1710295 D PFAM: ribosomal small subunit Rsm22; KEGG: dde:Dde_2712 hypothetical protein; ribosomal small subunit Rsm22 1707374..1710295 Desulfovibrio vulgaris str. 'Miyazaki F' 7173303 YP_002435816.1 CDS DvMF_1400 NC_011769.1 1710416 1711072 D TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: dde:Dde_2713 lipoate-protein ligase B; lipoate-protein ligase B 1710416..1711072 Desulfovibrio vulgaris str. 'Miyazaki F' 7173304 YP_002435817.1 CDS DvMF_1401 NC_011769.1 1711008 1711910 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1711008..1711910 Desulfovibrio vulgaris str. 'Miyazaki F' 7173305 YP_002435818.1 CDS DvMF_1402 NC_011769.1 1712411 1713799 R KEGG: dde:Dde_2722 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: radical SAM protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein complement(1712411..1713799) Desulfovibrio vulgaris str. 'Miyazaki F' 7173306 YP_002435819.1 CDS DvMF_1403 NC_011769.1 1713851 1715305 R PFAM: NLP/P60 protein; KEGG: dde:Dde_2724 NLP/P60 family lipoprotein; NLP/P60 protein complement(1713851..1715305) Desulfovibrio vulgaris str. 'Miyazaki F' 7173307 YP_002435820.1 CDS DvMF_1404 NC_011769.1 1715541 1717727 R KEGG: dde:Dde_2725 helicase RecD/TraA; TIGRFAM: helicase, RecD/TraA family; SMART: ATPase AAA; helicase, RecD/TraA family complement(1715541..1717727) Desulfovibrio vulgaris str. 'Miyazaki F' 7173308 YP_002435821.1 CDS DvMF_1405 NC_011769.1 1718357 1718824 D KEGG: sat:SYN_01065 hypothetical protein; hypothetical protein 1718357..1718824 Desulfovibrio vulgaris str. 'Miyazaki F' 7173309 YP_002435822.1 CDS DvMF_1406 NC_011769.1 1718834 1719418 D PFAM: OmpA/MotB domain protein; KEGG: sat:SYN_01064 outer membrane protein; OmpA/MotB domain-containing protein 1718834..1719418 Desulfovibrio vulgaris str. 'Miyazaki F' 7173310 YP_002435823.1 CDS DvMF_1407 NC_011769.1 1719440 1721515 D PFAM: metal-dependent phosphohydrolase HD sub domain; CHASE2 domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: dar:Daro_1897 metal-dependent phosphohydrolase; metal dependent phosphohydrolase 1719440..1721515 Desulfovibrio vulgaris str. 'Miyazaki F' 7173311 YP_002435824.1 CDS DvMF_1408 NC_011769.1 1721788 1722849 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1721788..1722849) Desulfovibrio vulgaris str. 'Miyazaki F' 7173312 YP_002435825.1 CDS DvMF_1409 NC_011769.1 1723103 1723525 R PFAM: UspA domain protein; KEGG: dde:Dde_2727 universal stress protein; UspA domain-containing protein complement(1723103..1723525) Desulfovibrio vulgaris str. 'Miyazaki F' 7173313 YP_002435826.1 CDS DvMF_1410 NC_011769.1 1723871 1724404 R PFAM: shikimate kinase; KEGG: ppd:Ppro_2361 shikimate kinase II; shikimate kinase complement(1723871..1724404) Desulfovibrio vulgaris str. 'Miyazaki F' 7173314 YP_002435827.1 CDS DvMF_1411 NC_011769.1 1724828 1726012 D PFAM: aminotransferase class I and II; KEGG: dde:Dde_2730 aminotransferase; class I and II aminotransferase 1724828..1726012 Desulfovibrio vulgaris str. 'Miyazaki F' 7173315 YP_002435828.1 CDS DvMF_1412 NC_011769.1 1726005 1727315 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1726005..1727315 Desulfovibrio vulgaris str. 'Miyazaki F' 7173316 YP_002435829.1 CDS DvMF_1413 NC_011769.1 1727449 1728258 R KEGG: dra:DR_1144 hypothetical protein; hypothetical protein complement(1727449..1728258) Desulfovibrio vulgaris str. 'Miyazaki F' 7173317 YP_002435830.1 CDS DvMF_1414 NC_011769.1 1728361 1729626 D PFAM: metalloenzyme domain protein; KEGG: dde:Dde_2732 phosphoglycerate mutase; phosphoglycerate mutase 1728361..1729626 Desulfovibrio vulgaris str. 'Miyazaki F' 7173318 YP_002435831.1 CDS DvMF_1415 NC_011769.1 1729781 1730092 D KEGG: paa:Paes_0502 hypothetical protein; hypothetical protein 1729781..1730092 Desulfovibrio vulgaris str. 'Miyazaki F' 7173319 YP_002435832.1 CDS DvMF_1416 NC_011769.1 1730117 1730554 R KEGG: eba:ebA616 hypothetical protein; hypothetical protein complement(1730117..1730554) Desulfovibrio vulgaris str. 'Miyazaki F' 7173320 YP_002435833.1 CDS DvMF_1417 NC_011769.1 1730606 1733521 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; ATPase P; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY3476 hypothetical protein; ATPase P complement(1730606..1733521) Desulfovibrio vulgaris str. 'Miyazaki F' 7173321 YP_002435834.1 CDS DvMF_1418 NC_011769.1 1733583 1733864 R KEGG: tde:TDE0472 hypothetical protein; hypothetical protein complement(1733583..1733864) Desulfovibrio vulgaris str. 'Miyazaki F' 7173322 YP_002435835.1 CDS DvMF_1419 NC_011769.1 1735325 1736980 R KEGG: rci:RCIX1753 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; signal transduction histidine kinase complement(1735325..1736980) Desulfovibrio vulgaris str. 'Miyazaki F' 7173323 YP_002435836.1 CDS DvMF_1420 NC_011769.1 1737018 1738172 R PFAM: MltA domain protein; 3D domain protein; KEGG: dde:Dde_2733 transglycosylase; MltA domain-containing protein complement(1737018..1738172) Desulfovibrio vulgaris str. 'Miyazaki F' 7173324 YP_002435837.1 CDS DvMF_1421 NC_011769.1 1738458 1738868 D PFAM: thioesterase superfamily protein; KEGG: dde:Dde_2735 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 1738458..1738868 Desulfovibrio vulgaris str. 'Miyazaki F' 7173325 YP_002435838.1 CDS DvMF_1422 NC_011769.1 1739000 1739821 D PFAM: amidohydrolase 2; KEGG: dde:Dde_2736 amidohydrolase family protein; amidohydrolase 1739000..1739821 Desulfovibrio vulgaris str. 'Miyazaki F' 7173326 YP_002435839.1 CDS DvMF_1423 NC_011769.1 1739952 1740854 R KEGG: dde:Dde_2962 hypothetical protein; hypothetical protein complement(1739952..1740854) Desulfovibrio vulgaris str. 'Miyazaki F' 7173327 YP_002435840.1 CDS DvMF_1424 NC_011769.1 1741176 1742612 D PFAM: amidohydrolase; amidohydrolase; KEGG: dde:Dde_2963 amidohydrolase family protein; amidohydrolase 1741176..1742612 Desulfovibrio vulgaris str. 'Miyazaki F' 7173328 YP_002435841.1 CDS pyrB NC_011769.1 1742627 1743604 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1742627..1743604 Desulfovibrio vulgaris str. 'Miyazaki F' 7173329 YP_002435842.1 CDS DvMF_1426 NC_011769.1 1743601 1744881 D KEGG: dde:Dde_2965 dihydroorotase; TIGRFAM: dihydroorotase; PFAM: amidohydrolase; dihydroorotase 1743601..1744881 Desulfovibrio vulgaris str. 'Miyazaki F' 7173330 YP_002435843.1 CDS DvMF_1427 NC_011769.1 1746161 1747486 D PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dde:Dde_2966 HD domain-containing protein; metal dependent phosphohydrolase 1746161..1747486 Desulfovibrio vulgaris str. 'Miyazaki F' 7173331 YP_002435844.1 CDS DvMF_1428 NC_011769.1 1747821 1748777 R PFAM: acyl-ACP thioesterase; KEGG: sru:SRU_0057 acyl-ACP thioesterase superfamily; acyl-ACP thioesterase complement(1747821..1748777) Desulfovibrio vulgaris str. 'Miyazaki F' 7173332 YP_002435845.1 CDS DvMF_1429 NC_011769.1 1749202 1749798 D PFAM: regulatory protein MarR; KEGG: dps:DP1862 transcriptional regulator; MarR family transcriptional regulator 1749202..1749798 Desulfovibrio vulgaris str. 'Miyazaki F' 7173333 YP_002435846.1 CDS DvMF_1430 NC_011769.1 1749795 1751288 D PFAM: major facilitator superfamily MFS_1; KEGG: dol:Dole_1452 major facilitator transporter; major facilitator superfamily protein 1749795..1751288 Desulfovibrio vulgaris str. 'Miyazaki F' 7173334 YP_002435847.1 CDS DvMF_1431 NC_011769.1 1751563 1752666 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1751563..1752666 Desulfovibrio vulgaris str. 'Miyazaki F' 7173335 YP_002435848.1 CDS DvMF_1432 NC_011769.1 1753027 1754031 R KEGG: dde:Dde_2972 hypothetical protein; hypothetical protein complement(1753027..1754031) Desulfovibrio vulgaris str. 'Miyazaki F' 7173336 YP_002435849.1 CDS DvMF_1433 NC_011769.1 1754175 1755470 R PFAM: iron-containing alcohol dehydrogenase; KEGG: dde:Dde_3126 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(1754175..1755470) Desulfovibrio vulgaris str. 'Miyazaki F' 7173337 YP_002435850.1 CDS DvMF_1434 NC_011769.1 1755813 1757306 R PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_2973 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(1755813..1757306) Desulfovibrio vulgaris str. 'Miyazaki F' 7173338 YP_002435851.1 CDS DvMF_1435 NC_011769.1 1757591 1758043 R PFAM: peptidase S24 and S26 domain protein; KEGG: dde:Dde_2974 SOS mutagenesis protein UmuD; peptidase S24 and S26 domain-containing protein complement(1757591..1758043) Desulfovibrio vulgaris str. 'Miyazaki F' 7173339 YP_002435852.1 CDS DvMF_1436 NC_011769.1 1758348 1759229 D KEGG: dde:Dde_2975 hypothetical protein; hypothetical protein 1758348..1759229 Desulfovibrio vulgaris str. 'Miyazaki F' 7173340 YP_002435853.1 CDS DvMF_1437 NC_011769.1 1759456 1759872 D PFAM: regulatory protein MarR; KEGG: dde:Dde_2977 MarR family transcriptional regulator; MarR family transcriptional regulator 1759456..1759872 Desulfovibrio vulgaris str. 'Miyazaki F' 7173341 YP_002435854.1 CDS DvMF_1438 NC_011769.1 1760027 1760614 R PFAM: protein of unknown function UPF0016; KEGG: azo:azo0370 hypothetical protein; hypothetical protein complement(1760027..1760614) Desulfovibrio vulgaris str. 'Miyazaki F' 7173342 YP_002435855.1 CDS DvMF_1439 NC_011769.1 1761165 1761728 D PFAM: GAF domain protein; KEGG: dde:Dde_3737 hypothetical protein; phytochrome sensor protein 1761165..1761728 Desulfovibrio vulgaris str. 'Miyazaki F' 7173343 YP_002435856.1 CDS DvMF_1440 NC_011769.1 1761740 1762756 D KEGG: dde:Dde_3736 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 1761740..1762756 Desulfovibrio vulgaris str. 'Miyazaki F' 7173344 YP_002435857.1 CDS DvMF_1441 NC_011769.1 1762881 1763711 R TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; methyltransferase type 11; KEGG: dde:Dde_2981 hemolysin A; hemolysin A complement(1762881..1763711) Desulfovibrio vulgaris str. 'Miyazaki F' 7173345 YP_002435858.1 CDS rpmE NC_011769.1 1764133 1764348 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1764133..1764348 Desulfovibrio vulgaris str. 'Miyazaki F' 7173346 YP_002435859.1 CDS DvMF_1443 NC_011769.1 1764461 1765540 D PFAM: protein of unknown function DUF1385; KEGG: dde:Dde_2983 lipoprotein; hypothetical protein 1764461..1765540 Desulfovibrio vulgaris str. 'Miyazaki F' 7173347 YP_002435860.1 CDS prfA NC_011769.1 1765544 1766617 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1765544..1766617 Desulfovibrio vulgaris str. 'Miyazaki F' 7173348 YP_002435861.1 CDS DvMF_1445 NC_011769.1 1766846 1767955 D TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: dde:Dde_2985 HemK family modification methylase; protein-(glutamine-N5) methyltransferase 1766846..1767955 Desulfovibrio vulgaris str. 'Miyazaki F' 7173349 YP_002435862.1 CDS lpxC NC_011769.1 1768205 1769155 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1768205..1769155 Desulfovibrio vulgaris str. 'Miyazaki F' 7173350 YP_002435863.1 CDS DvMF_1447 NC_011769.1 1770299 1771492 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1770299..1771492 Desulfovibrio vulgaris str. 'Miyazaki F' 7173355 YP_002435864.1 CDS rpmG NC_011769.1 1771496 1771645 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1771496..1771645 Desulfovibrio vulgaris str. 'Miyazaki F' 7173356 YP_002435865.1 CDS secE NC_011769.1 1771894 1772145 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1771894..1772145 Desulfovibrio vulgaris str. 'Miyazaki F' 7173358 YP_002435866.1 CDS DvMF_1450 NC_011769.1 1772157 1772711 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: dde:Dde_2991 transcription antitermination protein NusG; NusG antitermination factor 1772157..1772711 Desulfovibrio vulgaris str. 'Miyazaki F' 7173359 YP_002435867.1 CDS rplK NC_011769.1 1772776 1773198 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1772776..1773198 Desulfovibrio vulgaris str. 'Miyazaki F' 7173360 YP_002435868.1 CDS rplA NC_011769.1 1773336 1774043 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1773336..1774043 Desulfovibrio vulgaris str. 'Miyazaki F' 7173361 YP_002435869.1 CDS rplJ NC_011769.1 1774228 1774749 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1774228..1774749 Desulfovibrio vulgaris str. 'Miyazaki F' 7173362 YP_002435870.1 CDS rplL NC_011769.1 1774806 1775189 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1774806..1775189 Desulfovibrio vulgaris str. 'Miyazaki F' 7173363 YP_002435871.1 CDS rpoB NC_011769.1 1775852 1779970 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1775852..1779970 Desulfovibrio vulgaris str. 'Miyazaki F' 7173364 YP_002435872.1 CDS DvMF_1456 NC_011769.1 1780231 1784388 D KEGG: dde:Dde_2998 DNA-directed RNA polymerase, acetylornithine deacetylase; TIGRFAM: DNA-directed RNA polymerase beta' subunit; PFAM: RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 1780231..1784388 Desulfovibrio vulgaris str. 'Miyazaki F' 7173365 YP_002435873.1 CDS DvMF_1457 NC_011769.1 1784883 1785560 D KEGG: dde:Dde_2999 hypothetical protein; hypothetical protein 1784883..1785560 Desulfovibrio vulgaris str. 'Miyazaki F' 7173366 YP_002435874.1 CDS DvMF_1458 NC_011769.1 1785575 1788112 D KEGG: dde:Dde_3000 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1785575..1788112 Desulfovibrio vulgaris str. 'Miyazaki F' 7173367 YP_002435875.1 CDS DvMF_1459 NC_011769.1 1788198 1789154 D PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: dde:Dde_3001 hypothetical protein; hypothetical protein 1788198..1789154 Desulfovibrio vulgaris str. 'Miyazaki F' 7173368 YP_002435876.1 CDS DvMF_1460 NC_011769.1 1789217 1790641 D KEGG: dde:Dde_3002 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; hypothetical protein; metal-dependent hydrolase HDOD; SMART: PAS domain containing protein; metal-dependent phosphohydrolase HD region; PAS/PAC sensor protein 1789217..1790641 Desulfovibrio vulgaris str. 'Miyazaki F' 7173369 YP_002435877.1 CDS DvMF_1461 NC_011769.1 1790674 1792149 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_3003 two component Fis family transcriptional regulator; Fis family transcriptional regulator 1790674..1792149 Desulfovibrio vulgaris str. 'Miyazaki F' 7173370 YP_002435878.1 CDS gpmA NC_011769.1 1792258 1793007 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1792258..1793007 Desulfovibrio vulgaris str. 'Miyazaki F' 7173371 YP_002435879.1 CDS DvMF_1463 NC_011769.1 1793379 1794743 D PFAM: hypothetical protein; response regulator receiver; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3006 response regulator receiver domain-containing protein; response regulator receiver protein 1793379..1794743 Desulfovibrio vulgaris str. 'Miyazaki F' 7173372 YP_002435880.1 CDS DvMF_1464 NC_011769.1 1794909 1796081 D PFAM: protein of unknown function DUF39; KEGG: dde:Dde_3007 hypothetical protein; hypothetical protein 1794909..1796081 Desulfovibrio vulgaris str. 'Miyazaki F' 7173373 YP_002435881.1 CDS DvMF_1465 NC_011769.1 1796668 1797522 D KEGG: dde:Dde_3008 hypothetical protein; hypothetical protein 1796668..1797522 Desulfovibrio vulgaris str. 'Miyazaki F' 7173374 YP_002435882.1 CDS DvMF_1466 NC_011769.1 1797780 1797890 D hypothetical protein 1797780..1797890 Desulfovibrio vulgaris str. 'Miyazaki F' 7173375 YP_002435883.1 CDS DvMF_1467 NC_011769.1 1798260 1798676 D TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: dde:Dde_3010 hypothetical protein; FmdB family regulatory protein 1798260..1798676 Desulfovibrio vulgaris str. 'Miyazaki F' 7173376 YP_002435884.1 CDS DvMF_1468 NC_011769.1 1798933 1800231 D TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: dde:Dde_3011 adenylosuccinate lyase; adenylosuccinate lyase 1798933..1800231 Desulfovibrio vulgaris str. 'Miyazaki F' 7173377 YP_002435885.1 CDS DvMF_1469 NC_011769.1 1800342 1800902 D KEGG: dde:Dde_3012 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 1800342..1800902 Desulfovibrio vulgaris str. 'Miyazaki F' 7173378 YP_002435886.1 CDS DvMF_1470 NC_011769.1 1801188 1802486 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dde:Dde_3013 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 1801188..1802486 Desulfovibrio vulgaris str. 'Miyazaki F' 7173379 YP_002435887.1 CDS DvMF_1471 NC_011769.1 1802483 1803349 D KEGG: dde:Dde_3014 hypothetical protein; hypothetical protein 1802483..1803349 Desulfovibrio vulgaris str. 'Miyazaki F' 7173380 YP_002435888.1 CDS DvMF_1472 NC_011769.1 1803809 1804150 R KEGG: dde:Dde_3015 hypothetical protein; hypothetical protein complement(1803809..1804150) Desulfovibrio vulgaris str. 'Miyazaki F' 7173381 YP_002435889.1 CDS DvMF_1473 NC_011769.1 1804298 1806412 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(1804298..1806412) Desulfovibrio vulgaris str. 'Miyazaki F' 7173382 YP_002435890.1 CDS DvMF_1474 NC_011769.1 1807139 1807966 D PFAM: flagellin domain protein; KEGG: dde:Dde_3018 flagellin N-terminal domain-containing protein; flagellin domain-containing protein 1807139..1807966 Desulfovibrio vulgaris str. 'Miyazaki F' 7173383 YP_002435891.1 CDS DvMF_1475 NC_011769.1 1808491 1808943 D KEGG: dre:407680 sc:d0144; hypothetical protein 1808491..1808943 Desulfovibrio vulgaris str. 'Miyazaki F' 7173384 YP_002435892.1 CDS DvMF_1476 NC_011769.1 1809297 1809656 D PFAM: protein of unknown function DUF486; KEGG: rsq:Rsph17025_2306 protein of unknown function DUF486; hypothetical protein 1809297..1809656 Desulfovibrio vulgaris str. 'Miyazaki F' 7173385 YP_002435893.1 CDS DvMF_1477 NC_011769.1 1809643 1811835 R KEGG: bur:Bcep18194_B1707 diguanylate cyclase (GGDEF domain); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(1809643..1811835) Desulfovibrio vulgaris str. 'Miyazaki F' 7173386 YP_002435894.1 CDS DvMF_1478 NC_011769.1 1812242 1813459 R PFAM: extracellular ligand-binding receptor; KEGG: sfu:Sfum_0378 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1812242..1813459) Desulfovibrio vulgaris str. 'Miyazaki F' 7173387 YP_002435895.1 CDS DvMF_1479 NC_011769.1 1813563 1814333 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: fal:FRAAL6172 GntR-family transcription regulator; GntR family transcriptional regulator complement(1813563..1814333) Desulfovibrio vulgaris str. 'Miyazaki F' 7173388 YP_002435896.1 CDS DvMF_1480 NC_011769.1 1814333 1815175 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fal:FRAAL0729 high-affinity branched-chain amino acid transporter (ABC superfamily, atp_bind); ABC transporter complement(1814333..1815175) Desulfovibrio vulgaris str. 'Miyazaki F' 7173389 YP_002435897.1 CDS DvMF_1481 NC_011769.1 1815168 1815947 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: xau:Xaut_0890 ABC transporter; ABC transporter complement(1815168..1815947) Desulfovibrio vulgaris str. 'Miyazaki F' 7173390 YP_002435898.1 CDS DvMF_1482 NC_011769.1 1815944 1817026 R PFAM: inner-membrane translocator; KEGG: gme:Gmet_1821 inner-membrane translocator; inner-membrane translocator complement(1815944..1817026) Desulfovibrio vulgaris str. 'Miyazaki F' 7173391 YP_002435899.1 CDS DvMF_1483 NC_011769.1 1817023 1817910 R PFAM: inner-membrane translocator; KEGG: glo:Glov_1862 inner-membrane translocator; inner-membrane translocator complement(1817023..1817910) Desulfovibrio vulgaris str. 'Miyazaki F' 7173392 YP_002435900.1 CDS DvMF_1484 NC_011769.1 1818308 1820527 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pth:PTH_2707 anaerobic dehydrogenases; nitrate reductase 1818308..1820527 Desulfovibrio vulgaris str. 'Miyazaki F' 7173393 YP_002435901.1 CDS DvMF_1485 NC_011769.1 1820831 1822540 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1820831..1822540 Desulfovibrio vulgaris str. 'Miyazaki F' 7173394 YP_002435902.1 CDS DvMF_1486 NC_011769.1 1822679 1823794 R PFAM: GTPase EngC; KEGG: pph:Ppha_1108 GTPase EngC; GTPase EngC complement(1822679..1823794) Desulfovibrio vulgaris str. 'Miyazaki F' 7173395 YP_002435903.1 CDS DvMF_1487 NC_011769.1 1823858 1824394 R PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VF1120 acetyltransferase; N-acetyltransferase GCN5 complement(1823858..1824394) Desulfovibrio vulgaris str. 'Miyazaki F' 7173396 YP_002435904.1 CDS DvMF_1488 NC_011769.1 1825362 1826702 D PFAM: protein of unknown function DUF1063; KEGG: dde:Dde_0807 hypothetical protein; hypothetical protein 1825362..1826702 Desulfovibrio vulgaris str. 'Miyazaki F' 7173399 YP_002435905.1 CDS DvMF_1489 NC_011769.1 1826834 1827526 R PFAM: lysine exporter (LYSE/YGGA); KEGG: cvi:CV_0188 homoserine/homoserine lactone efflux protein; lysine exporter protein LysE/YggA complement(1826834..1827526) Desulfovibrio vulgaris str. 'Miyazaki F' 7173400 YP_002435906.1 CDS DvMF_1490 NC_011769.1 1828105 1829694 R PFAM: cytochrome C552; KEGG: lip:LI1002 chain A, cytochrome C nitrite reductase; nitrite reductase complement(1828105..1829694) Desulfovibrio vulgaris str. 'Miyazaki F' 7173401 YP_002435907.1 CDS DvMF_1491 NC_011769.1 1829699 1830178 R KEGG: lip:LI1001 cytochrome C nitrite reductase small subunit; cytochrome C nitrite reductase small subunit complement(1829699..1830178) Desulfovibrio vulgaris str. 'Miyazaki F' 7173402 YP_002435908.1 CDS DvMF_1492 NC_011769.1 1830504 1833593 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: lch:Lcho_4210 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 1830504..1833593 Desulfovibrio vulgaris str. 'Miyazaki F' 7173403 YP_002435909.1 CDS DvMF_1493 NC_011769.1 1833593 1835533 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: gbm:Gbem_0673 two component, sigma54 specific, transcriptional regulator, fis family; Fis family transcriptional regulator 1833593..1835533 Desulfovibrio vulgaris str. 'Miyazaki F' 7173404 YP_002435910.1 CDS DvMF_1494 NC_011769.1 1836270 1837622 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 1836270..1837622 Desulfovibrio vulgaris str. 'Miyazaki F' 7173405 YP_002435911.1 CDS DvMF_1495 NC_011769.1 1838241 1845677 R PFAM: Hemolysin-type calcium-binding region; von Willebrand factor A; KEGG: asa:ASA_1675 hemolysin-type calcium-binding repeat-containing protein; von Willebrand factor A complement(1838241..1845677) Desulfovibrio vulgaris str. 'Miyazaki F' 7173406 YP_002435912.1 CDS DvMF_1496 NC_011769.1 1846656 1847657 D PFAM: anaerobic cobalt chelatase; KEGG: dde:Dde_3103 cobalamin biosynthesis protein CbiK Co2+ chelatase-like; anaerobic cobalt chelatase 1846656..1847657 Desulfovibrio vulgaris str. 'Miyazaki F' 7173407 YP_002435913.1 CDS DvMF_1497 NC_011769.1 1847657 1848820 D PFAM: transporter permease; KEGG: dde:Dde_3104 iron compound ABC transporter permease; transporter permease 1847657..1848820 Desulfovibrio vulgaris str. 'Miyazaki F' 7173408 YP_002435914.1 CDS DvMF_1498 NC_011769.1 1848817 1849830 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_3105 ATPase; ABC transporter 1848817..1849830 Desulfovibrio vulgaris str. 'Miyazaki F' 7173409 YP_002435915.1 CDS DvMF_1499 NC_011769.1 1849823 1850971 D PFAM: periplasmic binding protein; KEGG: dde:Dde_3106 iron compound ABC transporter periplasmic iron compount-binding protein; periplasmic binding protein 1849823..1850971 Desulfovibrio vulgaris str. 'Miyazaki F' 7173410 YP_002435916.1 CDS DvMF_1500 NC_011769.1 1851059 1851838 D TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3107 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase; precorrin-2 C(20)-methyltransferase 1851059..1851838 Desulfovibrio vulgaris str. 'Miyazaki F' 7173411 YP_002435917.1 CDS DvMF_1501 NC_011769.1 1852305 1854350 R PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(1852305..1854350) Desulfovibrio vulgaris str. 'Miyazaki F' 7173412 YP_002435918.1 CDS DvMF_1502 NC_011769.1 1854593 1855336 R PFAM: protein of unknown function DUF330; KEGG: rsq:Rsph17025_1717 ABC-type uncharacterized transporter auxiliary component-like protein; ABC transporter complement(1854593..1855336) Desulfovibrio vulgaris str. 'Miyazaki F' 7173413 YP_002435919.1 CDS DvMF_1503 NC_011769.1 1855333 1856256 R PFAM: hypothetical protein; KEGG: pla:Plav_2514 mammalian cell entry related domain protein; hypothetical protein complement(1855333..1856256) Desulfovibrio vulgaris str. 'Miyazaki F' 7173414 YP_002435920.1 CDS DvMF_1504 NC_011769.1 1856258 1857109 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pla:Plav_2513 ABC transporter; ABC transporter complement(1856258..1857109) Desulfovibrio vulgaris str. 'Miyazaki F' 7173415 YP_002435921.1 CDS DvMF_1505 NC_011769.1 1857111 1858403 R PFAM: protein of unknown function DUF140; KEGG: pla:Plav_2512 protein of unknown function DUF140; hypothetical protein complement(1857111..1858403) Desulfovibrio vulgaris str. 'Miyazaki F' 7173416 YP_002435922.1 CDS DvMF_1506 NC_011769.1 1858835 1859107 R hypothetical protein complement(1858835..1859107) Desulfovibrio vulgaris str. 'Miyazaki F' 7173417 YP_002435923.1 CDS DvMF_1507 NC_011769.1 1859336 1860139 R PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: par:Psyc_1134 hypothetical protein; extradiol ring-cleavage dioxygenase class III protein subunit B complement(1859336..1860139) Desulfovibrio vulgaris str. 'Miyazaki F' 7173418 YP_002435924.1 CDS DvMF_1508 NC_011769.1 1860298 1860729 R hypothetical protein complement(1860298..1860729) Desulfovibrio vulgaris str. 'Miyazaki F' 7173419 YP_002435925.1 CDS DvMF_1509 NC_011769.1 1860825 1861259 R hypothetical protein complement(1860825..1861259) Desulfovibrio vulgaris str. 'Miyazaki F' 7173420 YP_002435926.1 CDS DvMF_1510 NC_011769.1 1861644 1863056 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3040 two component Fis family transcriptional regulator; Fis family transcriptional regulator complement(1861644..1863056) Desulfovibrio vulgaris str. 'Miyazaki F' 7173421 YP_002435927.1 CDS DvMF_1511 NC_011769.1 1863263 1864009 D KEGG: dps:DP0367 hypothetical protein; hypothetical protein 1863263..1864009 Desulfovibrio vulgaris str. 'Miyazaki F' 7173422 YP_002435928.1 CDS DvMF_1512 NC_011769.1 1864156 1864542 D TIGRFAM: endoribonuclease L-PSP; PFAM: endoribonuclease L-PSP; KEGG: dde:Dde_2582 endoribonuclease L-PSP; endoribonuclease L-PSP 1864156..1864542 Desulfovibrio vulgaris str. 'Miyazaki F' 7173423 YP_002435929.1 CDS DvMF_1513 NC_011769.1 1864919 1865803 D PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1151 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1864919..1865803 Desulfovibrio vulgaris str. 'Miyazaki F' 7173424 YP_002435930.1 CDS DvMF_1514 NC_011769.1 1865800 1866957 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_3998 diguanylate cyclase; diguanylate cyclase 1865800..1866957 Desulfovibrio vulgaris str. 'Miyazaki F' 7173425 YP_002435931.1 CDS DvMF_1515 NC_011769.1 1867171 1870287 R PFAM: acriflavin resistance protein; KEGG: gur:Gura_2371 acriflavin resistance protein; acriflavin resistance protein complement(1867171..1870287) Desulfovibrio vulgaris str. 'Miyazaki F' 7173426 YP_002435932.1 CDS DvMF_1516 NC_011769.1 1870284 1871606 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gme:Gmet_1651 secretion protein HlyD; RND family efflux transporter MFP subunit complement(1870284..1871606) Desulfovibrio vulgaris str. 'Miyazaki F' 7173427 YP_002435933.1 CDS DvMF_1517 NC_011769.1 1871603 1872721 R PFAM: regulatory protein TetR; transcriptional regulator TetR; KEGG: sfu:Sfum_0446 TetR family transcriptional regulator; TetR family transcriptional regulator complement(1871603..1872721) Desulfovibrio vulgaris str. 'Miyazaki F' 7173428 YP_002435934.1 CDS DvMF_1518 NC_011769.1 1873516 1875462 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tte:TTE0123 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, Mnhsubunit alpha; NADH dehydrogenase (quinone) 1873516..1875462 Desulfovibrio vulgaris str. 'Miyazaki F' 7173429 YP_002435935.1 CDS DvMF_1519 NC_011769.1 1875462 1876310 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: tte:TTE0124 NADH:ubiquinone oxidoreductase subunit 1 (chain H); respiratory-chain NADH dehydrogenase subunit 1 1875462..1876310 Desulfovibrio vulgaris str. 'Miyazaki F' 7173430 YP_002435936.1 CDS DvMF_1520 NC_011769.1 1876326 1876799 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: mbn:Mboo_0026 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 1876326..1876799 Desulfovibrio vulgaris str. 'Miyazaki F' 7173431 YP_002435937.1 CDS DvMF_1521 NC_011769.1 1876925 1877317 D KEGG: csc:Csac_1537 NADH dehydrogenase (ubiquinone), 30 kDa subunit; hypothetical protein 1876925..1877317 Desulfovibrio vulgaris str. 'Miyazaki F' 7173432 YP_002435938.1 CDS DvMF_1522 NC_011769.1 1877330 1878406 D PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: tte:TTE0127 NADH:ubiquinone oxidoreductase 49 kD subunit 7; NADH-ubiquinone oxidoreductase chain 49kDa 1877330..1878406 Desulfovibrio vulgaris str. 'Miyazaki F' 7173433 YP_002435939.1 CDS DvMF_1523 NC_011769.1 1878423 1878818 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tte:TTE0128 formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); 4Fe-4S ferredoxin 1878423..1878818 Desulfovibrio vulgaris str. 'Miyazaki F' 7173434 YP_002435940.1 CDS DvMF_1524 NC_011769.1 1879034 1879681 R PFAM: flavin reductase domain protein FMN-binding; KEGG: mac:MA0328 flavoredoxin; flavin reductase domain-containing FMN-binding protein complement(1879034..1879681) Desulfovibrio vulgaris str. 'Miyazaki F' 7173435 YP_002435941.1 CDS DvMF_1525 NC_011769.1 1879804 1880109 R PFAM: antibiotic biosynthesis monooxygenase; KEGG: bpd:BURPS668_1728 antibiotic biosynthesis monooxygenase family protein; antibiotic biosynthesis monooxygenase complement(1879804..1880109) Desulfovibrio vulgaris str. 'Miyazaki F' 7173436 YP_002435942.1 CDS DvMF_1526 NC_011769.1 1880415 1881662 D TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: mja:MJ0718 chromate resistance protein (ChrA); chromate transporter chromate ion transporter (CHR) family 1880415..1881662 Desulfovibrio vulgaris str. 'Miyazaki F' 7173437 YP_002435943.1 CDS DvMF_1527 NC_011769.1 1881861 1882715 R KEGG: dde:Dde_0591 hypothetical protein; hypothetical protein complement(1881861..1882715) Desulfovibrio vulgaris str. 'Miyazaki F' 7173438 YP_002435944.1 CDS DvMF_1528 NC_011769.1 1883223 1884692 R PFAM: phospholipase D/transphosphatidylase; KEGG: dde:Dde_0590 cardiolipin synthetase 2; phospholipase D/transphosphatidylase complement(1883223..1884692) Desulfovibrio vulgaris str. 'Miyazaki F' 7173439 YP_002435945.1 CDS DvMF_1529 NC_011769.1 1884765 1885190 R PFAM: UspA domain protein; KEGG: dde:Dde_0589 universal stress protein; UspA domain-containing protein complement(1884765..1885190) Desulfovibrio vulgaris str. 'Miyazaki F' 7173440 YP_002435946.1 CDS DvMF_1530 NC_011769.1 1885562 1888252 D KEGG: mgm:Mmc1_1829 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1885562..1888252 Desulfovibrio vulgaris str. 'Miyazaki F' 7173441 YP_002435947.1 CDS DvMF_1531 NC_011769.1 1888675 1888866 R hypothetical protein complement(1888675..1888866) Desulfovibrio vulgaris str. 'Miyazaki F' 7173442 YP_002435948.1 CDS DvMF_1532 NC_011769.1 1889088 1890305 R TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dde:Dde_0573 carboxynorspermidine decarboxylase; carboxynorspermidine decarboxylase complement(1889088..1890305) Desulfovibrio vulgaris str. 'Miyazaki F' 7173443 YP_002435949.1 CDS DvMF_1533 NC_011769.1 1890393 1891082 R KEGG: rfr:Rfer_0025 hypothetical protein; hypothetical protein complement(1890393..1891082) Desulfovibrio vulgaris str. 'Miyazaki F' 7173444 YP_002435950.1 CDS DvMF_1534 NC_011769.1 1891066 1891599 R KEGG: xac:XAC1166 hypothetical protein; hypothetical protein complement(1891066..1891599) Desulfovibrio vulgaris str. 'Miyazaki F' 7173445 YP_002435951.1 CDS DvMF_1535 NC_011769.1 1891930 1893120 R PFAM: saccharopine dehydrogenase; KEGG: dde:Dde_0572 saccharopine dehydrogenase; saccharopine dehydrogenase complement(1891930..1893120) Desulfovibrio vulgaris str. 'Miyazaki F' 7173446 YP_002435952.1 CDS DvMF_1536 NC_011769.1 1893516 1895453 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(1893516..1895453) Desulfovibrio vulgaris str. 'Miyazaki F' 7173447 YP_002435953.1 CDS DvMF_1537 NC_011769.1 1896369 1897514 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0569 diguanylate cyclase; diguanylate cyclase 1896369..1897514 Desulfovibrio vulgaris str. 'Miyazaki F' 7173448 YP_002435954.1 CDS DvMF_1538 NC_011769.1 1897638 1899203 R PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: dde:Dde_0568 leucyl aminopeptidase; leucyl aminopeptidase complement(1897638..1899203) Desulfovibrio vulgaris str. 'Miyazaki F' 7173449 YP_002435955.1 CDS DvMF_1539 NC_011769.1 1899558 1900877 R PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: dde:Dde_1253 malate dehydrogenase; malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) complement(1899558..1900877) Desulfovibrio vulgaris str. 'Miyazaki F' 7173450 YP_002435956.1 CDS DvMF_1540 NC_011769.1 1901070 1902434 D PFAM: cation transporter; KEGG: dde:Dde_0567 TrkH family potassium uptake protein; H(+)-transporting two-sector ATPase 1901070..1902434 Desulfovibrio vulgaris str. 'Miyazaki F' 7173451 YP_002435957.1 CDS DvMF_1541 NC_011769.1 1902471 1903136 D PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dde:Dde_0566 potassium uptake protein TrkA; TrkA-N domain-containing protein 1902471..1903136 Desulfovibrio vulgaris str. 'Miyazaki F' 7173452 YP_002435958.1 CDS DvMF_1542 NC_011769.1 1903359 1904237 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0530 hypothetical protein; hypothetical protein complement(1903359..1904237) Desulfovibrio vulgaris str. 'Miyazaki F' 7173453 YP_002435959.1 CDS DvMF_1543 NC_011769.1 1904584 1905237 D TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: nmn:NMCC_1878 RlpA-like protein precursor; lipoprotein A 1904584..1905237 Desulfovibrio vulgaris str. 'Miyazaki F' 7173454 YP_002435960.1 CDS DvMF_1544 NC_011769.1 1905797 1908016 D KEGG: dde:Dde_0532 response regulator receiver/GGDEF/PAS/PAC domain-containing protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1905797..1908016 Desulfovibrio vulgaris str. 'Miyazaki F' 7173455 YP_002435961.1 CDS DvMF_1545 NC_011769.1 1908197 1908547 R KEGG: dde:Dde_0563 hypothetical protein; hypothetical protein complement(1908197..1908547) Desulfovibrio vulgaris str. 'Miyazaki F' 7173456 YP_002435962.1 CDS DvMF_1546 NC_011769.1 1908553 1909158 R KEGG: dde:Dde_0564 hypothetical protein; hypothetical protein complement(1908553..1909158) Desulfovibrio vulgaris str. 'Miyazaki F' 7173457 YP_002435963.1 CDS DvMF_1547 NC_011769.1 1909312 1911069 R PFAM: glycosyl transferase family 9; KEGG: dde:Dde_0565 heptosyltransferase family protein; glycosyl transferase family protein complement(1909312..1911069) Desulfovibrio vulgaris str. 'Miyazaki F' 7173458 YP_002435964.1 CDS DvMF_1548 NC_011769.1 1911304 1912083 R TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; KEGG: dde:Dde_0519 lipoprotein A; lipoprotein A complement(1911304..1912083) Desulfovibrio vulgaris str. 'Miyazaki F' 7173459 YP_002435965.1 CDS DvMF_1549 NC_011769.1 1912568 1914397 R PFAM: pyruvate carboxyltransferase; KEGG: dde:Dde_0520 HMGL-like domain-containing protein; pyruvate carboxyltransferase complement(1912568..1914397) Desulfovibrio vulgaris str. 'Miyazaki F' 7173460 YP_002435966.1 CDS DvMF_1550 NC_011769.1 1914400 1915182 R KEGG: dde:Dde_0521 hypothetical protein; hypothetical protein complement(1914400..1915182) Desulfovibrio vulgaris str. 'Miyazaki F' 7173461 YP_002435967.1 CDS DvMF_1551 NC_011769.1 1915395 1916093 R KEGG: dde:Dde_0523 hypothetical protein; hypothetical protein complement(1915395..1916093) Desulfovibrio vulgaris str. 'Miyazaki F' 7173462 YP_002435968.1 CDS DvMF_1552 NC_011769.1 1916224 1916481 R KEGG: dde:Dde_0524 hypothetical protein; hypothetical protein complement(1916224..1916481) Desulfovibrio vulgaris str. 'Miyazaki F' 7173463 YP_002435969.1 CDS DvMF_1553 NC_011769.1 1917013 1918326 D KEGG: dde:Dde_0526 sulfite reductase, dissimilatory-type subunit alpha; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type subunit alpha 1917013..1918326 Desulfovibrio vulgaris str. 'Miyazaki F' 7173464 YP_002435970.1 CDS DvMF_1554 NC_011769.1 1918345 1919490 D KEGG: dde:Dde_0527 sulfite reductase, dissimilatory-type subunit beta; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type subunit beta 1918345..1919490 Desulfovibrio vulgaris str. 'Miyazaki F' 7173465 YP_002435971.1 CDS DvMF_1555 NC_011769.1 1919554 1919787 D PFAM: Dissimilatory sulfite reductase D; KEGG: dde:Dde_0528 dissimilatory sulfite reductase B; dissimilatory sulfite reductase D 1919554..1919787 Desulfovibrio vulgaris str. 'Miyazaki F' 7173466 YP_002435972.1 CDS DvMF_1556 NC_011769.1 1919938 1921626 D TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dde:Dde_0529 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1919938..1921626 Desulfovibrio vulgaris str. 'Miyazaki F' 7173467 YP_002435973.1 CDS DvMF_1557 NC_011769.1 1922088 1922984 D KEGG: dde:Dde_2627 hypothetical protein; hypothetical protein 1922088..1922984 Desulfovibrio vulgaris str. 'Miyazaki F' 7173468 YP_002435974.1 CDS DvMF_1558 NC_011769.1 1923113 1923562 D PFAM: regulatory protein MarR; KEGG: pmy:Pmen_1814 MarR family transcriptional regulator; MarR family transcriptional regulator 1923113..1923562 Desulfovibrio vulgaris str. 'Miyazaki F' 7173469 YP_002435975.1 CDS DvMF_1559 NC_011769.1 1923649 1925157 D PFAM: sodium/sulfate symporter; citrate transporter; KEGG: mag:amb4188 di- and tricarboxylate transporters; sodium/sulfate symporter 1923649..1925157 Desulfovibrio vulgaris str. 'Miyazaki F' 7173470 YP_002435976.1 CDS DvMF_1560 NC_011769.1 1925395 1925688 R PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_0517 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(1925395..1925688) Desulfovibrio vulgaris str. 'Miyazaki F' 7173471 YP_002435977.1 CDS DvMF_1561 NC_011769.1 1925715 1926134 R PFAM: histidine triad (HIT) protein; KEGG: lip:LI0430 141aa long hypothetical histidine triad nucleotide-binding protein; histidine triad (HIT) protein complement(1925715..1926134) Desulfovibrio vulgaris str. 'Miyazaki F' 7173472 YP_002435978.1 CDS DvMF_1562 NC_011769.1 1926567 1927772 D PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: lip:LI0429 coproporphyrinogen III oxidase and related Fe-S oxidoreductases; radical SAM protein 1926567..1927772 Desulfovibrio vulgaris str. 'Miyazaki F' 7173473 YP_002435979.1 CDS DvMF_1563 NC_011769.1 1927836 1929035 R TIGRFAM: uracil-DNA glycosylase; PFAM: uracil-DNA glycosylase superfamily; KEGG: shn:Shewana3_3221 uracil-DNA glycosylase; uracil-DNA glycosylase complement(1927836..1929035) Desulfovibrio vulgaris str. 'Miyazaki F' 7173474 YP_002435980.1 CDS DvMF_1564 NC_011769.1 1929036 1930238 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; KEGG: dde:Dde_0513 aminotransferase; class I and II aminotransferase complement(1929036..1930238) Desulfovibrio vulgaris str. 'Miyazaki F' 7173475 YP_002435981.1 CDS DvMF_1565 NC_011769.1 1930611 1931303 D KEGG: dde:Dde_0512 hypothetical protein; hypothetical protein 1930611..1931303 Desulfovibrio vulgaris str. 'Miyazaki F' 7173476 YP_002435982.1 CDS DvMF_1566 NC_011769.1 1931444 1933318 R hypothetical protein complement(1931444..1933318) Desulfovibrio vulgaris str. 'Miyazaki F' 7173477 YP_002435983.1 CDS DvMF_1567 NC_011769.1 1933443 1934867 R PFAM: FAD linked oxidase; KEGG: dde:Dde_0182 D-lactate dehydrogenase (cytochrome); D-lactate dehydrogenase complement(1933443..1934867) Desulfovibrio vulgaris str. 'Miyazaki F' 7173478 YP_002435984.1 CDS DvMF_1568 NC_011769.1 1934970 1935644 R TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0183 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein complement(1934970..1935644) Desulfovibrio vulgaris str. 'Miyazaki F' 7173479 YP_002435985.1 CDS DvMF_1569 NC_011769.1 1935644 1936429 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0184 ATPase; ABC transporter complement(1935644..1936429) Desulfovibrio vulgaris str. 'Miyazaki F' 7173480 YP_002435986.1 CDS DvMF_1570 NC_011769.1 1936440 1937120 R TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0185 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein complement(1936440..1937120) Desulfovibrio vulgaris str. 'Miyazaki F' 7173481 YP_002435987.1 CDS DvMF_1571 NC_011769.1 1937297 1938046 R PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0186 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(1937297..1938046) Desulfovibrio vulgaris str. 'Miyazaki F' 7173482 YP_002435988.1 CDS DvMF_1572 NC_011769.1 1938349 1938921 D PFAM: flavin reductase domain protein FMN-binding; KEGG: dde:Dde_0187 flavoredoxin; flavin reductase domain-containing FMN-binding protein 1938349..1938921 Desulfovibrio vulgaris str. 'Miyazaki F' 7173483 YP_002435989.1 CDS DvMF_1573 NC_011769.1 1939091 1940503 D KEGG: lip:LI0512 sugar transferases involved in lipopolysaccharide synthesis; TIGRFAM: undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; undecaprenyl-phosphate galactose phosphotransferase, WbaP 1939091..1940503 Desulfovibrio vulgaris str. 'Miyazaki F' 7173484 YP_002435990.1 CDS DvMF_1574 NC_011769.1 1940552 1941691 D PFAM: glycosyl transferase family 9; KEGG: bxe:Bxe_A3715 hypothetical protein; glycosyl transferase family protein 1940552..1941691 Desulfovibrio vulgaris str. 'Miyazaki F' 7173485 YP_002435991.1 CDS DvMF_1575 NC_011769.1 1941786 1943498 R TIGRFAM: sulfate transporter; PFAM: sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: dde:Dde_2506 sulfate permease; sulfate transporter complement(1941786..1943498) Desulfovibrio vulgaris str. 'Miyazaki F' 7173486 YP_002435992.1 CDS DvMF_1576 NC_011769.1 1944294 1945604 R PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: scl:sce0089 AraC family transcriptional regulator; AraC family transcriptional regulator complement(1944294..1945604) Desulfovibrio vulgaris str. 'Miyazaki F' 7173487 YP_002435993.1 CDS DvMF_1577 NC_011769.1 1945775 1946011 R KEGG: dde:Dde_3025 hypothetical protein; hypothetical protein complement(1945775..1946011) Desulfovibrio vulgaris str. 'Miyazaki F' 7173488 YP_002435994.1 CDS DvMF_1578 NC_011769.1 1947107 1947307 D hypothetical protein 1947107..1947307 Desulfovibrio vulgaris str. 'Miyazaki F' 7173492 YP_002435995.1 CDS DvMF_1579 NC_011769.1 1947345 1948133 D PFAM: polysaccharide deacetylase; KEGG: mag:amb2885 xylanase/chitin deacetylase; polysaccharide deacetylase 1947345..1948133 Desulfovibrio vulgaris str. 'Miyazaki F' 7173493 YP_002435996.1 CDS DvMF_1580 NC_011769.1 1948892 1950076 D PFAM: extracellular ligand-binding receptor; KEGG: sfu:Sfum_0314 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1948892..1950076 Desulfovibrio vulgaris str. 'Miyazaki F' 7173494 YP_002435997.1 CDS DvMF_1581 NC_011769.1 1950400 1951326 D PFAM: inner-membrane translocator; KEGG: sfu:Sfum_0313 inner-membrane translocator; inner-membrane translocator 1950400..1951326 Desulfovibrio vulgaris str. 'Miyazaki F' 7173495 YP_002435998.1 CDS DvMF_1582 NC_011769.1 1951323 1952264 D PFAM: inner-membrane translocator; KEGG: pth:PTH_0460 ABC-type branched-chain amino acid transporter, permeasecomponent; branched-chain amino acid ABC transporter permease 1951323..1952264 Desulfovibrio vulgaris str. 'Miyazaki F' 7173496 YP_002435999.1 CDS DvMF_1583 NC_011769.1 1952261 1952983 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gsu:GSU2008 branched-chain amino acid ABC transporter ATP-binding protein; branched-chain amino acid ABC transporter ATP-binding protein 1952261..1952983 Desulfovibrio vulgaris str. 'Miyazaki F' 7173497 YP_002436000.1 CDS DvMF_1584 NC_011769.1 1952976 1953680 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_0310 ABC transporter; ABC transporter 1952976..1953680 Desulfovibrio vulgaris str. 'Miyazaki F' 7173498 YP_002436001.1 CDS DvMF_1585 NC_011769.1 1953720 1954373 D PFAM: CBS domain containing protein; KEGG: dde:Dde_0765 CBS; hypothetical protein 1953720..1954373 Desulfovibrio vulgaris str. 'Miyazaki F' 7173499 YP_002436002.1 CDS DvMF_1586 NC_011769.1 1954748 1955749 D PFAM: extracellular solute-binding protein family 1; KEGG: pmu:PM1457 hypothetical protein; extracellular solute-binding protein 1954748..1955749 Desulfovibrio vulgaris str. 'Miyazaki F' 7173500 YP_002436003.1 CDS DvMF_1587 NC_011769.1 1955919 1957019 D PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: asu:Asuc_1717 ABC transporter; ABC transporter 1955919..1957019 Desulfovibrio vulgaris str. 'Miyazaki F' 7173501 YP_002436004.1 CDS DvMF_1588 NC_011769.1 1957021 1958712 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: pmu:PM1455 AfuB; binding-protein-dependent transporters inner membrane component 1957021..1958712 Desulfovibrio vulgaris str. 'Miyazaki F' 7173502 YP_002436005.1 CDS DvMF_1589 NC_011769.1 1958723 1959787 D PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: pmu:PM1454 MsmK; ABC transporter 1958723..1959787 Desulfovibrio vulgaris str. 'Miyazaki F' 7173503 YP_002436006.1 CDS DvMF_1590 NC_011769.1 1960345 1962525 D PFAM: glutamine synthetase; KEGG: dde:Dde_0102 glutamine synthetaseII; glutamine synthetase 1960345..1962525 Desulfovibrio vulgaris str. 'Miyazaki F' 7173504 YP_002436007.1 CDS DvMF_1591 NC_011769.1 1962768 1963142 D KEGG: dde:Dde_0268 hypothetical protein; hypothetical protein 1962768..1963142 Desulfovibrio vulgaris str. 'Miyazaki F' 7173505 YP_002436008.1 CDS DvMF_1592 NC_011769.1 1964121 1965011 D KEGG: ret:RHE_CH02651 hypothetical protein; hypothetical protein 1964121..1965011 Desulfovibrio vulgaris str. 'Miyazaki F' 7173506 YP_002436009.1 CDS DvMF_1593 NC_011769.1 1966029 1966409 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: sfu:Sfum_0199 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 1966029..1966409 Desulfovibrio vulgaris str. 'Miyazaki F' 7173507 YP_002436010.1 CDS DvMF_1594 NC_011769.1 1966385 1966948 D KEGG: ote:Oter_0744 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase subunit beta; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit beta 1966385..1966948 Desulfovibrio vulgaris str. 'Miyazaki F' 7173508 YP_002436011.1 CDS DvMF_1595 NC_011769.1 1966945 1967550 D PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: dps:DP1319 NADH dehydrogenase, subunit 9; NADH dehydrogenase (ubiquinone) 30 kDa subunit 1966945..1967550 Desulfovibrio vulgaris str. 'Miyazaki F' 7173509 YP_002436012.1 CDS DvMF_1596 NC_011769.1 1967543 1968763 D PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: dps:DP1318 NADH dehydrogenase, subunit 7; NADH dehydrogenase (quinone) 1967543..1968763 Desulfovibrio vulgaris str. 'Miyazaki F' 7173510 YP_002436013.1 CDS DvMF_1597 NC_011769.1 1968770 1969744 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sfu:Sfum_0203 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) 1968770..1969744 Desulfovibrio vulgaris str. 'Miyazaki F' 7173511 YP_002436014.1 CDS DvMF_1598 NC_011769.1 1969948 1970571 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ote:Oter_0748 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1969948..1970571 Desulfovibrio vulgaris str. 'Miyazaki F' 7173512 YP_002436015.1 CDS DvMF_1599 NC_011769.1 1970573 1971079 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: rrs:RoseRS_2995 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 1970573..1971079 Desulfovibrio vulgaris str. 'Miyazaki F' 7173513 YP_002436016.1 CDS DvMF_1600 NC_011769.1 1971076 1971390 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: sfu:Sfum_0206 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L 1971076..1971390 Desulfovibrio vulgaris str. 'Miyazaki F' 7173514 YP_002436017.1 CDS DvMF_1601 NC_011769.1 1971390 1972889 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 1971390..1972889 Desulfovibrio vulgaris str. 'Miyazaki F' 7173515 YP_002436018.1 CDS DvMF_1602 NC_011769.1 1972900 1973157 D KEGG: ote:Oter_0752 hypothetical protein; hypothetical protein 1972900..1973157 Desulfovibrio vulgaris str. 'Miyazaki F' 7173516 YP_002436019.1 CDS DvMF_1603 NC_011769.1 1973144 1974928 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit D 1973144..1974928 Desulfovibrio vulgaris str. 'Miyazaki F' 7173517 YP_002436020.1 CDS DvMF_1604 NC_011769.1 1974962 1976521 D KEGG: ote:Oter_0754 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1974962..1976521 Desulfovibrio vulgaris str. 'Miyazaki F' 7173518 YP_002436021.1 CDS DvMF_1605 NC_011769.1 1976518 1977945 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ote:Oter_0755 proton-translocating NADH-quinone oxidoreductase, chain N; NADH dehydrogenase (quinone) 1976518..1977945 Desulfovibrio vulgaris str. 'Miyazaki F' 7173519 YP_002436022.1 CDS DvMF_1606 NC_011769.1 1978169 1979344 D KEGG: met:M446_0014 hypothetical protein; hypothetical protein 1978169..1979344 Desulfovibrio vulgaris str. 'Miyazaki F' 7173520 YP_002436023.1 CDS DvMF_1607 NC_011769.1 1979489 1980199 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ppd:Ppro_3481 two component LuxR family transcriptional regulator; LuxR family transcriptional regulator complement(1979489..1980199) Desulfovibrio vulgaris str. 'Miyazaki F' 7173521 YP_002436024.1 CDS DvMF_1608 NC_011769.1 1980187 1981884 R PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: gme:Gmet_2788 histidine kinase; histidine kinase complement(1980187..1981884) Desulfovibrio vulgaris str. 'Miyazaki F' 7173522 YP_002436025.1 CDS DvMF_1609 NC_011769.1 1981997 1982851 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1379 cytoplasmic chaperone TorD; cytoplasmic chaperone TorD family protein complement(1981997..1982851) Desulfovibrio vulgaris str. 'Miyazaki F' 7173523 YP_002436026.1 CDS DvMF_1610 NC_011769.1 1982935 1983810 R KEGG: sth:STH2330 anaerobic dimethyl sulfoxide reductase subunit C; anaerobic dimethyl sulfoxide reductase subunit C complement(1982935..1983810) Desulfovibrio vulgaris str. 'Miyazaki F' 7173524 YP_002436027.1 CDS DvMF_1611 NC_011769.1 1983815 1984432 R TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pac:PPA0516 anaerobic dimethyl sulfoxide reductase, chain B; dimethylsulfoxide reductase subunit B complement(1983815..1984432) Desulfovibrio vulgaris str. 'Miyazaki F' 7173525 YP_002436028.1 CDS DvMF_1612 NC_011769.1 1984422 1986884 R TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: apl:APL_1674 anaerobic dimethyl sulfoxide reductase chain A precursor; anaerobic dimethyl sulfoxide reductase subunit A complement(1984422..1986884) Desulfovibrio vulgaris str. 'Miyazaki F' 7173526 YP_002436029.1 CDS DvMF_1613 NC_011769.1 1987501 1989144 D PFAM: molybdopterin binding domain; formylmethanofuran dehydrogenase subunit E region; KEGG: sfu:Sfum_0032 molybdopterin binding domain; formylmethanofuran dehydrogenase subunit E 1987501..1989144 Desulfovibrio vulgaris str. 'Miyazaki F' 7173527 YP_002436030.1 CDS DvMF_1614 NC_011769.1 1989372 1990472 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bte:BTH_I1692 AraC family transcriptional regulator; AraC family transcriptional regulator 1989372..1990472 Desulfovibrio vulgaris str. 'Miyazaki F' 7173528 YP_002436031.1 CDS DvMF_1615 NC_011769.1 1990770 1991183 D KEGG: amt:Amet_1548 hypothetical protein; hypothetical protein 1990770..1991183 Desulfovibrio vulgaris str. 'Miyazaki F' 7173529 YP_002436032.1 CDS DvMF_1616 NC_011769.1 1991555 1991902 D hypothetical protein 1991555..1991902 Desulfovibrio vulgaris str. 'Miyazaki F' 7173530 YP_002436033.1 CDS DvMF_1617 NC_011769.1 1991877 1992545 D PFAM: flagellar hook capping protein; KEGG: bph:Bphy_2950 flagellar hook capping protein; flagellar hook capping protein 1991877..1992545 Desulfovibrio vulgaris str. 'Miyazaki F' 7173531 YP_002436034.1 CDS DvMF_1618 NC_011769.1 1992579 1994156 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: dde:Dde_1711 flagellar hook protein FlgE; hypothetical protein 1992579..1994156 Desulfovibrio vulgaris str. 'Miyazaki F' 7173532 YP_002436035.1 CDS DvMF_1619 NC_011769.1 1994374 1996446 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3152 flagellar hook-associated protein; flagellar hook-associated protein FlgK 1994374..1996446 Desulfovibrio vulgaris str. 'Miyazaki F' 7173533 YP_002436036.1 CDS DvMF_1620 NC_011769.1 1996482 1997975 D TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL; flagellar hook-associated protein 3 1996482..1997975 Desulfovibrio vulgaris str. 'Miyazaki F' 7173534 YP_002436037.1 CDS DvMF_1621 NC_011769.1 1998119 1999858 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: dde:Dde_1120 flagellar hook-associated protein 2; flagellar hook-associated protein 2 domain-containing protein 1998119..1999858 Desulfovibrio vulgaris str. 'Miyazaki F' 7173535 YP_002436038.1 CDS DvMF_1622 NC_011769.1 2000204 2001091 R PFAM: flagellin domain protein; KEGG: dde:Dde_1502 flagellin; flagellin domain-containing protein complement(2000204..2001091) Desulfovibrio vulgaris str. 'Miyazaki F' 7173536 YP_002436039.1 CDS DvMF_1623 NC_011769.1 2001338 2001949 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: rso:RSc2361 RNA polymerase sigma-E factor sigma-24 homolog transcription regulator protein; ECF subfamily RNA polymerase sigma-24 subunit complement(2001338..2001949) Desulfovibrio vulgaris str. 'Miyazaki F' 7173537 YP_002436040.1 CDS DvMF_1624 NC_011769.1 2002236 2003072 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mca:MCA2279 DNA-binding response regulator; two component transcriptional regulator, winged helix family 2002236..2003072 Desulfovibrio vulgaris str. 'Miyazaki F' 7173538 YP_002436041.1 CDS DvMF_1625 NC_011769.1 2003053 2004765 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: scl:sce4827 hypothetical protein; integral membrane sensor signal transduction histidine kinase 2003053..2004765 Desulfovibrio vulgaris str. 'Miyazaki F' 7173539 YP_002436042.1 CDS DvMF_1626 NC_011769.1 2005035 2005523 R PFAM: Calcium-binding EF-hand-containing protein; KEGG: gbe:GbCGDNIH1_1190 hypothetical secreted protein; calcium-binding domain-containing protein complement(2005035..2005523) Desulfovibrio vulgaris str. 