-- dump date 20120504_143659 -- class Genbank::CDS -- table cds_note -- id note YP_003180385.1 PFAM: ATP-binding region ATPase domain protein; transcriptional regulator TrmB; SMART: ATP-binding region ATPase domain protein; KEGG: hypothetical protein YP_003180386.1 KEGG: bbr:BB4989 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase YP_003180387.1 KEGG: bsu:BSU00020 DNA polymerase III subunit beta; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain YP_003180388.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: bha:BH0004 recombination protein F YP_003180390.1 KEGG: bha:BH0006 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein YP_003180391.1 KEGG: bcr:BCAH187_A0006 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_003180392.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: bha:BH2936 hypothetical protein YP_003180393.1 PFAM: protein of unknown function DUF151; KEGG: sfu:Sfum_0418 protein of unknown function DUF151 YP_003180394.1 KEGG: pcr:Pcryo_2410 hypothetical protein YP_003180395.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: pha:PSHAa2629 DNA-J like membrane chaperone protein YP_003180396.1 TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: sat:SYN_00939 GTP-binding protein TypA/BipA YP_003180397.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: glo:Glov_0699 PpiC-type peptidyl-prolyl cis- trans isomerase YP_003180398.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce8517 ABC transporter, ATP-binding protein YP_003180399.1 PFAM: Ricin B lectin; KEGG: similar to 29-kDa galactose-binding lectin YP_003180400.1 KEGG: pen:PSEEN2480 hypothetical protein YP_003180401.1 KEGG: mag:amb3422 hypothetical protein YP_003180403.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dvm:DvMF_2265 transcriptional regulator, MarR family YP_003180405.1 TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: bsu:BSU40910 30S ribosomal protein S6 YP_003180406.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: rpi:Rpic_0277 single-strand binding protein YP_003180407.1 TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: sat:SYN_00643 SSU ribosomal protein S18P YP_003180408.1 TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: cak:Caul_2510 50S ribosomal protein L9 YP_003180409.1 KEGG: dvu:DVU0959 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase YP_003180410.1 PFAM: metallophosphoesterase; KEGG: scl:sce7166 DNA repair exonuclease family protein YP_003180411.1 KEGG: dvl:Dvul_2892 hypothetical protein YP_003180412.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: atc:AGR_C_418 hypothetical protein YP_003180413.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: vvy:VV1562 AraC-type DNA-binding domain- containing protein YP_003180414.1 PFAM: Auxin Efflux Carrier; KEGG: apa:APP7_0949 hypothetical protein YP_003180415.1 PFAM: Amidohydrolase 3; amidohydrolase; KEGG: bcb:BCB4264_A4752 hypothetical protein YP_003180416.1 PFAM: arginine biosynthesis protein ArgJ; KEGG: gbe:GbCGDNIH1_0624 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_003180417.1 PFAM: Auxin Efflux Carrier; KEGG: apa:APP7_0949 hypothetical protein YP_003180418.1 KEGG: gsu:GSU3308 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_003180419.1 KEGG: vpa:VP2898 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201 YP_003180420.1 KEGG: sat:SYN_01802 coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003180421.1 PFAM: GLUG domain protein; KEGG: cvi:CV_1471 adhesin YP_003180425.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: dol:Dole_1408 type II secretion system protein E YP_003180426.1 KEGG: twitching motility protein ; K02669 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_003180427.1 PFAM: type II secretion system protein; KEGG: dal:Dalk_1782 type II secretion system protein YP_003180428.1 KEGG: aci:ACIAD3315 pilin like competence factor YP_003180429.1 PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: glo:Glov_2160 peptidase A24A domain protein YP_003180430.1 KEGG: gbm:Gbem_1546 type IV pilus assembly protein PilM YP_003180433.1 KEGG: dds:Ddes_2268 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; SMART: GGDEF domain containing protein; extracellular solute-binding protein family 3 YP_003180434.1 KEGG: rpd:RPD_2508 hypothetical protein YP_003180435.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dde:Dde_2177 twin arginine-targeting protein translocase YP_003180436.1 PFAM: regulatory protein TetR; KEGG: transcriptional regulator protein YP_003180437.1 KEGG: hypothetical protein; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_003180438.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: mno:Mnod_2697 RNA polymerase, sigma-24 subunit, ECF subfamily YP_003180440.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: pca:Pcar_1567 indolepyruvate oxidoreductase, alpha subunit YP_003180441.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rpe:RPE_0985 indolepyruvate ferredoxin oxidoreductase YP_003180442.1 KEGG: sal:Sala_1938 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003180443.1 KEGG: sfu:Sfum_0379 phenylacetate--CoA ligase YP_003180444.1 PFAM: AAA-4 family protein; KEGG: gur:Gura_2922 putative transcriptional regulator YP_003180445.1 KEGG: xop:PXO_03540 hypothetical protein YP_003180446.1 KEGG: xca:xccb100_4377 putative ATP-binding protein YP_003180447.1 KEGG: smt:Smal_4004 hypothetical protein YP_003180448.1 KEGG: xca:xccb100_4379 hypothetical protein YP_003180449.1 KEGG: rfr:Rfer_4437 hypothetical protein YP_003180450.1 KEGG: similar to CG18304-PA YP_003180451.1 PFAM: Na+/solute symporter; KEGG: afw:Anae109_1759 Na+ symporter YP_003180452.1 PFAM: protein of unknown function DUF218; KEGG: bcy:Bcer98_3467 hypothetical protein YP_003180453.1 PFAM: Na+/H+ antiporter NhaC; KEGG: vsa:VSAL_I2144 putative sodium/proton antiporter YP_003180454.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: gbm:Gbem_3597 flavocytochrome c YP_003180455.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pap:PSPA7_3842 putative transcriptional regulator YP_003180456.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mpo:Mpop_2319 5-formyltetrahydrofolate cyclo- ligase YP_003180457.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; Helix- turn-helix type 11 domain protein; KEGG: rbo:A1I_03475 putative transcriptional regulator YP_003180458.1 PFAM: natural resistance-associated macrophage protein; KEGG: natural resistance-associated macrophage protein YP_003180459.1 PFAM: MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: gur:Gura_2041 MgtE intracellular region YP_003180460.1 KEGG: rsc12; hypothetical protein YP_003180461.1 KEGG: pfl:PFL_4924 putative lipoprotein YP_003180462.1 KEGG: bcz:BCZK3299 ABC transporter, permease YP_003180463.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_3610 ABC transporter, ATP-binding protein YP_003180464.1 PFAM: regulatory protein TetR; KEGG: sun:SUN_1429 TetR family transcriptional regulator YP_003180466.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU33830 glycine betaine/carnitine/choline ABC transporter ATP-binding protein YP_003180467.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: hpp:HPP12_0825 osmoprotection protein YP_003180468.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_003180469.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bra:BRADO5504 putative fumarate reductase/succinate dehydrogenase flavoprotein YP_003180470.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: scl:sce1114 LysR family transcriptional regulator YP_003180471.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: scl:sce2586 putative zinc-binding hydrolase YP_003180472.1 KEGG: rce:RC1_3179 4-diphosphocytidyl-2C-methyl-D- erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase YP_003180473.1 PFAM: LemA family protein; KEGG: mmr:Mmar10_1566 LemA family protein YP_003180474.1 KEGG: reu:Reut_B5346 PAS; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_003180476.1 KEGG: hypothetical protein YP_003180477.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_003180478.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rlt:Rleg2_2742 protein of unknown function DUF6 transmembrane YP_003180479.1 PFAM: shikimate kinase; KEGG: dal:Dalk_3938 shikimate kinase YP_003180480.