-- dump date   	20111121_011825
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_004111316.1	TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: cbt:CLH_0001 chromosomal replication initiation protein; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase
YP_004111317.1	SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: sdn:Sden_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain
YP_004111318.1	KEGG: ilo:IL0003 recombinational DNA repair ATPase; TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein
YP_004111319.1	KEGG: rca:Rcas_1940 putative endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP
YP_004111320.1	KEGG: tye:THEYE_A0332 YjeF family protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain-containing protein; protein of unknown function UPF0031
YP_004111321.1	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: aby:ABAYE3654 MerR family transcriptional regulator; SMART: regulatory protein MerR
YP_004111322.1	PFAM: cation efflux protein; KEGG: maq:Maqu_4003 CDF family heavy metal/H(+) antiporter
YP_004111323.1	PFAM: Integrase catalytic region; KEGG: sjp:SJA_P2-00260 transposase of IS6100
YP_004111324.1	manually curated; KEGG: abn:AB57_0266 NTP-binding protein
YP_004111325.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cdi:DIP1949 putative acetyltransferase
YP_004111326.1	TIGRFAM: dihydropteroate synthase; KEGG: sat:SYN_02578 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS
YP_004111327.1	PFAM: small multidrug resistance protein; KEGG: asa:ASA_P4G099 quaternary ammonium compound-resistance protein QacEdelta1
YP_004111328.1	manually curated; KEGG: asa:ASA_P4G100 aminoglycoside resistance protein; PFAM: DNA polymerase beta domain protein region
YP_004111329.1	KEGG: aby:ABAYE3646 integrase/recombinase (E2 protein); TIGRFAM: integron integrase; PFAM: integrase family protein; integrase domain protein SAM domain protein
YP_004111330.1	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: abo:ABO_1367 MerR family transcriptional regulator; SMART: regulatory protein MerR
YP_004111331.1	PFAM: cation efflux protein; KEGG: maq:Maqu_4003 CDF family heavy metal/H(+) antiporter
YP_004111332.1	TIGRFAM: lipoprotein signal peptidase; KEGG: bxe:Bxe_C0884 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II
YP_004111333.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase TnpA
YP_004111334.1	PFAM: pyruvate carboxyltransferase; KEGG: lic:LIC10409 2-isopropylmalate synthase
YP_004111335.1	KEGG: dap:Dacet_2030 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_004111336.1	KEGG: dak:DaAHT2_2097 hypothetical protein
YP_004111337.1	KEGG: sfu:Sfum_2764 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_004111338.1	KEGG: gsu:GSU0599 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein
YP_004111339.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dak:DaAHT2_0405 phosphonate ABC transporter, periplasmic phosphonate-binding protein
YP_004111340.1	PFAM: protein of unknown function DUF34; KEGG: cth:Cthe_0892 hypothetical protein
YP_004111341.1	KEGG: dvl:Dvul_2450 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain
YP_004111342.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; KEGG: dap:Dacet_0747 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein
YP_004111343.1	PFAM: UspA domain-containing protein; KEGG: pca:Pcar_3020 putative universal stress protein Usp
YP_004111344.1	KEGG: pca:Pcar_3019 C4-dicarboxylate transport system, large permease subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004111345.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pca:Pcar_3018 C4-dicarboxylate transport system, small permease subunit
YP_004111346.1	PFAM: Extracellular solute-binding protein, family 7; KEGG: pca:Pcar_3017 C4-dicarboxylate transport system, periplasmic component
YP_004111347.1	KEGG: xau:Xaut_4905 hypothetical protein
YP_004111348.1	KEGG: hch:HCH_03018 outer membrane protein
YP_004111349.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dak:DaAHT2_2495 efflux transporter, RND family, MFP subunit
YP_004111350.1	KEGG: dak:DaAHT2_2494 heavy metal efflux pump, CzcA family; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein
YP_004111351.1	KEGG: dak:DaAHT2_2493 putative cation efflux system transmembrane protein
YP_004111352.1	KEGG: ssc:100048948 ADAM metallopeptidase domain 3A (cyritestin 1)
YP_004111353.1	KEGG: dtu:Dtur_1675 alpha amylase catalytic region
YP_004111354.1	KEGG: dak:DaAHT2_2493 putative cation efflux system transmembrane protein
YP_004111355.1	PFAM: regulatory protein MerR; KEGG: mgi:Mflv_3898 DNA binding domain-containing protein
YP_004111356.1	KEGG: tgr:Tgr7_2514 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase
YP_004111357.1	KEGG: lpp:lpp2342 hypothetical protein
YP_004111358.1	KEGG: mgi:Mflv_3898 DNA binding domain-containing protein
YP_004111359.1	KEGG: dat:HRM2_31470 hypothetical protein
YP_004111360.1	KEGG: gbm:Gbem_3567 hypothetical protein
YP_004111361.1	KEGG: gbm:Gbem_3565 hypothetical protein
YP_004111362.1	KEGG: pth:PTH_0046 hypothetical protein
YP_004111363.1	TIGRFAM: dihydrodipicolinate reductase; KEGG: dap:Dacet_2492 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase
YP_004111364.1	KEGG: tye:THEYE_A0933 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase
YP_004111365.1	KEGG: ddf:DEFDS_0214 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase
YP_004111366.1	KEGG: ddf:DEFDS_0213 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2
YP_004111367.1	KEGG: glo:Glov_3607 methylthioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine or other phosphorylase family 1
YP_004111368.1	KEGG: ddf:DEFDS_1474 glutamine synthetase type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp
YP_004111369.1	PFAM: nitrogen regulatory protein P-II; KEGG: cvi:CV_2045 nitrogen regulatory protein P-II-1
YP_004111370.1	KEGG: psa:PST_0127 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G
YP_004111371.1	TIGRFAM: general secretion pathway protein H; KEGG: psa:PST_0128 general secretion pathway protein H
YP_004111372.1	KEGG: pag:PLES_19611 general secretion pathway protein I; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J
YP_004111373.1	TIGRFAM: general secretion pathway protein J; KEGG: psa:PST_0130 general secretion pathway protein J
YP_004111374.1	KEGG: pmy:Pmen_2919 general secretion pathway protein K
YP_004111375.1	KEGG: gpb:HDN1F_34760 general secretion pathway protein L; TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L
YP_004111376.1	PFAM: General secretion pathway M protein; KEGG: maq:Maqu_1357 general secretion pathway M protein
YP_004111377.1	KEGG: pha:PSHAb0241 putative orphan protein
YP_004111378.1	KEGG: syf:Synpcc7942_1816 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; Cache type 2 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver
YP_004111379.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; response regulator receiver; KEGG: sat:SYN_01077 sensor proteinluxq; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver
YP_004111380.1	KEGG: wsu:WS1632 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat
YP_004111381.1	KEGG: dsa:Desal_3384 hemolysin-type calcium-binding region
YP_004111382.1	SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: gur:Gura_3308 diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein
YP_004111383.1	PFAM: protein of unknown function DUF721; KEGG: msv:Mesil_0055 protein of unknown function DUF721
YP_004111384.1	KEGG: gur:Gura_1168 FmdB family regulatory protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB
YP_004111385.1	PFAM: polysaccharide deacetylase; KEGG: ilo:IL0251 polysaccharide deacetylase family protein
YP_004111386.1	KEGG: aeh:Mlg_0986 response regulator receiver protein; PFAM: response regulator receiver; type IV pilus assembly PilZ; SMART: response regulator receiver
YP_004111387.1	KEGG: dap:Dacet_1501 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004111388.1	KEGG: asa:ASA_0330 DegQ serine protease
YP_004111389.1	KEGG: rlg:Rleg_5295 oxidoreductase domain protein
YP_004111390.1	KEGG: wsu:WS1402 hypothetical protein; manually curated; PFAM: NifQ family protein
YP_004111391.1	TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: tjr:TherJR_1277 RecA protein; SMART: AAA ATPase
YP_004111392.1	KEGG: ddf:DEFDS_0035 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like
YP_004111393.1	TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: sat:SYN_00640 replicative DNA helicase; SMART: AAA ATPase
YP_004111394.1	KEGG: aeh:Mlg_0309 choline/carnitine/betaine transporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter
YP_004111395.1	KEGG: pca:Pcar_1509 putative transport system permease protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein
YP_004111396.1	PFAM: UvrD/REP helicase; KEGG: gwc:GWCH70_0270 ATP-dependent DNA helicase PcrA
YP_004111397.1	KEGG: ssm:Spirs_2607 carbon storage regulator, CsrA; TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator
YP_004111398.1	PFAM: protein of unknown function DUF180; KEGG: tjr:TherJR_2795 protein of unknown function DUF180
YP_004111399.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azo:azo1058 hypothetical protein
YP_004111400.1	KEGG: drm:Dred_2547 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC
YP_004111401.1	TIGRFAM: rod shape-determining protein MreD; KEGG: dak:DaAHT2_1935 rod shape-determining protein MreD
YP_004111402.1	TIGRFAM: penicillin-binding protein 2; KEGG: gsu:GSU2079 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain
YP_004111403.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: gbm:Gbem_3561 NAD-dependent epimerase/dehydratase
YP_004111404.1	KEGG: gme:Gmet_0922 D-beta-D-heptose 1-phosphate adenylyltransferase/D-alpha,beta-D-heptose 7-phosphate 1-kinase; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase
YP_004111405.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ana:all0475 hypothetical protein
YP_004111406.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cbe:Cbei_0074 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region
YP_004111407.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; KEGG: wsu:WS1328 putative two-component sensor; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein
YP_004111408.1	KEGG: ant:Arnit_2887 putative ammonium transportertype; TIGRFAM: putative ammonium transporter, marine subtype; ammonium transporter; PFAM: ammonium transporter
YP_004111409.1	KEGG: ttu:TERTU_1521 Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase
YP_004111410.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; KEGG: dar:Daro_1782 molybdopterin-guanine dinucleotide biosynthesis MobB region
YP_004111411.1	KEGG: cpf:CPF_2340 molybdenum cofactor biosynthesis protein MoaC; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC
YP_004111412.1	TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; KEGG: tjr:TherJR_0759 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB
YP_004111413.1	KEGG: ddf:DEFDS_0827 molybdopterin biosynthesis protein MoeA; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV
YP_004111414.1	PFAM: molybdopterin binding domain; KEGG: dap:Dacet_1846 molybdopterin binding domain protein
YP_004111415.1	KEGG: nde:NIDE3351 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_004111416.1	TIGRFAM: transcriptional activator, Baf family; KEGG: gsu:GSU1934 pantothenate kinase; PFAM: Bvg accessory factor
YP_004111417.1	KEGG: cce:Ccel_0134 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase
YP_004111418.1	TIGRFAM: dihydroxy-acid dehydratase; KEGG: gem:GM21_1494 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase
YP_004111419.1	KEGG: ddf:DEFDS_1667 acetolactate synthase large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein
YP_004111420.1	KEGG: pca:Pcar_1909 acetolactate synthase 3 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein
YP_004111421.1	KEGG: tdn:Suden_0969 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004111422.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: sdl:Sdel_0894 ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_004111423.1	PFAM: LrgA family protein; KEGG: lhk:LHK_01815 LrgA
YP_004111424.1	PFAM: LrgB family protein; KEGG: aeh:Mlg_0424 LrgB family protein
YP_004111425.1	KEGG: pca:Pcar_1486 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region
YP_004111426.1	KEGG: cnb:CNBM0320 hypothetical protein
YP_004111427.1	KEGG: btb:BMB171_C4410 pyrophosphatase PpaX; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_004111428.1	KEGG: tte:TTE2610 PHP family histidinol phosphatase/hydrolase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein
YP_004111429.1	KEGG: dvm:DvMF_0050 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein
YP_004111430.1	KEGG: dvm:DvMF_0050 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein
YP_004111431.1	KEGG: ddf:DEFDS_1345 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH
YP_004111432.1	PFAM: L-lactate permease; KEGG: pmy:Pmen_0198 L-lactate permease
YP_004111433.1	PFAM: protein of unknown function DUF162; KEGG: ddf:DEFDS_1348 hypothetical protein
YP_004111434.1	PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ddf:DEFDS_1349 iron-sulfur cluster-binding protein
YP_004111435.1	KEGG: ddf:DEFDS_0797 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer
YP_004111436.1	KEGG: dsy:DSY2064 hypothetical protein; PFAM: FAD linked oxidase domain protein
YP_004111437.1	PFAM: glutamine amidotransferase class-II; KEGG: ava:Ava_4720 glutamine amidotransferase, class-II
YP_004111438.1	PFAM: Auxin Efflux Carrier; KEGG: cpb:Cphamn1_0469 auxin efflux carrier
YP_004111439.1	PFAM: peptidase U32; KEGG: syf:Synpcc7942_1622 proteinase
YP_004111440.1	KEGG: dth:DICTH_0757 heat shock protein HtpX
YP_004111441.1	KEGG: gur:Gura_4427 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A
YP_004111442.1	KEGG: seu:SEQ_1894 16S rRNA methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein
YP_004111443.1	KEGG: hac:Hac_0575 partition protein, ParA-like protein
YP_004111444.1	TIGRFAM: triosephosphate isomerase; KEGG: rrs:RoseRS_3813 triosephosphate isomerase; PFAM: triosephosphate isomerase
YP_004111445.1	KEGG: gur:Gura_2058 preprotein translocase subunit SecG; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit
YP_004111446.1	PFAM: Lytic transglycosylase catalytic; KEGG: tcx:Tcr_0080 lytic transglycosylase, catalytic
YP_004111447.1	KEGG: gem:GM21_1666 hemerythrin HHE cation binding domain protein
YP_004111448.1	PFAM: protein of unknown function UPF0047; KEGG: ddf:DEFDS_0856 hypothetical protein
YP_004111449.1	PFAM: ThiJ/PfpI domain-containing protein; KEGG: ddf:DEFDS_1436 sigma cross-reacting protein 27A
YP_004111450.1	PFAM: protein export chaperone SecB; KEGG: alv:Alvin_3029 protein-export protein SecB
YP_004111451.1	KEGG: ptr:466442 Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
YP_004111452.1	KEGG: hau:Haur_4852 multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; SMART: GAF domain protein
YP_004111453.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: gpb:HDN1F_30520 hypothetical protein
YP_004111454.1	KEGG: ddf:DEFDS_1392 hypothetical protein
YP_004111455.1	PFAM: protein of unknown function DUF152; KEGG: mxa:MXAN_2999 hypothetical protein
YP_004111456.1	PFAM: alanine racemase domain protein; KEGG: gsu:GSU2544 hypothetical protein
YP_004111457.1	TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: plm:Plim_2835 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent
YP_004111458.1	PFAM: protein of unknown function YGGT; KEGG: gur:Gura_1165 protein of unknown function YGGT
YP_004111459.1	KEGG: ttj:TTHA0564 cell division initiation protein DivIVA
YP_004111460.1	PFAM: protein of unknown function DUF167; KEGG: swo:Swol_0959 hypothetical protein
YP_004111461.1	TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: aca:ACP_0311 methylthioribose-1-phosphate isomerase; PFAM: initiation factor 2B related
YP_004111462.1	TIGRFAM: lactoylglutathione lyase; KEGG: ttu:TERTU_2980 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004111463.1	PFAM: protein of unknown function DUF1622; KEGG: tgr:Tgr7_2954 hypothetical protein
YP_004111464.1	KEGG: maq:Maqu_2837 hypothetical protein
YP_004111465.1	PFAM: Citrate transporter; TrkA-C domain protein; KEGG: pmy:Pmen_0475 citrate transporter
YP_004111466.1	KEGG: dap:Dacet_1498 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004111467.1	KEGG: nth:Nther_0659 hypothetical protein
YP_004111468.1	PFAM: peptidase M48 Ste24p; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dol:Dole_2972 peptidase M48 Ste24p
YP_004111469.1	PFAM: Ion transport protein; KEGG: bse:Bsel_2225 ion transport protein
YP_004111470.1	KEGG: wsu:WS0627 hypothetical protein
YP_004111471.1	KEGG: dde:Dde_2268 hypothetical protein
YP_004111472.1	KEGG: rca:Rcas_1937 rhodanese domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein
YP_004111473.1	KEGG: geo:Geob_3271 carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein
YP_004111474.1	KEGG: cju:C8J_0326 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain
YP_004111475.1	manually curated; TIGRFAM: addiction module killer protein; KEGG: ctt:CtCNB1_3006 putative transcriptional regulator; PFAM: protein of unknown function DUF891
YP_004111476.1	TIGRFAM: addiction module antidote protein; KEGG: eba:ebD15 putative regulator
YP_004111477.1	TIGRFAM: phosphomethylpyrimidine kinase; KEGG: gau:GAU_3709 thiamine-phosphate pyrophosphorylase/phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1
YP_004111478.1	PFAM: AAA-4 family protein; KEGG: dba:Dbac_0182 putative transcriptional regulator
YP_004111479.1	PFAM: NUDIX hydrolase; KEGG: gme:Gmet_1790 NUDIX hydrolase
YP_004111480.1	SMART: AAA ATPase; KEGG: gur:Gura_4144 AAA ATPase
YP_004111481.1	TIGRFAM: thiamine-monophosphate kinase; KEGG: dol:Dole_1765 thiamine-phosphate pyrophosphorylase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_004111482.1	KEGG: gca:Galf_0229 general secretion pathway protein H
YP_004111483.1	KEGG: vcj:VCD_003128 GGDEF family protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein
YP_004111484.1	KEGG: bcm:Bcenmc03_5978 PAS/PAC sensor hybrid histidine kinase
YP_004111485.1	TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; KEGG: pth:PTH_0906 DNA primase; SMART: Toprim sub domain-containing protein
YP_004111486.1	KEGG: ddf:DEFDS_1486 DNA-directed RNA polymerase sigma 70 factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 non-essential domain protein; sigma-70 region 4 domain protein
YP_004111487.1	PFAM: aminotransferase class V; KEGG: ddf:DEFDS_2124 serine--glyoxylate transaminase
YP_004111488.1	KEGG: tye:THEYE_A0937 D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein
YP_004111489.1	KEGG: gsu:GSU3307 ATP phosphoribosyltransferase regulatory subunit; PFAM: tRNA synthetase class II (G H P and S)
YP_004111490.1	SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: gsu:GSU3308 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase
YP_004111491.1	PFAM: DSBA oxidoreductase; KEGG: pla:Plav_3281 DsbA oxidoreductase
YP_004111492.1	PFAM: Protein of unknown function DUF2318, membrane; KEGG: dol:Dole_0915 membrane protein-like protein
YP_004111493.1	SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: tcx:Tcr_0503 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein
YP_004111494.1	TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: bpy:Bphyt_6258 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase
YP_004111495.1	manually curated; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; KEGG: bpr:GBP346_A3392 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA
YP_004111496.1	KEGG: nhl:Nhal_3806 hypothetical protein
YP_004111497.1	KEGG: gsu:GSU3077 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase
YP_004111498.1	KEGG: dma:DMR_21430 hypothetical protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein
YP_004111499.1	KEGG: hps:HPSH_00855 hypothetical protein
YP_004111500.1	PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: saf:SULAZ_1017 mannose-1-phosphate guanyltransferase
YP_004111501.1	KEGG: hau:Haur_1232 PKD domain-containing protein
YP_004111502.1	KEGG: vsa:VSAL_I0480 exported protein MshO
YP_004111503.1	KEGG: cja:CJA_2388 MSHA pilin protein MshD
YP_004111504.1	KEGG: xca:xccb100_4421 exported conserved hypothetical protein
YP_004111505.1	KEGG: sua:Saut_1576 N-terminal methylation
YP_004111506.1	PFAM: Type II secretion system F domain; KEGG: cps:CPS_4572 MSHA biogenesis protein MshG
YP_004111507.1	KEGG: hch:HCH_06149 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase
YP_004111508.1	KEGG: tpd:Teth39_1469 NLP/P60 protein; PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein
YP_004111509.1	PFAM: type II and III secretion system protein; KEGG: sua:Saut_0021 type II and III secretion system protein
YP_004111510.1	KEGG: drt:Dret_1993 hypothetical protein
YP_004111511.1	KEGG: pca:Pcar_0383 MshA biogenesis protein, MshJ-like
YP_004111512.1	KEGG: pca:Pcar_0382 MshA biogenesis protein MshI-2
YP_004111513.1	KEGG: cja:CJA_2401 putative MSHA biogenesis protein MshI
YP_004111514.1	PFAM: glycoside hydrolase family 57; KEGG: pca:Pcar_2957 alpha-mannosidase
YP_004111515.1	PFAM: UspA domain-containing protein; KEGG: pla:Plav_3480 UspA domain-containing protein
YP_004111516.1	KEGG: dde:Dde_3088 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35
YP_004111517.1	KEGG: scl:sce5394 glycerol-1-phosphate dehydrogenase (NAD(P)(+)); PFAM: 3-dehydroquinate synthase
YP_004111518.1	KEGG: cac:CA_C1625 phosphoserine phosphatase family protein
YP_004111519.1	KEGG: cps:CPS_4753 hypothetical protein
YP_004111520.1	TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; KEGG: gsu:GSU1798 putative alpha-isopropylmalate/homocitrate synthase family transferase; PFAM: LeuA allosteric (dimerisation) domain-containing protein; pyruvate carboxyltransferase
YP_004111521.1	TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: tdn:Suden_1734 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; mannose-6-phosphate isomerase type II
YP_004111522.1	PFAM: glycosyl transferase group 1; KEGG: ent:Ent638_2645 glycosyl transferase, group 1
YP_004111523.1	KEGG: dap:Dacet_2692 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004111524.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: xcb:XC_3626 Rossmann-fold NAD(P)(+)-binding proteins; region: NADB_Rossmann; cl09931
YP_004111525.1	KEGG: mgm:Mmc1_1858 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase
YP_004111526.1	KEGG: mfa:Mfla_1126 hypothetical protein
YP_004111527.1	KEGG: aeh:Mlg_1845 TonB family protein
YP_004111528.1	KEGG: bac:BamMC406_6069 LamG domain-containing protein; PFAM: Hemolysin-type calcium-binding region; SMART: LamG domain protein jellyroll fold domain protein
YP_004111529.1	KEGG: pat:Patl_3291 hypothetical protein
YP_004111530.1	PFAM: sugar transferase; KEGG: lbl:LBL_1221 undecaprenyl-galactosyl transferase
YP_004111531.1	KEGG: rce:RC1_0358 HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein
YP_004111532.1	TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; KEGG: rce:RC1_0357 proteases secretion ATP-binding protein PrtD; SMART: AAA ATPase
YP_004111533.1	KEGG: rsc:RCFBP_20719 type I secretion outer membrane protein, TolC; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein
YP_004111534.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: ppu:PP_1777 phosphomannomutase
YP_004111535.1	PFAM: ABC-2 type transporter; KEGG: ppu:PP_1778 lipopolysaccharide ABC export system, permease protein
YP_004111536.1	KEGG: ppu:PP_1779 lipopolysaccharide ABC export system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004111537.1	PFAM: Methyltransferase type 11; KEGG: mtp:Mthe_1074 methyltransferase type 11
YP_004111538.1	PFAM: glycosyl transferase group 1; KEGG: mtp:Mthe_1073 glycosyl transferase, group 1
YP_004111539.1	PFAM: glycosyl transferase family 2; KEGG: sno:Snov_3765 glycosyl transferase family 2
YP_004111540.1	KEGG: sno:Snov_3767 hypothetical protein
YP_004111541.1	KEGG: sno:Snov_3768 hypothetical protein
YP_004111542.1	KEGG: dak:DaAHT2_0477 fibronectin type III domain protein
YP_004111543.1	KEGG: amc:MADE_03097 putative Fimh-like protein
YP_004111544.1	PFAM: Hemolysin-type calcium-binding region; KEGG: cff:CFF8240_0486 surface array protein
YP_004111545.1	KEGG: tet:TTHERM_00819500 hypothetical protein
YP_004111546.1	PFAM: Methyltransferase regulatory domain, predicted; KEGG: rce:RC1_0828 hypothetical protein
YP_004111547.1	KEGG: bgl:bglu_1g26190 hypothetical protein
YP_004111548.1	KEGG: sit:TM1040_3853 hypothetical protein
YP_004111550.1	manually curated; KEGG: mgm:Mmc1_2781 hypothetical protein
YP_004111551.1	KEGG: mgm:Mmc1_2698 hypothetical protein
YP_004111552.1	KEGG: glo:Glov_0507 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase
YP_004111553.1	PFAM: protein of unknown function DUF86; KEGG: mrb:Mrub_1240 hypothetical protein
YP_004111554.1	PFAM: DNA polymerase beta domain protein region; KEGG: ant:Arnit_1236 DNA polymerase beta domain-containing protein region
YP_004111555.1	KEGG: nde:NIDE2457 chaperone protein ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; UvrB/UvrC protein; Clp ATPase-like; SMART: AAA ATPase
YP_004111556.1	TIGRFAM: quinolinate synthetase complex, A subunit; KEGG: glo:Glov_3586 quinolinate synthetase; PFAM: Quinolinate synthetase A
YP_004111557.1	PFAM: protein of unknown function DUF45; KEGG: det:DET0151 hypothetical protein
YP_004111558.1	KEGG: nam:NAMH_0533 hypothetical protein
YP_004111559.1	PFAM: Polynucleotide adenylyltransferase region; KEGG: ago:AGOS_AGR118W hypothetical protein
YP_004111560.1	KEGG: bsb:Bresu_2910 hypothetical protein
YP_004111561.1	KEGG: pjd:Pjdr2_4021 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase
YP_004111562.1	KEGG: vsp:VS_3123 hypothetical protein
YP_004111563.1	KEGG: sti:Sthe_0385 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein
YP_004111564.1	KEGG: sat:SYN_00533 tRNA nucleotidyltransferase; PFAM: Polynucleotide adenylyltransferase region; CBS domain containing protein; phosphoesterase RecJ domain protein; SMART: CBS domain containing protein
YP_004111565.1	TIGRFAM: histidinol phosphate phosphatase HisJ family; KEGG: cpe:CPE0804 sensory box protein/histidinol phosphate phosphatase family protein; PFAM: PHP domain protein
YP_004111566.1	KEGG: wsu:WS1499 putative ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN
YP_004111567.1	PFAM: Polyketide cyclase/dehydrase; KEGG: npu:Npun_R2076 activator of HSP90 ATPase 1 family protein
YP_004111568.1	KEGG: gur:Gura_3394 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004111569.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dvm:DvMF_1013 peptidylprolyl isomerase FKBP-type
YP_004111570.1	TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; KEGG: dap:Dacet_1043 ADP-ribosyl-(dinitrogen reductase) hydrolase; PFAM: ADP-ribosylation/Crystallin J1
YP_004111571.1	KEGG: dap:Dacet_1042 NAD(+)--dinitrogen-reductaseADP-D-ribosyltransfe rase; PFAM: Dinitrogenase reductase ADP-ribosyltransferase
YP_004111572.1	PFAM: NifZ family protein; KEGG: dap:Dacet_1041 NifZ family protein
YP_004111573.1	TIGRFAM: ferredoxin III, nif-specific; KEGG: dap:Dacet_1040 ferredoxin III, nif-specific
YP_004111574.1	TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; KEGG: dap:Dacet_1050 nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1
YP_004111575.1	TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; KEGG: dap:Dacet_1051 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase component 1
YP_004111576.1	KEGG: dap:Dacet_1052 nitrogen fixation protein NifX; TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein
YP_004111577.1	PFAM: DNA polymerase beta domain protein region; KEGG: tau:Tola_2057 DNA polymerase beta domain protein region
YP_004111578.1	KEGG: cli:Clim_0232 nucleotidyltransferase substrate binding protein, HI0074 family; TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074
YP_004111579.1	PFAM: small multidrug resistance protein; KEGG: gpb:HDN1F_05890 SugE protein
YP_004111580.1	PFAM: MscS Mechanosensitive ion channel; KEGG: kko:Kkor_0804 MscS mechanosensitive ion channel
YP_004111581.1	PFAM: protein of unknown function DUF269; KEGG: fal:FRAAL6807 hypothetical protein
YP_004111582.1	KEGG: dds:Ddes_2020 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein
YP_004111583.1	PFAM: UspA domain-containing protein; KEGG: hch:HCH_02511 universal stress protein UspA-like nucleotide-binding protein
YP_004111584.1	PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: abu:Abu_1286 sulfate permease
YP_004111585.1	PFAM: (Uracil-5)-methyltransferase; KEGG: dap:Dacet_0891 (uracil-5)-methyltransferase
YP_004111586.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: dsa:Desal_0547 cupin 2 conserved barrel domain protein
YP_004111587.1	TIGRFAM: ATP phosphoribosyltransferase; KEGG: gem:GM21_3801 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase catalytic region
YP_004111588.1	TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: tbd:Tbd_1891 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
YP_004111589.1	KEGG: tgr:Tgr7_2386 hypothetical protein
YP_004111590.1	KEGG: gur:Gura_4321 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase
YP_004111591.1	KEGG: pca:Pcar_1329 beta-lactamase superfamily hydrolase
YP_004111592.1	KEGG: ddf:DEFDS_1085 RNA-binding protein Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core
YP_004111593.1	PFAM: O-antigen polymerase; KEGG: csa:Csal_1694 O-antigen polymerase
YP_004111594.1	KEGG: rop:ROP_13710 putative LuxR family transcriptional regulator
YP_004111595.1	KEGG: cpc:Cpar_1808 hypothetical protein
YP_004111596.1	PFAM: PhoP regulatory network protein YrbL; KEGG: dap:Dacet_2166 PhoP regulatory network protein YrbL
YP_004111597.1	PFAM: glycosyl transferase family 2; KEGG: ttu:TERTU_0694 glycosyltransferase, group 2 family protein
YP_004111598.1	KEGG: sde:Sde_3742 hypothetical protein
YP_004111599.1	PFAM: glycosyl transferase group 1; KEGG: hha:Hhal_2363 glycosyl transferase, group 1
YP_004111600.1	PFAM: glycosyl transferase family 25; KEGG: vsp:VS_II1220 glycosyltransferase
YP_004111601.1	PFAM: NADPH-dependent FMN reductase; KEGG: mbn:Mboo_0650 NADPH-dependent FMN reductase
YP_004111602.1	KEGG: gsu:GSU3303 methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004111603.1	KEGG: pmx:PERMA_0986 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; histidine kinase HAMP region domain protein
YP_004111604.1	KEGG: ddf:DEFDS_2106 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR
YP_004111605.1	TIGRFAM: seryl-tRNA synthetase; KEGG: gsu:GSU0037 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like
YP_004111606.1	PFAM: Uncharacterised protein family UPF0126; KEGG: wsu:WS1947 hypothetical protein
YP_004111607.1	KEGG: ddf:DEFDS_1662 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein
YP_004111608.1	KEGG: glo:Glov_2499 CDP-diacylglycerol/serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004111609.1	TIGRFAM: phosphatidylserine decarboxylase related protein; KEGG: dak:DaAHT2_0727 phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase-related
YP_004111610.1	KEGG: tad:TRIADDRAFT_54650 hypothetical protein
YP_004111611.1	KEGG: gla:GL50803_115479 hypothetical protein
YP_004111612.1	KEGG: bhy:BHWA1_01626 hypothetical protein
YP_004111613.1	PFAM: Type II secretion system F domain; KEGG: ppr:PBPRA3279 putative MSHA biogenesis protein MshG
YP_004111614.1	KEGG: dtu:Dtur_0873 general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase
YP_004111615.1	TIGRFAM: succinyl-CoA synthetase, beta subunit; KEGG: bts:Btus_1482 succinyl-CoA synthetase, beta subunit; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase
YP_004111616.1	KEGG: bts:Btus_1483 succinyl-CoA synthetase, alpha subunit; TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding domain protein
YP_004111617.1	PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: ddf:DEFDS_1074 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)
YP_004111618.1	PFAM: protein of unknown function DUF195; KEGG: rpi:Rpic_0900 protein of unknown function DUF195
YP_004111619.1	TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: gsu:GSU0567 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase
YP_004111620.1	PFAM: NUDIX hydrolase; KEGG: dap:Dacet_0505 NUDIX hydrolase
YP_004111621.1	TIGRFAM: Glutaminase, core; KEGG: vap:Vapar_0137 glutaminase; PFAM: Glutaminase, core
YP_004111622.1	PFAM: beta-lactamase; KEGG: kra:Krad_0951 beta-lactamase
YP_004111623.1	SMART: AAA ATPase; KEGG: ddf:DEFDS_0394 hypothetical protein
YP_004111624.1	PFAM: Protein of unknown function DUF2064; KEGG: amr:AM1_2433 hypothetical protein
YP_004111625.1	KEGG: dsh:Dshi_2091 putative glycosyltransferase
YP_004111626.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SNARE associated Golgi protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mmw:Mmwyl1_0176 SNARE associated Golgi protein
YP_004111627.1	KEGG: slt:Slit_2771 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein
YP_004111628.1	PFAM: protein of unknown function DUF1109; KEGG: slt:Slit_2772 protein of unknown function DUF1109
YP_004111629.1	PFAM: protein of unknown function DUF81; KEGG: nmu:Nmul_A1650 hypothetical protein
YP_004111630.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: lbf:LBF_0148 potassium uptake system NAD-binding protein