'Miyazaki F' 7173540 YP_002436043.1 CDS DvMF_1627 NC_011769.1 2005520 2007136 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pca:Pcar_0814 outer membrane protein; NodT family RND efflux system outer membrane lipoprotein complement(2005520..2007136) Desulfovibrio vulgaris str. 'Miyazaki F' 7173541 YP_002436044.1 CDS DvMF_1628 NC_011769.1 2007133 2008284 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: mca:MCA1810 hypothetical protein; RND family efflux transporter MFP subunit complement(2007133..2008284) Desulfovibrio vulgaris str. 'Miyazaki F' 7173542 YP_002436045.1 CDS DvMF_1629 NC_011769.1 2008369 2009316 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mca:MCA1809 ABC transporter ATP-binding protein; ABC transporter complement(2008369..2009316) Desulfovibrio vulgaris str. 'Miyazaki F' 7173543 YP_002436046.1 CDS DvMF_1630 NC_011769.1 2009359 2010507 R PFAM: protein of unknown function DUF214; KEGG: mca:MCA1808 ABC-transporter permease; hypothetical protein complement(2009359..2010507) Desulfovibrio vulgaris str. 'Miyazaki F' 7173544 YP_002436047.1 CDS DvMF_1631 NC_011769.1 2010857 2011684 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo2745 probable DNA-binding response regulator; two component transcriptional regulator, winged helix family 2010857..2011684 Desulfovibrio vulgaris str. 'Miyazaki F' 7173545 YP_002436048.1 CDS DvMF_1632 NC_011769.1 2011681 2013288 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: eba:ebA4466 histidine kinase-like ATPase; integral membrane sensor signal transduction histidine kinase 2011681..2013288 Desulfovibrio vulgaris str. 'Miyazaki F' 7173546 YP_002436049.1 CDS DvMF_1633 NC_011769.1 2013655 2015985 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_1665 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 2013655..2015985 Desulfovibrio vulgaris str. 'Miyazaki F' 7173547 YP_002436050.1 CDS DvMF_1634 NC_011769.1 2016313 2016570 D KEGG: bav:BAV1312A phage protein; phage protein 2016313..2016570 Desulfovibrio vulgaris str. 'Miyazaki F' 7173548 YP_002436051.1 CDS DvMF_1635 NC_011769.1 2016554 2016892 D PFAM: helix-turn-helix domain protein; KEGG: bav:BAV1312 phage DNA-binding protein; XRE family transcriptional regulator 2016554..2016892 Desulfovibrio vulgaris str. 'Miyazaki F' 7173549 YP_002436052.1 CDS DvMF_1636 NC_011769.1 2016944 2017444 R KEGG: nmu:Nmul_A1447 hypothetical protein; hypothetical protein complement(2016944..2017444) Desulfovibrio vulgaris str. 'Miyazaki F' 7173550 YP_002436053.1 CDS DvMF_1637 NC_011769.1 2017448 2017771 R KEGG: nmu:Nmul_A1448 hypothetical protein; hypothetical protein complement(2017448..2017771) Desulfovibrio vulgaris str. 'Miyazaki F' 7173551 YP_002436054.1 CDS DvMF_1638 NC_011769.1 2017774 2018379 R KEGG: nmu:Nmul_A1449 hypothetical protein; hypothetical protein complement(2017774..2018379) Desulfovibrio vulgaris str. 'Miyazaki F' 7173552 YP_002436055.1 CDS DvMF_1639 NC_011769.1 2018379 2021135 R KEGG: mag:amb0395 hypothetical protein; Phage-related protein tail component-like protein complement(2018379..2021135) Desulfovibrio vulgaris str. 'Miyazaki F' 7173553 YP_002436056.1 CDS DvMF_1640 NC_011769.1 2021174 2021533 R KEGG: sfu:Sfum_1892 hypothetical protein; hypothetical protein complement(2021174..2021533) Desulfovibrio vulgaris str. 'Miyazaki F' 7173554 YP_002436057.1 CDS DvMF_1641 NC_011769.1 2021613 2022518 R KEGG: sfu:Sfum_1891 phage-related protein-like; hypothetical protein complement(2021613..2022518) Desulfovibrio vulgaris str. 'Miyazaki F' 7173555 YP_002436058.1 CDS DvMF_1642 NC_011769.1 2022521 2022874 R hypothetical protein complement(2022521..2022874) Desulfovibrio vulgaris str. 'Miyazaki F' 7173556 YP_002436059.1 CDS DvMF_1643 NC_011769.1 2022877 2025693 R TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein; phage tape measure protein complement(2022877..2025693) Desulfovibrio vulgaris str. 'Miyazaki F' 7173557 YP_002436060.1 CDS DvMF_1644 NC_011769.1 2025799 2026587 D KEGG: pfl:PFL_3748 hypothetical protein; hypothetical protein 2025799..2026587 Desulfovibrio vulgaris str. 'Miyazaki F' 7173558 YP_002436061.1 CDS DvMF_1645 NC_011769.1 2026839 2027723 D PFAM: BRO domain protein; KEGG: vco:VC0395_1058 BRO family, N-domain protein; prophage antirepressor 2026839..2027723 Desulfovibrio vulgaris str. 'Miyazaki F' 7173559 YP_002436062.1 CDS DvMF_1646 NC_011769.1 2027973 2028872 D KEGG: spz:M5005_Spy_1051 phage protein; phage protein 2027973..2028872 Desulfovibrio vulgaris str. 'Miyazaki F' 7173560 YP_002436063.1 CDS DvMF_1648 NC_011769.1 2029152 2029499 R KEGG: hch:HCH_04547 hypothetical protein; hypothetical protein complement(2029152..2029499) Desulfovibrio vulgaris str. 'Miyazaki F' 7173562 YP_002436064.1 CDS DvMF_1649 NC_011769.1 2029510 2029929 R KEGG: bph:Bphy_7150 hypothetical protein; hypothetical protein complement(2029510..2029929) Desulfovibrio vulgaris str. 'Miyazaki F' 7173563 YP_002436065.1 CDS DvMF_1650 NC_011769.1 2029945 2030313 R KEGG: rsh:Rsph17029_3324 hypothetical protein; hypothetical protein complement(2029945..2030313) Desulfovibrio vulgaris str. 'Miyazaki F' 7173564 YP_002436066.1 CDS DvMF_1651 NC_011769.1 2030300 2030698 R hypothetical protein complement(2030300..2030698) Desulfovibrio vulgaris str. 'Miyazaki F' 7173565 YP_002436067.1 CDS DvMF_1652 NC_011769.1 2030698 2031012 R TIGRFAM: phage head-tail adaptor; PFAM: head-tail adaptor protein; KEGG: asu:Asuc_1242 phage head-tail adaptor; phage head-tail adaptor complement(2030698..2031012) Desulfovibrio vulgaris str. 'Miyazaki F' 7173566 YP_002436068.1 CDS DvMF_1653 NC_011769.1 2031015 2031599 R KEGG: pla:Plav_0908 phage conserved hypothetical protein, phiE125 gp8; phage conserved hypothetical protein, phiE125 gp8 complement(2031015..2031599) Desulfovibrio vulgaris str. 'Miyazaki F' 7173567 YP_002436069.1 CDS DvMF_1654 NC_011769.1 2031596 2031775 R hypothetical protein complement(2031596..2031775) Desulfovibrio vulgaris str. 'Miyazaki F' 7173568 YP_002436070.1 CDS DvMF_1655 NC_011769.1 2031821 2033041 R TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: spq:SPAB_02163 hypothetical protein; phage major capsid protein, HK97 family complement(2031821..2033041) Desulfovibrio vulgaris str. 'Miyazaki F' 7173569 YP_002436071.1 CDS DvMF_1656 NC_011769.1 2033054 2033755 R TIGRFAM: phage prohead protease HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: smd:Smed_1335 phage prohead protease HK97 family; phage prohead protease HK97 family complement(2033054..2033755) Desulfovibrio vulgaris str. 'Miyazaki F' 7173570 YP_002436072.1 CDS DvMF_1657 NC_011769.1 2033742 2034968 R TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: smd:Smed_1336 phage portal protein, HK97 family; phage portal protein, HK97 family complement(2033742..2034968) Desulfovibrio vulgaris str. 'Miyazaki F' 7173571 YP_002436073.1 CDS DvMF_1658 NC_011769.1 2034968 2036665 R PFAM: terminase; KEGG: bph:Bphy_7140 terminase; terminase complement(2034968..2036665) Desulfovibrio vulgaris str. 'Miyazaki F' 7173572 YP_002436074.1 CDS DvMF_1659 NC_011769.1 2036658 2037131 R KEGG: sew:SeSA_A4461 phage terminase, small subunit, P27 family; phage terminase small subunit complement(2036658..2037131) Desulfovibrio vulgaris str. 'Miyazaki F' 7173573 YP_002436075.1 CDS DvMF_1660 NC_011769.1 2037204 2037599 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bpm:BURPS1710b_1677 GP70; HNH endonuclease complement(2037204..2037599) Desulfovibrio vulgaris str. 'Miyazaki F' 7173574 YP_002436076.1 CDS DvMF_1661 NC_011769.1 2038125 2038472 R hypothetical protein complement(2038125..2038472) Desulfovibrio vulgaris str. 'Miyazaki F' 7173575 YP_002436077.1 CDS DvMF_1662 NC_011769.1 2038454 2038684 R KEGG: hch:HCH_02889 hypothetical protein; hypothetical protein complement(2038454..2038684) Desulfovibrio vulgaris str. 'Miyazaki F' 7173576 YP_002436078.1 CDS DvMF_1663 NC_011769.1 2038656 2039039 R KEGG: psp:PSPPH_1890 hypothetical protein; hypothetical protein complement(2038656..2039039) Desulfovibrio vulgaris str. 'Miyazaki F' 7173577 YP_002436079.1 CDS DvMF_1664 NC_011769.1 2039042 2039449 R KEGG: mag:amb1193 hypothetical protein; hypothetical protein complement(2039042..2039449) Desulfovibrio vulgaris str. 'Miyazaki F' 7173578 YP_002436080.1 CDS DvMF_1666 NC_011769.1 2039862 2040881 R PFAM: acyltransferase 3; KEGG: pat:Patl_1185 acyltransferase 3; acyltransferase 3 complement(2039862..2040881) Desulfovibrio vulgaris str. 'Miyazaki F' 7173580 YP_002436081.1 CDS DvMF_1667 NC_011769.1 2041199 2041420 R hypothetical protein complement(2041199..2041420) Desulfovibrio vulgaris str. 'Miyazaki F' 7173581 YP_002436082.1 CDS DvMF_1668 NC_011769.1 2041542 2041820 D PFAM: plasmid maintenance system killer; KEGG: mag:amb0661 plasmid maintenance system killer protein; plasmid maintenance system killer protein 2041542..2041820 Desulfovibrio vulgaris str. 'Miyazaki F' 7173582 YP_002436083.1 CDS DvMF_1669 NC_011769.1 2041831 2042136 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: mag:amb0660 plasmid maintenance system antidote protein; XRE family transcriptional regulator 2041831..2042136 Desulfovibrio vulgaris str. 'Miyazaki F' 7173583 YP_002436084.1 CDS DvMF_1670 NC_011769.1 2042145 2042438 R KEGG: smt:Smal_2507 hypothetical protein; hypothetical protein complement(2042145..2042438) Desulfovibrio vulgaris str. 'Miyazaki F' 7173584 YP_002436085.1 CDS DvMF_1671 NC_011769.1 2042609 2043241 R hypothetical protein complement(2042609..2043241) Desulfovibrio vulgaris str. 'Miyazaki F' 7173585 YP_002436086.1 CDS DvMF_1672 NC_011769.1 2043238 2044095 R KEGG: hmo:HM1_0053 hypothetical protein; hypothetical protein complement(2043238..2044095) Desulfovibrio vulgaris str. 'Miyazaki F' 7173586 YP_002436087.1 CDS DvMF_1673 NC_011769.1 2045240 2045662 R KEGG: dde:Dde_1017 hypothetical protein; hypothetical protein complement(2045240..2045662) Desulfovibrio vulgaris str. 'Miyazaki F' 7173587 YP_002436088.1 CDS DvMF_1674 NC_011769.1 2045722 2045961 D hypothetical protein 2045722..2045961 Desulfovibrio vulgaris str. 'Miyazaki F' 7173588 YP_002436089.1 CDS DvMF_1675 NC_011769.1 2046195 2046419 D KEGG: eli:ELI_07875 hypothetical protein; hypothetical protein 2046195..2046419 Desulfovibrio vulgaris str. 'Miyazaki F' 7173589 YP_002436090.1 CDS DvMF_1676 NC_011769.1 2046529 2046957 D KEGG: ath:AT1G01660 U-box domain-containing protein; hypothetical protein 2046529..2046957 Desulfovibrio vulgaris str. 'Miyazaki F' 7173590 YP_002436091.1 CDS DvMF_1677 NC_011769.1 2046989 2047396 R hypothetical protein complement(2046989..2047396) Desulfovibrio vulgaris str. 'Miyazaki F' 7173591 YP_002436092.1 CDS DvMF_1678 NC_011769.1 2047780 2048514 D PFAM: peptidase S24 and S26 domain protein; KEGG: mca:MCA2959 prophage MuMc02, S24 family peptidase; phage repressor 2047780..2048514 Desulfovibrio vulgaris str. 'Miyazaki F' 7173592 YP_002436093.1 CDS DvMF_1679 NC_011769.1 2048623 2049342 D hypothetical protein 2048623..2049342 Desulfovibrio vulgaris str. 'Miyazaki F' 7173593 YP_002436094.1 CDS DvMF_1680 NC_011769.1 2050039 2050185 D hypothetical protein 2050039..2050185 Desulfovibrio vulgaris str. 'Miyazaki F' 7173594 YP_002436095.1 CDS DvMF_1681 NC_011769.1 2050188 2050478 D hypothetical protein 2050188..2050478 Desulfovibrio vulgaris str. 'Miyazaki F' 7173595 YP_002436096.1 CDS DvMF_1682 NC_011769.1 2050535 2051584 D KEGG: gsu:GSU2152 hypothetical protein; hypothetical protein 2050535..2051584 Desulfovibrio vulgaris str. 'Miyazaki F' 7173596 YP_002436097.1 CDS DvMF_1683 NC_011769.1 2051587 2052486 D PFAM: protein of unknown function DUF1351; KEGG: cpy:Cphy_2989 hypothetical protein; hypothetical protein 2051587..2052486 Desulfovibrio vulgaris str. 'Miyazaki F' 7173597 YP_002436098.1 CDS DvMF_1684 NC_011769.1 2052503 2053411 D KEGG: cel:K09A9.6 K09A9.6a; hypothetical protein 2052503..2053411 Desulfovibrio vulgaris str. 'Miyazaki F' 7173598 YP_002436099.1 CDS DvMF_1685 NC_011769.1 2053441 2053764 D hypothetical protein 2053441..2053764 Desulfovibrio vulgaris str. 'Miyazaki F' 7173599 YP_002436100.1 CDS DvMF_1686 NC_011769.1 2053922 2054101 D hypothetical protein 2053922..2054101 Desulfovibrio vulgaris str. 'Miyazaki F' 7173600 YP_002436101.1 CDS DvMF_1687 NC_011769.1 2054443 2055510 D PFAM: integrase family protein; KEGG: dde:Dde_0620 hypothetical protein; integrase family protein 2054443..2055510 Desulfovibrio vulgaris str. 'Miyazaki F' 7173601 YP_002436102.1 CDS DvMF_1688 NC_011769.1 2055925 2057079 D hypothetical protein 2055925..2057079 Desulfovibrio vulgaris str. 'Miyazaki F' 7173603 YP_002436103.1 CDS DvMF_1689 NC_011769.1 2057395 2057658 R hypothetical protein complement(2057395..2057658) Desulfovibrio vulgaris str. 'Miyazaki F' 7173604 YP_002436104.1 CDS DvMF_1690 NC_011769.1 2057686 2059362 R PFAM: polysaccharide export protein; KEGG: amc:MADE_03058 capsular polysaccharide transporter; polysaccharide export protein complement(2057686..2059362) Desulfovibrio vulgaris str. 'Miyazaki F' 7173605 YP_002436105.1 CDS DvMF_1691 NC_011769.1 2059590 2059991 R hypothetical protein complement(2059590..2059991) Desulfovibrio vulgaris str. 'Miyazaki F' 7173606 YP_002436106.1 CDS DvMF_1692 NC_011769.1 2060288 2061853 R KEGG: dde:Dde_0659 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; ATPase AAA; Fis family transcriptional regulator complement(2060288..2061853) Desulfovibrio vulgaris str. 'Miyazaki F' 7173607 YP_002436107.1 CDS DvMF_1693 NC_011769.1 2062308 2064083 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0657 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 2062308..2064083 Desulfovibrio vulgaris str. 'Miyazaki F' 7173608 YP_002436108.1 CDS DvMF_1694 NC_011769.1 2064128 2065822 D KEGG: sfu:Sfum_0090 cytochrome C family protein; cytochrome C family protein 2064128..2065822 Desulfovibrio vulgaris str. 'Miyazaki F' 7173609 YP_002436109.1 CDS DvMF_1695 NC_011769.1 2065825 2066454 D PFAM: cytochrome B561; KEGG: dol:Dole_3004 cytochrome b561; cytochrome B561 2065825..2066454 Desulfovibrio vulgaris str. 'Miyazaki F' 7173610 YP_002436110.1 CDS DvMF_1696 NC_011769.1 2066887 2068095 R PFAM: phosphoglycerate mutase; 6-phosphofructo-2-kinase; KEGG: dde:Dde_0511 6-phosphofructo-2-kinase; phosphoglycerate mutase complement(2066887..2068095) Desulfovibrio vulgaris str. 'Miyazaki F' 7173611 YP_002436111.1 CDS DvMF_1697 NC_011769.1 2068559 2068888 D KEGG: scl:sce6981 conserved carbohydrate-binding protein, rhs family; hypothetical protein 2068559..2068888 Desulfovibrio vulgaris str. 'Miyazaki F' 7173612 YP_002436112.1 CDS DvMF_1698 NC_011769.1 2069192 2072083 R TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hemerythrin HHE cation binding domain protein; KEGG: dde:Dde_2814 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2069192..2072083) Desulfovibrio vulgaris str. 'Miyazaki F' 7173613 YP_002436113.1 CDS DvMF_1699 NC_011769.1 2072403 2073062 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(2072403..2073062) Desulfovibrio vulgaris str. 'Miyazaki F' 7173614 YP_002436114.1 CDS DvMF_1700 NC_011769.1 2073272 2075047 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_0505 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(2073272..2075047) Desulfovibrio vulgaris str. 'Miyazaki F' 7173615 YP_002436115.1 CDS DvMF_1701 NC_011769.1 2075361 2076746 D KEGG: dde:Dde_0506 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: radical SAM protein; protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 2075361..2076746 Desulfovibrio vulgaris str. 'Miyazaki F' 7173616 YP_002436116.1 CDS rpsA NC_011769.1 2077042 2078775 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2077042..2078775 Desulfovibrio vulgaris str. 'Miyazaki F' 7173617 YP_002436117.1 CDS DvMF_1703 NC_011769.1 2078759 2079652 D KEGG: dde:Dde_0508 signal peptide peptidase A; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type 2078759..2079652 Desulfovibrio vulgaris str. 'Miyazaki F' 7173618 YP_002436118.1 CDS DvMF_1704 NC_011769.1 2079760 2080707 D PFAM: GCN5-related N-acetyltransferase; KEGG: cak:Caul_3208 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2079760..2080707 Desulfovibrio vulgaris str. 'Miyazaki F' 7173619 YP_002436119.1 CDS DvMF_1705 NC_011769.1 2081060 2082598 D amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 2081060..2082598 Desulfovibrio vulgaris str. 'Miyazaki F' 7173620 YP_002436120.1 CDS DvMF_1706 NC_011769.1 2082972 2084795 D TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: dde:Dde_0502 glutamine--fructose-6-phosphate transaminase; glucosamine/fructose-6-phosphate aminotransferase 2082972..2084795 Desulfovibrio vulgaris str. 'Miyazaki F' 7173621 YP_002436121.1 CDS DvMF_1707 NC_011769.1 2085102 2086616 R PFAM: protein of unknown function UPF0118; KEGG: dde:Dde_2448 hypothetical protein; hypothetical protein complement(2085102..2086616) Desulfovibrio vulgaris str. 'Miyazaki F' 7173622 YP_002436122.1 CDS DvMF_1708 NC_011769.1 2086678 2087367 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: stp:Strop_3269 CRP/FNR family transcriptional regulator; Crp/Fnr family transcriptional regulator complement(2086678..2087367) Desulfovibrio vulgaris str. 'Miyazaki F' 7173623 YP_002436123.1 CDS DvMF_1709 NC_011769.1 2087473 2087829 R KEGG: dau:Daud_0789 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(2087473..2087829) Desulfovibrio vulgaris str. 'Miyazaki F' 7173624 YP_002436124.1 CDS DvMF_1710 NC_011769.1 2087857 2089641 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dau:Daud_0788 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(2087857..2089641) Desulfovibrio vulgaris str. 'Miyazaki F' 7173625 YP_002436125.1 CDS DvMF_1711 NC_011769.1 2089958 2091022 R PFAM: protein of unknown function DUF81; KEGG: sit:TM1040_3098 protein of unknown function DUF81; hypothetical protein complement(2089958..2091022) Desulfovibrio vulgaris str. 'Miyazaki F' 7173626 YP_002436126.1 CDS DvMF_1712 NC_011769.1 2091451 2091708 D KEGG: dde:Dde_3449 hypothetical protein; hypothetical protein 2091451..2091708 Desulfovibrio vulgaris str. 'Miyazaki F' 7173627 YP_002436127.1 CDS DvMF_1713 NC_011769.1 2092102 2094720 D KEGG: dde:Dde_3450 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I 2092102..2094720 Desulfovibrio vulgaris str. 'Miyazaki F' 7173628 YP_002436128.1 CDS DvMF_1714 NC_011769.1 2094975 2096189 D PFAM: protein of unknown function Met10; SMART: PUA domain containing protein; KEGG: dde:Dde_3451 SAM-dependent methyltransferase; hypothetical protein 2094975..2096189 Desulfovibrio vulgaris str. 'Miyazaki F' 7173629 YP_002436129.1 CDS DvMF_1715 NC_011769.1 2096207 2097376 D PFAM: aminotransferase class V; KEGG: dde:Dde_3452 aminotransferase, class V; class V aminotransferase 2096207..2097376 Desulfovibrio vulgaris str. 'Miyazaki F' 7173630 YP_002436130.1 CDS DvMF_1716 NC_011769.1 2097394 2097717 D PFAM: Domain of unknown function DUF1844; KEGG: dde:Dde_3453 hypothetical protein; hypothetical protein 2097394..2097717 Desulfovibrio vulgaris str. 'Miyazaki F' 7173631 YP_002436131.1 CDS argC NC_011769.1 2097794 2098846 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 2097794..2098846 Desulfovibrio vulgaris str. 'Miyazaki F' 7173632 YP_002436132.1 CDS DvMF_1718 NC_011769.1 2099117 2101108 D PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_3074 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2099117..2101108 Desulfovibrio vulgaris str. 'Miyazaki F' 7173633 YP_002436133.1 CDS DvMF_1719 NC_011769.1 2101478 2102686 R KEGG: dde:Dde_3456 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(2101478..2102686) Desulfovibrio vulgaris str. 'Miyazaki F' 7173634 YP_002436134.1 CDS DvMF_1720 NC_011769.1 2103157 2104395 D PFAM: EAL domain protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2343 diguanylate phosphodiesterase; diguanylate phosphodiesterase 2103157..2104395 Desulfovibrio vulgaris str. 'Miyazaki F' 7173635 YP_002436135.1 CDS DvMF_1721 NC_011769.1 2104713 2106008 R KEGG: dde:Dde_3457 phenylacetate-CoA ligase; phenylacetate--CoA ligase complement(2104713..2106008) Desulfovibrio vulgaris str. 'Miyazaki F' 7173636 YP_002436136.1 CDS DvMF_1722 NC_011769.1 2106509 2107786 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 2106509..2107786 Desulfovibrio vulgaris str. 'Miyazaki F' 7173637 YP_002436137.1 CDS DvMF_1723 NC_011769.1 2108056 2108556 D KEGG: dde:Dde_3459 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 2108056..2108556 Desulfovibrio vulgaris str. 'Miyazaki F' 7173638 YP_002436138.1 CDS DvMF_1725 NC_011769.1 2108877 2109284 D PFAM: protein of unknown function UPF0150; KEGG: bpa:BPP2077 hypothetical protein; hypothetical protein 2108877..2109284 Desulfovibrio vulgaris str. 'Miyazaki F' 7173640 YP_002436139.1 CDS DvMF_1726 NC_011769.1 2109654 2109977 R KEGG: dde:Dde_3460 hypothetical protein; hypothetical protein complement(2109654..2109977) Desulfovibrio vulgaris str. 'Miyazaki F' 7173641 YP_002436140.1 CDS DvMF_1727 NC_011769.1 2110150 2110947 R PFAM: conserved hypothetical protein; KEGG: dde:Dde_3461 hypothetical protein; hypothetical protein complement(2110150..2110947) Desulfovibrio vulgaris str. 'Miyazaki F' 7173642 YP_002436141.1 CDS DvMF_1728 NC_011769.1 2110944 2111777 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cte:CT1092 ABC transporter ATP-binding protein; ABC transporter complement(2110944..2111777) Desulfovibrio vulgaris str. 'Miyazaki F' 7173643 YP_002436142.1 CDS DvMF_1729 NC_011769.1 2112107 2114398 D TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: dde:Dde_3464 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 2112107..2114398 Desulfovibrio vulgaris str. 'Miyazaki F' 7173644 YP_002436143.1 CDS DvMF_1730 NC_011769.1 2114641 2116164 D KEGG: dde:Dde_3465 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 2114641..2116164 Desulfovibrio vulgaris str. 'Miyazaki F' 7173645 YP_002436144.1 CDS DvMF_1731 NC_011769.1 2116495 2116899 D PFAM: cytochrome C class III; KEGG: dde:Dde_3754 cytochrome C3; cytochrome C class III 2116495..2116899 Desulfovibrio vulgaris str. 'Miyazaki F' 7173646 YP_002436145.1 CDS DvMF_1732 NC_011769.1 2116896 2117864 D KEGG: dde:Dde_3755 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 2116896..2117864 Desulfovibrio vulgaris str. 'Miyazaki F' 7173647 YP_002436146.1 CDS DvMF_1733 NC_011769.1 2117876 2119525 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: dde:Dde_3756 periplasmic (NiFe) hydrogenase, large subunit, isozyme 2; nickel-dependent hydrogenase large subunit 2117876..2119525 Desulfovibrio vulgaris str. 'Miyazaki F' 7173648 YP_002436147.1 CDS DvMF_1734 NC_011769.1 2119670 2120653 R TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: dde:Dde_3466 ADP-glyceromanno-heptose 6-epimerase precursor; ADP-L-glycero-D-manno-heptose-6-epimerase complement(2119670..2120653) Desulfovibrio vulgaris str. 'Miyazaki F' 7173649 YP_002436148.1 CDS DvMF_1735 NC_011769.1 2120778 2121752 R PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3467 hypothetical protein; hypothetical protein complement(2120778..2121752) Desulfovibrio vulgaris str. 'Miyazaki F' 7173650 YP_002436149.1 CDS DvMF_1736 NC_011769.1 2122006 2123967 R PFAM: tyrosine protein kinase; serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: dde:Dde_3468 serine/threonine protein kinase; serine/threonine protein kinase complement(2122006..2123967) Desulfovibrio vulgaris str. 'Miyazaki F' 7173651 YP_002436150.1 CDS DvMF_1737 NC_011769.1 2124207 2124935 R PFAM: metallophosphoesterase; KEGG: dde:Dde_3469 serine/threonine protein phosphatase family protein; metallophosphoesterase complement(2124207..2124935) Desulfovibrio vulgaris str. 'Miyazaki F' 7173652 YP_002436151.1 CDS DvMF_1738 NC_011769.1 2125052 2125678 R KEGG: tcr:507957.200 mucin-associated surface protein (MASP), Pfam: Prosystemin PROSITE: ALA_RICH; hypothetical protein complement(2125052..2125678) Desulfovibrio vulgaris str. 'Miyazaki F' 7173653 YP_002436152.1 CDS DvMF_1739 NC_011769.1 2125994 2127142 R PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dde:Dde_3476 isocitrate dehydrogenase (NADP); isocitrate/isopropylmalate dehydrogenase complement(2125994..2127142) Desulfovibrio vulgaris str. 'Miyazaki F' 7173654 YP_002436153.1 CDS trpA NC_011769.1 2127525 2128337 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(2127525..2128337) Desulfovibrio vulgaris str. 'Miyazaki F' 7173655 YP_002436154.1 CDS DvMF_1741 NC_011769.1 2128334 2129518 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(2128334..2129518) Desulfovibrio vulgaris str. 'Miyazaki F' 7173656 YP_002436155.1 CDS DvMF_1742 NC_011769.1 2129558 2130235 R PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dde:Dde_3480 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase complement(2129558..2130235) Desulfovibrio vulgaris str. 'Miyazaki F' 7173657 YP_002436156.1 CDS DvMF_1743 NC_011769.1 2130232 2131197 R PFAM: indole-3-glycerol phosphate synthase; KEGG: amu:Amuc_1533 indole-3-glycerol-phosphate synthase; indole-3-glycerol-phosphate synthase complement(2130232..2131197) Desulfovibrio vulgaris str. 'Miyazaki F' 7173658 YP_002436157.1 CDS DvMF_1744 NC_011769.1 2131190 2132206 R KEGG: amu:Amuc_1532 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase complement(2131190..2132206) Desulfovibrio vulgaris str. 'Miyazaki F' 7173659 YP_002436158.1 CDS DvMF_1745 NC_011769.1 2132402 2132980 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: amu:Amuc_1532 anthranilate phosphoribosyltransferase; glutamine amidotransferase complement(2132402..2132980) Desulfovibrio vulgaris str. 'Miyazaki F' 7173660 YP_002436159.1 CDS DvMF_1746 NC_011769.1 2132961 2134523 R PFAM: anthranilate synthase component I domain protein; chorismate binding-like; KEGG: dde:Dde_3484 anthranilate synthase, component I; anthranilate synthase complement(2132961..2134523) Desulfovibrio vulgaris str. 'Miyazaki F' 7173661 YP_002436160.1 CDS DvMF_1747 NC_011769.1 2134644 2135435 R PFAM: prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; KEGG: dde:Dde_3485 prephenate dehydrogenase; prephenate dehydrogenase complement(2134644..2135435) Desulfovibrio vulgaris str. 'Miyazaki F' 7173662 YP_002436161.1 CDS DvMF_1748 NC_011769.1 2135432 2136784 R KEGG: dde:Dde_3486 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase complement(2135432..2136784) Desulfovibrio vulgaris str. 'Miyazaki F' 7173663 YP_002436162.1 CDS DvMF_1749 NC_011769.1 2137049 2138305 R PFAM: prephenate dehydratase; chorismate mutase; amino acid-binding ACT domain protein; KEGG: dde:Dde_3487 prephenate dehydratase; prephenate dehydratase complement(2137049..2138305) Desulfovibrio vulgaris str. 'Miyazaki F' 7173664 YP_002436163.1 CDS DvMF_1750 NC_011769.1 2138340 2139311 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate; 3-dehydroquinate synthase complement(2138340..2139311) Desulfovibrio vulgaris str. 'Miyazaki F' 7173665 YP_002436164.1 CDS DvMF_1751 NC_011769.1 2139616 2140413 R catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate; fructose-bisphosphate aldolase complement(2139616..2140413) Desulfovibrio vulgaris str. 'Miyazaki F' 7173666 YP_002436165.1 CDS DvMF_1752 NC_011769.1 2140717 2140821 R hypothetical protein complement(2140717..2140821) Desulfovibrio vulgaris str. 'Miyazaki F' 7173667 YP_002436166.1 CDS DvMF_1753 NC_011769.1 2141275 2141832 D KEGG: cre:CHLREDRAFT_149776 hypothetical protein Pfam: Extensin_2 PROSITE: IG_MHC ALA_RICH; hypothetical protein 2141275..2141832 Desulfovibrio vulgaris str. 'Miyazaki F' 7173668 YP_002436167.1 CDS DvMF_1754 NC_011769.1 2141973 2143268 D PFAM: EAL domain protein; KEGG: pth:PTH_0666 hypothetical signaling protein; diguanylate phosphodiesterase 2141973..2143268 Desulfovibrio vulgaris str. 'Miyazaki F' 7173669 YP_002436168.1 CDS DvMF_1755 NC_011769.1 2143703 2144965 R PFAM: phosphoesterase RecJ domain protein; KEGG: dde:Dde_3494 DHH family protein; phosphoesterase RecJ domain-containing protein complement(2143703..2144965) Desulfovibrio vulgaris str. 'Miyazaki F' 7173670 YP_002436169.1 CDS DvMF_1756 NC_011769.1 2145131 2145946 R KEGG: dde:Dde_3496 hypothetical protein; hypothetical protein complement(2145131..2145946) Desulfovibrio vulgaris str. 'Miyazaki F' 7173671 YP_002436170.1 CDS DvMF_1757 NC_011769.1 2146199 2146348 D KEGG: dde:Dde_3498 hypothetical protein; hypothetical protein 2146199..2146348 Desulfovibrio vulgaris str. 'Miyazaki F' 7173672 YP_002436171.1 CDS DvMF_1758 NC_011769.1 2146637 2150371 R PFAM: UvrD/REP helicase; KEGG: dde:Dde_3499 ATP-dependent DNA helicase UvrD; UvrD/REP helicase complement(2146637..2150371) Desulfovibrio vulgaris str. 'Miyazaki F' 7173673 YP_002436172.1 CDS DvMF_1759 NC_011769.1 2150588 2151784 D KEGG: dde:Dde_3501 hypothetical protein; hypothetical protein 2150588..2151784 Desulfovibrio vulgaris str. 'Miyazaki F' 7173674 YP_002436173.1 CDS DvMF_1760 NC_011769.1 2151914 2155576 D KEGG: zmo:ZMO0695 hypothetical protein; hypothetical protein 2151914..2155576 Desulfovibrio vulgaris str. 'Miyazaki F' 7173675 YP_002436174.1 CDS DvMF_1761 NC_011769.1 2155594 2157411 R PFAM: CBS domain containing protein; chloride channel core; KEGG: dde:Dde_3504 chloride channel family protein; chloride channel core complement(2155594..2157411) Desulfovibrio vulgaris str. 'Miyazaki F' 7173676 YP_002436175.1 CDS DvMF_1762 NC_011769.1 2157797 2158741 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; riboflavin kinase; KEGG: dde:Dde_3505 riboflavin kinase / FMN adenylyltransferase; riboflavin biosynthesis protein RibF complement(2157797..2158741) Desulfovibrio vulgaris str. 'Miyazaki F' 7173677 YP_002436176.1 CDS DvMF_1763 NC_011769.1 2159518 2160684 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: ade:Adeh_2651 two component, sigma54 specific, transcriptional regulator, fis family; Fis family transcriptional regulator complement(2159518..2160684) Desulfovibrio vulgaris str. 'Miyazaki F' 7173679 YP_002436177.1 CDS DvMF_1764 NC_011769.1 2160934 2161911 D PFAM: protein of unknown function DUF81; KEGG: afu:AF1561 hypothetical protein; hypothetical protein 2160934..2161911 Desulfovibrio vulgaris str. 'Miyazaki F' 7173680 YP_002436178.1 CDS DvMF_1765 NC_011769.1 2161936 2162355 D KEGG: afu:AF1562 hypothetical protein; hypothetical protein 2161936..2162355 Desulfovibrio vulgaris str. 'Miyazaki F' 7173681 YP_002436179.1 CDS DvMF_1766 NC_011769.1 2162420 2164123 D KEGG: dde:Dde_0318 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; hypothetical protein; SMART: AAA ATPase; Fis family transcriptional regulator 2162420..2164123 Desulfovibrio vulgaris str. 'Miyazaki F' 7173682 YP_002436180.1 CDS DvMF_1767 NC_011769.1 2164125 2164472 D KEGG: dde:Dde_0319 hypothetical protein; hypothetical protein 2164125..2164472 Desulfovibrio vulgaris str. 'Miyazaki F' 7173683 YP_002436181.1 CDS DvMF_1768 NC_011769.1 2164469 2166199 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2164469..2166199 Desulfovibrio vulgaris str. 'Miyazaki F' 7173684 YP_002436182.1 CDS DvMF_1769 NC_011769.1 2166202 2166591 D PFAM: response regulator receiver; KEGG: dde:Dde_0321 response regulator receiver domain-containing protein; response regulator receiver protein 2166202..2166591 Desulfovibrio vulgaris str. 'Miyazaki F' 7173685 YP_002436183.1 CDS DvMF_1770 NC_011769.1 2166664 2167398 D KEGG: sfu:Sfum_0655 hypothetical protein; hypothetical protein 2166664..2167398 Desulfovibrio vulgaris str. 'Miyazaki F' 7173686 YP_002436184.1 CDS DvMF_1771 NC_011769.1 2167524 2167814 D hypothetical protein 2167524..2167814 Desulfovibrio vulgaris str. 'Miyazaki F' 7173687 YP_002436185.1 CDS DvMF_1772 NC_011769.1 2167901 2168356 D PFAM: response regulator receiver; KEGG: sfu:Sfum_0654 response regulator receiver protein; response regulator receiver protein 2167901..2168356 Desulfovibrio vulgaris str. 'Miyazaki F' 7173688 YP_002436186.1 CDS DvMF_1773 NC_011769.1 2168456 2169682 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1360 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 2168456..2169682 Desulfovibrio vulgaris str. 'Miyazaki F' 7173689 YP_002436187.1 CDS DvMF_1774 NC_011769.1 2169795 2170553 R KEGG: psp:PSPPH_2344 lipoprotein; hypothetical protein complement(2169795..2170553) Desulfovibrio vulgaris str. 'Miyazaki F' 7173690 YP_002436188.1 CDS DvMF_1775 NC_011769.1 2171029 2173032 R TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_3207 acetyl-coenzyme A synthetase; acetate/CoA ligase complement(2171029..2173032) Desulfovibrio vulgaris str. 'Miyazaki F' 7173691 YP_002436189.1 CDS DvMF_1776 NC_011769.1 2173448 2176144 D PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: dde:Dde_3208 acetyltransferase; N-acetyltransferase GCN5 2173448..2176144 Desulfovibrio vulgaris str. 'Miyazaki F' 7173692 YP_002436190.1 CDS DvMF_1777 NC_011769.1 2176242 2177597 D KEGG: psp:PSPPH_4979 prophage PSPPH06, reverse transcriptase/maturase; prophage PSPPH06, reverse transcriptase/maturase 2176242..2177597 Desulfovibrio vulgaris str. 'Miyazaki F' 7173693 YP_002436191.1 CDS DvMF_1778 NC_011769.1 2177729 2178382 D hypothetical protein 2177729..2178382 Desulfovibrio vulgaris str. 'Miyazaki F' 7173694 YP_002436192.1 CDS DvMF_1779 NC_011769.1 2178449 2178697 D KEGG: pph:Ppha_2830 helix-turn-helix protein, CopG family; CopG family transcriptional regulator 2178449..2178697 Desulfovibrio vulgaris str. 'Miyazaki F' 7173695 YP_002436193.1 CDS DvMF_1780 NC_011769.1 2178903 2180585 R PFAM: aldehyde dehydrogenase_; KEGG: sfu:Sfum_1087 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2178903..2180585) Desulfovibrio vulgaris str. 'Miyazaki F' 7173696 YP_002436194.1 CDS DvMF_1781 NC_011769.1 2181199 2182047 R PFAM: glycosyl transferase family 8; KEGG: cre:CHLREDRAFT_186791 hypothetical protein Pfam: Cu-oxidase_3 DUF246 glyco_transf_8; glycosyl transferase family protein complement(2181199..2182047) Desulfovibrio vulgaris str. 'Miyazaki F' 7173697 YP_002436195.1 CDS DvMF_1782 NC_011769.1 2182252 2182956 R stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: dde:Dde_3212 CheD, stimulates methylation of MCP proteins; chemotaxis protein CheD complement(2182252..2182956) Desulfovibrio vulgaris str. 'Miyazaki F' 7173698 YP_002436196.1 CDS DvMF_1783 NC_011769.1 2183193 2183468 R PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_3213 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(2183193..2183468) Desulfovibrio vulgaris str. 'Miyazaki F' 7173699 YP_002436197.1 CDS DvMF_1784 NC_011769.1 2183779 2184876 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: lip:LI0082 unknown conserved protein; membrane-bound metal-dependent hydrolase complement(2183779..2184876) Desulfovibrio vulgaris str. 'Miyazaki F' 7173700 YP_002436198.1 CDS DvMF_1786 NC_011769.1 2185751 2186758 R PFAM: protein of unknown function DUF523; protein of unknown function DUF1722; KEGG: dde:Dde_3214 hypothetical protein; hypothetical protein complement(2185751..2186758) Desulfovibrio vulgaris str. 'Miyazaki F' 7173702 YP_002436199.1 CDS DvMF_1787 NC_011769.1 2186983 2187639 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_3215 HAD superfamily hydrolase; haloacid dehalogenase 2186983..2187639 Desulfovibrio vulgaris str. 'Miyazaki F' 7173703 YP_002436200.1 CDS DvMF_1788 NC_011769.1 2188081 2189025 D PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein; hypothetical protein 2188081..2189025 Desulfovibrio vulgaris str. 'Miyazaki F' 7173704 YP_002436201.1 CDS DvMF_1789 NC_011769.1 2189202 2189846 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 2189202..2189846 Desulfovibrio vulgaris str. 'Miyazaki F' 7173705 YP_002436202.1 CDS DvMF_1790 NC_011769.1 2189904 2190653 D TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dde:Dde_3217 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 2189904..2190653 Desulfovibrio vulgaris str. 'Miyazaki F' 7173706 YP_002436203.1 CDS DvMF_1791 NC_011769.1 2190882 2192426 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2190882..2192426 Desulfovibrio vulgaris str. 'Miyazaki F' 7173707 YP_002436204.1 CDS DvMF_1792 NC_011769.1 2192427 2193683 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 2192427..2193683 Desulfovibrio vulgaris str. 'Miyazaki F' 7173708 YP_002436205.1 CDS leuD NC_011769.1 2193737 2194228 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit 2193737..2194228 Desulfovibrio vulgaris str. 'Miyazaki F' 7173709 YP_002436206.1 CDS DvMF_1794 NC_011769.1 2194483 2195559 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2194483..2195559 Desulfovibrio vulgaris str. 'Miyazaki F' 7173710 YP_002436207.1 CDS DvMF_1795 NC_011769.1 2195611 2195760 D hypothetical protein 2195611..2195760 Desulfovibrio vulgaris str. 'Miyazaki F' 7173711 YP_002436208.1 CDS DvMF_1796 NC_011769.1 2195830 2196576 R KEGG: rci:RRC189 hypothetical protein; hypothetical protein complement(2195830..2196576) Desulfovibrio vulgaris str. 'Miyazaki F' 7173712 YP_002436209.1 CDS DvMF_1797 NC_011769.1 2196700 2198667 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dde:Dde_3228 molybdopterin binding domain-containing protein; molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein complement(2196700..2198667) Desulfovibrio vulgaris str. 'Miyazaki F' 7173713 YP_002436210.1 CDS DvMF_1798 NC_011769.1 2198737 2200041 R KEGG: dde:Dde_3227 Fis family transcriptional regulator; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; Fis family transcriptional regulator complement(2198737..2200041) Desulfovibrio vulgaris str. 'Miyazaki F' 7173714 YP_002436211.1 CDS DvMF_1799 NC_011769.1 2200230 2200961 D TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: dde:Dde_3226 phage shock protein A; phage shock protein A, PspA 2200230..2200961 Desulfovibrio vulgaris str. 'Miyazaki F' 7173715 YP_002436212.1 CDS DvMF_1800 NC_011769.1 2201281 2201604 D TIGRFAM: phage shock protein B; KEGG: dde:Dde_3225 hypothetical protein; phage shock protein B 2201281..2201604 Desulfovibrio vulgaris str. 'Miyazaki F' 7173716 YP_002436213.1 CDS DvMF_1801 NC_011769.1 2201607 2202188 D TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: dde:Dde_3224 phage shock protein C; phage shock protein C 2201607..2202188 Desulfovibrio vulgaris str. 'Miyazaki F' 7173717 YP_002436214.1 CDS DvMF_1802 NC_011769.1 2202908 2204005 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: cvi:CV_3339 hypothetical protein; hypothetical protein complement(2202908..2204005) Desulfovibrio vulgaris str. 'Miyazaki F' 7173718 YP_002436215.1 CDS DvMF_1803 NC_011769.1 2204170 2204874 D PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: dde:Dde_0306 hypothetical protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2204170..2204874 Desulfovibrio vulgaris str. 'Miyazaki F' 7173719 YP_002436216.1 CDS DvMF_1804 NC_011769.1 2204942 2205847 D PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: sat:SYN_00591 thioredoxin peroxidase; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2204942..2205847 Desulfovibrio vulgaris str. 'Miyazaki F' 7173720 YP_002436217.1 CDS DvMF_1805 NC_011769.1 2205877 2206491 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_0304 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2205877..2206491 Desulfovibrio vulgaris str. 'Miyazaki F' 7173721 YP_002436218.1 CDS DvMF_1806 NC_011769.1 2206890 2207291 D KEGG: dde:Dde_0303 MucR family transcriptional regulator; MucR family transcriptional regulator 2206890..2207291 Desulfovibrio vulgaris str. 'Miyazaki F' 7173722 YP_002436219.1 CDS DvMF_1807 NC_011769.1 2207775 2208737 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_0301 hypothetical protein; hypothetical protein 2207775..2208737 Desulfovibrio vulgaris str. 'Miyazaki F' 7173723 YP_002436220.1 CDS DvMF_1808 NC_011769.1 2208831 2210336 R PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0298 flagella basal body rod domain-containing protein; hypothetical protein complement(2208831..2210336) Desulfovibrio vulgaris str. 'Miyazaki F' 7173724 YP_002436221.1 CDS DvMF_1809 NC_011769.1 2210644 2211510 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(2210644..2211510) Desulfovibrio vulgaris str. 'Miyazaki F' 7173725 YP_002436222.1 CDS eno NC_011769.1 2211870 2213174 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(2211870..2213174) Desulfovibrio vulgaris str. 'Miyazaki F' 7173726 YP_002436223.1 CDS DvMF_1811 NC_011769.1 2213449 2214237 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(2213449..2214237) Desulfovibrio vulgaris str. 'Miyazaki F' 7173727 YP_002436224.1 CDS DvMF_1812 NC_011769.1 2214506 2214787 D KEGG: dde:Dde_0288 hypothetical protein; hypothetical protein 2214506..2214787 Desulfovibrio vulgaris str. 'Miyazaki F' 7173728 YP_002436225.1 CDS DvMF_1813 NC_011769.1 2215176 2215808 R KEGG: dde:Dde_0287 hypothetical protein; hypothetical protein complement(2215176..2215808) Desulfovibrio vulgaris str. 'Miyazaki F' 7173729 YP_002436226.1 CDS DvMF_1814 NC_011769.1 2215910 2216104 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0286 ferredoxin II; 4Fe-4S ferredoxin 2215910..2216104 Desulfovibrio vulgaris str. 'Miyazaki F' 7173730 YP_002436227.1 CDS DvMF_1815 NC_011769.1 2216508 2216786 D KEGG: dde:Dde_0283 hypothetical protein; hypothetical protein 2216508..2216786 Desulfovibrio vulgaris str. 'Miyazaki F' 7173731 YP_002436228.1 CDS DvMF_1816 NC_011769.1 2217002 2217328 D KEGG: dde:Dde_0282 hypothetical protein; hypothetical protein 2217002..2217328 Desulfovibrio vulgaris str. 'Miyazaki F' 7173732 YP_002436229.1 CDS DvMF_1817 NC_011769.1 2217736 2218200 D KEGG: dde:Dde_0281 chemotaxis protein CheX; chemotaxis protein CheX 2217736..2218200 Desulfovibrio vulgaris str. 'Miyazaki F' 7173733 YP_002436230.1 CDS DvMF_1818 NC_011769.1 2218752 2219468 D PFAM: radical SAM protein; KEGG: dde:Dde_0278 radical SAM domain-containing protein; radical SAM protein 2218752..2219468 Desulfovibrio vulgaris str. 'Miyazaki F' 7173734 YP_002436231.1 CDS DvMF_1819 NC_011769.1 2219503 2221413 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2219503..2221413 Desulfovibrio vulgaris str. 'Miyazaki F' 7173735 YP_002436232.1 CDS DvMF_1820 NC_011769.1 2221896 2223434 D hypothetical protein 2221896..2223434 Desulfovibrio vulgaris str. 'Miyazaki F' 7173736 YP_002436233.1 CDS DvMF_1821 NC_011769.1 2223522 2224004 D PFAM: Tir chaperone family protein; KEGG: lip:LI1032 hypothetical protein; Tir chaperone family protein 2223522..2224004 Desulfovibrio vulgaris str. 'Miyazaki F' 7173737 YP_002436234.1 CDS DvMF_1822 NC_011769.1 2224204 2225421 D PFAM: aminotransferase class I and II; KEGG: dde:Dde_0276 aminotransferase, classes I and II; class I and II aminotransferase 2224204..2225421 Desulfovibrio vulgaris str. 'Miyazaki F' 7173738 YP_002436235.1 CDS DvMF_1823 NC_011769.1 2225538 2226068 R KEGG: tbd:Tbd_1489 Appr-1-p processing protein; hypothetical protein complement(2225538..2226068) Desulfovibrio vulgaris str. 'Miyazaki F' 7173739 YP_002436236.1 CDS DvMF_1824 NC_011769.1 2226081 2227391 R SMART: metal-dependent phosphohydrolase HD region; KEGG: rci:RCIX977 metal-dependent phosphohydrolase (HD superfamily); metal dependent phosphohydrolase complement(2226081..2227391) Desulfovibrio vulgaris str. 'Miyazaki F' 7173740 YP_002436237.1 CDS DvMF_1825 NC_011769.1 2227464 2228483 R KEGG: dde:Dde_0271 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase complement(2227464..2228483) Desulfovibrio vulgaris str. 'Miyazaki F' 7173741 YP_002436238.1 CDS DvMF_1826 NC_011769.1 2228497 2229498 R KEGG: dde:Dde_0272 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase complement(2228497..2229498) Desulfovibrio vulgaris str. 'Miyazaki F' 7173742 YP_002436239.1 CDS DvMF_1827 NC_011769.1 2229502 2230422 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0273 oligopeptide/dipeptide ABC transporter permease; binding-protein-dependent transporters inner membrane component complement(2229502..2230422) Desulfovibrio vulgaris str. 'Miyazaki F' 7173743 YP_002436240.1 CDS DvMF_1828 NC_011769.1 2230424 2231401 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0274 oligopeptide/dipeptide ABC transporter permease; binding-protein-dependent transporters inner membrane component complement(2230424..2231401) Desulfovibrio vulgaris str. 'Miyazaki F' 7173744 YP_002436241.1 CDS DvMF_1829 NC_011769.1 2231969 2233531 R PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0275 oligopeptide/dipeptide ABC transporter periplasmic oligopeptide/dipeptide-binding protein; family 5 extracellular solute-binding protein complement(2231969..2233531) Desulfovibrio vulgaris str. 'Miyazaki F' 7173745 YP_002436242.1 CDS DvMF_1830 NC_011769.1 2233878 2234846 R KEGG: dde:Dde_1808 hypothetical protein; hypothetical protein complement(2233878..2234846) Desulfovibrio vulgaris str. 'Miyazaki F' 7173746 YP_002436243.1 CDS DvMF_1831 NC_011769.1 2235331 2235993 D PFAM: regulatory protein MarR; KEGG: tle:Tlet_2020 regulatory protein MarR; MarR family transcriptional regulator 2235331..2235993 Desulfovibrio vulgaris str. 'Miyazaki F' 7173747 YP_002436244.1 CDS DvMF_1832 NC_011769.1 2235990 2237174 D PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dre:492779 zgc:101549 Pfam: DUF326 NeuB Phage_GPL SAF PROSITE: AFP_LIKE; N-acylneuraminate-9-phosphate synthase 2235990..2237174 Desulfovibrio vulgaris str. 'Miyazaki F' 7173748 YP_002436245.1 CDS DvMF_1833 NC_011769.1 2237174 2238373 D KEGG: ecp:ECP_3032 hypothetical protein; hypothetical protein 2237174..2238373 Desulfovibrio vulgaris str. 'Miyazaki F' 7173749 YP_002436246.1 CDS DvMF_1834 NC_011769.1 2238370 2240433 D PFAM: acylneuraminate cytidylyltransferase; KEGG: vvu:VV1_0803 CMP-N-acetylneuraminic acid synthetase; acylneuraminate cytidylyltransferase 2238370..2240433 Desulfovibrio vulgaris str. 'Miyazaki F' 7173750 YP_002436247.1 CDS DvMF_1835 NC_011769.1 2240430 2241206 D KEGG: sgr:SGR_4544 methyltransferase; methyltransferase 2240430..2241206 Desulfovibrio vulgaris str. 'Miyazaki F' 7173751 YP_002436248.1 CDS DvMF_1836 NC_011769.1 2241306 2246327 D TIGRFAM: methyltransferase FkbM family; PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_1576 glycosyl transferase family 2; FkbM family methyltransferase 2241306..2246327 Desulfovibrio vulgaris str. 'Miyazaki F' 7173752 YP_002436249.1 CDS DvMF_1837 NC_011769.1 2246324 2247376 D PFAM: glycosyl transferase family 2; KEGG: ret:RHE_CH00761 beta-glycosyltransferase protein; family 2 glycosyl transferase 2246324..2247376 Desulfovibrio vulgaris str. 'Miyazaki F' 7173753 YP_002436250.1 CDS DvMF_1838 NC_011769.1 2247369 2248844 D PFAM: radical SAM protein; KEGG: sfu:Sfum_0802 radical SAM protein; radical SAM protein 2247369..2248844 Desulfovibrio vulgaris str. 'Miyazaki F' 7173754 YP_002436251.1 CDS DvMF_1839 NC_011769.1 2248902 2250038 D PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sus:acid_0616 methyltransferase type 12; methyltransferase type 11 2248902..2250038 Desulfovibrio vulgaris str. 'Miyazaki F' 7173755 YP_002436252.1 CDS DvMF_1840 NC_011769.1 2250368 2251525 D PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: dde:Dde_0439 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 2250368..2251525 Desulfovibrio vulgaris str. 'Miyazaki F' 7173756 YP_002436253.1 CDS DvMF_1841 NC_011769.1 2251527 2252204 D KEGG: dde:Dde_0438 UDP-N-acetylglucosamine pyrophosphorylase related protein; UDP-N-acetylglucosamine pyrophosphorylase related protein 2251527..2252204 Desulfovibrio vulgaris str. 'Miyazaki F' 7173757 YP_002436254.1 CDS DvMF_1842 NC_011769.1 2252273 2254927 D PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: dde:Dde_0431 glycosyl/glycerophosphate transferase involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC; family 2 glycosyl transferase 2252273..2254927 Desulfovibrio vulgaris str. 'Miyazaki F' 7173758 YP_002436255.1 CDS DvMF_1843 NC_011769.1 2255115 2255783 D KEGG: dde:Dde_3249 acetyltransferase; acetyltransferase 2255115..2255783 Desulfovibrio vulgaris str. 'Miyazaki F' 7173759 YP_002436256.1 CDS DvMF_1844 NC_011769.1 2255961 2256725 D PFAM: acylneuraminate cytidylyltransferase; KEGG: dde:Dde_3257 CMP-N-acetlyneuraminic acid synthetase; acylneuraminate cytidylyltransferase 2255961..2256725 Desulfovibrio vulgaris str. 'Miyazaki F' 7173760 YP_002436257.1 CDS DvMF_1845 NC_011769.1 2256710 2257744 D PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dde:Dde_3256 N-acetylneuraminate synthase; N-acylneuraminate-9-phosphate synthase 2256710..2257744 Desulfovibrio vulgaris str. 'Miyazaki F' 7173761 YP_002436258.1 CDS DvMF_1846 NC_011769.1 2257737 2258963 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dde:Dde_3255 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 2257737..2258963 Desulfovibrio vulgaris str. 'Miyazaki F' 7173762 YP_002436259.1 CDS DvMF_1847 NC_011769.1 2258956 2259897 R PFAM: polysaccharide deacetylase; KEGG: dde:Dde_3250 polysaccharide deacetylase family protein; polysaccharide deacetylase complement(2258956..2259897) Desulfovibrio vulgaris str. 'Miyazaki F' 7173763 YP_002436260.1 CDS DvMF_1848 NC_011769.1 2259906 2261060 R KEGG: dde:Dde_3251 hypothetical protein; hypothetical protein complement(2259906..2261060) Desulfovibrio vulgaris str. 'Miyazaki F' 7173764 YP_002436261.1 CDS DvMF_1849 NC_011769.1 2261057 2261989 R PFAM: radical SAM protein; KEGG: dde:Dde_3252 elongator protein 3/MiaB/NifB; radical SAM protein complement(2261057..2261989) Desulfovibrio vulgaris str. 'Miyazaki F' 7173765 YP_002436262.1 CDS DvMF_1850 NC_011769.1 2262005 2263510 R PFAM: capsule polysaccharide biosynthesis protein; KEGG: dde:Dde_3253 hypothetical protein; capsule polysaccharide biosynthesis protein complement(2262005..2263510) Desulfovibrio vulgaris str. 'Miyazaki F' 7173766 YP_002436263.1 CDS DvMF_1851 NC_011769.1 2263507 2264217 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_3254 hypothetical protein; methyltransferase type 11 complement(2263507..2264217) Desulfovibrio vulgaris str. 'Miyazaki F' 7173767 YP_002436264.1 CDS DvMF_1852 NC_011769.1 2264492 2266969 D PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: gbm:Gbem_3740 glycosyl transferase family 2; family 2 glycosyl transferase 2264492..2266969 Desulfovibrio vulgaris str. 'Miyazaki F' 7173768 YP_002436265.1 CDS DvMF_1853 NC_011769.1 2267161 2268318 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0428 glycosyltransferase-like protein; group 1 glycosyl transferase complement(2267161..2268318) Desulfovibrio vulgaris str. 'Miyazaki F' 7173769 YP_002436266.1 CDS DvMF_1854 NC_011769.1 2268427 2269359 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_0427 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase complement(2268427..2269359) Desulfovibrio vulgaris str. 'Miyazaki F' 7173770 YP_002436267.1 CDS DvMF_1855 NC_011769.1 2269362 2270138 R KEGG: dde:Dde_0428 glycosyltransferase-like protein; glycosyltransferase-like protein complement(2269362..2270138) Desulfovibrio vulgaris str. 'Miyazaki F' 7173771 YP_002436268.1 CDS DvMF_1856 NC_011769.1 2270195 2270572 R KEGG: dde:Dde_3230 hypothetical protein; hypothetical protein complement(2270195..2270572) Desulfovibrio vulgaris str. 'Miyazaki F' 7173772 YP_002436269.1 CDS DvMF_1857 NC_011769.1 2270876 2271508 R KEGG: dde:Dde_3232 hypothetical protein; hypothetical protein complement(2270876..2271508) Desulfovibrio vulgaris str. 'Miyazaki F' 7173773 YP_002436270.1 CDS DvMF_1858 NC_011769.1 2272085 2275660 D KEGG: dde:Dde_3233 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 2272085..2275660 Desulfovibrio vulgaris str. 'Miyazaki F' 7173774 YP_002436271.1 CDS DvMF_1859 NC_011769.1 2275666 2277165 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3234 two component Fis family transcriptional regulator; Fis family transcriptional regulator 2275666..2277165 Desulfovibrio vulgaris str. 'Miyazaki F' 7173775 YP_002436272.1 CDS DvMF_1860 NC_011769.1 2277836 2281483 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate:ferredoxin (flavodoxin) oxidoreductase; KEGG: dde:Dde_3237 pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2277836..2281483 Desulfovibrio vulgaris str. 'Miyazaki F' 7173776 YP_002436273.1 CDS DvMF_1861 NC_011769.1 2281606 2283315 D PFAM: L-lactate permease; KEGG: dde:Dde_3238 L-lactate transport; L-lactate permease 2281606..2283315 Desulfovibrio vulgaris str. 'Miyazaki F' 7173777 YP_002436274.1 CDS DvMF_1862 NC_011769.1 2283486 2284871 D PFAM: FAD linked oxidase; KEGG: dde:Dde_3239 glycolate oxidase subunit GlcD; FAD linked oxidase 2283486..2284871 Desulfovibrio vulgaris str. 'Miyazaki F' 7173778 YP_002436275.1 CDS DvMF_1863 NC_011769.1 2284876 2286168 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3240 iron-sulfur cluster-binding protein; hypothetical protein 2284876..2286168 Desulfovibrio vulgaris str. 'Miyazaki F' 7173779 YP_002436276.1 CDS DvMF_1864 NC_011769.1 2286534 2288648 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2286534..2288648 Desulfovibrio vulgaris str. 'Miyazaki F' 7173780 YP_002436277.1 CDS DvMF_1865 NC_011769.1 2288798 2290012 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2288798..2290012 Desulfovibrio vulgaris str. 'Miyazaki F' 7173781 YP_002436278.1 CDS DvMF_1866 NC_011769.1 2290169 2291230 D PFAM: DRTGG domain protein; KEGG: dde:Dde_3243 hypothetical protein; DRTGG domain-containing protein 2290169..2291230 Desulfovibrio vulgaris str. 'Miyazaki F' 7173782 YP_002436279.1 CDS DvMF_1867 NC_011769.1 2291367 2291996 D PFAM: protein of unknown function DUF162; KEGG: dde:Dde_3244 hypothetical protein; hypothetical protein 2291367..2291996 Desulfovibrio vulgaris str. 