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: aba:Acid345_1391 twitching motility protein YP_003180485.1 PFAM: type II secretion system protein; KEGG: sfu:Sfum_0118 type II secretion system protein YP_003180486.1 PFAM: transglutaminase domain protein; Protein of unknown function DUF553; SMART: transglutaminase domain protein; KEGG: similar to kyphoscoliosis peptidase YP_003180487.1 TIGRFAM: cell wall/surface repeat protein; KEGG: mmw:Mmwyl1_0481 filamentous haemagglutinin outer membrane protein YP_003180489.1 KEGG: sat:SYN_02496 cytidylate kinase YP_003180490.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; FAD dependent oxidoreductase; KEGG: sse:Ssed_0694 fumarate reductase, flavoprotein subunit precursor YP_003180491.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: plu:plu4288 hypothetical protein YP_003180492.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: hiq:CGSHiGG_07965 putative Na+/alanine symporter YP_003180493.1 PFAM: Cna B domain protein; KEGG: bha:BH2014 hypothetical protein YP_003180494.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bcr:BCAH187_A3249 transcriptional regulator, MarR family YP_003180495.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: ade:Adeh_2304 molybdopterin oxidoreductase YP_003180496.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_0934 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003180497.1 PFAM: Polysulphide reductase NrfD; KEGG: hha:Hhal_1962 polysulphide reductase, NrfD YP_003180498.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: glo:Glov_1147 cytoplasmic chaperone TorD family protein YP_003180499.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bpt:Bpet4080 quinol dehydrogenase periplasmic component YP_003180500.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1058 ferredoxin-type protein, NapH/MauN family YP_003180501.1 PFAM: protein of unknown function DUF163; KEGG: bcy:Bcer98_3999 SPOUT methyltransferase superfamily protein YP_003180502.1 TIGRFAM: M6 family metalloprotease domain protein; KEGG: gsu:GSU3016 hypothetical protein YP_003180503.1 KEGG: hhe:HH0928 exodeoxyribonuclease LexA; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase YP_003180504.1 KEGG: bha:BH1646 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I YP_003180505.1 PFAM: amino acid-binding ACT domain protein; KEGG: cco:CCC13826_1470 hypothetical protein YP_003180506.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: csa:Csal_0062 transcriptional regulator, LuxR family YP_003180507.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: spl:Spea_0722 flavocytochrome c YP_003180508.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: slo:Shew_3181 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180509.1 KEGG: mxa:MXAN_3641 major facilitator family transporter YP_003180510.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: cco:CCC13826_0614 hypothetical protein YP_003180511.1 PFAM: Catalase domain protein; KEGG: vfm:VFMJ11_A0023 catalase YP_003180513.1 PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; KEGG: Hypothetical protein CBG11331 YP_003180514.1 KEGG: mxa:MXAN_3349 DnaJ domain protein YP_003180515.1 KEGG: glo:Glov_1455 M6 family metalloprotease domain protein YP_003180516.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: plu:plu4288 hypothetical protein YP_003180517.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dol:Dole_1455 NADH:flavin oxidoreductase/NADH oxidase YP_003180518.1 TIGRFAM: dipeptidase; PFAM: peptidase M20; KEGG: bsu:BSU29980 dipeptidase PepV YP_003180519.1 KEGG: bba:Bd0771 tyrosine specific protein phosphatase YP_003180520.1 PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: bcr:BCAH187_A5621 response regulator LytR YP_003180521.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dvl:Dvul_2946 rubrerythrin YP_003180522.1 PFAM: phosphoglucose isomerase (PGI); KEGG: rpe:RPE_3708 bifunctional transaldolase/phosoglucose isomerase YP_003180523.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: dvm:DvMF_2355 (NiFe) hydrogenase maturation protein HypF YP_003180524.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: bvi:Bcep1808_5944 hydrogenase assembly chaperone HypC/HupF YP_003180525.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: sfu:Sfum_4014 hydrogenase expression/formation protein HypD YP_003180526.1 PFAM: amidinotransferase; KEGG: rde:RD1_1472 glycine amidinotransferase YP_003180527.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: shl:Shal_0685 hypothetical protein YP_003180529.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pde:Pden_1693 major facilitator superfamily MFS_1 YP_003180530.1 PFAM: regulatory protein TetR; KEGG: cps:CPS_2264 TetR family transcriptional regulator YP_003180531.1 PFAM: amino acid permease-associated region; KEGG: ecp:ECP_1488 amino acid antiporter YP_003180532.1 TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: dds:Ddes_0045 glutamate decarboxylase YP_003180533.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcz:pE33L9_0006 transcriptional regulator YP_003180534.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna B domain protein; KEGG: bcr:BCAH187_A1056 collagen adhesin domain protein YP_003180535.1 PFAM: ThiJ/PfpI domain protein; KEGG: neu:NE2259 ThiJ/PfpI family protein YP_003180536.1 KEGG: bcu:BCAH820_0407 arginine deiminase; TIGRFAM: arginine deiminase; PFAM: amidinotransferase YP_003180537.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: shl:Shal_2879 LuxR family transcriptional regulator YP_003180538.1 PFAM: aminotransferase class I and II; aminotransferase class V; aromatic amino acid beta- eliminating lyase/threonine aldolase; KEGG: bph:Bphy_4257 aminotransferase class I and II YP_003180539.1 PFAM: amino acid permease-associated region; KEGG: bcy:Bcer98_0350 arginine/ornithine antiporter YP_003180540.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: psa:PST_0394 DNA-binding response regulator CorR YP_003180541.1 PFAM: regulatory protein TetR; KEGG: bha:BH0719 TetR/AcrR family transcriptional regulator YP_003180542.1 KEGG: bha:BH0720 hypothetical protein YP_003180543.1 KEGG: bha:BH0721 hypothetical protein YP_003180544.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: bbt:BBta_0559 Crp/FNR family transcriptional regulator YP_003180545.1 PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_2181 putative antibiotic transporter YP_003180546.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: pmr:PMI0170 anaerobic dimethyl sulfoxide reductase, molybdopterin-binding subunit YP_003180547.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vha:VIBHAR_02586 hypothetical protein YP_003180548.1 KEGG: dvm:DvMF_1610 anaerobic dimethyl sulfoxide reductase subunit C YP_003180549.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sbm:Shew185_1157 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180550.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: azo:azo3436 LuxR family DNA-binding response regulator YP_003180551.1 PFAM: natural resistance-associated macrophage protein; KEGG: pat:Patl_3815 natural resistance-associated macrophage protein YP_003180552.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: swd:Swoo_2433 appr-1-p processing domain- containing protein YP_003180553.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: dal:Dalk_4415 carboxymuconolactone decarboxylase YP_003180554.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003180555.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sbm:Shew185_1157 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180556.1 PFAM: LamB/YcsF family protein; KEGG: vei:Veis_0374 LamB/YcsF family protein YP_003180557.1 PFAM: protein of unknown function DUF1445; KEGG: psa:PST_2764 hypothetical protein YP_003180558.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; RimK domain protein ATP-grasp; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: bsu:BSU24340 acetyl-CoA carboxylase biotin carboxylase subunit YP_003180559.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: aha:AHA_3346 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_003180560.1 KEGG: bha:BH1818 hypothetical protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2 YP_003180561.1 PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: bcz:BCZK2810 hypothetical protein YP_003180562.1 PFAM: protein of unknown function DUF81; KEGG: dal:Dalk_0152 protein of unknown function DUF81 YP_003180563.1 PFAM: UspA domain protein; KEGG: bcy:Bcer98_3301 UspA domain-containing protein YP_003180564.