; oligo-analysis  -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Drosophila_melanogaster.BDGP6.34/genome/Drosophila_melanogaster.BDGP6.34_start_codons.wc -o $RSAT/public_html/data/genomes/Drosophila_melanogaster.BDGP6.34/genome/Drosophila_melanogaster.BDGP6.34_start_codon_frequencies
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Slow counting mode           
; Oligomer length              	3
; Input file                   	$RSAT/public_html/data/genomes/Drosophila_melanogaster.BDGP6.34/genome/Drosophila_melanogaster.BDGP6.34_start_codons.wc
; Input format                 	wc
; Output file                  	$RSAT/public_html/data/genomes/Drosophila_melanogaster.BDGP6.34/genome/Drosophila_melanogaster.BDGP6.34_start_codon_frequencies
; Count overlapping matches
; Counted on a single strand
; Background model             	Bernoulli
; Background estimation method 	
; Sequence type                	DNA
; Nb of sequences              	30389
; Sum of sequence lengths      	91167
; discarded residues           		 (other letters than ACGT)
; discarded occurrences        		 (contain discarded residues)
; nb possible positions        	30389
; total oligo occurrences      	30389
; alphabet size                	4
; nb possible oligomers        	64
; oligomers tested for significance	0
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	obs_freq       	observed relative frequency
;	4	occ            	observed occurrences
#seq	id	obs_freq	occ
atg	atg	0.9948007502715	30231
ctg	ctg	0.0013820790418	42
agt	agt	0.0007897594524	24
ggc	ggc	0.0004606930139	14
tga	tga	0.0003948797262	12
ggt	ggt	0.0002632531508	8
gga	gga	0.0002632531508	8
gtc	gtc	0.0002303465070	7
tgc	tgc	0.0001974398631	6
att	att	0.0001645332193	5
tgg	tgg	0.0001645332193	5
gtg	gtg	0.0001645332193	5
ttg	ttg	0.0001645332193	5
gac	gac	0.0001645332193	5
gta	gta	0.0001316265754	4
gat	gat	0.0000987199316	3
ggg	ggg	0.0000329066439	1
tgt	tgt	0.0000329066439	1
gct	gct	0.0000329066439	1
ata	ata	0.0000329066439	1
gtt	gtt	0.0000329066439	1
; Host name	n90
; Job started	2017-02-26.163930
; Job done	2017-02-26.163931
; Seconds	0.69
;	user	0.69
;	system	0.02
;	cuser	0
;	csystem	0