YP_004111631.1	KEGG: hor:Hore_11710 potassium uptake protein, TrkH family; PFAM: cation transporter
YP_004111632.1	PFAM: Methyltransferase type 11; KEGG: gur:Gura_3310 methyltransferase type 11
YP_004111633.1	PFAM: DsrE family protein; KEGG: dia:Dtpsy_2206 DsrE family protein
YP_004111634.1	PFAM: aminotransferase class V; KEGG: aeh:Mlg_0624 aminotransferase, class V
YP_004111635.1	KEGG: gur:Gura_3309 regulatory protein, ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR
YP_004111636.1	KEGG: aha:AHA_1548 hypothetical protein; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase
YP_004111637.1	KEGG: glo:Glov_1979 hypothetical protein
YP_004111638.1	PFAM: Radical SAM domain protein; KEGG: gvi:gll0887 hypothetical protein
YP_004111639.1	KEGG: rce:RC1_0628 5-oxoprolinase; PFAM: Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein
YP_004111640.1	KEGG: tjr:TherJR_0291 ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23
YP_004111641.1	KEGG: ddf:DEFDS_1776 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7
YP_004111642.1	KEGG: gem:GM21_3331 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein
YP_004111643.1	KEGG: har:HEAR3167 30S ribosomal subunit protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10
YP_004111644.1	KEGG: dap:Dacet_0372 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3
YP_004111645.1	PFAM: ribosomal protein L4/L1e; KEGG: gct:GC56T3_0107 ribosomal protein L4/L1e
YP_004111646.1	PFAM: Ribosomal protein L25/L23; KEGG: gsu:GSU2855 50S ribosomal protein L23
YP_004111647.1	KEGG: bha:BH0137 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2
YP_004111648.1	KEGG: ddr:Deide_18910 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15
YP_004111649.1	KEGG: gwc:GWCH70_0116 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17
YP_004111650.1	TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: gem:GM21_3322 30S ribosomal protein S3; SMART: KH domain protein
YP_004111651.1	KEGG: hor:Hore_01240 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16
YP_004111652.1	KEGG: clj:CLJU_c40960 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29
YP_004111653.1	KEGG: tde:TDE0776 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17
YP_004111654.1	KEGG: ddf:DEFDS_1762 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e
YP_004111655.1	TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: aac:Aaci_2700 50S ribosomal protein L24; SMART: KOW domain protein
YP_004111656.1	KEGG: afl:Aflv_0117 50S ribosomal protein L5
YP_004111657.1	KEGG: ssm:Spirs_0968 ribosomal protein S14; manually curated; PFAM: ribosomal protein S14
YP_004111658.1	PFAM: ribosomal protein S8; KEGG: cdl:CDR20291_0081 30S ribosomal protein S8
YP_004111659.1	KEGG: vpr:Vpar_1479 ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain
YP_004111660.1	KEGG: pjd:Pjdr2_5664 ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E
YP_004111661.1	KEGG: dbr:Deba_2921 ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5
YP_004111662.1	KEGG: slg:SLGD_00790 LSU ribosomal protein L30p (L7e); TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30
YP_004111663.1	TIGRFAM: ribosomal protein L15; KEGG: bha:BH0153 50S ribosomal protein L15
YP_004111664.1	KEGG: gbm:Gbem_0953 preprotein translocase subunit SecY; TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein
YP_004111665.1	KEGG: tye:THEYE_A1836 adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain-containing protein
YP_004111666.1	KEGG: bpf:BpOF4_08670 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein
YP_004111667.1	KEGG: ddf:DEFDS_1749 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36
YP_004111668.1	KEGG: ttm:Tthe_0458 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13
YP_004111669.1	KEGG: pjd:Pjdr2_5653 ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11
YP_004111670.1	SMART: RNA-binding S4 domain protein; manually curated; KEGG: glo:Glov_1372 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein
YP_004111671.1	TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: sfu:Sfum_1582 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type
YP_004111672.1	KEGG: ddf:DEFDS_1744 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17
YP_004111673.1	KEGG: ddf:DEFDS_0857 D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein
YP_004111674.1	KEGG: gur:Gura_2686 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase
YP_004111675.1	KEGG: aha:AHA_3838 chemotaxis protein CheV; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver
YP_004111676.1	KEGG: pca:Pcar_0583 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein
YP_004111677.1	KEGG: sbn:Sbal195_3380 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_004111678.1	KEGG: sbm:Shew185_3248 HipA domain-containing protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein
YP_004111679.1	PFAM: nucleoside recognition domain protein; KEGG: sfu:Sfum_3415 nucleoside recognition domain-containing protein
YP_004111680.1	PFAM: Pirin domain protein; KEGG: chu:CHU_2096 pirin-related protein
YP_004111681.1	KEGG: cpb:Cphamn1_0567 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR
YP_004111682.1	KEGG: dak:DaAHT2_0579 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter
YP_004111683.1	KEGG: cbe:Cbei_2111 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight
YP_004111684.1	PFAM: permease; KEGG: tel:tll1886 hypothetical protein
YP_004111685.1	TIGRFAM: redox-active disulfide protein 2; KEGG: ank:AnaeK_4013 redox-active disulfide protein 2
YP_004111686.1	SMART: Rhodanese domain protein; KEGG: nis:NIS_0081 hypothetical protein
YP_004111687.1	KEGG: dhd:Dhaf_1194 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR
YP_004111688.1	KEGG: dhd:Dhaf_1193 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein
YP_004111689.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: chl:Chy400_0023 phosphonate ABC transporter, periplasmic phosphonate-binding protein
YP_004111690.1	PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence, subgroup; molybdopterin oxidoreductase; KEGG: gur:Gura_0470 molybdopterin oxidoreductase
YP_004111691.1	KEGG: dap:Dacet_2122 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_004111692.1	KEGG: glo:Glov_1147 cytoplasmic chaperone TorD family protein
YP_004111693.1	KEGG: glo:Glov_1146 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_004111694.1	PFAM: protein of unknown function DUF583; KEGG: nam:NAMH_1534 hypothetical protein
YP_004111695.1	PFAM: Peptidase M23; KEGG: pin:Ping_1544 peptidase M23B
YP_004111696.1	KEGG: aeh:Mlg_1375 hypothetical protein
YP_004111697.1	KEGG: nhl:Nhal_3544 ATP-binding region ATPase domain protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein
YP_004111698.1	KEGG: nhl:Nhal_3545 sigma-54 factor interaction domain-containing protein; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_004111699.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dap:Dacet_1231 tRNA/rRNA methyltransferase (SpoU)
YP_004111701.1	KEGG: nfa:nfa38150 putative ATP-binding protein
YP_004111702.1	KEGG: rba:RB10920 hypothetical protein
YP_004111703.1	KEGG: gme:Gmet_1268 3-isopropylmalate dehydratase large subunit; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain-containing protein
YP_004111704.1	PFAM: aconitate hydratase domain-containing protein; KEGG: ppd:Ppro_1927 aconitate hydratase domain-containing protein
YP_004111705.1	KEGG: dal:Dalk_4802 hypothetical protein
YP_004111706.1	manually curated; PFAM: helix-turn-helix domain protein; KEGG: abu:Abu_1483 putative transcriptional regulator; SMART: helix-turn-helix domain protein
YP_004111707.1	KEGG: dal:Dalk_4802 hypothetical protein
YP_004111708.1	KEGG: rfr:Rfer_3050 hypothetical protein
YP_004111709.1	KEGG: rfr:Rfer_3051 hypothetical protein
YP_004111710.1	KEGG: mca:MCA1608 hypothetical protein
YP_004111711.1	KEGG: psa:PST_3455 ATPase of the AAA+ class; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase
YP_004111712.1	KEGG: pwa:Pecwa_3426 hypothetical protein
YP_004111713.1	KEGG: rpc:RPC_4896 hypothetical protein
YP_004111714.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: rfr:Rfer_4037 filamentation induced by cAMP protein Fic
YP_004111715.1	KEGG: mgm:Mmc1_3051 transcriptional factor
YP_004111716.1	PFAM: protein of unknown function DUF86; KEGG: gem:GM21_1251 protein of unknown function DUF86
YP_004111717.1	KEGG: ckr:CKR_0896 NAD synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004111718.1	PFAM: Colicin V production protein; KEGG: bfs:BF0220 hypothetical protein
YP_004111719.1	KEGG: tma:TM0690 hypothetical protein
YP_004111720.1	PFAM: histidine triad (HIT) protein; KEGG: gme:Gmet_1225 histidine triad (HIT) protein
YP_004111721.1	KEGG: cim:CIMG_07439 hypothetical protein
YP_004111722.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dat:HRM2_32950 putative permease of the drug/metabolite transporter (DMT) superfamily
YP_004111723.1	PFAM: isochorismatase hydrolase; KEGG: aoe:Clos_0134 isochorismatase hydrolase
YP_004111724.1	KEGG: ddf:DEFDS_1285 MntR family transcriptional regulator; PFAM: iron dependent repressor; SMART: iron dependent repressor
YP_004111726.1	TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: sub:SUB0816 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK
YP_004111727.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: dsa:Desal_0708 FxsA cytoplasmic membrane protein
YP_004111728.1	KEGG: glo:Glov_1954 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein
YP_004111729.1	PFAM: ROK family protein; KEGG: kol:Kole_1176 ROK family protein
YP_004111730.1	KEGG: dap:Dacet_2480 flagellar hook-basal body protein; TIGRFAM: flagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein
YP_004111731.1	KEGG: ddf:DEFDS_2152 flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein
YP_004111732.1	TIGRFAM: flagella basal body P-ring formation protein FlgA; KEGG: bra:BRADO5039 flagellar basal body P-ring biosynthesis protein FlgA
YP_004111733.1	KEGG: mmu:100044472 similar to Proline-rich protein BstNI subfamily 1
YP_004111734.1	TIGRFAM: dephospho-CoA kinase; KEGG: ank:AnaeK_2777 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase
YP_004111735.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: hha:Hhal_1097 lipid A biosynthesis acyltransferase
YP_004111736.1	KEGG: aar:Acear_0742 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein
YP_004111737.1	KEGG: gem:GM21_0505 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site
YP_004111738.1	KEGG: gsu:GSU3071 UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein
YP_004111739.1	PFAM: cell cycle protein; KEGG: geo:Geob_0779 cell division protein FtsW
YP_004111740.1	KEGG: dba:Dbac_2606 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28
YP_004111741.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gsu:GSU0016 peptidyl-prolyl cis-trans isomerase domain-containing protein
YP_004111742.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: sat:SYN_02487 peptidyl-prolyl cis-trans isomerase
YP_004111743.1	KEGG: sth:STH3229 hypothetical protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein
YP_004111744.1	KEGG: hha:Hhal_1832 hypothetical protein
YP_004111745.1	KEGG: hha:Hhal_1831 tetratricopeptide TPR_4
YP_004111746.1	KEGG: hha:Hhal_1830 hypothetical protein
YP_004111747.1	KEGG: meh:M301_0029 transglutaminase domain protein; PFAM: transglutaminase domain-containing protein; transglutaminase domain protein; SMART: transglutaminase domain-containing protein
YP_004111748.1	PFAM: protein of unknown function DUF404; protein of unknown function DUF407; protein of unknown function DUF403; KEGG: meh:M301_0028 protein of unknown function DUF404
YP_004111749.1	KEGG: psa:PST_2508 methyl-accepting chemotaxis transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004111750.1	KEGG: tdn:Suden_0009 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver
YP_004111751.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: dak:DaAHT2_0675 cytochrome-c3 hydrogenase
YP_004111752.1	KEGG: dak:DaAHT2_0674 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_004111753.1	KEGG: dma:DMR_12590 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004111754.1	KEGG: nhl:Nhal_1910 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase
YP_004111755.1	KEGG: pca:Pcar_1357 hypothetical protein
YP_004111756.1	KEGG: sta:STHERM_c05440 transcriptional regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_004111757.1	KEGG: afw:Anae109_0620 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_004111758.1	PFAM: dihydrouridine synthase DuS; KEGG: dau:Daud_0127 nifR3 family TIM-barrel protein
YP_004111759.1	KEGG: sdl:Sdel_0606 phosphoenolpyruvate carboxykinase (ATP); TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); PFAM: phosphoenolpyruvate carboxykinase (ATP)
YP_004111760.1	KEGG: dap:Dacet_1843 diguanylate cyclase; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004111761.1	PFAM: peptidase U32; KEGG: pth:PTH_1069 collagenase and related proteases
YP_004111762.1	KEGG: mta:Moth_1712 peptidase U32
YP_004111763.1	KEGG: glo:Glov_1138 hypothetical protein
YP_004111764.1	PFAM: response regulator receiver; KEGG: dap:Dacet_0874 putative anti-sigma regulatory factor, serine/threonine protein kinase
YP_004111765.1	KEGG: glo:Glov_2813 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein
YP_004111766.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bbe:BBR47_40270 hypothetical protein
YP_004111767.1	KEGG: pca:Pcar_1447 putative bifunctional enzyme 3,4-dihydroxy-2-butanone 4-phosphate/GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II
YP_004111768.1	TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: aoe:Clos_2573 RpiB/LacA/LacB family sugar-phosphate isomerase; PFAM: Ribose/galactose isomerase
YP_004111769.1	KEGG: dap:Dacet_1834 CrcB protein; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein
YP_004111770.1	PFAM: protein of unknown function DUF523; protein of unknown function DUF1722; KEGG: nth:Nther_2140 protein of unknown function DUF1722
YP_004111771.1	PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: ttr:Tter_0083 tetratricopeptide TPR_2 repeat protein
YP_004111772.1	KEGG: sat:SYN_01036 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; helicase domain protein; SecA Wing and Scaffold; SEC-C motif domain protein
YP_004111773.1	KEGG: dak:DaAHT2_2274 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif
YP_004111774.1	KEGG: gsu:GSU2651 amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004111775.1	KEGG: gsu:GSU2650 amino acid ABC transporter, permease protein, putative; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_004111776.1	KEGG: gsu:GSU2649 amino acid ABC transporter, amino acid-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor
YP_004111777.1	PFAM: Auxin Efflux Carrier; KEGG: aeh:Mlg_0872 auxin efflux carrier
YP_004111778.1	KEGG: ddf:DEFDS_1934 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; Asn/Gln amidotransferase
YP_004111779.1	KEGG: cpb:Cphamn1_2540 GTP-binding signal recognition particle SRP54, G-domain
YP_004111780.1	KEGG: chy:CHY_2201 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase
YP_004111781.1	KEGG: amt:Amet_2462 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold
YP_004111782.1	KEGG: neu:NE1223 putative transposase
YP_004111783.1	KEGG: bpt:Bpet3736 putative transposase
YP_004111784.1	KEGG: bpt:Bpet3736 putative transposase
YP_004111785.1	KEGG: pmz:HMPREF0659_A7193 hypothetical protein
YP_004111786.1	KEGG: pmz:HMPREF0659_A7192 hypothetical protein
YP_004111787.1	KEGG: sun:SUN_2302 transcriptional regulator
YP_004111788.1	PFAM: protein of unknown function DUF1232; KEGG: dba:Dbac_1295 protein of unknown function DUF1232
YP_004111789.1	KEGG: csa:Csal_3241 hypothetical protein
YP_004111790.1	KEGG: sun:SUN_2302 transcriptional regulator
YP_004111791.1	TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; KEGG: tcx:Tcr_0404 ATP-dependent protease ATP-binding subunit HslU; SMART: AAA ATPase
YP_004111792.1	PFAM: 20S proteasome A and B subunits; KEGG: tgr:Tgr7_0056 ATP-dependent protease peptidase subunit
YP_004111793.1	TIGRFAM: gid protein; KEGG: gsu:GSU2547 tRNA (uracil-5-)-methyltransferase Gid; PFAM: glucose-inhibited division protein A
YP_004111794.1	KEGG: dak:DaAHT2_0137 hypothetical protein
YP_004111795.1	PFAM: Patatin; KEGG: pca:Pcar_0066 alpha-beta hydrolase family esterase
YP_004111796.1	KEGG: sfu:Sfum_3720 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase
YP_004111797.1	KEGG: sat:SYN_02563 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III
YP_004111798.1	KEGG: sfu:Sfum_3718 hypothetical protein; manually curated; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
YP_004111799.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sfu:Sfum_3717 short-chain dehydrogenase/reductase SDR
YP_004111800.1	KEGG: sfu:Sfum_3716 phosphopantetheine-binding
YP_004111801.1	PFAM: Beta-ketoacyl synthase; KEGG: sfu:Sfum_3714 beta-ketoacyl synthase
YP_004111802.1	KEGG: sfu:Sfum_3713 hypothetical protein
YP_004111803.1	KEGG: sat:SYN_02568 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II
YP_004111804.1	TIGRFAM: dethiobiotin synthase; KEGG: sfu:Sfum_3711 dethiobiotin synthase
YP_004111805.1	KEGG: tjr:TherJR_1142 glutamate-1-semialdehyde-2,1-aminomutase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III
YP_004111806.1	TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: glo:Glov_3496 signal recognition particle-docking protein FtsY; SMART: AAA ATPase
YP_004111807.1	PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: aba:Acid345_4642 putative 6-pyruvoyl tetrahydropterin synthase
YP_004111808.1	KEGG: ddf:DEFDS_1680 hypothetical protein
YP_004111809.1	KEGG: pfl:PFL_0418 methyl-accepting chemotaxis transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004111810.1	KEGG: svo:SVI_3920 chemotaxis protein CheV; PFAM: CheW domain protein; SMART: CheW domain protein
YP_004111811.1	KEGG: tgr:Tgr7_2481 putative phage repressor; PFAM: helix-turn-helix domain protein; Peptidase S24/S26A/S26B, conserved region; SMART: helix-turn-helix domain protein
YP_004111812.1	PFAM: protein of unknown function DUF481; KEGG: tgr:Tgr7_2791 hypothetical protein
YP_004111813.1	PFAM: methyltransferase small; KEGG: sul:SYO3AOP1_0212 methyltransferase small
YP_004111814.1	PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_2161 M48 family peptidase
YP_004111815.1	KEGG: pph:Ppha_2084 hypothetical protein
YP_004111816.1	PFAM: 5'-Nucleotidase domain-containing protein; KEGG: sde:Sde_0580 alkaline phosphatase
YP_004111817.1	PFAM: protein of unknown function DUF342; KEGG: sdl:Sdel_1052 protein of unknown function DUF342
YP_004111818.1	KEGG: cff:CFF8240_0806 hypothetical protein
YP_004111819.1	KEGG: vap:Vapar_5179 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein
YP_004111820.1	KEGG: tgr:Tgr7_1014 transglutaminase domain protein; PFAM: Protein of unknown function DUF2126; transglutaminase domain protein; transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein
YP_004111821.1	KEGG: tin:Tint_0888 channel protein, hemolysin III family; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein
YP_004111822.1	KEGG: gem:GM21_3513 hypothetical protein
YP_004111823.1	PFAM: porin Gram-negative type; KEGG: tgr:Tgr7_2784 putative porin
YP_004111824.1	KEGG: sat:SYN_02691 KID repeat-containing protein
YP_004111825.1	KEGG: gem:GM21_3513 hypothetical protein
YP_004111826.1	KEGG: gem:GM21_3513 hypothetical protein
YP_004111827.1	KEGG: gem:GM21_3513 hypothetical protein
YP_004111828.1	KEGG: sbp:Sbal223_1362 NrfJ-related protein
YP_004111829.1	KEGG: ccv:CCV52592_0447 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane
YP_004111830.1	KEGG: dap:Dacet_0090 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp
YP_004111831.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: mei:Msip34_2472 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: GGDEF domain containing protein
YP_004111832.1	KEGG: ddf:DEFDS_0192 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type
YP_004111833.1	TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: sfu:Sfum_0100 ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP
YP_004111834.1	TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: toc:Toce_1766 ATP-dependent Clp protease ATP-binding subunit ClpX; SMART: AAA ATPase
YP_004111835.1	KEGG: ath:AT1G01660 U-box domain-containing protein
YP_004111836.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: slp:Slip_2104 oxidoreductase FAD/NAD(P)-binding domain protein
YP_004111837.1	KEGG: sat:SYN_00606 glutamate synthase (NADPH); TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004111838.1	PFAM: protein of unknown function DUF342; KEGG: ssm:Spirs_1587 protein of unknown function DUF342
YP_004111839.1	PFAM: protein of unknown function DUF342; KEGG: aoe:Clos_1511 hypothetical protein
YP_004111840.1	PFAM: protein of unknown function DUF116; KEGG: afn:Acfer_0312 protein of unknown function DUF116
YP_004111841.1	KEGG: mxa:MXAN_0364 hypothetical protein
YP_004111842.1	KEGG: pau:PA14_00190 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein
YP_004111843.1	TIGRFAM: peptide deformylase; KEGG: mxa:MXAN_1430 peptide deformylase; PFAM: formylmethionine deformylase
YP_004111844.1	PFAM: glycosyl transferase family 9; KEGG: nmi:NMO_1348 ADP-heptose--LPS heptosyltransferase II
YP_004111845.1	PFAM: glycosyl transferase family 9; KEGG: gme:Gmet_2345 lipopolysaccharide heptosyltransferase II
YP_004111846.1	KEGG: pbr:PB2503_12849 mechanosensitive ion channel family protein
YP_004111847.1	KEGG: ser:SERP0686 spermidine/putrescine ABC transporter, ATP-binding protein
YP_004111848.1	TIGRFAM: glutamate racemase; KEGG: gem:GM21_0260 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase
YP_004111849.1	TIGRFAM: ribonuclease PH; KEGG: mei:Msip34_0047 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2
YP_004111850.1	KEGG: swo:Swol_0454 HAM1 protein; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein
YP_004111851.1	KEGG: ccv:CCV52592_0205 hypothetical protein
YP_004111852.1	KEGG: ddf:DEFDS_1158 cell shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl
YP_004111853.1	KEGG: ddf:DEFDS_1618 Rrf2 family transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074
YP_004111854.1	PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: gme:Gmet_0066 Fmu, rRNA SAM-dependent methyltransferase:Nop2p
YP_004111855.1	KEGG: cro:ROD_26211 putative phage repressor protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_004111856.1	PFAM: OstA family protein; KEGG: glo:Glov_1235 organic solvent tolerance protein
YP_004111857.1	KEGG: ote:Oter_2353 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein
YP_004111858.1	TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: ddf:DEFDS_1391 tRNA-i(6)A37 thiotransferase enzyme; SMART: Elongator protein 3/MiaB/NifB
YP_004111859.1	KEGG: swo:Swol_2395 hypothetical protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain
YP_004111860.1	TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: pca:Pcar_2230 phosphoribosylcarboxyaminoimidazole; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_004111861.1	KEGG: hmo:HM1_1450 5,10-methylenetetrahydrofolate reductase
YP_004111862.1	KEGG: seu:SEQ_0330 TatD related DNase; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease
YP_004111863.1	KEGG: dap:Dacet_2363 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein
YP_004111864.1	KEGG: pca:Pcar_1693 PSP-like protein; manually curated; PFAM: PSP1 domain protein
YP_004111865.1	KEGG: aar:Acear_0044 DNA polymerase III, delta prime subunit
YP_004111866.1	TIGRFAM: thymidylate kinase; KEGG: chy:CHY_0050 thymidylate kinase; PFAM: thymidylate kinase
YP_004111867.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: swo:Swol_2044 YbaK/EbsC family protein
YP_004111868.1	KEGG: par:Psyc_0667 glycosyl transferase, group 1
YP_004111869.1	KEGG: tpt:Tpet_1143 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_004111870.1	PFAM: cytochrome c oxidase subunit II; KEGG: afu:AF0144 cytochrome c oxidase, subunit II (CbaB)
YP_004111871.1	PFAM: cytochrome c oxidase subunit II; KEGG: fpl:Ferp_0126 hypothetical protein
YP_004111872.1	KEGG: plm:Plim_0810 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase
YP_004111873.1	KEGG: nmr:Nmar_1443 blue (type1) copper domain-containing protein
YP_004111874.1	KEGG: dhd:Dhaf_3473 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004111875.1	PFAM: protein of unknown function DUF214; KEGG: dhd:Dhaf_3474 protein of unknown function DUF214
YP_004111876.1	KEGG: dsy:DSY0256 hypothetical protein
YP_004111877.1	KEGG: bcr:BCAH187_A1452 putative lipoprotein
YP_004111878.1	KEGG: mac:MA1357 plastocyanin/azurin family copper binding protein
YP_004111879.1	SMART: Lysozyme subfamily 2; KEGG: tle:Tlet_0904 hypothetical protein
YP_004111880.1	TIGRFAM: alpha-glucan phosphorylase; KEGG: gur:Gura_4193 alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35
YP_004111881.1	SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: sfu:Sfum_0876 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein
YP_004111882.1	KEGG: gur:Gura_1879 beta-ketoacyl synthase; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase
YP_004111883.1	KEGG: asu:Asuc_2000 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding
YP_004111884.1	KEGG: bld:BLi01812 hypothetical protein; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR
YP_004111885.1	KEGG: aca:ACP_1923 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase
YP_004111886.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: hna:Hneap_1806 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YP_004111887.1	KEGG: ddf:DEFDS_0149 fatty acid/phospholipid synthesis protein PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein
YP_004111888.1	KEGG: pca:Pcar_1434 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein
YP_004111889.1	KEGG: ddf:DEFDS_2112 two-component system, NtrC family, sensor histidine kinase; PFAM: histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_004111890.1	KEGG: ddf:DEFDS_2111 two-component system, NtrC family, transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_004111891.1	KEGG: nam:NAMH_0796 major facilitator superfamily MFS_1; manually curated; PFAM: major facilitator superfamily MFS_1
YP_004111892.1	KEGG: pca:Pcar_1942 putative sugar phosphatase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA
YP_004111893.1	PFAM: protein of unknown function DUF1239; KEGG: gdj:Gdia_0335 protein of unknown function DUF1239
YP_004111894.1	PFAM: OstA family protein; KEGG: dak:DaAHT2_2208 lipopolysaccharide transport periplasmic protein LptA
YP_004111895.1	KEGG: hna:Hneap_0752 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004111896.1	KEGG: dbr:Deba_1961 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor
YP_004111897.1	KEGG: pca:Pcar_1937 ribosome-associated protein Y (PSrp-1); TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA
YP_004111898.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ddf:DEFDS_1046 PTS system fructose-specific transporter subunit IIA
YP_004111899.1	KEGG: gsu:GSU1430 hypothetical protein
YP_004111900.1	KEGG: geo:Geob_2606 protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation protein E; GAF domain protein; Na+/solute symporter; SMART: protein phosphatase 2C domain protein; GAF domain protein
YP_004111901.1	KEGG: gem:GM21_1585 anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS
YP_004111902.1	PFAM: ATP-binding region ATPase domain protein; KEGG: gsu:GSU1426 RsbW protein, putative
YP_004111903.1	TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; KEGG: ddf:DEFDS_0062 fructose-bisphosphate aldolase class II; PFAM: ketose-bisphosphate aldolase class-II
YP_004111904.1	KEGG: glo:Glov_0505 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein
YP_004111905.1	KEGG: vvi:100262104 hypothetical protein LOC100262104
YP_004111906.1	KEGG: dat:HRM2_30410 PilD; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV
YP_004111907.1	KEGG: tra:Trad_0281 peptidase M56 BlaR1
YP_004111908.1	KEGG: ajs:Ajs_0808 hypothetical protein
YP_004111909.1	KEGG: blo:BL1684 dihydropteroate synthase 1
YP_004111910.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: gvi:gvip080 NADH dehydrogenase subunit A
YP_004111911.1	TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: hau:Haur_4981 NADH dehydrogenase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_004111912.1	PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: cts:Ctha_2563 NADH (or F420H2) dehydrogenase, subunit C
YP_004111913.1	KEGG: dsa:Desal_1492 NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase chain 49kDa
YP_004111914.1	PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: slp:Slip_0253 respiratory-chain NADH dehydrogenase subunit 1
YP_004111915.1	KEGG: drm:Dred_2041 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_004111916.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: gct:GC56T3_3335 NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_004111917.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: mar:MAE_56420 NADH dehydrogenase subunit K
YP_004111918.1	KEGG: chy:CHY_1417 proton-translocating NADH-quinone oxidoreductase, L subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein
YP_004111919.1	KEGG: amr:AM1_2126 proton-translocating NAD(P)H-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_004111920.1	KEGG: tjr:TherJR_2028 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_004111921.1	KEGG: rpb:RPB_1030 methyl-accepting chemotaxis sensory transducer
YP_004111922.1	KEGG: tgr:Tgr7_1963 putative methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004111923.1	KEGG: shw:Sputw3181_1214 putative CheW protein; PFAM: response regulator receiver; CheW domain protein; SMART: response regulator receiver; CheW domain protein
YP_004111924.1	KEGG: gsu:GSU0905 hypothetical protein
YP_004111925.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: tgr:Tgr7_1846 metal dependent phosphohydrolase
YP_004111926.1	KEGG: gsu:GSU2575 sensor histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver
YP_004111927.1	KEGG: wsu:WS2088 putative two-component regulator; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004111928.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: mca:MCA1533 sensory box protein; SMART: GGDEF domain containing protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein
YP_004111929.1	PFAM: Saccharopine dehydrogenase; KEGG: pfl:PFL_3454 hypothetical protein
YP_004111930.1	KEGG: ddf:DEFDS_0941 hypothetical protein
YP_004111931.1	KEGG: hiq:CGSHiGG_00130 Sel1 domain-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein
YP_004111932.1	KEGG: ssm:Spirs_2409 methyltransferase type 12
YP_004111933.1	KEGG: hha:Hhal_0549 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004111934.1	KEGG: dap:Dacet_2008 response regulator receiver protein; PFAM: response regulator receiver; Stage II sporulation protein E; SMART: response regulator receiver; protein phosphatase 2C domain protein
YP_004111935.1	KEGG: aeh:Mlg_1465 lytic murein transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein
YP_004111936.1	PFAM: aminotransferase class I and II; KEGG: tye:THEYE_A0342 aspartate aminotransferase
YP_004111937.1	TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: ddf:DEFDS_0158 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase
YP_004111938.1	manually curated; TIGRFAM: methyltransferase; KEGG: mta:Moth_0936 methyltransferase small; PFAM: Conserved hypothetical protein CHP00095
YP_004111939.1	KEGG: aco:Amico_1464 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein
YP_004111940.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pph:Ppha_1200 anti-sigma-factor antagonist
YP_004111941.1	PFAM: Polyprenyl synthetase; KEGG: ddf:DEFDS_0648 octaprenyl-diphosphate synthase
YP_004111942.1	PFAM: Domain of unknown function DUF1858; KEGG: mta:Moth_2496 hypothetical protein
YP_004111943.1	PFAM: zinc/iron permease; KEGG: dak:DaAHT2_0624 zinc/iron permease
YP_004111944.1	KEGG: cth:Cthe_1955 RNA binding S1; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold
YP_004111945.1	KEGG: sdl:Sdel_0043 hypothetical protein
YP_004111946.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: ttr:Tter_1676 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_004111947.1	PFAM: Auxin Efflux Carrier; KEGG: maq:Maqu_1182 auxin efflux carrier
YP_004111948.1	KEGG: pca:Pcar_1976 hypothetical protein
YP_004111949.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: gca:Galf_2237 UBA/ThiF-type NAD/FAD binding protein
YP_004111950.1	KEGG: gur:Gura_1785 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004111951.1	PFAM: major facilitator superfamily MFS_1; KEGG: bcu:BCAH820_1115 major facilitator family transporter
YP_004111952.1	KEGG: dal:Dalk_0919 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like
YP_004111953.1	KEGG: psl:Psta_2668 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n
YP_004111954.1	KEGG: sti:Sthe_1449 ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18
YP_004111955.1	KEGG: gsu:GSU3068 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein
YP_004111956.1	KEGG: tle:Tlet_0539 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein
YP_004111957.1	KEGG: sdl:Sdel_1848 CiaB protein
YP_004111958.1	KEGG: aeh:Mlg_0311 hypothetical protein
YP_004111959.1	KEGG: dde:Dde_2501 hypothetical protein
YP_004111960.1	KEGG: nde:NIDE0136 putative type I restriction endonuclease, R subunit