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: bbr:BB2740 response regulatory protein YP_003180565.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: slo:Shew_3181 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180566.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: ank:AnaeK_3618 fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003180567.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bcj:BCAM1448 LuxR superfamily regulatory protein YP_003180568.1 KEGG: bca:BCE_1979 hypothetical protein YP_003180569.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_003180570.1 PFAM: amino acid permease-associated region; KEGG: pau:PA14_72710 putative transporter YP_003180571.1 PFAM: PfkB domain protein; KEGG: sed:SeD_A2488 kinase, PfkB family YP_003180572.1 KEGG: dds:Ddes_2284 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003180573.1 KEGG: bcz:BCZK0949 permease, general substrate transporter; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; CBS domain containing protein; SMART: CBS domain containing protein YP_003180574.1 KEGG: apa:APP7_1887 hypothetical protein YP_003180575.1 molecular chaperone YP_003180576.1 PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: rde:RD1_3959 putative 5-nucleotidase YP_003180577.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bpl:BURPS1106A_2249 MerR family transcriptional regulator YP_003180578.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6967 ABC transporter related YP_003180579.1 PFAM: ABC-2 type transporter; KEGG: sus:Acid_6966 ABC-2 type transporter YP_003180580.1 KEGG: pde:Pden_3937 transferase hexapeptide protein YP_003180581.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bcy:Bcer98_3132 glucose-1-dehydrogenase YP_003180582.1 TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: yen:YE1929 hypothetical protein YP_003180583.1 TIGRFAM: prevent-host-death family protein YP_003180584.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: gur:Gura_1539 putative CoA-substrate-specific enzyme activase YP_003180585.1 KEGG: sfu:Sfum_1830 CoA enzyme activase YP_003180586.1 KEGG: dal:Dalk_4850 CoA-substrate-specific enzyme activase YP_003180587.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: afr:AFE_0761 transcriptional regulator, LysR family YP_003180588.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sea:SeAg_B0609 probable pyridine nucleotide- disulfide oxidoreductase YkgC YP_003180589.1 PFAM: UspA domain protein; KEGG: bcy:Bcer98_0550 UspA domain-containing protein YP_003180590.1 PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: vok:COSY_0905 rhodanese family protein YP_003180591.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; HI0933 family protein; KEGG: slo:Shew_3112 flavocytochrome c YP_003180592.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: reh:H16_B2435 response regulator, NarL-family YP_003180593.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bmv:BMASAVP1_0279 EmrB/QacA family drug resistance transporter YP_003180594.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mno:Mnod_5969 tRNA/rRNA methyltransferase (SpoU) YP_003180595.1 PFAM: isochorismatase hydrolase; KEGG: sfu:Sfum_2641 isochorismatase hydrolase YP_003180596.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: dds:Ddes_1827 transcriptional regulator, Crp/Fnr family YP_003180597.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_003180598.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: nis:NIS_0123 hypothetical protein YP_003180600.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: bsu:BSU00580 hypothetical protein YP_003180601.1 PFAM: RelA/SpoT domain protein; KEGG: bha:BH1885 hypothetical protein YP_003180602.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: sfr:Sfri_0784 C4-dicarboxylate transporter/malic acid transport protein YP_003180603.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sus:Acid_6667 LysR family transcriptional regulator YP_003180604.1 PFAM: aldo/keto reductase; KEGG: pca:Pcar_1733 aldo/keto reductase family oxidoreductase YP_003180605.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: bha:BH0468 phosphonates transport system (phosphate-binding protein) YP_003180606.1 KEGG: bha:BH0469 phosphonates transport system; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003180607.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: maq:Maqu_3259 phosphonate ABC transporter, inner membrane subunit YP_003180608.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcb:BCB4264_A3792 phosphonate ABC transporter, permease protein YP_003180609.1 TIGRFAM: phosphonate C-P lyase system protein PhnG; KEGG: smd:Smed_4235 phosphonate metabolism PhnG YP_003180610.1 TIGRFAM: phosphonate C-P lyase system protein PhnH; KEGG: met:M446_2913 phosphonate C-P lyase system protein PhnH YP_003180611.1 PFAM: phosphonate metabolism; KEGG: xau:Xaut_1314 phosphonate metabolism YP_003180612.1 PFAM: phosphonate metabolism PhnJ; KEGG: rpa:RPA0692 phosphonate metabolism PhnJ YP_003180613.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_2293 ABC transporter related YP_003180614.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cti:RALTA_B1185 C-P (carbon-phosphorous) lyase component; membrane associated; metallo-dependent hydrolase domain YP_003180615.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_2294 phosphonate C-P lyase system protein PhnL YP_003180616.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pmr:PMI2225 metal-dependent phosphoesterase YP_003180617.1 PFAM: Citrate transporter; KEGG: bat:BAS2935 transporter, putative YP_003180618.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: smd:Smed_2979 extracellular solute-binding protein family 3 YP_003180619.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_5538 polar amino acid ABC transporter, inner membrane subunit YP_003180620.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO_1042 amino acid ABC transporter, ATP- binding protein YP_003180621.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: bcr:BCAH187_A4934 cytochrome d ubiquinol oxidase, subunit I YP_003180622.1 KEGG: acp:A2cp1_3872 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_003180623.1 KEGG: RNA-binding protein YP_003180624.1 KEGG: sun:SUN_1694 GatB/YqeY domain-containing protein YP_003180625.1 PFAM: membrane-flanked domain; KEGG: bsu:BSU04590 hypothetical protein YP_003180626.1 PFAM: membrane-flanked domain; KEGG: bsu:BSU04600 hypothetical protein YP_003180627.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: ilo:IL2439 hemolysin III-like protein YP_003180628.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: sme:SMc00240 hypothetical protein YP_003180629.1 PFAM: PspC domain protein; KEGG: cbc:CbuK_0644 stress-responsive transcriptional regulator YP_003180630.1 KEGG: jan:Jann_1769 mucin-associated surface protein YP_003180631.1 PFAM: TrkA-N domain protein; KEGG: stm:STM3409 potassium transporter peripheral membrane component YP_003180632.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sat:SYN_02618 potassium transporter peripheral membrane component YP_003180633.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: dal:Dalk_4443 succinate dehydrogenase YP_003180634.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: hsm:HSM_0781 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_003180636.1 PFAM: MOSC domain containing protein; KEGG: pca:Pcar_1967 hypothetical protein YP_003180637.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: glo:Glov_2695 adenylosuccinate lyase YP_003180638.1 KEGG: similar to One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2) YP_003180639.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gsu:GSU2145 DNA-binding response regulator YP_003180640.1 KEGG: rpi:Rpic_4210 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003180641.1 KEGG: phosphoribosylaminoimidazole- succinocarboxamide synthase; K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase YP_003180642.1 KEGG: SCN11A; sodium channel, voltage-gated, type XI, alpha ; K04843 sodium channel, voltage-gated, type XI, alpha YP_003180643.1 KEGG: dno:DNO_1110 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein YP_003180645.1 KEGG: pat:Patl_2652 hypothetical protein YP_003180646.1 KEGG: bsu:BSU18690 hypothetical protein YP_003180647.1 PFAM: major facilitator superfamily MFS_1; KEGG: bmj:BMULJ_00357 permease of the major facilitator superfamily YP_003180649.