'Miyazaki F' 7173783 YP_002436280.1 CDS DvMF_1868 NC_011769.1 2292001 2294151 D PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3245 iron-sulfur cluster-binding protein; hypothetical protein 2292001..2294151 Desulfovibrio vulgaris str. 'Miyazaki F' 7173784 YP_002436281.1 CDS DvMF_1869 NC_011769.1 2294387 2296210 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 2294387..2296210 Desulfovibrio vulgaris str. 'Miyazaki F' 7173785 YP_002436282.1 CDS DvMF_1870 NC_011769.1 2296434 2297339 R PFAM: protein of unknown function DUF362; KEGG: dde:Dde_3247 hypothetical protein; hypothetical protein complement(2296434..2297339) Desulfovibrio vulgaris str. 'Miyazaki F' 7173786 YP_002436283.1 CDS DvMF_1871 NC_011769.1 2297570 2298598 R PFAM: rhodanese; KEGG: dde:Dde_3248 rhodanese-like protein; rhodanese complement(2297570..2298598) Desulfovibrio vulgaris str. 'Miyazaki F' 7173787 YP_002436284.1 CDS DvMF_1872 NC_011769.1 2299000 2300289 R PFAM: acetamidase/Formamidase; KEGG: gka:GK1391 acetamidase/formamidase; acetamidase/formamidase complement(2299000..2300289) Desulfovibrio vulgaris str. 'Miyazaki F' 7173789 YP_002436285.1 CDS DvMF_1873 NC_011769.1 2300700 2302052 D PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppd:Ppro_0838 radical SAM domain-containing protein; radical SAM protein 2300700..2302052 Desulfovibrio vulgaris str. 'Miyazaki F' 7173790 YP_002436286.1 CDS DvMF_1874 NC_011769.1 2302417 2304678 D KEGG: cte:CT0683 hypothetical protein; hypothetical protein 2302417..2304678 Desulfovibrio vulgaris str. 'Miyazaki F' 7173791 YP_002436287.1 CDS DvMF_1875 NC_011769.1 2304675 2306792 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: mrd:Mrad2831_2393 PAS/PAC sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase complement(2304675..2306792) Desulfovibrio vulgaris str. 'Miyazaki F' 7173792 YP_002436288.1 CDS DvMF_1877 NC_011769.1 2308371 2308775 D KEGG: mpt:Mpe_A0682 hypothetical protein; hypothetical protein 2308371..2308775 Desulfovibrio vulgaris str. 'Miyazaki F' 7173794 YP_002436289.1 CDS DvMF_1878 NC_011769.1 2308946 2309377 R PFAM: hemerythrin HHE cation binding domain protein; KEGG: gbm:Gbem_2562 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain protein complement(2308946..2309377) Desulfovibrio vulgaris str. 'Miyazaki F' 7173795 YP_002436290.1 CDS DvMF_1879 NC_011769.1 2310199 2312718 D PFAM: regulatory protein LuxR; KEGG: swo:Swol_1080 ATP-dependent transcriptional regulator-like protein; LuxR family ATP-dependent transcriptional regulator 2310199..2312718 Desulfovibrio vulgaris str. 'Miyazaki F' 7173796 YP_002436291.1 CDS DvMF_1880 NC_011769.1 2312841 2315651 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bav:BAV1572 autotransporter; outer membrane autotransporter barrel domain-containing protein 2312841..2315651 Desulfovibrio vulgaris str. 'Miyazaki F' 7173797 YP_002436292.1 CDS DvMF_1881 NC_011769.1 2315847 2317625 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2315847..2317625 Desulfovibrio vulgaris str. 'Miyazaki F' 7173798 YP_002436293.1 CDS DvMF_1882 NC_011769.1 2317893 2318258 R with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit complement(2317893..2318258) Desulfovibrio vulgaris str. 'Miyazaki F' 7173799 YP_002436294.1 CDS DvMF_1883 NC_011769.1 2318251 2320098 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: azo:azo1034 acetolactate synthase catalytic subunit; acetolactate synthase catalytic subunit complement(2318251..2320098) Desulfovibrio vulgaris str. 'Miyazaki F' 7173800 YP_002436295.1 CDS DvMF_1884 NC_011769.1 2321193 2321537 D PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein; type IV pilus assembly PilZ 2321193..2321537 Desulfovibrio vulgaris str. 'Miyazaki F' 7173802 YP_002436296.1 CDS DvMF_1885 NC_011769.1 2321814 2322383 R PFAM: conserved hypothetical protein; KEGG: pap:PSPA7_5649 hypothetical protein; hypothetical protein complement(2321814..2322383) Desulfovibrio vulgaris str. 'Miyazaki F' 7173803 YP_002436297.1 CDS DvMF_1886 NC_011769.1 2323072 2323395 R PFAM: HesB/YadR/YfhF-family protein; KEGG: dde:Dde_2018 HesB-like domain-containing protein; HesB/YadR/YfhF-family protein complement(2323072..2323395) Desulfovibrio vulgaris str. 'Miyazaki F' 7173804 YP_002436298.1 CDS DvMF_1887 NC_011769.1 2323584 2324645 D PFAM: glycosyl transferase family 2; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein; family 2 glycosyl transferase 2323584..2324645 Desulfovibrio vulgaris str. 'Miyazaki F' 7173805 YP_002436299.1 CDS DvMF_1888 NC_011769.1 2324731 2325333 R PFAM: methyladenine glycosylase; KEGG: dde:Dde_3701 DNA-3-methyladenine glycosylase I; DNA-3-methyladenine glycosylase I complement(2324731..2325333) Desulfovibrio vulgaris str. 'Miyazaki F' 7173806 YP_002436300.1 CDS DvMF_1889 NC_011769.1 2325342 2325821 R KEGG: dde:Dde_3700 hypothetical protein; hypothetical protein complement(2325342..2325821) Desulfovibrio vulgaris str. 'Miyazaki F' 7173807 YP_002436301.1 CDS DvMF_1890 NC_011769.1 2326240 2327316 D PFAM: iron-containing alcohol dehydrogenase; KEGG: lbl:LBL_1166 alcohol dehyodrogenase; iron-containing alcohol dehydrogenase 2326240..2327316 Desulfovibrio vulgaris str. 'Miyazaki F' 7173808 YP_002436302.1 CDS DvMF_1891 NC_011769.1 2327706 2328887 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: lic:LIC12168 aspartate aminotransferase; glutamine--scyllo-inositol transaminase 2327706..2328887 Desulfovibrio vulgaris str. 'Miyazaki F' 7173809 YP_002436303.1 CDS DvMF_1892 NC_011769.1 2328895 2330853 D KEGG: hch:HCH_05265 CMP-N-acetylneuraminic acid synthetase; CMP-N-acetylneuraminic acid synthetase 2328895..2330853 Desulfovibrio vulgaris str. 'Miyazaki F' 7173810 YP_002436304.1 CDS DvMF_1893 NC_011769.1 2330850 2331545 D PFAM: acylneuraminate cytidylyltransferase; KEGG: lbl:LBL_1169 cytidylyltransferase; acylneuraminate cytidylyltransferase 2330850..2331545 Desulfovibrio vulgaris str. 'Miyazaki F' 7173811 YP_002436305.1 CDS DvMF_1894 NC_011769.1 2331689 2332753 D PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: lbl:LBL_1168 N-acetylneuraminic acid (sialic acid) synthetase; N-acylneuraminate-9-phosphate synthase 2331689..2332753 Desulfovibrio vulgaris str. 'Miyazaki F' 7173812 YP_002436306.1 CDS DvMF_1895 NC_011769.1 2332910 2334592 D KEGG: mag:amb0137 hypothetical protein; hypothetical protein 2332910..2334592 Desulfovibrio vulgaris str. 'Miyazaki F' 7173813 YP_002436307.1 CDS DvMF_1896 NC_011769.1 2334737 2335408 D PFAM: transferase hexapeptide repeat containing protein; KEGG: amu:Amuc_0639 transferase hexapeptide repeat containing protein; transferase 2334737..2335408 Desulfovibrio vulgaris str. 'Miyazaki F' 7173814 YP_002436308.1 CDS DvMF_1897 NC_011769.1 2335594 2337129 D PFAM: polysaccharide biosynthesis protein; KEGG: dar:Daro_1251 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2335594..2337129 Desulfovibrio vulgaris str. 'Miyazaki F' 7173815 YP_002436309.1 CDS DvMF_1898 NC_011769.1 2337422 2338201 D PFAM: HpcH/HpaI aldolase; KEGG: dde:Dde_3685 HPCH/HPAI aldolase family protein; HpcH/HpaI aldolase 2337422..2338201 Desulfovibrio vulgaris str. 'Miyazaki F' 7173816 YP_002436310.1 CDS DvMF_1899 NC_011769.1 2338416 2339330 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_3686 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 2338416..2339330 Desulfovibrio vulgaris str. 'Miyazaki F' 7173817 YP_002436311.1 CDS DvMF_1900 NC_011769.1 2339805 2340575 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2339805..2340575 Desulfovibrio vulgaris str. 'Miyazaki F' 7173818 YP_002436312.1 CDS DvMF_1901 NC_011769.1 2340586 2341224 D PFAM: transferase hexapeptide repeat containing protein; KEGG: dde:Dde_3688 acetyltransferase; transferase 2340586..2341224 Desulfovibrio vulgaris str. 'Miyazaki F' 7173819 YP_002436313.1 CDS DvMF_1902 NC_011769.1 2341354 2342259 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dde:Dde_3689 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 2341354..2342259 Desulfovibrio vulgaris str. 'Miyazaki F' 7173820 YP_002436314.1 CDS DvMF_1903 NC_011769.1 2342404 2343045 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dde:Dde_3690 HAD superfamily hydrolase; haloacid dehalogenase 2342404..2343045 Desulfovibrio vulgaris str. 'Miyazaki F' 7173821 YP_002436315.1 CDS DvMF_1904 NC_011769.1 2343324 2345327 D KEGG: lbl:LBL_1208 hypothetical protein; hypothetical protein 2343324..2345327 Desulfovibrio vulgaris str. 'Miyazaki F' 7173822 YP_002436316.1 CDS DvMF_1905 NC_011769.1 2345540 2347201 R PFAM: sulfatase; KEGG: pen:PSEEN4076 hypothetical protein; hypothetical protein complement(2345540..2347201) Desulfovibrio vulgaris str. 'Miyazaki F' 7173823 YP_002436317.1 CDS DvMF_1906 NC_011769.1 2347424 2348740 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dde:Dde_3693 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis-like; DegT/DnrJ/EryC1/StrS aminotransferase 2347424..2348740 Desulfovibrio vulgaris str. 'Miyazaki F' 7173824 YP_002436318.1 CDS DvMF_1907 NC_011769.1 2348832 2351996 D KEGG: dde:Dde_2558 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2348832..2351996 Desulfovibrio vulgaris str. 'Miyazaki F' 7173825 YP_002436319.1 CDS DvMF_1908 NC_011769.1 2352430 2353212 D TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: nucleotidyl transferase; KEGG: dde:Dde_3694 glucose-1-phosphate cytidylyl-transferase; glucose-1-phosphate cytidylyltransferase 2352430..2353212 Desulfovibrio vulgaris str. 'Miyazaki F' 7173826 YP_002436320.1 CDS DvMF_1909 NC_011769.1 2353476 2354585 D TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: dde:Dde_3695 CDP-glucose-4,6-dehydratase; CDP-glucose 4,6-dehydratase 2353476..2354585 Desulfovibrio vulgaris str. 'Miyazaki F' 7173827 YP_002436321.1 CDS DvMF_1910 NC_011769.1 2354611 2355060 D KEGG: dde:Dde_3696 polysaccharide biosynthesis domain-containing protein; polysaccharide biosynthesis domain-containing protein 2354611..2355060 Desulfovibrio vulgaris str. 'Miyazaki F' 7173828 YP_002436322.1 CDS DvMF_1911 NC_011769.1 2355235 2356368 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dde:Dde_3697 aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 2355235..2356368 Desulfovibrio vulgaris str. 'Miyazaki F' 7173829 YP_002436323.1 CDS DvMF_1912 NC_011769.1 2356526 2357554 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3698 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2356526..2357554 Desulfovibrio vulgaris str. 'Miyazaki F' 7173830 YP_002436324.1 CDS DvMF_1913 NC_011769.1 2358890 2359222 D KEGG: dde:Dde_1495 hypothetical protein; hypothetical protein 2358890..2359222 Desulfovibrio vulgaris str. 'Miyazaki F' 7173831 YP_002436325.1 CDS DvMF_1914 NC_011769.1 2359458 2360645 D PFAM: protein of unknown function DUF939; KEGG: dde:Dde_0097 hypothetical protein; hypothetical protein 2359458..2360645 Desulfovibrio vulgaris str. 'Miyazaki F' 7173832 YP_002436326.1 CDS DvMF_1915 NC_011769.1 2360689 2360985 D KEGG: pnu:Pnuc_1322 hypothetical protein; hypothetical protein 2360689..2360985 Desulfovibrio vulgaris str. 'Miyazaki F' 7173833 YP_002436327.1 CDS DvMF_1916 NC_011769.1 2361327 2362139 D PFAM: zinc/iron permease; KEGG: cbf:CLI_1259 zinc transporter ZIP family; zinc/iron permease 2361327..2362139 Desulfovibrio vulgaris str. 'Miyazaki F' 7173834 YP_002436328.1 CDS DvMF_1917 NC_011769.1 2362328 2364280 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; ATPase P; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: amu:Amuc_1839 ATPase P; ATPase P 2362328..2364280 Desulfovibrio vulgaris str. 'Miyazaki F' 7173835 YP_002436329.1 CDS DvMF_1918 NC_011769.1 2364579 2365325 D PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_0168 extracellular solute-binding protein; family 3 extracellular solute-binding protein 2364579..2365325 Desulfovibrio vulgaris str. 'Miyazaki F' 7173836 YP_002436330.1 CDS DvMF_1919 NC_011769.1 2365465 2366136 D TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0167 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 2365465..2366136 Desulfovibrio vulgaris str. 'Miyazaki F' 7173837 YP_002436331.1 CDS DvMF_1920 NC_011769.1 2366149 2366898 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0166 ATPase; ABC transporter 2366149..2366898 Desulfovibrio vulgaris str. 'Miyazaki F' 7173838 YP_002436332.1 CDS DvMF_1921 NC_011769.1 2367110 2368414 D TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; helix-hairpin-helix motif; HhH-GPD family protein; KEGG: dde:Dde_0212 A/G-specific DNA-adenine glycosylase; A/G-specific adenine glycosylase 2367110..2368414 Desulfovibrio vulgaris str. 'Miyazaki F' 7173839 YP_002436333.1 CDS DvMF_1922 NC_011769.1 2368549 2371248 R KEGG: rxy:Rxyl_1043 hypothetical protein; hypothetical protein complement(2368549..2371248) Desulfovibrio vulgaris str. 'Miyazaki F' 7173840 YP_002436334.1 CDS DvMF_1923 NC_011769.1 2371248 2372399 R PFAM: glycosyl transferase family 2; KEGG: reu:Reut_A2635 glycosyl transferase, family 2; family 2 glycosyl transferase complement(2371248..2372399) Desulfovibrio vulgaris str. 'Miyazaki F' 7173841 YP_002436335.1 CDS DvMF_1924 NC_011769.1 2372553 2373755 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0213 ATPase; ABC transporter complement(2372553..2373755) Desulfovibrio vulgaris str. 'Miyazaki F' 7173842 YP_002436336.1 CDS DvMF_1925 NC_011769.1 2373740 2375062 R PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_0214 hypothetical protein; aminoglycoside phosphotransferase complement(2373740..2375062) Desulfovibrio vulgaris str. 'Miyazaki F' 7173843 YP_002436337.1 CDS DvMF_1926 NC_011769.1 2375497 2375838 D PFAM: zinc finger DksA/TraR C4-type; KEGG: wsu:WS2102 hypothetical protein; TraR/DksA family transcriptional regulator 2375497..2375838 Desulfovibrio vulgaris str. 'Miyazaki F' 7173844 YP_002436338.1 CDS DvMF_1927 NC_011769.1 2375912 2377843 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0215 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2375912..2377843 Desulfovibrio vulgaris str. 'Miyazaki F' 7173845 YP_002436339.1 CDS DvMF_1928 NC_011769.1 2378075 2379457 D PFAM: FAD dependent oxidoreductase; KEGG: dde:Dde_0216 UDP-galactopyranose mutase; FAD dependent oxidoreductase 2378075..2379457 Desulfovibrio vulgaris str. 'Miyazaki F' 7173846 YP_002436340.1 CDS DvMF_1929 NC_011769.1 2379495 2380565 D PFAM: creatinase; peptidase M24; KEGG: dde:Dde_0217 M24 family peptidase; peptidase M24 2379495..2380565 Desulfovibrio vulgaris str. 'Miyazaki F' 7173847 YP_002436341.1 CDS DvMF_1930 NC_011769.1 2380686 2381120 R PFAM: protein of unknown function DUF336; KEGG: dsy:DSY4743 hypothetical protein; hypothetical protein complement(2380686..2381120) Desulfovibrio vulgaris str. 'Miyazaki F' 7173848 YP_002436342.1 CDS DvMF_1931 NC_011769.1 2381132 2383054 R TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: drm:Dred_2756 TRAP dicarboxylate transporter DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(2381132..2383054) Desulfovibrio vulgaris str. 'Miyazaki F' 7173849 YP_002436343.1 CDS DvMF_1932 NC_011769.1 2383139 2384146 R TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: drm:Dred_2757 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(2383139..2384146) Desulfovibrio vulgaris str. 'Miyazaki F' 7173850 YP_002436344.1 CDS DvMF_1933 NC_011769.1 2384612 2386036 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; ATPase AAA; KEGG: cbe:Cbei_3352 sigma54 specific transcriptional regulator, fis family; Fis family transcriptional regulator 2384612..2386036 Desulfovibrio vulgaris str. 'Miyazaki F' 7173851 YP_002436345.1 CDS DvMF_1934 NC_011769.1 2386190 2387932 R catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase complement(2386190..2387932) Desulfovibrio vulgaris str. 'Miyazaki F' 7173852 YP_002436346.1 CDS DvMF_1935 NC_011769.1 2388346 2388756 D KEGG: dde:Dde_0181 hypothetical protein; hypothetical protein 2388346..2388756 Desulfovibrio vulgaris str. 'Miyazaki F' 7173853 YP_002436347.1 CDS DvMF_1936 NC_011769.1 2388937 2390421 R PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: dde:Dde_0179 deoxyribodipyrimidine photo-lyase type II; deoxyribodipyrimidine photo-lyase complement(2388937..2390421) Desulfovibrio vulgaris str. 'Miyazaki F' 7173854 YP_002436348.1 CDS DvMF_1937 NC_011769.1 2390558 2391367 R PFAM: response regulator receiver; KEGG: dde:Dde_0178 response regulator receiver domain-containing protein; response regulator receiver protein complement(2390558..2391367) Desulfovibrio vulgaris str. 'Miyazaki F' 7173855 YP_002436349.1 CDS DvMF_1938 NC_011769.1 2391861 2392826 R KEGG: dde:Dde_0177 DNA polymerase III delta prime subunit; DNA polymerase III subunit delta' complement(2391861..2392826) Desulfovibrio vulgaris str. 'Miyazaki F' 7173856 YP_002436350.1 CDS DvMF_1939 NC_011769.1 2393162 2394448 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(2393162..2394448) Desulfovibrio vulgaris str. 'Miyazaki F' 7173857 YP_002436351.1 CDS DvMF_1940 NC_011769.1 2394830 2396575 D PFAM: lytic transglycosylase catalytic; KEGG: dde:Dde_0175 transglycosylase SLT domain-containing protein; lytic transglycosylase 2394830..2396575 Desulfovibrio vulgaris str. 'Miyazaki F' 7173858 YP_002436352.1 CDS DvMF_1941 NC_011769.1 2396495 2396872 R KEGG: lip:LI0201 hypothetical protein; hypothetical protein complement(2396495..2396872) Desulfovibrio vulgaris str. 'Miyazaki F' 7173859 YP_002436353.1 CDS DvMF_1942 NC_011769.1 2397291 2398583 D PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: dde:Dde_0174 phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase 2397291..2398583 Desulfovibrio vulgaris str. 'Miyazaki F' 7173860 YP_002436354.1 CDS DvMF_1943 NC_011769.1 2398885 2401092 D PFAM: ribonuclease II; KEGG: dde:Dde_0173 RNB-like family protein; ribonuclease II 2398885..2401092 Desulfovibrio vulgaris str. 'Miyazaki F' 7173861 YP_002436355.1 CDS DvMF_1944 NC_011769.1 2401222 2401950 D PFAM: protein of unknown function DUF205; KEGG: dde:Dde_0172 acyl-phosphate glycerol-3-phosphate acyltransferase; hypothetical protein 2401222..2401950 Desulfovibrio vulgaris str. 'Miyazaki F' 7173862 YP_002436356.1 CDS DvMF_1945 NC_011769.1 2402038 2403516 D KEGG: dde:Dde_0171 L-threonine synthase; TIGRFAM: threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase 2402038..2403516 Desulfovibrio vulgaris str. 'Miyazaki F' 7173863 YP_002436357.1 CDS DvMF_1946 NC_011769.1 2403764 2404363 D PFAM: MGS domain protein; KEGG: dde:Dde_0377 phosphoribosylaminoimidazolecarboxamide formyltransferase; phosphoribosylaminoimidazolecarboxamide formyltransferase 2403764..2404363 Desulfovibrio vulgaris str. 'Miyazaki F' 7173864 YP_002436358.1 CDS DvMF_1947 NC_011769.1 2404558 2406525 D TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: dde:Dde_0376 GTP-binding protein HflX; GTP-binding proten HflX 2404558..2406525 Desulfovibrio vulgaris str. 'Miyazaki F' 7173865 YP_002436359.1 CDS DvMF_1948 NC_011769.1 2407936 2409648 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: dde:Dde_0374 rhodanese-like protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2407936..2409648 Desulfovibrio vulgaris str. 'Miyazaki F' 7173866 YP_002436360.1 CDS DvMF_1949 NC_011769.1 2409929 2410828 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: amr:AM1_C0051 DUF6 domain transmembrane protein; hypothetical protein complement(2409929..2410828) Desulfovibrio vulgaris str. 'Miyazaki F' 7173867 YP_002436361.1 CDS DvMF_1950 NC_011769.1 2411162 2412178 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pde:Pden_4239 methylated-DNA--protein-cysteine methyltransferase; AraC family transcriptional regulator complement(2411162..2412178) Desulfovibrio vulgaris str. 'Miyazaki F' 7173868 YP_002436362.1 CDS DvMF_1951 NC_011769.1 2412549 2412788 D hypothetical protein 2412549..2412788 Desulfovibrio vulgaris str. 'Miyazaki F' 7173869 YP_002436363.1 CDS DvMF_1952 NC_011769.1 2412960 2414591 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2412960..2414591 Desulfovibrio vulgaris str. 'Miyazaki F' 7173870 YP_002436364.1 CDS DvMF_1953 NC_011769.1 2414670 2415680 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dde:Dde_2459 ThiF protein; UBA/THIF-type NAD/FAD binding protein complement(2414670..2415680) Desulfovibrio vulgaris str. 'Miyazaki F' 7173871 YP_002436365.1 CDS DvMF_1954 NC_011769.1 2415776 2416114 R KEGG: pth:PTH_1468 hypothetical protein; hypothetical protein complement(2415776..2416114) Desulfovibrio vulgaris str. 'Miyazaki F' 7173872 YP_002436366.1 CDS DvMF_1955 NC_011769.1 2416133 2416360 R PFAM: thiamineS protein; KEGG: dde:Dde_2458 hypothetical protein; sulfur carrier protein ThiS complement(2416133..2416360) Desulfovibrio vulgaris str. 'Miyazaki F' 7173873 YP_002436367.1 CDS DvMF_1956 NC_011769.1 2416439 2418166 R PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; KEGG: pth:PTH_2604 aldehyde:ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase complement(2416439..2418166) Desulfovibrio vulgaris str. 'Miyazaki F' 7173874 YP_002436368.1 CDS DvMF_1957 NC_011769.1 2418778 2419854 R PFAM: extracellular solute-binding protein family 1; KEGG: dde:Dde_3673 polyamine ABC transporter periplasmic polyamine-binding protein; extracellular solute-binding protein complement(2418778..2419854) Desulfovibrio vulgaris str. 'Miyazaki F' 7173875 YP_002436369.1 CDS potC NC_011769.1 2419854 2420654 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein complement(2419854..2420654) Desulfovibrio vulgaris str. 'Miyazaki F' 7173876 YP_002436370.1 CDS DvMF_1959 NC_011769.1 2420656 2421624 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lip:LI0830 ABC-type spermidine/putrescine transport system, permease I; spermidine/putrescine ABC transporter permease complement(2420656..2421624) Desulfovibrio vulgaris str. 'Miyazaki F' 7173877 YP_002436371.1 CDS potA NC_011769.1 2421611 2422810 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase complement(2421611..2422810) Desulfovibrio vulgaris str. 'Miyazaki F' 7173878 YP_002436372.1 CDS DvMF_1961 NC_011769.1 2423918 2424913 R PFAM: polysaccharide deacetylase; KEGG: gme:Gmet_2850 polysaccharide deacetylase; polysaccharide deacetylase complement(2423918..2424913) Desulfovibrio vulgaris str. 'Miyazaki F' 7173879 YP_002436373.1 CDS DvMF_1962 NC_011769.1 2424917 2425864 R TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate/quinate 5-dehydrogenase; shikimate dehydrogenase substrate binding domain protein; KEGG: dde:Dde_3564 shikimate dehydrogenase; shikimate 5-dehydrogenase complement(2424917..2425864) Desulfovibrio vulgaris str. 'Miyazaki F' 7173880 YP_002436374.1 CDS hisG NC_011769.1 2426158 2427039 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(2426158..2427039) Desulfovibrio vulgaris str. 'Miyazaki F' 7173881 YP_002436375.1 CDS hisI NC_011769.1 2427039 2427440 R PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(2427039..2427440) Desulfovibrio vulgaris str. 'Miyazaki F' 7173882 YP_002436376.1 CDS DvMF_1965 NC_011769.1 2427647 2428804 R PFAM: class II aldolase/adducin family protein; protein of unknown function UPF0066; KEGG: dde:Dde_3569 hypothetical protein; class II aldolase/adducin family protein complement(2427647..2428804) Desulfovibrio vulgaris str. 'Miyazaki F' 7173883 YP_002436377.1 CDS DvMF_1966 NC_011769.1 2429043 2430140 R KEGG: dde:Dde_3570 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(2429043..2430140) Desulfovibrio vulgaris str. 'Miyazaki F' 7173884 YP_002436378.1 CDS DvMF_1967 NC_011769.1 2430284 2432653 R PFAM: UvrD/REP helicase; KEGG: dde:Dde_3571 ATP-dependent DNA helicase UvrD; UvrD/REP helicase complement(2430284..2432653) Desulfovibrio vulgaris str. 'Miyazaki F' 7173885 YP_002436379.1 CDS DvMF_1968 NC_011769.1 2432710 2434473 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein; type I phosphodiesterase/nucleotide pyrophosphatase complement(2432710..2434473) Desulfovibrio vulgaris str. 'Miyazaki F' 7173886 YP_002436380.1 CDS DvMF_1969 NC_011769.1 2434693 2434896 R TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: gsu:GSU1550 4-oxalocrotonate tautomerase family protein; 4-oxalocrotonate tautomerase complement(2434693..2434896) Desulfovibrio vulgaris str. 'Miyazaki F' 7173887 YP_002436381.1 CDS DvMF_1970 NC_011769.1 2435371 2435865 D KEGG: dde:Dde_3573 hypothetical protein; hypothetical protein 2435371..2435865 Desulfovibrio vulgaris str. 'Miyazaki F' 7173888 YP_002436382.1 CDS DvMF_1971 NC_011769.1 2436553 2438775 D KEGG: psa:PST_3745 CRISPR-associated helicase Cas3 domain protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases; CRISPR-associated helicase Cas3 2436553..2438775 Desulfovibrio vulgaris str. 'Miyazaki F' 7173890 YP_002436383.1 CDS DvMF_1972 NC_011769.1 2438875 2439540 D TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: psa:PST_3746 CRISPR-associated protein, CT1134 family; CRISPR-associated protein Cas5 family 2438875..2439540 Desulfovibrio vulgaris str. 'Miyazaki F' 7173891 YP_002436384.1 CDS DvMF_1973 NC_011769.1 2439537 2441426 D TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133; KEGG: xom:XOO_0796 hypothetical protein; CRISPR-associated protein, Csd1 family 2439537..2441426 Desulfovibrio vulgaris str. 'Miyazaki F' 7173892 YP_002436385.1 CDS DvMF_1974 NC_011769.1 2441451 2442404 D TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: gme:Gmet_1067 CRISPR-associated TM1801 family protein; CRISPR-associated protein, Csd2 family 2441451..2442404 Desulfovibrio vulgaris str. 'Miyazaki F' 7173893 YP_002436386.1 CDS DvMF_1975 NC_011769.1 2442415 2443182 D TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: cph:Cpha266_1432 CRISPR-associated protein Cas4; CRISPR-associated protein Cas4 2442415..2443182 Desulfovibrio vulgaris str. 'Miyazaki F' 7173894 YP_002436387.1 CDS DvMF_1976 NC_011769.1 2443182 2444213 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: sat:SYN_02473 hypothetical cytosolic protein; CRISPR-associated protein Cas1 2443182..2444213 Desulfovibrio vulgaris str. 'Miyazaki F' 7173895 YP_002436388.1 CDS DvMF_1977 NC_011769.1 2444216 2444506 D TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: gdi:GDI0058 hypothetical protein; CRISPR-associated protein Cas2 2444216..2444506 Desulfovibrio vulgaris str. 'Miyazaki F' 7173896 YP_002436389.1 CDS DvMF_1978 NC_011769.1 2448257 2448454 D hypothetical protein 2448257..2448454 Desulfovibrio vulgaris str. 'Miyazaki F' 7173897 YP_002436390.1 CDS DvMF_1979 NC_011769.1 2448558 2449097 D KEGG: sus:acid_7821 helix-hairpin-helix repeat-containing competence protein ComEA; hypothetical protein 2448558..2449097 Desulfovibrio vulgaris str. 'Miyazaki F' 7173898 YP_002436391.1 CDS DvMF_1980 NC_011769.1 2449371 2449688 D KEGG: sus:acid_6343 hypothetical protein; hypothetical protein 2449371..2449688 Desulfovibrio vulgaris str. 'Miyazaki F' 7173899 YP_002436392.1 CDS DvMF_1981 NC_011769.1 2450199 2450798 R PFAM: rubrerythrin; ferritin; KEGG: dde:Dde_0133 bacterioferritin; ferritin complement(2450199..2450798) Desulfovibrio vulgaris str. 'Miyazaki F' 7173900 YP_002436393.1 CDS DvMF_1982 NC_011769.1 2451196 2454372 D KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 2451196..2454372 Desulfovibrio vulgaris str. 'Miyazaki F' 7173901 YP_002436394.1 CDS DvMF_1983 NC_011769.1 2454443 2455216 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hmo:HM1_1613 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(2454443..2455216) Desulfovibrio vulgaris str. 'Miyazaki F' 7173902 YP_002436395.1 CDS DvMF_1984 NC_011769.1 2455824 2457071 D PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0644 protein of unknown function DUF81; hypothetical protein 2455824..2457071 Desulfovibrio vulgaris str. 'Miyazaki F' 7173903 YP_002436396.1 CDS DvMF_1985 NC_011769.1 2457073 2457792 D KEGG: sfu:Sfum_0645 hypothetical protein; hypothetical protein 2457073..2457792 Desulfovibrio vulgaris str. 'Miyazaki F' 7173904 YP_002436397.1 CDS DvMF_1986 NC_011769.1 2458170 2458886 D PFAM: manganese and iron superoxide dismutase; KEGG: nmu:Nmul_A0501 superoxide dismutase; superoxide dismutase 2458170..2458886 Desulfovibrio vulgaris str. 'Miyazaki F' 7173905 YP_002436398.1 CDS DvMF_1987 NC_011769.1 2459260 2462016 R PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase; pyruvate, water dikinase complement(2459260..2462016) Desulfovibrio vulgaris str. 'Miyazaki F' 7173906 YP_002436399.1 CDS DvMF_1988 NC_011769.1 2462150 2462509 R PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein; response regulator receiver protein complement(2462150..2462509) Desulfovibrio vulgaris str. 'Miyazaki F' 7173907 YP_002436400.1 CDS DvMF_1989 NC_011769.1 2462844 2464544 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0617 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2462844..2464544) Desulfovibrio vulgaris str. 'Miyazaki F' 7173908 YP_002436401.1 CDS DvMF_1990 NC_011769.1 2464945 2467740 R PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0649 pyruvate, water dikinase; pyruvate, water dikinase complement(2464945..2467740) Desulfovibrio vulgaris str. 'Miyazaki F' 7173909 YP_002436402.1 CDS DvMF_1991 NC_011769.1 2467776 2468237 R PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein; response regulator receiver protein complement(2467776..2468237) Desulfovibrio vulgaris str. 'Miyazaki F' 7173910 YP_002436403.1 CDS DvMF_1992 NC_011769.1 2468570 2469688 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0642 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2468570..2469688 Desulfovibrio vulgaris str. 'Miyazaki F' 7173911 YP_002436404.1 CDS DvMF_1993 NC_011769.1 2469673 2471133 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sfu:Sfum_0643 two component, sigma54 specific, transcriptional regulator, fis family; Fis family transcriptional regulator 2469673..2471133 Desulfovibrio vulgaris str. 'Miyazaki F' 7173912 YP_002436405.1 CDS DvMF_1994 NC_011769.1 2471444 2472175 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: csa:Csal_1764 transcriptional regulator, GntR family; GntR family transcriptional regulator 2471444..2472175 Desulfovibrio vulgaris str. 'Miyazaki F' 7173913 YP_002436406.1 CDS DvMF_1995 NC_011769.1 2472315 2473385 R PFAM: malate/L-lactate dehydrogenase; KEGG: mrd:Mrad2831_5976 malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase complement(2472315..2473385) Desulfovibrio vulgaris str. 'Miyazaki F' 7173914 YP_002436407.1 CDS DvMF_1996 NC_011769.1 2473689 2475722 R PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2473689..2475722) Desulfovibrio vulgaris str. 'Miyazaki F' 7173915 YP_002436408.1 CDS DvMF_1997 NC_011769.1 2476073 2477323 R KEGG: mta:Moth_1926 hypothetical protein; hypothetical protein complement(2476073..2477323) Desulfovibrio vulgaris str. 'Miyazaki F' 7173916 YP_002436409.1 CDS DvMF_1998 NC_011769.1 2477442 2477903 R KEGG: dsy:DSY3247 hypothetical protein; hypothetical protein complement(2477442..2477903) Desulfovibrio vulgaris str. 'Miyazaki F' 7173917 YP_002436410.1 CDS DvMF_1999 NC_011769.1 2477896 2479440 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: dsy:DSY3248 hypothetical protein; hypothetical protein complement(2477896..2479440) Desulfovibrio vulgaris str. 'Miyazaki F' 7173918 YP_002436411.1 CDS DvMF_2000 NC_011769.1 2479906 2480367 R KEGG: dsy:DSY3247 hypothetical protein; hypothetical protein complement(2479906..2480367) Desulfovibrio vulgaris str. 'Miyazaki F' 7173919 YP_002436412.1 CDS DvMF_2001 NC_011769.1 2480360 2481904 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: dsy:DSY3248 hypothetical protein; hypothetical protein complement(2480360..2481904) Desulfovibrio vulgaris str. 'Miyazaki F' 7173920 YP_002436413.1 CDS DvMF_2002 NC_011769.1 2481968 2482930 R PFAM: conserved hypothetical protein; KEGG: dsy:DSY3249 hypothetical protein; hypothetical protein complement(2481968..2482930) Desulfovibrio vulgaris str. 'Miyazaki F' 7173921 YP_002436414.1 CDS DvMF_2003 NC_011769.1 2483297 2484460 R PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase; altronate dehydratase complement(2483297..2484460) Desulfovibrio vulgaris str. 'Miyazaki F' 7173922 YP_002436415.1 CDS DvMF_2004 NC_011769.1 2484465 2484749 R KEGG: csa:Csal_1765 D-galactarate dehydratase/altronate hydrolase-like protein; D-galactarate dehydratase/altronate hydrolase-like protein complement(2484465..2484749) Desulfovibrio vulgaris str. 'Miyazaki F' 7173923 YP_002436416.1 CDS DvMF_2005 NC_011769.1 2485775 2486938 R PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; KEGG: csa:Csal_1766 altronate dehydratase; altronate dehydratase complement(2485775..2486938) Desulfovibrio vulgaris str. 'Miyazaki F' 7173924 YP_002436417.1 CDS DvMF_2006 NC_011769.1 2486943 2487227 R KEGG: csa:Csal_1765 D-galactarate dehydratase/altronate hydrolase-like protein; D-galactarate dehydratase/altronate hydrolase-like protein complement(2486943..2487227) Desulfovibrio vulgaris str. 'Miyazaki F' 7173925 YP_002436418.1 CDS DvMF_2007 NC_011769.1 2487516 2487932 R KEGG: dde:Dde_0387 hypothetical protein; hypothetical protein complement(2487516..2487932) Desulfovibrio vulgaris str. 'Miyazaki F' 7173926 YP_002436419.1 CDS DvMF_2008 NC_011769.1 2488005 2488334 R KEGG: dde:Dde_0386 hypothetical protein; hypothetical protein complement(2488005..2488334) Desulfovibrio vulgaris str. 'Miyazaki F' 7173927 YP_002436420.1 CDS DvMF_2009 NC_011769.1 2488545 2489330 R PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_0385 flagellar basal body-associated protein; flagellar basal body-associated protein FliL complement(2488545..2489330) Desulfovibrio vulgaris str. 'Miyazaki F' 7173928 YP_002436421.1 CDS DvMF_2010 NC_011769.1 2489574 2489954 R PFAM: response regulator receiver; KEGG: dde:Dde_0384 response regulator receiver domain-containing protein; response regulator receiver protein complement(2489574..2489954) Desulfovibrio vulgaris str. 'Miyazaki F' 7173929 YP_002436422.1 CDS DvMF_2011 NC_011769.1 2489985 2490782 R KEGG: dde:Dde_0383 sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma 28 subunit FliA/WhiG complement(2489985..2490782) Desulfovibrio vulgaris str. 'Miyazaki F' 7173930 YP_002436423.1 CDS DvMF_2012 NC_011769.1 2490736 2491551 R PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0382 flagellar synthesis regulator FleN; cobyrinic acid ac-diamide synthase complement(2490736..2491551) Desulfovibrio vulgaris str. 'Miyazaki F' 7173931 YP_002436424.1 CDS DvMF_2013 NC_011769.1 2491656 2492915 R KEGG: dde:Dde_0381 flagellar biosynthesis protein FlhF; flagellar biosynthesis protein FlhF complement(2491656..2492915) Desulfovibrio vulgaris str. 'Miyazaki F' 7173932 YP_002436425.1 CDS flhA NC_011769.1 2492985 2495096 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2492985..2495096) Desulfovibrio vulgaris str. 'Miyazaki F' 7173933 YP_002436426.1 CDS flhB NC_011769.1 2495153 2496223 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(2495153..2496223) Desulfovibrio vulgaris str. 'Miyazaki F' 7173934 YP_002436427.1 CDS DvMF_2016 NC_011769.1 2496304 2497098 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: dde:Dde_0378 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR complement(2496304..2497098) Desulfovibrio vulgaris str. 'Miyazaki F' 7173935 YP_002436428.1 CDS DvMF_2017 NC_011769.1 2497245 2499437 D TIGRFAM: sulfate transporter; PFAM: sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; sulfate transporter; KEGG: mgm:Mmc1_1638 sulfate transporter; sulfate transporter 2497245..2499437 Desulfovibrio vulgaris str. 'Miyazaki F' 7173936 YP_002436429.1 CDS DvMF_2018 NC_011769.1 2499434 2500591 D KEGG: dde:Dde_0388 hypothetical protein; hypothetical protein 2499434..2500591 Desulfovibrio vulgaris str. 'Miyazaki F' 7173937 YP_002436430.1 CDS DvMF_2019 NC_011769.1 2500863 2501918 D PFAM: dihydrouridine synthase; KEGG: dde:Dde_0389 dihydrouridine synthase family protein; dihydrouridine synthase 2500863..2501918 Desulfovibrio vulgaris str. 'Miyazaki F' 7173938 YP_002436431.1 CDS DvMF_2020 NC_011769.1 2501915 2502760 D KEGG: dde:Dde_0390 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 2501915..2502760 Desulfovibrio vulgaris str. 'Miyazaki F' 7173939 YP_002436432.1 CDS DvMF_2021 NC_011769.1 2502889 2503839 D PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_0391 response regulator receiver (CheY-like) modulated CheW protein; chemotaxis protein CheW 2502889..2503839 Desulfovibrio vulgaris str. 'Miyazaki F' 7173940 YP_002436433.1 CDS DvMF_2022 NC_011769.1 2504195 2505976 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: gbm:Gbem_0222 GntR family transcriptional regulator with aminotransferase domain; GntR family transcriptional regulator 2504195..2505976 Desulfovibrio vulgaris str. 'Miyazaki F' 7173941 YP_002436434.1 CDS DvMF_2023 NC_011769.1 2506112 2506480 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: gbm:Gbem_0223 pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase-related FMN-binding protein complement(2506112..2506480) Desulfovibrio vulgaris str. 'Miyazaki F' 7173942 YP_002436435.1 CDS DvMF_2024 NC_011769.1 2506764 2507945 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: dde:Dde_0120 ribosomal large subunit pseudouridine synthase C; pseudouridine synthase complement(2506764..2507945) Desulfovibrio vulgaris str. 'Miyazaki F' 7173943 YP_002436436.1 CDS DvMF_2025 NC_011769.1 2508254 2509918 R KEGG: dde:Dde_0121 hypothetical protein; hypothetical protein complement(2508254..2509918) Desulfovibrio vulgaris str. 'Miyazaki F' 7173944 YP_002436437.1 CDS DvMF_2026 NC_011769.1 2510451 2511794 D PFAM: Fmu (Sun) domain protein; KEGG: dde:Dde_0122 NOL1/NOP2/sun family protein; Fmu (Sun) domain-containing protein 2510451..2511794 Desulfovibrio vulgaris str. 'Miyazaki F' 7173945 YP_002436438.1 CDS DvMF_2027 NC_011769.1 2512017 2512979 R PFAM: inositol monophosphatase; KEGG: dde:Dde_0123 3'(2'),5'-bisphosphate nucleotidase; inositol monophosphatase complement(2512017..2512979) Desulfovibrio vulgaris str. 'Miyazaki F' 7173946 YP_002436439.1 CDS DvMF_2028 NC_011769.1 2513208 2513909 D PFAM: NLP/P60 protein; KEGG: sfu:Sfum_2195 NLP/P60 protein; NLP/P60 protein 2513208..2513909 Desulfovibrio vulgaris str. 'Miyazaki F' 7173947 YP_002436440.1 CDS DvMF_2029 NC_011769.1 2514212 2514499 R PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_0125 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(2514212..2514499) Desulfovibrio vulgaris str. 'Miyazaki F' 7173948 YP_002436441.1 CDS DvMF_2030 NC_011769.1 2514765 2515484 D KEGG: dde:Dde_0126 MerR family transcriptional regulator; MerR family transcriptional regulator 2514765..2515484 Desulfovibrio vulgaris str. 'Miyazaki F' 7173949 YP_002436442.1 CDS DvMF_2031 NC_011769.1 2516071 2518383 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2516071..2518383 Desulfovibrio vulgaris str. 'Miyazaki F' 7173950 YP_002436443.1 CDS DvMF_2032 NC_011769.1 2518527 2519369 D KEGG: dde:Dde_0114 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase AAA; cell division ATP-binding protein FtsE 2518527..2519369 Desulfovibrio vulgaris str. 'Miyazaki F' 7173951 YP_002436444.1 CDS DvMF_2033 NC_011769.1 2519369 2520271 D PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0115 cell division protein FtsX; hypothetical protein 2519369..2520271 Desulfovibrio vulgaris str. 'Miyazaki F' 7173952 YP_002436445.1 CDS DvMF_2034 NC_011769.1 2520611 2522278 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2520611..2522278 Desulfovibrio vulgaris str. 'Miyazaki F' 7173953 YP_002436446.1 CDS DvMF_2035 NC_011769.1 2522834 2525176 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2522834..2525176 Desulfovibrio vulgaris str. 'Miyazaki F' 7173954 YP_002436447.1 CDS DvMF_2036 NC_011769.1 2525539 2526345 D PFAM: UbiE/COQ5 methyltransferase; methionine biosynthesis MetW protein; methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_0009 hypothetical protein; methyltransferase type 11 2525539..2526345 Desulfovibrio vulgaris str. 'Miyazaki F' 7173955 YP_002436448.1 CDS hisS NC_011769.1 2526655 2527935 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2526655..2527935 Desulfovibrio vulgaris str. 'Miyazaki F' 7173956 YP_002436449.1 CDS aspS NC_011769.1 2528054 2529898 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2528054..2529898 Desulfovibrio vulgaris str. 'Miyazaki F' 7173957 YP_002436450.1 CDS DvMF_2039 NC_011769.1 2530050 2530604 D KEGG: dde:Dde_0013 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 2530050..2530604 Desulfovibrio vulgaris str. 'Miyazaki F' 7173958 YP_002436451.1 CDS DvMF_2040 NC_011769.1 2530606 2531715 D TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: dde:Dde_0014 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 2530606..2531715 Desulfovibrio vulgaris str. 'Miyazaki F' 7173959 YP_002436452.1 CDS DvMF_2041 NC_011769.1 2531921 2532985 D PFAM: protein of unknown function DUF116; KEGG: dde:Dde_0015 hypothetical protein; hypothetical protein 2531921..2532985 Desulfovibrio vulgaris str. 'Miyazaki F' 7173960 YP_002436453.1 CDS DvMF_2042 NC_011769.1 2532982 2534574 D PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dde:Dde_0017 sun protein; NusB/RsmB/TIM44 2532982..2534574 Desulfovibrio vulgaris str. 'Miyazaki F' 7173961 YP_002436454.1 CDS DvMF_2043 NC_011769.1 2534679 2535083 R KEGG: sfu:Sfum_2138 hypothetical protein; hypothetical protein complement(2534679..2535083) Desulfovibrio vulgaris str. 'Miyazaki F' 7173962 YP_002436455.1 CDS DvMF_2044 NC_011769.1 2535429 2536454 R PFAM: PfkB domain protein; KEGG: dde:Dde_0028 D-alpha,beta-D-heptose 7-phosphate 1-kinase; PfkB domain-containing protein complement(2535429..2536454) Desulfovibrio vulgaris str. 'Miyazaki F' 7173963 YP_002436456.1 CDS DvMF_2045 NC_011769.1 2536517 2537449 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dde:Dde_0029 chromosome segregation DNA-binding protein; parB-like partition protein complement(2536517..2537449) Desulfovibrio vulgaris str. 'Miyazaki F' 7173964 YP_002436457.1 CDS DvMF_2046 NC_011769.1 2537541 2537951 D KEGG: dde:Dde_0030 hypothetical protein; hypothetical protein 2537541..2537951 Desulfovibrio vulgaris str. 'Miyazaki F' 7173965 YP_002436458.1 CDS DvMF_2047 NC_011769.1 2537995 2538783 R PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_0031 chromosome segregation ATPase; cobyrinic acid ac-diamide synthase complement(2537995..2538783) Desulfovibrio vulgaris str. 'Miyazaki F' 7173966 YP_002436459.1 CDS DvMF_2048 NC_011769.1 2539423 2540430 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_0033 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase complement(2539423..2540430) Desulfovibrio vulgaris str. 'Miyazaki F' 7173967 YP_002436460.1 CDS DvMF_2049 NC_011769.1 2540819 2541568 R PFAM: band 7 protein; KEGG: dde:Dde_0036 SPFH domain-containing protein/band 7 family protein; hypothetical protein complement(2540819..2541568) Desulfovibrio vulgaris str. 'Miyazaki F' 7173968 YP_002436461.1 CDS DvMF_2050 NC_011769.1 2542149 2543201 R KEGG: dde:Dde_0038 hypothetical protein; hypothetical protein complement(2542149..2543201) Desulfovibrio vulgaris str. 'Miyazaki F' 7173969 YP_002436462.1 CDS DvMF_2051 NC_011769.1 2543183 2544430 R TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: dde:Dde_0039 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase complement(2543183..2544430) Desulfovibrio vulgaris str. 'Miyazaki F' 7173970 YP_002436463.1 CDS DvMF_2052 NC_011769.1 2544663 2545223 R KEGG: lip:LI0583 hypothetical protein; hypothetical protein complement(2544663..2545223) Desulfovibrio vulgaris str. 'Miyazaki F' 7173971 YP_002436464.1 CDS queA NC_011769.1 2545433 2546686 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2545433..2546686 Desulfovibrio vulgaris str. 'Miyazaki F' 7173972 YP_002436465.1 CDS DvMF_2054 NC_011769.1 2547035 2547274 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, delta subunit; 4Fe-4S ferredoxin 2547035..2547274 Desulfovibrio vulgaris str. 'Miyazaki F' 7173973 YP_002436466.1 CDS DvMF_2055 NC_011769.1 2547279 2548364 D catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 2547279..2548364 Desulfovibrio vulgaris str. 'Miyazaki F' 7173974 YP_002436467.1 CDS DvMF_2056 NC_011769.1 2548364 2549155 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, subunit beta; thiamine pyrophosphate TPP-binding domain-containing protein 2548364..2549155 Desulfovibrio vulgaris str. 'Miyazaki F' 7173975 YP_002436468.1 CDS DvMF_2057 NC_011769.1 2549155 2549697 D PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, subunit gamma; pyruvate ferredoxin/flavodoxin oxidoreductase 2549155..2549697 Desulfovibrio vulgaris str. 'Miyazaki F' 7173976 YP_002436469.1 CDS DvMF_2058 NC_011769.1 2549908 2555493 R KEGG: rec:RHECIAT_CH0003310 superfamily I DNA and RNA helicase protein; superfamily I DNA and RNA helicase protein complement(2549908..2555493) Desulfovibrio vulgaris str. 'Miyazaki F' 7173977 YP_002436470.1 CDS DvMF_2059 NC_011769.1 2555775 2556065 D KEGG: mmw:Mmwyl1_1978 hypothetical protein; hypothetical protein 2555775..2556065 Desulfovibrio vulgaris str. 'Miyazaki F' 7173978 YP_002436471.1 CDS DvMF_2060 NC_011769.1 2556443 2556850 D PFAM: small multidrug resistance protein; KEGG: dde:Dde_2406 SMR family multidrug efflux pump; small multidrug resistance protein 2556443..2556850 Desulfovibrio vulgaris str. 'Miyazaki F' 7173979 YP_002436472.1 CDS DvMF_2061 NC_011769.1 2556847 2557176 D PFAM: small multidrug resistance protein; KEGG: dde:Dde_2405 SMR family multidrug efflux pump; small multidrug resistance protein 2556847..2557176 Desulfovibrio vulgaris str. 'Miyazaki F' 7173980 YP_002436473.1 CDS DvMF_2062 NC_011769.1 2557436 2558158 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gbm:Gbem_2109 ABC transporter; ABC transporter complement(2557436..2558158) Desulfovibrio vulgaris str. 'Miyazaki F' 7173981 YP_002436474.1 CDS DvMF_2063 NC_011769.1 2558427 2559620 R PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_1553 protein of unknown function DUF214; hypothetical protein complement(2558427..2559620) Desulfovibrio vulgaris str. 'Miyazaki F' 7173982 YP_002436475.1 CDS DvMF_2064 NC_011769.1 2559794 2560255 R KEGG: gbm:Gbem_1096 hypothetical protein; hypothetical protein complement(2559794..2560255) Desulfovibrio vulgaris str. 'Miyazaki F' 7173983 YP_002436476.1 CDS DvMF_2065 NC_011769.1 2560483 2560947 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dde:Dde_0414 hypothetical protein; ybaK/ebsC protein 2560483..2560947 Desulfovibrio vulgaris str. 'Miyazaki F' 7173984 YP_002436477.1 CDS DvMF_2066 NC_011769.1 2561057 2563573 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: sfu:Sfum_3773 heavy metal translocating P-type ATPase; ATPase P complement(2561057..2563573) Desulfovibrio vulgaris str. 'Miyazaki F' 7173985 YP_002436478.1 CDS DvMF_2067 NC_011769.1 2564117 2565424 R KEGG: dde:Dde_0108 hypothetical protein; hypothetical protein complement(2564117..2565424) Desulfovibrio vulgaris str. 'Miyazaki F' 7173986 YP_002436479.1 CDS DvMF_2068 NC_011769.1 2565865 2566827 R PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_0107 lipoprotein; peptidase M48 Ste24p complement(2565865..2566827) Desulfovibrio vulgaris str. 'Miyazaki F' 7173987 YP_002436480.1 CDS DvMF_2069 NC_011769.1 2567011 2569287 D KEGG: dde:Dde_0106 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I 2567011..2569287 Desulfovibrio vulgaris str. 'Miyazaki F' 7173988 YP_002436481.1 CDS DvMF_2070 NC_011769.1 2569907 2571382 D KEGG: pfl:PFL_0783 pesticin domain-containing protein; hypothetical protein 2569907..2571382 Desulfovibrio vulgaris str. 'Miyazaki F' 7173989 YP_002436482.1 CDS DvMF_2071 NC_011769.1 2571379 2572233 D hypothetical protein 2571379..2572233 Desulfovibrio vulgaris str. 'Miyazaki F' 7173990 YP_002436483.1 CDS DvMF_2072 NC_011769.1 2572308 2573084 D hypothetical protein 2572308..2573084 Desulfovibrio vulgaris str. 'Miyazaki F' 7173991 YP_002436484.1 CDS DvMF_2073 NC_011769.1 2573304 2574506 R KEGG: dac:Daci_0170 Fe-S oxidoreductase; hypothetical protein complement(2573304..2574506) Desulfovibrio vulgaris str. 'Miyazaki F' 7173992 YP_002436485.1 CDS DvMF_2074 NC_011769.1 2574675 2575799 R PFAM: glycosyl transferase family 2; KEGG: chy:CHY_2608 glycosyl transferase; family 2 glycosyl transferase complement(2574675..2575799) Desulfovibrio vulgaris str. 'Miyazaki F' 7173993 YP_002436486.1 CDS DvMF_2075 NC_011769.1 2576452 2578038 D TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; fumarate hydratase class II; KEGG: dde:Dde_0240 fumarate hydratase; class II fumarate hydratase 2576452..2578038 Desulfovibrio vulgaris str. 'Miyazaki F' 7173994 YP_002436487.1 CDS DvMF_2076 NC_011769.1 2578610 2579161 D PFAM: GPR1/FUN34/yaaH family protein; KEGG: dde:Dde_0237 Gpr1/Fun34/YaaH family protein; GPR1/FUN34/yaaH family protein 2578610..2579161 Desulfovibrio vulgaris str. 'Miyazaki F' 7173995 YP_002436488.1 CDS DvMF_2077 NC_011769.1 2580554 2582362 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0210 AhpF family protein/thioredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2580554..2582362) Desulfovibrio vulgaris str. 'Miyazaki F' 7173996 YP_002436489.1 CDS DvMF_2078 NC_011769.1 2582664 2583170 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dde:Dde_0209 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 2582664..2583170 Desulfovibrio vulgaris str. 'Miyazaki F' 7173997 YP_002436490.1 CDS DvMF_2079 NC_011769.1 2583531 2585348 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: dde:Dde_0236 hypothetical protein; NmrA family protein 2583531..2585348 Desulfovibrio vulgaris str. 'Miyazaki F' 7173998 YP_002436491.1 CDS DvMF_2080 NC_011769.1 2585908 2587233 R PFAM: peptidase M23; KEGG: dde:Dde_3784 M24/M37 family peptidase; peptidase M23 complement(2585908..2587233) Desulfovibrio vulgaris str. 'Miyazaki F' 7173999 YP_002436492.1 CDS DvMF_2081 NC_011769.1 2588354 2589688 D KEGG: dde:Dde_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: replication initiation factor DnaA; Chromosomal replication initiator DnaA; SMART: ATPase AAA; chromosomal replication initiator protein DnaA 2588354..2589688 Desulfovibrio vulgaris str. 'Miyazaki F' 7174000 YP_002436493.1 CDS DvMF_2082 NC_011769.1 2589828 2590994 D KEGG: dde:Dde_0002 DNA polymerase III beta subunit; TIGRFAM: DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 2589828..2590994 Desulfovibrio vulgaris str. 'Miyazaki F' 7174001 YP_002436494.1 CDS DvMF_2083 NC_011769.1 2591326 2593722 D KEGG: dde:Dde_0003 DNA gyrase subunit B; TIGRFAM: DNA gyrase subunit beta; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; DNA topoisomerase type IIsubunit alpha B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit beta 2591326..2593722 Desulfovibrio vulgaris str. 'Miyazaki F' 7174002 YP_002436495.1 CDS DvMF_2084 NC_011769.1 2593967 2596405 D KEGG: dde:Dde_0004 DNA gyrase subunit A; TIGRFAM: DNA gyrase subunit alpha; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit alpha 2593967..2596405 Desulfovibrio vulgaris str. 'Miyazaki F' 7174003 YP_002436496.1 CDS DvMF_2085 NC_011769.1 2596594 2597433 D KEGG: dde:Dde_0005 lipoprotein; lipoprotein 2596594..2597433 Desulfovibrio vulgaris str. 'Miyazaki F' 7174004 YP_002436497.1 CDS DvMF_2086 NC_011769.1 2597678 2598139 R PFAM: UspA domain protein; KEGG: dde:Dde_0098 universal stress protein; UspA domain-containing protein complement(2597678..2598139) Desulfovibrio vulgaris str. 'Miyazaki F' 7174005 YP_002436498.1 CDS asnC NC_011769.1 2598392 2599807 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(2598392..2599807) Desulfovibrio vulgaris str. 'Miyazaki F' 7174006 YP_002436499.1 CDS DvMF_2088 NC_011769.1 2600156 2600329 D KEGG: dde:Dde_0885 hypothetical protein; hypothetical protein 2600156..2600329 Desulfovibrio vulgaris str. 'Miyazaki F' 7174007 YP_002436500.1 CDS DvMF_2089 NC_011769.1 2601099 2601707 R PFAM: rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3337 nigerythrin; rubrerythrin complement(2601099..2601707) Desulfovibrio vulgaris str. 'Miyazaki F' 7174009 YP_002436501.1 CDS DvMF_2090 NC_011769.1 2602032 2603102 D KEGG: gsu:GSU0757 lipoprotein; hypothetical protein 2602032..2603102 Desulfovibrio vulgaris str. 'Miyazaki F' 7174010 YP_002436502.1 CDS DvMF_2091 NC_011769.1 2603601 2606354 D KEGG: gur:Gura_2632 hypothetical protein; hypothetical protein 2603601..2606354 Desulfovibrio vulgaris str. 'Miyazaki F' 7174011 YP_002436503.1 CDS DvMF_2092 NC_011769.1 2606731 2608170 D PFAM: conserved hypothetical protein; KEGG: drm:Dred_1452 conserved hypothetical protein 698; hypothetical protein 2606731..2608170 Desulfovibrio vulgaris str. 'Miyazaki F' 7174012 YP_002436504.1 CDS DvMF_2093 NC_011769.1 2608267 2608440 D KEGG: bbt:BBta_2157 hypothetical protein; hypothetical protein 2608267..2608440 Desulfovibrio vulgaris str. 'Miyazaki F' 7174013 YP_002436505.1 CDS DvMF_2094 NC_011769.1 2608540 2611158 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 2608540..2611158 Desulfovibrio vulgaris str. 'Miyazaki F' 7174014 YP_002436506.1 CDS DvMF_2095 NC_011769.1 2611155 2612570 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0879 two component Fis family transcriptional regulator; Fis family transcriptional regulator 2611155..2612570 Desulfovibrio vulgaris str. 'Miyazaki F' 7174015 YP_002436507.1 CDS DvMF_2096 NC_011769.1 2612590 2612928 D hypothetical protein 2612590..2612928 Desulfovibrio vulgaris str. 'Miyazaki F' 7174016 YP_002436508.1 CDS DvMF_2097 NC_011769.1 2613487 2614197 D PFAM: NADPH-dependent FMN reductase; KEGG: mba:Mbar_A2580 iron-sulfur flavoprotein; NADPH-dependent FMN reductase 2613487..2614197 Desulfovibrio vulgaris str. 