YP_004111961.1	KEGG: dda:Dd703_3692 hypothetical protein
YP_004111962.1	KEGG: chl:Chy400_2920 hypothetical protein
YP_004111963.1	KEGG: neu:NE1884 DNA ligase III
YP_004111964.1	KEGG: dde:Dde_2493 DEAD/DEAH box helicase-like; PFAM: type III restriction protein res subunit; DNA primase small subunit; helicase domain protein; SMART: DEAD-like helicase
YP_004111965.1	KEGG: hha:Hhal_2075 hypothetical protein
YP_004111966.1	KEGG: saf:SULAZ_0572 cytotoxic translational repressor of toxin-antitoxin system RelE
YP_004111967.1	KEGG: bmy:Bm1_07455 reverse transcriptase
YP_004111968.1	PFAM: Domain of unknown function DUF1801; KEGG: lch:Lcho_4161 hypothetical protein
YP_004111969.1	KEGG: rfr:Rfer_2744 putative acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase
YP_004111970.1	KEGG: lba:Lebu_0500 5-nitroimidazole antibiotic resistance protein
YP_004111971.1	KEGG: pmy:Pmen_4544 DNA polymerase III subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_004111972.1	KEGG: pat:Patl_2504 cyclic nucleotide-binding protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; SMART: cyclic nucleotide-binding; CBS domain containing protein
YP_004111973.1	KEGG: pat:Patl_2505 choline/carnitine/betaine transporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter
YP_004111974.1	KEGG: tgo:TGME49_009850 hypothetical protein
YP_004111975.1	KEGG: tel:tll2103 alanyl-tRNA synthetase
YP_004111976.1	KEGG: aba:Acid345_1898 glycosyl hydrolase
YP_004111977.1	KEGG: asa:ASA_3763 transcriptional activator AsaR; PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; SMART: regulatory protein LuxR
YP_004111978.1	KEGG: dvi:Dvir_GJ10055 GJ10055 gene product from transcript GJ10055-RA
YP_004111979.1	PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: geo:Geob_2795 indolepyruvate oxidoreductase subunit beta
YP_004111980.1	KEGG: dak:DaAHT2_0109 indolepyruvate ferredoxin oxidoreductase, alpha subunit; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
YP_004111981.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: srm:SRM_03035 thiol:disulfide interchange protein DsbD
YP_004111982.1	PFAM: alpha/beta hydrolase fold; KEGG: gsu:GSU3157 alpha/beta fold family hydrolase
YP_004111983.1	KEGG: xca:xccb100_3954 uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily
YP_004111984.1	PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; KEGG: ctt:CtCNB1_2364 hypothetical protein
YP_004111985.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: bra:BRADO6394 hypothetical protein
YP_004111986.1	KEGG: vfm:VFMJ11_A0201 ferric aerobactin receptor (cloacin receptor)
YP_004111987.1	KEGG: tkm:TK90_1524 3-demethylubiquinone-9 3-methyltransferase
YP_004111988.1	PFAM: GCN5-related N-acetyltransferase; KEGG: vcm:VCM66_A0318 GCN5-related N-acetyltransferase
YP_004111989.1	PFAM: HipA domain protein; KEGG: pol:Bpro_1570 hypothetical protein
YP_004111990.1	KEGG: geo:Geob_0081 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_004111991.1	TIGRFAM: nitrogenase iron protein; KEGG: dap:Dacet_1046 nitrogenase iron protein; PFAM: NifH/frxC-family protein
YP_004111992.1	TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; KEGG: dap:Dacet_1047 nitrogenase molybdenum-iron protein alpha chain; PFAM: oxidoreductase/nitrogenase component 1
YP_004111993.1	KEGG: ssm:Spirs_0440 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein
YP_004111994.1	KEGG: dap:Dacet_1049 nitrogen fixation protein FixT; TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein
YP_004111995.1	TIGRFAM: ketol-acid reductoisomerase; KEGG: wsu:WS1878 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase
YP_004111996.1	TIGRFAM: L-aspartate oxidase; KEGG: sus:Acid_7341 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_004111997.1	KEGG: asu:Asuc_0103 O-antigen polymerase
YP_004111998.1	PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: rci:RCIX995 hypothetical protein
YP_004111999.1	TIGRFAM: alanine racemase; KEGG: pca:Pcar_2234 alanine racemase; PFAM: alanine racemase domain protein
YP_004112000.1	PFAM: protein of unknown function DUF140; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component
YP_004112001.1	KEGG: dbr:Deba_0203 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112002.1	PFAM: Mammalian cell entry related domain protein; KEGG: ddf:DEFDS_1121 ABC transporter substrate-binding protein
YP_004112003.1	KEGG: tkm:TK90_2062 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_004112004.1	PFAM: protein of unknown function DUF214; KEGG: tkm:TK90_2063 protein of unknown function DUF214
YP_004112005.1	KEGG: tkm:TK90_2064 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112006.1	KEGG: tte:TTE0733 capsular polysaccharide biosynthesis homolog YwqC
YP_004112007.1	KEGG: pat:Patl_3876 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding
YP_004112008.1	PFAM: major facilitator superfamily MFS_1; KEGG: hha:Hhal_0334 major facilitator transporter
YP_004112009.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; Cache domain protein; PAS fold-4 domain protein; KEGG: wsu:WS1328 putative two-component sensor; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_004112010.1	KEGG: aar:Acear_1675 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_004112011.1	KEGG: ppd:Ppro_0748 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase
YP_004112012.1	PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: abu:Abu_0613 NifU-like protein
YP_004112013.1	TIGRFAM: cysteine desulfurase, NifS family; KEGG: sdl:Sdel_2154 cysteine desulfurase, NifS family; PFAM: aminotransferase class V
YP_004112014.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: nis:NIS_1316 oxidoreductase
YP_004112015.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: nis:NIS_1315 aminotransferase
YP_004112016.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; manually curated; KEGG: gme:Gmet_1430 UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase
YP_004112017.1	KEGG: ppd:Ppro_0501 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein
YP_004112018.1	KEGG: gme:Gmet_3368 general secretion pathway protein H
YP_004112019.1	KEGG: srm:SRM_00571 hypothetical protein
YP_004112020.1	KEGG: tjr:TherJR_1904 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1
YP_004112021.1	KEGG: gme:Gmet_0862 prephenate dehydratase/chorismate mutase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein
YP_004112022.1	KEGG: ddf:DEFDS_2101 histidinol-phosphate transaminase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II
YP_004112023.1	KEGG: gsu:GSU2607 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase
YP_004112024.1	PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); manually curated; KEGG: glo:Glov_2148 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase
YP_004112025.1	KEGG: eel:EUBELI_00928 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region
YP_004112026.1	TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: gsu:GSU2604 penicillin tolerance protein LytB; PFAM: LytB protein
YP_004112027.1	PFAM: RNA binding S1 domain protein; KEGG: mxa:MXAN_3793 30S ribosomal protein S1
YP_004112028.1	PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; KEGG: ddf:DEFDS_0581 flagellar hook-associated protein 2
YP_004112029.1	KEGG: dap:Dacet_1452 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS
YP_004112030.1	KEGG: toc:Toce_1586 flagellin domain protein
YP_004112032.1	KEGG: ddf:DEFDS_0428 hypothetical protein; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein
YP_004112033.1	KEGG: ddf:DEFDS_0429 anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS
YP_004112034.1	KEGG: ddf:DEFDS_0430 hypothetical protein; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein
YP_004112035.1	PFAM: MCP methyltransferase CheR-type; KEGG: gur:Gura_3139 protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type
YP_004112036.1	KEGG: yli:YALI0D02079g YALI0D02079p
YP_004112037.1	KEGG: ddf:DEFDS_0433 hypothetical protein
YP_004112038.1	KEGG: ddf:DEFDS_0434 hypothetical protein
YP_004112039.1	KEGG: tcx:Tcr_0756 hypothetical protein
YP_004112040.1	KEGG: bha:BH4051 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related
YP_004112041.1	TIGRFAM: acetylglutamate kinase; KEGG: sat:SYN_02154 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase
YP_004112042.1	TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein; KEGG: gur:Gura_0004 DNA gyrase, B subunit; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein
YP_004112043.1	PFAM: Chaperonin Cpn10; KEGG: dap:Dacet_2828 chaperonin Cpn10
YP_004112044.1	KEGG: ddf:DEFDS_0240 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1
YP_004112045.1	PFAM: protein of unknown function DUF1538; KEGG: dak:DaAHT2_1988 protein of unknown function DUF1538
YP_004112046.1	PFAM: protein of unknown function DUF1538; KEGG: dak:DaAHT2_1989 protein of unknown function DUF1538
YP_004112047.1	KEGG: dak:DaAHT2_1990 PII family protein
YP_004112048.1	KEGG: dba:Dbac_1906 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR
YP_004112049.1	KEGG: dap:Dacet_0089 NapH
YP_004112050.1	KEGG: dap:Dacet_0088 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_004112051.1	KEGG: dap:Dacet_0087 hypothetical protein
YP_004112052.1	PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence, subgroup; molydopterin dinucleotide-binding region; KEGG: ddf:DEFDS_1820 periplasmic nitrate reductase NapA
YP_004112053.1	KEGG: dap:Dacet_0085 hypothetical protein
YP_004112054.1	KEGG: dbr:Deba_2724 hypothetical protein
YP_004112055.1	KEGG: dvm:DvMF_1387 ATP synthase I
YP_004112056.1	KEGG: glo:Glov_3142 ATP synthase F0, A subunit; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit
YP_004112057.1	KEGG: dap:Dacet_0466 ATP synthase F0, C subunit; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit
YP_004112058.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: dae:Dtox_0959 2-nitropropane dioxygenase NPD
YP_004112059.1	KEGG: pmx:PERMA_0766 succinyldiaminopimelate transaminase; TIGRFAM: succinyldiaminopimelate transaminase; PFAM: aminotransferase class I and II
YP_004112060.1	KEGG: sul:SYO3AOP1_0794 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
YP_004112061.1	PFAM: transcriptional regulator domain-containing protein; KEGG: ate:Athe_1487 two component transcriptional regulator, winged helix family
YP_004112062.1	KEGG: dap:Dacet_1668 hypothetical protein
YP_004112063.1	PFAM: ferredoxin-dependent glutamate synthase; KEGG: ddf:DEFDS_2137 ferredoxin-dependent glutamate synthase subunit alpha
YP_004112064.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ddf:DEFDS_2136 ferredoxin-dependent glutamate synthase subunit beta
YP_004112065.1	KEGG: pca:Pcar_2794 chloride channel protein EriC; PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SMART: CBS domain containing protein
YP_004112066.1	KEGG: amt:Amet_3058 ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein
YP_004112067.1	SMART: Tetratricopeptide repeat; KEGG: ana:alr1799 hypothetical protein
YP_004112068.1	KEGG: hoh:Hoch_5856 radical SAM enzyme, Cfr family; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein
YP_004112069.1	manually curated; TIGRFAM: transcription elongation factor GreA; KEGG: pat:Patl_2213 transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein
YP_004112070.1	KEGG: sfv:SFV_2556 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type
YP_004112071.1	KEGG: gsu:GSU0012 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase
YP_004112072.1	TIGRFAM: ferrochelatase; KEGG: geo:Geob_1076 ferrochelatase; PFAM: ferrochelatase
YP_004112073.1	KEGG: ddf:DEFDS_1947 glucosamine--fructose-6-phosphate aminotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II
YP_004112074.1	KEGG: gbm:Gbem_2843 acetyl-CoA hydrolase/transferase; PFAM: acetyl-CoA hydrolase/transferase
YP_004112075.1	KEGG: sat:SYN_00550 rod shape-determining protein; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein
YP_004112076.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pjd:Pjdr2_2471 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004112077.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: gme:Gmet_2937 fumarylacetoacetate (FAA) hydrolase
YP_004112078.1	KEGG: dap:Dacet_2028 aconitate hydratase 1; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain-containing protein
YP_004112079.1	PFAM: cytochrome b5; KEGG: dap:Dacet_1659 cytochrome b5
YP_004112080.1	TIGRFAM: pyruvate, phosphate dikinase; KEGG: ddf:DEFDS_0235 pyruvate phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein
YP_004112081.1	PFAM: pseudouridine synthase; KEGG: gme:Gmet_0267 tRNA pseudouridine synthase C
YP_004112082.1	KEGG: mhu:Mhun_1420 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_004112083.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pap:PSPA7_3348 hypothetical protein
YP_004112084.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: dde:Dde_2559 beta-N-acetylhexosaminidase
YP_004112085.1	KEGG: hor:Hore_12210 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1
YP_004112086.1	KEGG: pca:Pcar_0400 hypothetical protein
YP_004112087.1	PFAM: peptidase M22 glycoprotease; KEGG: cbk:CLL_A0531 glycoprotease family protein
YP_004112088.1	KEGG: pca:Pcar_1294 ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase
YP_004112089.1	KEGG: ssm:Spirs_0440 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein
YP_004112090.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: sat:SYN_01637 transposase
YP_004112091.1	KEGG: ssm:Spirs_0440 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein
YP_004112092.1	TIGRFAM: MutS2 family protein; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; KEGG: bha:BH3106 recombination and DNA strand exchange inhibitor protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2
YP_004112093.1	PFAM: import inner membrane translocase subunit Tim44; KEGG: ppd:Ppro_0785 import inner membrane translocase, subunit Tim44
YP_004112094.1	TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: gem:GM21_3347 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region
YP_004112095.1	KEGG: dat:HRM2_49390 RlpA-like lipoprotein precursor; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein
YP_004112096.1	KEGG: vsa:VSAL_I2388 uracil permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease
YP_004112097.1	KEGG: gct:GC56T3_3352 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_004112098.1	PFAM: sugar isomerase (SIS); KEGG: wsu:WS0681 phosphoheptose isomerase
YP_004112099.1	PFAM: Redoxin domain protein; KEGG: tal:Thal_0395 redoxin domain protein
YP_004112100.1	PFAM: sodium/hydrogen exchanger; KEGG: pmx:PERMA_0591 hypothetical protein
YP_004112101.1	PFAM: TrkA-C domain protein; TrkA-N domain protein; KEGG: pmx:PERMA_0592 TrkA-N domain family protein
YP_004112102.1	PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: wsu:WS1853 cytochrome bd oxidase subunit I
YP_004112103.1	KEGG: abu:Abu_1088 cytochrome bd oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II
YP_004112105.1	PFAM: protein of unknown function DUF342; KEGG: aoe:Clos_1511 hypothetical protein
YP_004112106.1	PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: dap:Dacet_2879 diguanylate phosphodiesterase
YP_004112107.1	PFAM: CI repressor; Peptidase S24/S26A/S26B, conserved region; KEGG: mgm:Mmc1_3365 putative phage repressor
YP_004112108.1	KEGG: gbm:Gbem_1018 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver
YP_004112110.1	PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; KEGG: tye:THEYE_A1986 homoserine dehydrogenase (HDH): ThrA, MetL
YP_004112111.1	KEGG: rsd:TGRD_034 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_004112112.1	TIGRFAM: proposed homoserine kinase; phosphonopyruvate decarboxylase-related protein; KEGG: mgm:Mmc1_0814 phosphoglycerate mutase; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein
YP_004112113.1	KEGG: ddf:DEFDS_1178 aspartate kinase monofunctional class; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein
YP_004112114.1	KEGG: cbt:CLH_0200 hypothetical protein
YP_004112115.1	KEGG: gem:GM21_0669 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR
YP_004112116.1	KEGG: dat:HRM2_27510 TalC; TIGRFAM: transaldolase; PFAM: Transaldolase
YP_004112117.1	KEGG: ctc:CTC00097 DNA/RNA-binding protein; PFAM: single-stranded nucleic acid binding R3H domain-containing protein; SMART: single-stranded nucleic acid binding R3H domain-containing protein
YP_004112118.1	KEGG: gbm:Gbem_4059 60 kDa inner membrane insertion protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60 kDa inner membrane insertion protein
YP_004112119.1	PFAM: protein of unknown function DUF37; KEGG: bwe:BcerKBAB4_4627 hypothetical protein
YP_004112120.1	KEGG: bld:BLi04378 ribonuclease P; TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein
YP_004112121.1	KEGG: bcl:ABC4121 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34
YP_004112122.1	PFAM: phosphoesterase DHHA1; KEGG: mag:amb3955 exopolyphosphatase-like protein
YP_004112123.1	PFAM: protein of unknown function DUF77; KEGG: tye:THEYE_A1199 hypothetical protein
YP_004112124.1	KEGG: ddf:DEFDS_1552 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein
YP_004112125.1	TIGRFAM: histidyl-tRNA synthetase; KEGG: dap:Dacet_1436 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein
YP_004112126.1	KEGG: scl:sce7337 hypothetical protein
YP_004112127.1	KEGG: dak:DaAHT2_1960 hypothetical protein
YP_004112128.1	PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF59; KEGG: paa:Paes_1814 protein of unknown function DUF59
YP_004112129.1	KEGG: nde:NIDE3154 hypothetical protein
YP_004112130.1	TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: cvi:CV_3042 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase
YP_004112131.1	KEGG: mrb:Mrub_1139 domain of unknown function DUF1730
YP_004112132.1	PFAM: protein of unknown function DUF192; KEGG: rxy:Rxyl_2570 hypothetical protein
YP_004112133.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: wsu:WS1861 sensor kinase of two-component regulatory system; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein
YP_004112134.1	TIGRFAM: peptide methionine sulfoxide reductase; KEGG: rmr:Rmar_2736 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A
YP_004112135.1	KEGG: gme:Gmet_1933 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein
YP_004112136.1	KEGG: gur:Gura_3231 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase
YP_004112137.1	KEGG: bts:Btus_1504 flagellar basal body-associated protein FliL
YP_004112138.1	KEGG: wsu:WS0651 sulfate transporter sulfate transporter family protein; TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS
YP_004112139.1	KEGG: nhl:Nhal_3592 membrane-bound metal-dependent hydrolase
YP_004112140.1	KEGG: ant:Arnit_0241 putative Crp/Fnr family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding
YP_004112141.1	KEGG: dap:Dacet_2947 hypothetical protein
YP_004112142.1	KEGG: sta:STHERM_c11690 ferredoxin-2
YP_004112143.1	KEGG: aav:Aave_2643 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; SMART: chemotaxis sensory transducer
YP_004112144.1	TIGRFAM: GTP cyclohydrolase I; KEGG: rrs:RoseRS_0705 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase
YP_004112145.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; glycosyl transferase group 1; KEGG: gur:Gura_3229 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
YP_004112146.1	KEGG: bba:Bd0863 fimbrial assembly membrane protein
YP_004112147.1	SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: protein-P-II uridylyltransferase; KEGG: gme:Gmet_1426 UTP-GlnB (protein PII) uridylyltransferase, GlnD; PFAM: GlnD PII-uridylyltransferase; DNA polymerase beta domain protein region; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein
YP_004112148.1	PFAM: NAD-glutamate dehydrogenase; KEGG: rxy:Rxyl_2529 glutamate dehydrogenase (NAD)
YP_004112149.1	KEGG: ant:Arnit_0401 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_004112150.1	KEGG: shm:Shewmr7_0691 dipeptidyl-peptidase 7
YP_004112151.1	PFAM: protein of unknown function DUF115; KEGG: swo:Swol_0199 hypothetical protein
YP_004112152.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: srm:SRM_00933 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein
YP_004112153.1	PFAM: acriflavin resistance protein; KEGG: dde:Dde_2381 acriflavin resistance protein D
YP_004112154.1	KEGG: dsa:Desal_1095 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_004112155.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; KEGG: ddf:DEFDS_0018 peroxiredoxin
YP_004112156.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; GAF domain protein; PEP-utilising protein mobile region; KEGG: dap:Dacet_1401 PTSINtr with GAF domain, PtsP; SMART: GAF domain protein
YP_004112157.1	KEGG: gsu:GSU2620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein
YP_004112158.1	TIGRFAM: phosphofructokinase; KEGG: gsu:GSU1703 6-phosphofructokinase; PFAM: phosphofructokinase
YP_004112159.1	PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: ank:AnaeK_3118 glutamate dehydrogenase
YP_004112160.1	PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; KEGG: sat:SYN_02383 phosphoenolpyruvate synthase
YP_004112161.1	KEGG: sfu:Sfum_4089 beta-lactamase domain-containing protein
YP_004112162.1	TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: pmx:PERMA_1705 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase
YP_004112163.1	PFAM: Peptidase M23; KEGG: bbr:BB1398 putative peptidase
YP_004112164.1	PFAM: protein of unknown function DUF115; KEGG: swo:Swol_0199 hypothetical protein
YP_004112165.1	TIGRFAM: pseudaminic acid synthase; KEGG: dar:Daro_1248 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein
YP_004112166.1	KEGG: psa:PST_3837 spore coat polysaccharide biosynthesis protein, glycosyltransferase; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG; PFAM: GCN5-related N-acetyltransferase
YP_004112167.1	PFAM: aminotransferase class-III; KEGG: rpf:Rpic12D_0584 aminotransferase class-III
YP_004112168.1	PFAM: acylneuraminate cytidylyltransferase; KEGG: rpf:Rpic12D_0583 acylneuraminate cytidylyltransferase
YP_004112169.1	PFAM: aldo/keto reductase; KEGG: rpf:Rpic12D_0582 aldo/keto reductase
YP_004112170.1	PFAM: GCN5-related N-acetyltransferase; KEGG: lbf:LBF_1981 acetyltransferase
YP_004112171.1	KEGG: aeh:Mlg_2324 acylneuraminate cytidylyltransferase; TIGRFAM: pseudaminic acid CMP-transferase; PFAM: acylneuraminate cytidylyltransferase
YP_004112172.1	KEGG: rpf:Rpic12D_0580 polysaccharide biosynthesis protein CapD; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: polysaccharide biosynthesis protein CapD
YP_004112173.1	PFAM: hydrogenase expression/synthesis HypA; KEGG: abu:Abu_1400 hydrogenase expression/formation protein HypA
YP_004112174.1	KEGG: ant:Arnit_2665 proton-translocating NADH-quinone oxidoreductase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_004112175.1	KEGG: abu:Abu_0303 NADH-quinone oxidoreductase, M subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_004112176.1	KEGG: abu:Abu_0304 NADH-quinone oxidoreductase, L subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein
YP_004112177.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: ant:Arnit_2662 NADH-ubiquinone oxidoreductase subunit 4L
YP_004112178.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: abu:Abu_0306 NADH-quinone oxidoreductase, J subunit
YP_004112179.1	KEGG: abu:Abu_0307 NADH-quinone oxidoreductase, I subunit; manually curated; TIGRFAM: NADH-quinone oxidoreductase, chain I
YP_004112180.1	PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: ant:Arnit_2659 NADH dehydrogenase
YP_004112181.1	PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; KEGG: ant:Arnit_2658 NADH:ubiquinone oxidoreductase subunit G
YP_004112182.1	TIGRFAM: NADH-quinone oxidoreductase, F subunit; KEGG: mgm:Mmc1_3630 NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
YP_004112183.1	KEGG: lil:LA_0891 NADH dehydrogenase (ubiquinone) chain E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit
YP_004112184.1	KEGG: abu:Abu_0313 NADH-quinone oxidoreductase, C/D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa
YP_004112185.1	KEGG: abu:Abu_0313 NADH-quinone oxidoreductase, C/D subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit
YP_004112186.1	TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: ant:Arnit_2653 NADH-quinone oxidoreductase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_004112187.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: abu:Abu_0315 NADH-quinone oxidoreductase, A subunit
YP_004112188.1	KEGG: sdl:Sdel_1899 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_004112189.1	KEGG: dba:Dbac_0057 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase
YP_004112190.1	KEGG: cbr:CBG02462 C. briggsae CBR-ZYG-1 protein
YP_004112191.1	KEGG: bdu:BDU_454 DNA polymerase III delta subunit
YP_004112192.1	KEGG: gur:Gura_3149 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related
YP_004112193.1	KEGG: rmr:Rmar_0215 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM
YP_004112194.1	KEGG: pop:POPTR_846802 hypothetical protein
YP_004112195.1	TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: mgm:Mmc1_0372 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004112196.1	PFAM: Phosphoglycerate mutase; KEGG: sua:Saut_0659 putative phosphohistidine phosphatase, SixA
YP_004112197.1	KEGG: dde:Dde_2388 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease
YP_004112198.1	KEGG: ddf:DEFDS_1071 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain
YP_004112199.1	KEGG: dak:DaAHT2_0413 flavoprotein WrbA; TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase
YP_004112200.1	KEGG: dak:DaAHT2_0079 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112201.1	PFAM: protein of unknown function DUF214; KEGG: dak:DaAHT2_0080 protein of unknown function DUF214
YP_004112202.1	KEGG: dak:DaAHT2_0081 nucleic acid binding OB-fold tRNA/helicase-type
YP_004112203.1	KEGG: lma:LmjF32.1560 hypothetical protein
YP_004112204.1	KEGG: dvm:DvMF_2121 2-alkenal reductase; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein
YP_004112205.1	KEGG: slp:Slip_1246 hypothetical protein
YP_004112206.1	KEGG: gur:Gura_4189 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related
YP_004112207.1	KEGG: dap:Dacet_2801 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21
YP_004112208.1	KEGG: tra:Trad_2083 heavy metal translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase
YP_004112209.1	KEGG: rba:RB2204 ParA family chromosome partitioning ATPase
YP_004112210.1	KEGG: ank:AnaeK_1811 hypothetical protein
YP_004112211.1	KEGG: gsu:GSU2784 hypothetical protein
YP_004112212.1	KEGG: gme:Gmet_3393 prenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase
YP_004112213.1	SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; TIGRFAM: DNA ligase, NAD-dependent; KEGG: ddf:DEFDS_0530 NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif; BRCT domain protein
YP_004112214.1	PFAM: Protein of unknown function DUF2232, membrane; KEGG: gur:Gura_3676 hypothetical protein
YP_004112215.1	KEGG: gme:Gmet_1818 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase
YP_004112216.1	PFAM: ATP-binding region ATPase domain protein; KEGG: plm:Plim_2056 anti-sigma regulatory factor
YP_004112217.1	TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: gme:Gmet_1222 hemolysin A; SMART: RNA-binding S4 domain protein
YP_004112218.1	KEGG: tva:TVAG_303740 hypothetical protein
YP_004112219.1	KEGG: ypb:YPTS_2599 CRISPR-associated Csy4 family protein; TIGRFAM: CRISPR-associated protein, Csy4 family; PFAM: CRISPR-associated protein Csy4
YP_004112220.1	KEGG: dak:DaAHT2_1525 CRISPR-associated protein, Csy3 family; TIGRFAM: CRISPR-associated protein, Csy3 family; PFAM: CRISPR-associated protein Csy3
YP_004112221.1	KEGG: tau:Tola_1361 CRISPR-associated protein, Csy2 family; TIGRFAM: CRISPR-associated protein, Csy2 family; PFAM: CRISPR-associated protein Csy2
YP_004112223.1	KEGG: ssm:Spirs_0440 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein
YP_004112224.1	KEGG: tau:Tola_1360 CRISPR-associated protein, Csy1 family; TIGRFAM: CRISPR-associated protein, Csy1 family; PFAM: CRISPR-associated protein Csy1
YP_004112225.1	KEGG: ssm:Spirs_0440 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein
YP_004112226.1	manually curated; KEGG: pol:Bpro_4964 transposase
YP_004112227.1	KEGG: tkm:TK90_2447 CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48
YP_004112228.1	PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: glo:Glov_2482 DNA-directed DNA polymerase; SMART: Exonuclease
YP_004112229.1	KEGG: sun:SUN_0708 hypothetical protein
YP_004112230.1	KEGG: sdl:Sdel_2133 hypothetical protein
YP_004112231.1	KEGG: gur:Gura_3403 transcriptional regulator-like protein
YP_004112232.1	TIGRFAM: homoserine O-acetyltransferase; KEGG: ddf:DEFDS_1867 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold
YP_004112233.1	PFAM: protein of unknown function DUF752; KEGG: sun:SUN_0204 hypothetical protein
YP_004112234.1	KEGG: sua:Saut_0201 hypothetical protein
YP_004112235.1	KEGG: pca:Pcar_0356 putative two component response regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase
YP_004112236.1	TIGRFAM: diguanylate cyclase; PFAM: response regulator receiver; GGDEF domain containing protein; type IV pilus assembly PilZ; KEGG: afl:Aflv_1936 response regulator with a diguanylate cyclase output domain; SMART: response regulator receiver; GGDEF domain containing protein
YP_004112237.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_1218 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_004112238.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: hha:Hhal_1737 endonuclease/exonuclease/phosphatase
YP_004112239.1	PFAM: Domain of unknown function DUF2023; KEGG: mac:MA2700 hypothetical protein
YP_004112240.1	KEGG: gsu:GSU2785 hypothetical protein
YP_004112241.1	TIGRFAM: cysteine desulfurase DndA; KEGG: gsu:GSU2786 cysteine desulfurase; PFAM: aminotransferase class V
YP_004112242.1	KEGG: wsu:WS0691 hypothetical protein; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074
YP_004112243.1	KEGG: sdl:Sdel_1332 cysteine synthase A; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_004112244.1	PFAM: protein of unknown function UPF0118; KEGG: tgr:Tgr7_0823 protein of unknown function UPF0118
YP_004112245.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: dak:DaAHT2_2622 male sterility domain protein
YP_004112246.1	KEGG: son:SO_4652 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1
YP_004112247.1	KEGG: son:SO_4653 sulfate ABC transporter, permease protein; TIGRFAM: sulfate ABC transporter, inner membrane subunit CysT; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_004112248.1	KEGG: son:SO_4654 sulfate ABC transporter, permease protein; TIGRFAM: sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_004112249.1	TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: shw:Sputw3181_3443 sulfate ABC transporter, ATPase subunit; SMART: AAA ATPase
YP_004112250.1	TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; phosphoadenosine phosphosulfate reductase; KEGG: ant:Arnit_3089 adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase
YP_004112251.1	KEGG: mca:MCA2629 sulfate adenylyltransferase subunit 2; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase
YP_004112252.1	TIGRFAM: sulfate adenylyltransferase, large subunit; KEGG: abu:Abu_2175 bifunctional ATP sulfurylase, subunit 1/adenylyl-sulfate kinase; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein
YP_004112253.1	PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: tdn:Suden_0159 ferredoxin--nitrite reductase
YP_004112254.1	KEGG: pct:PC1_3315 gamma-glutamyltransferase
YP_004112255.1	KEGG: ssa:SSA_1949 AliA protein, putative
YP_004112256.1	KEGG: ssm:Spirs_0440 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein
YP_004112257.1	KEGG: dap:Dacet_0960 hypothetical protein
YP_004112258.1	KEGG: app:CAP2UW1_2118 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: ATP-binding region ATPase domain protein; CheB methylesterase; MCP methyltransferase CheR-type; histidine kinase A domain protein; SMART: MCP methyltransferase CheR-type; histidine kinase A domain protein; ATP-binding region ATPase domain protein
YP_004112259.1	KEGG: dba:Dbac_1906 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR
YP_004112260.1	KEGG: alv:Alvin_0488 4-hydroxybenzoate polyprenyl transferase
YP_004112261.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: avn:Avin_29660 oligopeptide ABC transporter, inner membrane permease component
YP_004112262.1	PFAM: extracellular solute-binding protein family 5; KEGG: aeh:Mlg_2274 extracellular solute-binding protein
YP_004112263.1	KEGG: sua:Saut_1066 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004112264.1	PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: gme:Gmet_0366 hypothetical protein
YP_004112265.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Hpt domain protein; KEGG: cag:Cagg_1830 response regulator receiver modulated diguanylate cyclase; SMART: GGDEF domain containing protein; response regulator receiver
YP_004112266.1	PFAM: response regulator receiver; KEGG: azl:AZL_004370 two-component response regulator
YP_004112267.1	PFAM: Peptidase S24/S26A/S26B, conserved region; CI repressor; KEGG: mgm:Mmc1_3365 putative phage repressor
YP_004112268.1	manually curated; KEGG: pol:Bpro_4964 transposase