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: hch:HCH_04308 transcriptional regulator MalT YP_003180650.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: slo:Shew_3181 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180651.1 KEGG: eba:c1A39 coproporphyrinogen III oxidase YP_003180653.1 PFAM: protein of unknown function DUF322; KEGG: bha:BH2786 hypothetical protein YP_003180657.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bcz:BCZK0942 RNA polymerase factor sigma C YP_003180658.1 KEGG: sat:SYN_01004 protein involved in biosynthesis of molybdopterin YP_003180659.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bsu:BSU23380 diaminopimelate decarboxylase YP_003180660.1 PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: gme:Gmet_1629 homoserine dehydrogenase YP_003180661.1 PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; KEGG: dds:Ddes_1762 diguanylate cyclase/phosphodiesterase YP_003180663.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pmy:Pmen_2629 MarR family transcriptional regulator YP_003180665.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: hypothetical protein ; K03686 molecular chaperone DnaJ YP_003180666.1 PFAM: Heat shock protein 70; KEGG: bha:BH1346 class I heat-shock protein (chaperonin) YP_003180667.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_003180668.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sbm:Shew185_1157 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180669.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003180670.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hap:HAPS_0179 2-deoxyglucose-6-phosphatase YP_003180671.1 TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: mno:Mnod_8345 death-on-curing family protein YP_003180672.1 TIGRFAM: prevent-host-death family protein YP_003180674.1 KEGG: bha:BH2280 homoserine O-succinyltransferase; TIGRFAM: homoserine O-succinyltransferase; PFAM: homoserine O-succinyltransferase YP_003180675.1 KEGG: dds:Ddes_1040 O-acetylhomoserine/O- acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein YP_003180677.1 KEGG: hypothetical protein YP_003180678.1 PFAM: oxidoreductase molybdopterin binding; KEGG: dsh:Dshi_2981 sulfite oxidase YP_003180679.1 PFAM: oxidoreductase molybdopterin binding; KEGG: xau:Xaut_1455 oxidoreductase molybdopterin binding YP_003180680.1 KEGG: pnu:Pnuc_1487 oxidoreductase, molybdopterin binding YP_003180681.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RSc1813 transcription regulator protein YP_003180682.1 PFAM: FeoA family protein YP_003180683.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport B domain protein; KEGG: sat:SYN_02208 Fe2+ transport system protein B YP_003180684.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: csa:Csal_2914 transcriptional regulator, AraC family YP_003180685.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dal:Dalk_2553 MATE efflux family protein YP_003180686.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: bcy:Bcer98_1095 flavodoxin YP_003180687.1 KEGG: gbm:Gbem_3032 hypothetical protein YP_003180688.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce1536 AraC family transcriptional regulator YP_003180690.1 KEGG: hha:Hhal_0380 cobalt transport protein YP_003180691.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003180692.1 PFAM: regulatory protein TetR; KEGG: afw:Anae109_3241 TetR family transcriptional regulator YP_003180693.1 TIGRFAM: conserved hypothetical protein; KEGG: ecp:ECP_3823 putative ABC-transporter membrane protein YP_003180694.1 PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein YP_003180695.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003180696.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mxa:MXAN_5275 ABC transporter, permease/ATP- binding protein YP_003180697.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_1492 ABC transporter related YP_003180698.1 PFAM: iron dependent repressor; SMART: iron dependent repressor; KEGG: sus:Acid_2178 DtxR family iron dependent repressor YP_003180699.1 KEGG: plu:plu3925 hypothetical protein YP_003180700.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: hap:HAPS_1386 6-pyruvoyl tetrahydrobiopterin synthase YP_003180701.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH- dependent FMN reductase; KEGG: sfu:Sfum_2320 NAD(P)H dehydrogenase (quinone) YP_003180702.1 TIGRFAM: conserved hypothetical protein YP_003180703.1 PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein YP_003180704.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003180705.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce1536 AraC family transcriptional regulator YP_003180706.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mxa:MXAN_5275 ABC transporter, permease/ATP- binding protein YP_003180707.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A0188 ABC transporter, transmembrane region YP_003180708.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cha:CHAB381_0626 AraC family transcriptional regulator YP_003180709.1 TIGRFAM: conserved hypothetical protein; KEGG: atc:AGR_L_1206 oligopeptide transport system permease protein YP_003180710.1 PFAM: cobalt transport protein; KEGG: vpa:VPA1483 putative ABC transporter membrane- spanning permease YP_003180711.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003180712.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rso:RSc1809 ABC transporter ATP-binding protein YP_003180713.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mxa:MXAN_5275 ABC transporter, permease/ATP- binding protein YP_003180714.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003180715.1 PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein YP_003180716.1 TIGRFAM: conserved hypothetical protein YP_003180717.1 PFAM: regulatory protein TetR; KEGG: scl:sce5956 TetR/AcrR family transcriptional regulator YP_003180718.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pde:Pden_1425 ABC transporter related YP_003180719.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bph:Bphy_3357 EmrB/QacA family drug resistance transporter YP_003180720.1 KEGG: shl:Shal_0479 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003180721.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003180722.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: slo:Shew_3181 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180723.1 PFAM: plasmid stabilization system YP_003180725.1 TIGRFAM: prevent-host-death family protein; KEGG: gur:Gura_1262 prevent-host-death family protein YP_003180726.1 TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: pap:PSPA7_5005 50S ribosomal protein L13 YP_003180727.1 PFAM: ribosomal protein S9; KEGG: bcu:BCAH820_0157 ribosomal protein S9 YP_003180728.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gbm:Gbem_1244 GCN5-related N- acetyltransferase YP_003180729.1 PFAM: helix-turn-helix HxlR type; KEGG: dvm:DvMF_2974 transcriptional regulator, HxlR family YP_003180730.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: bxe:Bxe_A3617 hypothetical protein YP_003180731.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_3403 major facilitator superfamily MFS_1 YP_003180732.1 PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH1740 hypothetical protein YP_003180733.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: bxe:Bxe_A3617 hypothetical protein YP_003180734.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; alanine dehydrogenase/PNT domain protein; KEGG: pha:PSHAa0892 electron acceptor reductase/NADH oxidase, FAD binding, iron-sulfur cluster binding site YP_003180735.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: shl:Shal_2117 NADH:flavin oxidoreductase/NADH oxidase YP_003180736.1 PFAM: major facilitator superfamily MFS_1; KEGG: glo:Glov_0936 major facilitator superfamily MFS_1 YP_003180737.1 KEGG: bxe:Bxe_A3617 hypothetical protein YP_003180738.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dal:Dalk_2964 short-chain dehydrogenase/reductase SDR YP_003180739.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: pla:Plav_2089 short-chain dehydrogenase/reductase SDR YP_003180740.1 PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: aav:Aave_2790 short-chain dehydrogenase/reductase SDR YP_003180741.1 KEGG: bur:Bcep18194_B1507 hypothetical protein YP_003180742.