'Miyazaki F' 7174017 YP_002436509.1 CDS DvMF_2098 NC_011769.1 2614478 2615878 D PFAM: major facilitator superfamily MFS_1; KEGG: mba:Mbar_A3306 efflux PumP antibiotic resistance protein; major facilitator superfamily protein 2614478..2615878 Desulfovibrio vulgaris str. 'Miyazaki F' 7174018 YP_002436510.1 CDS DvMF_2099 NC_011769.1 2616009 2617352 R TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: dde:Dde_0104 L-glutamine synthetase; glutamine synthetase complement(2616009..2617352) Desulfovibrio vulgaris str. 'Miyazaki F' 7174019 YP_002436511.1 CDS DvMF_2100 NC_011769.1 2617859 2618833 D KEGG: ang:An12g06380 hypothetical protein Pfam: Collagen PROSITE: ALA_RICH ASP_RICH GLY_RICH SER_RICH; hypothetical protein 2617859..2618833 Desulfovibrio vulgaris str. 'Miyazaki F' 7174020 YP_002436512.1 CDS DvMF_2101 NC_011769.1 2619163 2620602 D PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_3407 major facilitator transporter; major facilitator superfamily protein 2619163..2620602 Desulfovibrio vulgaris str. 'Miyazaki F' 7174021 YP_002436513.1 CDS DvMF_2102 NC_011769.1 2620753 2621622 R PFAM: UspA domain protein; KEGG: tbd:Tbd_2614 universal stress protein; UspA domain-containing protein complement(2620753..2621622) Desulfovibrio vulgaris str. 'Miyazaki F' 7174022 YP_002436514.1 CDS DvMF_2103 NC_011769.1 2621609 2622667 R PFAM: protein of unknown function DUF81; KEGG: tbd:Tbd_2613 hypothetical protein; hypothetical protein complement(2621609..2622667) Desulfovibrio vulgaris str. 'Miyazaki F' 7174023 YP_002436515.1 CDS DvMF_2104 NC_011769.1 2622691 2623011 R KEGG: tbd:Tbd_2612 hypothetical protein; hypothetical protein complement(2622691..2623011) Desulfovibrio vulgaris str. 'Miyazaki F' 7174024 YP_002436516.1 CDS DvMF_2105 NC_011769.1 2623089 2623646 R KEGG: tbd:Tbd_2614 universal stress protein; hypothetical protein complement(2623089..2623646) Desulfovibrio vulgaris str. 'Miyazaki F' 7174025 YP_002436517.1 CDS DvMF_2106 NC_011769.1 2623737 2623976 R hypothetical protein complement(2623737..2623976) Desulfovibrio vulgaris str. 'Miyazaki F' 7174026 YP_002436518.1 CDS DvMF_2107 NC_011769.1 2624260 2626566 D KEGG: dola:16964; PFAM: response regulator receiver; AAA ATPase central domain protein; peptidase S16; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; response regulator receiver protein 2624260..2626566 Desulfovibrio vulgaris str. 'Miyazaki F' 7174027 YP_002436519.1 CDS DvMF_2108 NC_011769.1 2626554 2628242 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dol:Dole_2392 histidine kinase; integral membrane sensor signal transduction histidine kinase 2626554..2628242 Desulfovibrio vulgaris str. 'Miyazaki F' 7174028 YP_002436520.1 CDS DvMF_2109 NC_011769.1 2628239 2629786 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: mxa:MXAN_2516 sigma-54 dependent DNA-binding response regulator; Fis family transcriptional regulator 2628239..2629786 Desulfovibrio vulgaris str. 'Miyazaki F' 7174029 YP_002436521.1 CDS DvMF_2110 NC_011769.1 2630115 2631065 D KEGG: dde:Dde_3778 oligopeptide/dipeptide ABC transporter ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; oligopeptide/dipeptide ABC transporter ATPase 2630115..2631065 Desulfovibrio vulgaris str. 'Miyazaki F' 7174030 YP_002436522.1 CDS DvMF_2111 NC_011769.1 2631458 2631952 D KEGG: dde:Dde_0060 hypothetical protein; hypothetical protein 2631458..2631952 Desulfovibrio vulgaris str. 'Miyazaki F' 7174031 YP_002436523.1 CDS DvMF_2112 NC_011769.1 2632386 2633303 R PFAM: ADP-ribosylation/crystallin J1; KEGG: dde:Dde_0059 ADP-ribosylglycohydrolase family protein; ADP-ribosylation/crystallin J1 complement(2632386..2633303) Desulfovibrio vulgaris str. 'Miyazaki F' 7174032 YP_002436524.1 CDS DvMF_2113 NC_011769.1 2633693 2633878 R hypothetical protein complement(2633693..2633878) Desulfovibrio vulgaris str. 'Miyazaki F' 7174033 YP_002436525.1 CDS DvMF_2114 NC_011769.1 2634130 2634861 D PFAM: rRNA methylase; KEGG: dde:Dde_0095 methyltransferase (); rRNA methylase 2634130..2634861 Desulfovibrio vulgaris str. 'Miyazaki F' 7174034 YP_002436526.1 CDS DvMF_2115 NC_011769.1 2635097 2635339 D KEGG: dde:Dde_0096 hypothetical protein; hypothetical protein 2635097..2635339 Desulfovibrio vulgaris str. 'Miyazaki F' 7174035 YP_002436527.1 CDS DvMF_2116 NC_011769.1 2635448 2635906 R KEGG: lxx:Lxx18120 two-component system, regulatory protein; two-component system, regulatory protein complement(2635448..2635906) Desulfovibrio vulgaris str. 'Miyazaki F' 7174036 YP_002436528.1 CDS DvMF_2117 NC_011769.1 2636166 2636789 R PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_3772 hypothetical protein; hypothetical protein complement(2636166..2636789) Desulfovibrio vulgaris str. 'Miyazaki F' 7174037 YP_002436529.1 CDS DvMF_2118 NC_011769.1 2636779 2637171 R KEGG: dde:Dde_3773 hypothetical protein; hypothetical protein complement(2636779..2637171) Desulfovibrio vulgaris str. 'Miyazaki F' 7174038 YP_002436530.1 CDS DvMF_2119 NC_011769.1 2637174 2637842 R KEGG: dde:Dde_3774 hypothetical protein; hypothetical protein complement(2637174..2637842) Desulfovibrio vulgaris str. 'Miyazaki F' 7174039 YP_002436531.1 CDS DvMF_2120 NC_011769.1 2638312 2638500 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3775 ferredoxin I; 4Fe-4S ferredoxin complement(2638312..2638500) Desulfovibrio vulgaris str. 'Miyazaki F' 7174040 YP_002436532.1 CDS DvMF_2121 NC_011769.1 2638796 2640373 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dde:Dde_3776 PDZ/DHR/GLGF; 2-alkenal reductase complement(2638796..2640373) Desulfovibrio vulgaris str. 'Miyazaki F' 7174041 YP_002436533.1 CDS DvMF_2122 NC_011769.1 2640719 2641798 D KEGG: dde:Dde_3777 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2640719..2641798 Desulfovibrio vulgaris str. 'Miyazaki F' 7174042 YP_002436534.1 CDS DvMF_2123 NC_011769.1 2642183 2643145 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(2642183..2643145) Desulfovibrio vulgaris str. 'Miyazaki F' 7174043 YP_002436535.1 CDS DvMF_2124 NC_011769.1 2643382 2644011 D PFAM: lysine exporter (LYSE/YGGA); KEGG: dde:Dde_3475 L-lysine exporter; lysine exporter protein LysE/YggA 2643382..2644011 Desulfovibrio vulgaris str. 'Miyazaki F' 7174044 YP_002436536.1 CDS DvMF_2125 NC_011769.1 2644383 2645978 R PFAM: helicase; DbpA RNA-binding domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases; KEGG: dde:Dde_0152 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(2644383..2645978) Desulfovibrio vulgaris str. 'Miyazaki F' 7174045 YP_002436537.1 CDS DvMF_2126 NC_011769.1 2645981 2646298 R PFAM: excinuclease ABC C subunit domain protein; KEGG: pnu:Pnuc_0446 excinuclease ABC subunit C; excinuclease ABC C subunit domain protein complement(2645981..2646298) Desulfovibrio vulgaris str. 'Miyazaki F' 7174046 YP_002436538.1 CDS DvMF_2127 NC_011769.1 2646578 2647318 R KEGG: dde:Dde_0151 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein complement(2646578..2647318) Desulfovibrio vulgaris str. 'Miyazaki F' 7174047 YP_002436539.1 CDS DvMF_2128 NC_011769.1 2647644 2648234 R TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: dde:Dde_0150 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2647644..2648234) Desulfovibrio vulgaris str. 'Miyazaki F' 7174048 YP_002436540.1 CDS DvMF_2129 NC_011769.1 2649696 2651351 D TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: chy:CHY_0431 L-lactate/glycolate permease; L-lactate transport 2649696..2651351 Desulfovibrio vulgaris str. 'Miyazaki F' 7174050 YP_002436541.1 CDS DvMF_2130 NC_011769.1 2652194 2652811 R PFAM: lysine exporter (LYSE/YGGA); KEGG: pau:PA14_69310 LysE family efflux protein; lysine exporter protein LysE/YggA complement(2652194..2652811) Desulfovibrio vulgaris str. 'Miyazaki F' 7174051 YP_002436542.1 CDS DvMF_2131 NC_011769.1 2653517 2654314 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 2653517..2654314 Desulfovibrio vulgaris str. 'Miyazaki F' 7174053 YP_002436543.1 CDS infA NC_011769.1 2654729 2654947 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2654729..2654947 Desulfovibrio vulgaris str. 'Miyazaki F' 7174054 YP_002436544.1 CDS DvMF_2133 NC_011769.1 2655462 2657498 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_3782 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase complement(2655462..2657498) Desulfovibrio vulgaris str. 'Miyazaki F' 7174055 YP_002436545.1 CDS DvMF_2134 NC_011769.1 2657611 2658819 R KEGG: dde:Dde_3779 MerR family transcriptional regulator; MerR family transcriptional regulator complement(2657611..2658819) Desulfovibrio vulgaris str. 'Miyazaki F' 7174056 YP_002436546.1 CDS DvMF_2135 NC_011769.1 2659395 2660492 D TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: aav:Aave_3447 TRAP dicarboxylate transporter DctP subunit; TRAP dicarboxylate transporter subunit DctP 2659395..2660492 Desulfovibrio vulgaris str. 'Miyazaki F' 7174057 YP_002436547.1 CDS DvMF_2136 NC_011769.1 2660489 2661226 D PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pde:Pden_3481 tripartite ATP-independent periplasmic transporter DctQ component; tripartite ATP-independent periplasmic transporter DctQ component 2660489..2661226 Desulfovibrio vulgaris str. 'Miyazaki F' 7174058 YP_002436548.1 CDS DvMF_2137 NC_011769.1 2661228 2662511 D TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit; KEGG: bbr:BB1744 hypothetical protein; TRAP dicarboxylate transporter subunit DctM 2661228..2662511 Desulfovibrio vulgaris str. 'Miyazaki F' 7174059 YP_002436549.1 CDS DvMF_2138 NC_011769.1 2662566 2663579 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: npu:Npun_F4963 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2662566..2663579) Desulfovibrio vulgaris str. 'Miyazaki F' 7174060 YP_002436550.1 CDS DvMF_2139 NC_011769.1 2663770 2663901 D hypothetical protein 2663770..2663901 Desulfovibrio vulgaris str. 'Miyazaki F' 7174061 YP_002436551.1 CDS DvMF_2140 NC_011769.1 2664205 2664789 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: dde:Dde_1618 flavodoxin-like fold domain-containing protein; NAD(P)H dehydrogenase (quinone) 2664205..2664789 Desulfovibrio vulgaris str. 'Miyazaki F' 7174062 YP_002436552.1 CDS DvMF_2141 NC_011769.1 2664868 2666997 R PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase; peptidase U32 complement(2664868..2666997) Desulfovibrio vulgaris str. 'Miyazaki F' 7174063 YP_002436553.1 CDS DvMF_2142 NC_011769.1 2668098 2668967 D KEGG: dde:Dde_0057 dihydroorotate oxidase B, electron transfer subunit; dihydroorotate oxidase B, electron transfer subunit 2668098..2668967 Desulfovibrio vulgaris str. 'Miyazaki F' 7174064 YP_002436554.1 CDS DvMF_2143 NC_011769.1 2669027 2669953 D TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: dde:Dde_0056 dihydroorotate oxidase B, catalytic subunit; dihydroorotate dehydrogenase 2669027..2669953 Desulfovibrio vulgaris str. 'Miyazaki F' 7174065 YP_002436555.1 CDS DvMF_2144 NC_011769.1 2670048 2670587 R PFAM: GCN5-related N-acetyltransferase; KEGG: mbb:BCG_0971 hypothetical protein; N-acetyltransferase GCN5 complement(2670048..2670587) Desulfovibrio vulgaris str. 'Miyazaki F' 7174066 YP_002436556.1 CDS DvMF_2145 NC_011769.1 2670584 2670856 R PFAM: protein of unknown function DUF1778; KEGG: neu:NE1104 hypothetical protein; hypothetical protein complement(2670584..2670856) Desulfovibrio vulgaris str. 'Miyazaki F' 7174067 YP_002436557.1 CDS DvMF_2146 NC_011769.1 2671182 2674223 R TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; aldehyde dehydrogenase_; KEGG: dde:Dde_0054 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase complement(2671182..2674223) Desulfovibrio vulgaris str. 'Miyazaki F' 7174068 YP_002436558.1 CDS DvMF_2147 NC_011769.1 2674692 2675231 R KEGG: dde:Dde_0111 zinc resistance-associated protein; zinc resistance-associated protein complement(2674692..2675231) Desulfovibrio vulgaris str. 'Miyazaki F' 7174069 YP_002436559.1 CDS DvMF_2148 NC_011769.1 2675567 2677756 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_0110 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 2675567..2677756 Desulfovibrio vulgaris str. 'Miyazaki F' 7174070 YP_002436560.1 CDS DvMF_2149 NC_011769.1 2677753 2679186 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0109 two component Fis family transcriptional regulator; Fis family transcriptional regulator 2677753..2679186 Desulfovibrio vulgaris str. 'Miyazaki F' 7174071 YP_002436561.1 CDS DvMF_2150 NC_011769.1 2679362 2680270 R PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_3636 glycosyl transferase; family 2 glycosyl transferase complement(2679362..2680270) Desulfovibrio vulgaris str. 'Miyazaki F' 7174072 YP_002436562.1 CDS DvMF_2151 NC_011769.1 2680580 2681272 R PFAM: lysine exporter (LYSE/YGGA); KEGG: rru:Rru_A2130 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(2680580..2681272) Desulfovibrio vulgaris str. 'Miyazaki F' 7174073 YP_002436563.1 CDS DvMF_2152 NC_011769.1 2681821 2682255 D PFAM: thioesterase superfamily protein; KEGG: rci:LRC474 phenylacetic acid degradation protein; thioesterase superfamily protein 2681821..2682255 Desulfovibrio vulgaris str. 'Miyazaki F' 7174074 YP_002436564.1 CDS DvMF_2153 NC_011769.1 2682313 2684127 D KEGG: dde:Dde_1552 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: ATPase AAA; Fis family transcriptional regulator 2682313..2684127 Desulfovibrio vulgaris str. 'Miyazaki F' 7174075 YP_002436565.1 CDS DvMF_2154 NC_011769.1 2684493 2685608 D TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dde:Dde_1553 L-alanine dehydrogenase; alanine dehydrogenase 2684493..2685608 Desulfovibrio vulgaris str. 'Miyazaki F' 7174076 YP_002436566.1 CDS DvMF_2155 NC_011769.1 2685836 2687143 R PFAM: ABC transporter; KEGG: sfu:Sfum_2393 ABC-2 type transporter; ABC transporter complement(2685836..2687143) Desulfovibrio vulgaris str. 'Miyazaki F' 7174077 YP_002436567.1 CDS DvMF_2156 NC_011769.1 2687153 2690473 R PFAM: ABC transporter; ABC-2 type transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_2391 ABC transporter; ABC transporter complement(2687153..2690473) Desulfovibrio vulgaris str. 'Miyazaki F' 7174078 YP_002436568.1 CDS DvMF_2157 NC_011769.1 2690470 2691543 R PFAM: secretion protein HlyD; KEGG: rpc:RPC_3037 secretion protein HlyD; secretion protein HlyD complement(2690470..2691543) Desulfovibrio vulgaris str. 'Miyazaki F' 7174079 YP_002436569.1 CDS DvMF_2158 NC_011769.1 2691680 2692414 D PFAM: regulatory protein TetR; transcriptional regulator TetR; KEGG: pfl:PFL_5951 TetR family transcriptional regulator; TetR family transcriptional regulator 2691680..2692414 Desulfovibrio vulgaris str. 'Miyazaki F' 7174080 YP_002436570.1 CDS DvMF_2159 NC_011769.1 2692492 2694081 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_2809 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system outer membrane lipoprotein 2692492..2694081 Desulfovibrio vulgaris str. 'Miyazaki F' 7174081 YP_002436571.1 CDS DvMF_2160 NC_011769.1 2694278 2694454 D hypothetical protein 2694278..2694454 Desulfovibrio vulgaris str. 'Miyazaki F' 7174082 YP_002436572.1 CDS DvMF_2161 NC_011769.1 2694597 2695127 R PFAM: regulatory protein MarR; KEGG: psp:PSPPH_1519 MarR family transcriptional regulator; MarR family transcriptional regulator complement(2694597..2695127) Desulfovibrio vulgaris str. 'Miyazaki F' 7174083 YP_002436573.1 CDS DvMF_2162 NC_011769.1 2695124 2696593 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cvi:CV_0433 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein complement(2695124..2696593) Desulfovibrio vulgaris str. 'Miyazaki F' 7174084 YP_002436574.1 CDS DvMF_2163 NC_011769.1 2696715 2699951 R TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cvi:CV_0434 acriflavin resistance protein D; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(2696715..2699951) Desulfovibrio vulgaris str. 'Miyazaki F' 7174085 YP_002436575.1 CDS DvMF_2164 NC_011769.1 2699976 2701193 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: cvi:CV_0435 multidrug efflux membrane permease; RND family efflux transporter MFP subunit complement(2699976..2701193) Desulfovibrio vulgaris str. 'Miyazaki F' 7174086 YP_002436576.1 CDS DvMF_2165 NC_011769.1 2701562 2702353 R PFAM: regulatory protein TetR; transcriptional regulator TetR; KEGG: sfu:Sfum_3173 TetR family transcriptional regulator; TetR family transcriptional regulator complement(2701562..2702353) Desulfovibrio vulgaris str. 'Miyazaki F' 7174087 YP_002436577.1 CDS DvMF_2166 NC_011769.1 2702663 2703508 R PFAM: protein of unknown function DUF169; KEGG: glo:Glov_1444 protein of unknown function DUF169; hypothetical protein complement(2702663..2703508) Desulfovibrio vulgaris str. 'Miyazaki F' 7174088 YP_002436578.1 CDS DvMF_2167 NC_011769.1 2703630 2704115 R PFAM: regulatory protein MarR; KEGG: dsy:DSY3432 hypothetical protein; MarR family transcriptional regulator complement(2703630..2704115) Desulfovibrio vulgaris str. 'Miyazaki F' 7174089 YP_002436579.1 CDS DvMF_2168 NC_011769.1 2704320 2704748 R PFAM: zinc finger DksA/TraR C4-type; KEGG: dde:Dde_3660 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator complement(2704320..2704748) Desulfovibrio vulgaris str. 'Miyazaki F' 7174090 YP_002436580.1 CDS DvMF_2169 NC_011769.1 2705195 2707183 D PFAM: phospholipid/glycerol acyltransferase; KEGG: dde:Dde_3661 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2705195..2707183 Desulfovibrio vulgaris str. 'Miyazaki F' 7174091 YP_002436581.1 CDS DvMF_2170 NC_011769.1 2707514 2707936 D PFAM: protein of unknown function DUF523; KEGG: dde:Dde_3662 hypothetical protein; hypothetical protein 2707514..2707936 Desulfovibrio vulgaris str. 'Miyazaki F' 7174092 YP_002436582.1 CDS DvMF_2171 NC_011769.1 2709455 2709613 D KEGG: dde:Dde_3664 hypothetical protein; hypothetical protein 2709455..2709613 Desulfovibrio vulgaris str. 'Miyazaki F' 7174093 YP_002436583.1 CDS DvMF_2172 NC_011769.1 2709762 2710565 R PFAM: DSBA oxidoreductase; KEGG: dde:Dde_0163 DsbA-like thioredoxin domain-containing protein; DSBA oxidoreductase complement(2709762..2710565) Desulfovibrio vulgaris str. 'Miyazaki F' 7174094 YP_002436584.1 CDS DvMF_2173 NC_011769.1 2710934 2711260 R PFAM: branched-chain amino acid transport; KEGG: dde:Dde_0159 hypothetical protein; branched-chain amino acid transport complement(2710934..2711260) Desulfovibrio vulgaris str. 'Miyazaki F' 7174095 YP_002436585.1 CDS DvMF_2174 NC_011769.1 2711285 2712133 R PFAM: AzlC family protein; KEGG: dde:Dde_0158 AzlC family protein; AzlC family protein complement(2711285..2712133) Desulfovibrio vulgaris str. 'Miyazaki F' 7174096 YP_002436586.1 CDS DvMF_2175 NC_011769.1 2712433 2713929 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dde:Dde_0157 GntR family transcriptional regulator; GntR family transcriptional regulator 2712433..2713929 Desulfovibrio vulgaris str. 'Miyazaki F' 7174097 YP_002436587.1 CDS DvMF_2176 NC_011769.1 2714037 2714462 R KEGG: dde:Dde_0093 hypothetical protein; hypothetical protein complement(2714037..2714462) Desulfovibrio vulgaris str. 'Miyazaki F' 7174098 YP_002436588.1 CDS DvMF_2177 NC_011769.1 2714835 2716832 R PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: dde:Dde_0092 hydantoinase/oxoprolinase family protein; hydantoinase/oxoprolinase complement(2714835..2716832) Desulfovibrio vulgaris str. 'Miyazaki F' 7174099 YP_002436589.1 CDS DvMF_2178 NC_011769.1 2717075 2717440 R TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: asa:ASA_3792 chaperone CsaA; export-related chaperone CsaA complement(2717075..2717440) Desulfovibrio vulgaris str. 'Miyazaki F' 7174100 YP_002436590.1 CDS DvMF_2179 NC_011769.1 2717625 2718539 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sfu:Sfum_1190 methyltransferase type 11; methyltransferase type 11 complement(2717625..2718539) Desulfovibrio vulgaris str. 'Miyazaki F' 7174101 YP_002436591.1 CDS DvMF_2180 NC_011769.1 2718931 2720124 R PFAM: beta-lactamase; flavodoxin/nitric oxide synthase; KEGG: ppd:Ppro_3699 hypothetical protein; metallo-beta-lactamase/flavodoxin domain-containing protein complement(2718931..2720124) Desulfovibrio vulgaris str. 'Miyazaki F' 7174102 YP_002436592.1 CDS DvMF_2181 NC_011769.1 2720693 2721304 R PFAM: heat shock protein Hsp20; KEGG: rca:Rcas_4342 heat shock protein HSP20; heat shock protein Hsp20 complement(2720693..2721304) Desulfovibrio vulgaris str. 'Miyazaki F' 7174103 YP_002436593.1 CDS DvMF_2182 NC_011769.1 2721645 2723423 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2721645..2723423) Desulfovibrio vulgaris str. 'Miyazaki F' 7174104 YP_002436594.1 CDS DvMF_2183 NC_011769.1 2723923 2726118 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 2723923..2726118 Desulfovibrio vulgaris str. 'Miyazaki F' 7174105 YP_002436595.1 CDS DvMF_2184 NC_011769.1 2726347 2727660 D KEGG: mgr:MGG_14155 hypothetical protein; hypothetical protein 2726347..2727660 Desulfovibrio vulgaris str. 'Miyazaki F' 7174106 YP_002436596.1 CDS DvMF_2185 NC_011769.1 2727957 2728697 D PFAM: ThiJ/PfpI domain protein; KEGG: bbr:BB3066 hypothetical protein; ThiJ/PfpI domain-containing protein 2727957..2728697 Desulfovibrio vulgaris str. 'Miyazaki F' 7174107 YP_002436597.1 CDS DvMF_2186 NC_011769.1 2728943 2730445 R PFAM: Dual specificity protein phosphatase; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase; dual specificity protein phosphatase complement(2728943..2730445) Desulfovibrio vulgaris str. 'Miyazaki F' 7174108 YP_002436598.1 CDS DvMF_2187 NC_011769.1 2730442 2733027 R PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: dde:Dde_0604 pyruvate,water dikinase; pyruvate phosphate dikinase complement(2730442..2733027) Desulfovibrio vulgaris str. 'Miyazaki F' 7174109 YP_002436599.1 CDS DvMF_2188 NC_011769.1 2733146 2733505 R PFAM: response regulator receiver; KEGG: dde:Dde_0603 response regulator receiver domain-containing protein; response regulator receiver protein complement(2733146..2733505) Desulfovibrio vulgaris str. 'Miyazaki F' 7174110 YP_002436600.1 CDS DvMF_2189 NC_011769.1 2733764 2735944 R KEGG: dde:Dde_0602 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(2733764..2735944) Desulfovibrio vulgaris str. 'Miyazaki F' 7174111 YP_002436601.1 CDS DvMF_2190 NC_011769.1 2735941 2736885 R TIGRFAM: phosphonate ABC transporter periplasmic phosphonate-binding protein; KEGG: dde:Dde_0601 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(2735941..2736885) Desulfovibrio vulgaris str. 'Miyazaki F' 7174112 YP_002436602.1 CDS DvMF_2191 NC_011769.1 2736913 2737626 R KEGG: dde:Dde_0600 hypothetical protein; hypothetical protein complement(2736913..2737626) Desulfovibrio vulgaris str. 'Miyazaki F' 7174113 YP_002436603.1 CDS DvMF_2192 NC_011769.1 2737714 2738856 R PFAM: protein of unknown function DUF81; KEGG: dde:Dde_0598 hypothetical protein; hypothetical protein complement(2737714..2738856) Desulfovibrio vulgaris str. 'Miyazaki F' 7174114 YP_002436604.1 CDS DvMF_2193 NC_011769.1 2738954 2739730 R PFAM: protein of unknown function DUF169; KEGG: dde:Dde_0597 hypothetical protein; hypothetical protein complement(2738954..2739730) Desulfovibrio vulgaris str. 'Miyazaki F' 7174115 YP_002436605.1 CDS DvMF_2194 NC_011769.1 2740607 2741704 D PFAM: permease; KEGG: hau:Haur_1694 permease; permease 2740607..2741704 Desulfovibrio vulgaris str. 'Miyazaki F' 7174116 YP_002436606.1 CDS DvMF_2195 NC_011769.1 2741701 2742951 D KEGG: mmc:Mmcs_2996 hypothetical protein; hypothetical protein 2741701..2742951 Desulfovibrio vulgaris str. 'Miyazaki F' 7174117 YP_002436607.1 CDS DvMF_2196 NC_011769.1 2743136 2745964 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase; KEGG: dde:Dde_3604 oxidoreductase; FAD linked oxidase complement(2743136..2745964) Desulfovibrio vulgaris str. 'Miyazaki F' 7174118 YP_002436608.1 CDS DvMF_2197 NC_011769.1 2746418 2747458 R PFAM: protein of unknown function DUF805; KEGG: chu:CHU_1014 cytochrome; hypothetical protein complement(2746418..2747458) Desulfovibrio vulgaris str. 'Miyazaki F' 7174119 YP_002436609.1 CDS DvMF_2198 NC_011769.1 2747636 2751232 R PFAM: helicase; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: dde:Dde_3603 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(2747636..2751232) Desulfovibrio vulgaris str. 'Miyazaki F' 7174120 YP_002436610.1 CDS DvMF_2199 NC_011769.1 2751516 2752109 R KEGG: cel:E03H12.5 E03H12.5; hypothetical protein complement(2751516..2752109) Desulfovibrio vulgaris str. 'Miyazaki F' 7174121 YP_002436611.1 CDS DvMF_2200 NC_011769.1 2752398 2753777 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: lip:LI0877 response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; Fis family transcriptional regulator complement(2752398..2753777) Desulfovibrio vulgaris str. 'Miyazaki F' 7174122 YP_002436612.1 CDS DvMF_2201 NC_011769.1 2754115 2755557 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_3598 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2754115..2755557) Desulfovibrio vulgaris str. 'Miyazaki F' 7174123 YP_002436613.1 CDS DvMF_2202 NC_011769.1 2755561 2756922 R PFAM: phosphoglucose isomerase (PGI); KEGG: dde:Dde_3597 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase complement(2755561..2756922) Desulfovibrio vulgaris str. 'Miyazaki F' 7174124 YP_002436614.1 CDS DvMF_2203 NC_011769.1 2756925 2757218 R hypothetical protein complement(2756925..2757218) Desulfovibrio vulgaris str. 'Miyazaki F' 7174125 YP_002436615.1 CDS DvMF_2204 NC_011769.1 2757407 2758579 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: dde:Dde_3596 L-aspartate aminotransferase; class I and II aminotransferase complement(2757407..2758579) Desulfovibrio vulgaris str. 'Miyazaki F' 7174126 YP_002436616.1 CDS DvMF_2205 NC_011769.1 2758864 2759802 D PFAM: sugar fermentation stimulation protein; KEGG: dde:Dde_3594 sugar fermentation stimulation protein; sugar fermentation stimulation protein 2758864..2759802 Desulfovibrio vulgaris str. 'Miyazaki F' 7174127 YP_002436617.1 CDS DvMF_2206 NC_011769.1 2759859 2760134 R KEGG: dde:Dde_3593 hypothetical protein; hypothetical protein complement(2759859..2760134) Desulfovibrio vulgaris str. 'Miyazaki F' 7174128 YP_002436618.1 CDS era NC_011769.1 2761110 2762033 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2761110..2762033 Desulfovibrio vulgaris str. 'Miyazaki F' 7174129 YP_002436619.1 CDS DvMF_2208 NC_011769.1 2762163 2762981 D PFAM: alanine racemase domain protein; KEGG: dde:Dde_3590 hypothetical protein; alanine racemase 2762163..2762981 Desulfovibrio vulgaris str. 'Miyazaki F' 7174130 YP_002436620.1 CDS DvMF_2209 NC_011769.1 2763274 2764032 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel 2763274..2764032 Desulfovibrio vulgaris str. 'Miyazaki F' 7174131 YP_002436621.1 CDS DvMF_2210 NC_011769.1 2764057 2764980 D PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3588 OmpA family protein; OmpA/MotB domain-containing protein 2764057..2764980 Desulfovibrio vulgaris str. 'Miyazaki F' 7174132 YP_002436622.1 CDS DvMF_2211 NC_011769.1 2764982 2765917 D PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3587 chemotaxis protein MotB; OmpA/MotB domain-containing protein 2764982..2765917 Desulfovibrio vulgaris str. 'Miyazaki F' 7174133 YP_002436623.1 CDS DvMF_2212 NC_011769.1 2765999 2766514 D PFAM: flagellar basal body-associated protein FliL; KEGG: dde:Dde_3586 flagellar protein FliL; flagellar basal body-associated protein FliL 2765999..2766514 Desulfovibrio vulgaris str. 'Miyazaki F' 7174134 YP_002436624.1 CDS DvMF_2213 NC_011769.1 2766541 2767083 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dde:Dde_3585 surface presentation of antigens (SpoA) protein; flagellar motor switch protein FliN 2766541..2767083 Desulfovibrio vulgaris str. 'Miyazaki F' 7174135 YP_002436625.1 CDS DvMF_2214 NC_011769.1 2767187 2767762 D PFAM: flagellar biosynthesis protein FliO; KEGG: dde:Dde_3584 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein FliO 2767187..2767762 Desulfovibrio vulgaris str. 'Miyazaki F' 7174136 YP_002436626.1 CDS fliP NC_011769.1 2767902 2768783 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2767902..2768783 Desulfovibrio vulgaris str. 'Miyazaki F' 7174137 YP_002436627.1 CDS DvMF_2216 NC_011769.1 2768797 2769066 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: dde:Dde_3582 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 2768797..2769066 Desulfovibrio vulgaris str. 'Miyazaki F' 7174138 YP_002436628.1 CDS DvMF_2217 NC_011769.1 2769246 2770280 R PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dde:Dde_3581 RNA methyltransferase TrmH, group 3; tRNA/rRNA methyltransferase SpoU complement(2769246..2770280) Desulfovibrio vulgaris str. 'Miyazaki F' 7174139 YP_002436629.1 CDS DvMF_2218 NC_011769.1 2770936 2772792 D PFAM: peptidoglycan-binding LysM; lytic transglycosylase catalytic; KEGG: dde:Dde_3580 peptidoglycan-binding LysM; lytic transglycosylase 2770936..2772792 Desulfovibrio vulgaris str. 'Miyazaki F' 7174140 YP_002436630.1 CDS DvMF_2219 NC_011769.1 2779206 2779823 R PFAM: nuclease (SNase domain protein); KEGG: dol:Dole_2932 nuclease; nuclease complement(2779206..2779823) Desulfovibrio vulgaris str. 'Miyazaki F' 7174146 YP_002436631.1 CDS DvMF_2220 NC_011769.1 2779909 2780553 R PFAM: lipolytic protein G-D-S-L family; KEGG: dde:Dde_0413 acyl-CoA thioesterase precursor; G-D-S-L family lipolytic protein complement(2779909..2780553) Desulfovibrio vulgaris str. 'Miyazaki F' 7174147 YP_002436632.1 CDS DvMF_2221 NC_011769.1 2780732 2781490 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0412 ATPase; ABC transporter 2780732..2781490 Desulfovibrio vulgaris str. 'Miyazaki F' 7174148 YP_002436633.1 CDS DvMF_2222 NC_011769.1 2781487 2784294 D PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0411 hypothetical protein; hypothetical protein 2781487..2784294 Desulfovibrio vulgaris str. 'Miyazaki F' 7174149 YP_002436634.1 CDS DvMF_2223 NC_011769.1 2784558 2784920 R PFAM: diacylglycerol kinase; KEGG: har:HEAR0819 diacylglycerol kinase; diacylglycerol kinase complement(2784558..2784920) Desulfovibrio vulgaris str. 'Miyazaki F' 7174150 YP_002436635.1 CDS DvMF_2224 NC_011769.1 2785206 2786483 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2785206..2786483) Desulfovibrio vulgaris str. 'Miyazaki F' 7174152 YP_002436636.1 CDS DvMF_2225 NC_011769.1 2786930 2787349 R KEGG: dde:Dde_0197 hypothetical protein; hypothetical protein complement(2786930..2787349) Desulfovibrio vulgaris str. 'Miyazaki F' 7174153 YP_002436637.1 CDS DvMF_2226 NC_011769.1 2788005 2788403 R PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_0203 hypothetical protein; type IV pilus assembly PilZ complement(2788005..2788403) Desulfovibrio vulgaris str. 'Miyazaki F' 7174154 YP_002436638.1 CDS DvMF_2227 NC_011769.1 2788852 2789220 D PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_0204 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 2788852..2789220 Desulfovibrio vulgaris str. 'Miyazaki F' 7174155 YP_002436639.1 CDS DvMF_2228 NC_011769.1 2789282 2789779 D PFAM: SEC-C motif domain protein; KEGG: dde:Dde_0205 SecC motif-containing protein; SEC-C motif domain protein 2789282..2789779 Desulfovibrio vulgaris str. 'Miyazaki F' 7174156 YP_002436640.1 CDS DvMF_2229 NC_011769.1 2790103 2791221 D KEGG: dde:Dde_0075 hypothetical protein; hypothetical protein 2790103..2791221 Desulfovibrio vulgaris str. 'Miyazaki F' 7174157 YP_002436641.1 CDS DvMF_2230 NC_011769.1 2791493 2792314 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dde:Dde_0074 TatD-related deoxyribonuclease; TatD family hydrolase 2791493..2792314 Desulfovibrio vulgaris str. 'Miyazaki F' 7174158 YP_002436642.1 CDS DvMF_2231 NC_011769.1 2792470 2792892 D PFAM: protein of unknown function DUF309; KEGG: gsu:GSU1664 hypothetical protein; hypothetical protein 2792470..2792892 Desulfovibrio vulgaris str. 'Miyazaki F' 7174159 YP_002436643.1 CDS DvMF_2232 NC_011769.1 2792995 2793846 R KEGG: dde:Dde_3029 carbon monoxide dehydrogenase accessory protein CooC; carbon monoxide dehydrogenase accessory protein CooC complement(2792995..2793846) Desulfovibrio vulgaris str. 'Miyazaki F' 7174160 YP_002436644.1 CDS DvMF_2233 NC_011769.1 2794183 2796072 R KEGG: dde:Dde_3028 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; carbon-monoxide dehydrogenase, catalytic subunit complement(2794183..2796072) Desulfovibrio vulgaris str. 'Miyazaki F' 7174161 YP_002436645.1 CDS DvMF_2234 NC_011769.1 2796421 2797263 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dde:Dde_3027 Crp/FNR family transcriptional regulator; Crp/Fnr family transcriptional regulator complement(2796421..2797263) Desulfovibrio vulgaris str. 'Miyazaki F' 7174162 YP_002436646.1 CDS DvMF_2235 NC_011769.1 2797491 2798543 R KEGG: dde:Dde_0076 translation initiation factor 2B subunit I; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family complement(2797491..2798543) Desulfovibrio vulgaris str. 'Miyazaki F' 7174163 YP_002436647.1 CDS DvMF_2236 NC_011769.1 2798940 2799539 R PFAM: isochorismatase hydrolase; KEGG: sfu:Sfum_3430 isochorismatase hydrolase; isochorismatase hydrolase complement(2798940..2799539) Desulfovibrio vulgaris str. 'Miyazaki F' 7174164 YP_002436648.1 CDS DvMF_2237 NC_011769.1 2800110 2801432 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2800110..2801432 Desulfovibrio vulgaris str. 'Miyazaki F' 7174165 YP_002436649.1 CDS DvMF_2238 NC_011769.1 2801642 2802142 R PFAM: Tir chaperone family protein; KEGG: eta:ETA_05380 potential ORFB-specific chaperone, encodes a homolog of virulence/avirulence effector proteins secreted via the type III pathway; Tir chaperone family protein complement(2801642..2802142) Desulfovibrio vulgaris str. 'Miyazaki F' 7174166 YP_002436650.1 CDS DvMF_2239 NC_011769.1 2802171 2805872 R hypothetical protein complement(2802171..2805872) Desulfovibrio vulgaris str. 'Miyazaki F' 7174167 YP_002436651.1 CDS DvMF_2240 NC_011769.1 2812227 2813327 R KEGG: hch:HCH_03629 hypothetical protein; hypothetical protein complement(2812227..2813327) Desulfovibrio vulgaris str. 'Miyazaki F' 7174173 YP_002436652.1 CDS DvMF_2241 NC_011769.1 2813881 2815104 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transporter; xanthine/uracil/vitamin C permease; KEGG: bcm:Bcenmc03_2357 benzoate transporter; benzoate transporter 2813881..2815104 Desulfovibrio vulgaris str. 'Miyazaki F' 7174174 YP_002436653.1 CDS DvMF_2242 NC_011769.1 2815394 2816470 R PFAM: metal-dependent hydrolase HDOD; KEGG: gsu:GSU2576 HD domain-containing protein; signal transduction protein complement(2815394..2816470) Desulfovibrio vulgaris str. 'Miyazaki F' 7174175 YP_002436654.1 CDS DvMF_2243 NC_011769.1 2816990 2818678 R PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0193 AMP-binding enzyme family protein; AMP-dependent synthetase and ligase complement(2816990..2818678) Desulfovibrio vulgaris str. 'Miyazaki F' 7174176 YP_002436655.1 CDS DvMF_2244 NC_011769.1 2819104 2819409 D PFAM: stress responsive alpha-beta barrel domain protein; KEGG: dde:Dde_0194 hypothetical protein; stress responsive alpha-beta barrel domain-containing protein 2819104..2819409 Desulfovibrio vulgaris str. 'Miyazaki F' 7174177 YP_002436656.1 CDS DvMF_2245 NC_011769.1 2819501 2820139 R PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: deh:cbdb_A1379 SAM-dependent methyltransferase; methyltransferase type 11 complement(2819501..2820139) Desulfovibrio vulgaris str. 'Miyazaki F' 7174178 YP_002436657.1 CDS DvMF_2246 NC_011769.1 2820336 2821301 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gur:Gura_1198 LysR family transcriptional regulator; LysR family transcriptional regulator 2820336..2821301 Desulfovibrio vulgaris str. 'Miyazaki F' 7174179 YP_002436658.1 CDS DvMF_2247 NC_011769.1 2821288 2821935 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: dde:Dde_1696 hemolysin III family channel protein; hemolysin III family channel protein complement(2821288..2821935) Desulfovibrio vulgaris str. 'Miyazaki F' 7174180 YP_002436659.1 CDS DvMF_2248 NC_011769.1 2822247 2823641 R KEGG: dde:Dde_0560 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle-docking protein FtsY complement(2822247..2823641) Desulfovibrio vulgaris str. 'Miyazaki F' 7174181 YP_002436660.1 CDS DvMF_2249 NC_011769.1 2824044 2826359 D KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 2824044..2826359 Desulfovibrio vulgaris str. 'Miyazaki F' 7174182 YP_002436661.1 CDS DvMF_2250 NC_011769.1 2826744 2827967 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dde:Dde_0339 OMPP1/FadL/TodX family outer membrane protein; aromatic hydrocarbon degradation membrane protein 2826744..2827967 Desulfovibrio vulgaris str. 'Miyazaki F' 7174183 YP_002436662.1 CDS DvMF_2251 NC_011769.1 2828282 2828776 R KEGG: dde:Dde_0340 hypothetical protein; hypothetical protein complement(2828282..2828776) Desulfovibrio vulgaris str. 'Miyazaki F' 7174184 YP_002436663.1 CDS DvMF_2252 NC_011769.1 2828773 2831745 R PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dde:Dde_0341 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(2828773..2831745) Desulfovibrio vulgaris str. 'Miyazaki F' 7174185 YP_002436664.1 CDS DvMF_2253 NC_011769.1 2832064 2832801 R PFAM: precorrin-8X methylmutase CbiC/CobH; KEGG: dde:Dde_0342 precorrin-8X methylmutase; precorrin-8X methylmutase CbiC/CobH complement(2832064..2832801) Desulfovibrio vulgaris str. 'Miyazaki F' 7174186 YP_002436665.1 CDS DvMF_2254 NC_011769.1 2832792 2834408 R TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dde:Dde_0343 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing); cobyrinic acid a,c-diamide synthase complement(2832792..2834408) Desulfovibrio vulgaris str. 'Miyazaki F' 7174187 YP_002436666.1 CDS DvMF_2255 NC_011769.1 2834480 2834737 R KEGG: dde:Dde_0344 hypothetical protein; hypothetical protein complement(2834480..2834737) Desulfovibrio vulgaris str. 'Miyazaki F' 7174188 YP_002436667.1 CDS DvMF_2256 NC_011769.1 2835164 2835556 D KEGG: dde:Dde_0346 MucR family transcriptional regulator; MucR family transcriptional regulator 2835164..2835556 Desulfovibrio vulgaris str. 'Miyazaki F' 7174189 YP_002436668.1 CDS DvMF_2257 NC_011769.1 2835882 2837693 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_0347 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2835882..2837693 Desulfovibrio vulgaris str. 'Miyazaki F' 7174190 YP_002436669.1 CDS DvMF_2258 NC_011769.1 2837899 2838387 D KEGG: dde:Dde_0206 hypothetical protein; hypothetical protein 2837899..2838387 Desulfovibrio vulgaris str. 'Miyazaki F' 7174191 YP_002436670.1 CDS DvMF_2259 NC_011769.1 2838525 2839349 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: glo:Glov_1037 ABC transporter; ABC transporter complement(2838525..2839349) Desulfovibrio vulgaris str. 'Miyazaki F' 7174192 YP_002436671.1 CDS DvMF_2260 NC_011769.1 2839346 2840125 R PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1756 hypothetical protein; cobalamin synthesis protein P47K complement(2839346..2840125) Desulfovibrio vulgaris str. 'Miyazaki F' 7174193 YP_002436672.1 CDS DvMF_2261 NC_011769.1 2840113 2841198 R KEGG: rpa:RPA1389 hypothetical protein; hypothetical protein complement(2840113..2841198) Desulfovibrio vulgaris str. 'Miyazaki F' 7174194 YP_002436673.1 CDS DvMF_2262 NC_011769.1 2841338 2842216 R KEGG: dde:Dde_3246 methyl-accepting chemotaxis sensory transducer; hypothetical protein complement(2841338..2842216) Desulfovibrio vulgaris str. 'Miyazaki F' 7174195 YP_002436674.1 CDS engA NC_011769.1 2842497 2844017 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2842497..2844017) Desulfovibrio vulgaris str. 'Miyazaki F' 7174196 YP_002436675.1 CDS DvMF_2264 NC_011769.1 2844568 2845554 D TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_0119 excisionase/Xis, DNA-binding; excisionase family DNA binding domain-containing protein 2844568..2845554 Desulfovibrio vulgaris str. 'Miyazaki F' 7174197 YP_002436676.1 CDS DvMF_2265 NC_011769.1 2845697 2846587 R PFAM: regulatory protein MarR; KEGG: ckl:CKL_0340 transcriptional regulator; MarR family transcriptional regulator complement(2845697..2846587) Desulfovibrio vulgaris str. 'Miyazaki F' 7174198 YP_002436677.1 CDS DvMF_2266 NC_011769.1 2846772 2848310 R KEGG: dde:Dde_0063 lipoprotein; lipoprotein complement(2846772..2848310) Desulfovibrio vulgaris str. 'Miyazaki F' 7174199 YP_002436678.1 CDS DvMF_2267 NC_011769.1 2848310 2849344 R PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin complement(2848310..2849344) Desulfovibrio vulgaris str. 'Miyazaki F' 7174200 YP_002436679.1 CDS DvMF_2268 NC_011769.1 2850088 2851011 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2850088..2851011 Desulfovibrio vulgaris str. 'Miyazaki F' 7174201 YP_002436680.1 CDS DvMF_2269 NC_011769.1 2851219 2853285 D KEGG: dde:Dde_0066 DNA polymerase III tau subunit; TIGRFAM: DNA polymerase III subunits gamma/tau; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA; DNA polymerase III subunits gamma/tau 2851219..2853285 Desulfovibrio vulgaris str. 'Miyazaki F' 7174202 YP_002436681.1 CDS DvMF_2270 NC_011769.1 2853304 2853615 D PFAM: conserved hypothetical protein; KEGG: dde:Dde_0067 hypothetical protein; hypothetical protein 2853304..2853615 Desulfovibrio vulgaris str. 'Miyazaki F' 7174203 YP_002436682.1 CDS DvMF_2271 NC_011769.1 2853744 2854349 D TIGRFAM: recombination protein RecR; PFAM: Zinc finger C4-type, RecR; KEGG: dde:Dde_0068 DNA replication and repair protein RecR; recombination protein RecR 2853744..2854349 Desulfovibrio vulgaris str. 'Miyazaki F' 7174204 YP_002436683.1 CDS DvMF_2272 NC_011769.1 2854675 2855430 R KEGG: dde:Dde_0372 hypothetical protein; hypothetical protein complement(2854675..2855430) Desulfovibrio vulgaris str. 'Miyazaki F' 7174205 YP_002436684.1 CDS DvMF_2273 NC_011769.1 2856128 2859799 D KEGG: dde:Dde_0370 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 2856128..2859799 Desulfovibrio vulgaris str. 'Miyazaki F' 7174206 YP_002436685.1 CDS DvMF_2274 NC_011769.1 2859889 2861364 R PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dde:Dde_0367 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase complement(2859889..2861364) Desulfovibrio vulgaris str. 'Miyazaki F' 7174207 YP_002436686.1 CDS DvMF_2275 NC_011769.1 2861444 2862181 R SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_0365 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(2861444..2862181) Desulfovibrio vulgaris str. 'Miyazaki F' 7174208 YP_002436687.1 CDS DvMF_2276 NC_011769.1 2862570 2863667 D PFAM: hydrogenase formation HypD protein; KEGG: dde:Dde_0364 hydrogenase expression/formation protein HypD; hydrogenase formation HypD protein 2862570..2863667 Desulfovibrio vulgaris str. 'Miyazaki F' 7174209 YP_002436688.1 CDS DvMF_2277 NC_011769.1 2863672 2864697 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dde:Dde_0363 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2863672..2864697 Desulfovibrio vulgaris str. 'Miyazaki F' 7174210 YP_002436689.1 CDS DvMF_2279 NC_011769.1 2866612 2867733 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0362 sugar transferase involved in lipopolysaccharide synthesis-like; group 1 glycosyl transferase complement(2866612..2867733) Desulfovibrio vulgaris str. 'Miyazaki F' 7174212 YP_002436690.1 CDS DvMF_2280 NC_011769.1 2868302 2869330 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: dde:Dde_0358 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 2868302..2869330 Desulfovibrio vulgaris str. 'Miyazaki F' 7174213 YP_002436691.1 CDS DvMF_2281 NC_011769.1 2869587 2869955 D PFAM: regulatory protein ArsR; KEGG: dde:Dde_3721 ArsR family transcriptional regulator; ArsR family transcriptional regulator 2869587..2869955 Desulfovibrio vulgaris str. 'Miyazaki F' 7174214 YP_002436692.1 CDS DvMF_2282 NC_011769.1 2870591 2871583 D PFAM: permease; KEGG: dde:Dde_3722 permease-like; permease 2870591..2871583 Desulfovibrio vulgaris str. 'Miyazaki F' 7174215 YP_002436693.1 CDS DvMF_2283 NC_011769.1 2871815 2872375 R PFAM: hypothetical protein; KEGG: dde:Dde_0357 hypothetical protein; hypothetical protein complement(2871815..2872375) Desulfovibrio vulgaris str. 'Miyazaki F' 7174216 YP_002436694.1 CDS flgB NC_011769.1 2873035 2873445 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 2873035..2873445 Desulfovibrio vulgaris str. 'Miyazaki F' 7174217 YP_002436695.1 CDS DvMF_2285 NC_011769.1 2873445 2873882 D TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0355 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 2873445..2873882 Desulfovibrio vulgaris str. 'Miyazaki F' 7174218 YP_002436696.1 CDS DvMF_2286 NC_011769.1 2873902 2874234 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: lip:LI0858 flagellar hook-basal body protein; flagellar hook-basal body complex subunit FliE 2873902..2874234 Desulfovibrio vulgaris str. 'Miyazaki F' 7174219 YP_002436697.1 CDS DvMF_2287 NC_011769.1 2874551 2876170 D TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; flagellar M-ring domain protein; KEGG: dde:Dde_0353 flagellar M-ring protein FliF; flagellar M-ring protein FliF 2874551..2876170 Desulfovibrio vulgaris str. 'Miyazaki F' 7174220 YP_002436698.1 CDS DvMF_2288 NC_011769.1 2876139 2877155 D PFAM: flagellar motor switch protein FliG; KEGG: dde:Dde_0352 flagellar motor switch protein FliG; flagellar motor switch protein FliG 2876139..2877155 Desulfovibrio vulgaris str. 'Miyazaki F' 7174221 YP_002436699.1 CDS DvMF_2289 NC_011769.1 2877142 2877906 D KEGG: dde:Dde_0351 flagellar assembly protein FliH; flagellar assembly protein FliH 2877142..2877906 Desulfovibrio vulgaris str. 'Miyazaki F' 7174222 YP_002436700.1 CDS DvMF_2290 NC_011769.1 2877968 2879374 D KEGG: dde:Dde_0350 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; SMART: ATPase AAA; flagellar protein export ATPase FliI 2877968..2879374 Desulfovibrio vulgaris str. 'Miyazaki F' 7174223 YP_002436701.1 CDS DvMF_2291 NC_011769.1 2879624 2880376 R PFAM: phosphoesterase PA-phosphatase related; KEGG: dde:Dde_0373 phosphoesterase, PA-phosphatase related; PA-phosphatase like phosphoesterase complement(2879624..2880376) Desulfovibrio vulgaris str. 'Miyazaki F' 7174224 YP_002436702.1 CDS DvMF_2292 NC_011769.1 2880398 2881300 R PFAM: peptidase M23; KEGG: dde:Dde_0243 M24/M37 family peptidase; peptidase M23 complement(2880398..2881300) Desulfovibrio vulgaris str. 'Miyazaki F' 7174225 YP_002436703.1 CDS DvMF_2293 NC_011769.1 2881458 2882204 R PFAM: PP-loop domain protein; KEGG: dde:Dde_0244 hypothetical protein; PP-loop domain-containing protein complement(2881458..2882204) Desulfovibrio vulgaris str. 'Miyazaki F' 7174226 YP_002436704.1 CDS DvMF_2294 NC_011769.1 2882854 2883081 D TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; KEGG: dde:Dde_0247 DNA-directed RNA polymerase, omega subunit; DNA-directed RNA polymerase subunit omega 2882854..2883081 Desulfovibrio vulgaris str. 'Miyazaki F' 7174227 YP_002436705.1 CDS DvMF_2295 NC_011769.1 2883088 2884212 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 2883088..2884212 Desulfovibrio vulgaris str. 'Miyazaki F' 7174228 YP_002436706.1 CDS DvMF_2296 NC_011769.1 2884469 2885122 D KEGG: maq:Maqu_2657 filamentation induced by cAMP protein Fic; hypothetical protein 2884469..2885122 Desulfovibrio vulgaris str. 'Miyazaki F' 7174229 YP_002436707.1 CDS DvMF_2297 NC_011769.1 2885162 2885677 D KEGG: mhu:Mhun_0543 hypothetical protein; hypothetical protein 2885162..2885677 Desulfovibrio vulgaris str. 'Miyazaki F' 7174230 YP_002436708.1 CDS DvMF_2298 NC_011769.1 2886064 2887641 D PFAM: outer membrane efflux protein; KEGG: ppd:Ppro_1440 outer membrane efflux protein; outer membrane efflux protein 2886064..2887641 Desulfovibrio vulgaris str. 'Miyazaki F' 7174231 YP_002436709.1 CDS DvMF_2300 NC_011769.1 2888613 2891423 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; hypothetical protein; KEGG: mgm:Mmc1_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2888613..2891423 Desulfovibrio vulgaris str. 'Miyazaki F' 7174233 YP_002436710.1 CDS DvMF_2301 NC_011769.1 2891919 2892410 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dde:Dde_0249 GTP cyclohydrolase subunit MoaC; molybdenum cofactor biosynthesis protein C 2891919..2892410 Desulfovibrio vulgaris str. 'Miyazaki F' 7174234 YP_002436711.1 CDS DvMF_2302 NC_011769.1 2892509 2893186 R PFAM: dimethylmenaquinone methyltransferase; KEGG: rsq:Rsph17025_3165 hypothetical protein; dimethylmenaquinone methyltransferase complement(2892509..2893186) Desulfovibrio vulgaris str. 'Miyazaki F' 7174235 YP_002436712.1 CDS DvMF_2303 NC_011769.1 2893323 2894333 R KEGG: cak:Caul_3283 esterase/lipase-like protein; esterase/lipase-like protein complement(2893323..2894333) Desulfovibrio vulgaris str. 'Miyazaki F' 7174236 YP_002436713.1 CDS DvMF_2304 NC_011769.1 2894495 2895274 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(2894495..2895274) Desulfovibrio vulgaris str. 'Miyazaki F' 7174237 YP_002436714.1 CDS hisH NC_011769.1 2895267 2895905 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(2895267..2895905) Desulfovibrio vulgaris str. 'Miyazaki F' 7174238 YP_002436715.1 CDS DvMF_2306 NC_011769.1 2896618 2899854 D TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain oligomerisation; carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: dde:Dde_0333 carbamoyl-phosphate synthase large subunit; carbamoyl-phosphate synthase large subunit 2896618..2899854 Desulfovibrio vulgaris str. 'Miyazaki F' 7174239 YP_002436716.1 CDS DvMF_2307 NC_011769.1 2900037 2901440 D TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: dde:Dde_0334 amidophosphoribosyltransferase; amidophosphoribosyltransferase 2900037..2901440 Desulfovibrio vulgaris str. 'Miyazaki F' 7174240 YP_002436717.1 CDS DvMF_2308 NC_011769.1 2901848 2902849 D KEGG: dde:Dde_0335 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 2901848..2902849 Desulfovibrio vulgaris str. 'Miyazaki F' 7174241 YP_002436718.1 CDS DvMF_2309 NC_011769.1 2902925 2903452 D PFAM: thioesterase superfamily protein; KEGG: dde:Dde_0336 thioesterase family protein; thioesterase superfamily protein 2902925..2903452 Desulfovibrio vulgaris str. 'Miyazaki F' 7174242 YP_002436719.1 CDS DvMF_2310 NC_011769.1 2903639 2904985 R KEGG: dde:Dde_3625 hypothetical protein; hypothetical protein complement(2903639..2904985) Desulfovibrio vulgaris str. 'Miyazaki F' 7174243 YP_002436720.1 CDS DvMF_2311 NC_011769.1 2905350 2909594 R KEGG: dde:Dde_3624 hypothetical protein; hypothetical protein complement(2905350..2909594) Desulfovibrio vulgaris str. 'Miyazaki F' 7174244 YP_002436721.1 CDS DvMF_2312 NC_011769.1 2909594 2911135 R PFAM: metallophosphoesterase; KEGG: dde:Dde_3623 Ser/Thr protein phosphatase family protein; metallophosphoesterase complement(2909594..2911135) Desulfovibrio vulgaris str. 'Miyazaki F' 7174245 YP_002436722.1 CDS DvMF_2313 NC_011769.1 2911502 2912947 D PFAM: UMUC domain protein DNA-repair protein; KEGG: dde:Dde_3621 DNA-directed DNA polymerase; DNA-directed DNA polymerase 2911502..2912947 Desulfovibrio vulgaris str. 'Miyazaki F' 7174246 YP_002436723.1 CDS DvMF_2314 NC_011769.1 2912998 2913771 R PFAM: aminotransferase class IV; KEGG: dde:Dde_3619 hypothetical protein; class IV aminotransferase complement(2912998..2913771) Desulfovibrio vulgaris str. 'Miyazaki F' 7174247 YP_002436724.1 CDS DvMF_2315 NC_011769.1 2913768 2915411 R PFAM: chorismate binding-like; KEGG: dde:Dde_3618 aminodeoxychorismate synthase, subunit I; chorismate binding-like protein complement(2913768..2915411) Desulfovibrio vulgaris str. 'Miyazaki F' 7174248 YP_002436725.1 CDS DvMF_2316 NC_011769.1 2915383 2916225 R PFAM: glutamine amidotransferase class-I; KEGG: dde:Dde_3617 aminodeoxychorismate synthase, glutamine amidotransferase subunit; glutamine amidotransferase complement(2915383..2916225) Desulfovibrio vulgaris str. 'Miyazaki F' 7174249 YP_002436726.1 CDS DvMF_2317 NC_011769.1 2916268 2917101 R PFAM: protein of unknown function DUF152; KEGG: dde:Dde_3616 hypothetical protein; hypothetical protein complement(2916268..2917101) Desulfovibrio vulgaris str. 'Miyazaki F' 7174250 YP_002436727.1 CDS DvMF_2318 NC_011769.1 2917092 2917796 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sth:STH1192 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(2917092..2917796) Desulfovibrio vulgaris str. 'Miyazaki F' 7174251 YP_002436728.1 CDS DvMF_2319 NC_011769.1 2918195 2918872 D KEGG: dde:Dde_3615 phosphoesterase, Icc protein-like; phosphoesterase, Icc protein-like protein 2918195..2918872 Desulfovibrio vulgaris str. 'Miyazaki F' 7174252 YP_002436729.1 CDS DvMF_2320 NC_011769.1 2919356 2920219 R PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: gvi:glr3759 probable 3-hydroxyisobutyrate dehydrogenase; 6-phosphogluconate dehydrogenase complement(2919356..2920219) Desulfovibrio vulgaris str. 'Miyazaki F' 7174254 YP_002436730.1 CDS DvMF_2321 NC_011769.1 2920577 2921281 R KEGG: rpa:RPA2489 hypothetical protein; hypothetical protein complement(2920577..2921281) Desulfovibrio vulgaris str. 'Miyazaki F' 7174255 YP_002436731.1 CDS DvMF_2322 NC_011769.1 2921623 2924337 R PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase_; KEGG: emi:Emin_0772 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(2921623..2924337) Desulfovibrio vulgaris str. 'Miyazaki F' 7174256 YP_002436732.1 CDS DvMF_2323 NC_011769.1 2924836 2925915 D KEGG: pvi:Cvib_0830 hypothetical protein; hypothetical protein 2924836..2925915 Desulfovibrio vulgaris str. 'Miyazaki F' 7174257 YP_002436733.1 CDS DvMF_2324 NC_011769.1 2926030 2929518 R KEGG: dac:Daci_1508 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(2926030..2929518) Desulfovibrio vulgaris str. 