YP_004112270.1	KEGG: tva:TVAG_062000 hypothetical protein
YP_004112271.1	KEGG: ath:AT4G12020 WRKY19; transcription factor
YP_004112272.1	KEGG: bpt:Bpet2786 putative periplasmic protein precursor
YP_004112273.1	KEGG: tau:Tola_0771 hypothetical protein
YP_004112274.1	PFAM: Methyltransferase type 11; KEGG: tsi:TSIB_0186 cyclopropane-fatty-acyl-phospholipid synthase superfamily
YP_004112275.1	KEGG: abc:ACICU_p0010 cytotoxic translational repressor of toxin-antitoxin stability system; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system
YP_004112276.1	TIGRFAM: prevent-host-death family protein; KEGG: lhk:LHK_01763 prevent-host-death protein
YP_004112277.1	PFAM: HI0933 family protein; KEGG: dat:HRM2_46770 hypothetical protein
YP_004112278.1	KEGG: gur:Gura_3123 GMP synthase; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I
YP_004112279.1	SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: ddf:DEFDS_0469 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein
YP_004112280.1	PFAM: flavodoxin/nitric oxide synthase; KEGG: wsu:WS0163 putative flavoprotein
YP_004112281.1	KEGG: noc:Noc_0305 hypothetical protein
YP_004112282.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; CheB methylesterase; MCP methyltransferase CheR-type; PAS fold-4 domain protein; PAS fold domain protein; KEGG: nis:NIS_1076 two-component sensor histidine kinase; SMART: MCP methyltransferase CheR-type; PAS domain containing protein; ATP-binding region ATPase domain protein
YP_004112283.1	KEGG: sua:Saut_0637 response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004112284.1	PFAM: protein of unknown function DUF486; KEGG: mmb:Mmol_0681 protein of unknown function DUF486
YP_004112285.1	PFAM: protein of unknown function DUF945; KEGG: maq:Maqu_3576 hypothetical protein
YP_004112286.1	KEGG: tcx:Tcr_1023 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein
YP_004112287.1	KEGG: sua:Saut_0247 selenophosphate synthase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_004112288.1	KEGG: asa:ASA_2117 hypothetical protein
YP_004112289.1	PFAM: SMC domain protein; KEGG: xom:XOO_0502 hypothetical protein
YP_004112290.1	KEGG: pfa:PFL2420w conserved Plasmodium protein
YP_004112291.1	KEGG: tjr:TherJR_0681 hypothetical protein
YP_004112292.1	KEGG: glo:Glov_2133 methionine synthase; TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region
YP_004112293.1	PFAM: flagellar FlhE family protein; KEGG: ddd:Dda3937_02663 flagellar protein FlhE
YP_004112294.1	KEGG: spu:754641 similar to dynein intermediate chain
YP_004112295.1	KEGG: lbl:LBL_0580 zinc-dependant hydrolase
YP_004112296.1	KEGG: pbr:PB2503_09804 TPR repeat protein
YP_004112297.1	KEGG: pfa:PFI1540w conserved Plasmodium protein, unknown function
YP_004112299.1	KEGG: bba:Bd2129 putative ATP-binding component of a transport system; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112300.1	PFAM: ABC-2 type transporter; KEGG: bba:Bd2128 ABC transporter integral membrane protein
YP_004112301.1	PFAM: Glutathione S-transferase domain; KEGG: tcx:Tcr_1309 glutathione S-transferase-like protein
YP_004112302.1	KEGG: shn:Shewana3_1809 hypothetical protein
YP_004112303.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: alv:Alvin_1380 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region
YP_004112304.1	KEGG: tdn:Suden_0750 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_004112305.1	manually curated; KEGG: pol:Bpro_4964 transposase
YP_004112306.1	KEGG: tdn:Suden_0749 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver
YP_004112307.1	KEGG: sde:Sde_1191 L-ectoine synthase; PFAM: Ectoine synthase
YP_004112308.1	KEGG: nhl:Nhal_2707 diaminobutyrate/2-oxoglutarate aminotransferase; TIGRFAM: diaminobutyrate/2-oxoglutarate aminotransferase; 2,4-diaminobutyrate 4-transaminase; PFAM: aminotransferase class-III
YP_004112309.1	TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; KEGG: mms:mma_3601 L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase
YP_004112310.1	KEGG: nis:NIS_0767 hypothetical protein
YP_004112311.1	KEGG: nve:NEMVE_v1g191972 hypothetical protein
YP_004112312.1	KEGG: tgo:TGME49_010330 SRS domain-containing surface antigen, putative
YP_004112313.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: ant:Arnit_2251 lipid A biosynthesis acyltransferase
YP_004112314.1	KEGG: bth:BT_2564 hypothetical protein
YP_004112315.1	PFAM: diacylglycerol kinase; KEGG: dap:Dacet_0092 diacylglycerol kinase
YP_004112316.1	KEGG: asa:ASA_0038 3-deoxy-D-manno-octulosonic-acid kinase
YP_004112317.1	PFAM: surface antigen (D15); KEGG: cts:Ctha_2120 outer membrane protein/protective antigen OMA87-like protein
YP_004112318.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sat:SYN_02192 HD-superfamily hydrolase; SMART: metal-dependent phosphohydrolase HD region
YP_004112319.1	PFAM: Putitive phosphate transport regulator; KEGG: llo:LLO_2741 hypothetical protein
YP_004112320.1	PFAM: phosphate transporter; KEGG: tgr:Tgr7_2469 phosphate transporter
YP_004112321.1	KEGG: pcu:pc1133 peptidylprolyl isomerase II (cyclophilin A); PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type
YP_004112322.1	KEGG: dol:Dole_0747 hypothetical protein
YP_004112323.1	TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: tye:THEYE_A0633 CRISPR-associated protein, Csm1 family
YP_004112324.1	KEGG: nhl:Nhal_2831 CRISPR-associated protein, Csm2 family; TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: CRISPR-associated protein TM1810 domain protein
YP_004112325.1	KEGG: tye:THEYE_A0635 CRISPR-associated RAMP protein, Csm3 family; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324
YP_004112326.1	KEGG: neu:NE0120 hypothetical protein
YP_004112327.1	KEGG: neu:NE0119 hypothetical protein; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324
YP_004112328.1	KEGG: dmo:Dmoj_GI10989 GI10989 gene product from transcript GI10989-RA
YP_004112329.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: sat:SYN_01637 transposase
YP_004112330.1	TIGRFAM: CRISPR-associated protein DxTHG motif; KEGG: hor:Hore_15090 CRISPR-associated protein, TM1812 family
YP_004112331.1	KEGG: sfu:Sfum_1351 hypothetical protein
YP_004112332.1	KEGG: tye:THEYE_A0067 hypothetical protein
YP_004112333.1	KEGG: drm:Dred_1625 CRISPR-associated Cas1 family protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48
YP_004112334.1	TIGRFAM: CRISPR-associated protein Cas2; KEGG: ava:Ava_4177 hypothetical protein
YP_004112335.1	KEGG: hha:Hhal_1277 hypothetical protein
YP_004112336.1	KEGG: ava:Ava_4177 hypothetical protein
YP_004112337.1	KEGG: wsu:WS2029 hypothetical protein
YP_004112338.1	PFAM: amidohydrolase 2; KEGG: geo:Geob_1805 amidohydrolase 2
YP_004112339.1	PFAM: ThiJ/PfpI domain-containing protein; KEGG: mms:mma_0345 ThiJ/PfpI family protein
YP_004112340.1	PFAM: Host attachment protein; KEGG: tgr:Tgr7_1283 host cell attachment-required protein
YP_004112341.1	PFAM: Methyltransferase type 11; KEGG: tra:Trad_0504 methyltransferase type 11
YP_004112342.1	KEGG: tro:trd_A0109 cysteine desulfurase, (m-Nfs1); PFAM: aminotransferase class V
YP_004112343.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; KEGG: glo:Glov_2634 diguanylate cyclase with PAS/PAC sensor; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; extracellular solute-binding protein family 3; PAS domain containing protein; Hpt domain protein
YP_004112344.1	KEGG: bbt:BBta_2732 LysR family transcriptional regulator
YP_004112345.1	TIGRFAM: phosphate acetyltransferase; KEGG: dap:Dacet_2900 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase
YP_004112346.1	KEGG: ddf:DEFDS_1816 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase
YP_004112347.1	PFAM: protein of unknown function DUF214; KEGG: sfu:Sfum_3743 LolC/E family lipoprotein releasing system, transmembrane protein
YP_004112348.1	KEGG: hap:HAPS_1662 lipoprotein-releasing system ATP-binding protein LolD; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112349.1	KEGG: ddf:DEFDS_0507 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase
YP_004112350.1	TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: emi:Emin_0420 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase
YP_004112351.1	KEGG: dal:Dalk_1126 hypothetical protein
YP_004112352.1	KEGG: dal:Dalk_1127 hypothetical protein
YP_004112353.1	KEGG: dal:Dalk_1128 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver
YP_004112354.1	KEGG: dal:Dalk_1129 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein
YP_004112355.1	KEGG: pnu:Pnuc_1523 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR
YP_004112356.1	KEGG: cbk:CLL_A0072 HD-GYP hydrolase domain containing protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_004112357.1	KEGG: clu:CLUG_04412 hypothetical protein
YP_004112358.1	PFAM: protein of unknown function DUF485; KEGG: pap:PSPA7_1890 hypothetical protein
YP_004112359.1	KEGG: wsu:WS0598 acetate permease; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter
YP_004112360.1	PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; KEGG: wsu:WS0597 hypothetical protein
YP_004112361.1	KEGG: wsu:WS0596 DNA polymerase III subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_004112362.1	KEGG: bts:Btus_1887 pyruvate carboxylase; TIGRFAM: pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; pyruvate carboxyltransferase; Conserved carboxylase region; biotin/lipoyl attachment domain-containing protein
YP_004112363.1	KEGG: gme:Gmet_1218 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_004112364.1	KEGG: glo:Glov_1559 hypothetical protein
YP_004112365.1	KEGG: dap:Dacet_1702 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004112366.1	KEGG: ssm:Spirs_2429 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004112367.1	KEGG: tjr:TherJR_1929 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE
YP_004112368.1	KEGG: ppd:Ppro_3760 hypothetical protein
YP_004112369.1	KEGG: hha:Hhal_0810 hypothetical protein
YP_004112370.1	PFAM: CHAD domain containing protein; KEGG: pvi:Cvib_0907 CHAD domain-containing protein
YP_004112371.1	TIGRFAM: lipid-A-disaccharide synthase; KEGG: sdl:Sdel_0200 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19
YP_004112372.1	KEGG: xcv:XCV3470 putative secreted protein
YP_004112373.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: zpr:ZPR_1903 guanine deaminase
YP_004112374.1	KEGG: dap:Dacet_1779 methyl-accepting chemotaxis sensory transducer
YP_004112375.1	KEGG: dak:DaAHT2_0894 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit
YP_004112376.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: dak:DaAHT2_0895 nickel-dependent hydrogenase large subunit
YP_004112377.1	TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; KEGG: dak:DaAHT2_0896 Ni/Fe-hydrogenase, b-type cytochrome subunit
YP_004112378.1	KEGG: slo:Shew_1762 hydrogenase expression/formation protein; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein
YP_004112379.1	KEGG: nam:NAMH_0578 hypothetical protein
YP_004112380.1	PFAM: periplasmic solute binding protein; KEGG: bpf:BpOF4_01400 hypothetical protein
YP_004112381.1	KEGG: plm:Plim_0679 response regulator receiver; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region
YP_004112382.1	PFAM: protein of unknown function UPF0047; KEGG: gur:Gura_2106 hypothetical protein
YP_004112383.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_0860 rubrerythrin
YP_004112384.1	PFAM: Na+/solute symporter; KEGG: hje:HacjB3_04125 sodium:solute symporter
YP_004112385.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: aar:Acear_2228 CMP/dCMP deaminase zinc-binding protein
YP_004112386.1	KEGG: kol:Kole_1456 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase
YP_004112387.1	TIGRFAM: riboflavin synthase, alpha subunit; KEGG: apa:APP7_0407 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein
YP_004112388.1	KEGG: hth:HTH_1175 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase
YP_004112389.1	TIGRFAM: pyruvate kinase; KEGG: chl:Chy400_3375 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta
YP_004112390.1	PFAM: PfkB domain protein; KEGG: cyp:PCC8801_1084 PfkB domain protein
YP_004112391.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: abu:Abu_1921 ATP-dependent Clp protease adaptor protein ClpS
YP_004112392.1	TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: drt:Dret_1366 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: AAA ATPase
YP_004112393.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; KEGG: ant:Arnit_0391 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein
YP_004112394.1	PFAM: acriflavin resistance protein; KEGG: dak:DaAHT2_2149 acriflavin resistance protein
YP_004112395.1	KEGG: dak:DaAHT2_2148 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_004112396.1	KEGG: slt:Slit_2133 hypothetical protein
YP_004112397.1	KEGG: app:CAP2UW1_1967 hypothetical protein
YP_004112398.1	PFAM: glycosyl transferase family 9; KEGG: csa:Csal_0016 glycosyl transferase family protein
YP_004112399.1	KEGG: pca:Pcar_0586 asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type
YP_004112400.1	TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; KEGG: mta:Moth_0256 excinuclease ABC subunit C; SMART: Excinuclease ABC C subunit domain protein
YP_004112401.1	PFAM: cation transporter; KEGG: sua:Saut_0053 cation transporter
YP_004112402.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sua:Saut_0052 TrkA-N domain-containing protein
YP_004112403.1	PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: brm:Bmur_1603 TPR repeat-containing protein
YP_004112404.1	KEGG: aar:Acear_0896 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase
YP_004112405.1	KEGG: glo:Glov_3502 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib
YP_004112406.1	KEGG: cel:F36G3.3 hypothetical protein
YP_004112407.1	KEGG: lbl:LBL_2563 hypothetical protein
YP_004112408.1	KEGG: dps:DP2072 hypothetical protein
YP_004112409.1	PFAM: Radical SAM domain protein; KEGG: mem:Memar_1142 radical SAM domain-containing protein
YP_004112410.1	PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: aar:Acear_0203 glycerol 3-phosphate dehydrogenase (quinone) subunit C
YP_004112411.1	KEGG: pmy:Pmen_2558 lysophospholipase; PFAM: lipolytic protein G-D-S-L family
YP_004112412.1	KEGG: psp:PSPPH_2038 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112413.1	PFAM: protein of unknown function DUF214; KEGG: psa:PST_2018 permease, putative
YP_004112414.1	KEGG: gsu:GSU1485 ribonuclease R, putative; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II
YP_004112415.1	PFAM: Extracellular solute-binding protein, family 7; KEGG: maq:Maqu_0354 TRAP dicarboxylate transporter-DctP subunit
YP_004112416.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: maq:Maqu_0353 tripartite ATP-independent periplasmic transporter DctQ
YP_004112417.1	KEGG: maq:Maqu_0352 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004112418.1	PFAM: thioesterase superfamily protein; KEGG: mhu:Mhun_2529 phenylacetic acid degradation-related protein
YP_004112419.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_2270 binding-protein-dependent transport systems inner membrane component
YP_004112420.1	KEGG: pap:PSPA7_3489 glutathione import ATP-binding protein GsiA; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_004112421.1	PFAM: nitrogen regulatory protein P-II; KEGG: dak:DaAHT2_0633 nitrogen regulatory protein P-II
YP_004112422.1	PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; KEGG: bpf:BpOF4_14920 potassium/proton antiporter
YP_004112423.1	KEGG: tkm:TK90_0993 hypothetical protein
YP_004112424.1	TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; KEGG: pmy:Pmen_1272 Holliday junction DNA helicase RuvB; SMART: AAA ATPase
YP_004112425.1	KEGG: cpu:cpfrc_01177 holliday junction resolvasome helicase subunit A; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; helix-hairpin-helix motif; RuvA domain protein
YP_004112426.1	TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: pca:Pcar_2336 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC
YP_004112427.1	PFAM: protein of unknown function DUF28; KEGG: ddf:DEFDS_1661 hypothetical protein
YP_004112428.1	KEGG: dbr:Deba_2665 hypothetical protein
YP_004112429.1	PFAM: Uroporphyrinogen III synthase HEM4; KEGG: cwo:Cwoe_5880 uroporphyrin-III C-methyltransferase
YP_004112430.1	TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: gur:Gura_1795 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ
YP_004112431.1	KEGG: cpi:Cpin_1413 metal dependent phosphohydrolase
YP_004112432.1	PFAM: pentapeptide repeat protein; KEGG: mag:amb2564 hypothetical protein
YP_004112433.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; GAF domain protein; histidine kinase A domain protein; KEGG: wsu:WS1861 sensor kinase of two-component regulatory system; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; GAF domain protein; histidine kinase A domain protein
YP_004112434.1	TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; PAS fold-3 domain protein; ATP-binding region ATPase domain protein; KEGG: dar:Daro_3006 PAS; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_004112435.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; KEGG: wsu:WS1861 sensor kinase of two-component regulatory system; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_004112436.1	KEGG: dak:DaAHT2_2100 undecaprenol kinase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA
YP_004112437.1	KEGG: aae:aq_1484 hypothetical protein
YP_004112438.1	KEGG: hth:HTH_0814 hypothetical protein
YP_004112439.1	PFAM: methyltransferase; KEGG: fnu:FN1606 3-deoxy-D-manno-octulosonic-acid transferase
YP_004112440.1	manually curated; KEGG: pmx:PERMA_0174 hypothetical protein
YP_004112441.1	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: sfu:Sfum_0533 PepF/M3 family oligoendopeptidase
YP_004112442.1	KEGG: pfs:PFLU5470 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase
YP_004112443.1	PFAM: NusB/RsmB/TIM44; KEGG: ddd:Dda3937_01957 transcription antitermination protein
YP_004112444.1	KEGG: dap:Dacet_1329 hypothetical protein
YP_004112445.1	KEGG: ptm:GSPATT00025823001 hypothetical protein
YP_004112446.1	KEGG: plm:Plim_3789 arginine decarboxylase; TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2
YP_004112447.1	KEGG: syp:SYNPCC7002_A2391 cytochrome c6
YP_004112448.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dps:DP1261 hypothetical protein
YP_004112449.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: mvu:Metvu_0615 xanthine/uracil/vitamin C permease
YP_004112450.1	KEGG: slo:Shew_0789 Mg2+ transporter protein, CorA family protein; TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein
YP_004112451.1	KEGG: sus:Acid_1810 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112452.1	KEGG: dak:DaAHT2_1944 hypothetical protein
YP_004112453.1	PFAM: formyl transferase domain protein; KEGG: ppd:Ppro_0055 methionyl-tRNA formyltransferase
YP_004112454.1	TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: gem:GM21_3863 gamma-glutamyl kinase; SMART: PUA domain containing protein
YP_004112455.1	KEGG: ddf:DEFDS_1382 glutamate-5-semialdehyde dehydrogenase; TIGRFAM: gamma-glutamyl phosphate reductase
YP_004112456.1	TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: dsy:DSY3161 nicotinic acid mononucleotide adenylyltransferase; PFAM: cytidylyltransferase
YP_004112457.1	PFAM: ferric-uptake regulator; KEGG: chy:CHY_1135 FUR family transcriptional regulator
YP_004112458.1	KEGG: ppd:Ppro_2490 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein
YP_004112459.1	manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein
YP_004112460.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bse:Bsel_0434 TRAP transporter solute receptor, TAXI family
YP_004112461.1	PFAM: Domain of unknown function DUF1850; KEGG: bpf:BpOF4_02400 hypothetical protein
YP_004112462.1	KEGG: bpf:BpOF4_02395 hypothetical protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004112463.1	TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; PAS fold domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: bse:Bsel_0432 PAS/PAC sensor signal transduction histidine kinase; SMART: extracellular solute-binding protein family 3; histidine kinase A domain protein; ATP-binding region ATPase domain protein
YP_004112464.1	KEGG: bpf:BpOF4_02410 two-component response regulator in acetoacetate metabolism; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_004112465.1	KEGG: ppd:Ppro_0384 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112466.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gur:Gura_1446 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004112467.1	KEGG: syf:Synpcc7942_2402 hypothetical protein; PFAM: Porphyromonas-type peptidyl-arginine deiminase
YP_004112468.1	manually curated; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; KEGG: vpa:VP0320 hypothetical protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004112469.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: vha:VIBHAR_02419 hypothetical protein
YP_004112470.1	KEGG: hna:Hneap_0134 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004112471.1	KEGG: swd:Swoo_0567 peptidase M48 Ste24p
YP_004112472.1	PFAM: flagellar P-ring protein; KEGG: ddf:DEFDS_2149 flagellar P-ring protein FlgI
YP_004112473.1	PFAM: flagellar L-ring protein; KEGG: ddf:DEFDS_2150 flagellar L-ring protein FlgH
YP_004112474.1	KEGG: bpy:Bphyt_1493 hypothetical protein
YP_004112475.1	TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: sat:SYN_01763 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase
YP_004112476.1	TIGRFAM: undecaprenyl diphosphate synthase; KEGG: gur:Gura_3729 undecaprenyl pyrophosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_004112477.1	KEGG: neu:NE1510 putative membrane-bound lytic murein transglycosylase A transmembrane protein; manually curated; PFAM: MltA domain protein; 3D domain-containing protein
YP_004112478.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; Na+/H+ antiporter MnhB subunit-related protein; KEGG: pmy:Pmen_1441 putative monovalent cation/H+ antiporter subunit A
YP_004112479.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: tcx:Tcr_0062 NADH-ubiquinone oxidoreductase, chain 4L
YP_004112480.1	KEGG: csa:Csal_0901 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_004112481.1	PFAM: cation antiporter; KEGG: dba:Dbac_2487 cation antiporter
YP_004112482.1	PFAM: multiple resistance and pH regulation protein F; KEGG: tcx:Tcr_0059 putative monovalent cation/H+ antiporter subunit F
YP_004112483.1	KEGG: abo:ABO_2653 putative monovalent cation/H+ antiporter subunit G; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit
YP_004112484.1	KEGG: ddf:DEFDS_1798 ATP-dependent RNA helicase DEAD/DEAH box family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein
YP_004112485.1	KEGG: gme:Gmet_1422 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_004112486.1	TIGRFAM: PAS sensor protein; PFAM: CHASE domain protein; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; KEGG: dol:Dole_3264 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_004112487.1	KEGG: dth:DICTH_0873 radical SAM domain protein; manually curated; PFAM: Radical SAM domain protein
YP_004112488.1	KEGG: ddf:DEFDS_2093 signal peptide peptidase SppA; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49
YP_004112489.1	PFAM: Aldehyde Dehydrogenase; KEGG: dap:Dacet_1625 aldehyde dehydrogenase
YP_004112490.1	KEGG: sfu:Sfum_0070 molybdenum cofactor synthesis domain-containing protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain
YP_004112491.1	KEGG: chy:CHY_0952 ExsB protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like
YP_004112492.1	PFAM: peptidase M50; KEGG: drt:Dret_0766 peptidase M50
YP_004112493.1	KEGG: thx:Thet_1472 hypothetical protein
YP_004112494.1	KEGG: sdl:Sdel_0671 protein of unknown function UPF0054
YP_004112495.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dak:DaAHT2_2119 iron-containing alcohol dehydrogenase
YP_004112496.1	PFAM: thioesterase superfamily protein; KEGG: dra:DR_0279 hypothetical protein
YP_004112497.1	PFAM: peptidase M24; creatinase; KEGG: dap:Dacet_0447 peptidase M24
YP_004112498.1	KEGG: rsh:Rsph17029_3723 DEAD/DEAH box helicase domain-containing protein
YP_004112499.1	TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: pcu:pc0892 putative formamidopyrimidine-DNA glycosidase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding
YP_004112500.1	PFAM: major facilitator superfamily MFS_1; KEGG: alv:Alvin_2880 major facilitator superfamily MFS_1
YP_004112501.1	PFAM: protein of unknown function DUF344; KEGG: ote:Oter_3178 hypothetical protein
YP_004112502.1	KEGG: gem:GM21_3712 tetratricopeptide TPR_2 repeat protein
YP_004112503.1	KEGG: tgo:TGME49_004380 hypothetical protein
YP_004112504.1	KEGG: cvi:CV_0657 hypothetical protein; PFAM: EAL domain protein; SMART: EAL domain protein
YP_004112505.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: tye:THEYE_A1388 cytosine deaminase
YP_004112506.1	TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: gsu:GSU3205 MiaB-like tRNA modifying enzyme YliG; SMART: Elongator protein 3/MiaB/NifB
YP_004112507.1	PFAM: protein of unknown function DUF502; KEGG: mmw:Mmwyl1_0363 hypothetical protein
YP_004112508.1	PFAM: peptidase C26; KEGG: tgr:Tgr7_3159 peptidase C26
YP_004112509.1	KEGG: dde:Dde_1621 hypothetical protein
YP_004112510.1	KEGG: mei:Msip34_0239 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein
YP_004112511.1	KEGG: act:ACLA_081630 hypothetical protein
YP_004112512.1	KEGG: sco:SCO0588 sensor kinase
YP_004112513.1	KEGG: sun:SUN_1261 hypothetical protein
YP_004112514.1	PFAM: peptidase M48 Ste24p; KEGG: ppg:PputGB1_1446 heat shock protein HtpX
YP_004112515.1	KEGG: ter:Tery_2785 hypothetical protein
YP_004112516.1	KEGG: cyb:CYB_2034 hypothetical protein
YP_004112517.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: syn:sll0383 cobalt transport protein CbiM
YP_004112518.1	PFAM: cobalt transport protein; KEGG: syn:sll0384 hypothetical protein
YP_004112519.1	KEGG: dak:DaAHT2_2675 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112520.1	TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: wsu:WS1328 putative two-component sensor; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_004112521.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_1083 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS domain containing protein
YP_004112522.1	KEGG: dvl:Dvul_1895 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004112523.1	KEGG: gur:Gura_2171 two component, sigma-54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_004112524.1	KEGG: dvu:DVU0449 sensor/response regulator
YP_004112525.1	KEGG: dap:Dacet_1498 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004112526.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: plm:Plim_0679 response regulator receiver
YP_004112527.1	KEGG: sbp:Sbal223_1179 response regulator receiver modulated CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein
YP_004112528.1	KEGG: pst:PSPTO_3699 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004112529.1	PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: cyh:Cyan8802_2853 tetratricopeptide TPR_2 repeat protein
YP_004112530.1	PFAM: flagellar protein FlaG protein; KEGG: ddf:DEFDS_2019 flagellar protein FlaG
YP_004112531.1	PFAM: flagellin domain protein; KEGG: dap:Dacet_0501 flagellin domain protein
YP_004112532.1	KEGG: wsu:WS1376 CheY and CheB genes (chemotaxis protein); PFAM: response regulator receiver; SMART: response regulator receiver
YP_004112533.1	KEGG: wsu:WS1077 putative two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004112534.1	KEGG: dak:DaAHT2_0926 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_004112535.1	KEGG: wsu:WS1079 hypothetical protein
YP_004112536.1	KEGG: sdl:Sdel_1989 ATP-binding region ATPase domain protein; PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein
YP_004112537.1	KEGG: sdl:Sdel_1987 ATP-binding region ATPase domain protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein
YP_004112538.1	PFAM: CheD family protein; KEGG: sdl:Sdel_1986 CheD family protein
YP_004112539.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: tdn:Suden_0978 response regulator receiver (CheY-like) modulated CheB methylesterase; SMART: response regulator receiver
YP_004112540.1	TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: drt:Dret_1858 ATP-dependent chaperone ClpB; SMART: AAA ATPase
YP_004112541.1	PFAM: protein of unknown function DUF403; KEGG: chu:CHU_3461 hypothetical protein
YP_004112542.1	PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: zpr:ZPR_2336 hypothetical protein
YP_004112543.1	KEGG: lbc:LACBIDRAFT_305189 hypothetical protein
YP_004112544.1	TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: sjp:SJA_C1-35120 dUTP pyrophosphatase; PFAM: deoxyUTP pyrophosphatase
YP_004112545.1	KEGG: ddf:DEFDS_2140 twin-arginine translocation system component TatC; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase
YP_004112546.1	KEGG: sat:SYN_00306 sec-independent protein translocase protein; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106
YP_004112547.1	KEGG: ddf:DEFDS_0987 twin-arginine translocation protein, TatA/E family; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106
YP_004112548.1	KEGG: dap:Dacet_2879 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein
YP_004112549.1	KEGG: gur:Gura_0734 acetyl-CoA acetyltransferase-like protein
YP_004112550.1	KEGG: tgr:Tgr7_0290 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase
YP_004112551.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pcu:pc0725 soluble pyridine nucleotide transhydrogenase
YP_004112552.1	KEGG: sfu:Sfum_2643 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein
YP_004112553.1	KEGG: slt:Slit_2230 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase
YP_004112554.1	KEGG: gur:Gura_1706 ATP-NAD/AcoX kinase; PFAM: ATP-NAD/AcoX kinase
YP_004112555.1	KEGG: gur:Gura_1707 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein
YP_004112556.1	TIGRFAM: tRNA pseudouridine synthase A; KEGG: gur:Gura_1048 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain
YP_004112557.1	PFAM: acriflavin resistance protein; KEGG: maq:Maqu_0305 acriflavin resistance protein
YP_004112558.1	KEGG: tgr:Tgr7_1128 efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_004112559.1	KEGG: slt:Slit_0674 transmembrane protein
YP_004112560.1	PFAM: GlpM family protein; KEGG: enc:ECL_02268 hypothetical protein
YP_004112561.1	PFAM: Silent information regulator protein Sir2; KEGG: gsu:GSU3087 Sir2 family transcriptional regulator
YP_004112562.1	PFAM: protein of unknown function DUF980; KEGG: neu:NE0619 hypothetical protein
YP_004112563.1	KEGG: nam:NAMH_0931 appr-1-p processing enzyme family protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein
YP_004112564.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: hha:Hhal_1886 aromatic hydrocarbon degradation membrane protein
YP_004112565.1	PFAM: peptidase M48 Ste24p; KEGG: hha:Hhal_1887 peptidase M48, Ste24p
YP_004112566.1	PFAM: protein of unknown function DUF1058; KEGG: hha:Hhal_1888 hypothetical protein
YP_004112567.1	KEGG: hha:Hhal_1889 putative adenylate/guanylate cyclase; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase
YP_004112568.1	KEGG: rxy:Rxyl_1608 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR
YP_004112569.1	KEGG: mgr:MGG_03919 hypothetical protein
YP_004112570.1	KEGG: ngr:NAEGRDRAFT_47031 hypothetical protein
YP_004112571.1	KEGG: gme:Gmet_0457 DegT/DnrJ/EryC1/StrS aminotransferase; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase
YP_004112572.1	PFAM: Exopolysaccharide synthesis ExoD; KEGG: caa:Caka_1421 exopolysaccharide synthesis ExoD
YP_004112573.1	KEGG: psa:PST_0126 general secretion pathway protein F; TIGRFAM: general secretion pathway protein F; PFAM: Type II secretion system F domain
YP_004112574.1	TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: gpb:HDN1F_34690 general secretion pathway protein E; SMART: AAA ATPase
YP_004112575.1	KEGG: hch:HCH_04610 type II secretory pathway, component PulD; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein
YP_004112576.1	KEGG: hch:HCH_04611 general secretion pathway protein C
YP_004112577.1	KEGG: hch:HCH_04612 hypothetical protein
YP_004112578.1	PFAM: protein of unknown function UPF0027; KEGG: dba:Dbac_1279 protein of unknown function UPF0027
YP_004112579.1	PFAM: thiamine monophosphate synthase; KEGG: hhe:HH1498 hypothetical protein
YP_004112580.1	KEGG: pop:POPTR_573538 BED finger-nbs-lrr resistance protein
YP_004112581.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: syp:SYNPCC7002_A0308 short-chain dehydrogenase/reductase
YP_004112582.1	TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: ddf:DEFDS_1418 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding
YP_004112583.1	TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: pca:Pcar_2004 phosphoribosyl pyrophosphate synthetase; PFAM: phosphoribosyltransferase
YP_004112584.1	TIGRFAM: peptidyl-tRNA hydrolase; KEGG: bbe:BBR47_01010 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase
YP_004112585.1	KEGG: gsu:GSU2637 alcohol dehydrogenase, zinc-containing; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein
YP_004112586.1	KEGG: dap:Dacet_1215 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein