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: bxe:Bxe_A3617 hypothetical protein YP_003180743.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: shw:Sputw3181_0556 fumarate reductase/succinate dehydrogenase flavoprotein domain- containing protein YP_003180744.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: plu:plu4288 hypothetical protein YP_003180745.1 PFAM: RelB antitoxin; KEGG: ent:Ent638_4262 bifunctional antitoxin/transcriptional repressor RelB YP_003180746.1 KEGG: aeh:Mlg_2306 PilT domain-containing protein YP_003180747.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal YP_003180748.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bur:Bcep18194_B1210 ATP-dependent transcription regulator LuxR YP_003180749.1 PFAM: N-6 DNA methylase; KEGG: spc:Sputcn32_2908 N-6 DNA methylase YP_003180750.1 PFAM: glutamine synthetase catalytic region; KEGG: gbm:Gbem_3079 glutamine synthetase catalytic region YP_003180751.1 PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_0783 major facilitator transporter YP_003180752.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sensory histidine protein kinase YP_003180753.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: aba:Acid345_0311 two component transcriptional regulator, winged helix family YP_003180754.1 KEGG: dvm:DvMF_3014 hypothetical protein YP_003180755.1 KEGG: bba:Bd0818 hypothetical protein YP_003180756.1 KEGG: dal:Dalk_4101 hypothetical protein YP_003180757.1 KEGG: cco:CCC13826_0614 hypothetical protein YP_003180758.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: aba:Acid345_0712 branched chain amino acid aminotransferase / branched chain amino acid: 2-keto-4- methylthiobutyrate aminotransferase YP_003180759.1 KEGG: scl:sce3734 putative alpha- isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_003180760.1 TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: bha:BH0639 hypothetical protein YP_003180761.1 KEGG: sse:Ssed_0588 hypothetical protein YP_003180762.1 KEGG: dol:Dole_1251 membrane protein YP_003180763.1 PFAM: regulatory protein TetR; KEGG: rme:Rmet_0351 transcriptional regulator, TetR family YP_003180764.1 PFAM: NLP/P60 protein; KEGG: bcy:Bcer98_3731 NLP/P60 protein YP_003180765.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bpa:BPP3780 acyl carrier protein phosphodiesterase YP_003180766.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dvl:Dvul_2016 metal dependent phosphohydrolase YP_003180767.1 KEGG: conserved hypothetical protein, putative amidase YP_003180768.1 PFAM: NUDIX hydrolase; KEGG: YALI0F26125p ; K01515 ADP-ribose pyrophosphatase YP_003180769.1 PFAM: Silent information regulator protein Sir2; KEGG: sat:SYN_01020 Sir2 family NAD-dependent deacetylase YP_003180770.1 PFAM: heat shock protein Hsp20; KEGG: rfr:Rfer_1537 heat shock protein HSP20 YP_003180771.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: lch:Lcho_1083 two component LuxR family transcriptional regulator YP_003180772.1 PFAM: oxidoreductase molybdopterin binding; KEGG: rme:Rmet_4891 sulfite dehydrogenase (cytochrome) subunit SorA apoprotein YP_003180773.1 PFAM: oxidoreductase molybdopterin binding; KEGG: cps:CPS_4929 oxidoreductase, molybdopterin- binding YP_003180774.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: xca:xccb100_0157 putative phosphoesterase YP_003180775.1 PFAM: carbonic anhydrase; KEGG: nmn:NMCC_0174 hypothetical protein YP_003180776.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dvl:Dvul_2946 rubrerythrin YP_003180777.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: glo:Glov_3629 ABC transporter related YP_003180778.1 PFAM: peptidase M18 aminopeptidase I; peptidase M20; KEGG: dol:Dole_2226 putative aminopeptidase 1 YP_003180779.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stm:STM0512 putative ABC transporter permease component YP_003180780.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cko:CKO_02639 hypothetical protein YP_003180781.1 PFAM: NLPA lipoprotein; KEGG: cko:CKO_02640 hypothetical protein YP_003180782.1 PFAM: sodium:neurotransmitter symporter; KEGG: hha:Hhal_2394 sodium:neurotransmitter symporter YP_003180783.1 PFAM: FMN-binding domain protein; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: vha:VIBHAR_05539 oxidoreductase YP_003180784.1 PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: mrd:Mrad2831_5514 two component LuxR family transcriptional regulator YP_003180785.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_003180786.1 PFAM: regulatory protein LysR; LysR substrate- binding; regulatory protein MarR; KEGG: rme:Rmet_1546 transcriptional regulator, LysR family YP_003180787.1 KEGG: azo:azo2395 phenylacetate--CoA ligase YP_003180788.1 KEGG: reh:H16_B0336 transcriptional regulator, LysR- family YP_003180789.1 PFAM: regulatory protein TetR; KEGG: bcz:BCZK0971 TetR family transcriptional regulator YP_003180790.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pfo:Pfl01_0291 agmatine deiminase YP_003180791.1 PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: pmu:PM0808 ornithine carbamoyltransferase YP_003180792.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpt:Bpet3502 hypothetical protein YP_003180793.1 PFAM: polysaccharide biosynthesis protein; KEGG: bcb:BCB4264_A5393 polysaccharide biosynthesis protein YP_003180794.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_00157 pyruvate:ferredoxin oxidoreductase gamma subunit YP_003180795.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: lch:Lcho_2150 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_003180796.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: sfu:Sfum_2795 thiamine pyrophosphate enzyme domain protein TPP-binding YP_003180797.1 PFAM: helix-turn-helix domain protein; KEGG: sat:SYN_00015 transcriptional regulator YP_003180798.1 PFAM: Zeta toxin family protein; KEGG: ecr:ECIAI1_4248 putative zeta toxin; poison- antidote element YP_003180799.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ppg:PputGB1_2190 LuxR family transcriptional regulator YP_003180800.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: sew:SeSA_A1601 anaerobic dimethyl sulfoxide reductase chain A YP_003180801.1 TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ecm:EcSMS35_2225 dimethylsulfoxide reductase, B subunit YP_003180802.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: asu:Asuc_1522 dimethylsulfoxide reductase chain B YP_003180803.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: msu:MS2335 twin-argninine leader-binding protein DmsD YP_003180804.1 KEGG: ecy:ECSE_1711 putative dimethyl sulfoxide reductase anchor subunit YP_003180805.1 PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: smt:Smal_0116 two component transcriptional regulator, LytTR family YP_003180807.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rpc:RPC_4931 periplasmic sensor signal transduction histidine kinase YP_003180808.1 PFAM: protein of unknown function DUF328; KEGG: rde:RD1_0358 hypothetical protein YP_003180809.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: dvl:Dvul_1861 leucyl-tRNA synthetase YP_003180811.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pca:Pcar_1087 NADH:flavin oxidoreductase YP_003180812.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003180813.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sbm:Shew185_1157 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180814.1 PFAM: protein of unknown function DUF218; KEGG: mxa:MXAN_6927 putative SanA protein YP_003180815.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: jan:Jann_1486 Asp/Glu racemase YP_003180816.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: cja:CJA_3746 transcriptional regulator, LuxR family YP_003180818.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: glo:Glov_1164 formate dehydrogenase YP_003180819.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_0934 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003180820.1 PFAM: Polysulphide reductase NrfD; KEGG: cco:CCC13826_2318 tRNA uridine 5- carboxymethylaminomethyl modification enzyme GidA YP_003180821.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: afw:Anae109_0915 two component LuxR family transcriptional regulator YP_003180823.