'Miyazaki F' 7174258 YP_002436734.1 CDS DvMF_2325 NC_011769.1 2929640 2930539 R TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: bpt:Bpet2825 extracellular solute-binding protein; ectoine/hydroxyectoine ABC transporter solute-binding protein complement(2929640..2930539) Desulfovibrio vulgaris str. 'Miyazaki F' 7174259 YP_002436735.1 CDS DvMF_2326 NC_011769.1 2930828 2931592 D KEGG: dde:Dde_1667 hypothetical protein; hypothetical protein 2930828..2931592 Desulfovibrio vulgaris str. 'Miyazaki F' 7174260 YP_002436736.1 CDS DvMF_2327 NC_011769.1 2931804 2933087 R TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase family protein complement(2931804..2933087) Desulfovibrio vulgaris str. 'Miyazaki F' 7174261 YP_002436737.1 CDS DvMF_2328 NC_011769.1 2933424 2936039 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_3613 glycosyl transferase domain-containing protein; group 1 glycosyl transferase complement(2933424..2936039) Desulfovibrio vulgaris str. 'Miyazaki F' 7174262 YP_002436738.1 CDS DvMF_2329 NC_011769.1 2936549 2937583 R PFAM: glycosyl transferase family 2; KEGG: dde:Dde_3612 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(2936549..2937583) Desulfovibrio vulgaris str. 'Miyazaki F' 7174263 YP_002436739.1 CDS DvMF_2330 NC_011769.1 2937653 2938588 R PFAM: PP-loop domain protein; KEGG: dde:Dde_3611 hypothetical protein; PP-loop domain-containing protein complement(2937653..2938588) Desulfovibrio vulgaris str. 'Miyazaki F' 7174264 YP_002436740.1 CDS DvMF_2331 NC_011769.1 2938916 2939167 R KEGG: dde:Dde_3610 hypothetical protein; hypothetical protein complement(2938916..2939167) Desulfovibrio vulgaris str. 'Miyazaki F' 7174265 YP_002436741.1 CDS DvMF_2332 NC_011769.1 2939655 2940023 D PFAM: response regulator receiver; KEGG: dde:Dde_3609 response regulator receiver domain-containing protein; response regulator receiver protein 2939655..2940023 Desulfovibrio vulgaris str. 'Miyazaki F' 7174266 YP_002436742.1 CDS DvMF_2333 NC_011769.1 2940460 2942283 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1356 histidine kinase; integral membrane sensor signal transduction histidine kinase 2940460..2942283 Desulfovibrio vulgaris str. 'Miyazaki F' 7174267 YP_002436743.1 CDS DvMF_2334 NC_011769.1 2942283 2942738 D PFAM: response regulator receiver; KEGG: dol:Dole_1358 response regulator receiver protein; response regulator receiver protein 2942283..2942738 Desulfovibrio vulgaris str. 'Miyazaki F' 7174268 YP_002436744.1 CDS DvMF_2335 NC_011769.1 2942958 2943632 D PFAM: peptidase M50; KEGG: dde:Dde_3608 M50 family peptidase; peptidase M50 2942958..2943632 Desulfovibrio vulgaris str. 'Miyazaki F' 7174269 YP_002436745.1 CDS DvMF_2336 NC_011769.1 2943780 2944769 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2943780..2944769 Desulfovibrio vulgaris str. 'Miyazaki F' 7174270 YP_002436746.1 CDS DvMF_2337 NC_011769.1 2945077 2945898 D PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_3606 hypothetical protein; hypothetical protein 2945077..2945898 Desulfovibrio vulgaris str. 'Miyazaki F' 7174271 YP_002436747.1 CDS DvMF_2338 NC_011769.1 2946206 2946727 D TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: dde:Dde_3605 bifunctional ADP-heptose synthase; rfaE bifunctional protein 2946206..2946727 Desulfovibrio vulgaris str. 'Miyazaki F' 7174272 YP_002436748.1 CDS DvMF_2339 NC_011769.1 2946905 2949511 R PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfu:Sfum_0630 pyruvate, water dikinase; pyruvate, water dikinase complement(2946905..2949511) Desulfovibrio vulgaris str. 'Miyazaki F' 7174273 YP_002436749.1 CDS DvMF_2340 NC_011769.1 2949515 2952328 R PFAM: sigma-54 factor interaction domain-containing protein; histidine kinase HAMP region domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0697 response regulator receiver domain-containing protein; Fis family transcriptional regulator complement(2949515..2952328) Desulfovibrio vulgaris str. 'Miyazaki F' 7174274 YP_002436750.1 CDS DvMF_2341 NC_011769.1 2952897 2953190 D KEGG: sfu:Sfum_0625 hypothetical protein; hypothetical protein 2952897..2953190 Desulfovibrio vulgaris str. 'Miyazaki F' 7174275 YP_002436751.1 CDS DvMF_2342 NC_011769.1 2953219 2954271 D PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_0626 protein of unknown function DUF81; hypothetical protein 2953219..2954271 Desulfovibrio vulgaris str. 'Miyazaki F' 7174276 YP_002436752.1 CDS DvMF_2343 NC_011769.1 2954303 2954908 D KEGG: sfu:Sfum_0627 lipoprotein; lipoprotein 2954303..2954908 Desulfovibrio vulgaris str. 'Miyazaki F' 7174277 YP_002436753.1 CDS DvMF_2344 NC_011769.1 2954985 2955278 D hypothetical protein 2954985..2955278 Desulfovibrio vulgaris str. 'Miyazaki F' 7174278 YP_002436754.1 CDS DvMF_2345 NC_011769.1 2955275 2956111 D KEGG: sfu:Sfum_0629 hypothetical protein; hypothetical protein 2955275..2956111 Desulfovibrio vulgaris str. 'Miyazaki F' 7174279 YP_002436755.1 CDS DvMF_2346 NC_011769.1 2956189 2956599 D PFAM: response regulator receiver; KEGG: sfu:Sfum_0648 response regulator receiver protein; response regulator receiver protein 2956189..2956599 Desulfovibrio vulgaris str. 'Miyazaki F' 7174280 YP_002436756.1 CDS DvMF_2347 NC_011769.1 2956936 2957868 R KEGG: dde:Dde_0307 hypothetical protein; hypothetical protein complement(2956936..2957868) Desulfovibrio vulgaris str. 'Miyazaki F' 7174281 YP_002436757.1 CDS DvMF_2348 NC_011769.1 2958252 2959163 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0308 ABC transporter permease; binding-protein-dependent transporters inner membrane component 2958252..2959163 Desulfovibrio vulgaris str. 'Miyazaki F' 7174282 YP_002436758.1 CDS DvMF_2349 NC_011769.1 2959196 2960041 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0309 ABC transporter permease; binding-protein-dependent transporters inner membrane component 2959196..2960041 Desulfovibrio vulgaris str. 'Miyazaki F' 7174283 YP_002436759.1 CDS DvMF_2350 NC_011769.1 2960259 2963261 D KEGG: syf:Synpcc7942_1811 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase 2960259..2963261 Desulfovibrio vulgaris str. 'Miyazaki F' 7174284 YP_002436760.1 CDS DvMF_2351 NC_011769.1 2963516 2965378 R PFAM: aminodeoxychorismate lyase; KEGG: dde:Dde_0315 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(2963516..2965378) Desulfovibrio vulgaris str. 'Miyazaki F' 7174285 YP_002436761.1 CDS DvMF_2352 NC_011769.1 2966062 2966490 R PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: dde:Dde_0314 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF complement(2966062..2966490) Desulfovibrio vulgaris str. 'Miyazaki F' 7174286 YP_002436762.1 CDS DvMF_2353 NC_011769.1 2966817 2970431 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase; KEGG: dde:Dde_0312 oxidoreductase; FAD linked oxidase complement(2966817..2970431) Desulfovibrio vulgaris str. 'Miyazaki F' 7174287 YP_002436763.1 CDS DvMF_2354 NC_011769.1 2970825 2972345 D KEGG: pph:Ppha_2828 ATPase (AAA+ superfamily)-like protein; ATPase (AAA+ superfamily)-like protein 2970825..2972345 Desulfovibrio vulgaris str. 'Miyazaki F' 7174288 YP_002436764.1 CDS DvMF_2355 NC_011769.1 2972568 2975126 R TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: dde:Dde_0555 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF complement(2972568..2975126) Desulfovibrio vulgaris str. 'Miyazaki F' 7174289 YP_002436765.1 CDS DvMF_2356 NC_011769.1 2975651 2976217 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_0556 MerR family transcriptional regulator; XRE family transcriptional regulator 2975651..2976217 Desulfovibrio vulgaris str. 'Miyazaki F' 7174290 YP_002436766.1 CDS DvMF_2357 NC_011769.1 2976231 2977883 D PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0557 acyl-CoA synthetase; AMP-binding protein 2976231..2977883 Desulfovibrio vulgaris str. 'Miyazaki F' 7174291 YP_002436767.1 CDS DvMF_2358 NC_011769.1 2978158 2979636 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: cau:Caur_1401 L-aspartate oxidase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2978158..2979636 Desulfovibrio vulgaris str. 'Miyazaki F' 7174292 YP_002436768.1 CDS DvMF_2359 NC_011769.1 2980031 2980543 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3633 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein complement(2980031..2980543) Desulfovibrio vulgaris str. 'Miyazaki F' 7174293 YP_002436769.1 CDS DvMF_2360 NC_011769.1 2980896 2982236 R TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: hypothetical protein; KEGG: lip:LI0692 periplasmic component of the Tol biopolymer transporter; Tol-Pal system beta propeller repeat-containing protein TolB complement(2980896..2982236) Desulfovibrio vulgaris str. 'Miyazaki F' 7174294 YP_002436770.1 CDS DvMF_2361 NC_011769.1 2982233 2982724 R TIGRFAM: TonB family protein; KEGG: dde:Dde_3631 TonB-like; TonB family protein complement(2982233..2982724) Desulfovibrio vulgaris str. 'Miyazaki F' 7174295 YP_002436771.1 CDS DvMF_2362 NC_011769.1 2982721 2983749 R TIGRFAM: TonB family protein; protein TolA; KEGG: dde:Dde_3631 TonB-like; protein TolA complement(2982721..2983749) Desulfovibrio vulgaris str. 'Miyazaki F' 7174296 YP_002436772.1 CDS DvMF_2363 NC_011769.1 2983827 2984246 R TIGRFAM: protein TolR; PFAM: biopolymertransporter ExbD/TolR; KEGG: dde:Dde_3630 biopolymer ExbD/TolR family transporter; protein TolR complement(2983827..2984246) Desulfovibrio vulgaris str. 'Miyazaki F' 7174297 YP_002436773.1 CDS DvMF_2364 NC_011769.1 2984250 2984945 R TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3629 TolQ protein; protein TolQ complement(2984250..2984945) Desulfovibrio vulgaris str. 'Miyazaki F' 7174298 YP_002436774.1 CDS DvMF_2365 NC_011769.1 2985557 2987005 D PFAM: outer membrane efflux protein; KEGG: dde:Dde_3627 outer membrane efflux protein; outer membrane efflux protein 2985557..2987005 Desulfovibrio vulgaris str. 'Miyazaki F' 7174299 YP_002436775.1 CDS DvMF_2366 NC_011769.1 2987218 2987613 D PFAM: ferric-uptake regulator; KEGG: dde:Dde_3674 ferric uptake regulator family protein; Fur family ferric uptake regulator 2987218..2987613 Desulfovibrio vulgaris str. 'Miyazaki F' 7174300 YP_002436776.1 CDS DvMF_2367 NC_011769.1 2988087 2988662 D PFAM: rubrerythrin; KEGG: dde:Dde_1222 rubrerythrin; rubrerythrin 2988087..2988662 Desulfovibrio vulgaris str. 'Miyazaki F' 7174301 YP_002436777.1 CDS DvMF_2368 NC_011769.1 2988765 2988992 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_0689 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 2988765..2988992 Desulfovibrio vulgaris str. 'Miyazaki F' 7174302 YP_002436778.1 CDS DvMF_2369 NC_011769.1 2989135 2989950 R PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: dde:Dde_3645 TPR repeat-containing protein; hypothetical protein complement(2989135..2989950) Desulfovibrio vulgaris str. 'Miyazaki F' 7174303 YP_002436779.1 CDS DvMF_2370 NC_011769.1 2990067 2991197 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(2990067..2991197) Desulfovibrio vulgaris str. 'Miyazaki F' 7174304 YP_002436780.1 CDS DvMF_2371 NC_011769.1 2991194 2992006 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2991194..2992006) Desulfovibrio vulgaris str. 'Miyazaki F' 7174305 YP_002436781.1 CDS prfC NC_011769.1 2992478 2994067 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 2992478..2994067 Desulfovibrio vulgaris str. 'Miyazaki F' 7174306 YP_002436782.1 CDS DvMF_2373 NC_011769.1 2994337 2998836 R KEGG: mac:MA2013 sensory transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; SMART: PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(2994337..2998836) Desulfovibrio vulgaris str. 'Miyazaki F' 7174307 YP_002436783.1 CDS DvMF_2374 NC_011769.1 2998829 3000175 R KEGG: dde:Dde_0536 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(2998829..3000175) Desulfovibrio vulgaris str. 'Miyazaki F' 7174308 YP_002436784.1 CDS DvMF_2375 NC_011769.1 3000375 3001025 R PFAM: protein of unknown function DUF208; KEGG: lip:LI0772 hypothetical protein; hypothetical protein complement(3000375..3001025) Desulfovibrio vulgaris str. 'Miyazaki F' 7174309 YP_002436785.1 CDS DvMF_2376 NC_011769.1 3001030 3002505 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: dde:Dde_0537 ribonuclease E; ribonuclease, Rne/Rng family complement(3001030..3002505) Desulfovibrio vulgaris str. 'Miyazaki F' 7174310 YP_002436786.1 CDS DvMF_2377 NC_011769.1 3002886 3003983 R PFAM: radical SAM protein; KEGG: dde:Dde_0538 radical SAM domain-containing protein; radical SAM protein complement(3002886..3003983) Desulfovibrio vulgaris str. 'Miyazaki F' 7174311 YP_002436787.1 CDS DvMF_2378 NC_011769.1 3004589 3005485 D PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: dde:Dde_0539 protein-L-isoaspartate methyltransferase-like; tRNA (adenine-N(1)-)-methyltransferase 3004589..3005485 Desulfovibrio vulgaris str. 'Miyazaki F' 7174312 YP_002436788.1 CDS DvMF_2379 NC_011769.1 3005797 3007779 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0250 ATPase; ABC transporter 3005797..3007779 Desulfovibrio vulgaris str. 'Miyazaki F' 7174313 YP_002436789.1 CDS DvMF_2380 NC_011769.1 3007799 3008308 D PFAM: NUDIX hydrolase; KEGG: dde:Dde_0251 mutator MutT protein; NUDIX hydrolase 3007799..3008308 Desulfovibrio vulgaris str. 'Miyazaki F' 7174314 YP_002436790.1 CDS DvMF_2381 NC_011769.1 3008545 3008985 D PFAM: protein of unknown function DUF606; KEGG: dde:Dde_0252 hypothetical protein; hypothetical protein 3008545..3008985 Desulfovibrio vulgaris str. 'Miyazaki F' 7174315 YP_002436791.1 CDS DvMF_2382 NC_011769.1 3009528 3010577 D KEGG: dde:Dde_0254 aspartate semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase NAD - binding; semialdehyde dehydrogenase dimerisation region; aspartate-semialdehyde dehydrogenase 3009528..3010577 Desulfovibrio vulgaris str. 'Miyazaki F' 7174316 YP_002436792.1 CDS DvMF_2383 NC_011769.1 3010731 3011672 D PFAM: aminotransferase class IV; KEGG: dde:Dde_0255 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase; class IV aminotransferase 3010731..3011672 Desulfovibrio vulgaris str. 'Miyazaki F' 7174317 YP_002436793.1 CDS DvMF_2384 NC_011769.1 3011992 3013116 D PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 3011992..3013116 Desulfovibrio vulgaris str. 'Miyazaki F' 7174318 YP_002436794.1 CDS DvMF_2385 NC_011769.1 3014115 3015689 R PFAM: cytochrome C552; KEGG: lip:LI1002 chain A, cytochrome C nitrite reductase; nitrite reductase complement(3014115..3015689) Desulfovibrio vulgaris str. 'Miyazaki F' 7174319 YP_002436795.1 CDS DvMF_2386 NC_011769.1 3015682 3016158 R KEGG: lip:LI1001 cytochrome C nitrite reductase small subunit; cytochrome C nitrite reductase small subunit complement(3015682..3016158) Desulfovibrio vulgaris str. 'Miyazaki F' 7174320 YP_002436796.1 CDS DvMF_2387 NC_011769.1 3016863 3017990 D KEGG: sfu:Sfum_1725 glutamate synthase (NADPH); glutamate synthase 3016863..3017990 Desulfovibrio vulgaris str. 'Miyazaki F' 7174321 YP_002436797.1 CDS DvMF_2388 NC_011769.1 3017954 3019588 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: sfu:Sfum_1724 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 3017954..3019588 Desulfovibrio vulgaris str. 'Miyazaki F' 7174322 YP_002436798.1 CDS DvMF_2389 NC_011769.1 3019951 3022284 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase subunit alpha domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3019951..3022284 Desulfovibrio vulgaris str. 'Miyazaki F' 7174323 YP_002436799.1 CDS DvMF_2390 NC_011769.1 3022402 3024141 R KEGG: swo:Swol_0938 arsenite-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase ArsA complement(3022402..3024141) Desulfovibrio vulgaris str. 'Miyazaki F' 7174324 YP_002436800.1 CDS DvMF_2391 NC_011769.1 3024185 3024508 R PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: swo:Swol_0937 arsenical resistance operon trans-acting repressor; arsenical resistance operon trans-acting repressor ArsD complement(3024185..3024508) Desulfovibrio vulgaris str. 'Miyazaki F' 7174325 YP_002436801.1 CDS DvMF_2392 NC_011769.1 3024647 3025000 R PFAM: regulatory protein ArsR; KEGG: psa:PST_0241 arsenic resistance transcriptional regulator; ArsR family transcriptional regulator complement(3024647..3025000) Desulfovibrio vulgaris str. 'Miyazaki F' 7174326 YP_002436802.1 CDS DvMF_2393 NC_011769.1 3025156 3025932 R hypothetical protein complement(3025156..3025932) Desulfovibrio vulgaris str. 'Miyazaki F' 7174327 YP_002436803.1 CDS DvMF_2394 NC_011769.1 3026504 3026854 D KEGG: pau:PA14_31300 hypothetical protein; hypothetical protein 3026504..3026854 Desulfovibrio vulgaris str. 'Miyazaki F' 7174328 YP_002436804.1 CDS DvMF_2395 NC_011769.1 3027028 3028716 D KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 3027028..3028716 Desulfovibrio vulgaris str. 'Miyazaki F' 7174329 YP_002436805.1 CDS DvMF_2396 NC_011769.1 3028863 3029594 R PFAM: carbonic anhydrase; KEGG: pca:Pcar_2939 carbonic anhydrase; carbonic anhydrase complement(3028863..3029594) Desulfovibrio vulgaris str. 'Miyazaki F' 7174330 YP_002436806.1 CDS DvMF_2397 NC_011769.1 3029746 3030570 R KEGG: dde:Dde_0264 hypothetical protein; hypothetical protein complement(3029746..3030570) Desulfovibrio vulgaris str. 'Miyazaki F' 7174331 YP_002436807.1 CDS DvMF_2398 NC_011769.1 3031009 3031941 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rru:Rru_A2273 nickel transporter ATP-binding protein; ABC transporter complement(3031009..3031941) Desulfovibrio vulgaris str. 'Miyazaki F' 7174332 YP_002436808.1 CDS DvMF_2399 NC_011769.1 3031953 3032975 R PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: kpn:KPN_03853 ATP-binding protein of nickel transporter; ABC transporter complement(3031953..3032975) Desulfovibrio vulgaris str. 'Miyazaki F' 7174333 YP_002436809.1 CDS DvMF_2400 NC_011769.1 3032972 3034093 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ppw:PputW619_3007 nickel ABC transporter permease subunit NikC; binding-protein-dependent transporters inner membrane component complement(3032972..3034093) Desulfovibrio vulgaris str. 'Miyazaki F' 7174334 YP_002436810.1 CDS DvMF_2401 NC_011769.1 3034090 3035031 R with NikACDE is involved in nickel transport into the cell; nickel transporter permease NikB complement(3034090..3035031) Desulfovibrio vulgaris str. 'Miyazaki F' 7174335 YP_002436811.1 CDS DvMF_2402 NC_011769.1 3035450 3037066 R KEGG: rru:Rru_A2277 nickel ABC transporter periplasmic nickel-binding; TIGRFAM: nickel ABC transporter periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5; nickel ABC transporter substrate-binding protein complement(3035450..3037066) Desulfovibrio vulgaris str. 'Miyazaki F' 7174336 YP_002436812.1 CDS DvMF_2403 NC_011769.1 3037665 3037874 D PFAM: TOBE domain protein; KEGG: mma:MM_0224 molybdenum-pterin-binding-protein; TOBE domain-containing protein 3037665..3037874 Desulfovibrio vulgaris str. 'Miyazaki F' 7174337 YP_002436813.1 CDS DvMF_2404 NC_011769.1 3038006 3038593 R PFAM: protein of unknown function DUF1105; KEGG: bca:BCE_A0238 hypothetical protein; hypothetical protein complement(3038006..3038593) Desulfovibrio vulgaris str. 'Miyazaki F' 7174338 YP_002436814.1 CDS DvMF_2405 NC_011769.1 3039264 3039725 D PFAM: Tir chaperone family protein; KEGG: pcu:pc1105 hypothetical protein; Tir chaperone family protein 3039264..3039725 Desulfovibrio vulgaris str. 'Miyazaki F' 7174339 YP_002436815.1 CDS DvMF_2406 NC_011769.1 3039862 3041976 D KEGG: fal:FRAAL5796 chromosome partition protein smc; hypothetical protein 3039862..3041976 Desulfovibrio vulgaris str. 'Miyazaki F' 7174340 YP_002436816.1 CDS DvMF_2407 NC_011769.1 3042090 3043265 D KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component; ABC transporter periplasmic protein 3042090..3043265 Desulfovibrio vulgaris str. 'Miyazaki F' 7174341 YP_002436817.1 CDS DvMF_2408 NC_011769.1 3043276 3045846 D PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP2229 inner membrane transporter; major facilitator superfamily protein 3043276..3045846 Desulfovibrio vulgaris str. 'Miyazaki F' 7174342 YP_002436818.1 CDS DvMF_2409 NC_011769.1 3045843 3047543 D KEGG: pin:Ping_3332 hypothetical protein; hypothetical protein 3045843..3047543 Desulfovibrio vulgaris str. 'Miyazaki F' 7174343 YP_002436819.1 CDS DvMF_2410 NC_011769.1 3047840 3049822 R PFAM: histidine kinase HAMP region domain protein; stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: lip:LI1150 regulator; protein serine/threonine phosphatase complement(3047840..3049822) Desulfovibrio vulgaris str. 'Miyazaki F' 7174344 YP_002436820.1 CDS DvMF_2411 NC_011769.1 3049838 3051172 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: lip:LI1151 transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains; Fis family transcriptional regulator complement(3049838..3051172) Desulfovibrio vulgaris str. 'Miyazaki F' 7174345 YP_002436821.1 CDS DvMF_2412 NC_011769.1 3051233 3052273 R TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter; KEGG: lip:LI0551 translocation protein in type III secretion; type III secretion protein, YscU/HrpY family complement(3051233..3052273) Desulfovibrio vulgaris str. 'Miyazaki F' 7174346 YP_002436822.1 CDS DvMF_2413 NC_011769.1 3052280 3053116 R TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: lip:LI0550 type III secretion component protein SctT; type III secretion protein SpaR/YscT/HrcT complement(3052280..3053116) Desulfovibrio vulgaris str. 'Miyazaki F' 7174347 YP_002436823.1 CDS DvMF_2414 NC_011769.1 3053124 3053384 R TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ family 3; KEGG: lip:LI0549 probable translocation protein in type III secretion; type III secretion protein, HrpO family complement(3053124..3053384) Desulfovibrio vulgaris str. 'Miyazaki F' 7174348 YP_002436824.1 CDS DvMF_2415 NC_011769.1 3053406 3055496 R TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: lip:LI0548 type III secretion pore protein; type III secretion protein, HrcV family complement(3053406..3055496) Desulfovibrio vulgaris str. 'Miyazaki F' 7174349 YP_002436825.1 CDS DvMF_2416 NC_011769.1 3055499 3055858 R PFAM: hypothetical protein; KEGG: lip:LI0547 NA; hypothetical protein complement(3055499..3055858) Desulfovibrio vulgaris str. 'Miyazaki F' 7174350 YP_002436826.1 CDS DvMF_2417 NC_011769.1 3055861 3056229 R KEGG: lip:LI1152 NA; hypothetical protein complement(3055861..3056229) Desulfovibrio vulgaris str. 'Miyazaki F' 7174351 YP_002436827.1 CDS DvMF_2418 NC_011769.1 3056226 3056627 R TIGRFAM: type III secretion chaperone SycN; KEGG: lip:LI0546 NA; type III secretion chaperone SycN complement(3056226..3056627) Desulfovibrio vulgaris str. 'Miyazaki F' 7174352 YP_002436828.1 CDS DvMF_2419 NC_011769.1 3056624 3057763 R TIGRFAM: type III secretion effector delivery regulator, TyeA family; type III secretion regulator YopN/LcrE/InvE/MxiC; PFAM: TyeA domain protein; KEGG: lip:LI1153 outer protein N; type III secretion regulator YopN/LcrE/InvE/MxiC complement(3056624..3057763) Desulfovibrio vulgaris str. 'Miyazaki F' 7174353 YP_002436829.1 CDS DvMF_2420 NC_011769.1 3058325 3058621 D KEGG: lip:LI0545 NA; hypothetical protein 3058325..3058621 Desulfovibrio vulgaris str. 'Miyazaki F' 7174354 YP_002436830.1 CDS DvMF_2421 NC_011769.1 3058804 3059316 D KEGG: lip:LI1154 NA; hypothetical protein 3058804..3059316 Desulfovibrio vulgaris str. 'Miyazaki F' 7174355 YP_002436831.1 CDS DvMF_2422 NC_011769.1 3059414 3059917 D TIGRFAM: type III secretion low calcium response chaperone LcrH/SycD; PFAM: Tetratricopeptide TPR_3; KEGG: lip:LI1157 regulatory protein PcrH; type III secretion low calcium response chaperone LcrH/SycD 3059414..3059917 Desulfovibrio vulgaris str. 'Miyazaki F' 7174356 YP_002436832.1 CDS DvMF_2423 NC_011769.1 3059914 3060930 D KEGG: lip:LI1158 NA; hypothetical protein 3059914..3060930 Desulfovibrio vulgaris str. 'Miyazaki F' 7174357 YP_002436833.1 CDS DvMF_2424 NC_011769.1 3060941 3061774 D KEGG: bbr:BB1620 outer protein D; hypothetical protein 3060941..3061774 Desulfovibrio vulgaris str. 'Miyazaki F' 7174358 YP_002436834.1 CDS DvMF_2425 NC_011769.1 3061858 3062364 D KEGG: bpa:BPP2239 hypothetical protein; hypothetical protein 3061858..3062364 Desulfovibrio vulgaris str. 'Miyazaki F' 7174359 YP_002436835.1 CDS DvMF_2426 NC_011769.1 3062464 3064464 D TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: lip:LI1160 type III secretion protein YscC; type III secretion outer membrane pore, YscC/HrcC family 3062464..3064464 Desulfovibrio vulgaris str. 'Miyazaki F' 7174360 YP_002436836.1 CDS DvMF_2427 NC_011769.1 3064461 3066029 D TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; KEGG: lip:LI1161 NA; type III secretion apparatus protein, YscD/HrpQ family 3064461..3066029 Desulfovibrio vulgaris str. 'Miyazaki F' 7174361 YP_002436837.1 CDS DvMF_2428 NC_011769.1 3066022 3066240 D hypothetical protein 3066022..3066240 Desulfovibrio vulgaris str. 'Miyazaki F' 7174362 YP_002436838.1 CDS DvMF_2429 NC_011769.1 3066257 3066511 D hypothetical protein 3066257..3066511 Desulfovibrio vulgaris str. 'Miyazaki F' 7174363 YP_002436839.1 CDS DvMF_2430 NC_011769.1 3066745 3067110 D KEGG: lip:LI0544 NA; hypothetical protein 3066745..3067110 Desulfovibrio vulgaris str. 'Miyazaki F' 7174364 YP_002436840.1 CDS DvMF_2431 NC_011769.1 3067197 3067970 D KEGG: gga:395069 collagen, type II, alpha 1; hypothetical protein 3067197..3067970 Desulfovibrio vulgaris str. 'Miyazaki F' 7174365 YP_002436841.1 CDS DvMF_2432 NC_011769.1 3067990 3068823 D TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: lip:LI0543 LscJ; type III secretion apparatus lipoprotein, YscJ/HrcJ family 3067990..3068823 Desulfovibrio vulgaris str. 'Miyazaki F' 7174366 YP_002436842.1 CDS DvMF_2433 NC_011769.1 3068833 3069570 D KEGG: lip:LI0542 NA; hypothetical protein 3068833..3069570 Desulfovibrio vulgaris str. 'Miyazaki F' 7174367 YP_002436843.1 CDS DvMF_2434 NC_011769.1 3069549 3070166 D TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: flagellar assembly protein FliH; KEGG: lip:LI0541 type III secretion system protein; type III secretion system protein 3069549..3070166 Desulfovibrio vulgaris str. 'Miyazaki F' 7174368 YP_002436844.1 CDS DvMF_2435 NC_011769.1 3070214 3071530 D KEGG: lip:LI0540 type III secretion system ATPase; TIGRFAM: ATPase, FliI/YscN family; type III secretion apparatus H+-transporting two-sector ATPase; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA; type III secretion system ATPase 3070214..3071530 Desulfovibrio vulgaris str. 'Miyazaki F' 7174369 YP_002436845.1 CDS DvMF_2436 NC_011769.1 3071534 3072037 D PFAM: type III secretion YscO fmaily protein; KEGG: lip:LI0539 hypothetical protein; type III secretion YscO fmaily protein 3071534..3072037 Desulfovibrio vulgaris str. 'Miyazaki F' 7174370 YP_002436846.1 CDS DvMF_2437 NC_011769.1 3072049 3072813 D TIGRFAM: type III secretion system needle length determinant; KEGG: lip:LI1165 NA; type III secretion system needle length determinant 3072049..3072813 Desulfovibrio vulgaris str. 'Miyazaki F' 7174371 YP_002436847.1 CDS DvMF_2438 NC_011769.1 3072806 3074035 D TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: lip:LI1166 translocation protein in type III secretion; type III secretion system apparatus protein YscQ/HrcQ 3072806..3074035 Desulfovibrio vulgaris str. 'Miyazaki F' 7174372 YP_002436848.1 CDS DvMF_2439 NC_011769.1 3074032 3074682 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 3074032..3074682 Desulfovibrio vulgaris str. 'Miyazaki F' 7174373 YP_002436849.1 CDS DvMF_2440 NC_011769.1 3074712 3075047 D TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: lip:LI1167 anti-anti-sigma factor; anti-sigma-factor antagonist 3074712..3075047 Desulfovibrio vulgaris str. 'Miyazaki F' 7174374 YP_002436850.1 CDS DvMF_2441 NC_011769.1 3075062 3075478 D KEGG: lip:LI1168 sigma regulatory factor-histidine kinase; anti-sigma regulatory factor, serine/threonine protein kinase 3075062..3075478 Desulfovibrio vulgaris str. 'Miyazaki F' 7174375 YP_002436851.1 CDS DvMF_2442 NC_011769.1 3075945 3076682 D PFAM: lytic transglycosylase catalytic; KEGG: lip:LI1169 transglycosylase; lytic transglycosylase 3075945..3076682 Desulfovibrio vulgaris str. 'Miyazaki F' 7174376 YP_002436852.1 CDS DvMF_2443 NC_011769.1 3077082 3077657 R KEGG: dde:Dde_3553 hypothetical protein; hypothetical protein complement(3077082..3077657) Desulfovibrio vulgaris str. 'Miyazaki F' 7174378 YP_002436853.1 CDS DvMF_2444 NC_011769.1 3077664 3078584 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: maq:Maqu_2513 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3077664..3078584) Desulfovibrio vulgaris str. 'Miyazaki F' 7174379 YP_002436854.1 CDS DvMF_2445 NC_011769.1 3078778 3079386 R PFAM: HPP family protein?; KEGG: mgm:Mmc1_0464 HPP family protein+B94; HPP family protein complement(3078778..3079386) Desulfovibrio vulgaris str. 'Miyazaki F' 7174380 YP_002436855.1 CDS DvMF_2446 NC_011769.1 3079866 3081131 D KEGG: dde:Dde_0540 phenylacetate-coenzyme A ligase; phenylacetate-coenzyme A ligase 3079866..3081131 Desulfovibrio vulgaris str. 'Miyazaki F' 7174381 YP_002436856.1 CDS DvMF_2447 NC_011769.1 3081122 3082807 D PFAM: PDZ/DHR/GLGF domain protein; protein of unknown function DUF399; KEGG: dde:Dde_0541 PDZ/DHR/GLGF; hypothetical protein 3081122..3082807 Desulfovibrio vulgaris str. 'Miyazaki F' 7174382 YP_002436857.1 CDS DvMF_2448 NC_011769.1 3083068 3083475 D PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0150; KEGG: ccr:CC_3185 CopG family DNA-binding protein; CopG family transcriptional regulator 3083068..3083475 Desulfovibrio vulgaris str. 'Miyazaki F' 7174383 YP_002436858.1 CDS DvMF_2449 NC_011769.1 3083870 3084880 D KEGG: dde:Dde_0542 DNA-(apurinic or apyrimidinic site) lyase / formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: zinc finger Fpg domain protein; Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 3083870..3084880 Desulfovibrio vulgaris str. 'Miyazaki F' 7174384 YP_002436859.1 CDS DvMF_2450 NC_011769.1 3084977 3088279 R PFAM: ComEC/Rec2-related protein; KEGG: dde:Dde_0547 ComEC/Rec2-related protein; ComEC/Rec2-like protein complement(3084977..3088279) Desulfovibrio vulgaris str. 'Miyazaki F' 7174385 YP_002436860.1 CDS DvMF_2451 NC_011769.1 3088361 3089614 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3088361..3089614) Desulfovibrio vulgaris str. 'Miyazaki F' 7174386 YP_002436861.1 CDS DvMF_2452 NC_011769.1 3090287 3093820 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: dde:Dde_0544 periplasmic sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase complement(3090287..3093820) Desulfovibrio vulgaris str. 'Miyazaki F' 7174388 YP_002436862.1 CDS DvMF_2453 NC_011769.1 3093977 3095767 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: dde:Dde_0543 integral membrane protein MviN; integral membrane protein MviN complement(3093977..3095767) Desulfovibrio vulgaris str. 'Miyazaki F' 7174389 YP_002436863.1 CDS DvMF_2454 NC_011769.1 3096204 3098195 D KEGG: dde:Dde_0550 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3096204..3098195 Desulfovibrio vulgaris str. 'Miyazaki F' 7174390 YP_002436864.1 CDS DvMF_2455 NC_011769.1 3098345 3098800 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: hemerythrin HHE cation binding domain protein; KEGG: mag:amb2535 hemerythrin; FOG: CheY-like receiver; hemerythrin-like metal-binding protein 3098345..3098800 Desulfovibrio vulgaris str. 'Miyazaki F' 7174391 YP_002436865.1 CDS DvMF_2456 NC_011769.1 3098955 3099734 D KEGG: dde:Dde_0551 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 3098955..3099734 Desulfovibrio vulgaris str. 'Miyazaki F' 7174392 YP_002436866.1 CDS DvMF_2457 NC_011769.1 3099968 3100159 R KEGG: dde:Dde_0552 hypothetical protein; hypothetical protein complement(3099968..3100159) Desulfovibrio vulgaris str. 'Miyazaki F' 7174393 YP_002436867.1 CDS DvMF_2458 NC_011769.1 3100909 3101562 D PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: dde:Dde_1258 fumarate reductase, cytochrome b subunit; fumarate reductase respiratory complex transmembrane subunit 3100909..3101562 Desulfovibrio vulgaris str. 'Miyazaki F' 7174394 YP_002436868.1 CDS DvMF_2459 NC_011769.1 3101576 3103393 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 3101576..3103393 Desulfovibrio vulgaris str. 'Miyazaki F' 7174395 YP_002436869.1 CDS frdB NC_011769.1 3103544 3104287 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 3103544..3104287 Desulfovibrio vulgaris str. 'Miyazaki F' 7174396 YP_002436870.1 CDS DvMF_2461 NC_011769.1 3104594 3105433 D Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 3104594..3105433 Desulfovibrio vulgaris str. 'Miyazaki F' 7174397 YP_002436871.1 CDS DvMF_2462 NC_011769.1 3105748 3106275 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: dde:Dde_1254 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit beta 3105748..3106275 Desulfovibrio vulgaris str. 'Miyazaki F' 7174398 YP_002436872.1 CDS DvMF_2463 NC_011769.1 3106320 3107615 D KEGG: dde:Dde_0554 hypothetical protein; hypothetical protein 3106320..3107615 Desulfovibrio vulgaris str. 'Miyazaki F' 7174399 YP_002436873.1 CDS DvMF_2464 NC_011769.1 3108048 3108530 D KEGG: dde:Dde_1347 hypothetical protein; hypothetical protein 3108048..3108530 Desulfovibrio vulgaris str. 'Miyazaki F' 7174400 YP_002436874.1 CDS DvMF_2465 NC_011769.1 3109030 3110301 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_0072 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3109030..3110301) Desulfovibrio vulgaris str. 'Miyazaki F' 7174401 YP_002436875.1 CDS DvMF_2467 NC_011769.1 3112109 3112639 R KEGG: sco:SCO3115 hypothetical protein; hypothetical protein complement(3112109..3112639) Desulfovibrio vulgaris str. 'Miyazaki F' 7174403 YP_002436876.1 CDS DvMF_2468 NC_011769.1 3112698 3113495 R KEGG: spt:SPA2121 molybdopterin-containing oxidoreductase membrane anchor subunit; molybdopterin-containing oxidoreductase membrane anchor subunit complement(3112698..3113495) Desulfovibrio vulgaris str. 'Miyazaki F' 7174404 YP_002436877.1 CDS DvMF_2469 NC_011769.1 3113492 3114058 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sew:SeSA_A0770 molybdopterin-containing oxidoreductase iron-sulfur subunit; 4Fe-4S ferredoxin complement(3113492..3114058) Desulfovibrio vulgaris str. 'Miyazaki F' 7174405 YP_002436878.1 CDS DvMF_2470 NC_011769.1 3114070 3116325 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit; molybdopterin oxidoreductase complement(3114070..3116325) Desulfovibrio vulgaris str. 'Miyazaki F' 7174406 YP_002436879.1 CDS DvMF_2471 NC_011769.1 3116322 3117053 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: stm:STM0610 anaerobic dehydrogenase component; cytoplasmic chaperone TorD family protein complement(3116322..3117053) Desulfovibrio vulgaris str. 'Miyazaki F' 7174407 YP_002436880.1 CDS DvMF_2472 NC_011769.1 3117336 3118361 R KEGG: dde:Dde_3205 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II complement(3117336..3118361) Desulfovibrio vulgaris str. 'Miyazaki F' 7174408 YP_002436881.1 CDS DvMF_2473 NC_011769.1 3118416 3119717 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I complement(3118416..3119717) Desulfovibrio vulgaris str. 'Miyazaki F' 7174409 YP_002436882.1 CDS DvMF_2474 NC_011769.1 3120353 3121135 R TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sfu:Sfum_3697 molybdenum ABC transporter periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(3120353..3121135) Desulfovibrio vulgaris str. 'Miyazaki F' 7174410 YP_002436883.1 CDS DvMF_2475 NC_011769.1 3121132 3122016 R PFAM: protein of unknown function UPF0066; KEGG: sfu:Sfum_0270 protein of unknown function UPF0066; hypothetical protein complement(3121132..3122016) Desulfovibrio vulgaris str. 'Miyazaki F' 7174411 YP_002436884.1 CDS DvMF_2476 NC_011769.1 3122330 3123688 D PFAM: integrase family protein; TOBE domain protein; KEGG: dde:Dde_3517 molybdenum-pterin binding domain-containing protein; TOBE domain-containing protein 3122330..3123688 Desulfovibrio vulgaris str. 'Miyazaki F' 7174412 YP_002436885.1 CDS DvMF_2477 NC_011769.1 3124011 3124793 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_3696 ABC transporter; ABC transporter complement(3124011..3124793) Desulfovibrio vulgaris str. 'Miyazaki F' 7174413 YP_002436886.1 CDS DvMF_2478 NC_011769.1 3124793 3125500 R TIGRFAM: molybdate ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sfu:Sfum_3698 molybdate ABC transporter inner membrane protein; molybdate ABC transporter inner membrane protein complement(3124793..3125500) Desulfovibrio vulgaris str. 'Miyazaki F' 7174414 YP_002436887.1 CDS DvMF_2479 NC_011769.1 3125789 3126997 R PFAM: beta-lactamase; flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3195 rubredoxin-oxygen oxidoreductase; beta-lactamase complement(3125789..3126997) Desulfovibrio vulgaris str. 'Miyazaki F' 7174415 YP_002436888.1 CDS DvMF_2480 NC_011769.1 3127311 3127469 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_3194 rubredoxin; rubredoxin-type Fe(Cys)4 protein complement(3127311..3127469) Desulfovibrio vulgaris str. 'Miyazaki F' 7174416 YP_002436889.1 CDS DvMF_2481 NC_011769.1 3127593 3127967 R TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dde:Dde_3193 desulfoferrodoxin; desulfoferrodoxin complement(3127593..3127967) Desulfovibrio vulgaris str. 'Miyazaki F' 7174417 YP_002436890.1 CDS DvMF_2482 NC_011769.1 3128363 3130384 R TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(3128363..3130384) Desulfovibrio vulgaris str. 'Miyazaki F' 7174418 YP_002436891.1 CDS DvMF_2483 NC_011769.1 3130756 3133971 R KEGG: hmo:HM1_1611 sensor histidine kinase, TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase complement(3130756..3133971) Desulfovibrio vulgaris str. 'Miyazaki F' 7174419 YP_002436892.1 CDS DvMF_2484 NC_011769.1 3134244 3137258 R PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: dde:Dde_3191 phosphoribosylformylglycinamidine synthase; phosphoribosylformylglycinamidine synthase complement(3134244..3137258) Desulfovibrio vulgaris str. 'Miyazaki F' 7174420 YP_002436893.1 CDS DvMF_2485 NC_011769.1 3137784 3138614 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sfu:Sfum_0283 ABC transporter; ABC transporter complement(3137784..3138614) Desulfovibrio vulgaris str. 'Miyazaki F' 7174421 YP_002436894.1 CDS DvMF_2486 NC_011769.1 3138605 3139561 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: lip:LI1030 phosphate ABC transporter permease protein; binding-protein-dependent transporters inner membrane component complement(3138605..3139561) Desulfovibrio vulgaris str. 'Miyazaki F' 7174422 YP_002436895.1 CDS DvMF_2487 NC_011769.1 3139558 3140505 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sfu:Sfum_0285 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component complement(3139558..3140505) Desulfovibrio vulgaris str. 'Miyazaki F' 7174423 YP_002436896.1 CDS DvMF_2488 NC_011769.1 3140511 3141353 R TIGRFAM: phosphate binding protein; KEGG: lip:LI1028 phosphate-binding protein; phosphate binding protein complement(3140511..3141353) Desulfovibrio vulgaris str. 'Miyazaki F' 7174424 YP_002436897.1 CDS DvMF_2489 NC_011769.1 3141523 3144033 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_3190 diguanylate cyclase; diguanylate cyclase complement(3141523..3144033) Desulfovibrio vulgaris str. 'Miyazaki F' 7174425 YP_002436898.1 CDS DvMF_2490 NC_011769.1 3144234 3145229 R PFAM: polyprenyl synthetase; KEGG: dde:Dde_3189 trans-hexaprenyltranstransferase; polyprenyl synthetase complement(3144234..3145229) Desulfovibrio vulgaris str. 'Miyazaki F' 7174426 YP_002436899.1 CDS DvMF_2491 NC_011769.1 3145360 3146079 R PFAM: purine or other phosphorylase family 1; KEGG: dde:Dde_3188 hypothetical protein; purine or other phosphorylase family 1 complement(3145360..3146079) Desulfovibrio vulgaris str. 'Miyazaki F' 7174427 YP_002436900.1 CDS DvMF_2492 NC_011769.1 3146175 3146324 R hypothetical protein complement(3146175..3146324) Desulfovibrio vulgaris str. 'Miyazaki F' 7174428 YP_002436901.1 CDS DvMF_2493 NC_011769.1 3146361 3146591 R hypothetical protein complement(3146361..3146591) Desulfovibrio vulgaris str. 'Miyazaki F' 7174429 YP_002436902.1 CDS DvMF_2494 NC_011769.1 3146629 3147945 R TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dde:Dde_3187 UDP-glucose/GDP-mannose dehydrogenase family protein; nucleotide sugar dehydrogenase complement(3146629..3147945) Desulfovibrio vulgaris str. 'Miyazaki F' 7174430 YP_002436903.1 CDS DvMF_2495 NC_011769.1 3148169 3148375 D KEGG: mgm:Mmc1_1575 hypothetical protein; hypothetical protein 3148169..3148375 Desulfovibrio vulgaris str. 'Miyazaki F' 7174431 YP_002436904.1 CDS DvMF_2496 NC_011769.1 3148492 3149670 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_3185 demethylmenaquinone methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase complement(3148492..3149670) Desulfovibrio vulgaris str. 'Miyazaki F' 7174432 YP_002436905.1 CDS DvMF_2497 NC_011769.1 3149677 3149883 R KEGG: dde:Dde_3184 hypothetical protein; hypothetical protein complement(3149677..3149883) Desulfovibrio vulgaris str. 'Miyazaki F' 7174433 YP_002436906.1 CDS DvMF_2498 NC_011769.1 3150431 3151990 R KEGG: dde:Dde_3183 hypothetical protein; hypothetical protein complement(3150431..3151990) Desulfovibrio vulgaris str. 'Miyazaki F' 7174434 YP_002436907.1 CDS DvMF_2499 NC_011769.1 3152356 3152748 R PFAM: cytochrome C class III; KEGG: dde:Dde_3182 cytochrome C3; cytochrome C class III complement(3152356..3152748) Desulfovibrio vulgaris str. 'Miyazaki F' 7174435 YP_002436908.1 CDS DvMF_2500 NC_011769.1 3153038 3153829 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_3181 precorrin-3 methyltransferase; precorrin-3B C(17)-methyltransferase complement(3153038..3153829) Desulfovibrio vulgaris str. 'Miyazaki F' 7174436 YP_002436909.1 CDS DvMF_2501 NC_011769.1 3153826 3155109 R PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dde:Dde_3181 precorrin-3 methyltransferase; cobalamin (vitamin B12) biosynthesis protein CbiG complement(3153826..3155109) Desulfovibrio vulgaris str. 'Miyazaki F' 7174437 YP_002436910.1 CDS DvMF_2502 NC_011769.1 3155303 3156580 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(3155303..3156580) Desulfovibrio vulgaris str. 'Miyazaki F' 7174438 YP_002436911.1 CDS DvMF_2503 NC_011769.1 3156882 3157382 R SMART: regulatory protein AsnC/Lrp family; KEGG: dde:Dde_3179 AsnC family transcriptional regulator; AsnC family transcriptional regulator complement(3156882..3157382) Desulfovibrio vulgaris str. 'Miyazaki F' 7174439 YP_002436912.1 CDS DvMF_2505 NC_011769.1 3158862 3159257 R PFAM: protein of unknown function UPF0047; KEGG: dde:Dde_3175 hypothetical protein; hypothetical protein complement(3158862..3159257) Desulfovibrio vulgaris str. 'Miyazaki F' 7174441 YP_002436913.1 CDS DvMF_2506 NC_011769.1 3159706 3161658 D KEGG: dde:Dde_3173 selenocysteine-specific translation elongation factor SelB; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; selenocysteine-specific translation elongation factor 3159706..3161658 Desulfovibrio vulgaris str. 'Miyazaki F' 7174442 YP_002436914.1 CDS DvMF_2507 NC_011769.1 3161811 3162074 R KEGG: dde:Dde_3169 hypothetical protein; hypothetical protein complement(3161811..3162074) Desulfovibrio vulgaris str. 'Miyazaki F' 7174443 YP_002436915.1 CDS DvMF_2508 NC_011769.1 3162451 3164721 R KEGG: dde:Dde_3167 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(3162451..3164721) Desulfovibrio vulgaris str. 'Miyazaki F' 7174444 YP_002436916.1 CDS rpsO NC_011769.1 3164952 3165221 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3164952..3165221) Desulfovibrio vulgaris str. 'Miyazaki F' 7174445 YP_002436917.1 CDS DvMF_2510 NC_011769.1 3165245 3166171 R TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: dde:Dde_3165 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B complement(3165245..3166171) Desulfovibrio vulgaris str. 'Miyazaki F' 7174446 YP_002436918.1 CDS DvMF_2511 NC_011769.1 3166177 3167169 R PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein; phosphoesterase RecJ domain-containing protein complement(3166177..3167169) Desulfovibrio vulgaris str. 'Miyazaki F' 7174447 YP_002436919.1 CDS DvMF_2512 NC_011769.1 3167491 3167799 R PFAM: protein of unknown function DUF503; KEGG: dde:Dde_3163 hypothetical protein; hypothetical protein complement(3167491..3167799) Desulfovibrio vulgaris str. 'Miyazaki F' 7174448 YP_002436920.1 CDS infB NC_011769.1 3167905 3171144 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3167905..3171144) Desulfovibrio vulgaris str. 'Miyazaki F' 7174449 YP_002436921.1 CDS DvMF_2514 NC_011769.1 3171141 3171392 R KEGG: ace:Acel_1516 protein of unknown function DUF448; hypothetical protein complement(3171141..3171392) Desulfovibrio vulgaris str. 'Miyazaki F' 7174450 YP_002436922.1 CDS nusA NC_011769.1 3171400 3172731 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3171400..3172731) Desulfovibrio vulgaris str. 'Miyazaki F' 7174451 YP_002436923.1 CDS DvMF_2516 NC_011769.1 3172755 3173435 R PFAM: protein of unknown function DUF150; KEGG: dde:Dde_3160 hypothetical protein; hypothetical protein complement(3172755..3173435) Desulfovibrio vulgaris str. 'Miyazaki F' 7174452 YP_002436924.1 CDS DvMF_2517 NC_011769.1 3173879 3174658 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3159 flagellar basal-body rod protein; hypothetical protein 3173879..3174658 Desulfovibrio vulgaris str. 'Miyazaki F' 7174453 YP_002436925.1 CDS flgG NC_011769.1 3174957 3175739 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 3174957..3175739 Desulfovibrio vulgaris str. 'Miyazaki F' 7174454 YP_002436926.1 CDS DvMF_2519 NC_011769.1 3175941 3176981 D TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: dde:Dde_3157 FlgA family protein; flagella basal body P-ring formation protein FlgA 3175941..3176981 Desulfovibrio vulgaris str. 'Miyazaki F' 7174455 YP_002436927.1 CDS flgH NC_011769.1 3177039 3177755 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 3177039..3177755 Desulfovibrio vulgaris str. 'Miyazaki F' 7174456 YP_002436928.1 CDS flgI NC_011769.1 3178599 3179723 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 3178599..3179723 Desulfovibrio vulgaris str. 'Miyazaki F' 7174457 YP_002436929.1 CDS DvMF_2522 NC_011769.1 3179931 3181748 D PFAM: peptidase M23; KEGG: dde:Dde_3154 membrane proteins, metalloendopeptidase-like; peptidase M23 3179931..3181748 Desulfovibrio vulgaris str. 'Miyazaki F' 7174458 YP_002436930.1 CDS DvMF_2523 NC_011769.1 3181753 3182217 D PFAM: FlgN family protein; KEGG: dde:Dde_3153 hypothetical protein; FlgN family protein 3181753..3182217 Desulfovibrio vulgaris str. 'Miyazaki F' 7174459 YP_002436931.1 CDS DvMF_2524 NC_011769.1 3182218 3184326 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3152 flagellar hook-associated protein; flagellar hook-associated protein FlgK 3182218..3184326 Desulfovibrio vulgaris str. 'Miyazaki F' 7174460 YP_002436932.1 CDS DvMF_2525 NC_011769.1 3184345 3185868 D TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: dde:Dde_3151 flagellar hook-associated protein FlgL; flagellar hook-associated protein 3 3184345..3185868 Desulfovibrio vulgaris str. 'Miyazaki F' 7174461 YP_002436933.1 CDS DvMF_2526 NC_011769.1 3185881 3186120 D PFAM: carbon storage regulator; KEGG: dde:Dde_3150 carbon storage regulator; carbon storage regulator CsrA 3185881..3186120 Desulfovibrio vulgaris str. 'Miyazaki F' 7174462 YP_002436934.1 CDS DvMF_2527 NC_011769.1 3186096 3186647 D binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 3186096..3186647 Desulfovibrio vulgaris str. 'Miyazaki F' 7174463 YP_002436935.1 CDS DvMF_2528 NC_011769.1 3186814 3188553 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sfu:Sfum_1010 transcriptional regulator, NifA subfamily, fis family; Fis family transcriptional regulator complement(3186814..3188553) Desulfovibrio vulgaris str. 'Miyazaki F' 7174464 YP_002436936.1 CDS DvMF_2529 NC_011769.1 3188885 3191479 R PFAM: MscS Mechanosensitive ion channel; KEGG: lip:LI1173 3264: small-conductance mechanosensitive channel; mechanosensitive ion channel MscS complement(3188885..3191479) Desulfovibrio vulgaris str. 'Miyazaki F' 7174465 YP_002436937.1 CDS DvMF_2530 NC_011769.1 3191904 3193049 D KEGG: dde:Dde_0292 hypothetical protein; hypothetical protein 3191904..3193049 Desulfovibrio vulgaris str. 'Miyazaki F' 7174466 YP_002436938.1 CDS DvMF_2531 NC_011769.1 3193053 3194360 D KEGG: dde:Dde_0291 cytochrome bd-type quinol oxidase subunit 1-like; cytochrome bd-type quinol oxidase subunit 1-like protein 3193053..3194360 Desulfovibrio vulgaris str. 'Miyazaki F' 7174467 YP_002436939.1 CDS DvMF_2532 NC_011769.1 3194419 3196350 D PFAM: cytochrome C class III; KEGG: dde:Dde_0561 cytochrome C family protein; cytochrome C class III 3194419..3196350 Desulfovibrio vulgaris str. 'Miyazaki F' 7174468 YP_002436940.1 CDS DvMF_2533 NC_011769.1 3196674 3199706 D Contains selenocysteine; TIGRFAM: formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dde:Dde_0813 formate dehydrogenase subunit alpha; formate dehydrogenase subunit alpha 3196674..3199706 Desulfovibrio vulgaris str. 'Miyazaki F' 7174469 YP_002436941.1 CDS DvMF_2534 NC_011769.1 3199714 3200466 D KEGG: dde:Dde_3514 formate dehydrogenase subunit beta; formate dehydrogenase subunit beta 3199714..3200466 Desulfovibrio vulgaris str. 'Miyazaki F' 7174470 YP_002436942.1 CDS DvMF_2535 NC_011769.1 3200580 3201257 R PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: azo:azo2986 methyltransferase; methyltransferase type 11 complement(3200580..3201257) Desulfovibrio vulgaris str. 'Miyazaki F' 7174471 YP_002436943.1 CDS DvMF_2536 NC_011769.1 3201285 3202718 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3234 two component Fis family transcriptional regulator; Fis family transcriptional regulator complement(3201285..3202718) Desulfovibrio vulgaris str. 'Miyazaki F' 7174472 YP_002436944.1 CDS DvMF_2537 NC_011769.1 3202729 3206397 R KEGG: gsu:GSU0842 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase complement(3202729..3206397) Desulfovibrio vulgaris str. 'Miyazaki F' 7174473 YP_002436945.1 CDS DvMF_2538 NC_011769.1 3206740 3207027 D KEGG: dde:Dde_0976 hypothetical protein; hypothetical protein 3206740..3207027 Desulfovibrio vulgaris str. 'Miyazaki F' 7174474 YP_002436946.1 CDS DvMF_2539 NC_011769.1 3207324 3209369 D KEGG: mac:MA1270 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 3207324..3209369 Desulfovibrio vulgaris str. 'Miyazaki F' 7174475 YP_002436947.1 CDS DvMF_2540 NC_011769.1 3209426 3209878 D PFAM: response regulator receiver; KEGG: mag:amb2979 FOG: CheY-like receiver; response regulator receiver protein 3209426..3209878 Desulfovibrio vulgaris str. 'Miyazaki F' 7174476 YP_002436948.1 CDS DvMF_2541 NC_011769.1 3210013 3212637 D KEGG: pca:Pcar_0053 two component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 3210013..3212637 Desulfovibrio vulgaris str. 'Miyazaki F' 7174477 YP_002436949.1 CDS DvMF_2542 NC_011769.1 3212733 3214526 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2159 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3212733..3214526 Desulfovibrio vulgaris str. 'Miyazaki F' 7174478 YP_002436950.1 CDS DvMF_2543 NC_011769.1 3214600 3214965 D PFAM: response regulator receiver; KEGG: lch:Lcho_0734 response regulator receiver protein; response regulator receiver protein 3214600..3214965 Desulfovibrio vulgaris str. 'Miyazaki F' 7174479 YP_002436951.1 CDS DvMF_2544 NC_011769.1 3214962 3216506 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: glo:Glov_0589 multi-sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 3214962..3216506 Desulfovibrio vulgaris str. 'Miyazaki F' 7174480 YP_002436952.1 CDS DvMF_2545 NC_011769.1 3216844 3217653 D PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mex:Mext_3509 metal-dependent phosphohydrolase HD sub domain; metal dependent phosphohydrolase 3216844..3217653 Desulfovibrio vulgaris str. 'Miyazaki F' 7174481 YP_002436953.1 CDS DvMF_2546 NC_011769.1 3217923 3218381 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0235 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 3217923..3218381 Desulfovibrio vulgaris str. 'Miyazaki F' 7174482 YP_002436954.1 CDS DvMF_2547 NC_011769.1 3218793 3219587 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_3719 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 3218793..3219587 Desulfovibrio vulgaris str. 'Miyazaki F' 7174483 YP_002436955.1 CDS DvMF_2548 NC_011769.1 3219640 3222225 D KEGG: dde:Dde_3718 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 3219640..3222225 Desulfovibrio vulgaris str. 'Miyazaki F' 7174484 YP_002436956.1 CDS DvMF_2549 NC_011769.1 3222222 3223562 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3717 response regulator receiver sensor signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 3222222..3223562 Desulfovibrio vulgaris str. 'Miyazaki F' 7174485 YP_002436957.1 CDS DvMF_2550 NC_011769.1 3223559 3225616 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase complement(3223559..3225616) Desulfovibrio vulgaris str. 'Miyazaki F' 7174486 YP_002436958.1 CDS DvMF_2551 NC_011769.1 3225890 3226858 R PFAM: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein; response regulator receiver protein complement(3225890..3226858) Desulfovibrio vulgaris str. 'Miyazaki F' 7174487 YP_002436959.1 CDS DvMF_2552 NC_011769.1 3226974 3227891 R PFAM: UspA domain protein; KEGG: dde:Dde_3712 universal stress protein; UspA domain-containing protein complement(3226974..3227891) Desulfovibrio vulgaris str. 'Miyazaki F' 7174488 YP_002436960.1 CDS DvMF_2553 NC_011769.1 3227897 3228463 R KEGG: dde:Dde_3711 hypothetical protein; hypothetical protein complement(3227897..3228463) Desulfovibrio vulgaris str. 