YP_004112587.1	KEGG: pmx:PERMA_1016 hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein
YP_004112588.1	KEGG: tcx:Tcr_2041 hydrogenase expression/formation protein HypD; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein
YP_004112589.1	KEGG: sdl:Sdel_1097 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC)
YP_004112590.1	KEGG: slo:Shew_1759 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K
YP_004112591.1	KEGG: sun:SUN_1658 hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase
YP_004112592.1	KEGG: mja:MJ_0272 repressor protein YorfE; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_004112593.1	PFAM: protein of unknown function DUF204; KEGG: mmg:MTBMA_c03820 hypothetical protein
YP_004112594.1	KEGG: dme:Dmel_CG6835 Glutathione Synthetase; PFAM: glutathione synthase ATP-binding; glutathione synthase
YP_004112595.1	PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bpu:BPUM_1512 site-specific tyrosine recombinase XerC
YP_004112596.1	KEGG: ccb:Clocel_1271 cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112597.1	PFAM: protein of unknown function DUF214; KEGG: nde:NIDE3066 putative cell division protein FtsX
YP_004112598.1	PFAM: Peptidase M23; KEGG: dsa:Desal_1622 peptidase M23
YP_004112599.1	TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: geo:Geob_2654 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein
YP_004112600.1	PFAM: protein of unknown function DUF610 YibQ; KEGG: sfu:Sfum_3062 protein of unknown function DUF610, YibQ
YP_004112601.1	KEGG: gct:GC56T3_1192 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
YP_004112602.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: mka:MK0297 D-3-phosphoglycerate dehydrogenase
YP_004112603.1	PFAM: phosphoglucose isomerase (PGI); KEGG: fno:Fnod_0874 glucose-6-phosphate isomerase
YP_004112604.1	KEGG: ttm:Tthe_0260 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein
YP_004112605.1	KEGG: pca:Pcar_1569 coenzyme F390 synthetase; PFAM: AMP-dependent synthetase and ligase
YP_004112606.1	PFAM: amino acid-binding ACT domain protein; KEGG: glo:Glov_1859 amino acid-binding ACT domain protein
YP_004112607.1	PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: lac:LBA0959 integrase-recombinase
YP_004112608.1	PFAM: ABC-1 domain-containing protein; KEGG: glo:Glov_1388 ABC-1 domain protein
YP_004112609.1	KEGG: sun:SUN_2121 hypothetical protein
YP_004112610.1	PFAM: HI0933 family protein; KEGG: gsu:GSU1121 hypothetical protein
YP_004112611.1	KEGG: pca:Pcar_2763 hypothetical protein
YP_004112612.1	KEGG: dbr:Deba_1896 tetratricopeptide TPR_2 repeat protein
YP_004112613.1	KEGG: bfo:BRAFLDRAFT_118050 hypothetical protein
YP_004112614.1	TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: mgm:Mmc1_0819 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein
YP_004112615.1	KEGG: gsu:GSU0867 ubiquinone/menaquinone biosynthesis methyltransferase UbiE, putative; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase
YP_004112616.1	KEGG: dsa:Desal_2859 adenylate/guanylate cyclase with CHASE sensor; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase
YP_004112617.1	PFAM: Ferritin Dps family protein; KEGG: gca:Galf_2614 ferritin Dps family protein
YP_004112618.1	PFAM: protein of unknown function DUF1847; KEGG: dhd:Dhaf_4575 protein of unknown function DUF1847
YP_004112619.1	PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpi:Rpic_0750 transcriptional regulator, LysR family
YP_004112620.1	KEGG: azl:AZL_002450 MFS general substrate transporter
YP_004112621.1	KEGG: xne:XNC1_4558 putative tautomerase K2; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase
YP_004112622.1	KEGG: ddf:DEFDS_0834 two-component, sigma54 specific, transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_004112623.1	PFAM: heat shock protein Hsp20; KEGG: sfu:Sfum_1743 heat shock protein HSP20
YP_004112624.1	PFAM: heat shock protein Hsp20; KEGG: rba:RB10279 HSP20 family protein
YP_004112625.1	KEGG: maq:Maqu_3821 hypothetical protein
YP_004112626.1	PFAM: thioesterase superfamily protein; KEGG: cvi:CV_0458 hypothetical protein
YP_004112627.1	PFAM: Uncharacterised conserved protein UCP033563; KEGG: cth:Cthe_3196 hypothetical protein
YP_004112628.1	PFAM: flagellin domain protein; KEGG: dap:Dacet_0501 flagellin domain protein
YP_004112629.1	PFAM: flagellin domain protein; KEGG: dap:Dacet_0501 flagellin domain protein
YP_004112630.1	TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: pol:Bpro_2802 putative PAS/PAC sensor protein; SMART: PAS domain containing protein
YP_004112631.1	KEGG: gur:Gura_3241 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112632.1	KEGG: pmy:Pmen_3139 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004112633.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: ckr:CKR_3023 hypothetical protein
YP_004112634.1	PFAM: heat shock protein DnaJ domain protein; KEGG: mmw:Mmwyl1_4084 heat shock protein DnaJ domain-containing protein
YP_004112635.1	KEGG: llo:LLO_2507 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; PFAM: DAHP synthetase class II
YP_004112636.1	PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: gbm:Gbem_3164 nucleoside 2-deoxyribosyltransferase
YP_004112637.1	KEGG: vvu:VV2_0373 WD-40 repeat-containing protein
YP_004112638.1	KEGG: dma:DMR_17610 desulfoferrodoxin; TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein
YP_004112639.1	KEGG: ddf:DEFDS_1155 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type
YP_004112640.1	PFAM: Protein of unknown function DUF2179; KEGG: mpi:Mpet_1803 hypothetical protein
YP_004112641.1	KEGG: gme:Gmet_1353 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein
YP_004112642.1	SMART: AICARFT/IMPCHase bienzyme formylation region; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: dap:Dacet_1772 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein
YP_004112643.1	KEGG: ptm:GSPATT00010842001 hypothetical protein
YP_004112644.1	KEGG: swo:Swol_0993 restriction endonuclease-like protein
YP_004112645.1	KEGG: cci:CC1G_02226 capsular associated protein
YP_004112646.1	KEGG: cco:CCC13826_1580 putative response regulator of two-component system; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein
YP_004112647.1	KEGG: ddf:DEFDS_0423 hypothetical protein
YP_004112648.1	KEGG: dap:Dacet_2852 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004112649.1	PFAM: Heat shock protein 70; KEGG: toc:Toce_0909 chaperone protein DnaK
YP_004112650.1	KEGG: ddf:DEFDS_0421 flagellar motor switch protein FliN/FliY; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein
YP_004112651.1	KEGG: dap:Dacet_2850 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein
YP_004112652.1	KEGG: dap:Dacet_2849 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver
YP_004112653.1	KEGG: ssm:Spirs_1586 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein
YP_004112654.1	KEGG: abu:Abu_1729 methyl-accepting chemotaxis protein
YP_004112655.1	KEGG: gme:Gmet_0428 NifH/FrxC:cobyrinic acid a,c-diamide synthase
YP_004112656.1	TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: gsu:GSU3055 flagellar biosynthetic protein FlhF, putative; SMART: AAA ATPase
YP_004112657.1	KEGG: ddf:DEFDS_0414 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein
YP_004112658.1	KEGG: ddf:DEFDS_0413 flagellar biosynthetic protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter
YP_004112659.1	PFAM: type III secretion system inner membrane R protein; KEGG: tmt:Tmath_1268 flagellar biosynthetic protein FliR
YP_004112660.1	KEGG: dap:Dacet_0296 flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3
YP_004112661.1	KEGG: dal:Dalk_1007 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein
YP_004112662.1	TIGRFAM: flagellar biosynthetic protein FliO; KEGG: har:HEAR1886 putative FliO (partial)
YP_004112663.1	KEGG: brm:Bmur_1938 flagellar motor switch protein FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein
YP_004112664.1	PFAM: flagellar basal body-associated protein FliL; KEGG: ddf:DEFDS_1717 flagellar FliL protein
YP_004112665.1	PFAM: OmpA/MotB domain protein; KEGG: ddf:DEFDS_1718 flagellar motor protein MotB
YP_004112666.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: ddf:DEFDS_1719 flagellar motor protein MotA
YP_004112667.1	SMART: phospholipase D/Transphosphatidylase; KEGG: ddf:DEFDS_1842 phospholipase D/transphosphatidylase
YP_004112668.1	KEGG: gsu:GSU1003 nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_004112669.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: gsu:GSU1004 sensory box histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_004112670.1	KEGG: sat:SYN_00304 multimodular transpeptidase-transglycosylase; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase
YP_004112671.1	PFAM: type III secretion exporter; KEGG: gym:GYMC10_4210 flagellar biosynthetic protein FlhB
YP_004112672.1	TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: gem:GM21_0656 glycyl-tRNA synthetase subunit beta; PFAM: glycyl-tRNA synthetase beta subunit
YP_004112673.1	TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: ddf:DEFDS_0639 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit
YP_004112674.1	KEGG: bcr:BCAH187_A2978 putative glutathionylspermidine synthase
YP_004112675.1	KEGG: gct:GC56T3_1002 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein
YP_004112676.1	KEGG: ddf:DEFDS_1081 magnesium/cobalt efflux protein; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein
YP_004112677.1	PFAM: protein of unknown function UPF0054; KEGG: tna:CTN_0984 putative metalloprotease
YP_004112678.1	KEGG: pca:Pcar_1483 glutamate synthase, small subunit; TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004112679.1	KEGG: pca:Pcar_1482 glutamate synthase, large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein
YP_004112680.1	KEGG: dol:Dole_1539 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_004112681.1	PFAM: methyltransferase small; KEGG: vha:VIBHAR_03421 16S rRNA m2G 1207 methyltransferase
YP_004112682.1	KEGG: vha:VIBHAR_01599 hypothetical protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_004112683.1	KEGG: gur:Gura_1586 hypothetical protein
YP_004112684.1	PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: gur:Gura_1602 electron transfer flavoprotein, alpha subunit
YP_004112685.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: gur:Gura_3038 electron transfer flavoprotein beta-subunit
YP_004112686.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: geo:Geob_0246 protein of unknown function DUF224 cysteine-rich region domain protein
YP_004112687.1	PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: chy:CHY_1350 butyryl-CoA dehydrogenase
YP_004112688.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_2071 short chain enoyl-CoA hydratase
YP_004112689.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: gbm:Gbem_1461 3-hydroxyacyl-CoA dehydrogenase NAD-binding
YP_004112690.1	TIGRFAM: acetyl-CoA acetyltransferase; KEGG: gme:Gmet_2074 thiolase; PFAM: Thiolase-like
YP_004112691.1	KEGG: hla:Hlac_0513 hypothetical protein
YP_004112692.1	KEGG: ddf:DEFDS_1838 MerR family transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR
YP_004112693.1	PFAM: thioesterase superfamily protein; KEGG: ddf:DEFDS_1840 hypothetical protein
YP_004112695.1	KEGG: gur:Gura_1596 hypothetical protein
YP_004112696.1	KEGG: cvi:CV_2486 hypothetical protein
YP_004112697.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gur:Gura_1595 NADH:flavin oxidoreductase/NADH oxidase
YP_004112698.1	PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ddf:DEFDS_1465 acyl-CoA dehydrogenase
YP_004112699.1	KEGG: ddf:DEFDS_1466 3-ketoacyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase-like
YP_004112700.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; Enoyl-CoA hydratase/isomerase; KEGG: gur:Gura_1591 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
YP_004112701.1	PFAM: AMP-dependent synthetase and ligase; KEGG: gur:Gura_1590 AMP-dependent synthetase and ligase
YP_004112702.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: mei:Msip34_1172 aromatic hydrocarbon degradation membrane protein
YP_004112703.1	KEGG: cre:CHLREDRAFT_143495 voltage gated chloride channel
YP_004112704.1	KEGG: eca:ECA2863 hypothetical protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory
YP_004112705.1	PFAM: TrfA family protein; KEGG: bgl:bglu_3p0030 TrfA family protein
YP_004112706.1	KEGG: hmg:100198226 similar to Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2
YP_004112707.1	KEGG: msu:MS0113 hypothetical protein
YP_004112708.1	KEGG: ate:Athe_2435 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_004112709.1	KEGG: tal:Thal_1431 hypothetical protein
YP_004112711.1	PFAM: BRO domain protein; KEGG: dia:Dtpsy_3227 prophage antirepressor
YP_004112712.1	KEGG: lbu:LBUL_0800 3'-5' exonuclease and CRISPR-associated Cas2 family protein
YP_004112713.1	KEGG: amc:MADE_01804 hypothetical protein
YP_004112714.1	KEGG: cjr:CJE0585 hypothetical protein
YP_004112717.1	KEGG: rlg:Rleg_2314 uracil-DNA glycosylase protein
YP_004112718.1	KEGG: noc:Noc_0626 hypothetical protein
YP_004112719.1	KEGG: mlu:Mlut_04890 uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
YP_004112720.1	PFAM: domain of unknown function DUF1738; KEGG: bpf:BpOF4_21454 hypothetical protein
YP_004112721.1	KEGG: mba:Mbar_A2070 sensory transduction histidine kinase
YP_004112722.1	KEGG: mtp:Mthe_0419 hypothetical protein
YP_004112723.1	KEGG: sat:SYN_01886 DNA transfer in the process of conjugation and F pilus assembly protein
YP_004112724.1	KEGG: dwi:Dwil_GK18356 GK18356 gene product from transcript GK18356-RA
YP_004112725.1	KEGG: ppd:Ppro_0245 hypothetical protein
YP_004112726.1	KEGG: sat:SYN_01891 hypothetical protein
YP_004112727.1	KEGG: efa:EF2839 DnaD domain-containing protein
YP_004112728.1	KEGG: vcm:VCM66_A0455 hypothetical protein
YP_004112729.1	KEGG: ppd:Ppro_1012 hypothetical protein
YP_004112730.1	KEGG: pmy:Pmen_4328 hypothetical protein
YP_004112731.1	PFAM: integrase family protein; KEGG: glo:Glov_3695 hypothetical protein
YP_004112732.1	PFAM: StbA family protein; KEGG: sat:SYN_01836 MreB-like ATPase involved in cell division
YP_004112733.1	KEGG: cbr:CBG00882 C. briggsae CBR-TAG-165 protein
YP_004112734.1	KEGG: psl:Psta_1624 methionine aminopeptidase, type I
YP_004112736.1	KEGG: pst:PSPTO_2386 C-5 cytosine-specific DNA methylase family protein; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase
YP_004112737.1	KEGG: hmu:Hmuk_2114 membrane-flanked domain protein
YP_004112738.1	KEGG: pmr:PMI1943 MFS-family transporter
YP_004112739.1	KEGG: ach:Achl_3826 adenylosuccinate lyase
YP_004112740.1	KEGG: pan:PODANSg3007 hypothetical protein
YP_004112741.1	KEGG: acd:AOLE_00895 high-affinity choline transport protein
YP_004112742.1	KEGG: enc:ECL_00433 hypothetical protein
YP_004112743.1	PFAM: OmpA/MotB domain protein; KEGG: vex:VEA_000499 outer membrane protein A precursor
YP_004112744.1	PFAM: Disulphide bond isomerase, DsbC/G-like; KEGG: gsu:GSU0850 hypothetical protein
YP_004112745.1	KEGG: sjp:SJA_P1-01020 hypothetical protein
YP_004112746.1	KEGG: ppd:Ppro_0258 hypothetical protein
YP_004112747.1	KEGG: ppd:Ppro_3781 putative sex pilus assembly and synthesis protein
YP_004112748.1	KEGG: sat:SYN_01862 hypothetical protein
YP_004112749.1	KEGG: sat:SYN_01863 pilus assembly protein
YP_004112750.1	KEGG: zma:100272964 hypothetical protein LOC100272964
YP_004112752.1	KEGG: sat:SYN_01864 hypothetical protein
YP_004112753.1	KEGG: sat:SYN_01865 sex pilus assembly protein
YP_004112754.1	KEGG: sat:SYN_01866 hypothetical protein
YP_004112755.1	KEGG: sat:SYN_01867 hypothetical protein
YP_004112756.1	PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: glo:Glov_0310 type-F conjugative transfer system pilin assembly protein TrbC
YP_004112757.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sdl:Sdel_0392 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_004112758.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cvi:CV_0368 hypothetical protein; SMART: metal-dependent phosphohydrolase HD region
YP_004112759.1	KEGG: sha:SH0701 hypothetical protein
YP_004112760.1	KEGG: plm:Plim_2626 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n
YP_004112761.1	KEGG: psa:PST_2773 recombination associated protein
YP_004112762.1	KEGG: mpt:Mpe_B0372 hypothetical protein
YP_004112763.1	KEGG: sat:SYN_01872 type IV secretory protease
YP_004112764.1	KEGG: vap:Vapar_2107 DsbA oxidoreductase
YP_004112765.1	KEGG: rcu:RCOM_1339920 hypothetical protein
YP_004112766.1	KEGG: sat:SYN_01868 putative cytoplasmic protein
YP_004112767.1	PFAM: TraU family protein; KEGG: sat:SYN_01869 conjugal DNA transfer protein
YP_004112768.1	KEGG: gsu:GSU2124 thioredoxin domain-containing protein
YP_004112769.1	PFAM: TraH family protein; KEGG: sat:SYN_01874 pilus assembly protein
YP_004112770.1	KEGG: sat:SYN_01875 DNA transfer and F pilus assembly protein
YP_004112771.1	KEGG: aeh:Mlg_2654 gamma-glutamyltransferase 1
YP_004112772.1	KEGG: hap:HAPS_1462 hypothetical protein
YP_004112773.1	PFAM: BRO domain protein; KEGG: lhk:LHK_01782 phage associated-antirepressor
YP_004112774.1	KEGG: pca:Pcar_1207 putative two-component response regulator
YP_004112775.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase TnpA
YP_004112776.1	PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: slp:Slip_1825 D12 class N6 adenine-specific DNA methyltransferase
YP_004112777.1	KEGG: nve:NEMVE_v1g135950 hypothetical protein
YP_004112778.1	PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: gbm:Gbem_3678 Resolvase domain
YP_004112779.1	KEGG: cvi:CV_3905 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR
YP_004112780.1	KEGG: ppu:PP_3375 deoxyribonuclease I; PFAM: Endonuclease I
YP_004112781.1	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: pmr:PMI2484 DNA repair protein
YP_004112782.1	KEGG: shw:Sputw3181_1082 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein
YP_004112783.1	PFAM: integrase family protein; KEGG: ypy:YPK_0061 integrase family protein
YP_004112784.1	KEGG: cth:Cthe_2889 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like
YP_004112785.1	PFAM: MscS Mechanosensitive ion channel; KEGG: tgr:Tgr7_0569 MscS mechanosensitive ion channel
YP_004112786.1	KEGG: tgr:Tgr7_0568 hypothetical protein
YP_004112787.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: metal-dependent phosphohydrolase HD sub domain; Hemerythrin HHE cation binding domain protein; KEGG: dap:Dacet_2540 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region
YP_004112788.1	TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: pca:Pcar_0614 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA
YP_004112789.1	PFAM: sodium:neurotransmitter symporter; KEGG: bpf:BpOF4_11270 sodium-dependent transporter
YP_004112790.1	KEGG: pgu:PGUG_02126 hypothetical protein
YP_004112791.1	PFAM: UspA domain-containing protein; KEGG: ppd:Ppro_3112 UspA domain-containing protein
YP_004112792.1	PFAM: protein of unknown function DUF342; KEGG: sdl:Sdel_1052 protein of unknown function DUF342
YP_004112793.1	KEGG: dap:Dacet_2008 response regulator receiver protein; PFAM: response regulator receiver; Stage II sporulation protein E; SMART: response regulator receiver; protein phosphatase 2C domain protein
YP_004112794.1	KEGG: glo:Glov_2779 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase
YP_004112795.1	KEGG: dak:DaAHT2_0440 protein of unknown function DUF1058; PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein
YP_004112796.1	KEGG: cre:CHLREDRAFT_149445 serine/threonine protein kinase 18
YP_004112797.1	KEGG: ddf:DEFDS_1720 flagellar hook protein FlgE; TIGRFAM: flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein
YP_004112798.1	PFAM: flagellar hook capping protein; KEGG: tle:Tlet_1819 flagellar hook capping protein
YP_004112799.1	PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: pca:Pcar_1186 putative flagellar hook-length control protein
YP_004112800.1	KEGG: gur:Gura_0301 ribonuclease; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein
YP_004112801.1	KEGG: sfu:Sfum_1962 signal peptide peptidase SppA, 36K type; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49
YP_004112802.1	KEGG: syp:SYNPCC7002_E0031 hypothetical protein
YP_004112803.1	manually curated; TIGRFAM: thiamine biosynthesis protein ThiC; KEGG: mgm:Mmc1_3734 thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC
YP_004112804.1	KEGG: bll:BLJ_0644 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein
YP_004112805.1	PFAM: thiazole biosynthesis family protein; KEGG: pca:Pcar_0609 thiazole synthase
YP_004112806.1	KEGG: pca:Pcar_0608 thiamine biosynthesis protein ThiH; TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein
YP_004112807.1	KEGG: cag:Cagg_2619 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR
YP_004112808.1	PFAM: protein of unknown function DUF208; KEGG: ere:EUBREC_2154 ncharacterized conserved protein
YP_004112809.1	KEGG: dat:HRM2_34910 hypothetical protein
YP_004112810.1	TIGRFAM: methionine-R-sulfoxide reductase; KEGG: nwa:Nwat_2816 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B
YP_004112811.1	KEGG: wsu:WS0166 carboxynorspermidine decarboxylase (NspC); TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2
YP_004112812.1	PFAM: Saccharopine dehydrogenase; KEGG: dak:DaAHT2_0112 saccharopine dehydrogenase
YP_004112813.1	KEGG: dat:HRM2_24900 LspA; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II
YP_004112814.1	KEGG: pca:Pcar_2455 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase
YP_004112815.1	PFAM: protein of unknown function DUF445; KEGG: toc:Toce_1407 protein of unknown function DUF445
YP_004112816.1	TIGRFAM: orotate phosphoribosyltransferase; KEGG: dae:Dtox_2348 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_004112817.1	PFAM: Septum formation initiator; KEGG: tye:THEYE_A1003 septum formation initiator family protein
YP_004112818.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: gbm:Gbem_1567 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
YP_004112819.1	KEGG: ddf:DEFDS_1219 dihydroorotate oxidase; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase
YP_004112820.1	KEGG: dhd:Dhaf_3411 pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein
YP_004112821.1	TIGRFAM: TonB family protein; KEGG: hya:HY04AAS1_1114 TonB family protein
YP_004112822.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pmx:PERMA_1967 biopolymer transport protein ExbD/TolR
YP_004112823.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1436 MotA/TolQ/ExbB proton channel
YP_004112824.1	PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: rmr:Rmar_1517 outer membrane assembly lipoprotein YfiO
YP_004112825.1	KEGG: saq:Sare_1319 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24
YP_004112826.1	PFAM: protein of unknown function DUF55; KEGG: dma:DMR_05680 hypothetical protein
YP_004112827.1	PFAM: histidine triad (HIT) protein; KEGG: aha:AHA_0902 HIT family hydrolase
YP_004112828.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; KEGG: tmz:Tmz1t_2832 putative PAS/PAC sensor protein; SMART: PAS domain containing protein
YP_004112829.1	KEGG: glo:Glov_0569 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004112830.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; KEGG: dba:Dbac_1513 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_004112831.1	KEGG: glo:Glov_0569 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004112832.1	KEGG: aar:Acear_1034 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_004112833.1	KEGG: sme:SMc02708 hypothetical protein; PFAM: Glutathione S-transferase domain
YP_004112834.1	KEGG: drt:Dret_0827 hypothetical protein
YP_004112835.1	SMART: AP endonuclease family 2; TIGRFAM: apurinic endonuclease Apn1; KEGG: hha:Hhal_1668 endonuclease IV; PFAM: Xylose isomerase domain-containing protein TIM barrel
YP_004112836.1	KEGG: cla:Cla_0424 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like
YP_004112837.1	KEGG: gym:GYMC10_5779 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase
YP_004112838.1	KEGG: tet:TTHERM_00230960 Glycosyl hydrolases family 38 protein
YP_004112839.1	KEGG: hmo:HM1_1736 hypothetical protein
YP_004112840.1	KEGG: dhd:Dhaf_4394 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_004112841.1	KEGG: lel:LELG_04652 hypothetical protein
YP_004112842.1	KEGG: dap:Dacet_0501 flagellin domain protein; manually curated; PFAM: flagellin domain protein
YP_004112843.1	KEGG: toc:Toce_1460 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein
YP_004112844.1	KEGG: mhu:Mhun_2689 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_004112845.1	KEGG: ant:Arnit_0784 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; response regulator receiver; GGDEF domain containing protein; SMART: EAL domain protein; response regulator receiver; GGDEF domain containing protein
YP_004112846.1	KEGG: dap:Dacet_1740 hypothetical protein
YP_004112847.1	manually curated; KEGG: dau:Daud_1704 hypothetical protein
YP_004112848.1	PFAM: Methyltransferase type 11; KEGG: dak:DaAHT2_2132 methyltransferase type 11
YP_004112849.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: wsu:WS0422 hypothetical protein
YP_004112850.1	PFAM: UspA domain-containing protein; KEGG: cts:Ctha_0739 UspA domain protein
YP_004112851.1	PFAM: protein of unknown function DUF502; KEGG: ddf:DEFDS_1107 hypothetical protein
YP_004112852.1	KEGG: dap:Dacet_2969 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase
YP_004112853.1	KEGG: hya:HY04AAS1_0716 hypothetical protein
YP_004112854.1	KEGG: gsu:GSU1588 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein
YP_004112855.1	PFAM: protein of unknown function DUF448; ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: gem:GM21_2982 protein of unknown function DUF448
YP_004112856.1	KEGG: rce:RC1_2910 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein
YP_004112857.1	PFAM: protein of unknown function DUF150; KEGG: hth:HTH_0021 hypothetical protein
YP_004112858.1	KEGG: sat:SYN_00190 tol system periplasmic component
YP_004112859.1	KEGG: glo:Glov_3469 peptidoglycan-associated lipoprotein; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein
YP_004112860.1	KEGG: pca:Pcar_2975 TolB protein
YP_004112861.1	KEGG: xau:Xaut_2278 TonB family protein
YP_004112862.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xau:Xaut_3058 biopolymer transport TolR
YP_004112863.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: kko:Kkor_1851 protein TolQ
YP_004112864.1	KEGG: sca:Sca_2197 preprotein translocase subunit SecA
YP_004112865.1	PFAM: peptidase M24; creatinase; KEGG: chy:CHY_1873 aminopeptidase P
YP_004112866.1	KEGG: nth:Nther_1717 translation elongation factor P (EF-P); TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein
YP_004112867.1	KEGG: hmo:HM1_0282 pyruvate carboxylase subunit B; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein
YP_004112868.1	KEGG: dhd:Dhaf_3507 acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein
YP_004112869.1	KEGG: maq:Maqu_2483 hypothetical protein
YP_004112870.1	KEGG: aav:Aave_1879 OmpA domain-containing protein
YP_004112871.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bpd:BURPS668_A2861 serine metalloprotease
YP_004112872.1	KEGG: tgr:Tgr7_0228 hypothetical protein
YP_004112873.1	KEGG: bse:Bsel_0662 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region
YP_004112874.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ngk:NGK_1402 long-chain-fatty-acid--CoA ligase
YP_004112875.1	KEGG: gem:GM21_2194 response regulator receiver sensor signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein
YP_004112876.1	KEGG: dak:DaAHT2_1251 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE
YP_004112877.1	KEGG: rsk:RSKD131_1555 methyl-accepting chemotaxis sensory transducer
YP_004112878.1	PFAM: Bile acid:sodium symporter; KEGG: maq:Maqu_3276 bile acid:sodium symporter
YP_004112879.1	KEGG: toc:Toce_2280 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related
YP_004112880.1	SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: gur:Gura_0005 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller
YP_004112881.1	TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS IV domain protein; KEGG: mxa:MXAN_3897 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein
YP_004112882.1	KEGG: sdl:Sdel_1993 response regulator receiver; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004112883.1	KEGG: sdl:Sdel_1992 CheW domain protein; PFAM: CheW domain protein; SMART: CheW domain protein
YP_004112884.1	KEGG: wsu:WS0094 methyl-accepting chemotaxis protein II; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_004112885.1	KEGG: wsu:WS1079 hypothetical protein
YP_004112886.1	KEGG: sdl:Sdel_1989 ATP-binding region ATPase domain protein; PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein
YP_004112887.1	PFAM: MCP methyltransferase CheR-type; KEGG: tdn:Suden_0975 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type
YP_004112888.1	KEGG: sdl:Sdel_1987 ATP-binding region ATPase domain protein; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_004112889.1	TIGRFAM: cysteinyl-tRNA synthetase; KEGG: ddf:DEFDS_0838 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR
YP_004112890.1	PFAM: aminodeoxychorismate lyase; KEGG: pla:Plav_3356 aminodeoxychorismate lyase
YP_004112891.1	KEGG: mmi:MMAR_0466 long-chain-fatty-acid-CoA ligase
YP_004112892.1	PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: dak:DaAHT2_1554 TonB-dependent receptor plug
YP_004112893.1	PFAM: periplasmic binding protein; KEGG: toc:Toce_1426 periplasmic binding protein
YP_004112894.1	PFAM: transport system permease protein; KEGG: tgr:Tgr7_1577 transport system permease protein
YP_004112895.1	KEGG: afw:Anae109_3576 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112896.1	KEGG: dia:Dtpsy_1442 TonB family protein; TIGRFAM: TonB family protein; PFAM: TonB domain
YP_004112897.1	KEGG: bvi:Bcep1808_5396 hypothetical protein
YP_004112898.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: app:CAP2UW1_2349 hypothetical protein
YP_004112899.1	KEGG: dps:DP2965 hypothetical protein
YP_004112900.1	KEGG: chy:CHY_2227 phosphotransferase domain-containing protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein
YP_004112901.1	KEGG: pmu:PM0566 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV
YP_004112902.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: dap:Dacet_1843 diguanylate cyclase; SMART: GGDEF domain containing protein; response regulator receiver
YP_004112903.1	TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: sat:SYN_00797 tRNA 2-methylthioadenosine synthase -like protein; SMART: Elongator protein 3/MiaB/NifB
YP_004112904.1	KEGG: ddf:DEFDS_0104 hypothetical protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein
YP_004112905.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: ddf:DEFDS_0105 outer membrane protein OmpH
YP_004112906.1	KEGG: afw:Anae109_1122 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein
YP_004112907.1	KEGG: avn:Avin_38880 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
YP_004112908.1	TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: spe:Spro_3778 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein
YP_004112909.1	PFAM: protein of unknown function DUF1009; KEGG: dak:DaAHT2_0858 protein of unknown function DUF1009
YP_004112910.1	PFAM: Exonuclease VII small subunit; KEGG: mmw:Mmwyl1_1147 exodeoxyribonuclease VII small subunit
YP_004112911.1	PFAM: Polyprenyl synthetase; KEGG: hmo:HM1_0293 geranylgeranyl pyrophosphate synthase
YP_004112912.1	KEGG: gur:Gura_2175 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain-containing protein
YP_004112913.1	KEGG: cph:Cpha266_0370 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A
YP_004112914.1	PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: geo:Geob_2694 phosphoesterase RecJ domain protein
YP_004112915.1	KEGG: hau:Haur_0479 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein
YP_004112916.1	KEGG: mif:Metin_1069 chromosome segregation protein SMC
YP_004112917.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: gem:GM21_1819 oxidoreductase FAD/NAD(P)-binding domain protein
YP_004112918.1	KEGG: rrs:RoseRS_1116 CaCA family Na(+)/Ca(+) antiporter; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region
YP_004112919.1	KEGG: geo:Geob_3486 hypothetical protein
YP_004112920.1	SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; DNA-directed DNA polymerase; TIGRFAM: DNA polymerase I; KEGG: dal:Dalk_2747 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease
YP_004112921.1	PFAM: Chorismate binding-like; KEGG: aat:D11S_0980 para-aminobenzoate synthase component I
YP_004112922.1	KEGG: sun:SUN_0387 hypothetical protein
YP_004112923.1	KEGG: tgo:TGME49_010330 SRS domain-containing surface antigen, putative
YP_004112924.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smf:Smon_0709 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004112925.1	KEGG: dda:Dd703_1321 phosphonate ABC transporter, inner membrane subunit
YP_004112926.1	KEGG: sfu:Sfum_3174 hypothetical protein
YP_004112927.1	KEGG: gct:GC56T3_0050 MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase
YP_004112928.1	KEGG: toc:Toce_1016 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_004112929.1	TIGRFAM: aspartate carbamoyltransferase; KEGG: geo:Geob_3264 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region