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: glo:Glov_1164 formate dehydrogenase YP_003180824.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1163 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003180825.1 PFAM: Polysulphide reductase NrfD; KEGG: cco:CCC13826_2318 tRNA uridine 5- carboxymethylaminomethyl modification enzyme GidA YP_003180826.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hha:Hhal_0354 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_003180827.1 PFAM: Polysulphide reductase NrfD; KEGG: hha:Hhal_0355 polysulphide reductase, NrfD YP_003180828.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; KEGG: molybdopterin oxidoreductase ; K08357 tetrathionate reductase subunit A YP_003180829.1 KEGG: tgr:Tgr7_0974 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_003180831.1 KEGG: ypm:YP_0363 anaerobic dimethyl sulfoxide reductase chain C YP_003180834.1 KEGG: bcm:Bcenmc03_6355 outer membrane autotransporter; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: hydrophobic; SMART: hydrophobic YP_003180836.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bbr:BB1406 LuxR family transcriptional regulator YP_003180837.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: ecf:ECH74115_2296 anaerobic dimethyl sulfoxide reductase, A subunit YnfE YP_003180838.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pmr:PMI1706 anaerobic dimethyl sulfoxide reductase chain B YP_003180839.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: asu:Asuc_1522 dimethylsulfoxide reductase chain B YP_003180840.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: hiq:CGSHiGG_08855 twin-argninine leader- binding protein DmsD YP_003180841.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: ypm:YP_0363 anaerobic dimethyl sulfoxide reductase chain C YP_003180842.1 KEGG: dds:Ddes_2284 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein YP_003180843.1 KEGG: esa:ESA_01917 hypothetical protein YP_003180844.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vha:VIBHAR_02586 hypothetical protein YP_003180845.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: ade:Adeh_2304 molybdopterin oxidoreductase YP_003180847.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: plu:plu4288 hypothetical protein YP_003180848.1 PFAM: regulatory protein LysR; KEGG: mlo:mlr6097 nitrogen assimilation control protein YP_003180851.1 KEGG: sun:SUN_0511 hypothetical protein YP_003180852.1 KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003180853.1 KEGG: cju:C8J_0733 quinol dehydrogenase membrane component YP_003180854.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: pca:Pcar_0577 putative transposase YP_003180855.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_3549 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003180856.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tmz:Tmz1t_0392 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003180857.1 KEGG: slo:Shew_2702 hypothetical protein YP_003180859.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rso:RS04789 putative transcription regulator protein YP_003180860.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sbm:Shew185_1157 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180861.1 PFAM: protein of unknown function DUF1063; KEGG: dde:Dde_0807 hypothetical protein YP_003180862.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; FAD dependent oxidoreductase; KEGG: shl:Shal_2847 flavocytochrome c YP_003180863.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: dvm:DvMF_1879 ATP-dependent transcriptional regulator, MalT-like, LuxR family YP_003180864.1 KEGG: hne:HNE_2551 UvrD/REP helicase domain- containing protein YP_003180865.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1058 ferredoxin-type protein, NapH/MauN family YP_003180866.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: Fe-S ferredoxin-type protein YP_003180867.1 KEGG: vha:VIBHAR_01582 chaperone protein TorD YP_003180869.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gur:Gura_0473 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003180870.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rso:RS04789 putative transcription regulator protein YP_003180871.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: ank:AnaeK_1567 molybdopterin oxidoreductase YP_003180872.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vha:VIBHAR_02586 hypothetical protein YP_003180873.1 KEGG: esa:ESA_01917 hypothetical protein YP_003180874.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003180875.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: ade:Adeh_2304 molybdopterin oxidoreductase YP_003180876.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ppr:PBPRB0006 putative tetrathionate reductase, subunit B YP_003180877.1 KEGG: dvm:DvMF_2468 molybdopterin-containing oxidoreductase membrane anchor subunit YP_003180878.1 PFAM: HipA domain protein; KEGG: hpj:jhp0940 hypothetical protein YP_003180880.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: spe:Spro_0612 LuxR family transcriptional regulator YP_003180881.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: ade:Adeh_2304 molybdopterin oxidoreductase YP_003180882.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vha:VIBHAR_02586 hypothetical protein YP_003180883.1 KEGG: hha:Hhal_1962 polysulphide reductase, NrfD YP_003180884.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: reu:Reut_C6430 LysR family transcriptional regulator YP_003180885.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: ank:AnaeK_1567 molybdopterin oxidoreductase YP_003180886.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vha:VIBHAR_02586 hypothetical protein YP_003180887.1 KEGG: esa:ESA_01917 hypothetical protein YP_003180888.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: plu:plu4288 hypothetical protein YP_003180889.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: ank:AnaeK_1567 molybdopterin oxidoreductase YP_003180890.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_0934 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003180891.1 KEGG: dvm:DvMF_2468 molybdopterin-containing oxidoreductase membrane anchor subunit YP_003180892.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rso:RS04789 putative transcription regulator protein YP_003180893.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sbm:Shew185_1157 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180894.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ret:RHE_CH02708 hypothetical protein YP_003180895.1 PFAM: HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: xop:PXO_02372 putative oxygen-independent coproporphyrinogen III oxidase YP_003180896.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sfr:Sfri_3694 twin-arginine translocation pathway signal YP_003180897.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: dvm:DvMF_1023 transcriptional regulator, LuxR family YP_003180898.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: slo:Shew_3181 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180899.1 KEGG: RP1L1; retinitis pigmentosa 1-like 1 YP_003180900.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dds:Ddes_1101 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003180901.1 KEGG: gur:Gura_3626 cytochrome c family protein YP_003180902.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003180903.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bpt:Bpet0936 LuxR family transcriptional regulator YP_003180904.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: xca:xccb100_3427 peptidyl prolyl cis-trans isomerase, cyclophilin type YP_003180905.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bpt:Bpet0936 LuxR family transcriptional regulator YP_003180906.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: reu:Reut_B5790 fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal:FAD dependent oxidoreductase YP_003180907.1 KEGG: glo:Glov_0942 hypothetical protein YP_003180908.1 PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: dds:Ddes_1159 HhH-GPD family protein YP_003180909.