'Miyazaki F' 7174489 YP_002436961.1 CDS DvMF_2554 NC_011769.1 3228549 3229013 R KEGG: dde:Dde_3710 acidic cytochrome C3; acidic cytochrome C3 complement(3228549..3229013) Desulfovibrio vulgaris str. 'Miyazaki F' 7174490 YP_002436962.1 CDS DvMF_2555 NC_011769.1 3229034 3230371 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_3709 ferredoxin 4Fe-4S; 4Fe-4S ferredoxin complement(3229034..3230371) Desulfovibrio vulgaris str. 'Miyazaki F' 7174491 YP_002436963.1 CDS DvMF_2556 NC_011769.1 3230467 3231126 R KEGG: dde:Dde_3708 hypothetical protein; hypothetical protein complement(3230467..3231126) Desulfovibrio vulgaris str. 'Miyazaki F' 7174492 YP_002436964.1 CDS DvMF_2557 NC_011769.1 3231147 3232502 R KEGG: dde:Dde_3707 hypothetical protein; hypothetical protein complement(3231147..3232502) Desulfovibrio vulgaris str. 'Miyazaki F' 7174493 YP_002436965.1 CDS DvMF_2558 NC_011769.1 3233135 3234550 D KEGG: dde:Dde_1011 hypothetical protein; hypothetical protein 3233135..3234550 Desulfovibrio vulgaris str. 'Miyazaki F' 7174494 YP_002436966.1 CDS DvMF_2559 NC_011769.1 3235070 3235828 D hypothetical protein 3235070..3235828 Desulfovibrio vulgaris str. 'Miyazaki F' 7174495 YP_002436967.1 CDS DvMF_2560 NC_011769.1 3236072 3237073 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bmj:BMULJ_02621 AraC subfamily transcriptional regulator; AraC family transcriptional regulator 3236072..3237073 Desulfovibrio vulgaris str. 'Miyazaki F' 7174496 YP_002436968.1 CDS DvMF_2561 NC_011769.1 3237191 3237337 D KEGG: ptm:GSPATT00013277001 hypothetical protein; hypothetical protein 3237191..3237337 Desulfovibrio vulgaris str. 'Miyazaki F' 7174497 YP_002436969.1 CDS DvMF_2562 NC_011769.1 3237334 3237930 D PFAM: ThiJ/PfpI domain protein; KEGG: gur:Gura_3528 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 3237334..3237930 Desulfovibrio vulgaris str. 'Miyazaki F' 7174498 YP_002436970.1 CDS DvMF_2563 NC_011769.1 3238334 3238870 R PFAM: protein of unknown function DUF721; KEGG: dde:Dde_3136 hypothetical protein; hypothetical protein complement(3238334..3238870) Desulfovibrio vulgaris str. 'Miyazaki F' 7174500 YP_002436971.1 CDS DvMF_2564 NC_011769.1 3239471 3241990 D TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3239471..3241990 Desulfovibrio vulgaris str. 'Miyazaki F' 7174501 YP_002436972.1 CDS DvMF_2565 NC_011769.1 3242150 3243184 D KEGG: cch:Cag_0501 periplasmic phosphate binding protein; phosphate ABC transporter substrate-binding protein 3242150..3243184 Desulfovibrio vulgaris str. 'Miyazaki F' 7174502 YP_002436973.1 CDS DvMF_2566 NC_011769.1 3243276 3244520 D TIGRFAM: phosphate ABC transporter inner membrane protein PstC; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cch:Cag_0500 phosphate ABC transporter permease PstC; phosphate ABC transporter permease 3243276..3244520 Desulfovibrio vulgaris str. 'Miyazaki F' 7174503 YP_002436974.1 CDS DvMF_2567 NC_011769.1 3244529 3245698 D TIGRFAM: phosphate ABC transporter inner membrane protein PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: csa:Csal_1478 phosphate transporter permease 2; phosphate ABC transporter permease 3244529..3245698 Desulfovibrio vulgaris str. 'Miyazaki F' 7174504 YP_002436975.1 CDS DvMF_2568 NC_011769.1 3245796 3247028 R PFAM: filamentation induced by cAMP protein Fic; KEGG: dol:Dole_1842 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(3245796..3247028) Desulfovibrio vulgaris str. 'Miyazaki F' 7174505 YP_002436976.1 CDS DvMF_2569 NC_011769.1 3247690 3248673 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: dde:Dde_0483 ATPase; ATPase 3247690..3248673 Desulfovibrio vulgaris str. 'Miyazaki F' 7174506 YP_002436977.1 CDS DvMF_2570 NC_011769.1 3248682 3250268 D KEGG: dde:Dde_0484 hypothetical protein; hypothetical protein 3248682..3250268 Desulfovibrio vulgaris str. 'Miyazaki F' 7174507 YP_002436978.1 CDS DvMF_2571 NC_011769.1 3250271 3250729 D KEGG: dde:Dde_0485 hypothetical protein; hypothetical protein 3250271..3250729 Desulfovibrio vulgaris str. 'Miyazaki F' 7174508 YP_002436979.1 CDS DvMF_2572 NC_011769.1 3251081 3252637 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: mxa:MXAN_0172 sigma-54 dependent DNA-binding response regulator; Fis family transcriptional regulator complement(3251081..3252637) Desulfovibrio vulgaris str. 'Miyazaki F' 7174509 YP_002436980.1 CDS DvMF_2573 NC_011769.1 3252637 3254838 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: psa:PST_4054 sensory box histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(3252637..3254838) Desulfovibrio vulgaris str. 'Miyazaki F' 7174510 YP_002436981.1 CDS DvMF_2574 NC_011769.1 3254835 3255962 R PFAM: osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: mxa:MXAN_0167 osmosensitive K+ channel His kinase sensor domain/universal stress domain protein; osmosensitive K channel His kinase sensor complement(3254835..3255962) Desulfovibrio vulgaris str. 'Miyazaki F' 7174511 YP_002436982.1 CDS DvMF_2575 NC_011769.1 3256314 3256907 R KEGG: pna:Pnap_3602 potassium-transporting ATPase, C subunit; TIGRFAM: potassium ABC transporter ATPase; PFAM: K transporting ATPase KdpC subunit; potassium ABC transporter ATPase complement(3256314..3256907) Desulfovibrio vulgaris str. 'Miyazaki F' 7174512 YP_002436983.1 CDS DvMF_2576 NC_011769.1 3256929 3259025 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase subunit beta; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: aba:acid345_0511 potassium-translocating P-type ATPase subunit beta; K+-transporting ATPase subunit beta complement(3256929..3259025) Desulfovibrio vulgaris str. 'Miyazaki F' 7174513 YP_002436984.1 CDS DvMF_2577 NC_011769.1 3259050 3260888 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase A complement(3259050..3260888) Desulfovibrio vulgaris str. 'Miyazaki F' 7174514 YP_002436985.1 CDS DvMF_2578 NC_011769.1 3261114 3261203 R TIGRFAM: K+-transporting ATPase, F subunit; PFAM: K+transporting ATPase F subunit; K+-transporting ATPase subunit F complement(3261114..3261203) Desulfovibrio vulgaris str. 'Miyazaki F' 7174515 YP_002436986.1 CDS DvMF_2579 NC_011769.1 3261685 3262623 D PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: dde:Dde_3135 ArsR family transcriptional regulator; ArsR family transcriptional regulator 3261685..3262623 Desulfovibrio vulgaris str. 'Miyazaki F' 7174516 YP_002436987.1 CDS DvMF_2580 NC_011769.1 3263021 3264460 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 3263021..3264460 Desulfovibrio vulgaris str. 'Miyazaki F' 7174517 YP_002436988.1 CDS DvMF_2581 NC_011769.1 3264547 3265524 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rxy:Rxyl_2873 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(3264547..3265524) Desulfovibrio vulgaris str. 'Miyazaki F' 7174518 YP_002436989.1 CDS DvMF_2582 NC_011769.1 3265869 3266933 D with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 3265869..3266933 Desulfovibrio vulgaris str. 'Miyazaki F' 7174519 YP_002436990.1 CDS DvMF_2583 NC_011769.1 3267361 3267993 D TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: dde:Dde_1179 DAK2 domain-containing protein; dihydroxyacetone kinase subunit DhaL 3267361..3267993 Desulfovibrio vulgaris str. 'Miyazaki F' 7174520 YP_002436991.1 CDS DvMF_2584 NC_011769.1 3267997 3270537 D KEGG: dde:Dde_1180 phosphoenolpyruvate--protein phosphotransferase; TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; dihydroxyacetone kinase, phosphotransfer subunit; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; PTS system fructose subfamily IIA component; PEP-utilising protein mobile region; PEP-utilising protein domain protein; phosphoenolpyruvate-protein phosphotransferase 3267997..3270537 Desulfovibrio vulgaris str. 'Miyazaki F' 7174521 YP_002436992.1 CDS DvMF_2585 NC_011769.1 3270985 3271296 R PFAM: anti-sigma-28 factor FlgM family protein; KEGG: dde:Dde_0638 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM complement(3270985..3271296) Desulfovibrio vulgaris str. 'Miyazaki F' 7174522 YP_002436993.1 CDS DvMF_2586 NC_011769.1 3271343 3271759 R KEGG: dde:Dde_0639 hypothetical protein; hypothetical protein complement(3271343..3271759) Desulfovibrio vulgaris str. 'Miyazaki F' 7174523 YP_002436994.1 CDS DvMF_2587 NC_011769.1 3272312 3272962 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3272312..3272962 Desulfovibrio vulgaris str. 'Miyazaki F' 7174524 YP_002436995.1 CDS DvMF_2588 NC_011769.1 3273040 3273564 D PFAM: phosphatidylglycerophosphatase A; KEGG: dde:Dde_0641 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A 3273040..3273564 Desulfovibrio vulgaris str. 'Miyazaki F' 7174525 YP_002436996.1 CDS DvMF_2589 NC_011769.1 3273801 3274532 R PFAM: lysine exporter (LYSE/YGGA); KEGG: rpc:RPC_0776 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(3273801..3274532) Desulfovibrio vulgaris str. 'Miyazaki F' 7174526 YP_002436997.1 CDS DvMF_2590 NC_011769.1 3275128 3275523 R PFAM: response regulator receiver; KEGG: glo:Glov_1742 response regulator receiver protein; response regulator receiver protein complement(3275128..3275523) Desulfovibrio vulgaris str. 'Miyazaki F' 7174527 YP_002436998.1 CDS DvMF_2591 NC_011769.1 3275689 3276141 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: dde:Dde_0647 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator complement(3275689..3276141) Desulfovibrio vulgaris str. 'Miyazaki F' 7174528 YP_002436999.1 CDS DvMF_2592 NC_011769.1 3276251 3276637 R PFAM: response regulator receiver; KEGG: dde:Dde_3714 response regulator receiver domain-containing protein; Fis family transcriptional regulator complement(3276251..3276637) Desulfovibrio vulgaris str. 'Miyazaki F' 7174529 YP_002437000.1 CDS DvMF_2593 NC_011769.1 3276808 3278199 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_0648 hmc operon protein 6; hypothetical protein complement(3276808..3278199) Desulfovibrio vulgaris str. 'Miyazaki F' 7174530 YP_002437001.1 CDS DvMF_2594 NC_011769.1 3278256 3278936 R KEGG: dde:Dde_0649 hmc operon protein 5; hmc operon protein 5 complement(3278256..3278936) Desulfovibrio vulgaris str. 'Miyazaki F' 7174531 YP_002437002.1 CDS DvMF_2595 NC_011769.1 3279077 3279214 R KEGG: dde:Dde_0650 hmc operon protein 4; hmc operon protein 4 complement(3279077..3279214) Desulfovibrio vulgaris str. 'Miyazaki F' 7174532 YP_002437003.1 CDS DvMF_2596 NC_011769.1 3279234 3280400 R PFAM: polysulphide reductase NrfD; KEGG: dde:Dde_0651 hmc operon protein 3; polysulphide reductase NrfD complement(3279234..3280400) Desulfovibrio vulgaris str. 'Miyazaki F' 7174533 YP_002437004.1 CDS DvMF_2597 NC_011769.1 3280402 3281520 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0652 hypothetical protein; 4Fe-4S ferredoxin complement(3280402..3281520) Desulfovibrio vulgaris str. 'Miyazaki F' 7174534 YP_002437005.1 CDS DvMF_2598 NC_011769.1 3281542 3283212 R PFAM: cytochrome C class III; KEGG: dde:Dde_0653 high-molecular-weight cytochrome C; cytochrome C class III complement(3281542..3283212) Desulfovibrio vulgaris str. 'Miyazaki F' 7174535 YP_002437006.1 CDS DvMF_2599 NC_011769.1 3283978 3284826 D PFAM: xylose isomerase; KEGG: dde:Dde_0655 AP endonuclease; xylose isomerase 3283978..3284826 Desulfovibrio vulgaris str. 'Miyazaki F' 7174536 YP_002437007.1 CDS DvMF_2600 NC_011769.1 3284950 3285975 R PFAM: beta-lactamase; KEGG: bpt:Bpet0311 metallo-beta-lactamase superfamily protein; beta-lactamase complement(3284950..3285975) Desulfovibrio vulgaris str. 'Miyazaki F' 7174537 YP_002437008.1 CDS DvMF_2601 NC_011769.1 3286232 3287632 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_0879 two component Fis family transcriptional regulator; Fis family transcriptional regulator complement(3286232..3287632) Desulfovibrio vulgaris str. 'Miyazaki F' 7174538 YP_002437009.1 CDS DvMF_2602 NC_011769.1 3287629 3290469 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_0878 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3287629..3290469) Desulfovibrio vulgaris str. 'Miyazaki F' 7174539 YP_002437010.1 CDS DvMF_2603 NC_011769.1 3290980 3292089 D PFAM: conserved hypothetical protein; KEGG: drm:Dred_1866 conserved hypothetical protein 698; hypothetical protein 3290980..3292089 Desulfovibrio vulgaris str. 'Miyazaki F' 7174540 YP_002437011.1 CDS DvMF_2604 NC_011769.1 3292114 3292509 D KEGG: cbd:CBUD_1070 biotin carboxylase; hypothetical protein 3292114..3292509 Desulfovibrio vulgaris str. 'Miyazaki F' 7174541 YP_002437012.1 CDS DvMF_2605 NC_011769.1 3292666 3293109 D PFAM: UspA domain protein; KEGG: pna:Pnap_2298 UspA domain protein; UspA domain-containing protein 3292666..3293109 Desulfovibrio vulgaris str. 'Miyazaki F' 7174542 YP_002437013.1 CDS DvMF_2606 NC_011769.1 3293623 3294069 R TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: cvi:CV_1360 large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein complement(3293623..3294069) Desulfovibrio vulgaris str. 'Miyazaki F' 7174543 YP_002437014.1 CDS DvMF_2607 NC_011769.1 3294740 3295858 D PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0612 high-affinity branched chain amino acid ABC transporter periplasmic branched chain amino acid-binding protein; extracellular ligand-binding receptor 3294740..3295858 Desulfovibrio vulgaris str. 'Miyazaki F' 7174544 YP_002437015.1 CDS DvMF_2608 NC_011769.1 3295961 3296869 D PFAM: inner-membrane translocator; KEGG: dde:Dde_0611 high-affinity branched-chain amino acid ABC transporter permease; inner-membrane translocator 3295961..3296869 Desulfovibrio vulgaris str. 'Miyazaki F' 7174545 YP_002437016.1 CDS DvMF_2609 NC_011769.1 3297151 3298398 D PFAM: inner-membrane translocator; KEGG: sat:SYN_00787 branched-chain amino acid transporter permease; inner-membrane translocator 3297151..3298398 Desulfovibrio vulgaris str. 'Miyazaki F' 7174546 YP_002437017.1 CDS DvMF_2610 NC_011769.1 3298398 3299210 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0609 ATPase; ABC transporter 3298398..3299210 Desulfovibrio vulgaris str. 'Miyazaki F' 7174547 YP_002437018.1 CDS DvMF_2611 NC_011769.1 3299203 3299907 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0608 ATPase; ABC transporter 3299203..3299907 Desulfovibrio vulgaris str. 'Miyazaki F' 7174548 YP_002437019.1 CDS DvMF_2612 NC_011769.1 3300432 3301799 R PFAM: pyruvate carboxyltransferase; KEGG: met:M446_3580 homocitrate synthase; pyruvate carboxyltransferase complement(3300432..3301799) Desulfovibrio vulgaris str. 'Miyazaki F' 7174549 YP_002437020.1 CDS nifH NC_011769.1 3302404 3303234 D nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; nitrogenase reductase 3302404..3303234 Desulfovibrio vulgaris str. 'Miyazaki F' 7174550 YP_002437021.1 CDS DvMF_2614 NC_011769.1 3303336 3303686 D PFAM: nitrogen regulatory protein P-II; KEGG: sfu:Sfum_1018 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3303336..3303686 Desulfovibrio vulgaris str. 'Miyazaki F' 7174551 YP_002437022.1 CDS DvMF_2615 NC_011769.1 3303683 3304057 D PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1345 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3303683..3304057 Desulfovibrio vulgaris str. 'Miyazaki F' 7174552 YP_002437023.1 CDS DvMF_2616 NC_011769.1 3304289 3305923 D KEGG: sfu:Sfum_1016 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit alpha 3304289..3305923 Desulfovibrio vulgaris str. 'Miyazaki F' 7174553 YP_002437024.1 CDS DvMF_2617 NC_011769.1 3305945 3307321 D KEGG: sfu:Sfum_1015 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit beta 3305945..3307321 Desulfovibrio vulgaris str. 'Miyazaki F' 7174554 YP_002437025.1 CDS DvMF_2618 NC_011769.1 3307621 3308880 D PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM protein; KEGG: cpc:Cpar_1626 nitrogenase cofactor biosynthesis protein NifB; dinitrogenase iron-molybdenum cofactor biosynthesis protein 3307621..3308880 Desulfovibrio vulgaris str. 'Miyazaki F' 7174555 YP_002437026.1 CDS DvMF_2619 NC_011769.1 3308905 3309207 D KEGG: cpb:Cphamn1_1759 ferredoxin 2Fe-2S; ferredoxin 2Fe-2S 3308905..3309207 Desulfovibrio vulgaris str. 'Miyazaki F' 7174556 YP_002437027.1 CDS DvMF_2620 NC_011769.1 3309366 3310790 D functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE 3309366..3310790 Desulfovibrio vulgaris str. 'Miyazaki F' 7174557 YP_002437028.1 CDS DvMF_2621 NC_011769.1 3310801 3312417 D PFAM: oxidoreductase/nitrogenase component 1; KEGG: sfu:Sfum_1012 nitrogenase; nitrogenase 3310801..3312417 Desulfovibrio vulgaris str. 'Miyazaki F' 7174558 YP_002437029.1 CDS DvMF_2622 NC_011769.1 3312435 3313718 D KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; nitrogenase cofactor biosynthesis protein NifB 3312435..3313718 Desulfovibrio vulgaris str. 'Miyazaki F' 7174559 YP_002437030.1 CDS DvMF_2623 NC_011769.1 3313975 3314430 R PFAM: rhodanese; KEGG: mem:Memar_2054 rhodanese domain protein; rhodanese complement(3313975..3314430) Desulfovibrio vulgaris str. 'Miyazaki F' 7174560 YP_002437031.1 CDS DvMF_2624 NC_011769.1 3314777 3315259 D TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit; KEGG: dde:Dde_3130 acetolactate synthase, small subunit; acetolactate synthase small subunit 3314777..3315259 Desulfovibrio vulgaris str. 'Miyazaki F' 7174561 YP_002437032.1 CDS DvMF_2625 NC_011769.1 3315507 3316481 D PFAM: phosphate acetyl/butaryl transferase; KEGG: dde:Dde_3129 phosphate butyryltransferase; phosphate butyryltransferase 3315507..3316481 Desulfovibrio vulgaris str. 'Miyazaki F' 7174562 YP_002437033.1 CDS DvMF_2626 NC_011769.1 3316532 3317893 D catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 3316532..3317893 Desulfovibrio vulgaris str. 'Miyazaki F' 7174563 YP_002437034.1 CDS DvMF_2627 NC_011769.1 3318289 3318849 D PFAM: regulatory protein TetR; KEGG: dde:Dde_3127 TetR family transcriptional regulator; TetR family transcriptional regulator 3318289..3318849 Desulfovibrio vulgaris str. 'Miyazaki F' 7174564 YP_002437035.1 CDS DvMF_2628 NC_011769.1 3319089 3320864 R KEGG: dde:Dde_3125 hypothetical protein; hypothetical protein complement(3319089..3320864) Desulfovibrio vulgaris str. 'Miyazaki F' 7174565 YP_002437036.1 CDS DvMF_2629 NC_011769.1 3321102 3321518 R PFAM: cupin; KEGG: mba:Mbar_A1827 hypothetical protein; cupin complement(3321102..3321518) Desulfovibrio vulgaris str. 'Miyazaki F' 7174566 YP_002437037.1 CDS DvMF_2630 NC_011769.1 3321715 3324138 R KEGG: dde:Dde_3124 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SMART: RNA binding S1 domain protein; penicillin-binding protein complement(3321715..3324138) Desulfovibrio vulgaris str. 'Miyazaki F' 7174567 YP_002437038.1 CDS DvMF_2631 NC_011769.1 3324150 3324980 R KEGG: dde:Dde_3123 hypothetical protein; hypothetical protein complement(3324150..3324980) Desulfovibrio vulgaris str. 'Miyazaki F' 7174568 YP_002437039.1 CDS DvMF_2632 NC_011769.1 3324982 3326772 R KEGG: dde:Dde_3122 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; dolichyl-phosphate-mannose-protein mannosyltransferase family protein complement(3324982..3326772) Desulfovibrio vulgaris str. 'Miyazaki F' 7174569 YP_002437040.1 CDS DvMF_2633 NC_011769.1 3327308 3328690 R PFAM: aldehyde dehydrogenase_; KEGG: dsy:DSY1102 hypothetical protein; aldehyde dehydrogenase complement(3327308..3328690) Desulfovibrio vulgaris str. 'Miyazaki F' 7174570 YP_002437041.1 CDS DvMF_2634 NC_011769.1 3329371 3330762 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_3119 hypothetical protein; FAD dependent oxidoreductase 3329371..3330762 Desulfovibrio vulgaris str. 'Miyazaki F' 7174571 YP_002437042.1 CDS DvMF_2635 NC_011769.1 3331033 3331260 D KEGG: dde:Dde_3118 hypothetical protein; hypothetical protein 3331033..3331260 Desulfovibrio vulgaris str. 'Miyazaki F' 7174572 YP_002437043.1 CDS DvMF_2636 NC_011769.1 3331467 3332336 R KEGG: dde:Dde_3117 hypothetical protein; hypothetical protein complement(3331467..3332336) Desulfovibrio vulgaris str. 'Miyazaki F' 7174573 YP_002437044.1 CDS DvMF_2637 NC_011769.1 3333700 3335124 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: mag:amb3301 response regulator; diguanylate cyclase with extracellular sensor 3333700..3335124 Desulfovibrio vulgaris str. 'Miyazaki F' 7174575 YP_002437045.1 CDS DvMF_2638 NC_011769.1 3335161 3336594 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: bvi:Bcep1808_4142 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(3335161..3336594) Desulfovibrio vulgaris str. 'Miyazaki F' 7174576 YP_002437046.1 CDS DvMF_2639 NC_011769.1 3337135 3337593 D KEGG: dde:Dde_1333 hypothetical protein; hypothetical protein 3337135..3337593 Desulfovibrio vulgaris str. 'Miyazaki F' 7174577 YP_002437047.1 CDS DvMF_2640 NC_011769.1 3337856 3340723 D KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 3337856..3340723 Desulfovibrio vulgaris str. 'Miyazaki F' 7174578 YP_002437048.1 CDS tatA NC_011769.1 3340971 3341144 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 3340971..3341144 Desulfovibrio vulgaris str. 'Miyazaki F' 7174579 YP_002437049.1 CDS DvMF_2642 NC_011769.1 3341320 3342693 R KEGG: dde:Dde_3102 hypothetical protein; hypothetical protein complement(3341320..3342693) Desulfovibrio vulgaris str. 'Miyazaki F' 7174580 YP_002437050.1 CDS DvMF_2643 NC_011769.1 3343209 3344381 D PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_3100 response regulator receiver (CheY-like) modulated CheW protein; chemotaxis protein CheW 3343209..3344381 Desulfovibrio vulgaris str. 'Miyazaki F' 7174581 YP_002437051.1 CDS DvMF_2644 NC_011769.1 3345182 3347155 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; SMART: ATPase AAA; KEGG: dde:Dde_3097 two component Fis family transcriptional regulator; Fis family transcriptional regulator complement(3345182..3347155) Desulfovibrio vulgaris str. 'Miyazaki F' 7174582 YP_002437052.1 CDS DvMF_2645 NC_011769.1 3347266 3348558 R PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase; peptidase U32 complement(3347266..3348558) Desulfovibrio vulgaris str. 'Miyazaki F' 7174583 YP_002437053.1 CDS DvMF_2646 NC_011769.1 3348664 3349548 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dde:Dde_3094 phosphoesterase PHP-like; PHP domain-containing protein complement(3348664..3349548) Desulfovibrio vulgaris str. 'Miyazaki F' 7174584 YP_002437054.1 CDS DvMF_2647 NC_011769.1 3349861 3350061 D PFAM: protein of unknown function DUF343; KEGG: dde:Dde_3093 hypothetical protein; hypothetical protein 3349861..3350061 Desulfovibrio vulgaris str. 'Miyazaki F' 7174585 YP_002437055.1 CDS DvMF_2648 NC_011769.1 3350334 3350747 D PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3092 HSP20 family protein; heat shock protein Hsp20 3350334..3350747 Desulfovibrio vulgaris str. 'Miyazaki F' 7174586 YP_002437056.1 CDS DvMF_2649 NC_011769.1 3350757 3351314 D PFAM: heat shock protein Hsp20; KEGG: dde:Dde_3091 HSP20 family protein; heat shock protein Hsp20 3350757..3351314 Desulfovibrio vulgaris str. 'Miyazaki F' 7174587 YP_002437057.1 CDS DvMF_2650 NC_011769.1 3351493 3352041 D TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: dde:Dde_3090 phosphodiesterase; phosphodiesterase 3351493..3352041 Desulfovibrio vulgaris str. 'Miyazaki F' 7174588 YP_002437058.1 CDS DvMF_2651 NC_011769.1 3352099 3353250 D PFAM: dihydrouridine synthase; KEGG: dde:Dde_3089 dihydrouridine synthase family protein; dihydrouridine synthase 3352099..3353250 Desulfovibrio vulgaris str. 'Miyazaki F' 7174589 YP_002437059.1 CDS DvMF_2652 NC_011769.1 3353408 3353779 D PFAM: regulatory protein MerR; KEGG: bja:bll4578 transcriptional regulatory protein; MerR family transcriptional regulator 3353408..3353779 Desulfovibrio vulgaris str. 'Miyazaki F' 7174590 YP_002437060.1 CDS DvMF_2653 NC_011769.1 3353841 3354257 D PFAM: carboxymuconolactone decarboxylase; KEGG: mag:amb3965 hypothetical protein; carboxymuconolactone decarboxylase 3353841..3354257 Desulfovibrio vulgaris str. 'Miyazaki F' 7174591 YP_002437061.1 CDS DvMF_2654 NC_011769.1 3354429 3354938 R KEGG: dac:Daci_5716 acetyltransferase; acetyltransferase complement(3354429..3354938) Desulfovibrio vulgaris str. 'Miyazaki F' 7174592 YP_002437062.1 CDS DvMF_2655 NC_011769.1 3355152 3355688 R hypothetical protein complement(3355152..3355688) Desulfovibrio vulgaris str. 'Miyazaki F' 7174593 YP_002437063.1 CDS DvMF_2656 NC_011769.1 3355963 3356385 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_3083 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(3355963..3356385) Desulfovibrio vulgaris str. 'Miyazaki F' 7174594 YP_002437064.1 CDS DvMF_2657 NC_011769.1 3356517 3357470 R KEGG: dde:Dde_3081 serine O-acetyltransferase; serine O-acetyltransferase complement(3356517..3357470) Desulfovibrio vulgaris str. 'Miyazaki F' 7174595 YP_002437065.1 CDS DvMF_2658 NC_011769.1 3357529 3358461 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: dde:Dde_3080 cysteine synthase; cysteine synthase complement(3357529..3358461) Desulfovibrio vulgaris str. 'Miyazaki F' 7174596 YP_002437066.1 CDS DvMF_2659 NC_011769.1 3358663 3359877 R TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class-III; KEGG: dde:Dde_3079 cysteine desulfurase; cysteine desulfurase NifS complement(3358663..3359877) Desulfovibrio vulgaris str. 'Miyazaki F' 7174597 YP_002437067.1 CDS DvMF_2660 NC_011769.1 3359874 3360719 R TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dde:Dde_3078 Fe-S cluster assembly protein NifU; Fe-S cluster assembly protein NifU complement(3359874..3360719) Desulfovibrio vulgaris str. 'Miyazaki F' 7174598 YP_002437068.1 CDS DvMF_2661 NC_011769.1 3360927 3361910 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_3077 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(3360927..3361910) Desulfovibrio vulgaris str. 'Miyazaki F' 7174599 YP_002437069.1 CDS DvMF_2662 NC_011769.1 3362242 3363258 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_3077 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(3362242..3363258) Desulfovibrio vulgaris str. 'Miyazaki F' 7174600 YP_002437070.1 CDS DvMF_2663 NC_011769.1 3363574 3365157 D TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; KEGG: dde:Dde_3074 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3363574..3365157 Desulfovibrio vulgaris str. 'Miyazaki F' 7174601 YP_002437071.1 CDS DvMF_2664 NC_011769.1 3365822 3367024 D SMART: PDZ/DHR/GLGF domain protein; KEGG: mag:amb4535 Zn-dependent protease with chaperone function; PDZ/DHR/GLGF domain-containing protein 3365822..3367024 Desulfovibrio vulgaris str. 'Miyazaki F' 7174602 YP_002437072.1 CDS DvMF_2665 NC_011769.1 3367154 3368788 R KEGG: dde:Dde_1218 hypothetical protein; hypothetical protein complement(3367154..3368788) Desulfovibrio vulgaris str. 'Miyazaki F' 7174603 YP_002437073.1 CDS DvMF_2666 NC_011769.1 3369374 3369790 D PFAM: protein of unknown function UPF0047; KEGG: bra:BRADO6457 hypothetical protein; hypothetical protein 3369374..3369790 Desulfovibrio vulgaris str. 'Miyazaki F' 7174604 YP_002437074.1 CDS DvMF_2667 NC_011769.1 3369866 3370837 R KEGG: dde:Dde_2939 hypothetical protein; hypothetical protein complement(3369866..3370837) Desulfovibrio vulgaris str. 'Miyazaki F' 7174605 YP_002437075.1 CDS DvMF_2668 NC_011769.1 3371117 3371827 R PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2940 hypothetical protein; type IV pilus assembly PilZ complement(3371117..3371827) Desulfovibrio vulgaris str. 'Miyazaki F' 7174606 YP_002437076.1 CDS rnhA NC_011769.1 3371918 3372388 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(3371918..3372388) Desulfovibrio vulgaris str. 'Miyazaki F' 7174607 YP_002437077.1 CDS DvMF_2670 NC_011769.1 3372508 3373029 R KEGG: dde:Dde_2942 hypothetical protein; hypothetical protein complement(3372508..3373029) Desulfovibrio vulgaris str. 'Miyazaki F' 7174608 YP_002437078.1 CDS DvMF_2671 NC_011769.1 3373042 3374847 R PFAM: aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase; KEGG: dde:Dde_2943 aldehyde:ferredoxin oxidoreductase, tungsten-containing; aldehyde ferredoxin oxidoreductase complement(3373042..3374847) Desulfovibrio vulgaris str. 'Miyazaki F' 7174609 YP_002437079.1 CDS DvMF_2672 NC_011769.1 3374837 3375379 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2944 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(3374837..3375379) Desulfovibrio vulgaris str. 'Miyazaki F' 7174610 YP_002437080.1 CDS DvMF_2673 NC_011769.1 3375453 3376847 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: dde:Dde_2945 phosphomannomutase; phosphomannomutase complement(3375453..3376847) Desulfovibrio vulgaris str. 'Miyazaki F' 7174611 YP_002437081.1 CDS DvMF_2674 NC_011769.1 3376931 3378097 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: dde:Dde_2946 HflK protein; HflK protein 3376931..3378097 Desulfovibrio vulgaris str. 'Miyazaki F' 7174612 YP_002437082.1 CDS DvMF_2675 NC_011769.1 3378099 3378953 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: dde:Dde_2947 HflC protein; HflC protein 3378099..3378953 Desulfovibrio vulgaris str. 'Miyazaki F' 7174613 YP_002437083.1 CDS DvMF_2676 NC_011769.1 3379339 3380034 D PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: dde:Dde_2949 DNA-binding protein; phage repressor 3379339..3380034 Desulfovibrio vulgaris str. 'Miyazaki F' 7174614 YP_002437084.1 CDS DvMF_2677 NC_011769.1 3380356 3382266 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: azo:azo3685 hybrid sensor and regulator protein; response regulator receiver sensor hybrid histidine kinase 3380356..3382266 Desulfovibrio vulgaris str. 'Miyazaki F' 7174615 YP_002437085.1 CDS DvMF_2678 NC_011769.1 3382609 3384705 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2951 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 3382609..3384705 Desulfovibrio vulgaris str. 'Miyazaki F' 7174616 YP_002437086.1 CDS DvMF_2679 NC_011769.1 3385000 3386460 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_2952 two component Fis family transcriptional regulator; Fis family transcriptional regulator 3385000..3386460 Desulfovibrio vulgaris str. 'Miyazaki F' 7174617 YP_002437087.1 CDS DvMF_2680 NC_011769.1 3387457 3388110 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: saz:Sama_0143 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3387457..3388110 Desulfovibrio vulgaris str. 'Miyazaki F' 7174618 YP_002437088.1 CDS DvMF_2681 NC_011769.1 3388459 3390144 R PFAM: ribonuclease BN; KEGG: dde:Dde_3064 ribonuclease BN; ribonuclease BN complement(3388459..3390144) Desulfovibrio vulgaris str. 'Miyazaki F' 7174619 YP_002437089.1 CDS DvMF_2682 NC_011769.1 3390230 3391501 D KEGG: dde:Dde_3065 membrane-bound lytic murein transglycosylase B-like; membrane-bound lytic murein transglycosylase B-like protein 3390230..3391501 Desulfovibrio vulgaris str. 'Miyazaki F' 7174620 YP_002437090.1 CDS DvMF_2683 NC_011769.1 3391849 3395925 D KEGG: rru:Rru_A2406 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 3391849..3395925 Desulfovibrio vulgaris str. 'Miyazaki F' 7174621 YP_002437091.1 CDS DvMF_2684 NC_011769.1 3395988 3397061 R PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3069 amino acid ABC transporter permease; binding-protein-dependent transporters inner membrane component complement(3395988..3397061) Desulfovibrio vulgaris str. 'Miyazaki F' 7174622 YP_002437092.1 CDS DvMF_2685 NC_011769.1 3397166 3398032 R PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_3070 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(3397166..3398032) Desulfovibrio vulgaris str. 'Miyazaki F' 7174623 YP_002437093.1 CDS DvMF_2686 NC_011769.1 3398121 3399071 R TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_3071 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein complement(3398121..3399071) Desulfovibrio vulgaris str. 'Miyazaki F' 7174624 YP_002437094.1 CDS DvMF_2687 NC_011769.1 3399310 3400563 R PFAM: polysulphide reductase NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit; polysulphide reductase NrfD complement(3399310..3400563) Desulfovibrio vulgaris str. 'Miyazaki F' 7174625 YP_002437095.1 CDS DvMF_2688 NC_011769.1 3400573 3401340 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2934 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit; 4Fe-4S ferredoxin complement(3400573..3401340) Desulfovibrio vulgaris str. 'Miyazaki F' 7174626 YP_002437096.1 CDS DvMF_2689 NC_011769.1 3401353 3403428 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dde:Dde_2933 molybdopterin oxidoreductase, molybdopterin-binding subunit; molybdopterin oxidoreductase complement(3401353..3403428) Desulfovibrio vulgaris str. 'Miyazaki F' 7174627 YP_002437097.1 CDS DvMF_2690 NC_011769.1 3403441 3404076 R KEGG: dde:Dde_2932 hypothetical protein; hypothetical protein complement(3403441..3404076) Desulfovibrio vulgaris str. 'Miyazaki F' 7174628 YP_002437098.1 CDS DvMF_2691 NC_011769.1 3404242 3405747 R KEGG: dde:Dde_2931 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(3404242..3405747) Desulfovibrio vulgaris str. 'Miyazaki F' 7174629 YP_002437099.1 CDS DvMF_2692 NC_011769.1 3405744 3406334 R KEGG: dde:Dde_2930 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3405744..3406334) Desulfovibrio vulgaris str. 'Miyazaki F' 7174630 YP_002437100.1 CDS DvMF_2693 NC_011769.1 3406530 3408245 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dde:Dde_2929 histidine kinase; histidine kinase 3406530..3408245 Desulfovibrio vulgaris str. 'Miyazaki F' 7174631 YP_002437101.1 CDS DvMF_2694 NC_011769.1 3409003 3410208 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: mca:MCA1146 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 3409003..3410208 Desulfovibrio vulgaris str. 'Miyazaki F' 7174633 YP_002437102.1 CDS DvMF_2695 NC_011769.1 3410205 3411170 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_2900 GDP-fucose synthetase NAD dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3410205..3411170 Desulfovibrio vulgaris str. 'Miyazaki F' 7174634 YP_002437103.1 CDS DvMF_2696 NC_011769.1 3411353 3412444 D PFAM: glycosyl transferase family 2; KEGG: rpb:RPB_3840 glycosyl transferase, family 2; family 2 glycosyl transferase 3411353..3412444 Desulfovibrio vulgaris str. 'Miyazaki F' 7174635 YP_002437104.1 CDS DvMF_2697 NC_011769.1 3412438 3413529 D PFAM: acyltransferase 3; KEGG: vpa:VPA0771 lipopolysaccharide modification acyltransferase; acyltransferase 3 3412438..3413529 Desulfovibrio vulgaris str. 'Miyazaki F' 7174636 YP_002437105.1 CDS DvMF_2698 NC_011769.1 3413532 3415271 D TIGRFAM: methyltransferase FkbM family; KEGG: dde:Dde_2875 hypothetical protein; FkbM family methyltransferase 3413532..3415271 Desulfovibrio vulgaris str. 'Miyazaki F' 7174637 YP_002437106.1 CDS DvMF_2699 NC_011769.1 3415268 3416110 D PFAM: glycosyl transferase family 11; KEGG: dde:Dde_2877 alpha-1,2-fucosyltransferase; glycosyl transferase family protein 3415268..3416110 Desulfovibrio vulgaris str. 'Miyazaki F' 7174638 YP_002437107.1 CDS DvMF_2700 NC_011769.1 3416110 3417864 D PFAM: glycosyl transferase family 2; KEGG: glo:Glov_2749 protein of unknown function DUF268; family 2 glycosyl transferase 3416110..3417864 Desulfovibrio vulgaris str. 'Miyazaki F' 7174639 YP_002437108.1 CDS DvMF_2701 NC_011769.1 3417871 3418695 D PFAM: ABC transporter; KEGG: dde:Dde_2896 ABC transporter permease; ABC transporter 3417871..3418695 Desulfovibrio vulgaris str. 'Miyazaki F' 7174640 YP_002437109.1 CDS DvMF_2702 NC_011769.1 3418698 3419981 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ote:Oter_3246 ABC transporter; ABC transporter 3418698..3419981 Desulfovibrio vulgaris str. 'Miyazaki F' 7174641 YP_002437110.1 CDS DvMF_2703 NC_011769.1 3419978 3422101 D KEGG: tde:TDE1418 hypothetical protein; hypothetical protein 3419978..3422101 Desulfovibrio vulgaris str. 'Miyazaki F' 7174642 YP_002437111.1 CDS DvMF_2704 NC_011769.1 3422107 3422943 D PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4087 glycosyl transferase, family 2; family 2 glycosyl transferase 3422107..3422943 Desulfovibrio vulgaris str. 'Miyazaki F' 7174643 YP_002437112.1 CDS DvMF_2705 NC_011769.1 3422957 3423961 D PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_2583 glycosyl transferase family 2; family 2 glycosyl transferase 3422957..3423961 Desulfovibrio vulgaris str. 'Miyazaki F' 7174644 YP_002437113.1 CDS DvMF_2706 NC_011769.1 3424085 3425206 R KEGG: met:M446_1074 glycosyl transferase group 1; group 1 glycosyl transferase complement(3424085..3425206) Desulfovibrio vulgaris str. 'Miyazaki F' 7174645 YP_002437114.1 CDS DvMF_2707 NC_011769.1 3425484 3427406 R KEGG: cpc:Cpar_0784 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: CI repressor; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein complement(3425484..3427406) Desulfovibrio vulgaris str. 'Miyazaki F' 7174646 YP_002437115.1 CDS DvMF_2708 NC_011769.1 3427558 3428799 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 3427558..3428799 Desulfovibrio vulgaris str. 'Miyazaki F' 7174647 YP_002437116.1 CDS DvMF_2709 NC_011769.1 3428898 3429662 R PFAM: nitroreductase; KEGG: gsu:GSU2426 hypothetical protein; nitroreductase complement(3428898..3429662) Desulfovibrio vulgaris str. 'Miyazaki F' 7174648 YP_002437117.1 CDS DvMF_2710 NC_011769.1 3430110 3431855 D PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3430110..3431855 Desulfovibrio vulgaris str. 'Miyazaki F' 7174649 YP_002437118.1 CDS DvMF_2711 NC_011769.1 3432071 3432541 D KEGG: dde:Dde_2858 cytochrome C family protein; cytochrome C family protein 3432071..3432541 Desulfovibrio vulgaris str. 'Miyazaki F' 7174650 YP_002437119.1 CDS DvMF_2712 NC_011769.1 3432551 3434572 D TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3432551..3434572 Desulfovibrio vulgaris str. 'Miyazaki F' 7174651 YP_002437120.1 CDS DvMF_2713 NC_011769.1 3434744 3436714 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU2681 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(3434744..3436714) Desulfovibrio vulgaris str. 'Miyazaki F' 7174652 YP_002437121.1 CDS DvMF_2714 NC_011769.1 3436730 3437710 R PFAM: protein of unknown function DUF362; KEGG: sat:SYN_02059 hypothetical cytosolic protein; hypothetical protein complement(3436730..3437710) Desulfovibrio vulgaris str. 'Miyazaki F' 7174653 YP_002437122.1 CDS DvMF_2715 NC_011769.1 3438194 3438523 R hypothetical protein complement(3438194..3438523) Desulfovibrio vulgaris str. 'Miyazaki F' 7174654 YP_002437123.1 CDS DvMF_2716 NC_011769.1 3439055 3439375 R hypothetical protein complement(3439055..3439375) Desulfovibrio vulgaris str. 'Miyazaki F' 7174655 YP_002437124.1 CDS DvMF_2717 NC_011769.1 3439993 3441798 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3439993..3441798 Desulfovibrio vulgaris str. 'Miyazaki F' 7174656 YP_002437125.1 CDS DvMF_2718 NC_011769.1 3442323 3442919 D KEGG: lip:LI0923 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 3442323..3442919 Desulfovibrio vulgaris str. 'Miyazaki F' 7174657 YP_002437126.1 CDS DvMF_2719 NC_011769.1 3443316 3444026 D KEGG: dde:Dde_2808 competence protein ComM; competence protein ComM 3443316..3444026 Desulfovibrio vulgaris str. 'Miyazaki F' 7174658 YP_002437127.1 CDS DvMF_2720 NC_011769.1 3444023 3444577 D KEGG: sat:SYN_00794 phosphatidylserine/phosphatidylglycerophosphate related protein; phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein 3444023..3444577 Desulfovibrio vulgaris str. 'Miyazaki F' 7174659 YP_002437128.1 CDS DvMF_2721 NC_011769.1 3444821 3445171 D hypothetical protein 3444821..3445171 Desulfovibrio vulgaris str. 'Miyazaki F' 7174660 YP_002437129.1 CDS DvMF_2722 NC_011769.1 3445161 3446624 D PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pdi:BDI_2144 hypothetical protein; radical SAM protein 3445161..3446624 Desulfovibrio vulgaris str. 'Miyazaki F' 7174661 YP_002437130.1 CDS DvMF_2723 NC_011769.1 3446611 3447765 D PFAM: radical SAM protein; KEGG: pzu:PHZ_c2419 hypothetical protein; radical SAM protein 3446611..3447765 Desulfovibrio vulgaris str. 'Miyazaki F' 7174662 YP_002437131.1 CDS DvMF_2724 NC_011769.1 3447755 3448021 D KEGG: ret:RHE_PA00005 hypothetical protein; hypothetical protein 3447755..3448021 Desulfovibrio vulgaris str. 'Miyazaki F' 7174663 YP_002437132.1 CDS DvMF_2725 NC_011769.1 3448377 3449063 D PFAM: Resolvase domain; KEGG: met:M446_1223 resolvase domain; resolvase 3448377..3449063 Desulfovibrio vulgaris str. 'Miyazaki F' 7174664 YP_002437133.1 CDS DvMF_2726 NC_011769.1 3449917 3450681 R SMART: ParB domain protein nuclease; KEGG: azc:AZC_1530 hypothetical protein; ParB domain-containing protein nuclease complement(3449917..3450681) Desulfovibrio vulgaris str. 'Miyazaki F' 7174665 YP_002437134.1 CDS DvMF_2727 NC_011769.1 3450826 3452598 R PFAM: Resolvase domain; Recombinase; KEGG: dde:Dde_2774 hypothetical protein; recombinase complement(3450826..3452598) Desulfovibrio vulgaris str. 'Miyazaki F' 7174666 YP_002437135.1 CDS DvMF_2728 NC_011769.1 3452644 3453618 D PFAM: magnesium chelatase ChlI subunit; KEGG: dde:Dde_2773 competence protein ComM; magnesium chelatase ChlI subunit 3452644..3453618 Desulfovibrio vulgaris str. 'Miyazaki F' 7174667 YP_002437136.1 CDS DvMF_2729 NC_011769.1 3453698 3454342 D KEGG: met:M446_5119 flagellar hook-length control protein; hypothetical protein 3453698..3454342 Desulfovibrio vulgaris str. 'Miyazaki F' 7174668 YP_002437137.1 CDS DvMF_2730 NC_011769.1 3454434 3454952 R KEGG: dde:Dde_3506 hypothetical protein; hypothetical protein complement(3454434..3454952) Desulfovibrio vulgaris str. 'Miyazaki F' 7174669 YP_002437138.1 CDS DvMF_2731 NC_011769.1 3455132 3458155 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; KEGG: dde:Dde_2370 multi-sensor hybrid histidine kinase; PAS/PAC sensor hybrid histidine kinase complement(3455132..3458155) Desulfovibrio vulgaris str. 'Miyazaki F' 7174670 YP_002437139.1 CDS DvMF_2732 NC_011769.1 3458152 3458640 R PFAM: TadE family protein; KEGG: dde:Dde_2369 hypothetical protein; TadE family protein complement(3458152..3458640) Desulfovibrio vulgaris str. 'Miyazaki F' 7174671 YP_002437140.1 CDS DvMF_2733 NC_011769.1 3458659 3459879 R PFAM: von Willebrand factor A; KEGG: dde:Dde_2368 von Willebrand factor, type A; von Willebrand factor A complement(3458659..3459879) Desulfovibrio vulgaris str. 'Miyazaki F' 7174672 YP_002437141.1 CDS DvMF_2734 NC_011769.1 3459944 3460381 R PFAM: TadE family protein; KEGG: dde:Dde_2367 hypothetical protein; TadE family protein complement(3459944..3460381) Desulfovibrio vulgaris str. 'Miyazaki F' 7174673 YP_002437142.1 CDS DvMF_2735 NC_011769.1 3460512 3461666 R PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_2366 hypothetical protein; hypothetical protein complement(3460512..3461666) Desulfovibrio vulgaris str. 'Miyazaki F' 7174674 YP_002437143.1 CDS DvMF_2736 NC_011769.1 3461723 3462703 R PFAM: type II secretion system protein; KEGG: dde:Dde_2365 hypothetical protein; type II secretion system protein complement(3461723..3462703) Desulfovibrio vulgaris str. 'Miyazaki F' 7174675 YP_002437144.1 CDS DvMF_2737 NC_011769.1 3462717 3463682 R PFAM: type II secretion system protein; KEGG: dde:Dde_2364 hypothetical protein; type II secretion system protein complement(3462717..3463682) Desulfovibrio vulgaris str. 'Miyazaki F' 7174676 YP_002437145.1 CDS DvMF_2738 NC_011769.1 3463715 3465589 R PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein; type II secretion system protein E complement(3463715..3465589) Desulfovibrio vulgaris str. 'Miyazaki F' 7174677 YP_002437146.1 CDS DvMF_2739 NC_011769.1 3465592 3467037 R KEGG: dde:Dde_2362 response regulator receiver domain-containing protein; response regulator receiver protein complement(3465592..3467037) Desulfovibrio vulgaris str. 'Miyazaki F' 7174678 YP_002437147.1 CDS DvMF_2740 NC_011769.1 3467050 3467376 R KEGG: dde:Dde_2361 hypothetical protein; hypothetical protein complement(3467050..3467376) Desulfovibrio vulgaris str. 'Miyazaki F' 7174679 YP_002437148.1 CDS DvMF_2741 NC_011769.1 3467373 3468854 R PFAM: type II and III secretion system protein; transport-associated; KEGG: dde:Dde_2360 type II/III secretion system protein; type II and III secretion system protein complement(3467373..3468854) Desulfovibrio vulgaris str. 'Miyazaki F' 7174680 YP_002437149.1 CDS DvMF_2742 NC_011769.1 3468851 3469675 R TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: dde:Dde_2359 pilus assembly protein CpaB; Flp pilus assembly protein CpaB complement(3468851..3469675) Desulfovibrio vulgaris str. 'Miyazaki F' 7174681 YP_002437150.1 CDS DvMF_2743 NC_011769.1 3469688 3470278 R PFAM: peptidase A24A prepilin type IV; KEGG: dde:Dde_2358 hypothetical protein; peptidase A24A prepilin type IV complement(3469688..3470278) Desulfovibrio vulgaris str. 'Miyazaki F' 7174682 YP_002437151.1 CDS DvMF_2744 NC_011769.1 3470469 3470645 R PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin; Flp/Fap pilin component complement(3470469..3470645) Desulfovibrio vulgaris str. 'Miyazaki F' 7174683 YP_002437152.1 CDS DvMF_2745 NC_011769.1 3470687 3470863 R PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin; Flp/Fap pilin component complement(3470687..3470863) Desulfovibrio vulgaris str. 'Miyazaki F' 7174684 YP_002437153.1 CDS DvMF_2746 NC_011769.1 3470917 3471093 R PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin; Flp/Fap pilin component complement(3470917..3471093) Desulfovibrio vulgaris str. 'Miyazaki F' 7174685 YP_002437154.1 CDS DvMF_2747 NC_011769.1 3471147 3471323 R PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin; Flp/Fap pilin component complement(3471147..3471323) Desulfovibrio vulgaris str. 'Miyazaki F' 7174686 YP_002437155.1 CDS DvMF_2748 NC_011769.1 3471817 3473445 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dde:Dde_2355 two component Fis family transcriptional regulator; Fis family transcriptional regulator complement(3471817..3473445) Desulfovibrio vulgaris str. 'Miyazaki F' 7174687 YP_002437156.1 CDS DvMF_2749 NC_011769.1 3474091 3474687 D KEGG: dde:Dde_2770 hypothetical protein; hypothetical protein 3474091..3474687 Desulfovibrio vulgaris str. 'Miyazaki F' 7174688 YP_002437157.1 CDS DvMF_2750 NC_011769.1 3475163 3476290 D PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_0258 amino acid ABC transporter periplasmic-binding protein; extracellular ligand-binding receptor 3475163..3476290 Desulfovibrio vulgaris str. 'Miyazaki F' 7174689 YP_002437158.1 CDS DvMF_2751 NC_011769.1 3476605 3477510 D PFAM: inner-membrane translocator; KEGG: dde:Dde_0259 branched-chain amino acid ABC transporter permease; inner-membrane translocator 3476605..3477510 Desulfovibrio vulgaris str. 'Miyazaki F' 7174690 YP_002437159.1 CDS DvMF_2752 NC_011769.1 3477507 3478499 D PFAM: inner-membrane translocator; KEGG: dde:Dde_0260 branched-chain amino acid ABC transporter permease; inner-membrane translocator 3477507..3478499 Desulfovibrio vulgaris str. 'Miyazaki F' 7174691 YP_002437160.1 CDS DvMF_2753 NC_011769.1 3478496 3479263 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0261 ATPase; ABC transporter 3478496..3479263 Desulfovibrio vulgaris str. 'Miyazaki F' 7174692 YP_002437161.1 CDS DvMF_2754 NC_011769.1 3479540 3480256 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0262 ATPase; ABC transporter 3479540..3480256 Desulfovibrio vulgaris str. 'Miyazaki F' 7174693 YP_002437162.1 CDS DvMF_2755 NC_011769.1 3480604 3481008 R PFAM: response regulator receiver; KEGG: dde:Dde_2769 multi-sensor hybrid histidine kinase; response regulator receiver protein complement(3480604..3481008) Desulfovibrio vulgaris str. 'Miyazaki F' 7174694 YP_002437163.1 CDS purT NC_011769.1 3481441 3482622 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3481441..3482622 Desulfovibrio vulgaris str. 'Miyazaki F' 7174695 YP_002437164.1 CDS tgt NC_011769.1 3482971 3484131 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 3482971..3484131 Desulfovibrio vulgaris str. 'Miyazaki F' 7174696 YP_002437165.1 CDS DvMF_2758 NC_011769.1 3484444 3486540 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: azo:azo0498 GGDEF/PAS/PAC-domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(3484444..3486540) Desulfovibrio vulgaris str. 'Miyazaki F' 7174697 YP_002437166.1 CDS DvMF_2759 NC_011769.1 3487246 3489516 D PFAM: protein of unknown function DUF255; KEGG: sru:SRU_1548 protein of unknown function, DUF255 family; hypothetical protein 3487246..3489516 Desulfovibrio vulgaris str. 'Miyazaki F' 7174698 YP_002437167.1 CDS DvMF_2760 NC_011769.1 3490625 3491650 R PFAM: conserved hypothetical protein; KEGG: atu:Atu2400 hypothetical protein; hypothetical protein complement(3490625..3491650) Desulfovibrio vulgaris str. 'Miyazaki F' 7174699 YP_002437168.1 CDS DvMF_2761 NC_011769.1 3491913 3492314 D KEGG: dde:Dde_2843 hypothetical protein; hypothetical protein 3491913..3492314 Desulfovibrio vulgaris str. 'Miyazaki F' 7174700 YP_002437169.1 CDS DvMF_2762 NC_011769.1 3492524 3494419 R TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; MASE1 domain protein; hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_4030 diguanylate cyclase; diguanylate cyclase with hemerythrin-like metal-binding domain complement(3492524..3494419) Desulfovibrio vulgaris str. 'Miyazaki F' 7174701 YP_002437170.1 CDS DvMF_2763 NC_011769.1 3494880 3495704 R KEGG: mag:amb3043 ABC-type tungstate transporter, permease; tungston ABC transporter permease complement(3494880..3495704) Desulfovibrio vulgaris str. 'Miyazaki F' 7174702 YP_002437171.1 CDS DvMF_2764 NC_011769.1 3495758 3497035 R KEGG: dde:Dde_2840 hypothetical protein; hypothetical protein complement(3495758..3497035) Desulfovibrio vulgaris str. 'Miyazaki F' 7174703 YP_002437172.1 CDS valS NC_011769.1 3497253 3499904 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3497253..3499904 Desulfovibrio vulgaris str. 'Miyazaki F' 7174704 YP_002437173.1 CDS DvMF_2766 NC_011769.1 3500288 3500746 D KEGG: cbf:CLI_1113 hypothetical protein; hypothetical protein 3500288..3500746 Desulfovibrio vulgaris str. 'Miyazaki F' 7174705 YP_002437174.1 CDS DvMF_2767 NC_011769.1 3500840 3502351 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen III synthase HEM4; KEGG: dde:Dde_2837 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase; uroporphyrin-III C-methyltransferase 3500840..3502351 Desulfovibrio vulgaris str. 'Miyazaki F' 7174706 YP_002437175.1 CDS DvMF_2768 NC_011769.1 3502621 3503055 D PFAM: MOSC domain containing protein; KEGG: dde:Dde_2836 MOSC domain-containing protein; MOSC domain-containing protein 3502621..3503055 Desulfovibrio vulgaris str. 'Miyazaki F' 7174707 YP_002437176.1 CDS DvMF_2769 NC_011769.1 3503125 3503808 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; KEGG: dde:Dde_2835 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 3503125..3503808 Desulfovibrio vulgaris str. 'Miyazaki F' 7174708 YP_002437177.1 CDS DvMF_2771 NC_011769.1 3504224 3504835 D PFAM: lysine exporter (LYSE/YGGA); KEGG: dde:Dde_2833 hypothetical protein; lysine exporter protein LysE/YggA 3504224..3504835 Desulfovibrio vulgaris str. 'Miyazaki F' 7174710 YP_002437178.1 CDS DvMF_2772 NC_011769.1 3505060 3507498 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dde:Dde_2832 multi-sensor signal transduction histidine kinase; signal transduction histidine kinase, nitrogen specific, NtrB complement(3505060..3507498) Desulfovibrio vulgaris str. 'Miyazaki F' 7174711 YP_002437179.1 CDS DvMF_2773 NC_011769.1 3507495 3508736 R PFAM: extracellular ligand-binding receptor; KEGG: dde:Dde_2831 substrate-binding protein; extracellular ligand-binding receptor complement(3507495..3508736) Desulfovibrio vulgaris str. 'Miyazaki F' 7174712 YP_002437180.1 CDS DvMF_2774 NC_011769.1 3509064 3509765 D PFAM: AMMECR1 domain protein; KEGG: dde:Dde_2830 AMMECR1; AMMECR1 domain-containing protein 3509064..3509765 Desulfovibrio vulgaris str. 'Miyazaki F' 7174713 YP_002437181.1 CDS DvMF_2775 NC_011769.1 3510180 3511346 D PFAM: major facilitator superfamily MFS_1; KEGG: dde:Dde_2829 hypothetical protein; major facilitator superfamily protein 3510180..3511346 Desulfovibrio vulgaris str. 'Miyazaki F' 7174714 YP_002437182.1 CDS DvMF_2776 NC_011769.1 3511405 3511956 D KEGG: dde:Dde_2828 hypothetical protein; hypothetical protein 3511405..3511956 Desulfovibrio vulgaris str. 'Miyazaki F' 7174715 YP_002437183.1 CDS DvMF_2777 NC_011769.1 3511964 3512887 D KEGG: dde:Dde_2827 hypothetical protein; hypothetical protein 3511964..3512887 Desulfovibrio vulgaris str. 'Miyazaki F' 7174716 YP_002437184.1 CDS DvMF_2778 NC_011769.1 3512891 3515362 D KEGG: dde:Dde_2826 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 3512891..3515362 Desulfovibrio vulgaris str. 'Miyazaki F' 7174717 YP_002437185.1 CDS DvMF_2779 NC_011769.1 3515359 3517572 D KEGG: dde:Dde_2825 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase AAA; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATPase AAA; Fis family transcriptional regulator 3515359..3517572 Desulfovibrio vulgaris str. 'Miyazaki F' 7174718 YP_002437186.1 CDS DvMF_2780 NC_011769.1 3518077 3518898 D KEGG: dde:Dde_0234 ABC transporter periplasmic substrate-binding protein; ABC transporter periplasmic protein 3518077..3518898 Desulfovibrio vulgaris str. 'Miyazaki F' 7174719 YP_002437187.1 CDS DvMF_2781 NC_011769.1 3519107 3519802 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_0233 ABC transporter permease; ABC transporter permease 3519107..3519802 Desulfovibrio vulgaris str. 'Miyazaki F' 7174720 YP_002437188.1 CDS DvMF_2782 NC_011769.1 3519799 3520653 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_0232 ATPase; ABC transporter 3519799..3520653 Desulfovibrio vulgaris str. 'Miyazaki F' 7174721 YP_002437189.1 CDS DvMF_2783 NC_011769.1 3521097 3523052 R TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_2823 acetyl-coenzyme A synthetase; acetate/CoA ligase complement(3521097..3523052) Desulfovibrio vulgaris str. 