YP_004112930.1	SMART: HhH-GPD family protein; TIGRFAM: endonuclease III; KEGG: tjr:TherJR_2368 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop
YP_004112931.1	KEGG: ank:AnaeK_2817 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20
YP_004112932.1	PFAM: ferric-uptake regulator; KEGG: bbe:BBR47_01310 zinc-specific metalloregulatory protein
YP_004112933.1	PFAM: ABC-3 protein; KEGG: gtn:GTNG_2407 high-affinity zinc uptake system membrane protein ZnuB
YP_004112934.1	KEGG: hmo:HM1_2421 abc transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004112935.1	KEGG: ote:Oter_3368 anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein
YP_004112936.1	KEGG: mpt:Mpe_A3462 anthranilate synthase, component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I
YP_004112937.1	PFAM: ATP-binding region ATPase domain protein; KEGG: drm:Dred_2970 histidine kinase
YP_004112938.1	TIGRFAM: 2-dehydropantoate 2-reductase; KEGG: mgm:Mmc1_0552 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein
YP_004112939.1	PFAM: aminotransferase class I and II; KEGG: ttu:TERTU_0964 histidinol-phosphate transaminase
YP_004112940.1	PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: glo:Glov_2275 cytochrome c biogenesis protein transmembrane region
YP_004112941.1	TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; KEGG: tgr:Tgr7_2000 magnesium transporter; SMART: CBS domain containing protein
YP_004112942.1	KEGG: gsu:GSU2370 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: carboxyl transferase
YP_004112943.1	KEGG: cac:CA_C1539 gamma-glutamylcysteine synthetase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase
YP_004112944.1	PFAM: glutaredoxin; KEGG: bph:Bphy_5356 glutaredoxin 3
YP_004112945.1	KEGG: glo:Glov_0385 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_004112946.1	PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: nwa:Nwat_1021 peptidase M16C associated domain-containing protein
YP_004112947.1	KEGG: dma:DMR_22590 hypothetical protein
YP_004112948.1	PFAM: RimK domain protein ATP-grasp; KEGG: dak:DaAHT2_0311 protein of unknown function DUF201
YP_004112949.1	PFAM: glutamate--cysteine ligase GCS2; KEGG: hoh:Hoch_5783 glutamate--cysteine ligase GCS2
YP_004112950.1	PFAM: N-formylglutamate amidohydrolase; KEGG: tbd:Tbd_1455 N-formylglutamate amidohydrolase
YP_004112951.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: noc:Noc_1992 secretion protein HlyD
YP_004112952.1	PFAM: acriflavin resistance protein; KEGG: dbr:Deba_2993 acriflavin resistance protein
YP_004112953.1	KEGG: mxa:MXAN_4967 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase
YP_004112954.1	KEGG: alv:Alvin_2062 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_004112955.1	KEGG: drt:Dret_0608 hypothetical protein
YP_004112956.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rmr:Rmar_2034 short-chain dehydrogenase/reductase SDR
YP_004112957.1	KEGG: dak:DaAHT2_0494 hypothetical protein
YP_004112958.1	PFAM: protein of unknown function DUF306 Meta and HslJ; Protein of unknown function DUF2091, periplasmic; KEGG: tmz:Tmz1t_3920 protein of unknown function DUF306 MetA and HslJ
YP_004112959.1	KEGG: aeh:Mlg_2430 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_004112960.1	KEGG: pnu:Pnuc_1523 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR
YP_004112961.1	PFAM: Lytic transglycosylase catalytic; extracellular solute-binding protein family 3; KEGG: tgr:Tgr7_0497 putative transglycosylase
YP_004112962.1	TIGRFAM: diguanylate cyclase; PFAM: response regulator receiver; GGDEF domain containing protein; KEGG: afl:Aflv_1936 response regulator with a diguanylate cyclase output domain; SMART: response regulator receiver; GGDEF domain containing protein
YP_004112963.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_2121 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_004112964.1	PFAM: CheD family protein; KEGG: gur:Gura_2983 CheD, stimulates methylation of MCP protein
YP_004112965.1	TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: cno:NT01CX_2077 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
YP_004112966.1	KEGG: dap:Dacet_0164 sirohydrochlorin cobaltochelatase; PFAM: anaerobic cobalt chelatase
YP_004112967.1	KEGG: dap:Dacet_0170 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_004112968.1	PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: dol:Dole_1228 cob(I)alamin adenosyltransferase
YP_004112969.1	PFAM: aminotransferase class I and II; KEGG: dap:Dacet_0150 aminotransferase class I and II
YP_004112970.1	KEGG: dap:Dacet_0151 cobalamin biosynthesis protein CobD; TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB
YP_004112971.1	KEGG: dap:Dacet_0153 precorrin-2 C20-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_004112972.1	KEGG: dap:Dacet_0154 cobyric acid synthase CobQ; TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase
YP_004112973.1	TIGRFAM: siroheme synthase; KEGG: dap:Dacet_0155 siroheme synthase
YP_004112974.1	KEGG: dap:Dacet_0156 cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase
YP_004112975.1	KEGG: dap:Dacet_0157 precorrin-8X methylmutase; PFAM: Precorrin-8X methylmutase CbiC/CobH
YP_004112976.1	PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: dap:Dacet_0158 precorrin-6x reductase CbiJ/CobK
YP_004112977.1	TIGRFAM: precorrin-3B C17-methyltransferase; KEGG: dap:Dacet_0159 precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_004112978.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dap:Dacet_0160 cobalamin (vitamin B12) biosynthesis CbiG protein
YP_004112979.1	TIGRFAM: precorrin-4 C11-methyltransferase; KEGG: dap:Dacet_0161 precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_004112980.1	KEGG: dap:Dacet_0162 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_004112981.1	KEGG: dap:Dacet_0163 cobalamin biosynthesis protein CbiD; TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein
YP_004112982.1	KEGG: gsu:GSU1374 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004112983.1	PFAM: Integrase catalytic region; KEGG: mgm:Mmc1_1295 hypothetical protein
YP_004112984.1	KEGG: dde:Dde_2492 AAA family ATPase
YP_004112985.1	KEGG: dde:Dde_2493 DEAD/DEAH box helicase-like; PFAM: type III restriction protein res subunit; DNA primase small subunit; SMART: DEAD-like helicase
YP_004112986.1	PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: pvi:Cvib_0084 hypothetical protein
YP_004112987.1	PFAM: protein of unknown function DUF262; KEGG: pvi:Cvib_0085 hypothetical protein
YP_004112988.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: sfu:Sfum_3863 filamentation induced by cAMP protein Fic
YP_004112989.1	KEGG: dol:Dole_2728 hypothetical protein
YP_004112990.1	KEGG: dol:Dole_2727 ABC transporter
YP_004112991.1	PFAM: restriction modification system DNA specificity domain; KEGG: neu:NE2496 restriction modification system, type I
YP_004112992.1	PFAM: N-6 DNA methylase; KEGG: dol:Dole_2725 N-6 DNA methylase
YP_004112993.1	PFAM: KilA, N-terminal/APSES-type HTH, DNA-binding; KEGG: gur:Gura_3302 hypothetical protein
YP_004112995.1	PFAM: type III restriction protein res subunit; protein of unknown function DUF450; KEGG: dol:Dole_2724 type III restriction protein res subunit; SMART: DEAD-like helicase
YP_004112996.1	KEGG: dde:Dde_2500 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_004112997.1	KEGG: dde:Dde_2501 hypothetical protein
YP_004112998.1	KEGG: ddf:DEFDS_1882 SsrA RNA (tmRNA)-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein
YP_004112999.1	KEGG: dsa:Desal_3185 hypothetical protein
YP_004113000.1	PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: geo:Geob_0564 xylose isomerase domain protein TIM barrel
YP_004113001.1	KEGG: ppl:POSPLDRAFT_95523 hypothetical protein
YP_004113002.1	KEGG: aha:AHA_3206 glycerophosphoryl diester phosphodiesterase family protein
YP_004113003.1	KEGG: wsu:WS0094 methyl-accepting chemotaxis protein II; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_004113004.1	KEGG: msl:Msil_0486 diguanylate cyclase
YP_004113005.1	KEGG: tye:THEYE_A0746 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_004113006.1	KEGG: tdn:Suden_0749 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver
YP_004113007.1	KEGG: glo:Glov_0569 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004113008.1	TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; KEGG: dak:DaAHT2_0681 PAS/PAC sensor signal transduction histidine kinase; SMART: PAC repeat-containing protein
YP_004113009.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: wsu:WS1328 putative two-component sensor; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_004113010.1	KEGG: glo:Glov_3443 ABC transporter, substrate-binding protein, putative
YP_004113011.1	TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; KEGG: glo:Glov_3442 diguanylate cyclase with PAS/PAC sensor; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein
YP_004113012.1	KEGG: alv:Alvin_1380 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_004113013.1	TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: tra:Trad_2800 Mg chelatase, subunit ChlI; SMART: AAA ATPase
YP_004113014.1	PFAM: NUDIX hydrolase; KEGG: sto:ST2243 MutT family protein
YP_004113015.1	KEGG: dap:Dacet_1802 citrate (Si)-synthase; PFAM: Citrate synthase
YP_004113016.1	PFAM: heat shock protein Hsp20; KEGG: dap:Dacet_1707 heat shock protein HSP20
YP_004113017.1	KEGG: geo:Geob_0898 purine or other phosphorylase family 1; TIGRFAM: futalosine nucleosidase; PFAM: purine or other phosphorylase family 1
YP_004113018.1	KEGG: afw:Anae109_1615 hypothetical protein
YP_004113019.1	KEGG: ere:EUBREC_1448 putative tRNA/rRNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding
YP_004113020.1	PFAM: O-methyltransferase family 3; KEGG: cce:Ccel_1473 O-methyltransferase family 3
YP_004113021.1	KEGG: ddf:DEFDS_1924 DNA-directed RNA polymerase sigma 70 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein
YP_004113022.1	PFAM: peptidase membrane zinc metallopeptidase; KEGG: tgr:Tgr7_3069 peptidase, membrane zinc metallopeptidase, putative
YP_004113023.1	KEGG: ddf:DEFDS_0829 ferritin; PFAM: Ferritin Dps family protein
YP_004113024.1	KEGG: swd:Swoo_0347 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_004113025.1	TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: gem:GM21_0167 primosomal protein N'; SMART: DEAD-like helicase ; helicase domain protein
YP_004113026.1	PFAM: nitroreductase; KEGG: cth:Cthe_0579 nitroreductase
YP_004113027.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: EAL domain protein; PAS fold domain protein; GGDEF domain containing protein; KEGG: dbr:Deba_0792 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein
YP_004113028.1	KEGG: dar:Daro_1297 hypothetical protein
YP_004113029.1	KEGG: hmu:Hmuk_2797 cytochrome c oxidase, subunit II
YP_004113030.1	KEGG: pde:Pden_3837 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein
YP_004113031.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; KEGG: wsu:WS0016 putative two-component sensor; SMART: ATP-binding region ATPase domain protein
YP_004113032.1	PFAM: Silent information regulator protein Sir2; KEGG: gpb:HDN1F_12980 NAD-dependent deacetylase 2
YP_004113033.1	TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: eel:EUBELI_00380 O-sialoglycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease
YP_004113034.1	PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: ddf:DEFDS_1408 fructose-bisphosphatase
YP_004113035.1	KEGG: bpf:BpOF4_10105 TraB family protein; TIGRFAM: TraB family protein; PFAM: TraB determinant protein
YP_004113036.1	KEGG: drt:Dret_0851 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region
YP_004113037.1	PFAM: Redoxin domain protein; KEGG: cts:Ctha_2551 redoxin domain protein
YP_004113038.1	manually curated; TIGRFAM: ribosomal protein L28; KEGG: afw:Anae109_2515 50S ribosomal protein L28; PFAM: ribosomal protein L28
YP_004113039.1	KEGG: mem:Memar_0061 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC
YP_004113040.1	KEGG: dap:Dacet_1935 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_004113041.1	PFAM: FeoA family protein; KEGG: dba:Dbac_1621 FeoA family protein
YP_004113042.1	KEGG: dvm:DvMF_1015 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain-containing protein; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein
YP_004113043.1	KEGG: gur:Gura_3733 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2
YP_004113044.1	KEGG: dap:Dacet_2531 translation elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein
YP_004113045.1	KEGG: geo:Geob_1520 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase
YP_004113046.1	KEGG: ddf:DEFDS_0120 ribosome recycling factor Frr; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor
YP_004113047.1	PFAM: phosphatidate cytidylyltransferase; KEGG: aca:ACP_1613 phosphatidate cytidylyltransferase
YP_004113048.1	TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: glo:Glov_2714 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein
YP_004113049.1	TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: ddf:DEFDS_0124 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF domain protein
YP_004113050.1	KEGG: sfu:Sfum_3992 response regulator receiver/unknown domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004113051.1	KEGG: sfu:Sfum_3991 signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein
YP_004113052.1	KEGG: dap:Dacet_1449 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein
YP_004113053.1	SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: gur:Gura_4295 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein
YP_004113054.1	KEGG: aae:aq_344 ADP-L-glycero-D-manno-heptose-6-epimerase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_004113055.1	KEGG: pin:Ping_2171 molybdopterin-guanine dinucleotide biosynthesis protein A
YP_004113056.1	KEGG: lrl:LC705_01850 MFS superfamily di/tripeptide transporter
YP_004113057.1	KEGG: noc:Noc_0984 hypothetical protein
YP_004113058.1	KEGG: dak:DaAHT2_0040 hypothetical protein
YP_004113059.1	PFAM: permease; KEGG: ant:Arnit_1822 permease
YP_004113060.1	PFAM: Ppx/GppA phosphatase; KEGG: gur:Gura_2137 Ppx/GppA phosphatase
YP_004113061.1	KEGG: mxa:MXAN_3783 hexapaptide repeat-containing transferase
YP_004113062.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: nde:NIDE3712 FtsH protease activity modulator HflC; SMART: band 7 protein
YP_004113063.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: dde:Dde_2946 HflK protein; SMART: band 7 protein
YP_004113064.1	PFAM: NUDIX hydrolase; KEGG: ade:Adeh_0158 NUDIX hydrolase
YP_004113065.1	KEGG: bha:BH2750 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein); TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7
YP_004113066.1	KEGG: aar:Acear_1035 two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver
YP_004113067.1	PFAM: MscS Mechanosensitive ion channel; KEGG: dsa:Desal_0259 MscS mechanosensitive ion channel
YP_004113068.1	TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: slp:Slip_0598 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase
YP_004113069.1	KEGG: pla:Plav_2588 phosphoribosylformylglycinamidine synthase, PurS; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS
YP_004113070.1	TIGRFAM: phosphoribosylformylglycinamidine synthase I; KEGG: sus:Acid_5943 phosphoribosylformylglycinamidine synthase subunit I; PFAM: CobB/CobQ domain protein glutamine amidotransferase
YP_004113071.1	TIGRFAM: phosphoribosylformylglycinamidine synthase II; KEGG: dap:Dacet_1986 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein
YP_004113072.1	PFAM: cobalamin B12-binding domain protein; KEGG: mhu:Mhun_2639 cobalamin B12-binding
YP_004113073.1	KEGG: mhu:Mhun_2640 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_004113074.1	KEGG: dde:Dde_3085 hypothetical protein
YP_004113075.1	KEGG: wsu:WS1376 CheY and CheB genes (chemotaxis protein); PFAM: response regulator receiver; SMART: response regulator receiver
YP_004113076.1	KEGG: dak:DaAHT2_0207 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein
YP_004113077.1	SMART: PKD domain containing protein; KEGG: cja:CJA_2678 putative lipoprotein
YP_004113078.1	PFAM: transposase IS4 family protein; KEGG: mba:Mbar_A1346 transposase
YP_004113079.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: cja:CJA_2679 HasR
YP_004113080.1	KEGG: xau:Xaut_2777 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein
YP_004113081.1	PFAM: FecR protein; KEGG: pfs:PFLU5799 putative iron acquisition-related protein
YP_004113082.1	PFAM: protein of unknown function DUF218; KEGG: swd:Swoo_1816 hypothetical protein
YP_004113083.1	KEGG: bpf:BpOF4_04080 multidrug resistance protein
YP_004113084.1	KEGG: hch:HCH_04142 chemotaxis protein histidine kinase-like kinase; PFAM: Hpt domain protein; SMART: Hpt domain protein
YP_004113085.1	KEGG: bfo:BRAFLDRAFT_117561 hypothetical protein
YP_004113086.1	KEGG: caa:Caka_1531 hypothetical protein
YP_004113087.1	KEGG: dak:DaAHT2_1869 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; SMART: EAL domain protein
YP_004113088.1	KEGG: dap:Dacet_0996 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004113089.1	PFAM: ATP-binding region ATPase domain protein; KEGG: aeh:Mlg_2430 histidine kinase
YP_004113090.1	PFAM: protein of unknown function DUF1504; KEGG: caa:Caka_1379 protein of unknown function DUF1504
YP_004113091.1	TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: dak:DaAHT2_0349 alpha-L-glutamate ligase-like protein
YP_004113092.1	KEGG: dak:DaAHT2_0348 hypothetical protein
YP_004113093.1	PFAM: protein of unknown function DUF785; KEGG: dak:DaAHT2_0347 protein of unknown function DUF785
YP_004113094.1	TIGRFAM: Polyphosphate kinase; KEGG: mmh:Mmah_0749 polyphosphate kinase; PFAM: Polyphosphate kinase
YP_004113095.1	PFAM: Ppx/GppA phosphatase; KEGG: mgm:Mmc1_0350 Ppx/GppA phosphatase
YP_004113096.1	PFAM: regulatory protein TetR; KEGG: reu:Reut_A0410 TetR family transcriptional regulator
YP_004113097.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: mgm:Mmc1_3187 RND family efflux transporter MFP subunit
YP_004113098.1	PFAM: acriflavin resistance protein; KEGG: aeh:Mlg_1057 acriflavin resistance protein
YP_004113099.1	KEGG: gca:Galf_1512 phenazine biosynthesis protein PhzF family; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein
YP_004113100.1	KEGG: toc:Toce_1218 competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain
YP_004113101.1	PFAM: phosphatidylglycerophosphatase A; KEGG: nhl:Nhal_2449 phosphatidylglycerophosphatase
YP_004113102.1	PFAM: protein of unknown function DUF374; KEGG: ant:Arnit_2825 hypothetical protein
YP_004113103.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dma:DMR_31700 putative flagellar basal-body rod protein
YP_004113104.1	TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dap:Dacet_2380 outer membrane assembly lipoprotein YfiO
YP_004113105.1	PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: gsu:GSU0006 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
YP_004113106.1	PFAM: protein of unknown function UPF0227; KEGG: cyb:CYB_2093 hypothetical protein
YP_004113107.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase HD sub domain; KEGG: gsu:GSU2285 HD domain-containing protein; SMART: metal-dependent phosphohydrolase HD region
YP_004113108.1	PFAM: PhoH family protein; KEGG: sit:TM1040_0188 PhoH-like protein
YP_004113109.1	KEGG: glo:Glov_3192 glutamyl-tRNA(Gln) amidotransferase, C subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit
YP_004113110.1	KEGG: ddf:DEFDS_1951 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase
YP_004113111.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold domain protein; ATP-binding region ATPase domain protein; KEGG: gca:Galf_0762 multi-sensor hybrid histidine kinase; SMART: response regulator receiver; PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein
YP_004113112.1	PFAM: NikR nickel binding; KEGG: cli:Clim_2003 putative transcriptional regulator, CopG family
YP_004113113.1	PFAM: permease YjgP/YjgQ family protein; KEGG: gme:Gmet_1248 permease YjgP/YjgQ
YP_004113114.1	PFAM: permease YjgP/YjgQ family protein; KEGG: mgm:Mmc1_2677 permease YjgP/YjgQ family protein
YP_004113115.1	TIGRFAM: chorismate synthase; KEGG: gme:Gmet_0976 chorismate synthase; PFAM: chorismate synthase
YP_004113116.1	KEGG: tye:THEYE_A0154 shikimate kinase; PFAM: shikimate kinase
YP_004113117.1	TIGRFAM: 3-dehydroquinate synthase; KEGG: gme:Gmet_0978 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase
YP_004113118.1	KEGG: dap:Dacet_0061 TPR repeat-containing protein
YP_004113119.1	TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: rsc:RCFBP_10676 3-dehydroquinate dehydratase (type II DHQase 3); PFAM: dehydroquinase class II
YP_004113120.1	PFAM: Radical SAM domain protein; KEGG: ddf:DEFDS_0011 hypothetical protein
YP_004113121.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pgn:PGN_2077 hypothetical protein
YP_004113122.1	KEGG: gur:Gura_3382 radical SAM domain-containing protein
YP_004113123.1	KEGG: gme:Gmet_0125 hypothetical protein
YP_004113124.1	PFAM: UspA domain-containing protein; KEGG: rmr:Rmar_1007 UspA domain protein
YP_004113125.1	KEGG: sfu:Sfum_1918 hypothetical protein; PFAM: GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein
YP_004113126.1	manually curated; TIGRFAM: chromosome segregation protein SMC; KEGG: glo:Glov_3494 chromosome segregation protein SMC; PFAM: SMC domain protein; Protein of unknown function DUF827, plant
YP_004113127.1	TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: ddf:DEFDS_0830 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA
YP_004113128.1	KEGG: dap:Dacet_2910 porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase
YP_004113129.1	KEGG: dap:Dacet_2031 inorganic diphosphatase; PFAM: CBS domain containing protein
YP_004113130.1	PFAM: GCN5-related N-acetyltransferase; KEGG: sfu:Sfum_0988 GCN5-related N-acetyltransferase
YP_004113131.1	KEGG: rcu:RCOM_1601620 calcium ion binding protein, putative
YP_004113132.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sfu:Sfum_0989 peptidase M20
YP_004113133.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sml:Smlt2214 putative flavodoxin containing oxidoreductase
YP_004113134.1	KEGG: wsu:WS1803 molybdenum ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004113135.1	KEGG: wsu:WS1804 molybdenum ABC transporter permease; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_004113136.1	PFAM: TOBE domain-containing protein; KEGG: pph:Ppha_1996 TOBE domain protein
YP_004113137.1	KEGG: glo:Glov_0450 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1
YP_004113138.1	PFAM: TOBE domain-containing protein; regulatory protein LysR; KEGG: cti:RALTA_A0628 transcriptional repressor for molybdate uptake
YP_004113139.1	KEGG: gsu:GSU2530 GTPase YjeQ; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC
YP_004113140.1	PFAM: Protein of unknown function DUF2229, CoA enzyme activase; KEGG: sfu:Sfum_1830 CoA enzyme activase
YP_004113141.1	KEGG: sfu:Sfum_1829 putative CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type
YP_004113142.1	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: plt:Plut_1549 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein
YP_004113143.1	TIGRFAM: PAS sensor protein; PFAM: Cache type 2 domain protein; PAS fold domain protein; CBS domain containing protein; KEGG: dps:DP2518 methyl-accepting chemotaxis protein A; SMART: PAS domain containing protein; CBS domain containing protein
YP_004113144.1	PFAM: protein of unknown function DUF294 nucleotidyltransferase; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; KEGG: afw:Anae109_4030 CBS domain-containing protein
YP_004113145.1	PFAM: metallophosphoesterase; KEGG: rpi:Rpic_2928 metallophosphoesterase
YP_004113146.1	PFAM: GPR1/FUN34/yaaH family protein; KEGG: dsa:Desal_0840 GPR1/FUN34/YaaH family protein
YP_004113147.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: aeh:Mlg_1023 NADH/ubiquinone/plastoquinone (complex I)
YP_004113148.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: alv:Alvin_1406 NADH/ubiquinone/plastoquinone (complex I)
YP_004113149.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: aeh:Mlg_0743 NADH dehydrogenase (quinone)
YP_004113150.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: hha:Hhal_0814 NADH-ubiquinone oxidoreductase, chain 4L
YP_004113151.1	KEGG: hha:Hhal_0815 hypothetical protein
YP_004113152.1	KEGG: aeh:Mlg_0740 putative monovalent cation/H+ antiporter subunit G; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit
YP_004113153.1	PFAM: multiple resistance and pH regulation protein F; KEGG: aeh:Mlg_0739 multiple resistance and pH regulation protein F
YP_004113154.1	KEGG: tgr:Tgr7_2669 cation antiporter
YP_004113155.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pzu:PHZ_p0157 D-lactate dehydrogenase
YP_004113156.1	TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: nam:NAMH_1803 GGDEF family protein; SMART: EAL domain protein; GGDEF domain containing protein
YP_004113158.1	TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: ppd:Ppro_3056 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein
YP_004113159.1	KEGG: plt:Plut_1691 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I
YP_004113160.1	KEGG: ddf:DEFDS_0044 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase
YP_004113161.1	PFAM: Carboxylyase-related protein; KEGG: pca:Pcar_3105 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YP_004113162.1	KEGG: dal:Dalk_0652 CheD
YP_004113163.1	TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD; KEGG: slp:Slip_1776 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region
YP_004113164.1	KEGG: aoe:Clos_0406 hemerythrin-like metal-binding protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein
YP_004113165.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: azl:AZL_009270 hypothetical protein; SMART: GGDEF domain containing protein
YP_004113166.1	KEGG: bpf:BpOF4_05410 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase
YP_004113167.1	KEGG: dap:Dacet_1446 beta-lactamase domain protein
YP_004113168.1	KEGG: glo:Glov_1909 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein
YP_004113169.1	KEGG: lre:Lreu_0972 hypothetical protein
YP_004113170.1	KEGG: shl:Shal_2048 tetratricopeptide repeat protein
YP_004113171.1	PFAM: nucleoside diphosphate kinase; KEGG: glo:Glov_3611 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase
YP_004113172.1	KEGG: hoh:Hoch_3419 hypothetical protein
YP_004113173.1	TIGRFAM: S-adenosylmethionine synthetase; KEGG: ddf:DEFDS_1515 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase
YP_004113174.1	PFAM: HPr serine kinase domain-containing protein; KEGG: ank:AnaeK_0153 HPr kinase/phosphorylase
YP_004113175.1	KEGG: adg:Adeg_1621 hypothetical protein
YP_004113176.1	PFAM: PTS system fructose subfamily IIA component; KEGG: dma:DMR_25830 phosphotransferase system enzyme IIA component
YP_004113177.1	PFAM: PTS system sorbose subfamily IIB component; KEGG: lcb:LCABL_03870 SipB
YP_004113178.1	KEGG: pca:Pcar_1932 PTS family phosphotransferase mannose-specific enzyme IIC; manually curated; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit
YP_004113179.1	PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: ddf:DEFDS_1052 hypothetical protein
YP_004113180.1	KEGG: abo:ABO_0548 phosphotransferase system; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr
YP_004113181.1	KEGG: xfa:XF1402 phosphotransferase system enzyme I; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region
YP_004113182.1	KEGG: mgm:Mmc1_3744 acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III
YP_004113183.1	TIGRFAM: ornithine carbamoyltransferase; KEGG: pjd:Pjdr2_5739 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region
YP_004113184.1	TIGRFAM: argininosuccinate synthase; KEGG: pca:Pcar_2417 argininosuccinate synthase; PFAM: argininosuccinate synthase
YP_004113185.1	PFAM: AMMECR1 domain protein; KEGG: dma:DMR_28890 hypothetical protein
YP_004113186.1	TIGRFAM: V-type H(+)-translocating pyrophosphatase; KEGG: geo:Geob_0832 membrane-bound proton-translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase
YP_004113187.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:bll7229 hypothetical protein
YP_004113188.1	KEGG: pha:PSHAa0272 protease GTPase subunit; TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related
YP_004113189.1	PFAM: protein of unknown function DUF218; KEGG: avn:Avin_09020 hypothetical protein
YP_004113190.1	KEGG: bja:bll5050 cation efflux system protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein
YP_004113191.1	KEGG: pgi:PG1465 hypothetical protein
YP_004113192.1	PFAM: major facilitator superfamily MFS_1; KEGG: wsu:WS1267 MFS family transporter
YP_004113193.1	KEGG: wsu:WS1265 ABC transporter ATP-binding/permease protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004113194.1	KEGG: dap:Dacet_1604 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase
YP_004113195.1	KEGG: mxa:MXAN_4075 hypothetical protein
YP_004113196.1	KEGG: pzu:PHZ_c1068 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004113197.1	KEGG: sdl:Sdel_1574 TonB-dependent receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug
YP_004113198.1	KEGG: ngk:NGK_0033 putative AraC-family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain
YP_004113199.1	PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: aat:D11S_1335 universal stress protein UspE
YP_004113200.1	KEGG: vap:Vapar_2068 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug
YP_004113201.1	KEGG: mpt:Mpe_A3723 putative outer membrane protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein
YP_004113202.1	KEGG: tmz:Tmz1t_3524 ABC transporter related; PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase
YP_004113203.1	KEGG: eba:ebA1846 hypothetical protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_004113204.1	PFAM: flavodoxin/nitric oxide synthase; KEGG: azc:AZC_1828 sulfite reductase alpha subunit
YP_004113205.1	KEGG: wsu:WS1415 hypothetical protein
YP_004113206.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hba:Hbal_2178 TonB-dependent receptor
YP_004113207.1	KEGG: dvu:DVU2021 hypothetical protein
YP_004113208.1	KEGG: rce:RC1_0804 TPR domain protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat
YP_004113209.1	KEGG: nwa:Nwat_2485 TonB family protein; TIGRFAM: TonB family protein; PFAM: TonB domain
YP_004113210.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nwa:Nwat_2486 biopolymer transport protein ExbD/TolR
YP_004113211.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: kko:Kkor_1942 MotA/TolQ/ExbB proton channel
YP_004113212.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: nhl:Nhal_3760 MotA/TolQ/ExbB proton channel
YP_004113213.1	KEGG: rce:RC1_0799 TonB system biopolymer transport component, putative
YP_004113214.1	manually curated; KEGG: dap:Dacet_0826 hypothetical protein
YP_004113215.1	KEGG: shw:Sputw3181_1082 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein
YP_004113216.1	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: hha:Hhal_1278 putative prophage repressor
YP_004113217.1	PFAM: heat shock protein Hsp20; KEGG: wsu:WS1299 hypothetical protein
YP_004113218.1	PFAM: heat shock protein Hsp20; KEGG: nis:NIS_1628 heat shock protein HSP20
YP_004113219.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cob:COB47_0876 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
YP_004113220.1	PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: bhy:BHWA1_01937 pyruvate oxireductase
YP_004113221.1	PFAM: Zinc finger C4-type, RecR; KEGG: bde:BDP_0229 recombination protein RecR
YP_004113222.1	PFAM: Uncharacterised protein family UPF0133; KEGG: slp:Slip_0035 hypothetical protein
YP_004113223.1	TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; KEGG: gbm:Gbem_0212 DNA polymerase III, subunits gamma and tau; SMART: AAA ATPase
YP_004113224.1	PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: hla:Hlac_1251 formyl transferase domain protein
YP_004113225.1	TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: ddf:DEFDS_1778 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein
YP_004113226.1	KEGG: gsu:GSU2863 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7
YP_004113227.1	KEGG: gem:GM21_3336 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12
YP_004113228.1	PFAM: ribosomal protein L10; KEGG: gsu:GSU2865 50S ribosomal protein L10
YP_004113229.1	KEGG: gur:Gura_1058 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1
YP_004113230.1	TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: cts:Ctha_1174 50S ribosomal protein L11; SMART: ribosomal protein L11
YP_004113231.1	TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KEGG: ddf:DEFDS_1784 transcriptional antitermination factor NusG; SMART: NGN domain-containing protein; KOW domain protein
YP_004113232.1	KEGG: sfu:Sfum_1543 preprotein translocase, SecE subunit; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein
YP_004113233.1	KEGG: dap:Dacet_0358 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33
YP_004113234.1	KEGG: nis:NIS_0260 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein
YP_004113235.1	KEGG: glo:Glov_1830 UbiD family decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein
YP_004113236.1	TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: dps:DP2827 ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein