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: vsp:VS_2444 Flp pilus assembly protein CpaB YP_003180910.1 KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like YP_003180911.1 PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: bpt:Bpet2078 putative general secretion pathway ATPase YP_003180912.1 PFAM: type II secretion system protein; KEGG: gbm:Gbem_1054 type II secretion system protein YP_003180913.1 PFAM: type II secretion system protein; KEGG: bxe:Bxe_A2794 putative tight adherence TadC related transmembrane protein YP_003180916.1 PFAM: TadE family protein; KEGG: bpt:Bpet3381 putative Flp pilus assembly protein YP_003180917.1 KEGG: ade:Adeh_0129 methyltransferase type 11 YP_003180920.1 PFAM: protein of unknown function DUF192; KEGG: bpt:Bpet2081 hypothetical protein YP_003180921.1 KEGG: similar to elastin microfibril interfacer 2 YP_003180922.1 PFAM: peptidase A24A prepilin type IV; KEGG: bte:BTH_I1134 type IV pilus prepilin peptidase PilD YP_003180925.1 PFAM: TadE family protein; KEGG: pca:Pcar_1749 Flp pilus assembly protein TadG YP_003180927.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: cak:Caul_4194 Flp pilus assembly protein CpaB YP_003180928.1 PFAM: type II secretion system protein E; KEGG: eba:ebA3705 secretion ATPase protein, type II secretion system protein E YP_003180929.1 PFAM: type II secretion system protein; KEGG: bbr:BB2099 hypothetical protein YP_003180930.1 PFAM: type II secretion system protein; KEGG: type II secretion system protein YP_003180932.1 TIGRFAM: cell wall/surface repeat protein; KEGG: outer membrane adhesin like proteiin YP_003180933.1 PFAM: YcfA family protein; KEGG: rlt:Rleg2_4059 YcfA family protein YP_003180934.1 PFAM: protein of unknown function UPF0150; KEGG: bph:Bphy_1857 hypothetical protein YP_003180935.1 KEGG: sus:Acid_1494 ABC-2 type transporter YP_003180936.1 KEGG: bce:BC1735 ABC transporter permease YP_003180937.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcr:BCAH187_A1915 ABC transporter, ATP- binding protein YP_003180938.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: smt:Smal_0257 integral membrane sensor signal transduction histidine kinase YP_003180939.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bcy:Bcer98_0214 two component LuxR family transcriptional regulator YP_003180940.1 PFAM: regulatory protein LysR; KEGG: dvl:Dvul_1572 ModE family transcriptional regulator YP_003180941.1 KEGG: hypothetical LOC586640 ; K01733 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003180942.1 TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: afe:Lferr_0167 copper-translocating P-type ATPase YP_003180943.1 PFAM: FeoA family protein; KEGG: sat:SYN_02208 Fe2+ transport system protein B YP_003180944.1 PFAM: FeoA family protein; KEGG: acp:A2cp1_3411 FeoA family protein YP_003180945.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: ppr:PBPRB1904 ferrous ion transport protein B YP_003180946.1 KEGG: hypothetical protein LOC100021312 YP_003180947.1 PFAM: iron dependent repressor; SMART: iron dependent repressor; KEGG: dps:DP2966 iron-dependent repressor YP_003180948.1 PFAM: Septum formation initiator; KEGG: bte:BTH_I2024 pseudouridine synthase family protein YP_003180949.1 PFAM: Ppx/GppA phosphatase; KEGG: ank:AnaeK_0692 Ppx/GppA phosphatase YP_003180950.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: rru:Rru_A1720 carboxymuconolactone decarboxylase YP_003180951.1 PFAM: Polyprenyl synthetase; KEGG: Polyprenyl synthetase family protein YP_003180952.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: mms:mma_3273 LuxR family DNA-binding response regulator YP_003180953.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mes:Meso_0482 fumarate reductase/succinate dehydrogenase flavoprotein-like YP_003180954.1 KEGG: aba:Acid345_2713 cytochrome b subunit of formate dehydrogenase-like YP_003180955.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mxa:MXAN_0560 penicillin-resistant dd- carboxypeptidase YP_003180956.1 KEGG: GE14975 gene product from transcript GE14975- RA YP_003180957.1 KEGG: sat:SYN_00091 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; homoaconitate hydratase family protein; 3- isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein YP_003180958.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: dal:Dalk_0180 3-isopropylmalate dehydratase, small subunit YP_003180959.1 KEGG: dvm:DvMF_1794 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003180960.1 PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; PASTA domain containing protein; KEGG: dal:Dalk_0613 penicillin-binding protein, 1A family YP_003180961.1 PFAM: peptidase U32; KEGG: predicted protein; K08303 putative protease YP_003180962.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein; KEGG: bha:BH3228 tyrosyl-tRNA synthetase YP_003180963.1 KEGG: Os09g0425200; hypothetical protein YP_003180964.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sal:Sala_2957 ECF subfamily RNA polymerase sigma-24 factor YP_003180966.1 PFAM: transcriptional regulator PadR family protein; KEGG: pca:Pcar_0584 putative transcriptional regulator, PhaQ-like YP_003180967.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: sat:SYN_01180 dinitrogenase iron-molybdenum cofactor protein YP_003180968.1 SMART: Tetratricopeptide domain protein; KEGG: afw:Anae109_3372 TPR repeat-containing protein YP_003180969.1 KEGG: acp:A2cp1_2445 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_003180970.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal YP_003180971.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: mno:Mnod_6717 transcriptional regulator, LuxR family YP_003180973.1 KEGG: rpe:RPE_2384 PilT protein-like protein YP_003180974.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: pca:Pcar_1040 aspartyl-tRNA synthetase YP_003180975.1 PFAM: Radical SAM domain protein; KEGG: gsu:GSU0244 radical SAM domain-containing protein YP_003180976.1 PFAM: SNARE associated Golgi protein; KEGG: abb:ABBFA_003391 protein DedA (protein DSG-1) YP_003180977.1 KEGG: gbm:Gbem_0212 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_003180978.1 PFAM: conserved hypothetical protein; KEGG: dol:Dole_0541 hypothetical protein YP_003180979.1 KEGG: sus:Acid_3167 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein YP_003180980.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003180981.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: acp:A2cp1_1646 molybdopterin oxidoreductase YP_003180982.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vha:VIBHAR_02586 hypothetical protein YP_003180983.1 KEGG: dvm:DvMF_1610 anaerobic dimethyl sulfoxide reductase subunit C YP_003180984.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003180985.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1058 ferredoxin-type protein, NapH/MauN family YP_003180987.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: gur:Gura_0472 cytoplasmic chaperone TorD family protein YP_003180988.1 KEGG: pcr:Pcryo_2410 hypothetical protein YP_003180989.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: dac:Daci_4815 ATP-dependent transcription regulator LuxR YP_003180990.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sbm:Shew185_1157 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003180991.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bbr:BB1406 LuxR family transcriptional regulator YP_003180992.1 PFAM: aminotransferase class V; KEGG: rru:Rru_A1068 aminotransferase, class V YP_003180993.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: eba:ebA5622 molybdenum enzyme, large subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003180994.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA5630 molybdenum enzyme, medium subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003180995.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: gbm:Gbem_1571 formate dehydrogenase family accessory protein FdhD YP_003180996.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aeh:Mlg_0217 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003180997.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_003180998.1 PFAM: protein of unknown function UPF0074; KEGG: bcr:BCAH187_A3431 rrf2 family protein YP_003180999.1 PFAM: cytochrome c biogenesis protein transmembrane region; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aba:Acid345_0180 cytochrome c biogenesis protein, transmembrane YP_003181000.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: slo:Shew_3181 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003181001.1 KEGG: ank:AnaeK_1781 hypothetical protein YP_003181002.