'Miyazaki F' 7174722 YP_002437190.1 CDS DvMF_2784 NC_011769.1 3523231 3524307 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: dde:Dde_2822 response regulator receiver domain-containing protein; LytTR family transcriptional regulator complement(3523231..3524307) Desulfovibrio vulgaris str. 'Miyazaki F' 7174723 YP_002437191.1 CDS DvMF_2785 NC_011769.1 3524844 3526868 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(3524844..3526868) Desulfovibrio vulgaris str. 'Miyazaki F' 7174724 YP_002437192.1 CDS DvMF_2786 NC_011769.1 3527193 3528983 R TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_2765 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein complement(3527193..3528983) Desulfovibrio vulgaris str. 'Miyazaki F' 7174725 YP_002437193.1 CDS DvMF_2787 NC_011769.1 3529175 3530002 R PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_2764 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(3529175..3530002) Desulfovibrio vulgaris str. 'Miyazaki F' 7174726 YP_002437194.1 CDS DvMF_2788 NC_011769.1 3530154 3530885 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2763 ATPase; ABC transporter complement(3530154..3530885) Desulfovibrio vulgaris str. 'Miyazaki F' 7174727 YP_002437195.1 CDS DvMF_2789 NC_011769.1 3531536 3532951 R PFAM: ATP-binding region ATPase domain protein; KEGG: dde:Dde_2762 histidine kinase; histidine kinase complement(3531536..3532951) Desulfovibrio vulgaris str. 'Miyazaki F' 7174728 YP_002437196.1 CDS DvMF_2790 NC_011769.1 3533449 3534366 D PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1667 hypothetical protein; hypothetical protein 3533449..3534366 Desulfovibrio vulgaris str. 'Miyazaki F' 7174729 YP_002437197.1 CDS DvMF_2791 NC_011769.1 3534623 3534955 D PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_2760 hypothetical protein; type IV pilus assembly PilZ 3534623..3534955 Desulfovibrio vulgaris str. 'Miyazaki F' 7174730 YP_002437198.1 CDS DvMF_2792 NC_011769.1 3535162 3536106 R PFAM: YceI family protein; SMART: Rhodanese domain protein; KEGG: dps:DP1288 hypothetical protein; hypothetical protein complement(3535162..3536106) Desulfovibrio vulgaris str. 'Miyazaki F' 7174731 YP_002437199.1 CDS DvMF_2793 NC_011769.1 3536260 3537198 R PFAM: pirin; KEGG: dps:DP1287 pirin; pirin complement(3536260..3537198) Desulfovibrio vulgaris str. 'Miyazaki F' 7174732 YP_002437200.1 CDS DvMF_2794 NC_011769.1 3537554 3537877 R KEGG: dde:Dde_2759 hypothetical protein; hypothetical protein complement(3537554..3537877) Desulfovibrio vulgaris str. 'Miyazaki F' 7174733 YP_002437201.1 CDS DvMF_2795 NC_011769.1 3537983 3539182 R PFAM: peptidase M29 aminopeptidase II; KEGG: dde:Dde_2758 M29 family peptidase; peptidase M29 aminopeptidase II complement(3537983..3539182) Desulfovibrio vulgaris str. 'Miyazaki F' 7174734 YP_002437202.1 CDS DvMF_2796 NC_011769.1 3539711 3541453 R PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_2755 hypothetical protein; hypothetical protein complement(3539711..3541453) Desulfovibrio vulgaris str. 'Miyazaki F' 7174735 YP_002437203.1 CDS DvMF_2797 NC_011769.1 3541454 3542044 R KEGG: lip:LI0115 hypothetical protein; hypothetical protein complement(3541454..3542044) Desulfovibrio vulgaris str. 'Miyazaki F' 7174736 YP_002437204.1 CDS DvMF_2798 NC_011769.1 3542109 3542579 R PFAM: transcription activator effector binding; KEGG: dde:Dde_2753 hypothetical protein; transcription activator effector binding complement(3542109..3542579) Desulfovibrio vulgaris str. 'Miyazaki F' 7174737 YP_002437205.1 CDS DvMF_2799 NC_011769.1 3542895 3543170 D PFAM: histone family protein DNA-binding protein; KEGG: dde:Dde_2752 histone-like DNA-binding protein; histone family protein DNA-binding protein 3542895..3543170 Desulfovibrio vulgaris str. 'Miyazaki F' 7174738 YP_002437206.1 CDS DvMF_2800 NC_011769.1 3543326 3543733 R KEGG: lpc:LPC_0907 mitomycin resistance protein McrB; hypothetical protein complement(3543326..3543733) Desulfovibrio vulgaris str. 'Miyazaki F' 7174739 YP_002437207.1 CDS DvMF_2801 NC_011769.1 3543730 3545088 R PFAM: MOFRL domain protein; KEGG: dde:Dde_2751 glycerate 2-kinase; hydroxypyruvate reductase complement(3543730..3545088) Desulfovibrio vulgaris str. 'Miyazaki F' 7174740 YP_002437208.1 CDS DvMF_2802 NC_011769.1 3545474 3546028 D PFAM: transport-associated; KEGG: dde:Dde_2000 transporter; transport-associated 3545474..3546028 Desulfovibrio vulgaris str. 'Miyazaki F' 7174741 YP_002437209.1 CDS DvMF_2803 NC_011769.1 3546164 3546322 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_2749 rubredoxin; rubredoxin-type Fe(Cys)4 protein 3546164..3546322 Desulfovibrio vulgaris str. 'Miyazaki F' 7174742 YP_002437210.1 CDS DvMF_2804 NC_011769.1 3546444 3547856 R TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: azc:AZC_3677 chromate transporter; chromate transporter chromate ion transporter (CHR) family complement(3546444..3547856) Desulfovibrio vulgaris str. 'Miyazaki F' 7174743 YP_002437211.1 CDS DvMF_2805 NC_011769.1 3547989 3549080 R KEGG: bid:Bind_2524 ChrB protein; ChrB protein complement(3547989..3549080) Desulfovibrio vulgaris str. 'Miyazaki F' 7174744 YP_002437212.1 CDS DvMF_2806 NC_011769.1 3549259 3549816 D KEGG: mta:Moth_1023 hypothetical protein; hypothetical protein 3549259..3549816 Desulfovibrio vulgaris str. 'Miyazaki F' 7174745 YP_002437213.1 CDS DvMF_2807 NC_011769.1 3549856 3551100 D PFAM: major facilitator superfamily MFS_1; KEGG: sfu:Sfum_0094 major facilitator superfamily MFS_1; major facilitator superfamily protein 3549856..3551100 Desulfovibrio vulgaris str. 'Miyazaki F' 7174746 YP_002437214.1 CDS DvMF_2808 NC_011769.1 3551105 3551647 D KEGG: mka:MK0494 HD superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 3551105..3551647 Desulfovibrio vulgaris str. 'Miyazaki F' 7174747 YP_002437215.1 CDS DvMF_2809 NC_011769.1 3551835 3552938 R PFAM: aminotransferase class V; KEGG: dde:Dde_2744 aminotransferase, class V; class V aminotransferase complement(3551835..3552938) Desulfovibrio vulgaris str. 'Miyazaki F' 7174748 YP_002437216.1 CDS DvMF_2810 NC_011769.1 3553315 3554241 R KEGG: dde:Dde_2743 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(3553315..3554241) Desulfovibrio vulgaris str. 'Miyazaki F' 7174749 YP_002437217.1 CDS DvMF_2811 NC_011769.1 3554232 3555125 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(3554232..3555125) Desulfovibrio vulgaris str. 'Miyazaki F' 7174750 YP_002437218.1 CDS DvMF_2812 NC_011769.1 3555390 3556343 R PFAM: protein of unknown function DUF81; KEGG: dol:Dole_2891 hypothetical protein; hypothetical protein complement(3555390..3556343) Desulfovibrio vulgaris str. 'Miyazaki F' 7174751 YP_002437219.1 CDS DvMF_2813 NC_011769.1 3556769 3557857 D PFAM: integrase family protein; TOBE domain protein; KEGG: dde:Dde_3517 molybdenum-pterin binding domain-containing protein; TOBE domain-containing protein 3556769..3557857 Desulfovibrio vulgaris str. 'Miyazaki F' 7174752 YP_002437220.1 CDS hisD NC_011769.1 3558242 3559546 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3558242..3559546 Desulfovibrio vulgaris str. 'Miyazaki F' 7174753 YP_002437221.1 CDS DvMF_2815 NC_011769.1 3559731 3560627 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 3559731..3560627 Desulfovibrio vulgaris str. 'Miyazaki F' 7174754 YP_002437222.1 CDS DvMF_2816 NC_011769.1 3560767 3561531 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dde:Dde_1006 enoyl-[acyl-carrier-protein] reductase [NADH]; short-chain dehydrogenase/reductase SDR 3560767..3561531 Desulfovibrio vulgaris str. 'Miyazaki F' 7174755 YP_002437223.1 CDS DvMF_2817 NC_011769.1 3563002 3563328 R KEGG: dde:Dde_1000 hypothetical protein; hypothetical protein complement(3563002..3563328) Desulfovibrio vulgaris str. 'Miyazaki F' 7174758 YP_002437224.1 CDS DvMF_2818 NC_011769.1 3563337 3563981 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: dde:Dde_0998 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(3563337..3563981) Desulfovibrio vulgaris str. 'Miyazaki F' 7174759 YP_002437225.1 CDS DvMF_2819 NC_011769.1 3564308 3565426 R KEGG: dde:Dde_0997 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein complement(3564308..3565426) Desulfovibrio vulgaris str. 'Miyazaki F' 7174760 YP_002437226.1 CDS DvMF_2820 NC_011769.1 3565508 3566548 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3565508..3566548 Desulfovibrio vulgaris str. 'Miyazaki F' 7174761 YP_002437227.1 CDS DvMF_2821 NC_011769.1 3566634 3567593 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3566634..3567593 Desulfovibrio vulgaris str. 'Miyazaki F' 7174762 YP_002437228.1 CDS DvMF_2822 NC_011769.1 3567759 3568229 D KEGG: dde:Dde_0994 hypothetical protein; hypothetical protein 3567759..3568229 Desulfovibrio vulgaris str. 'Miyazaki F' 7174763 YP_002437229.1 CDS DvMF_2823 NC_011769.1 3568213 3570480 D KEGG: dde:Dde_0993 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 3568213..3570480 Desulfovibrio vulgaris str. 'Miyazaki F' 7174764 YP_002437230.1 CDS DvMF_2824 NC_011769.1 3570477 3571592 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dde:Dde_0992 rod shape-determining protein RodA; rod shape-determining protein RodA 3570477..3571592 Desulfovibrio vulgaris str. 'Miyazaki F' 7174765 YP_002437231.1 CDS DvMF_2825 NC_011769.1 3571652 3571993 D PFAM: protein of unknown function DUF583; KEGG: dde:Dde_0991 hypothetical protein; hypothetical protein 3571652..3571993 Desulfovibrio vulgaris str. 'Miyazaki F' 7174766 YP_002437232.1 CDS DvMF_2826 NC_011769.1 3572180 3572596 D PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0990 ATP synthase F0 B' subunit; H+transporting two-sector ATPase subunit B/B' 3572180..3572596 Desulfovibrio vulgaris str. 'Miyazaki F' 7174767 YP_002437233.1 CDS DvMF_2827 NC_011769.1 3572636 3573205 D PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0989 ATP synthase F0 subunit beta; H+transporting two-sector ATPase subunit B/B' 3572636..3573205 Desulfovibrio vulgaris str. 'Miyazaki F' 7174768 YP_002437234.1 CDS DvMF_2828 NC_011769.1 3573202 3573753 D produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 3573202..3573753 Desulfovibrio vulgaris str. 'Miyazaki F' 7174769 YP_002437235.1 CDS DvMF_2829 NC_011769.1 3573758 3575266 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 3573758..3575266 Desulfovibrio vulgaris str. 'Miyazaki F' 7174770 YP_002437236.1 CDS DvMF_2830 NC_011769.1 3575281 3576162 D produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 3575281..3576162 Desulfovibrio vulgaris str. 'Miyazaki F' 7174771 YP_002437237.1 CDS DvMF_2831 NC_011769.1 3576180 3577595 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 3576180..3577595 Desulfovibrio vulgaris str. 'Miyazaki F' 7174772 YP_002437238.1 CDS atpC NC_011769.1 3577606 3578010 D produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit epsilon is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit epsilon 3577606..3578010 Desulfovibrio vulgaris str. 'Miyazaki F' 7174773 YP_002437239.1 CDS DvMF_2833 NC_011769.1 3578544 3578780 R KEGG: dde:Dde_1145 hypothetical protein; hypothetical protein complement(3578544..3578780) Desulfovibrio vulgaris str. 'Miyazaki F' 7174774 YP_002437240.1 CDS DvMF_2834 NC_011769.1 3579336 3579683 D KEGG: dde:Dde_1143 hypothetical protein; hypothetical protein 3579336..3579683 Desulfovibrio vulgaris str. 'Miyazaki F' 7174775 YP_002437241.1 CDS dnaK NC_011769.1 3580091 3582010 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 3580091..3582010 Desulfovibrio vulgaris str. 'Miyazaki F' 7174776 YP_002437242.1 CDS DvMF_2836 NC_011769.1 3582052 3584379 D KEGG: dde:Dde_1022 hypothetical protein; hypothetical protein 3582052..3584379 Desulfovibrio vulgaris str. 'Miyazaki F' 7174777 YP_002437243.1 CDS DvMF_2837 NC_011769.1 3584404 3584691 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: dde:Dde_1021 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; glutamyl-tRNA(Gln) amidotransferase subunit C 3584404..3584691 Desulfovibrio vulgaris str. 'Miyazaki F' 7174778 YP_002437244.1 CDS gatA NC_011769.1 3585069 3586574 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 3585069..3586574 Desulfovibrio vulgaris str. 'Miyazaki F' 7174779 YP_002437245.1 CDS DvMF_2839 NC_011769.1 3586620 3587675 D PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: dde:Dde_1019 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 3586620..3587675 Desulfovibrio vulgaris str. 'Miyazaki F' 7174780 YP_002437246.1 CDS DvMF_2840 NC_011769.1 3587862 3589073 R PFAM: EAL domain protein; metal-dependent hydrolase HDOD; KEGG: dde:Dde_2343 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(3587862..3589073) Desulfovibrio vulgaris str. 'Miyazaki F' 7174781 YP_002437247.1 CDS DvMF_2841 NC_011769.1 3589572 3590009 R PFAM: response regulator receiver; KEGG: dde:Dde_1018 response regulator receiver domain-containing protein; response regulator receiver protein complement(3589572..3590009) Desulfovibrio vulgaris str. 'Miyazaki F' 7174782 YP_002437248.1 CDS DvMF_2842 NC_011769.1 3590229 3590525 R KEGG: dde:Dde_1017 hypothetical protein; hypothetical protein complement(3590229..3590525) Desulfovibrio vulgaris str. 'Miyazaki F' 7174783 YP_002437249.1 CDS DvMF_2843 NC_011769.1 3590705 3592348 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_1016 two component Fis family transcriptional regulator; Fis family transcriptional regulator complement(3590705..3592348) Desulfovibrio vulgaris str. 'Miyazaki F' 7174784 YP_002437250.1 CDS DvMF_2844 NC_011769.1 3592368 3594029 R PFAM: ATP-binding region ATPase domain protein; KEGG: sfu:Sfum_3740 PAS/PAC sensor protein; histidine kinase complement(3592368..3594029) Desulfovibrio vulgaris str. 'Miyazaki F' 7174785 YP_002437251.1 CDS uvrC NC_011769.1 3594321 3596609 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(3594321..3596609) Desulfovibrio vulgaris str. 'Miyazaki F' 7174786 YP_002437252.1 CDS DvMF_2846 NC_011769.1 3596931 3598325 D KEGG: dde:Dde_1010 hypothetical protein; hypothetical protein 3596931..3598325 Desulfovibrio vulgaris str. 'Miyazaki F' 7174787 YP_002437253.1 CDS DvMF_2848 NC_011769.1 3600350 3601021 R PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; KEGG: dde:Dde_0765 CBS; hypothetical protein complement(3600350..3601021) Desulfovibrio vulgaris str. 'Miyazaki F' 7174789 YP_002437254.1 CDS DvMF_2849 NC_011769.1 3601299 3602165 D PFAM: protein of unknown function DUF161; KEGG: dde:Dde_2520 hypothetical protein; hypothetical protein 3601299..3602165 Desulfovibrio vulgaris str. 'Miyazaki F' 7174790 YP_002437255.1 CDS DvMF_2850 NC_011769.1 3602422 3603507 R KEGG: dde:Dde_0769 hypothetical protein; hypothetical protein complement(3602422..3603507) Desulfovibrio vulgaris str. 'Miyazaki F' 7174791 YP_002437256.1 CDS DvMF_2851 NC_011769.1 3603938 3606361 R KEGG: dde:Dde_0788 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; diguanylate cyclase and serine/threonine protein kinase with TPR repeats complement(3603938..3606361) Desulfovibrio vulgaris str. 'Miyazaki F' 7174792 YP_002437257.1 CDS DvMF_2852 NC_011769.1 3606783 3607319 D PFAM: nitroreductase; KEGG: dde:Dde_0787 nitroreductase family protein; nitroreductase 3606783..3607319 Desulfovibrio vulgaris str. 'Miyazaki F' 7174793 YP_002437258.1 CDS DvMF_2853 NC_011769.1 3607316 3607948 D PFAM: beta-lactamase; KEGG: dde:Dde_0786 metallo-beta-lactamase family protein; beta-lactamase 3607316..3607948 Desulfovibrio vulgaris str. 'Miyazaki F' 7174794 YP_002437259.1 CDS DvMF_2854 NC_011769.1 3608038 3608229 D hypothetical protein 3608038..3608229 Desulfovibrio vulgaris str. 'Miyazaki F' 7174795 YP_002437260.1 CDS DvMF_2855 NC_011769.1 3608219 3608392 D hypothetical protein 3608219..3608392 Desulfovibrio vulgaris str. 'Miyazaki F' 7174796 YP_002437261.1 CDS DvMF_2856 NC_011769.1 3608395 3609027 D PFAM: NADPH-dependent FMN reductase; KEGG: dde:Dde_0785 iron-sulfur flavoprotein; NADPH-dependent FMN reductase 3608395..3609027 Desulfovibrio vulgaris str. 'Miyazaki F' 7174797 YP_002437262.1 CDS DvMF_2857 NC_011769.1 3609031 3609855 D PFAM: phosphoribosyltransferase; KEGG: lip:LI1111 predicted amidophosphoribosyltransferases; phosphoribosyltransferase 3609031..3609855 Desulfovibrio vulgaris str. 'Miyazaki F' 7174798 YP_002437263.1 CDS DvMF_2858 NC_011769.1 3609961 3610698 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpt:Bpet3662 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3609961..3610698 Desulfovibrio vulgaris str. 'Miyazaki F' 7174799 YP_002437264.1 CDS DvMF_2859 NC_011769.1 3610877 3611665 D KEGG: dde:Dde_1189 hypothetical protein; hypothetical protein 3610877..3611665 Desulfovibrio vulgaris str. 'Miyazaki F' 7174800 YP_002437265.1 CDS DvMF_2860 NC_011769.1 3611931 3612329 D PFAM: response regulator receiver; KEGG: dde:Dde_0774 response regulator receiver domain-containing protein; response regulator receiver protein 3611931..3612329 Desulfovibrio vulgaris str. 'Miyazaki F' 7174801 YP_002437266.1 CDS DvMF_2861 NC_011769.1 3612557 3613483 D PFAM: import inner membrane translocase subunit Tim44; KEGG: dde:Dde_0773 hypothetical protein; import inner membrane translocase subunit Tim44 3612557..3613483 Desulfovibrio vulgaris str. 'Miyazaki F' 7174802 YP_002437267.1 CDS DvMF_2862 NC_011769.1 3613666 3614157 R PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: dde:Dde_1027 bacterioferritin comigratory protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(3613666..3614157) Desulfovibrio vulgaris str. 'Miyazaki F' 7174803 YP_002437268.1 CDS DvMF_2863 NC_011769.1 3614393 3616528 R PFAM: AsmA family protein; KEGG: dde:Dde_1028 hypothetical protein; AsmA family protein complement(3614393..3616528) Desulfovibrio vulgaris str. 'Miyazaki F' 7174804 YP_002437269.1 CDS DvMF_2864 NC_011769.1 3616839 3618494 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 3616839..3618494 Desulfovibrio vulgaris str. 'Miyazaki F' 7174805 YP_002437270.1 CDS DvMF_2865 NC_011769.1 3618559 3619758 D KEGG: ago:AGOS_ADR019C ADR019Cp; hypothetical protein 3618559..3619758 Desulfovibrio vulgaris str. 'Miyazaki F' 7174806 YP_002437271.1 CDS DvMF_2866 NC_011769.1 3620062 3620499 R hypothetical protein complement(3620062..3620499) Desulfovibrio vulgaris str. 'Miyazaki F' 7174807 YP_002437272.1 CDS DvMF_2867 NC_011769.1 3620910 3621488 D KEGG: tcx:Tcr_0674 protein of unknown function DUF847; hypothetical protein 3620910..3621488 Desulfovibrio vulgaris str. 'Miyazaki F' 7174808 YP_002437273.1 CDS DvMF_2868 NC_011769.1 3621698 3621940 D PFAM: transglycosylase; KEGG: gme:Gmet_1208 transglycosylase; transglycosylase 3621698..3621940 Desulfovibrio vulgaris str. 'Miyazaki F' 7174809 YP_002437274.1 CDS DvMF_2869 NC_011769.1 3622041 3622559 R hypothetical protein complement(3622041..3622559) Desulfovibrio vulgaris str. 'Miyazaki F' 7174810 YP_002437275.1 CDS DvMF_2870 NC_011769.1 3622885 3623631 R PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein; OmpA/MotB domain-containing protein complement(3622885..3623631) Desulfovibrio vulgaris str. 'Miyazaki F' 7174811 YP_002437276.1 CDS DvMF_2871 NC_011769.1 3623621 3624376 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1538 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel complement(3623621..3624376) Desulfovibrio vulgaris str. 'Miyazaki F' 7174812 YP_002437277.1 CDS argJ NC_011769.1 3625240 3626478 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(3625240..3626478) Desulfovibrio vulgaris str. 'Miyazaki F' 7174814 YP_002437278.1 CDS DvMF_2873 NC_011769.1 3626815 3629349 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(3626815..3629349) Desulfovibrio vulgaris str. 'Miyazaki F' 7174815 YP_002437279.1 CDS DvMF_2874 NC_011769.1 3629878 3631284 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dde:Dde_1085 glycolate oxidase iron-sulfur subunit; 4Fe-4S ferredoxin complement(3629878..3631284) Desulfovibrio vulgaris str. 'Miyazaki F' 7174816 YP_002437280.1 CDS DvMF_2875 NC_011769.1 3631620 3633044 R PFAM: FAD linked oxidase; KEGG: dde:Dde_1087 glycolate oxidase subunit GlcD; FAD linked oxidase complement(3631620..3633044) Desulfovibrio vulgaris str. 'Miyazaki F' 7174817 YP_002437281.1 CDS smpB NC_011769.1 3633205 3633666 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(3633205..3633666) Desulfovibrio vulgaris str. 'Miyazaki F' 7174818 YP_002437282.1 CDS DvMF_2877 NC_011769.1 3634888 3636663 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: dde:Dde_1089 phosphoenolpyruvate--protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(3634888..3636663) Desulfovibrio vulgaris str. 'Miyazaki F' 7174819 YP_002437283.1 CDS DvMF_2878 NC_011769.1 3636667 3636963 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: dde:Dde_1090 HPrNtr; phosphotransferase system, phosphocarrier protein HPr complement(3636667..3636963) Desulfovibrio vulgaris str. 'Miyazaki F' 7174820 YP_002437284.1 CDS DvMF_2879 NC_011769.1 3637018 3637797 R PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: dde:Dde_1091 PTS system, IID component; PTS system mannose/fructose/sorbose family transporter subunit IID complement(3637018..3637797) Desulfovibrio vulgaris str. 'Miyazaki F' 7174821 YP_002437285.1 CDS DvMF_2880 NC_011769.1 3637895 3638734 R PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dde:Dde_1092 hypothetical protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase complement(3637895..3638734) Desulfovibrio vulgaris str. 'Miyazaki F' 7174822 YP_002437286.1 CDS DvMF_2881 NC_011769.1 3638676 3639116 R PFAM: protein of unknown function UPF0102; KEGG: lip:LI0223 predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein complement(3638676..3639116) Desulfovibrio vulgaris str. 'Miyazaki F' 7174823 YP_002437287.1 CDS DvMF_2882 NC_011769.1 3639113 3639991 R PFAM: ribonuclease HII/HIII; KEGG: dde:Dde_1094 RNase HII; ribonuclease H complement(3639113..3639991) Desulfovibrio vulgaris str. 'Miyazaki F' 7174824 YP_002437288.1 CDS rplS NC_011769.1 3640268 3640615 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(3640268..3640615) Desulfovibrio vulgaris str. 'Miyazaki F' 7174825 YP_002437289.1 CDS DvMF_2884 NC_011769.1 3640671 3641966 R KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase complement(3640671..3641966) Desulfovibrio vulgaris str. 'Miyazaki F' 7174826 YP_002437290.1 CDS DvMF_2885 NC_011769.1 3641983 3642615 R TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: dde:Dde_1097 16S rRNA processing protein RimM; 16S rRNA processing protein RimM complement(3641983..3642615) Desulfovibrio vulgaris str. 'Miyazaki F' 7174827 YP_002437291.1 CDS DvMF_2886 NC_011769.1 3642812 3643045 R KEGG: dde:Dde_1098 hypothetical protein; hypothetical protein complement(3642812..3643045) Desulfovibrio vulgaris str. 'Miyazaki F' 7174828 YP_002437292.1 CDS rpsP NC_011769.1 3643129 3643368 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(3643129..3643368) Desulfovibrio vulgaris str. 'Miyazaki F' 7174829 YP_002437293.1 CDS DvMF_2888 NC_011769.1 3643457 3645013 R KEGG: dde:Dde_1100 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: ATPase AAA; signal recognition particle protein complement(3643457..3645013) Desulfovibrio vulgaris str. 'Miyazaki F' 7174830 YP_002437294.1 CDS DvMF_2889 NC_011769.1 3645370 3646554 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(3645370..3646554) Desulfovibrio vulgaris str. 'Miyazaki F' 7174831 YP_002437295.1 CDS DvMF_2890 NC_011769.1 3646672 3646905 R KEGG: dde:Dde_1105 hypothetical protein; hypothetical protein complement(3646672..3646905) Desulfovibrio vulgaris str. 'Miyazaki F' 7174832 YP_002437296.1 CDS DvMF_2891 NC_011769.1 3646895 3648772 R KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like; 5-enolpyruvylshikimate-3-phosphate synthase-like protein complement(3646895..3648772) Desulfovibrio vulgaris str. 'Miyazaki F' 7174833 YP_002437297.1 CDS DvMF_2892 NC_011769.1 3649654 3650157 D TIGRFAM: adenylylsulfate reductase subunit beta; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_1109 adenylylsulfate reductase subunit beta; adenylylsulfate reductase subunit beta 3649654..3650157 Desulfovibrio vulgaris str. 'Miyazaki F' 7174834 YP_002437298.1 CDS DvMF_2893 NC_011769.1 3650200 3652197 D catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 3650200..3652197 Desulfovibrio vulgaris str. 'Miyazaki F' 7174835 YP_002437299.1 CDS DvMF_2894 NC_011769.1 3652346 3653584 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_1111 heterodisulfide reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3652346..3653584 Desulfovibrio vulgaris str. 'Miyazaki F' 7174836 YP_002437300.1 CDS DvMF_2895 NC_011769.1 3653591 3655855 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase subunit delta; KEGG: dde:Dde_1112 heterodisulfide reductase, iron-sulfur-binding subunit; methyl-viologen-reducing hydrogenase subunit delta 3653591..3655855 Desulfovibrio vulgaris str. 'Miyazaki F' 7174837 YP_002437301.1 CDS DvMF_2896 NC_011769.1 3655869 3657023 D KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit; heterodisulfide reductase 3655869..3657023 Desulfovibrio vulgaris str. 'Miyazaki F' 7174838 YP_002437302.1 CDS DvMF_2897 NC_011769.1 3657108 3657854 D KEGG: dde:Dde_1114 hypothetical protein; hypothetical protein 3657108..3657854 Desulfovibrio vulgaris str. 'Miyazaki F' 7174839 YP_002437303.1 CDS DvMF_2898 NC_011769.1 3658581 3660065 R PFAM: protein of unknown function UPF0027; KEGG: fal:FRAAL4283 hypothetical protein; hypothetical protein complement(3658581..3660065) Desulfovibrio vulgaris str. 'Miyazaki F' 7174840 YP_002437304.1 CDS DvMF_2899 NC_011769.1 3660108 3660560 R KEGG: bid:Bind_2909 hypothetical protein; hypothetical protein complement(3660108..3660560) Desulfovibrio vulgaris str. 'Miyazaki F' 7174841 YP_002437305.1 CDS DvMF_2900 NC_011769.1 3660726 3661223 R KEGG: dde:Dde_2578 AsnC family transcriptional regulator; AsnC family transcriptional regulator complement(3660726..3661223) Desulfovibrio vulgaris str. 'Miyazaki F' 7174842 YP_002437306.1 CDS DvMF_2901 NC_011769.1 3661234 3662313 R PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_2577 elongator protein 3/MiaB/NifB; radical SAM protein complement(3661234..3662313) Desulfovibrio vulgaris str. 'Miyazaki F' 7174843 YP_002437307.1 CDS DvMF_2902 NC_011769.1 3662489 3663490 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(3662489..3663490) Desulfovibrio vulgaris str. 'Miyazaki F' 7174844 YP_002437308.1 CDS DvMF_2903 NC_011769.1 3663759 3664940 R PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_2575 elongator protein 3/MiaB/NifB; radical SAM protein complement(3663759..3664940) Desulfovibrio vulgaris str. 'Miyazaki F' 7174845 YP_002437309.1 CDS DvMF_2904 NC_011769.1 3665137 3670950 R PFAM: protein of unknown function DUF490; KEGG: lip:LI0689 hypothetical protein; hypothetical protein complement(3665137..3670950) Desulfovibrio vulgaris str. 'Miyazaki F' 7174846 YP_002437310.1 CDS DvMF_2905 NC_011769.1 3670950 3673319 R PFAM: surface antigen (D15); KEGG: lip:LI0688 outer membrane protein; surface antigen (D15) complement(3670950..3673319) Desulfovibrio vulgaris str. 'Miyazaki F' 7174847 YP_002437311.1 CDS DvMF_2906 NC_011769.1 3673437 3674207 R KEGG: lip:LI0341 hypothetical protein; hypothetical protein complement(3673437..3674207) Desulfovibrio vulgaris str. 'Miyazaki F' 7174848 YP_002437312.1 CDS DvMF_2907 NC_011769.1 3674555 3674890 R KEGG: dde:Dde_1115 hypothetical protein; hypothetical protein complement(3674555..3674890) Desulfovibrio vulgaris str. 'Miyazaki F' 7174849 YP_002437313.1 CDS DvMF_2908 NC_011769.1 3675060 3676760 R TIGRFAM: MJ0042 family finger-like protein; PFAM: zinc finger/thioredoxin KEGG: dde:Dde_1116 hypothetical protein; hypothetical protein complement(3675060..3676760) Desulfovibrio vulgaris str. 'Miyazaki F' 7174850 YP_002437314.1 CDS DvMF_2909 NC_011769.1 3676925 3678436 R KEGG: dde:Dde_1117 hypothetical protein; hypothetical protein complement(3676925..3678436) Desulfovibrio vulgaris str. 'Miyazaki F' 7174851 YP_002437315.1 CDS DvMF_2910 NC_011769.1 3678433 3679689 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1118 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(3678433..3679689) Desulfovibrio vulgaris str. 'Miyazaki F' 7174852 YP_002437316.1 CDS DvMF_2911 NC_011769.1 3679750 3680577 R PFAM: flagellar protein FliS; KEGG: dde:Dde_1119 flagellar protein FliS; flagellar protein FliS complement(3679750..3680577) Desulfovibrio vulgaris str. 'Miyazaki F' 7174853 YP_002437317.1 CDS DvMF_2912 NC_011769.1 3680696 3682429 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: dde:Dde_1120 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein complement(3680696..3682429) Desulfovibrio vulgaris str. 'Miyazaki F' 7174854 YP_002437318.1 CDS DvMF_2913 NC_011769.1 3682730 3683878 R PFAM: peptidase M22 glycoprotease; KEGG: dde:Dde_1121 glycoprotease family protein; peptidase M22 glycoprotease complement(3682730..3683878) Desulfovibrio vulgaris str. 'Miyazaki F' 7174855 YP_002437319.1 CDS DvMF_2914 NC_011769.1 3683875 3684939 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: dde:Dde_1122 peptidase RseP; membrane-associated zinc metalloprotease complement(3683875..3684939) Desulfovibrio vulgaris str. 'Miyazaki F' 7174856 YP_002437320.1 CDS DvMF_2915 NC_011769.1 3684936 3686309 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3684936..3686309) Desulfovibrio vulgaris str. 'Miyazaki F' 7174857 YP_002437321.1 CDS DvMF_2916 NC_011769.1 3686346 3687878 R PFAM: pyridoxal-dependent decarboxylase; KEGG: dde:Dde_1124 aromatic amino acid decarboxylase; Aromatic-L-amino-acid decarboxylase complement(3686346..3687878) Desulfovibrio vulgaris str. 'Miyazaki F' 7174858 YP_002437322.1 CDS DvMF_2917 NC_011769.1 3688147 3688953 R PFAM: phosphatidate cytidylyltransferase; KEGG: dde:Dde_1125 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(3688147..3688953) Desulfovibrio vulgaris str. 'Miyazaki F' 7174859 YP_002437323.1 CDS DvMF_2918 NC_011769.1 3688950 3689702 R KEGG: dde:Dde_1126 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(3688950..3689702) Desulfovibrio vulgaris str. 'Miyazaki F' 7174860 YP_002437324.1 CDS frr NC_011769.1 3689873 3690433 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3689873..3690433) Desulfovibrio vulgaris str. 'Miyazaki F' 7174861 YP_002437325.1 CDS pyrH NC_011769.1 3690439 3691155 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3690439..3691155) Desulfovibrio vulgaris str. 'Miyazaki F' 7174862 YP_002437326.1 CDS DvMF_2921 NC_011769.1 3691274 3692065 R PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1130 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(3691274..3692065) Desulfovibrio vulgaris str. 'Miyazaki F' 7174863 YP_002437327.1 CDS DvMF_2922 NC_011769.1 3692137 3693156 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mrd:Mrad2831_1187 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3692137..3693156) Desulfovibrio vulgaris str. 'Miyazaki F' 7174864 YP_002437328.1 CDS DvMF_2923 NC_011769.1 3693333 3693935 R TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; translation elongation factor EFTs/EF1B dimerisation; KEGG: dde:Dde_1132 translation elongation factor Ts (EF-Ts); translation elongation factor Ts complement(3693333..3693935) Desulfovibrio vulgaris str. 'Miyazaki F' 7174865 YP_002437329.1 CDS rpsB NC_011769.1 3693970 3694785 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(3693970..3694785) Desulfovibrio vulgaris str. 'Miyazaki F' 7174866 YP_002437330.1 CDS DvMF_2925 NC_011769.1 3695113 3695895 R PFAM: fumarylacetoacetate hydrolase; KEGG: dde:Dde_1138 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(3695113..3695895) Desulfovibrio vulgaris str. 'Miyazaki F' 7174867 YP_002437331.1 CDS DvMF_2926 NC_011769.1 3696045 3697706 R PFAM: beta-lactamase; RNA-metabolising metallo-beta-lactamase; KEGG: dde:Dde_1137 metallo-beta-lactamase family protein; beta-lactamase complement(3696045..3697706) Desulfovibrio vulgaris str. 'Miyazaki F' 7174868 YP_002437332.1 CDS garR NC_011769.1 3698129 3699028 R catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase complement(3698129..3699028) Desulfovibrio vulgaris str. 'Miyazaki F' 7174869 YP_002437333.1 CDS DvMF_2928 NC_011769.1 3699108 3700340 R PFAM: methicillin resistance protein; KEGG: dde:Dde_1247 femAB family protein; methicillin resistance protein complement(3699108..3700340) Desulfovibrio vulgaris str. 'Miyazaki F' 7174870 YP_002437334.1 CDS DvMF_2929 NC_011769.1 3700524 3701315 R KEGG: dac:Daci_2118 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: xylose isomerase; hydroxypyruvate isomerase complement(3700524..3701315) Desulfovibrio vulgaris str. 'Miyazaki F' 7174871 YP_002437335.1 CDS DvMF_2930 NC_011769.1 3701469 3702350 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dra:DR_0815 GntR family transcriptional regulator; GntR family transcriptional regulator complement(3701469..3702350) Desulfovibrio vulgaris str. 'Miyazaki F' 7174872 YP_002437336.1 CDS DvMF_2931 NC_011769.1 3702681 3704747 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3702681..3704747) Desulfovibrio vulgaris str. 'Miyazaki F' 7174873 YP_002437337.1 CDS DvMF_2932 NC_011769.1 3705472 3705984 D KEGG: dde:Dde_2740 hypothetical protein; hypothetical protein 3705472..3705984 Desulfovibrio vulgaris str. 'Miyazaki F' 7174874 YP_002437338.1 CDS DvMF_2933 NC_011769.1 3706156 3706419 D PFAM: glutaredoxin; KEGG: dde:Dde_2739 hypothetical protein; glutaredoxin 3706156..3706419 Desulfovibrio vulgaris str. 'Miyazaki F' 7174875 YP_002437339.1 CDS DvMF_2934 NC_011769.1 3706416 3706760 D KEGG: dde:Dde_2738 hypothetical protein; hypothetical protein 3706416..3706760 Desulfovibrio vulgaris str. 'Miyazaki F' 7174876 YP_002437340.1 CDS DvMF_2935 NC_011769.1 3706874 3707800 R PFAM: PfkB domain protein; KEGG: dde:Dde_1489 carbohydrate kinase; PfkB domain-containing protein complement(3706874..3707800) Desulfovibrio vulgaris str. 'Miyazaki F' 7174877 YP_002437341.1 CDS DvMF_2936 NC_011769.1 3707802 3708122 R PFAM: CutA1 divalent ion tolerance protein; KEGG: dde:Dde_1490 periplasmic divalent cation tolerance protein CutA; CutA1 divalent ion tolerance protein complement(3707802..3708122) Desulfovibrio vulgaris str. 'Miyazaki F' 7174878 YP_002437342.1 CDS DvMF_2937 NC_011769.1 3708736 3709581 D KEGG: dde:Dde_1491 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; endonuclease III/Nth; endonuclease III 3708736..3709581 Desulfovibrio vulgaris str. 'Miyazaki F' 7174879 YP_002437343.1 CDS DvMF_2938 NC_011769.1 3709578 3710411 D KEGG: dde:Dde_1492 hypothetical protein; hypothetical protein 3709578..3710411 Desulfovibrio vulgaris str. 'Miyazaki F' 7174880 YP_002437344.1 CDS DvMF_2939 NC_011769.1 3710745 3711716 D PFAM: response regulator receiver; CheW domain protein; KEGG: dde:Dde_1493 response regulator receiver (CheY-like) modulated CheW protein; chemotaxis protein CheW 3710745..3711716 Desulfovibrio vulgaris str. 'Miyazaki F' 7174881 YP_002437345.1 CDS DvMF_2940 NC_011769.1 3711993 3712325 D PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1849 hypothetical protein; type IV pilus assembly PilZ 3711993..3712325 Desulfovibrio vulgaris str. 'Miyazaki F' 7174882 YP_002437346.1 CDS DvMF_2941 NC_011769.1 3712497 3713666 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(3712497..3713666) Desulfovibrio vulgaris str. 'Miyazaki F' 7174883 YP_002437347.1 CDS panC NC_011769.1 3713801 3714652 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(3713801..3714652) Desulfovibrio vulgaris str. 'Miyazaki F' 7174884 YP_002437348.1 CDS DvMF_2943 NC_011769.1 3714966 3715706 D KEGG: dde:Dde_1499 hypothetical protein; hypothetical protein 3714966..3715706 Desulfovibrio vulgaris str. 'Miyazaki F' 7174885 YP_002437349.1 CDS DvMF_2944 NC_011769.1 3715860 3716942 R KEGG: rfr:Rfer_2442 hypothetical protein; hypothetical protein complement(3715860..3716942) Desulfovibrio vulgaris str. 'Miyazaki F' 7174886 YP_002437350.1 CDS DvMF_2945 NC_011769.1 3717094 3717591 R PFAM: cupin; KEGG: mes:Meso_3909 cupin 2, conserved barrel; cupin complement(3717094..3717591) Desulfovibrio vulgaris str. 'Miyazaki F' 7174887 YP_002437351.1 CDS DvMF_2946 NC_011769.1 3717737 3718792 R KEGG: ade:Adeh_3213 hypothetical protein; hypothetical protein complement(3717737..3718792) Desulfovibrio vulgaris str. 'Miyazaki F' 7174888 YP_002437352.1 CDS DvMF_2947 NC_011769.1 3718814 3719548 R PFAM: carboxymuconolactone decarboxylase; KEGG: gbm:Gbem_3979 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(3718814..3719548) Desulfovibrio vulgaris str. 'Miyazaki F' 7174889 YP_002437353.1 CDS DvMF_2948 NC_011769.1 3719776 3720675 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator; KEGG: emi:Emin_0877 AraC family transcriptional regulator; AraC family transcriptional regulator complement(3719776..3720675) Desulfovibrio vulgaris str. 'Miyazaki F' 7174890 YP_002437354.1 CDS panB NC_011769.1 3720852 3721754 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(3720852..3721754) Desulfovibrio vulgaris str. 'Miyazaki F' 7174891 YP_002437355.1 CDS DvMF_2950 NC_011769.1 3722262 3723152 D PFAM: flagellin domain protein; KEGG: dde:Dde_1502 flagellin; flagellin domain-containing protein 3722262..3723152 Desulfovibrio vulgaris str. 'Miyazaki F' 7174892 YP_002437356.1 CDS DvMF_2951 NC_011769.1 3723375 3724010 D KEGG: dde:Dde_1503 hypothetical protein; hypothetical protein 3723375..3724010 Desulfovibrio vulgaris str. 'Miyazaki F' 7174893 YP_002437357.1 CDS DvMF_2952 NC_011769.1 3724329 3724952 D PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1504 metal dependent phosphohydrolase; metal dependent phosphohydrolase 3724329..3724952 Desulfovibrio vulgaris str. 'Miyazaki F' 7174894 YP_002437358.1 CDS DvMF_2953 NC_011769.1 3725138 3726358 R PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1335 ABC transporter permease; hypothetical protein complement(3725138..3726358) Desulfovibrio vulgaris str. 'Miyazaki F' 7174895 YP_002437359.1 CDS DvMF_2954 NC_011769.1 3726358 3727689 R PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0268 ABC-type transporter, permease; ABC transporter permease complement(3726358..3727689) Desulfovibrio vulgaris str. 'Miyazaki F' 7174896 YP_002437360.1 CDS DvMF_2955 NC_011769.1 3727686 3728438 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1339 ATPase; ABC transporter complement(3727686..3728438) Desulfovibrio vulgaris str. 'Miyazaki F' 7174897 YP_002437361.1 CDS DvMF_2956 NC_011769.1 3728452 3729744 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: dde:Dde_1340 secretion protein HlyD; RND family efflux transporter MFP subunit complement(3728452..3729744) Desulfovibrio vulgaris str. 'Miyazaki F' 7174898 YP_002437362.1 CDS DvMF_2957 NC_011769.1 3730091 3731137 R KEGG: dde:Dde_1342 hypothetical protein; hypothetical protein complement(3730091..3731137) Desulfovibrio vulgaris str. 'Miyazaki F' 7174899 YP_002437363.1 CDS DvMF_2958 NC_011769.1 3731469 3731897 D PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1343 HSP20 family protein; heat shock protein Hsp20 3731469..3731897 Desulfovibrio vulgaris str. 'Miyazaki F' 7174900 YP_002437364.1 CDS DvMF_2959 NC_011769.1 3731897 3732328 D PFAM: heat shock protein Hsp20; KEGG: dde:Dde_1344 HSP20 family protein; heat shock protein Hsp20 3731897..3732328 Desulfovibrio vulgaris str. 'Miyazaki F' 7174901 YP_002437365.1 CDS DvMF_2960 NC_011769.1 3732664 3733611 R PFAM: Mg2 transporter protein CorA family protein; KEGG: lip:LI0097 CorA, CorA-like Mg2+ transporter protein; Mg2 transporter protein CorA family protein complement(3732664..3733611) Desulfovibrio vulgaris str. 'Miyazaki F' 7174902 YP_002437366.1 CDS DvMF_2961 NC_011769.1 3734657 3735172 D KEGG: dde:Dde_1345 hypothetical protein; hypothetical protein 3734657..3735172 Desulfovibrio vulgaris str. 'Miyazaki F' 7174903 YP_002437367.1 CDS DvMF_2962 NC_011769.1 3735272 3736075 R TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; KEGG: rci:RCIX2221 nucleoside 5'-monophosphate phosphohydrolase (survival protein); stationary-phase survival protein SurE complement(3735272..3736075) Desulfovibrio vulgaris str. 'Miyazaki F' 7174904 YP_002437368.1 CDS DvMF_2963 NC_011769.1 3736161 3739916 R KEGG: dps:DP3110 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(3736161..3739916) Desulfovibrio vulgaris str. 'Miyazaki F' 7174905 YP_002437369.1 CDS DvMF_2964 NC_011769.1 3740246 3740512 D PFAM: RNP-1 like RNA-binding protein; KEGG: nis:NIS_0278 RNA-binding protein RNP-1; RNP-1 like RNA-binding protein 3740246..3740512 Desulfovibrio vulgaris str. 'Miyazaki F' 7174906 YP_002437370.1 CDS DvMF_2965 NC_011769.1 3740716 3741174 D PFAM: 17 kDa surface antigen; KEGG: dde:Dde_1150 outer membrane lipoprotein-like; 17 kDa surface antigen 3740716..3741174 Desulfovibrio vulgaris str. 'Miyazaki F' 7174907 YP_002437371.1 CDS DvMF_2966 NC_011769.1 3741347 3741901 D KEGG: dde:Dde_1349 hypothetical protein; hypothetical protein 3741347..3741901 Desulfovibrio vulgaris str. 'Miyazaki F' 7174908 YP_002437372.1 CDS DvMF_2967 NC_011769.1 3742086 3743000 D TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1350 RarD protein; RarD protein, DMT superfamily transporter 3742086..3743000 Desulfovibrio vulgaris str. 'Miyazaki F' 7174909 YP_002437373.1 CDS DvMF_2968 NC_011769.1 3743181 3744251 D PFAM: extracellular solute-binding protein family 1; KEGG: sit:TM1040_3635 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3743181..3744251 Desulfovibrio vulgaris str. 'Miyazaki F' 7174910 YP_002437374.1 CDS DvMF_2969 NC_011769.1 3744570 3745826 D PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: hch:HCH_01472 ABC-type spermidine/putrescine transporter, ATPase components; spermidine/putrescine ABC transporter ATPase 3744570..3745826 Desulfovibrio vulgaris str. 'Miyazaki F' 7174911 YP_002437375.1 CDS DvMF_2970 NC_011769.1 3745823 3746728 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: hch:HCH_01473 ABC-type spermidine/putrescine transporter, permease I; spermidine/putrescine ABC transporter permease 3745823..3746728 Desulfovibrio vulgaris str. 'Miyazaki F' 7174912 YP_002437376.1 CDS DvMF_2971 NC_011769.1 3746725 3747585 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transporter, permease II; spermidine/putrescine ABC transporter permease 3746725..3747585 Desulfovibrio vulgaris str. 'Miyazaki F' 7174913 YP_002437377.1 CDS DvMF_2972 NC_011769.1 3747860 3748771 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sfu:Sfum_0868 glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 3747860..3748771 Desulfovibrio vulgaris str. 'Miyazaki F' 7174914 YP_002437378.1 CDS DvMF_2973 NC_011769.1 3749108 3750070 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ava:Ava_1542 hypothetical protein; hypothetical protein 3749108..3750070 Desulfovibrio vulgaris str. 'Miyazaki F' 7174915 YP_002437379.1 CDS DvMF_2974 NC_011769.1 3750158 3750640 R PFAM: helix-turn-helix HxlR type; KEGG: dde:Dde_1352 transcriptional regulator; HxlR family transcriptional regulator complement(3750158..3750640) Desulfovibrio vulgaris str. 'Miyazaki F' 7174916 YP_002437380.1 CDS DvMF_2975 NC_011769.1 3750929 3751438 D PFAM: nitroreductase; KEGG: mba:Mbar_A1379 NADPH-flavin oxidoreductase; nitroreductase 3750929..3751438 Desulfovibrio vulgaris str. 'Miyazaki F' 7174917 YP_002437381.1 CDS DvMF_2976 NC_011769.1 3751440 3751628 D PFAM: 4-oxalocrotonate tautomerase; KEGG: msi:Msm_0688 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 3751440..3751628 Desulfovibrio vulgaris str. 'Miyazaki F' 7174918 YP_002437382.1 CDS DvMF_2977 NC_011769.1 3751742 3752860 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pca:Pcar_0069 NADH:flavin oxidoreductases, Old Yellow enzyme family; NADH:flavin oxidoreductase 3751742..3752860 Desulfovibrio vulgaris str. 'Miyazaki F' 7174919 YP_002437383.1 CDS DvMF_2978 NC_011769.1 3753038 3753370 D KEGG: dde:Dde_1354 hypothetical protein; hypothetical protein 3753038..3753370 Desulfovibrio vulgaris str. 'Miyazaki F' 7174920 YP_002437384.1 CDS DvMF_2979 NC_011769.1 3753510 3754124 D PFAM: NADPH-dependent FMN reductase; KEGG: mbn:Mboo_0650 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 3753510..3754124 Desulfovibrio vulgaris str. 'Miyazaki F' 7174921 YP_002437385.1 CDS DvMF_2980 NC_011769.1 3754410 3754916 D PFAM: rhodanese; KEGG: dde:Dde_1355 rhodanese-like protein; rhodanese 3754410..3754916 Desulfovibrio vulgaris str. 'Miyazaki F' 7174922 YP_002437386.1 CDS DvMF_2981 NC_011769.1 3755027 3755596 D PFAM: VanZ family protein; KEGG: xfn:XfasM23_0713 VanZ family protein; VanZ family protein 3755027..3755596 Desulfovibrio vulgaris str. 'Miyazaki F' 7174923 YP_002437387.1 CDS DvMF_2982 NC_011769.1 3755778 3755999 R PFAM: SlyX family protein; KEGG: dde:Dde_1356 SlyX protein; SlyX family protein complement(3755778..3755999) Desulfovibrio vulgaris str. 'Miyazaki F' 7174924 YP_002437388.1 CDS DvMF_2983 NC_011769.1 3756097 3756564 R PFAM: protein of unknown function DUF55; KEGG: dde:Dde_1357 hypothetical protein; hypothetical protein complement(3756097..3756564) Desulfovibrio vulgaris str. 'Miyazaki F' 7174925 YP_002437389.1 CDS DvMF_2984 NC_011769.1 3756741 3759431 D KEGG: rno:84352 collagen, type I, alpha 2; hypothetical protein 3756741..3759431 Desulfovibrio vulgaris str. 'Miyazaki F' 7174926 YP_002437390.1 CDS DvMF_2985 NC_011769.1 3759533 3761848 R PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dde:Dde_1359 elongator protein 3/MiaB/NifB; radical SAM protein complement(3759533..3761848) Desulfovibrio vulgaris str. 'Miyazaki F' 7174927 YP_002437391.1 CDS DvMF_2986 NC_011769.1 3762159 3765845 D KEGG: dde:Dde_1360 GAF sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; hypothetical protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 3762159..3765845 Desulfovibrio vulgaris str. 'Miyazaki F' 7174928 YP_002437392.1 CDS DvMF_2987 NC_011769.1 3766053 3766406 R KEGG: dde:Dde_1362 EF hand domain-containing protein; EF hand domain-containing protein complement(3766053..3766406) Desulfovibrio vulgaris str. 'Miyazaki F' 7174929 YP_002437393.1 CDS DvMF_2988 NC_011769.1 3766767 3768821 R PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(3766767..3768821) Desulfovibrio vulgaris str. 'Miyazaki F' 7174930 YP_002437394.1 CDS DvMF_2989 NC_011769.1 3769312 3770694 R PFAM: Na+/H+ antiporter NhaA; KEGG: dde:Dde_2771 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA complement(3769312..3770694) Desulfovibrio vulgaris str. 'Miyazaki F' 7174932 YP_002437395.1 CDS DvMF_2990 NC_011769.1 3771100 3771780 D PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: rpe:RPE_0932 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 3771100..3771780 Desulfovibrio vulgaris str. 'Miyazaki F' 7174933 YP_002437396.1 CDS DvMF_2991 NC_011769.1 3771865 3773058 D PFAM: radical SAM protein; KEGG: pcl:Pcal_0853 radical SAM protein; radical SAM protein 3771865..3773058 Desulfovibrio vulgaris str. 'Miyazaki F' 7174934 YP_002437397.1 CDS DvMF_2992 NC_011769.1 3773202 3776096 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rca:Rcas_0372 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase complement(3773202..3776096) Desulfovibrio vulgaris str. 'Miyazaki F' 7174935 YP_002437398.1 CDS DvMF_2993 NC_011769.1 3776852 3778357 D TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dde:Dde_1365 lysyl-tRNA synthetase; lysyl-tRNA synthetase 3776852..3778357 Desulfovibrio vulgaris str. 'Miyazaki F' 7174937 YP_002437399.1 CDS DvMF_2994 NC_011769.1 3778368 3779621 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dde:Dde_1366 LolC/E family lipoprotein releasing system, transmembrane protein; lipoprotein releasing system transmembrane protein LolC/E family 3778368..3779621 Desulfovibrio vulgaris str. 'Miyazaki F' 7174938 YP_002437400.1 CDS DvMF_2995 NC_011769.1 3779618 3780382 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1367 ATPase; ABC transporter 3779618..3780382 Desulfovibrio vulgaris str. 'Miyazaki F' 7174939 YP_002437401.1 CDS DvMF_2996 NC_011769.1 3780366 3783053 D TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dde:Dde_1368 OMP85 family outer membrane protein; outer membrane protein assembly complex, YaeT protein 3780366..3783053 Desulfovibrio vulgaris str. 'Miyazaki F' 7174940 YP_002437402.1 CDS DvMF_2997 NC_011769.1 3783460 3785829 D PFAM: cell wall hydrolase/autolysin; KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 3783460..3785829 Desulfovibrio vulgaris str. 'Miyazaki F' 7174941 YP_002437403.1 CDS DvMF_2998 NC_011769.1 3786068 3786595 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: dde:Dde_1371 outer membrane protein OmpH; outer membrane chaperone Skp 3786068..3786595 Desulfovibrio vulgaris str. 'Miyazaki F' 7174942 YP_002437404.1 CDS DvMF_2999 NC_011769.1 3786606 3787637 D TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: dde:Dde_1372 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 3786606..3787637 Desulfovibrio vulgaris str. 'Miyazaki F' 7174943 YP_002437405.1 CDS fabZ NC_011769.1 3787639 3788103 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 3787639..3788103 Desulfovibrio vulgaris str. 'Miyazaki F' 7174944 YP_002437406.1 CDS DvMF_3001 NC_011769.1 3788103 3788903 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 3788103..3788903 Desulfovibrio vulgaris str. 'Miyazaki F' 7174945 YP_002437407.1 CDS DvMF_3002 NC_011769.1 3789088 3789933 D PFAM: protein of unknown function DUF1009; KEGG: dde:Dde_1375 hypothetical protein; hypothetical protein 3789088..3789933 Desulfovibrio vulgaris str. 'Miyazaki F' 7174946 YP_002437408.1 CDS DvMF_3003 NC_011769.1 3790053 3791237 D PFAM: aminotransferase class I and II; KEGG: rci:RRC4 aminotransferase; GntR family transcriptional regulator 3790053..3791237 Desulfovibrio vulgaris str. 'Miyazaki F' 7174947 YP_002437409.1 CDS DvMF_3004 NC_011769.1 3791388 3791849 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mla:Mlab_1007 hypothetical protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding protein complement(3791388..3791849) Desulfovibrio vulgaris str. 'Miyazaki F' 7174948 YP_002437410.1 CDS DvMF_3005 NC_011769.1 3792047 3793507 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cbf:CLI_0717 transcriptional regulator, GntR family/aminotransferase; GntR family transcriptional regulator 3792047..3793507 Desulfovibrio vulgaris str. 'Miyazaki F' 7174949 YP_002437411.1 CDS DvMF_3006 NC_011769.1 3793616 3794419 D catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 3793616..3794419 Desulfovibrio vulgaris str. 'Miyazaki F' 7174950 YP_002437412.1 CDS thiE NC_011769.1 3794425 3795066 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 3794425..3795066 Desulfovibrio vulgaris str. 'Miyazaki F' 7174951 YP_002437413.1 CDS DvMF_3008 NC_011769.1 3795294 3795629 D PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_1380 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 3795294..3795629 Desulfovibrio vulgaris str. 'Miyazaki F' 7174952 YP_002437414.1 CDS DvMF_3009 NC_011769.1 3795729 3796493 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: dde:Dde_1381 ferric reductase-like; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(3795729..3796493) Desulfovibrio vulgaris str. 'Miyazaki F' 7174953 YP_002437415.1 CDS DvMF_3010 NC_011769.1 3796862 3798667 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_1399 ATPase; Fis family transcriptional regulator complement(3796862..3798667) Desulfovibrio vulgaris str. 'Miyazaki F' 7174954 YP_002437416.1 CDS DvMF_3011 NC_011769.1 3799275 3800411 D TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; KEGG: dde:Dde_1400 signal transduction protein; metal dependent phosphohydrolase 3799275..3800411 Desulfovibrio vulgaris str. 'Miyazaki F' 7174955 YP_002437417.1 CDS DvMF_3012 NC_011769.1 3800563 3802239 R KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I; hypothetical protein complement(3800563..3802239) Desulfovibrio vulgaris str. 'Miyazaki F' 7174956 YP_002437418.1 CDS DvMF_3013 NC_011769.1 3802211 3802933 R KEGG: pma:Pro1264 hypothetical protein; hypothetical protein complement(3802211..3802933) Desulfovibrio vulgaris str. 'Miyazaki F' 7174957 YP_002437419.1 CDS DvMF_3014 NC_011769.1 3803116 3803847 R KEGG: mac:MA2205 hypothetical protein; hypothetical protein complement(3803116..3803847) Desulfovibrio vulgaris str. 'Miyazaki F' 7174958 YP_002437420.1 CDS DvMF_3015 NC_011769.1 3804076 3805347 R PFAM: aminotransferase class I and II; KEGG: dde:Dde_1401 L-threonine O-3-phosphate decarboxylase; class I and II aminotransferase complement(3804076..3805347) Desulfovibrio vulgaris str. 'Miyazaki F' 7174959 YP_002437421.1 CDS DvMF_3016 NC_011769.1 3805340 3806461 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1402 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(3805340..3806461) Desulfovibrio vulgaris str. 'Miyazaki F' 7174960 YP_002437422.1 CDS DvMF_3017 NC_011769.1 3806565 3807647 R PFAM: glycosyl transferase group 1; KEGG: lip:LI0824 glycosyltransferase; group 1 glycosyl transferase complement(3806565..3807647) Desulfovibrio vulgaris str. 'Miyazaki F' 7174961 YP_002437423.1 CDS DvMF_3018 NC_011769.1 3807644 3808984 R PFAM: O-antigen polymerase; KEGG: lip:LI0825 lipid A core-O-antigen ligase and related enzymes; O-antigen polymerase complement(3807644..3808984) Desulfovibrio vulgaris str. 'Miyazaki F' 7174962 YP_002437424.1 CDS DvMF_3019 NC_011769.1 3809053 3810165 R PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0593 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(3809053..3810165) Desulfovibrio vulgaris str. 