YP_004113237.1	TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: pca:Pcar_2960 Fe-S oxidoreductase; SMART: Elongator protein 3/MiaB/NifB
YP_004113238.1	KEGG: geo:Geob_0693 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein
YP_004113239.1	TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme; KEGG: ade:Adeh_3748 tryptophan synthase subunit beta; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_004113240.1	KEGG: geo:Geob_1823 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_004113241.1	KEGG: geo:Geob_2314 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; histidine kinase A domain protein
YP_004113242.1	KEGG: dal:Dalk_0920 hypothetical protein
YP_004113243.1	PFAM: Radical SAM domain protein; KEGG: mth:MTH1227 coenzyme PQQ synthesis protein III
YP_004113244.1	PFAM: protein of unknown function DUF366; KEGG: dau:Daud_1235 hypothetical protein
YP_004113245.1	KEGG: bja:blr1316 ribonuclease H; PFAM: ribonuclease H
YP_004113246.1	KEGG: dap:Dacet_2471 flagellin domain protein
YP_004113247.1	KEGG: dap:Dacet_2472 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein
YP_004113248.1	KEGG: hor:Hore_17150 hypothetical protein
YP_004113249.1	KEGG: dak:DaAHT2_1945 anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein
YP_004113250.1	PFAM: Flagellar protein FlgJ-like; KEGG: dap:Dacet_2475 flagellar protein FlgJ-like protein
YP_004113251.1	KEGG: mst:Msp_0979 hypothetical protein
YP_004113252.1	PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1957; KEGG: dap:Dacet_0432 glycoside hydrolase family 57
YP_004113253.1	KEGG: pth:PTH_2227 hypothetical protein
YP_004113254.1	KEGG: dap:Dacet_0435 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase
YP_004113255.1	KEGG: dap:Dacet_0436 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1925; Domain of unknown function DUF1926
YP_004113256.1	PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: dtu:Dtur_1812 fibronectin-binding A domain protein
YP_004113257.1	TIGRFAM: histidinol dehydrogenase; KEGG: pca:Pcar_2688 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase
YP_004113258.1	PFAM: Phosphoglycerate mutase; KEGG: amt:Amet_3620 phosphoglycerate mutase
YP_004113259.1	PFAM: Extracellular solute-binding protein, family 7; KEGG: pca:Pcar_3017 C4-dicarboxylate transport system, periplasmic component
YP_004113260.1	KEGG: sfu:Sfum_1333 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase
YP_004113261.1	KEGG: eba:ebA6372 hypothetical protein
YP_004113262.1	PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rca:Rcas_1964 C4-dicarboxylate transporter/malic acid transport protein
YP_004113263.1	KEGG: eba:ebA3654 alcohol dehydrogenase; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein
YP_004113264.1	PFAM: regulatory protein TetR; AT hook, DNA-binding motif; KEGG: mno:Mnod_0809 transcriptional regulator, TetR family
YP_004113265.1	PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: glo:Glov_2795 NADH dehydrogenase (ubiquinone) 24 kDa subunit
YP_004113266.1	KEGG: glo:Glov_2794 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
YP_004113267.1	PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; KEGG: glo:Glov_2793 bidirectional hydrogenase complex protein HoxU
YP_004113268.1	PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: glo:Glov_2792 NADH ubiquinone oxidoreductase 20 kDa subunit
YP_004113269.1	manually curated; KEGG: tcx:Tcr_2118 hypothetical protein
YP_004113270.1	KEGG: dap:Dacet_1134 glutathione-dependent formaldehyde-activating GFA; manually curated; PFAM: glutathione-dependent formaldehyde-activating GFA
YP_004113271.1	KEGG: noc:Noc_1856 hypothetical protein
YP_004113272.1	TIGRFAM: prevent-host-death family protein; KEGG: aeh:Mlg_1787 prevent-host-death family protein
YP_004113273.1	KEGG: cch:Cag_0655 hypothetical protein
YP_004113274.1	TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: gpb:HDN1F_22750 plasmid maintenance system antidote protein; SMART: helix-turn-helix domain protein
YP_004113275.1	PFAM: Integrase catalytic region; KEGG: neu:NE0155 integrase catalytic subunit
YP_004113276.1	KEGG: noc:Noc_1856 hypothetical protein
YP_004113277.1	manually curated; KEGG: pol:Bpro_4964 transposase
YP_004113278.1	PFAM: Methyltransferase type 11; KEGG: afw:Anae109_4039 methyltransferase type 12
YP_004113279.1	PFAM: Lipocalin family protein; KEGG: sbm:Shew185_1501 lipocalin family protein
YP_004113280.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dak:DaAHT2_0229 diguanylate cyclase; SMART: GGDEF domain containing protein
YP_004113281.1	PFAM: cyclic nucleotide-binding; KEGG: ant:Arnit_1644 putative Crp/Fnr family transcriptional regulator
YP_004113282.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: chu:CHU_2258 oxidoreductase
YP_004113283.1	PFAM: Methyltransferase type 11; KEGG: cph:Cpha266_1157 methyltransferase type 11
YP_004113284.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: glo:Glov_2791 nickel-dependent hydrogenase large subunit
YP_004113285.1	TIGRFAM: hydrogenase maturation protease; KEGG: sfu:Sfum_2717 hypothetical protein
YP_004113286.1	KEGG: dak:DaAHT2_2440 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region
YP_004113287.1	KEGG: chy:CHY_1834 CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
YP_004113288.1	KEGG: tjr:TherJR_1937 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane
YP_004113289.1	KEGG: tjr:TherJR_2968 transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp
YP_004113290.1	PFAM: alpha/beta hydrolase fold; KEGG: oih:OB0923 hypothetical protein
YP_004113291.1	TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: pca:Pcar_0442 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein
YP_004113292.1	TIGRFAM: TonB family protein; KEGG: tkm:TK90_0441 TonB family protein
YP_004113293.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cli:Clim_1563 biopolymer transport protein ExbD/TolR
YP_004113294.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: aha:AHA_3435 hypothetical protein
YP_004113295.1	KEGG: str:Sterm_0589 flavodoxin family protein
YP_004113296.1	PFAM: protein of unknown function DUF1008; KEGG: dap:Dacet_0822 hypothetical protein
YP_004113297.1	KEGG: hha:Hhal_0379 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004113298.1	PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein
YP_004113299.1	PFAM: Conserved hypothetical CHP02185, integral membrane; KEGG: hha:Hhal_0381 hypothetical protein
YP_004113300.1	PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: dap:Dacet_0825 TonB-dependent receptor plug
YP_004113301.1	PFAM: Radical SAM domain protein; HemN domain protein; KEGG: alv:Alvin_1684 coproporphyrinogen dehydrogenase; SMART: Elongator protein 3/MiaB/NifB
YP_004113302.1	KEGG: dap:Dacet_0826 hypothetical protein
YP_004113303.1	KEGG: wsu:WS1328 putative two-component sensor; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_004113304.1	KEGG: dde:Dde_0495 heavy metal translocating P-type ATPase
YP_004113305.1	KEGG: abu:Abu_0715 hypothetical protein
YP_004113306.1	KEGG: nph:NP2172A taxis sensor histidine kinase
YP_004113307.1	KEGG: sen:SACE_1840 MarR family transcriptional regulator
YP_004113308.1	KEGG: wsu:WS1572 hypothetical protein
YP_004113309.1	KEGG: eba:ebA609 putative cation transport ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase
YP_004113310.1	KEGG: ant:Arnit_2682 hypothetical protein
YP_004113311.1	PFAM: FeoA family protein; KEGG: amt:Amet_0946 FeoA family protein
YP_004113312.1	KEGG: amt:Amet_0947 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein
YP_004113313.1	KEGG: amt:Amet_0948 hypothetical protein
YP_004113314.1	KEGG: amt:Amet_0949 hypothetical protein
YP_004113315.1	PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: hiq:CGSHiGG_01005 universal stress protein UspE
YP_004113316.1	KEGG: cim:CIMG_04712 hypothetical protein
YP_004113317.1	KEGG: glo:Glov_0398 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; thioesterase superfamily protein
YP_004113318.1	KEGG: gme:Gmet_1216 acetyl-CoA carboxylase carboxyltransferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region
YP_004113319.1	PFAM: Peptidase M23; KEGG: paa:Paes_1980 peptidase M23
YP_004113320.1	KEGG: gsu:GSU3076 cell division protein FtsL, putative
YP_004113321.1	KEGG: glo:Glov_0676 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain
YP_004113322.1	KEGG: swo:Swol_0821 UDP-N-acetylmuramyl-tripeptide synthetases; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein
YP_004113323.1	KEGG: mmw:Mmwyl1_1032 hypothetical protein
YP_004113324.1	KEGG: pca:Pcar_2636 putative RNA-binding protein
YP_004113325.1	KEGG: toc:Toce_1695 diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding
YP_004113326.1	PFAM: ABC-1 domain-containing protein; KEGG: ote:Oter_4049 hypothetical protein
YP_004113327.1	KEGG: pca:Pcar_1613 carbamoyl phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I
YP_004113328.1	PFAM: outer membrane efflux protein; KEGG: aar:Acear_1853 outer membrane efflux protein
YP_004113329.1	KEGG: cag:Cagg_1936 DNA mismatch repair protein MutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein
YP_004113330.1	TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: gem:GM21_3281 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase
YP_004113331.1	PFAM: SapC family protein; KEGG: mgm:Mmc1_2181 SapC family protein
YP_004113332.1	KEGG: dak:DaAHT2_1867 tetratricopeptide TPR_2 repeat protein
YP_004113333.1	KEGG: dsa:Desal_3384 hemolysin-type calcium-binding region
YP_004113334.1	PFAM: leucine-rich repeat-containing protein; KEGG: cte:CT1526 Rab family protein
YP_004113335.1	KEGG: tgr:Tgr7_3156 glucose sorbosone dehydrogenase
YP_004113336.1	KEGG: aeh:Mlg_1184 hypothetical protein
YP_004113337.1	KEGG: geo:Geob_2301 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region
YP_004113338.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: maq:Maqu_3635 short-chain dehydrogenase/reductase SDR
YP_004113339.1	KEGG: har:HEAR2481 meso-diaminopimelate D-dehydrogenase; TIGRFAM: diaminopimelate dehydrogenase
YP_004113340.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dba:Dbac_2051 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004113341.1	KEGG: jan:Jann_0877 hypothetical protein
YP_004113342.1	KEGG: epy:EpC_04560 conserved uncharacterized protein
YP_004113343.1	PFAM: Methyltransferase type 11; KEGG: alv:Alvin_1115 methyltransferase type 11
YP_004113344.1	KEGG: gsu:GSU0639 hypothetical protein
YP_004113345.1	KEGG: cin:100180542 similar to calcium-sensing receptor
YP_004113346.1	PFAM: alpha/beta hydrolase fold; KEGG: afw:Anae109_3153 hypothetical protein
YP_004113347.1	KEGG: slp:Slip_0498 diguanylate cyclase and metal dependent phosphohydrolase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein
YP_004113348.1	KEGG: hha:Hhal_1804 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_004113349.1	KEGG: gsu:GSU2299 cytochrome c family protein
YP_004113350.1	TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; KEGG: dap:Dacet_1039 transcriptional regulator, NifA subfamily, fis family; SMART: GAF domain protein; AAA ATPase
YP_004113351.1	KEGG: dap:Dacet_1056 hypothetical protein
YP_004113352.1	PFAM: Radical SAM domain protein; KEGG: dap:Dacet_1055 nitrogenase cofactor biosynthesis protein NifB
YP_004113353.1	KEGG: dap:Dacet_1054 pyruvate carboxyltransferase; TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase
YP_004113354.1	PFAM: CheC domain protein; KEGG: ddf:DEFDS_0111 hypothetical protein
YP_004113355.1	KEGG: tgr:Tgr7_2730 YbaK/EbsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region
YP_004113356.1	PFAM: protein of unknown function DUF37; KEGG: dol:Dole_1043 hypothetical protein
YP_004113357.1	TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; KEGG: aoe:Clos_2826 multi-sensor signal transduction histidine kinase; SMART: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein
YP_004113358.1	PFAM: YCII-related; KEGG: ara:Arad_4352 YciI-like protein
YP_004113359.1	KEGG: sat:SYN_01029 SAM-dependent methyltransferase; PFAM: protein of unknown function Met10; SMART: PUA domain containing protein
YP_004113360.1	PFAM: Conserved hypothetical protein CHP00730; KEGG: rba:RB10175 hypothetical protein
YP_004113361.1	PFAM: inositol monophosphatase; KEGG: ddf:DEFDS_1499 inositol-phosphate phosphatase
YP_004113362.1	KEGG: mgm:Mmc1_3411 hypothetical protein
YP_004113363.1	PFAM: Smr protein/MutS2; KEGG: fnu:FN1563 hypothetical protein
YP_004113364.1	KEGG: cja:CJA_3618 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004113365.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dak:DaAHT2_2225 binding-protein-dependent transport systems inner membrane component
YP_004113366.1	PFAM: extracellular solute-binding protein family 1; KEGG: tkm:TK90_0299 extracellular solute-binding protein family 1
YP_004113367.1	KEGG: gur:Gura_3394 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004113368.1	KEGG: aha:AHA_3838 chemotaxis protein CheV; PFAM: response regulator receiver; CheW domain protein; SMART: CheW domain protein; response regulator receiver
YP_004113369.1	PFAM: ribosomal protein S9; KEGG: csc:Csac_1343 30S ribosomal protein S9
YP_004113370.1	KEGG: cdf:CD0104 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13
YP_004113371.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: ssm:Spirs_3118 peptidyl-prolyl cis-trans isomerase cyclophilin type
YP_004113372.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; KEGG: plm:Plim_2762 PAS sensor protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver
YP_004113373.1	KEGG: dvm:DvMF_2052 hypothetical protein
YP_004113374.1	KEGG: ddf:DEFDS_2108 hypothetical protein
YP_004113375.1	KEGG: gka:GK0240 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004113376.1	KEGG: dap:Dacet_0149 cobalamin 5'-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS
YP_004113377.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: sat:SYN_01637 transposase
YP_004113378.1	PFAM: cobalbumin biosynthesis protein; KEGG: dap:Dacet_0147 cobalbumin biosynthesis protein
YP_004113379.1	PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: dap:Dacet_0152 xylose isomerase domain protein TIM barrel
YP_004113380.1	TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: gsu:GSU2879 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_004113381.1	KEGG: aba:Acid345_2072 putative outer membrane protein B, OmpB
YP_004113382.1	KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein
YP_004113383.1	KEGG: aeh:Mlg_1489 SPFH domain-containing protein/band 7 family protein; PFAM: band 7 protein; SMART: band 7 protein
YP_004113384.1	PFAM: protein of unknown function DUF107; KEGG: nhl:Nhal_3157 protein of unknown function DUF107
YP_004113385.1	PFAM: peptidase M16 domain protein; KEGG: dap:Dacet_0861 peptidase M16 domain protein
YP_004113386.1	KEGG: ttr:Tter_0083 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat
YP_004113387.1	KEGG: ddf:DEFDS_1792 hypothetical protein
YP_004113388.1	PFAM: AIG2 family protein; Methyltransferase type 11; KEGG: npu:Npun_R4155 hypothetical protein
YP_004113389.1	KEGG: nam:NAMH_1443 putative mcp-domain signal transduction protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer
YP_004113390.1	KEGG: geo:Geob_2932 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc
YP_004113391.1	TIGRFAM: TonB family protein; KEGG: tye:THEYE_A1659 protein TonB, putative
YP_004113392.1	KEGG: glo:Glov_0470 radical SAM domain protein; PFAM: Protein of unknown function DUF2344; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_004113393.1	KEGG: vdi:Vdis_0322 RNA-metabolising metallo-beta-lactamase
YP_004113394.1	TIGRFAM: enolase; KEGG: drm:Dred_2987 phosphopyruvate hydratase; PFAM: Enolase-like
YP_004113395.1	PFAM: protein of unknown function UPF0005; KEGG: cha:CHAB381_0363 hypothetical protein
YP_004113396.1	KEGG: chl:Chy400_4251 chromosome segregation and condensation protein, ScpB; TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB
YP_004113397.1	PFAM: chromosome segregation and condensation protein ScpA; KEGG: gem:GM21_1926 chromosome segregation and condensation protein ScpA
YP_004113398.1	TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: cth:Cthe_0686 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib
YP_004113399.1	KEGG: mgi:Mflv_2907 acyl-CoA thioesterase
YP_004113400.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: dap:Dacet_2262 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
YP_004113401.1	KEGG: gme:Gmet_1939 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase
YP_004113402.1	PFAM: metallophosphoesterase; KEGG: gur:Gura_1101 metallophosphoesterase
YP_004113403.1	KEGG: pph:Ppha_0018 ribonuclease HII; PFAM: ribonuclease HII/HIII
YP_004113404.1	KEGG: pdi:BDI_2806 2-oxoglutarate ferredoxin oxidoreductase subunit beta; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein
YP_004113405.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: glo:Glov_3720 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
YP_004113406.1	KEGG: gsu:GSU1178 succinate dehydrogenase/fumarate reductase iron-sulfur subunit
YP_004113407.1	TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; KEGG: gem:GM21_0913 succinate dehydrogenase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_004113408.1	TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: gsu:GSU1176 fumarate reductase, cytochrome b subunit, putative
YP_004113409.1	KEGG: geo:Geob_2664 malate dehydrogenase; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase
YP_004113410.1	TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: plt:Plut_0459 isocitrate dehydrogenase NADP-dependent, monomeric type; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type
YP_004113411.1	KEGG: kra:Krad_3411 coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_004113412.1	PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: ddf:DEFDS_0275 hypothetical protein
YP_004113413.1	KEGG: bta:533181 low-density lipoprotein receptor-related protein 2-like
YP_004113414.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mta:Moth_1989 cysteine synthase / cystathionine gamma-synthase
YP_004113415.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: hmo:HM1_1731 cystathionine beta-lyase
YP_004113416.1	PFAM: high-affinity nickel-transporter; KEGG: wsu:WS0271 hypothetical protein
YP_004113417.1	PFAM: cytochrome c oxidase subunit I; KEGG: dak:DaAHT2_0175 cytochrome c oxidase subunit I
YP_004113418.1	KEGG: dak:DaAHT2_0176 cytochrome c oxidase, cbb3-type, subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I
YP_004113419.1	KEGG: gem:GM21_3042 hypothetical protein
YP_004113420.1	PFAM: cytochrome c class I; KEGG: gem:GM21_3043 cytochrome c class I
YP_004113421.1	KEGG: gbm:Gbem_1233 4Fe-4S ferredoxin, iron-sulfur binding protein
YP_004113422.1	KEGG: dak:DaAHT2_1153 hypothetical protein
YP_004113423.1	KEGG: ssm:Spirs_0440 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein
YP_004113424.1	KEGG: gur:Gura_0797 hypothetical protein
YP_004113425.1	KEGG: cte:CT1526 Rab family protein; PFAM: Fibronectin type III domain protein; leucine-rich repeat-containing protein; SMART: Fibronectin type III domain protein; leucine-rich repeat-containing protein typical subtype
YP_004113426.1	PFAM: FixH family protein; KEGG: gem:GM21_3045 FixH family protein
YP_004113427.1	KEGG: dak:DaAHT2_0181 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase
YP_004113428.1	KEGG: dak:DaAHT2_0182 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type
YP_004113429.1	PFAM: type II and III secretion system protein; KEGG: hha:Hhal_0329 pilus (MSHA type) biogenesis protein MshL
YP_004113430.1	PFAM: protein of unknown function DUF81; KEGG: dvm:DvMF_1203 protein of unknown function DUF81
YP_004113431.1	PFAM: NLP/P60 protein; KEGG: wsu:WS1317 hypothetical protein
YP_004113432.1	KEGG: mvu:Metvu_1679 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like
YP_004113433.1	KEGG: gbm:Gbem_1957 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase
YP_004113434.1	KEGG: pca:Pcar_0734 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI)
YP_004113435.1	KEGG: kpn:KPN_00830 ATP-dependent RNA helicase RhlE; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein
YP_004113436.1	PFAM: 4-oxalocrotonate tautomerase; KEGG: cgt:cgR_0081 hypothetical protein
YP_004113437.1	KEGG: ccv:CCV52592_0945 ATPase
YP_004113438.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pjd:Pjdr2_4352 2-aminoethylphosphonate ABC transport system, permease protein
YP_004113439.1	KEGG: rca:Rcas_1237 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004113440.1	PFAM: extracellular solute-binding protein family 1; KEGG: bbe:BBR47_45010 ABC transporter substrate binding protein
YP_004113441.1	KEGG: xau:Xaut_3965 phosphonate ABC transporter, inner membrane subunit; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_004113442.1	KEGG: xau:Xaut_3964 phosphonate ABC transporter, inner membrane subunit; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component
YP_004113443.1	TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: rde:RD1_1056 phosphonate ABC transporter, ATP-binding protein; SMART: AAA ATPase
YP_004113444.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dsh:Dshi_2009 putative phosphonates-binding periplasmic protein
YP_004113445.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dsh:Dshi_2009 putative phosphonates-binding periplasmic protein
YP_004113446.1	KEGG: gur:Gura_2601 hypothetical protein
YP_004113447.1	KEGG: oih:OB1057 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_004113448.1	PFAM: protein of unknown function UPF0061; KEGG: bcy:Bcer98_2214 hypothetical protein
YP_004113449.1	PFAM: flagellin domain protein; KEGG: dap:Dacet_0501 flagellin domain protein
YP_004113450.1	KEGG: ele:Elen_2384 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_004113451.1	PFAM: Polysulphide reductase NrfD; KEGG: ddf:DEFDS_1697 molybdopterin oxidoreductase membrane subunit
YP_004113452.1	KEGG: sus:Acid_4312 hypothetical protein
YP_004113453.1	KEGG: gsu:GSU2203 cytochrome c family protein
YP_004113454.1	KEGG: glo:Glov_1147 cytoplasmic chaperone TorD family protein
YP_004113455.1	KEGG: tmz:Tmz1t_0392 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_004113456.1	KEGG: geo:Geob_2170 hypothetical protein
YP_004113457.1	KEGG: hha:Hhal_1375 hypothetical protein
YP_004113458.1	KEGG: hha:Hhal_1374 nitrite reductase (cytochrome; ammonia-forming); PFAM: cytochrome c552
YP_004113460.1	KEGG: tal:Thal_0500 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_004113461.1	KEGG: tle:Tlet_0507 hypothetical protein
YP_004113462.1	PFAM: glycosyl transferase group 1; PHP domain protein; KEGG: hya:HY04AAS1_0697 glycosyl transferase group 1
YP_004113463.1	PFAM: periplasmic binding protein; KEGG: dde:Dde_1622 iron transport periplasmic binding protein
YP_004113464.1	PFAM: transport system permease protein; KEGG: dol:Dole_1652 transport system permease protein
YP_004113465.1	KEGG: dde:Dde_1624 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004113466.1	PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: dsa:Desal_0072 formylmethanofuran dehydrogenase subunit E region
YP_004113467.1	PFAM: ABC transporter related; KEGG: tpd:Teth39_0649 ABC transporter related
YP_004113468.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: sat:SYN_01637 transposase
YP_004113469.1	KEGG: gem:GM21_0525 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004113470.1	KEGG: gsu:GSU1549 putative lipoprotein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein
YP_004113471.1	KEGG: aeh:Mlg_2563 plasmid stabilization system protein; manually curated; PFAM: plasmid stabilization system
YP_004113472.1	TIGRFAM: prevent-host-death family protein; KEGG: aeh:Mlg_2562 prevent-host-death family protein
YP_004113473.1	KEGG: tpv:TP01_1193 hypothetical protein
YP_004113474.1	manually curated; KEGG: pol:Bpro_4964 transposase
YP_004113475.1	KEGG: pcs:Pc16g06040 Pc16g06040
YP_004113476.1	PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: azo:azo0745 glutamate-tRNA ligase
YP_004113477.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: mlo:mlr7549 nucleotide sugar epimerase
YP_004113478.1	TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: nis:NIS_0434 tRNA-specific 2-thiouridylase MnmA
YP_004113479.1	KEGG: ppd:Ppro_1832 cysteine synthase A; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_004113480.1	KEGG: glo:Glov_3307 flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein
YP_004113481.1	KEGG: ddf:DEFDS_0520 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein
YP_004113482.1	KEGG: dap:Dacet_2315 flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE
YP_004113483.1	KEGG: ddf:DEFDS_0522 flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein
YP_004113484.1	KEGG: ddf:DEFDS_0523 flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG
YP_004113485.1	PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: hmo:HM1_2223 flagellar assembly protein FliH, putative
YP_004113486.1	TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: aoe:Clos_1482 flagellar protein export ATPase FliI; SMART: AAA ATPase
YP_004113487.1	KEGG: dbr:Deba_0916 flagellar export protein FliJ
YP_004113488.1	PFAM: MgtE intracellular region; KEGG: dap:Dacet_2309 hypothetical protein
YP_004113489.1	PFAM: regulatory protein TetR; KEGG: tcx:Tcr_1884 TetR family transcriptional regulator
YP_004113490.1	KEGG: dbr:Deba_1302 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin
YP_004113491.1	KEGG: lif:LinJ34.2800 hypothetical protein
YP_004113492.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: dol:Dole_1175 phosphomannomutase
YP_004113493.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: sun:SUN_0485 twitching motility protein PilT; SMART: AAA ATPase
YP_004113494.1	SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; TIGRFAM: DNA topoisomerase I; KEGG: dak:DaAHT2_2318 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein
YP_004113495.1	KEGG: kfl:Kfla_6382 hypothetical protein
YP_004113496.1	TIGRFAM: aspartate 1-decarboxylase; KEGG: sma:SAV_7245 aspartate alpha-decarboxylase; PFAM: aspartate decarboxylase
YP_004113497.1	KEGG: cth:Cthe_0901 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase
YP_004113498.1	TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: adg:Adeg_1877 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase
YP_004113499.1	PFAM: Sporulation domain-containing protein; KEGG: mxa:MXAN_3502 adventurous gliding motility protein AgmI
YP_004113500.1	TIGRFAM: arginyl-tRNA synthetase; KEGG: gem:GM21_1940 arginyl-tRNA synthetase
YP_004113501.1	KEGG: geo:Geob_3286 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein
YP_004113502.1	KEGG: ddf:DEFDS_0117 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region
YP_004113503.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_2325 acetyltransferase
YP_004113504.1	PFAM: amidohydrolase; KEGG: dvu:DVU2900 amidohydrolase family protein
YP_004113505.1	KEGG: ddf:DEFDS_0969 adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related
YP_004113506.1	PFAM: thiamine monophosphate synthase; KEGG: bpf:BpOF4_14025 thiamine phosphate pyrophosphorylase
YP_004113507.1	KEGG: drt:Dret_0490 ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15
YP_004113508.1	SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: ppd:Ppro_0968 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein
YP_004113509.1	KEGG: bja:blr0420 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21
YP_004113510.1	KEGG: hba:Hbal_0168 ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27
YP_004113511.1	KEGG: tal:Thal_0675 GTP-binding protein Obg/CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related
YP_004113512.1	KEGG: apv:Apar_0686 iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein
YP_004113513.1	PFAM: protein of unknown function DUF163; KEGG: pru:PRU_0727 hypothetical protein
YP_004113514.1	KEGG: dap:Dacet_2921 transcriptional regulator, TraR/DksA family
YP_004113515.1	TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: pca:Pcar_2574 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein
YP_004113516.1	KEGG: dbr:Deba_1274 phosphoribosyltransferase
YP_004113517.1	KEGG: dap:Dacet_2918 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein
YP_004113518.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: sth:STH1645 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
YP_004113519.1	KEGG: sth:STH242 phosphoglycerate kinase; PFAM: phosphoglycerate kinase
YP_004113520.1	PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dde:Dde_0990 ATP synthase F0, B' subunit
YP_004113521.1	PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: sat:SYN_00548 ATP synthase B chain
YP_004113522.1	KEGG: rmr:Rmar_0314 ATP synthase F1, delta subunit; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit
YP_004113523.1	KEGG: ddf:DEFDS_1888 F0F1-type ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein
YP_004113524.1	KEGG: gem:GM21_4036 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit
YP_004113525.1	TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: ddf:DEFDS_1886 F0F1-type ATP synthase subunit beta; SMART: AAA ATPase
YP_004113526.1	KEGG: ddf:DEFDS_1885 F0F1-type ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like
YP_004113527.1	KEGG: glo:Glov_3453 sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein
YP_004113528.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: bsu:BSU15460 pseudouridylate synthase; SMART: RNA-binding S4 domain protein
YP_004113529.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: dol:Dole_2202 hypothetical protein
YP_004113530.1	KEGG: gem:GM21_0365 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004113531.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tpd:Teth39_2018 tRNA/rRNA methyltransferase (SpoU)
YP_004113532.1	KEGG: alv:Alvin_0620 cell cycle protein
YP_004113533.1	KEGG: wsu:WS0293 carbonic anyhydrase; PFAM: carbonic anhydrase
YP_004113534.1	TIGRFAM: putative solute symporter protein; KEGG: ilo:IL1179 hypothetical protein
YP_004113535.1	KEGG: abo:ABO_2158 putative sodium/solute symporter; TIGRFAM: putative sodium symporter protein; PFAM: Na+/solute symporter
YP_004113536.1	KEGG: ppp:PHYPADRAFT_159434 hypothetical protein
YP_004113537.1	KEGG: vfi:VF_A0616 hypothetical protein
YP_004113538.1	KEGG: psl:Psta_1546 protein of unknown function DUF485
YP_004113539.1	PFAM: Na+/solute symporter; KEGG: rba:RB11856 putative symporter YwcA
YP_004113540.1	KEGG: cpi:Cpin_3320 sulfatase
YP_004113541.1	PFAM: aminotransferase class I and II; KEGG: dfe:Dfer_2723 aminotransferase class I and II
YP_004113542.1	TIGRFAM: D-alanine/D-alanine ligase; KEGG: pca:Pcar_2199 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein
YP_004113543.1	PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: cli:Clim_2500 polypeptide-transport-associated domain protein FtsQ-type
YP_004113544.1	KEGG: gur:Gura_3969 cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA
YP_004113545.1	KEGG: ser:SERP0751 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain
YP_004113546.1	KEGG: ote:Oter_0841 hypothetical protein
YP_004113547.1	KEGG: gsu:GSU3103 HemK family modification methylase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small
YP_004113548.1	KEGG: chy:CHY_2563 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein
YP_004113549.1	PFAM: CoA-binding domain protein; KEGG: hau:Haur_4825 CoA-binding domain-containing protein
YP_004113550.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: ank:AnaeK_4420 NAD-dependent epimerase/dehydratase
YP_004113551.1	PFAM: protein of unknown function DUF558; KEGG: lsp:Bsph_3794 hypothetical protein
YP_004113552.1	KEGG: gsu:GSU0447 ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase
YP_004113553.1	KEGG: sde:Sde_3145 ATPase
YP_004113554.1	KEGG: dal:Dalk_0932 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain
YP_004113555.1	TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: ppd:Ppro_3028 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase
YP_004113556.1	PFAM: protein of unknown function DUF178; KEGG: mta:Moth_1845 hypothetical protein
YP_004113557.1	SMART: helicase c2; DEAD-like helicase; KEGG: ppd:Ppro_0509 helicase C2
YP_004113558.1	KEGG: gme:Gmet_0918 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl
YP_004113559.1	TIGRFAM: adenosylhomocysteinase; KEGG: nwa:Nwat_0437 adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding
YP_004113560.1	KEGG: rcp:RCAP_rcc00930 hypothetical protein
YP_004113561.1	manually curated; KEGG: pol:Bpro_4964 transposase
YP_004113562.1	KEGG: geo:Geob_0531 hypothetical protein
YP_004113563.1	KEGG: dap:Dacet_1927 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein
YP_004113564.1	KEGG: emi:Emin_1189 hypothetical protein
YP_004113565.1	KEGG: cob:COB47_0493 anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein
YP_004113566.1	PFAM: Ferritin Dps family protein; KEGG: dap:Dacet_2337 ferritin Dps family protein
YP_004113567.1	KEGG: pag:PLES_16511 putative sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein
YP_004113568.1	PFAM: FecR protein; KEGG: nwi:Nwi_1969 FecR protein
YP_004113569.1	manually curated; KEGG: pol:Bpro_4964 transposase
YP_004113570.1	KEGG: cja:CJA_2679 HasR; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain
YP_004113571.1	KEGG: cja:CJA_2678 putative lipoprotein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein
YP_004113572.1	manually curated; KEGG: pol:Bpro_4964 transposase
YP_004113573.1	PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: dze:Dd1591_3545 D12 class N6 adenine-specific DNA methyltransferase
YP_004113574.1	KEGG: bth:BT_4010 hypothetical protein
YP_004113575.1	KEGG: ddc:Dd586_3776 hypothetical protein
YP_004113576.1	KEGG: ddc:Dd586_3775 hypothetical protein
YP_004113577.1	KEGG: cja:CJA_1583 CRISPR-associated protein, Csm2 family
YP_004113578.1	KEGG: cja:CJA_1584 RloA protein
YP_004113579.1	PFAM: nitroreductase; KEGG: bmr:BMI_II493 hypothetical protein
YP_004113580.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pmx:PERMA_0275 succinyl-diaminopimelate desuccinylase
YP_004113581.1	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: aeh:Mlg_1711 outer membrane lipoprotein carrier protein LolA
YP_004113582.1	SMART: Ribosomal RNA adenine methylase transferase-like; TIGRFAM: dimethyladenosine transferase; KEGG: tra:Trad_2546 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase
YP_004113583.1	TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: nde:NIDE0536 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA
YP_004113584.1	TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; KEGG: geo:Geob_3711 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein
YP_004113585.1	KEGG: dau:Daud_1255 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit
YP_004113586.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: dau:Daud_1256 TRAP transporter solute receptor TAXI family protein
YP_004113587.1	TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; KEGG: ppd:Ppro_2651 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase
YP_004113588.1	KEGG: pca:Pcar_2694 ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31
YP_004113589.1	KEGG: gme:Gmet_0378 FAD-dependent thymidylate synthase; TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX
YP_004113590.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sfu:Sfum_1152 methyltransferase GidB
YP_004113591.1	KEGG: sco:SCO2104 thiamine-phosphate pyrophosphorylase
YP_004113592.1	PFAM: pseudouridine synthase; KEGG: sfu:Sfum_1153 pseudouridine synthase
YP_004113593.1	KEGG: tmt:Tmath_1219 regulatory protein RecX
YP_004113594.1	KEGG: hmo:HM1_0679 tRNA(Ile)-lysidine synthase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase
YP_004113595.1	TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: ere:EUBREC_0534 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_004113596.1	SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: dak:DaAHT2_0902 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein
YP_004113597.1	TIGRFAM: dihydropteroate synthase; KEGG: alv:Alvin_2126 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS
YP_004113598.1	PFAM: protein of unknown function DUF147; KEGG: tye:THEYE_A0044 hypothetical protein
YP_004113599.1	KEGG: pca:Pcar_1000 hypothetical protein
YP_004113600.1	KEGG: gbm:Gbem_2635 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase
YP_004113601.1	TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: glo:Glov_2526 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ
YP_004113602.1	KEGG: hor:Hore_01660 holo-(acyl-carrier-protein) synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase
YP_004113603.1	TIGRFAM: CTP synthase; KEGG: ddf:DEFDS_1037 CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I
YP_004113604.1	PFAM: protein of unknown function DUF490; KEGG: zmn:Za10_0759 protein of unknown function DUF490
YP_004113605.1	PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; KEGG: hth:HTH_0601 outer membrane protein
YP_004113606.1	KEGG: dap:Dacet_1320 CDP-diacylglycerol/glycerol-3-phosphate3-phosphatidy transferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004113607.1	PFAM: cytochrome c assembly protein; KEGG: wsu:WS2159 cytochrome c biogenesis protein (ycf5)
YP_004113608.1	KEGG: gbm:Gbem_0015 Radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_004113609.1	TIGRFAM: uroporphyrinogen decarboxylase; KEGG: glo:Glov_3245 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D)
YP_004113610.1	PFAM: cytochrome c assembly protein; KEGG: geo:Geob_1301 cytochrome c-type biogenesis protein CcsB
YP_004113611.1	KEGG: gur:Gura_0360 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like
YP_004113612.1	KEGG: gsu:GSU3285 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase
YP_004113613.1	PFAM: Thioredoxin domain-containing protein; KEGG: glo:Glov_1185 thioredoxin domain
YP_004113614.1	SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: ddf:DEFDS_0048 GTP pyrophosphokinase; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein
YP_004113615.1	manually curated; KEGG: pol:Bpro_4964 transposase
YP_004113616.1	KEGG: dhd:Dhaf_0643 protein of unknown function DUF262; manually curated; PFAM: protein of unknown function DUF262
YP_004113617.1	KEGG: hse:Hsero_0921 hypothetical protein
YP_004113618.1	KEGG: lel:LELG_00765 hypothetical protein
YP_004113619.1	KEGG: noc:Noc_1856 hypothetical protein
YP_004113620.1	PFAM: phospholipase/Carboxylesterase; KEGG: pst:PSPTO_3282 lipoprotein, putative
YP_004113621.1	KEGG: sro:Sros_4471 transcriptional regulators-like protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR
YP_004113622.1	KEGG: mpt:Mpe_A2136 putative transporter lipoprotein transmembrane; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_004113623.1	PFAM: acriflavin resistance protein; KEGG: rfr:Rfer_4104 acriflavin resistance protein
YP_004113624.1	KEGG: cfa:481782 kinesin family member 6
YP_004113625.1	KEGG: geo:Geob_2060 hypothetical protein
YP_004113626.1	PFAM: multi antimicrobial extrusion protein MatE; KEGG: alv:Alvin_1117 multi antimicrobial extrusion protein MatE
YP_004113627.1	KEGG: gsu:GSU2307 carbonic anhydrase; PFAM: carbonic anhydrase
YP_004113628.1	TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: gsu:GSU2306 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_004113629.1	PFAM: Protein of unknown function DUF2294; KEGG: psl:Psta_1689 hypothetical protein
YP_004113630.1	KEGG: cbe:Cbei_1260 hypothetical protein
YP_004113631.1	KEGG: glo:Glov_3259 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein
YP_004113632.1	TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: dap:Dacet_1930 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein
YP_004113633.1	PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: gur:Gura_0652 biotin/lipoyl attachment domain-containing protein
YP_004113634.1	KEGG: geo:Geob_0837 propionyl-CoA carboxylase; PFAM: carboxyl transferase
YP_004113635.1	TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: gme:Gmet_0852 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase
YP_004113636.1	KEGG: dat:HRM2_27220 putative preprotein translocase, subunit YajC; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein
YP_004113637.1	KEGG: dap:Dacet_2451 protein-export membrane protein SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein
YP_004113638.1	KEGG: alv:Alvin_1198 protein-export membrane protein SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein
YP_004113639.1	PFAM: protein of unknown function DUF81; KEGG: dak:DaAHT2_1597 protein of unknown function DUF81
YP_004113640.1	KEGG: dae:Dtox_2805 CBS domain-containing membrane protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein
YP_004113641.1	PFAM: Uncharacterised protein family UPF0079, ATPase; KEGG: aca:ACP_3160 conserved hypothetical protein TIGR00150
YP_004113642.1	KEGG: tet:TTHERM_00239400 SET domain containing protein
YP_004113643.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: gme:Gmet_1568 UBA/ThiF-type NAD/FAD binding fold:MoeZ/MoeB
YP_004113644.1	PFAM: aminotransferase class V; KEGG: wsu:WS1189 putative aminotransferase
YP_004113645.1	KEGG: dwi:Dwil_GK11118 GK11118 gene product from transcript GK11118-RA
YP_004113646.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: pol:Bpro_0315 filamentation induced by cAMP protein Fic
YP_004113647.1	KEGG: aoe:Clos_2297 hypothetical protein
YP_004113648.1	KEGG: syp:SYNPCC7002_A1133 hypothetical protein
YP_004113649.1	KEGG: dat:HRM2_00150 transposase for insertion sequence 801 (transposase 32 family protein)
YP_004113650.1	PFAM: integrase family protein; KEGG: dat:HRM2_44450 XerD4
YP_004113651.1	TIGRFAM: prevent-host-death family protein; KEGG: aeh:Mlg_2562 prevent-host-death family protein
YP_004113652.1	SMART: PDZ/DHR/GLGF domain protein; KEGG: pen:PSEEN2126 hypothetical protein
YP_004113653.1	PFAM: HNH endonuclease; KEGG: avn:Avin_48770 hypothetical protein
YP_004113654.1	TIGRFAM: prevent-host-death family protein; KEGG: aeh:Mlg_2562 prevent-host-death family protein
YP_004113655.1	KEGG: aeh:Mlg_2563 plasmid stabilization system protein; manually curated; PFAM: plasmid stabilization system
YP_004113656.1	KEGG: dak:DaAHT2_0338 PepSY-associated TM helix domain protein
YP_004113657.1	KEGG: bfo:BRAFLDRAFT_85871 hypothetical protein
YP_004113658.1	KEGG: dak:DaAHT2_2674 type IV pilus assembly PilZ
YP_004113659.1	KEGG: dap:Dacet_0900 heat shock protein HSP90; PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_004113660.1	TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: gme:Gmet_0923 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase
YP_004113661.1	TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; KEGG: pmr:PMI0010 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein
YP_004113662.1	KEGG: mes:Meso_0679 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70
YP_004113663.1	PFAM: GrpE protein; KEGG: ddf:DEFDS_2115 molecular chaperone GrpE
YP_004113664.1	KEGG: geo:Geob_1105 heat-inducible transcription repressor HrcA; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like
YP_004113665.1	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: ddf:DEFDS_0208 O-acetylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein
YP_004113666.1	PFAM: protein of unknown function DUF520; KEGG: dde:Dde_2479 putative nucleotide-binding protein
YP_004113667.1	KEGG: gbm:Gbem_0258 iron-sulfur cluster-binding protein
YP_004113668.1	PFAM: nitroreductase; KEGG: ppd:Ppro_0777 nitroreductase
YP_004113669.1	PFAM: protein of unknown function DUF81; KEGG: aeh:Mlg_1090 hypothetical protein
YP_004113670.1	KEGG: tgr:Tgr7_0177 sucrose synthase; PFAM: glycosyl transferase group 1
YP_004113671.1	KEGG: tgr:Tgr7_0708 sucrose-phosphate synthase; TIGRFAM: sucrose-phosphate synthase; HAD-superfamily hydrolase, subfamily IIB; Sucrose-phosphate phosphatase subfamily; PFAM: sucrose-6F-phosphate phosphohydrolase; glycosyl transferase group 1
YP_004113672.1	PFAM: PfkB domain protein; KEGG: noc:Noc_3070 PfkB family of carbohydrate kinase
YP_004113673.1	KEGG: pau:PA14_41830 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_004113674.1	KEGG: sse:Ssed_0741 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; regulatory protein ArsR
YP_004113675.1	KEGG: dak:DaAHT2_2098 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_004113676.1	TIGRFAM: nicotinate phosphoribosyltransferase; KEGG: bmj:BMULJ_01038 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like
YP_004113677.1	PFAM: isochorismatase hydrolase; KEGG: bbr:BB1959 hypothetical protein
YP_004113678.1	PFAM: major facilitator superfamily MFS_1; KEGG: alv:Alvin_2880 major facilitator superfamily MFS_1
YP_004113679.1	PFAM: protein of unknown function DUF81; KEGG: dma:DMR_18860 hypothetical membrane protein
YP_004113680.1	KEGG: hha:Hhal_2064 ThiS, thiamine-biosynthesis
YP_004113681.1	KEGG: hha:Hhal_2065 hypothetical protein
YP_004113682.1	KEGG: gme:Gmet_2566 hypothetical protein
YP_004113683.1	PFAM: domain of unknown function DUF1732; YicC-like domain-containing protein; KEGG: dal:Dalk_1930 YicC domain protein
YP_004113684.1	SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: dze:Dd1591_4145 guanylate kinase; PFAM: guanylate kinase
YP_004113685.1	KEGG: abo:ABO_0177 DNA-directed RNA polymerase, omega subunit; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6
YP_004113686.1	TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: ate:Athe_1037 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein
YP_004113687.1	KEGG: lch:Lcho_0372 phage SPO1 DNA polymerase-related protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily
YP_004113688.1	PFAM: MOSC domain containing protein; KEGG: toc:Toce_0276 molybdenum cofactor synthesis domain protein
YP_004113689.1	TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; response regulator receiver; GGDEF domain containing protein; KEGG: sua:Saut_0084 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; response regulator receiver; GGDEF domain containing protein
YP_004113690.1	KEGG: tna:CTN_1787 7-cyano-7-deazaguanine reductase; TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase
YP_004113691.1	KEGG: glo:Glov_0625 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_004113692.1	PFAM: protein of unknown function DUF52; KEGG: dvm:DvMF_1326 protein of unknown function DUF52
YP_004113693.1	PFAM: heat shock protein Hsp20; KEGG: gbm:Gbem_0603 heat shock protein Hsp20
YP_004113694.1	SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: gur:Gura_0691 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein
YP_004113695.1	PFAM: Protein of unknown function DUF2062; KEGG: gbm:Gbem_3780 uncharacterized protein-like protein
YP_004113696.1	KEGG: dak:DaAHT2_2396 ATP-binding protein
YP_004113697.1	KEGG: ddf:DEFDS_1703 hypothetical protein; PFAM: CheW domain protein; SMART: CheW domain protein
YP_004113698.1	KEGG: aar:Acear_0387 Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein
YP_004113699.1	KEGG: chy:CHY_1578 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor 3-like
YP_004113700.1	KEGG: pca:Pcar_1420 ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35
YP_004113701.1	KEGG: dol:Dole_3041 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20
YP_004113702.1	KEGG: pca:Pcar_1422 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein
YP_004113703.1	KEGG: mxa:MXAN_3595 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit
YP_004113704.1	KEGG: cth:Cthe_0927 condensin subunit Smc
YP_004113705.1	PFAM: protein of unknown function DUF710; KEGG: nde:NIDE3725 putative cell division protein ZapA
YP_004113706.1	KEGG: cob:COB47_1297 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase
YP_004113707.1	TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; KEGG: gct:GC56T3_2254 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; KH domain protein
YP_004113708.1	PFAM: MOSC domain containing protein; KEGG: reh:H16_A1916 MOSC domain-containing protein
YP_004113709.1	KEGG: gme:Gmet_0334 nitrate transporter; TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1
YP_004113710.1	PFAM: major facilitator superfamily MFS_1; KEGG: gme:Gmet_0333 major facilitator transporter
YP_004113711.1	KEGG: gme:Gmet_1022 respiratory nitrate reductase subunit gamma; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit
YP_004113712.1	KEGG: acp:A2cp1_1777 nitrate reductase molybdenum cofactor assembly chaperone; TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: TorD-like chaperone
YP_004113713.1	TIGRFAM: nitrate reductase, beta subunit; KEGG: acp:A2cp1_1778 nitrate reductase, beta subunit
YP_004113714.1	TIGRFAM: nitrate reductase, alpha subunit; KEGG: acp:A2cp1_1779 nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region
YP_004113715.1	KEGG: msv:Mesil_0251 cytochrome c class I
YP_004113716.1	PFAM: protein of unknown function DUF1007; KEGG: ppd:Ppro_3679 ABC-type uncharacterized transport system periplasmic component-like protein
YP_004113717.1	PFAM: high-affinity nickel-transporter; KEGG: sdl:Sdel_2047 high-affinity nickel-transporter
YP_004113718.1	KEGG: plt:Plut_0344 two component fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase
YP_004113719.1	KEGG: drt:Dret_0078 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_004113720.1	KEGG: tkm:TK90_2098 heavy metal efflux pump, CzcA family
YP_004113721.1	KEGG: ang:An08g00180 hypothetical protein
YP_004113722.1	KEGG: tye:THEYE_A0377 hypothetical protein
YP_004113723.1	KEGG: ele:Elen_0589 hypothetical protein
YP_004113724.1	TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: gsu:GSU0610 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain
YP_004113725.1	KEGG: dap:Dacet_1784 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH
YP_004113726.1	KEGG: ddf:DEFDS_1224 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase-like; fumarate lyase
YP_004113727.1	KEGG: hha:Hhal_2334 YfaZ family protein
YP_004113728.1	PFAM: peptidase M16 domain protein; KEGG: syp:SYNPCC7002_A0083 processing protease
YP_004113729.1	KEGG: aca:ACP_1375 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein
YP_004113730.1	TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: tjr:TherJR_0828 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein
YP_004113731.1	PFAM: response regulator receiver; KEGG: ddf:DEFDS_0166 hypothetical protein
YP_004113732.1	TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dak:DaAHT2_1050 deoxyguanosinetriphosphate triphosphohydrolase; SMART: metal-dependent phosphohydrolase HD region
YP_004113733.1	TIGRFAM: aconitate hydratase 2; KEGG: gur:Gura_1939 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; PFAM: Aconitase B; aconitate hydratase domain-containing protein
YP_004113734.1	KEGG: amc:MADE_00991 dTDP-glucose 4,6 dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004113735.1	TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: sun:SUN_1715 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase
YP_004113736.1	TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: sun:SUN_1716 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related
YP_004113737.1	KEGG: cts:Ctha_2064 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase
YP_004113738.1	TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: sua:Saut_1509 mannose-1-phosphate guanylyltransferase (GDP); mannose-6-phosphate isomerase, type 2; PFAM: Nucleotidyl transferase; mannose-6-phosphate isomerase type II
YP_004113739.1	PFAM: glycosyl transferase family 2; KEGG: dak:DaAHT2_0369 glycosyl transferase family 2
YP_004113740.1	PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3795 glycosyl transferase family protein
YP_004113741.1	PFAM: glycosyl transferase family 2; KEGG: hya:HY04AAS1_1577 glycosyl transferase family 2
YP_004113742.1	PFAM: glycosyl transferase group 1; KEGG: dak:DaAHT2_0374 glycosyl transferase group 1
YP_004113743.1	PFAM: Methyltransferase type 11; KEGG: glo:Glov_3377 methyltransferase type 11
YP_004113744.1	KEGG: cyt:cce_1406 DegT/DnrJ/EryC1/StrS aminotransferase family protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase
YP_004113745.1	KEGG: mag:amb0070 Fe-S oxidoreductase
YP_004113746.1	PFAM: polysaccharide biosynthesis protein; KEGG: dak:DaAHT2_0379 polysaccharide biosynthesis protein
YP_004113747.1	KEGG: dol:Dole_2418 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat
YP_004113748.1	KEGG: acp:A2cp1_3119 hypothetical protein
YP_004113749.1	KEGG: gem:GM21_3513 hypothetical protein
YP_004113751.1	KEGG: gur:Gura_0989 hypothetical protein
YP_004113752.1	KEGG: dak:DaAHT2_2271 hypothetical protein
YP_004113753.1	KEGG: dak:DaAHT2_2270 hypothetical protein
YP_004113754.1	manually curated; KEGG: mma:MM_3343 transposase
YP_004113755.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; response regulator receiver; KEGG: pmy:Pmen_4313 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver
YP_004113756.1	KEGG: pmy:Pmen_4314 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004113757.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: cja:CJA_3354 GGDEF domain protein; SMART: GGDEF domain containing protein; response regulator receiver
YP_004113758.1	KEGG: hch:HCH_04142 chemotaxis protein histidine kinase-like kinase; PFAM: Hpt domain protein; response regulator receiver; SMART: Hpt domain protein
YP_004113759.1	KEGG: mgm:Mmc1_2863 hypothetical protein
YP_004113760.1	KEGG: dap:Dacet_0049 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain-containing protein; glycosyl transferase group 1
YP_004113761.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: sfu:Sfum_3863 filamentation induced by cAMP protein Fic
YP_004113762.1	KEGG: wsu:WS0936 hypothetical protein
YP_004113763.1	PFAM: Polysulphide reductase NrfD; KEGG: wsu:WS0937 hypothetical protein
YP_004113764.1	PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; KEGG: wsu:WS0938 TtrA
YP_004113765.1	KEGG: ant:Arnit_0555 winged helix family two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver
YP_004113766.1	KEGG: dap:Dacet_2015 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_004113767.1	KEGG: cvi:CV_0031 methyl-accepting chemotaxis protein II; PFAM: chemotaxis sensory transducer; ammonium transporter; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein
YP_004113768.1	TIGRFAM: hydroxyacylglutathione hydrolase; KEGG: hoh:Hoch_5360 hydroxyacylglutathione hydrolase
YP_004113769.1	KEGG: sun:SUN_0978 L-isoaspartyl protein carboxyl methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004113770.1	KEGG: csa:Csal_0465 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein
YP_004113771.1	PFAM: CutA1 divalent ion tolerance protein; KEGG: dal:Dalk_3429 CutA1 divalent ion tolerance protein
YP_004113772.1	KEGG: xal:XALc_0879 hypothetical protein
YP_004113773.1	KEGG: dol:Dole_1228 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YP_004113774.1	KEGG: dvm:DvMF_0822 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein
YP_004113775.1	PFAM: protein of unknown function DUF181; KEGG: etr:ETAE_2180 hypothetical protein
YP_004113776.1	KEGG: gsu:GSU3368 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
YP_004113777.1	PFAM: class II aldolase/adducin family protein; KEGG: tjr:TherJR_2057 class II aldolase/adducin family protein
YP_004113778.1	PFAM: acylphosphatase; KEGG: afu:AF0818 acylphosphatase
YP_004113779.1	KEGG: gla:GL50803_41288 Mucin-like protein
YP_004113780.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; KEGG: dar:Daro_2378 PAS; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein
YP_004113781.1	manually curated; KEGG: pol:Bpro_4964 transposase
YP_004113782.1	KEGG: dvm:DvMF_2107 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004113783.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: ana:alr1229 two-component sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein
YP_004113784.1	KEGG: ava:Ava_0649 response regulator receiver signal transduction histidine kinase; PFAM: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein
YP_004113785.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: naz:Aazo_0462 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_004113786.1	KEGG: cps:CPS_0478 hypothetical protein
YP_004113787.1	TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: afr:AFE_1390 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; SMART: AAA ATPase
YP_004113788.1	TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: aha:AHA_3029 cysteine/glutathione ABC transporter membrane/ATP-binding component; SMART: AAA ATPase
YP_004113789.1	KEGG: pag:PLES_01291 putative alkylphosphonate uptake protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein
YP_004113790.1	KEGG: drt:Dret_0892 A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein
YP_004113791.1	PFAM: UvrD/REP helicase; KEGG: noc:Noc_0988 UvrD/REP helicase
YP_004113792.1	TIGRFAM: putative DNA repair protein; KEGG: nwa:Nwat_2049 putative DNA repair protein
YP_004113793.1	manually curated; KEGG: pol:Bpro_4964 transposase
YP_004113794.1	KEGG: dde:Dde_2627 hypothetical protein
YP_004113795.1	PFAM: Protein of unknown function DUF2219; KEGG: tbd:Tbd_1279 hypothetical protein
YP_004113796.1	PFAM: outer membrane efflux protein; KEGG: aeh:Mlg_0651 outer membrane efflux protein
YP_004113797.1	KEGG: tkm:TK90_1920 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein
YP_004113798.1	KEGG: maq:Maqu_3456 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein
YP_004113799.1	PFAM: regulatory protein TetR; KEGG: plm:Plim_0557 regulatory protein TetR
YP_004113800.1	PFAM: formate/nitrite transporter; KEGG: gsu:GSU0234 FNT family protein
YP_004113801.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; CHASE4 domain protein; GAF domain protein; KEGG: dde:Dde_1360 GAF sensor hybrid histidine kinase; SMART: PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; ATP-binding region ATPase domain protein
YP_004113802.1	KEGG: dal:Dalk_0589 radical SAM domain protein; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_004113803.1	PFAM: CheC domain protein; KEGG: ddf:DEFDS_0111 hypothetical protein
YP_004113804.1	TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; ATP-binding region ATPase domain protein; KEGG: glo:Glov_0595 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein
YP_004113805.1	PFAM: Methyltransferase type 12; KEGG: sun:SUN_0643 tellurite resistance protein TehB
YP_004113806.1	KEGG: lba:Lebu_1253 hypothetical protein
YP_004113807.1	KEGG: dth:DICTH_0124 hypothetical protein
YP_004113808.1	KEGG: glo:Glov_1037 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase
YP_004113809.1	KEGG: glo:Glov_1036 cobalamin synthesis protein P47K
YP_004113810.1	PFAM: Domain of unknown function DUF1858; KEGG: glo:Glov_1035 hypothetical protein
YP_004113811.1	KEGG: glo:Glov_2590 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Cache type 2 domain protein; SMART: ATP-binding region ATPase domain protein
YP_004113812.1	KEGG: dak:DaAHT2_2214 hypothetical protein
YP_004113813.1	PFAM: beta-lactamase; KEGG: sro:Sros_0863 hypothetical protein
YP_004113814.1	KEGG: pca:Pcar_2418 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase
YP_004113815.1	KEGG: glo:Glov_0569 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004113816.1	TIGRFAM: PAS sensor protein; PFAM: histidine kinase dimerisation/phosphoacceptor; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; ATP-binding region ATPase domain protein; KEGG: cyn:Cyan7425_3899 signal transduction histidine kinase; SMART: response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; ATP-binding region ATPase domain protein
YP_004113817.1	KEGG: mgm:Mmc1_2112 cache sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_004113818.1	TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; KEGG: pca:Pcar_2709 two component signal transduction response regulator; SMART: GGDEF domain containing protein; response regulator receiver; PAS domain containing protein
YP_004113819.1	KEGG: vap:Vapar_5179 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein
YP_004113820.1	KEGG: gsu:GSU2749 NOL1/NOP2/sun family protein; TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein
YP_004113821.1	PFAM: Patatin; surface antigen (D15); KEGG: cti:RALTA_B2273 putative esterase of the alpha-beta hydrolase superfamily, patatin-like phospholipase domain; putative exported protein
YP_004113822.1	TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: geo:Geob_1232 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein
YP_004113823.1	KEGG: efa:EF1880 hypothetical protein
YP_004113824.1	KEGG: bav:BAV0365 hypothetical protein
YP_004113825.1	KEGG: bpl:BURPS1106A_0093 hypothetical protein
YP_004113826.1	KEGG: hch:HCH_06546 hypothetical protein
YP_004113827.1	KEGG: dak:DaAHT2_2475 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase
YP_004113828.1	PFAM: ferric-uptake regulator; KEGG: gsu:GSU2809 FUR family transcriptional regulator
YP_004113829.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cpi:Cpin_1407 peptidase M20
YP_004113830.1	KEGG: gsu:GSU3325 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related
YP_004113831.1	KEGG: dak:DaAHT2_1001 AAA family ATPase
YP_004113832.1	KEGG: cli:Clim_0591 addiction module component, TIGR02574 family
YP_004113833.1	TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; KEGG: dol:Dole_2310 signal recognition particle protein; SMART: AAA ATPase
YP_004113834.1	KEGG: afl:Aflv_1764 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16
YP_004113835.1	KEGG: swo:Swol_1496 nucleic acid binding protein
YP_004113836.1	KEGG: sth:STH1469 16S rRNA processing protein; TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain protein
YP_004113837.1	TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: dap:Dacet_2278 tRNA (guanine-N1)-methyltransferase; PFAM: Protein of unknown function DUF2168; tRNA (guanine-N1-)-methyltransferase
YP_004113838.1	KEGG: dae:Dtox_1201 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19
YP_004113839.1	PFAM: protein of unknown function DUF134; KEGG: glo:Glov_2602 protein of unknown function DUF134
YP_004113840.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: sfu:Sfum_2820 dinitrogenase iron-molybdenum cofactor biosynthesis
YP_004113841.1	PFAM: protein of unknown function DUF205; KEGG: aar:Acear_1046 acyl-phosphate glycerol-3-phosphate acyltransferase
YP_004113842.1	KEGG: dap:Dacet_2949 hypothetical protein
YP_004113843.1	SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: pca:Pcar_1222 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type
YP_004113844.1	KEGG: rsk:RSKD131_4108 3'-5' exonuclease; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat
YP_004113845.1	KEGG: dap:Dacet_1162 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein
YP_004113846.1	PFAM: CheC domain protein; KEGG: met:M446_2046 CheC, inhibitor of MCP methylation
YP_004113847.1	KEGG: rfr:Rfer_1889 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver
YP_004113848.1	PFAM: protein of unknown function DUF299; KEGG: ddf:DEFDS_0531 hypothetical protein
YP_004113849.1	KEGG: dap:Dacet_1228 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein
YP_004113850.1	KEGG: cme:CMM297C hypothetical protein, conserved
YP_004113851.1	KEGG: dap:Dacet_1229 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver
YP_004113852.1	KEGG: ddf:DEFDS_0404 phosphate transport system regulator; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein
YP_004113853.1	KEGG: hch:HCH_00754 phosphate transport system regulatory protein PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein
YP_004113854.1	TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: tgr:Tgr7_2650 phosphate ABC transporter, ATP-binding protein; SMART: AAA ATPase
YP_004113855.1	KEGG: tgr:Tgr7_2651 phosphate ABC transporter, permease protein; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component
YP_004113856.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tkm:TK90_0956 binding-protein-dependent transport systems inner membrane component
YP_004113857.1	TIGRFAM: phosphate binding protein; KEGG: tgr:Tgr7_2653 ABC-type phosphate transport system, periplasmic component
YP_004113858.1	KEGG: tdn:Suden_0750 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein
YP_004113859.1	PFAM: protein of unknown function DUF541; KEGG: hch:HCH_00529 periplasmic/secreted protein
YP_004113860.1	KEGG: ppd:Ppro_0008 hypothetical protein
YP_004113861.1	KEGG: ppd:Ppro_0009 death-on-curing family protein; TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic
YP_004113862.1	KEGG: aar:Acear_0672 hypothetical protein
YP_004113863.1	KEGG: tjr:TherJR_1000 hypothetical protein
YP_004113864.1	KEGG: glo:Glov_1205 rhodanese-like protein
YP_004113865.1	PFAM: phosphate-selective porin O and P; KEGG: geo:Geob_1337 phosphate-selective porin O and P
YP_004113866.1	KEGG: glo:Glov_1165 hypothetical protein
YP_004113867.1	KEGG: geo:Geob_1343 hypothetical protein
YP_004113868.1	KEGG: gem:GM21_4117 hypothetical protein
YP_004113869.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: gbm:Gbem_4025 Rieske (2Fe-2S) domain protein
YP_004113870.1	PFAM: Cytochrome b/b6 domain; KEGG: geo:Geob_1346 cytochrome b/b6 domain protein
YP_004113871.1	KEGG: geo:Geob_1347 hypothetical protein
YP_004113872.1	KEGG: gem:GM21_4113 hypothetical protein
YP_004113873.1	SMART: Rhodanese domain protein; KEGG: dak:DaAHT2_2583 rhodanese domain protein
YP_004113874.1	KEGG: dak:DaAHT2_0417 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein
YP_004113875.1	KEGG: dak:DaAHT2_0419 4Fe-4S ferredoxin iron-sulfur binding domain protein
YP_004113876.1	PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: dak:DaAHT2_0420 molybdopterin oxidoreductase
YP_004113877.1	KEGG: dak:DaAHT2_0421 uncharacterized component of anaerobic dehydrogenase-like protein
YP_004113878.1	KEGG: dak:DaAHT2_0422 hypothetical protein
YP_004113879.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: dde:Dde_0434 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_004113880.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: ppd:Ppro_3058 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer
YP_004113881.1	KEGG: amr:AM1_5223 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase
YP_004113882.1	KEGG: ttr:Tter_1170 DNA-3-methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG)
YP_004113883.1	KEGG: htu:Htur_0491 protein of unknown function DUF255
YP_004113884.1	PFAM: Uncharacterised protein family UPF0102; KEGG: hha:Hhal_2103 hypothetical protein
YP_004113885.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: ddf:DEFDS_0833 two-component sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein
YP_004113886.1	PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dbr:Deba_0907 tetratricopeptide TPR_2 repeat protein