'Miyazaki F' 7174963 YP_002437425.1 CDS DvMF_3020 NC_011769.1 3810564 3812063 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: dde:Dde_1405 two component Fis family transcriptional regulator; Fis family transcriptional regulator 3810564..3812063 Desulfovibrio vulgaris str. 'Miyazaki F' 7174964 YP_002437426.1 CDS DvMF_3021 NC_011769.1 3812442 3814367 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 3812442..3814367 Desulfovibrio vulgaris str. 'Miyazaki F' 7174965 YP_002437427.1 CDS DvMF_3022 NC_011769.1 3814500 3816392 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dde:Dde_1407 peptidyl-prolyl cis-trans isomerse domain-containing protein; PpiC-type peptidyl-prolyl cis-trans isomerase 3814500..3816392 Desulfovibrio vulgaris str. 'Miyazaki F' 7174966 YP_002437428.1 CDS DvMF_3023 NC_011769.1 3816895 3818472 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cte:CT0498 ammonium transporter; ammonium transporter 3816895..3818472 Desulfovibrio vulgaris str. 'Miyazaki F' 7174967 YP_002437429.1 CDS DvMF_3024 NC_011769.1 3818482 3818820 D PFAM: nitrogen regulatory protein P-II; KEGG: sul:SYO3AOP1_0047 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3818482..3818820 Desulfovibrio vulgaris str. 'Miyazaki F' 7174968 YP_002437430.1 CDS DvMF_3025 NC_011769.1 3819131 3819622 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 3819131..3819622 Desulfovibrio vulgaris str. 'Miyazaki F' 7174969 YP_002437431.1 CDS DvMF_3026 NC_011769.1 3819757 3820899 D PFAM: basic membrane lipoprotein; KEGG: dde:Dde_1507 Bmp family membrane protein; basic membrane lipoprotein 3819757..3820899 Desulfovibrio vulgaris str. 'Miyazaki F' 7174970 YP_002437432.1 CDS DvMF_3027 NC_011769.1 3820929 3822002 D PFAM: inner-membrane translocator; KEGG: dde:Dde_1508 branched-chain amino acid ABC transporter permease; inner-membrane translocator 3820929..3822002 Desulfovibrio vulgaris str. 'Miyazaki F' 7174971 YP_002437433.1 CDS DvMF_3028 NC_011769.1 3822004 3822930 D PFAM: inner-membrane translocator; KEGG: dde:Dde_1509 branched chain amino acid ABC transporter permease; inner-membrane translocator 3822004..3822930 Desulfovibrio vulgaris str. 'Miyazaki F' 7174972 YP_002437434.1 CDS DvMF_3029 NC_011769.1 3822935 3824548 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1510 ATPase; ABC transporter 3822935..3824548 Desulfovibrio vulgaris str. 'Miyazaki F' 7174973 YP_002437435.1 CDS DvMF_3030 NC_011769.1 3824685 3824996 R TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: ank:AnaeK_2303 regulatory protein, FmdB family; FmdB family regulatory protein complement(3824685..3824996) Desulfovibrio vulgaris str. 'Miyazaki F' 7174974 YP_002437436.1 CDS DvMF_3031 NC_011769.1 3825477 3826064 D TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: dde:Dde_1169 peptidase C56, PfpI; PfpI family intracellular protease 3825477..3826064 Desulfovibrio vulgaris str. 'Miyazaki F' 7174975 YP_002437437.1 CDS DvMF_3032 NC_011769.1 3826332 3827222 D PFAM: dienelactone hydrolase; KEGG: gbm:Gbem_2303 dienelactone hydrolase; dienelactone hydrolase 3826332..3827222 Desulfovibrio vulgaris str. 'Miyazaki F' 7174976 YP_002437438.1 CDS DvMF_3033 NC_011769.1 3827354 3828250 R KEGG: lip:LI0093 hypothetical protein; hypothetical protein complement(3827354..3828250) Desulfovibrio vulgaris str. 'Miyazaki F' 7174977 YP_002437439.1 CDS DvMF_3034 NC_011769.1 3828930 3829805 D KEGG: dde:Dde_2525 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 3828930..3829805 Desulfovibrio vulgaris str. 'Miyazaki F' 7174978 YP_002437440.1 CDS DvMF_3035 NC_011769.1 3830586 3831611 D PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein; glycosyl transferase family protein 3830586..3831611 Desulfovibrio vulgaris str. 'Miyazaki F' 7174979 YP_002437441.1 CDS DvMF_3036 NC_011769.1 3832307 3834502 D PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: dde:Dde_1301 thiol:disulfide interchange protein-like; cytochrome C biogenesis protein transmembrane region 3832307..3834502 Desulfovibrio vulgaris str. 'Miyazaki F' 7174981 YP_002437442.1 CDS DvMF_3037 NC_011769.1 3834657 3835175 R KEGG: wsu:WS1185 hypothetical protein; hypothetical protein complement(3834657..3835175) Desulfovibrio vulgaris str. 'Miyazaki F' 7174982 YP_002437443.1 CDS DvMF_3038 NC_011769.1 3835379 3836008 R PFAM: regulatory protein TetR; KEGG: gme:Gmet_0803 TetR family transcriptional regulator; TetR family transcriptional regulator complement(3835379..3836008) Desulfovibrio vulgaris str. 'Miyazaki F' 7174983 YP_002437444.1 CDS DvMF_3039 NC_011769.1 3836186 3837445 R PFAM: peptidase M24; KEGG: dde:Dde_1305 M24 family peptidase; peptidase M24 complement(3836186..3837445) Desulfovibrio vulgaris str. 'Miyazaki F' 7174984 YP_002437445.1 CDS DvMF_3040 NC_011769.1 3837889 3838311 D KEGG: dde:Dde_1304 coenzyme A binding protein; coenzyme A binding protein 3837889..3838311 Desulfovibrio vulgaris str. 'Miyazaki F' 7174985 YP_002437446.1 CDS DvMF_3041 NC_011769.1 3838308 3838835 D PFAM: protein of unknown function UPF0153; KEGG: dde:Dde_1303 hypothetical protein; hypothetical protein 3838308..3838835 Desulfovibrio vulgaris str. 'Miyazaki F' 7174986 YP_002437447.1 CDS DvMF_3042 NC_011769.1 3838940 3839908 D PFAM: heat shock protein DnaJ domain protein; KEGG: dde:Dde_1302 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein 3838940..3839908 Desulfovibrio vulgaris str. 'Miyazaki F' 7174987 YP_002437448.1 CDS DvMF_3043 NC_011769.1 3840003 3840974 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_2856 hypothetical protein; hypothetical protein complement(3840003..3840974) Desulfovibrio vulgaris str. 'Miyazaki F' 7174988 YP_002437449.1 CDS DvMF_3044 NC_011769.1 3841260 3842492 D KEGG: dde:Dde_2854 hypothetical protein; hypothetical protein 3841260..3842492 Desulfovibrio vulgaris str. 'Miyazaki F' 7174989 YP_002437450.1 CDS DvMF_3045 NC_011769.1 3842707 3843156 R KEGG: dde:Dde_1443 hypothetical protein; hypothetical protein complement(3842707..3843156) Desulfovibrio vulgaris str. 'Miyazaki F' 7174990 YP_002437451.1 CDS DvMF_3046 NC_011769.1 3843512 3844156 D PFAM: cobalbumin biosynthesis protein; KEGG: gme:Gmet_0466 adenosylcobinamide kinase; cobalbumin biosynthesis protein 3843512..3844156 Desulfovibrio vulgaris str. 'Miyazaki F' 7174991 YP_002437452.1 CDS DvMF_3047 NC_011769.1 3844535 3845275 D KEGG: lip:LI0104 NA; hypothetical protein 3844535..3845275 Desulfovibrio vulgaris str. 'Miyazaki F' 7174992 YP_002437453.1 CDS DvMF_3048 NC_011769.1 3845869 3846501 R hypothetical protein complement(3845869..3846501) Desulfovibrio vulgaris str. 'Miyazaki F' 7174994 YP_002437454.1 CDS DvMF_3049 NC_011769.1 3846884 3847570 D PFAM: protein of unknown function DUF554; KEGG: dde:Dde_2488 hypothetical protein; hypothetical protein 3846884..3847570 Desulfovibrio vulgaris str. 'Miyazaki F' 7174995 YP_002437455.1 CDS DvMF_3050 NC_011769.1 3848195 3851590 D TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter related; KEGG: dde:Dde_2486 excinuclease ABC subunit A; excinuclease ABC subunit A 3848195..3851590 Desulfovibrio vulgaris str. 'Miyazaki F' 7174996 YP_002437456.1 CDS DvMF_3051 NC_011769.1 3851950 3853206 D PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein; hypothetical protein 3851950..3853206 Desulfovibrio vulgaris str. 'Miyazaki F' 7174997 YP_002437457.1 CDS DvMF_3052 NC_011769.1 3853604 3854464 D KEGG: sfu:Sfum_1959 molybdenum ABC transporter solute-binding protein; molybdenum ABC transporter solute-binding protein 3853604..3854464 Desulfovibrio vulgaris str. 'Miyazaki F' 7174998 YP_002437458.1 CDS DvMF_3053 NC_011769.1 3854457 3855275 D KEGG: sfu:Sfum_1960 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3854457..3855275 Desulfovibrio vulgaris str. 'Miyazaki F' 7174999 YP_002437459.1 CDS DvMF_3054 NC_011769.1 3855272 3856249 D PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB; radical SAM protein 3855272..3856249 Desulfovibrio vulgaris str. 'Miyazaki F' 7175000 YP_002437460.1 CDS DvMF_3055 NC_011769.1 3856372 3857100 R TIGRFAM: peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; KEGG: eba:ebA872 peptide methionine sulfoxide reductase MsrA; peptide methionine sulfoxide reductase complement(3856372..3857100) Desulfovibrio vulgaris str. 'Miyazaki F' 7175001 YP_002437461.1 CDS DvMF_3056 NC_011769.1 3857273 3858325 R PFAM: aminoglycoside phosphotransferase; KEGG: dde:Dde_2481 hypothetical protein; aminoglycoside phosphotransferase complement(3857273..3858325) Desulfovibrio vulgaris str. 'Miyazaki F' 7175002 YP_002437462.1 CDS DvMF_3057 NC_011769.1 3858618 3860351 D PFAM: helicase; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: glo:Glov_2618 DEAD/DEAH box helicase; DEAD/DEAH box helicase 3858618..3860351 Desulfovibrio vulgaris str. 'Miyazaki F' 7175003 YP_002437463.1 CDS DvMF_3058 NC_011769.1 3860590 3861081 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 3860590..3861081 Desulfovibrio vulgaris str. 'Miyazaki F' 7175004 YP_002437464.1 CDS DvMF_3059 NC_011769.1 3861624 3862022 R KEGG: dde:Dde_2478 hypothetical protein; hypothetical protein complement(3861624..3862022) Desulfovibrio vulgaris str. 'Miyazaki F' 7175005 YP_002437465.1 CDS DvMF_3060 NC_011769.1 3862256 3864235 R PFAM: chemotaxis sensory transducer; KEGG: dde:Dde_2857 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3862256..3864235) Desulfovibrio vulgaris str. 'Miyazaki F' 7175006 YP_002437466.1 CDS DvMF_3061 NC_011769.1 3864595 3866586 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_2477 ATPase; ABC transporter 3864595..3866586 Desulfovibrio vulgaris str. 'Miyazaki F' 7175007 YP_002437467.1 CDS DvMF_3062 NC_011769.1 3866801 3868207 D PFAM: Na+/H+ antiporter NhaC; KEGG: dde:Dde_2476 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 3866801..3868207 Desulfovibrio vulgaris str. 'Miyazaki F' 7175008 YP_002437468.1 CDS groES NC_011769.1 3868743 3869030 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 3868743..3869030 Desulfovibrio vulgaris str. 'Miyazaki F' 7175009 YP_002437469.1 CDS groEL NC_011769.1 3869074 3870720 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 3869074..3870720 Desulfovibrio vulgaris str. 'Miyazaki F' 7175010 YP_002437470.1 CDS DvMF_3065 NC_011769.1 3870930 3871478 D KEGG: dde:Dde_2471 HAD family hydrolase; HAD family hydrolase 3870930..3871478 Desulfovibrio vulgaris str. 'Miyazaki F' 7175011 YP_002437471.1 CDS DvMF_3066 NC_011769.1 3871763 3872029 R KEGG: dde:Dde_2470 hypothetical protein; hypothetical protein complement(3871763..3872029) Desulfovibrio vulgaris str. 'Miyazaki F' 7175012 YP_002437472.1 CDS DvMF_3067 NC_011769.1 3872867 3874483 D PFAM: virulence factor MVIN family protein; KEGG: dde:Dde_2468 integral membrane protein MviN; virulence factor MVIN family protein 3872867..3874483 Desulfovibrio vulgaris str. 'Miyazaki F' 7175013 YP_002437473.1 CDS DvMF_3068 NC_011769.1 3874640 3875017 R KEGG: dde:Dde_2464 hypothetical protein; hypothetical protein complement(3874640..3875017) Desulfovibrio vulgaris str. 'Miyazaki F' 7175014 YP_002437474.1 CDS DvMF_3069 NC_011769.1 3875119 3875436 R hypothetical protein complement(3875119..3875436) Desulfovibrio vulgaris str. 'Miyazaki F' 7175015 YP_002437475.1 CDS DvMF_3070 NC_011769.1 3875584 3876147 R KEGG: dde:Dde_2462 hypothetical protein; hypothetical protein complement(3875584..3876147) Desulfovibrio vulgaris str. 'Miyazaki F' 7175016 YP_002437476.1 CDS DvMF_3071 NC_011769.1 3876615 3877106 R PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_0818 hypothetical protein; type IV pilus assembly PilZ complement(3876615..3877106) Desulfovibrio vulgaris str. 'Miyazaki F' 7175017 YP_002437477.1 CDS DvMF_3072 NC_011769.1 3877657 3879486 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: dde:Dde_3097 two component Fis family transcriptional regulator; Fis family transcriptional regulator 3877657..3879486 Desulfovibrio vulgaris str. 'Miyazaki F' 7175018 YP_002437478.1 CDS DvMF_3073 NC_011769.1 3879808 3881841 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3879808..3881841 Desulfovibrio vulgaris str. 'Miyazaki F' 7175019 YP_002437479.1 CDS DvMF_3074 NC_011769.1 3882183 3883274 R KEGG: dde:Dde_2457 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; response regulator receiver modulated metal dependent phosphohydrolase complement(3882183..3883274) Desulfovibrio vulgaris str. 'Miyazaki F' 7175020 YP_002437480.1 CDS DvMF_3075 NC_011769.1 3883575 3884486 R SMART: PAS domain containing protein; KEGG: dde:Dde_2456 PAS/PAC sensor protein; signal transduction histidine kinase regulating citrate/malate metabolism complement(3883575..3884486) Desulfovibrio vulgaris str. 'Miyazaki F' 7175021 YP_002437481.1 CDS DvMF_3076 NC_011769.1 3884479 3885705 R PFAM: metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_2455 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(3884479..3885705) Desulfovibrio vulgaris str. 'Miyazaki F' 7175022 YP_002437482.1 CDS DvMF_3077 NC_011769.1 3886409 3886885 D PFAM: colicin V production protein; KEGG: dde:Dde_2454 colicin V production family protein; colicin V production protein 3886409..3886885 Desulfovibrio vulgaris str. 'Miyazaki F' 7175023 YP_002437483.1 CDS mazG NC_011769.1 3887001 3887864 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3887001..3887864 Desulfovibrio vulgaris str. 'Miyazaki F' 7175024 YP_002437484.1 CDS DvMF_3079 NC_011769.1 3887864 3889366 D KEGG: dde:Dde_2452 hypothetical protein; hypothetical protein 3887864..3889366 Desulfovibrio vulgaris str. 'Miyazaki F' 7175025 YP_002437485.1 CDS DvMF_3080 NC_011769.1 3889434 3889640 R KEGG: dde:Dde_2451 hypothetical protein; hypothetical protein complement(3889434..3889640) Desulfovibrio vulgaris str. 'Miyazaki F' 7175026 YP_002437486.1 CDS DvMF_3081 NC_011769.1 3889855 3890037 D KEGG: dde:Dde_2449 hypothetical protein; hypothetical protein 3889855..3890037 Desulfovibrio vulgaris str. 'Miyazaki F' 7175027 YP_002437487.1 CDS DvMF_3082 NC_011769.1 3890266 3891459 D PFAM: protein of unknown function UPF0118; KEGG: dde:Dde_2448 hypothetical protein; hypothetical protein 3890266..3891459 Desulfovibrio vulgaris str. 'Miyazaki F' 7175028 YP_002437488.1 CDS DvMF_3083 NC_011769.1 3891763 3894993 D KEGG: dde:Dde_2447 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3891763..3894993 Desulfovibrio vulgaris str. 'Miyazaki F' 7175029 YP_002437489.1 CDS DvMF_3084 NC_011769.1 3895393 3898089 R KEGG: dde:Dde_2444 Lon-A peptidase; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA central domain protein; ATPase AAA; SMART: AAA ATPase; ATP-dependent protease La complement(3895393..3898089) Desulfovibrio vulgaris str. 'Miyazaki F' 7175030 YP_002437490.1 CDS DvMF_3085 NC_011769.1 3898109 3898447 R PFAM: acylphosphatase; KEGG: sru:SRU_2068 acylphosphatase; acylphosphatase complement(3898109..3898447) Desulfovibrio vulgaris str. 'Miyazaki F' 7175031 YP_002437491.1 CDS DvMF_3086 NC_011769.1 3898594 3899271 R PFAM: DNA repair protein RadC; KEGG: dde:Dde_2442 DNA repair protein RadC; DNA repair protein RadC complement(3898594..3899271) Desulfovibrio vulgaris str. 'Miyazaki F' 7175032 YP_002437492.1 CDS DvMF_3087 NC_011769.1 3899268 3899411 R hypothetical protein complement(3899268..3899411) Desulfovibrio vulgaris str. 'Miyazaki F' 7175033 YP_002437493.1 CDS DvMF_3088 NC_011769.1 3899415 3900566 R KEGG: dde:Dde_2441 hypothetical protein; hypothetical protein complement(3899415..3900566) Desulfovibrio vulgaris str. 'Miyazaki F' 7175034 YP_002437494.1 CDS DvMF_3089 NC_011769.1 3900658 3901176 R KEGG: dde:Dde_2440 lipoprotein; lipoprotein complement(3900658..3901176) Desulfovibrio vulgaris str. 'Miyazaki F' 7175035 YP_002437495.1 CDS leuS NC_011769.1 3901245 3903749 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(3901245..3903749) Desulfovibrio vulgaris str. 'Miyazaki F' 7175036 YP_002437496.1 CDS DvMF_3091 NC_011769.1 3904102 3904599 R TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: dde:Dde_2438 transcription antitermination factor NusB; NusB antitermination factor complement(3904102..3904599) Desulfovibrio vulgaris str. 'Miyazaki F' 7175037 YP_002437497.1 CDS ribH NC_011769.1 3904604 3905074 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(3904604..3905074) Desulfovibrio vulgaris str. 'Miyazaki F' 7175038 YP_002437498.1 CDS DvMF_3093 NC_011769.1 3905175 3906404 R KEGG: dde:Dde_2436 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3905175..3906404) Desulfovibrio vulgaris str. 'Miyazaki F' 7175039 YP_002437499.1 CDS DvMF_3094 NC_011769.1 3906494 3907186 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(3906494..3907186) Desulfovibrio vulgaris str. 'Miyazaki F' 7175040 YP_002437500.1 CDS DvMF_3095 NC_011769.1 3907229 3908488 R TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: dde:Dde_2434 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin biosynthesis protein RibD complement(3907229..3908488) Desulfovibrio vulgaris str. 'Miyazaki F' 7175041 YP_002437501.1 CDS DvMF_3096 NC_011769.1 3908493 3909041 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dde:Dde_2433 cytidine/deoxycytidylate deaminase family protein; zinc-binding CMP/dCMP deaminase complement(3908493..3909041) Desulfovibrio vulgaris str. 'Miyazaki F' 7175042 YP_002437502.1 CDS glyA NC_011769.1 3909346 3910584 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(3909346..3910584) Desulfovibrio vulgaris str. 'Miyazaki F' 7175043 YP_002437503.1 CDS DvMF_3098 NC_011769.1 3910904 3912151 R TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: dde:Dde_2431 3-oxoacyl-[acyl-carrier-protein] synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase 2 complement(3910904..3912151) Desulfovibrio vulgaris str. 'Miyazaki F' 7175044 YP_002437504.1 CDS acpP NC_011769.1 3912331 3912561 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3912331..3912561) Desulfovibrio vulgaris str. 'Miyazaki F' 7175045 YP_002437505.1 CDS DvMF_3100 NC_011769.1 3912747 3913490 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dde:Dde_2429 3-oxoacyl-[acyl-carrier-protein] reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(3912747..3913490) Desulfovibrio vulgaris str. 'Miyazaki F' 7175046 YP_002437506.1 CDS DvMF_3101 NC_011769.1 3913751 3914743 R KEGG: dde:Dde_2428 3-oxoacyl-[acyl-carrier-protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III complement(3913751..3914743) Desulfovibrio vulgaris str. 'Miyazaki F' 7175047 YP_002437507.1 CDS DvMF_3102 NC_011769.1 3914898 3915938 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(3914898..3915938) Desulfovibrio vulgaris str. 'Miyazaki F' 7175048 YP_002437508.1 CDS rpmF NC_011769.1 3915931 3916110 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(3915931..3916110) Desulfovibrio vulgaris str. 'Miyazaki F' 7175049 YP_002437509.1 CDS DvMF_3104 NC_011769.1 3916156 3916767 R PFAM: protein of unknown function DUF177; KEGG: dde:Dde_2426 hypothetical protein; hypothetical protein complement(3916156..3916767) Desulfovibrio vulgaris str. 'Miyazaki F' 7175050 YP_002437510.1 CDS rpmB NC_011769.1 3917009 3917218 D required for 70S ribosome assembly; 50S ribosomal protein L28 3917009..3917218 Desulfovibrio vulgaris str. 'Miyazaki F' 7175051 YP_002437511.1 CDS DvMF_3106 NC_011769.1 3917366 3918346 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_2424 hypothetical protein; hypothetical protein 3917366..3918346 Desulfovibrio vulgaris str. 'Miyazaki F' 7175052 YP_002437512.1 CDS DvMF_3107 NC_011769.1 3918679 3919440 D PFAM: FxsA cytoplasmic membrane protein; KEGG: dde:Dde_2422 FxsA protein; FxsA cytoplasmic membrane protein 3918679..3919440 Desulfovibrio vulgaris str. 'Miyazaki F' 7175053 YP_002437513.1 CDS DvMF_3108 NC_011769.1 3919575 3920606 D PFAM: rhomboid family protein; KEGG: dde:Dde_2421 rhomboid family protein; rhomboid family protein 3919575..3920606 Desulfovibrio vulgaris str. 'Miyazaki F' 7175054 YP_002437514.1 CDS DvMF_3109 NC_011769.1 3920751 3922748 R KEGG: dde:Dde_2420 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; dolichyl-phosphate-mannose-protein mannosyltransferase family protein complement(3920751..3922748) Desulfovibrio vulgaris str. 'Miyazaki F' 7175055 YP_002437515.1 CDS DvMF_3111 NC_011769.1 3923820 3925289 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dde:Dde_2418 MATE efflux family protein; MATE efflux family protein 3923820..3925289 Desulfovibrio vulgaris str. 'Miyazaki F' 7175057 YP_002437516.1 CDS DvMF_3112 NC_011769.1 3925482 3925784 R PFAM: protein of unknown function DUF77; KEGG: mgm:Mmc1_2182 protein of unknown function DUF77; hypothetical protein complement(3925482..3925784) Desulfovibrio vulgaris str. 'Miyazaki F' 7175058 YP_002437517.1 CDS DvMF_3113 NC_011769.1 3925819 3927588 R PFAM: protein of unknown function DUF115; KEGG: dde:Dde_2415 hypothetical protein; hypothetical protein complement(3925819..3927588) Desulfovibrio vulgaris str. 'Miyazaki F' 7175059 YP_002437518.1 CDS DvMF_3114 NC_011769.1 3927746 3930994 R KEGG: dde:Dde_2414 hypothetical protein; hypothetical protein complement(3927746..3930994) Desulfovibrio vulgaris str. 'Miyazaki F' 7175060 YP_002437519.1 CDS DvMF_3115 NC_011769.1 3931153 3931977 D PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_2413 nitroreductase family protein; nitroreductase 3931153..3931977 Desulfovibrio vulgaris str. 'Miyazaki F' 7175061 YP_002437520.1 CDS DvMF_3116 NC_011769.1 3932496 3934916 R TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; hypothetical protein; PAS fold domain protein; KEGG: dde:Dde_2411 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(3932496..3934916) Desulfovibrio vulgaris str. 'Miyazaki F' 7175062 YP_002437521.1 CDS DvMF_3117 NC_011769.1 3935084 3935626 D KEGG: dde:Dde_2410 hypothetical protein; hypothetical protein 3935084..3935626 Desulfovibrio vulgaris str. 'Miyazaki F' 7175063 YP_002437522.1 CDS DvMF_3118 NC_011769.1 3935630 3937249 R PFAM: gamma-glutamyltranspeptidase; KEGG: xcb:XC_0301 gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(3935630..3937249) Desulfovibrio vulgaris str. 'Miyazaki F' 7175064 YP_002437523.1 CDS DvMF_3119 NC_011769.1 3937450 3939222 R PFAM: protein of unknown function DUF181; KEGG: dde:Dde_2408 hypothetical protein; hypothetical protein complement(3937450..3939222) Desulfovibrio vulgaris str. 'Miyazaki F' 7175065 YP_002437524.1 CDS DvMF_3120 NC_011769.1 3940279 3941010 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(3940279..3941010) Desulfovibrio vulgaris str. 'Miyazaki F' 7175066 YP_002437525.1 CDS DvMF_3121 NC_011769.1 3941007 3941678 R KEGG: dde:Dde_1466 lipoprotein; lipoprotein complement(3941007..3941678) Desulfovibrio vulgaris str. 'Miyazaki F' 7175067 YP_002437526.1 CDS DvMF_3122 NC_011769.1 3941678 3942268 R PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dde:Dde_1467 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase complement(3941678..3942268) Desulfovibrio vulgaris str. 'Miyazaki F' 7175068 YP_002437527.1 CDS DvMF_3123 NC_011769.1 3942329 3943123 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dde:Dde_1468 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC complement(3942329..3943123) Desulfovibrio vulgaris str. 'Miyazaki F' 7175069 YP_002437528.1 CDS DvMF_3124 NC_011769.1 3943810 3944100 R TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dde:Dde_1469 twin-arginine translocation protein TatB; twin-arginine translocation protein TatB complement(3943810..3944100) Desulfovibrio vulgaris str. 'Miyazaki F' 7175070 YP_002437529.1 CDS guaA NC_011769.1 3944298 3945845 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(3944298..3945845) Desulfovibrio vulgaris str. 'Miyazaki F' 7175071 YP_002437530.1 CDS DvMF_3126 NC_011769.1 3946094 3947554 R KEGG: dde:Dde_1471 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase complement(3946094..3947554) Desulfovibrio vulgaris str. 'Miyazaki F' 7175072 YP_002437531.1 CDS DvMF_3127 NC_011769.1 3947915 3948535 R PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1473 hypothetical protein; hypothetical protein complement(3947915..3948535) Desulfovibrio vulgaris str. 'Miyazaki F' 7175073 YP_002437532.1 CDS DvMF_3128 NC_011769.1 3948525 3948665 R hypothetical protein complement(3948525..3948665) Desulfovibrio vulgaris str. 'Miyazaki F' 7175074 YP_002437533.1 CDS DvMF_3129 NC_011769.1 3948695 3949381 R PFAM: cytochrome C assembly protein; KEGG: dde:Dde_1474 cytochrome C biogenesis protein CcmC; cytochrome C assembly protein complement(3948695..3949381) Desulfovibrio vulgaris str. 'Miyazaki F' 7175075 YP_002437534.1 CDS DvMF_3130 NC_011769.1 3949465 3950142 R PFAM: cytochrome C biogenesis protein CcmB; KEGG: dde:Dde_1475 cytochrome C biogenesis protein CcmB; cytochrome C biogenesis protein CcmB complement(3949465..3950142) Desulfovibrio vulgaris str. 'Miyazaki F' 7175076 YP_002437535.1 CDS DvMF_3131 NC_011769.1 3950136 3950795 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1476 ATPase; ABC transporter complement(3950136..3950795) Desulfovibrio vulgaris str. 'Miyazaki F' 7175077 YP_002437536.1 CDS DvMF_3132 NC_011769.1 3950795 3952720 R PFAM: cytochrome C assembly protein; KEGG: dde:Dde_1477 cytochrome C biogenesis protein CcmF; cytochrome C assembly protein complement(3950795..3952720) Desulfovibrio vulgaris str. 'Miyazaki F' 7175078 YP_002437537.1 CDS DvMF_3133 NC_011769.1 3952938 3953360 R KEGG: dde:Dde_1478 cytochrome C biogenesis protein CcmE; cytochrome C biogenesis protein CcmE complement(3952938..3953360) Desulfovibrio vulgaris str. 'Miyazaki F' 7175079 YP_002437538.1 CDS DvMF_3134 NC_011769.1 3953875 3954912 R PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: dde:Dde_1479 CBS; hypothetical protein complement(3953875..3954912) Desulfovibrio vulgaris str. 'Miyazaki F' 7175080 YP_002437539.1 CDS DvMF_3135 NC_011769.1 3955170 3955871 D TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dde:Dde_1481 HAD family hydrolase; histidinol-phosphate phosphatase 3955170..3955871 Desulfovibrio vulgaris str. 'Miyazaki F' 7175081 YP_002437540.1 CDS DvMF_3136 NC_011769.1 3955868 3956902 D TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1482 heptosyltransferase family protein; lipopolysaccharide heptosyltransferase II 3955868..3956902 Desulfovibrio vulgaris str. 'Miyazaki F' 7175082 YP_002437541.1 CDS DvMF_3137 NC_011769.1 3957156 3957989 R PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dps:DP0756 ABC transporter ATP-binding protein; ABC transporter complement(3957156..3957989) Desulfovibrio vulgaris str. 'Miyazaki F' 7175083 YP_002437542.1 CDS DvMF_3138 NC_011769.1 3957986 3958783 R TIGRFAM: cobalt ABC transporter inner membrane protein CbiQ; PFAM: cobalt transporter; KEGG: dde:Dde_1192 cobalt ABC transporter permease; cobalt ABC transporter inner membrane protein CbiQ complement(3957986..3958783) Desulfovibrio vulgaris str. 'Miyazaki F' 7175084 YP_002437543.1 CDS DvMF_3139 NC_011769.1 3958790 3959404 R catalyzes the ATP-dependent transport of cobalt; cobalt transporter CbiM complement(3958790..3959404) Desulfovibrio vulgaris str. 'Miyazaki F' 7175085 YP_002437544.1 CDS DvMF_3140 NC_011769.1 3959740 3961173 R PFAM: citrate transporter; KEGG: dde:Dde_1483 hypothetical protein; citrate transporter complement(3959740..3961173) Desulfovibrio vulgaris str. 'Miyazaki F' 7175086 YP_002437545.1 CDS DvMF_3141 NC_011769.1 3961647 3962210 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dde:Dde_1484 tRNA (guanosine-2'-O-)-methyltransferase; tRNA guanosine-2'-O-methyltransferase 3961647..3962210 Desulfovibrio vulgaris str. 'Miyazaki F' 7175087 YP_002437546.1 CDS DvMF_3142 NC_011769.1 3962380 3963672 R PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1485 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(3962380..3963672) Desulfovibrio vulgaris str. 'Miyazaki F' 7175088 YP_002437547.1 CDS DvMF_3143 NC_011769.1 3963731 3965530 R PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1486 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(3963731..3965530) Desulfovibrio vulgaris str. 'Miyazaki F' 7175089 YP_002437548.1 CDS DvMF_3144 NC_011769.1 3965662 3967359 D PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1487 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 3965662..3967359 Desulfovibrio vulgaris str. 'Miyazaki F' 7175090 YP_002437549.1 CDS DvMF_3145 NC_011769.1 3967683 3969020 R TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid complement(3967683..3969020) Desulfovibrio vulgaris str. 'Miyazaki F' 7175091 YP_002437550.1 CDS DvMF_3146 NC_011769.1 3969273 3970139 R PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1423 polar amino acid transporter substrate-binding proetin; family 3 extracellular solute-binding protein complement(3969273..3970139) Desulfovibrio vulgaris str. 'Miyazaki F' 7175092 YP_002437551.1 CDS DvMF_3147 NC_011769.1 3970413 3972983 R KEGG: dde:Dde_1424 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase complement(3970413..3972983) Desulfovibrio vulgaris str. 'Miyazaki F' 7175093 YP_002437552.1 CDS DvMF_3148 NC_011769.1 3973132 3973641 D TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: dde:Dde_1425 deoxyuridine 5'-triphosphate nucleotidohydrolase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 3973132..3973641 Desulfovibrio vulgaris str. 'Miyazaki F' 7175094 YP_002437553.1 CDS DvMF_3149 NC_011769.1 3973734 3974942 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 3973734..3974942 Desulfovibrio vulgaris str. 'Miyazaki F' 7175095 YP_002437554.1 CDS DvMF_3150 NC_011769.1 3975206 3975556 D KEGG: dde:Dde_1427 hypothetical protein; hypothetical protein 3975206..3975556 Desulfovibrio vulgaris str. 'Miyazaki F' 7175096 YP_002437555.1 CDS DvMF_3151 NC_011769.1 3976116 3976844 D PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dde:Dde_1428 ATPase; ABC transporter 3976116..3976844 Desulfovibrio vulgaris str. 'Miyazaki F' 7175097 YP_002437556.1 CDS DvMF_3152 NC_011769.1 3977022 3977837 D PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1429 extracellular solute-binding protein; family 3 extracellular solute-binding protein 3977022..3977837 Desulfovibrio vulgaris str. 'Miyazaki F' 7175098 YP_002437557.1 CDS DvMF_3153 NC_011769.1 3977905 3978606 D TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_1430 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 3977905..3978606 Desulfovibrio vulgaris str. 'Miyazaki F' 7175099 YP_002437558.1 CDS DvMF_3154 NC_011769.1 3978723 3979412 D TIGRFAM: polar amino acid ABC transporter inner membrane protein; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dde:Dde_1431 amino acid ABC transporter permease; polar amino acid ABC transporter inner membrane protein 3978723..3979412 Desulfovibrio vulgaris str. 'Miyazaki F' 7175100 YP_002437559.1 CDS DvMF_3155 NC_011769.1 3979417 3980277 D PFAM: ribosomal L11 methyltransferase; KEGG: dde:Dde_1432 50S ribosomal protein L11P methyltransferase; ribosomal L11 methyltransferase 3979417..3980277 Desulfovibrio vulgaris str. 'Miyazaki F' 7175101 YP_002437560.1 CDS DvMF_3156 NC_011769.1 3980666 3981337 D PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: dde:Dde_1435 DNA-3-methyladenine glycosylase III; HhH-GPD family protein 3980666..3981337 Desulfovibrio vulgaris str. 'Miyazaki F' 7175102 YP_002437561.1 CDS DvMF_3157 NC_011769.1 3981341 3982717 D PFAM: peptidase M23; KEGG: dde:Dde_1436 M24/M37 family peptidase; peptidase M23 3981341..3982717 Desulfovibrio vulgaris str. 'Miyazaki F' 7175103 YP_002437562.1 CDS DvMF_3158 NC_011769.1 3982747 3984048 D KEGG: dde:Dde_1437 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 3982747..3984048 Desulfovibrio vulgaris str. 'Miyazaki F' 7175104 YP_002437563.1 CDS DvMF_3159 NC_011769.1 3984270 3985901 D PFAM: protein of unknown function DUF610 YibQ; KEGG: dde:Dde_1438 hypothetical protein; hypothetical protein 3984270..3985901 Desulfovibrio vulgaris str. 'Miyazaki F' 7175105 YP_002437564.1 CDS ndk NC_011769.1 3986241 3986660 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 3986241..3986660 Desulfovibrio vulgaris str. 'Miyazaki F' 7175106 YP_002437565.1 CDS DvMF_3161 NC_011769.1 3986665 3987474 D KEGG: dde:Dde_1440 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; pyrroline-5-carboxylate reductase 3986665..3987474 Desulfovibrio vulgaris str. 'Miyazaki F' 7175107 YP_002437566.1 CDS DvMF_3162 NC_011769.1 3987613 3988965 R PFAM: Smr protein/MutS2; KEGG: dde:Dde_1441 Smr protein/MutS2-like; Smr protein/MutS2 complement(3987613..3988965) Desulfovibrio vulgaris str. 'Miyazaki F' 7175108 YP_002437567.1 CDS DvMF_3163 NC_011769.1 3989316 3990323 D TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: dde:Dde_1442 signal peptide peptidase A; signal peptide peptidase SppA, 36K type 3989316..3990323 Desulfovibrio vulgaris str. 'Miyazaki F' 7175109 YP_002437568.1 CDS DvMF_3164 NC_011769.1 3990563 3991516 R PFAM: cobyrinic acid ac-diamide synthase; KEGG: dde:Dde_1306 hypothetical protein; cobyrinic acid ac-diamide synthase complement(3990563..3991516) Desulfovibrio vulgaris str. 'Miyazaki F' 7175110 YP_002437569.1 CDS DvMF_3165 NC_011769.1 3991789 3992445 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dde:Dde_1307 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB complement(3991789..3992445) Desulfovibrio vulgaris str. 'Miyazaki F' 7175111 YP_002437570.1 CDS DvMF_3166 NC_011769.1 3992456 3992800 R PFAM: hydrogenase expression/synthesis HypA; KEGG: dde:Dde_1308 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA complement(3992456..3992800) Desulfovibrio vulgaris str. 'Miyazaki F' 7175112 YP_002437571.1 CDS DvMF_3167 NC_011769.1 3993259 3994143 D PFAM: hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: dde:Dde_1309 TPR domain-containing protein; hypothetical protein 3993259..3994143 Desulfovibrio vulgaris str. 'Miyazaki F' 7175113 YP_002437572.1 CDS DvMF_3168 NC_011769.1 3994159 3995073 D KEGG: dde:Dde_1310 hypothetical protein; hypothetical protein 3994159..3995073 Desulfovibrio vulgaris str. 'Miyazaki F' 7175114 YP_002437573.1 CDS DvMF_3169 NC_011769.1 3995369 3995566 R PFAM: Heavy metal transport/detoxification protein; KEGG: dde:Dde_1312 mercuric transporter periplasmic component; heavy metal transport/detoxification protein complement(3995369..3995566) Desulfovibrio vulgaris str. 'Miyazaki F' 7175115 YP_002437574.1 CDS DvMF_3170 NC_011769.1 3995779 3998589 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; ATPase P; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dde:Dde_1313 heavy metal translocating P-type ATPase; ATPase P 3995779..3998589 Desulfovibrio vulgaris str. 'Miyazaki F' 7175116 YP_002437575.1 CDS DvMF_3171 NC_011769.1 3998793 3999215 R KEGG: dde:Dde_1314 hypothetical protein; hypothetical protein complement(3998793..3999215) Desulfovibrio vulgaris str. 'Miyazaki F' 7175117 YP_002437576.1 CDS DvMF_3172 NC_011769.1 3999603 4001006 R PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: dde:Dde_1315 UTP--glucose-1-phosphate uridylyltransferase; UTP--glucose-1-phosphate uridylyltransferase complement(3999603..4001006) Desulfovibrio vulgaris str. 'Miyazaki F' 7175118 YP_002437577.1 CDS DvMF_3173 NC_011769.1 4001377 4003251 R PFAM: carboxylyase-related protein; KEGG: dde:Dde_1323 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein; carboxylyase-related protein complement(4001377..4003251) Desulfovibrio vulgaris str. 'Miyazaki F' 7175119 YP_002437578.1 CDS DvMF_3174 NC_011769.1 4003669 4004508 R PFAM: transcriptional regulator; KEGG: mca:MCA2330 DNA-binding response regulator; two component transcriptional regulator, winged helix family complement(4003669..4004508) Desulfovibrio vulgaris str. 'Miyazaki F' 7175120 YP_002437579.1 CDS DvMF_3175 NC_011769.1 4004729 4005223 R PFAM: rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_1320 rubrerythrin; rubrerythrin complement(4004729..4005223) Desulfovibrio vulgaris str. 'Miyazaki F' 7175121 YP_002437580.1 CDS DvMF_3176 NC_011769.1 4005518 4008139 R KEGG: dde:Dde_1318 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase III complement(4005518..4008139) Desulfovibrio vulgaris str. 'Miyazaki F' 7175122 YP_002437581.1 CDS DvMF_3177 NC_011769.1 4008335 4009159 D PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: dde:Dde_1317 hypothetical protein; hypothetical protein 4008335..4009159 Desulfovibrio vulgaris str. 'Miyazaki F' 7175123 YP_002437582.1 CDS DvMF_3178 NC_011769.1 4009263 4010000 R TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: dde:Dde_1324 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(4009263..4010000) Desulfovibrio vulgaris str. 'Miyazaki F' 7175124 YP_002437583.1 CDS DvMF_3179 NC_011769.1 4010294 4010773 R PFAM: OsmC family protein; KEGG: cte:CT0949 hypothetical protein; OsmC family protein complement(4010294..4010773) Desulfovibrio vulgaris str. 'Miyazaki F' 7175125 YP_002437584.1 CDS DvMF_3180 NC_011769.1 4010942 4011688 R PFAM: beta-lactamase; KEGG: dde:Dde_1331 metallo-beta-lactamase family protein; beta-lactamase complement(4010942..4011688) Desulfovibrio vulgaris str. 'Miyazaki F' 7175126 YP_002437585.1 CDS DvMF_3181 NC_011769.1 4012023 4014119 R PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dde:Dde_3020 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(4012023..4014119) Desulfovibrio vulgaris str. 'Miyazaki F' 7175127 YP_002437586.1 CDS DvMF_3182 NC_011769.1 4014527 4015042 D PFAM: conserved hypothetical protein; KEGG: cts:Ctha_1725 hypothetical protein; hypothetical protein 4014527..4015042 Desulfovibrio vulgaris str. 'Miyazaki F' 7175128 YP_002437587.1 CDS DvMF_3183 NC_011769.1 4015320 4015544 D TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: dde:Dde_2519 TraR/DksA family transcriptional regulator; TraR/DksA family transcriptional regulator 4015320..4015544 Desulfovibrio vulgaris str. 'Miyazaki F' 7175129 YP_002437588.1 CDS DvMF_3184 NC_011769.1 4015847 4016251 D PFAM: cupin; KEGG: mes:Meso_2098 transcriptional regulator; cupin 4015847..4016251 Desulfovibrio vulgaris str. 'Miyazaki F' 7175130 YP_002437589.1 CDS DvMF_3185 NC_011769.1 4016345 4017355 R PFAM: phosphate transporter; KEGG: lip:LI0811 phosphate/sulfate permeases; phosphate transporter complement(4016345..4017355) Desulfovibrio vulgaris str. 'Miyazaki F' 7175131 YP_002437590.1 CDS DvMF_3186 NC_011769.1 4017348 4017977 R PFAM: protein of unknown function DUF47; KEGG: sfu:Sfum_2274 protein of unknown function DUF47; hypothetical protein complement(4017348..4017977) Desulfovibrio vulgaris str. 'Miyazaki F' 7175132 YP_002437591.1 CDS DvMF_3187 NC_011769.1 4018511 4019044 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rru:Rru_A1426 4Fe-4S ferredoxin iron-sulfur binding; 4Fe-4S ferredoxin complement(4018511..4019044) Desulfovibrio vulgaris str. 'Miyazaki F' 7175133 YP_002437592.1 CDS DvMF_3188 NC_011769.1 4019049 4019435 R TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: gbm:Gbem_0070 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA complement(4019049..4019435) Desulfovibrio vulgaris str. 'Miyazaki F' 7175134 YP_002437593.1 CDS DvMF_3189 NC_011769.1 4019464 4020597 R PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: chy:CHY_1827 carbon monoxide-induced hydrogenase, large subunit; NADH dehydrogenase (quinone) complement(4019464..4020597) Desulfovibrio vulgaris str. 'Miyazaki F' 7175135 YP_002437594.1 CDS DvMF_3190 NC_011769.1 4020594 4021241 R PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: chy:CHY_1828 carbon monoxide-induced hydrogenase, CooU subunit; NADH dehydrogenase (ubiquinone) 30 kDa subunit complement(4020594..4021241) Desulfovibrio vulgaris str. 'Miyazaki F' 7175136 YP_002437595.1 CDS DvMF_3191 NC_011769.1 4021210 4021899 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_1829 carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit; 4Fe-4S ferredoxin complement(4021210..4021899) Desulfovibrio vulgaris str. 'Miyazaki F' 7175137 YP_002437596.1 CDS DvMF_3192 NC_011769.1 4021903 4022343 R PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rru:Rru_A1422 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit complement(4021903..4022343) Desulfovibrio vulgaris str. 'Miyazaki F' 7175138 YP_002437597.1 CDS DvMF_3193 NC_011769.1 4022360 4023358 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: chy:CHY_1831 carbon monoxide-induced hydrogenase, CooK subunit; respiratory-chain NADH dehydrogenase subunit 1 complement(4022360..4023358) Desulfovibrio vulgaris str. 'Miyazaki F' 7175139 YP_002437598.1 CDS DvMF_3194 NC_011769.1 4023362 4027156 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: chy:CHY_1832 carbon monoxide-induced hydrogenase, membrane anchor subunit; NADH dehydrogenase (quinone) complement(4023362..4027156) Desulfovibrio vulgaris str. 'Miyazaki F' 7175140 YP_002437599.1 CDS DvMF_3195 NC_011769.1 4027722 4028090 R PFAM: small multidrug resistance protein; KEGG: nha:Nham_1679 small multidrug resistance protein; small multidrug resistance protein complement(4027722..4028090) Desulfovibrio vulgaris str. 'Miyazaki F' 7175141 YP_002437600.1 CDS DvMF_3196 NC_011769.1 4028328 4029296 D KEGG: dde:Dde_3620 amino acid ABC transporter periplasmic protein; hypothetical protein 4028328..4029296 Desulfovibrio vulgaris str. 'Miyazaki F' 7175142 YP_002437601.1 CDS DvMF_3197 NC_011769.1 4029345 4029689 D PFAM: Domain of unknown function DUF1791; KEGG: dde:Dde_2602 hypothetical protein; hypothetical protein 4029345..4029689 Desulfovibrio vulgaris str. 'Miyazaki F' 7175143 YP_002437602.1 CDS DvMF_3198 NC_011769.1 4029816 4030352 D KEGG: dde:Dde_2445 hypothetical protein; hypothetical protein 4029816..4030352 Desulfovibrio vulgaris str. 'Miyazaki F' 7175144 YP_002437603.1 CDS DvMF_3199 NC_011769.1 4030654 4032516 R KEGG: dde:Dde_2327 hypothetical protein; hypothetical protein complement(4030654..4032516) Desulfovibrio vulgaris str. 'Miyazaki F' 7175146 YP_002437604.1 CDS DvMF_3200 NC_011769.1 4032571 4033176 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dde:Dde_2326 ribosomal RNA large subunit methyltransferase J; ribosomal RNA methyltransferase RrmJ/FtsJ 4032571..4033176 Desulfovibrio vulgaris str. 'Miyazaki F' 7175147 YP_002437605.1 CDS DvMF_3201 NC_011769.1 4033283 4034026 D PFAM: protein of unknown function DUF28; KEGG: dde:Dde_2325 hypothetical protein; hypothetical protein 4033283..4034026 Desulfovibrio vulgaris str. 'Miyazaki F' 7175148 YP_002437606.1 CDS ruvC NC_011769.1 4034295 4034888 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 4034295..4034888 Desulfovibrio vulgaris str. 'Miyazaki F' 7175149 YP_002437607.1 CDS DvMF_3203 NC_011769.1 4035220 4036929 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb3563 C4-dicarboxylate transport sensor protein DctB; diguanylate cyclase complement(4035220..4036929) Desulfovibrio vulgaris str. 'Miyazaki F' 7175150 YP_002437608.1 CDS ruvA NC_011769.1 4037171 4037779 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 4037171..4037779 Desulfovibrio vulgaris str. 'Miyazaki F' 7175151 YP_002437609.1 CDS ruvB NC_011769.1 4037779 4038783 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 4037779..4038783 Desulfovibrio vulgaris str. 'Miyazaki F' 7175152 YP_002437610.1 CDS thyX NC_011769.1 4039006 4039737 D flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 4039006..4039737 Desulfovibrio vulgaris str. 'Miyazaki F' 7175153 DvMF_R0001 tRNA DvMF_R0001 NC_011769.1 8646 8720 R tRNA-Gly complement(8646..8720) Desulfovibrio vulgaris str. 'Miyazaki F' 7171874 DvMF_R0002 tRNA DvMF_R0002 NC_011769.1 9516 9590 R tRNA-Gly complement(9516..9590) Desulfovibrio vulgaris str. 'Miyazaki F' 7171876 DvMF_R0003 tRNA DvMF_R0003 NC_011769.1 9648 9722 R tRNA-Gly complement(9648..9722) Desulfovibrio vulgaris str. 'Miyazaki F' 7171877 DvMF_R0004 tRNA DvMF_R0004 NC_011769.1 9731 9805 R tRNA-Cys complement(9731..9805) Desulfovibrio vulgaris str. 'Miyazaki F' 7171878 DvMF_R0005 tRNA DvMF_R0005 NC_011769.1 9819 9893 R tRNA-Gly complement(9819..9893) Desulfovibrio vulgaris str. 'Miyazaki F' 7171879 DvMF_R0006 tRNA DvMF_R0006 NC_011769.1 56999 57074 R tRNA-Thr complement(56999..57074) Desulfovibrio vulgaris str. 'Miyazaki F' 7171915 DvMF_R0007 tRNA DvMF_R0007 NC_011769.1 71382 71471 R tRNA-Sec complement(71382..71471) Desulfovibrio vulgaris str. 'Miyazaki F' 7171928 DvMF_R0008 tRNA DvMF_R0008 NC_011769.1 117640 117724 D tRNA-Leu 117640..117724 Desulfovibrio vulgaris str. 'Miyazaki F' 7171983 DvMF_R0009 tRNA DvMF_R0009 NC_011769.1 185121 185214 R tRNA-Ser complement(185121..185214) Desulfovibrio vulgaris str. 'Miyazaki F' 7172044 DvMF_R0010 tRNA DvMF_R0010 NC_011769.1 197960 198036 R tRNA-Arg complement(197960..198036) Desulfovibrio vulgaris str. 'Miyazaki F' 7172057 DvMF_R0011 tRNA DvMF_R0011 NC_011769.1 198114 198190 R tRNA-Arg complement(198114..198190) Desulfovibrio vulgaris str. 'Miyazaki F' 7172058 DvMF_R0012 tRNA DvMF_R0012 NC_011769.1 198252 198328 R tRNA-Arg complement(198252..198328) Desulfovibrio vulgaris str. 'Miyazaki F' 7172059 DvMF_R0013 tRNA DvMF_R0013 NC_011769.1 213768 213844 D tRNA-Pro 213768..213844 Desulfovibrio vulgaris str. 'Miyazaki F' 7172074 DvMF_R0015 tRNA DvMF_R0015 NC_011769.1 297588 297663 R tRNA-Met complement(297588..297663) Desulfovibrio vulgaris str. 'Miyazaki F' 7172141 DvMF_R0016 tRNA DvMF_R0016 NC_011769.1 390152 390228 D tRNA-Arg 390152..390228 Desulfovibrio vulgaris str. 'Miyazaki F' 7172216 DvMF_R0017 tRNA DvMF_R0017 NC_011769.1 407901 407987 D tRNA-Leu 407901..407987 Desulfovibrio vulgaris str. 'Miyazaki F' 7172233 DvMF_R0018 tRNA DvMF_R0018 NC_011769.1 445427 445503 D tRNA-Met 445427..445503 Desulfovibrio vulgaris str. 'Miyazaki F' 7172263 DvMF_R0020 tRNA DvMF_R0020 NC_011769.1 571329 571404 D tRNA-Gln 571329..571404 Desulfovibrio vulgaris str. 'Miyazaki F' 7172373 DvMF_R0021 tRNA DvMF_R0021 NC_011769.1 901420 901496 R tRNA-Met complement(901420..901496) Desulfovibrio vulgaris str. 'Miyazaki F' 7172643 DvMF_R0022 tRNA DvMF_R0022 NC_011769.1 937777 937854 D tRNA-Pro 937777..937854 Desulfovibrio vulgaris str. 'Miyazaki F' 7172669 DvMF_R0025 tRNA DvMF_R0025 NC_011769.1 1107882 1107957 R tRNA-Ala complement(1107882..1107957) Desulfovibrio vulgaris str. 'Miyazaki F' 7172809 DvMF_R0026 tRNA DvMF_R0026 NC_011769.1 1107991 1108067 R tRNA-Ile complement(1107991..1108067) Desulfovibrio vulgaris str. 'Miyazaki F' 7172810 DvMF_R0028 tRNA DvMF_R0028 NC_011769.1 1194061 1194135 R tRNA-Val complement(1194061..1194135) Desulfovibrio vulgaris str. 'Miyazaki F' 7172879 DvMF_R0029 tRNA DvMF_R0029 NC_011769.1 1239707 1239793 D tRNA-Leu 1239707..1239793 Desulfovibrio vulgaris str. 'Miyazaki F' 7172918 DvMF_R0032 tRNA DvMF_R0032 NC_011769.1 1281431 1281506 R tRNA-Ala complement(1281431..1281506) Desulfovibrio vulgaris str. 'Miyazaki F' 7172949 DvMF_R0033 tRNA DvMF_R0033 NC_011769.1 1281540 1281616 R tRNA-Ile complement(1281540..1281616) Desulfovibrio vulgaris str. 'Miyazaki F' 7172950 DvMF_R0035 tRNA DvMF_R0035 NC_011769.1 1412828 1412914 R tRNA-Leu complement(1412828..1412914) Desulfovibrio vulgaris str. 'Miyazaki F' 7173053 DvMF_R0037 tRNA DvMF_R0037 NC_011769.1 1598601 1598677 R tRNA-Arg complement(1598601..1598677) Desulfovibrio vulgaris str. 'Miyazaki F' 7173213 DvMF_R0038 tRNA DvMF_R0038 NC_011769.1 1769809 1769884 D tRNA-Thr 1769809..1769884 Desulfovibrio vulgaris str. 'Miyazaki F' 7173351 DvMF_R0039 tRNA DvMF_R0039 NC_011769.1 1769889 1769974 D tRNA-Tyr 1769889..1769974 Desulfovibrio vulgaris str. 'Miyazaki F' 7173352 DvMF_R0040 tRNA DvMF_R0040 NC_011769.1 1770060 1770136 D tRNA-Gly 1770060..1770136 Desulfovibrio vulgaris str. 'Miyazaki F' 7173353 DvMF_R0041 tRNA DvMF_R0041 NC_011769.1 1770170 1770245 D tRNA-Thr 1770170..1770245 Desulfovibrio vulgaris str. 'Miyazaki F' 7173354 DvMF_R0042 tRNA DvMF_R0042 NC_011769.1 1771660 1771736 D tRNA-Trp 1771660..1771736 Desulfovibrio vulgaris str. 'Miyazaki F' 7173357 DvMF_R0043 tRNA DvMF_R0043 NC_011769.1 1825031 1825105 D tRNA-Gln 1825031..1825105 Desulfovibrio vulgaris str. 'Miyazaki F' 7173397 DvMF_R0044 tRNA DvMF_R0044 NC_011769.1 1825112 1825188 D tRNA-Glu 1825112..1825188 Desulfovibrio vulgaris str. 'Miyazaki F' 7173398 DvMF_R0045 tRNA DvMF_R0045 NC_011769.1 1946212 1946288 R tRNA-Asp complement(1946212..1946288) Desulfovibrio vulgaris str. 'Miyazaki F' 7173489 DvMF_R0046 tRNA DvMF_R0046 NC_011769.1 1946388 1946464 R tRNA-Asp complement(1946388..1946464) Desulfovibrio vulgaris str. 'Miyazaki F' 7173490 DvMF_R0047 tRNA DvMF_R0047 NC_011769.1 1946471 1946546 R tRNA-Val complement(1946471..1946546) Desulfovibrio vulgaris str. 'Miyazaki F' 7173491 DvMF_R0048 tRNA DvMF_R0048 NC_011769.1 2055521 2055596 R tRNA-Val complement(2055521..2055596) Desulfovibrio vulgaris str. 'Miyazaki F' 7173602 DvMF_R0049 tRNA DvMF_R0049 NC_011769.1 2159345 2159431 D tRNA-Leu 2159345..2159431 Desulfovibrio vulgaris str. 'Miyazaki F' 7173678 DvMF_R0050 tRNA DvMF_R0050 NC_011769.1 2298848 2298924 D tRNA-Pro 2298848..2298924 Desulfovibrio vulgaris str. 'Miyazaki F' 7173788 DvMF_R0051 tRNA DvMF_R0051 NC_011769.1 2320669 2320744 D tRNA-Thr 2320669..2320744 Desulfovibrio vulgaris str. 'Miyazaki F' 7173801 DvMF_R0052 tRNA DvMF_R0052 NC_011769.1 2436311 2436397 D tRNA-Leu 2436311..2436397 Desulfovibrio vulgaris str. 'Miyazaki F' 7173889 DvMF_R0053 tRNA DvMF_R0053 NC_011769.1 2600880 2600955 D tRNA-Ala 2600880..2600955 Desulfovibrio vulgaris str. 'Miyazaki F' 7174008 DvMF_R0054 tRNA DvMF_R0054 NC_011769.1 2648707 2648783 D tRNA-Arg 2648707..2648783 Desulfovibrio vulgaris str. 'Miyazaki F' 7174049 DvMF_R0055 tRNA DvMF_R0055 NC_011769.1 2652879 2652954 R tRNA-Ala complement(2652879..2652954) Desulfovibrio vulgaris str. 'Miyazaki F' 7174052 DvMF_R0057 tRNA DvMF_R0057 NC_011769.1 2775013 2775089 D tRNA-Ile 2775013..2775089 Desulfovibrio vulgaris str. 'Miyazaki F' 7174142 DvMF_R0058 tRNA DvMF_R0058 NC_011769.1 2775123 2775198 D tRNA-Ala 2775123..2775198 Desulfovibrio vulgaris str. 'Miyazaki F' 7174143 DvMF_R0061 tRNA DvMF_R0061 NC_011769.1 2785033 2785108 R tRNA-Lys complement(2785033..2785108) Desulfovibrio vulgaris str. 'Miyazaki F' 7174151 DvMF_R0063 tRNA DvMF_R0063 NC_011769.1 2808371 2808447 D tRNA-Ile 2808371..2808447 Desulfovibrio vulgaris str. 'Miyazaki F' 7174169 DvMF_R0064 tRNA DvMF_R0064 NC_011769.1 2808481 2808556 D tRNA-Ala 2808481..2808556 Desulfovibrio vulgaris str. 'Miyazaki F' 7174170 DvMF_R0067 tRNA DvMF_R0067 NC_011769.1 2919079 2919155 D tRNA-Met 2919079..2919155 Desulfovibrio vulgaris str. 'Miyazaki F' 7174253 DvMF_R0068 tRNA DvMF_R0068 NC_011769.1 3076794 3076869 R tRNA-Phe complement(3076794..3076869) Desulfovibrio vulgaris str. 'Miyazaki F' 7174377 DvMF_R0069 tRNA DvMF_R0069 NC_011769.1 3089813 3089888 D tRNA-His 3089813..3089888 Desulfovibrio vulgaris str. 'Miyazaki F' 7174387 DvMF_R0070 tRNA DvMF_R0070 NC_011769.1 3238054 3238130 R tRNA-Glu complement(3238054..3238130) Desulfovibrio vulgaris str. 'Miyazaki F' 7174499 DvMF_R0071 tRNA DvMF_R0071 NC_011769.1 3333078 3333154 D tRNA-Glu 3333078..3333154 Desulfovibrio vulgaris str. 'Miyazaki F' 7174574 DvMF_R0072 tRNA DvMF_R0072 NC_011769.1 3408688 3408779 D tRNA-Ser 3408688..3408779 Desulfovibrio vulgaris str. 'Miyazaki F' 7174632 DvMF_R0073 tRNA DvMF_R0073 NC_011769.1 3562548 3562639 D tRNA-Ser 3562548..3562639 Desulfovibrio vulgaris str. 'Miyazaki F' 7174756 DvMF_R0075 tRNA DvMF_R0075 NC_011769.1 3624895 3624987 R tRNA-Ser complement(3624895..3624987) Desulfovibrio vulgaris str. 'Miyazaki F' 7174813 DvMF_R0076 tRNA DvMF_R0076 NC_011769.1 3769135 3769210 R tRNA-Asn complement(3769135..3769210) Desulfovibrio vulgaris str. 'Miyazaki F' 7174931 DvMF_R0077 tRNA DvMF_R0077 NC_011769.1 3776502 3776577 R tRNA-Asn complement(3776502..3776577) Desulfovibrio vulgaris str. 'Miyazaki F' 7174936 DvMF_R0078 tRNA DvMF_R0078 NC_011769.1 3832145 3832220 R tRNA-Lys complement(3832145..3832220) Desulfovibrio vulgaris str. 'Miyazaki F' 7174980 DvMF_R0079 tRNA DvMF_R0079 NC_011769.1 3845418 3845504 R tRNA-Leu complement(3845418..3845504) Desulfovibrio vulgaris str. 'Miyazaki F' 7174993 DvMF_R0080 tRNA DvMF_R0080 NC_011769.1 4030433 4030508 R tRNA-Ala complement(4030433..4030508) Desulfovibrio vulgaris str. 'Miyazaki F' 7175145 DvMF_R0023 rRNA DvMF_R0023 NC_011769.1 1104568 1104682 R 5S ribosomal RNA complement(1104568..1104682) Desulfovibrio vulgaris str. 'Miyazaki F' 7172807 DvMF_R0024 rRNA DvMF_R0024 NC_011769.1 1104788 1107713 R 23S ribosomal RNA complement(1104788..1107713) Desulfovibrio vulgaris str. 'Miyazaki F' 7172808 DvMF_R0027 rRNA DvMF_R0027 NC_011769.1 1108180 1109715 R 16S ribosomal RNA complement(1108180..1109715) Desulfovibrio vulgaris str. 'Miyazaki F' 7172811 DvMF_R0030 rRNA DvMF_R0030 NC_011769.1 1278117 1278231 R 5S ribosomal RNA complement(1278117..1278231) Desulfovibrio vulgaris str. 'Miyazaki F' 7172947 DvMF_R0031 rRNA DvMF_R0031 NC_011769.1 1278337 1281262 R 23S ribosomal RNA complement(1278337..1281262) Desulfovibrio vulgaris str. 'Miyazaki F' 7172948 DvMF_R0034 rRNA DvMF_R0034 NC_011769.1 1281729 1283264 R 16S ribosomal RNA complement(1281729..1283264) Desulfovibrio vulgaris str. 'Miyazaki F' 7172951 DvMF_R0056 rRNA DvMF_R0056 NC_011769.1 2773365 2774900 D 16S ribosomal RNA 2773365..2774900 Desulfovibrio vulgaris str. 'Miyazaki F' 7174141 DvMF_R0059 rRNA DvMF_R0059 NC_011769.1 2775367 2778292 D 23S ribosomal RNA 2775367..2778292 Desulfovibrio vulgaris str. 'Miyazaki F' 7174144 DvMF_R0060 rRNA DvMF_R0060 NC_011769.1 2778398 2778512 D 5S ribosomal RNA 2778398..2778512 Desulfovibrio vulgaris str. 'Miyazaki F' 7174145 DvMF_R0062 rRNA DvMF_R0062 NC_011769.1 2806723 2808258 D 16S ribosomal RNA 2806723..2808258 Desulfovibrio vulgaris str. 'Miyazaki F' 7174168 DvMF_R0065 rRNA DvMF_R0065 NC_011769.1 2808725 2811650 D 23S ribosomal RNA 2808725..2811650 Desulfovibrio vulgaris str. 'Miyazaki F' 7174171 DvMF_R0066 rRNA DvMF_R0066 NC_011769.1 2811756 2811870 D 5S ribosomal RNA 2811756..2811870 Desulfovibrio vulgaris str. 'Miyazaki F' 7174172