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bph:Bphy_6164 TetR family transcriptional regulator YP_003181003.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sbm:Shew185_1157 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003181004.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003181005.1 PFAM: sugar transferase; KEGG: mes:Meso_2589 sugar transferase YP_003181006.1 PFAM: glycosyl transferase group 1; KEGG: bsu:BSU34320 hypothetical protein YP_003181007.1 PFAM: glycosyl transferase family 2; KEGG: ftm:FTM_1040 glycosyl transferase family 2 protein YP_003181008.1 PFAM: O-antigen polymerase; KEGG: hip:CGSHiEE_07660 hypothetical protein YP_003181009.1 KEGG: mmw:Mmwyl1_0836 hypothetical protein YP_003181010.1 KEGG: mxa:MXAN_2689 lipopolysaccharide biosynthesis protein; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase YP_003181011.1 KEGG: aav:Aave_0953 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003181012.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: eli:ELI_13345 lipopolysaccharide biosynthesis protein YP_003181013.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpa:BPP0125 hypothetical protein YP_003181014.1 PFAM: WbqC-like family protein; KEGG: gbm:Gbem_3729 WbqC-like family protein YP_003181015.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: cvi:CV_4125 acetyltransferase YP_003181016.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sse:Ssed_2970 DegT/DnrJ/EryC1/StrS family protein YP_003181017.1 PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: scl:sce2479 putative oligosaccharyl transferase YP_003181018.1 KEGG: bpd:BURPS668_A1004 asparagine synthase (glutamine-hydrolyzing) YP_003181019.1 KEGG: acb:A1S_0057 capsular polysaccharide synthesis enzyme YP_003181020.1 PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_4903 alpha/beta fold family hydrolase YP_003181021.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_003181022.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bha:BH1882 cytosine permease YP_003181023.1 PFAM: protein of unknown function DUF917; KEGG: bha:BH1883 hypothetical protein YP_003181024.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bha:BH1884 hydantoinase YP_003181025.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bca:BCE_1472 GntR family transcriptional regulator YP_003181026.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: sus:Acid_1595 SPFH domain-containing protein/band 7 family protein YP_003181027.1 KEGG: hypothetical protein YP_003181028.1 PFAM: oxidoreductase molybdopterin binding; KEGG: nha:Nham_3394 twin-arginine translocation pathway signal YP_003181029.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sek:SSPA1705 anaerobic dimethyl sulfoxide reductase chain B YP_003181030.1 PFAM: Polysulphide reductase NrfD; KEGG: acr:Acry_0343 polysulphide reductase, NrfD YP_003181031.1 KEGG: bcr:BCAH187_A3371 protein-tyrosine phosphatase-like protein YP_003181032.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ajs:Ajs_0743 extracellular solute-binding protein YP_003181033.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2970 amino acid ABC transporter permease YP_003181034.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_5537 ABC transporter related YP_003181035.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: dvl:Dvul_0019 YbaK/prolyl-tRNA synthetase associated region YP_003181036.1 PFAM: Phosphoglycerate mutase; KEGG: bcr:BCAH187_A3513 putative phosphoglycerate mutase YP_003181037.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gur:Gura_1536 short-chain dehydrogenase/reductase SDR YP_003181038.1 PFAM: major facilitator superfamily MFS_1; KEGG: eum:ECUMN_4826 conserved hypothetical protein mrx YP_003181039.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: atc:AGR_pAT_269 hypothetical protein YP_003181040.1 KEGG: abo:ABO_1671 hypothetical protein YP_003181041.1 catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation YP_003181042.1 PFAM: amino acid permease-associated region; KEGG: pla:Plav_1143 amino acid permease-associated region YP_003181043.1 KEGG: pla:Plav_1144 agmatine deiminase; TIGRFAM: agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase YP_003181044.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_003181045.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: bcb:BCB4264_A1678 putative MATE efflux family protein YP_003181046.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: kpe:KPK_4054 monoamine regulon transcriptional regulator YP_003181047.1 catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation YP_003181048.1 PFAM: amino acid permease-associated region; KEGG: pla:Plav_1143 amino acid permease-associated region YP_003181049.1 KEGG: pag:PLES_02881 agmatine deiminase; TIGRFAM: agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase YP_003181050.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_003181052.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bha:BH0820 two-component response regulator YP_003181053.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcu:BCAH820_0315 putative bacitracin ABC transporter, ATP-binding protein YP_003181055.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bcu:BCAH820_0297 sensor histidine kinase YP_003181056.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: bam:Bamb_6272 LysR family transcriptional regulator YP_003181057.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_2586 flavocytochrome c YP_003181058.1 KEGG: mgm:Mmc1_2162 TPR repeat-containing protein YP_003181060.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_A1517 short-chain dehydrogenase/reductase SDR YP_003181061.1 PFAM: Heptaprenyl diphosphate synthase component I; KEGG: pca:Pcar_0037 hypothetical protein YP_003181062.1 PFAM: protein of unknown function DUF1312; KEGG: tmz:Tmz1t_0772 hypothetical protein YP_003181063.1 PFAM: ApbE family lipoprotein; KEGG: bbr:BB3282 thiamine biosynthesis protein YP_003181064.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvl:Dvul_0517 ferredoxin YP_003181065.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: pca:Pcar_0265 NADH:ubiquinone oxidoreductase, RnfA subunit-like YP_003181066.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: pca:Pcar_0260 SoxR-reducing system protein RsxE YP_003181067.1 PFAM: FMN-binding domain protein; KEGG: pca:Pcar_0261 NADH:ubiquinone oxidoreductase, RnfG subunit-like YP_003181068.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pca:Pcar_0262 NADH:ubiquinone oxidoreductase, RnfD subunit-like YP_003181069.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_01664 electron transport complex protein, NADH-binding subunit YP_003181070.1 KEGG: rfr:Rfer_2515 hypothetical protein YP_003181071.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: gur:Gura_1554 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_003181072.1 KEGG: rme:Rmet_5748 protein of unknown function DUF6, transmembrane YP_003181073.1 PFAM: LytTr DNA-binding region; KEGG: bcr:BCAH187_A5380 response regulator, LytTR family YP_003181074.1 KEGG: bsu:BSU12030 hypothetical protein YP_003181075.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bha:BH3496 transcriptional regulator of multidrug-efflux transporter genes YP_003181076.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_3207 acetyl-coenzyme A synthetase YP_003181078.1 PFAM: Radical SAM domain protein; KEGG: dde:Dde_0047 elongator protein 3/MiaB/NifB YP_003181079.1 KEGG: hhe:HH1060 hypothetical protein YP_003181080.1 PFAM: transcription activator effector binding; KEGG: bba:Bd0811 AraC family transcriptional regulator YP_003181081.1 KEGG: hhe:HH1509 hypothetical protein YP_003181082.1 KEGG: bac:BamMC406_6682 type VI secretion system Vgr family protein YP_003181083.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; KEGG: bsu:BSU01070 DNA-directed RNA polymerase subunit beta YP_003181084.1 KEGG: bcy:Bcer98_0097 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 5; RNA polymerase alpha subunit domain protein; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein YP_003181085.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: prw:PsycPRwf_2319 phosphoribosyl-AMP cyclohydrolase YP_003181086.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: pca:Pcar_1001 phosphohexomutase YP_003181087.1 PFAM: Polyphosphate kinase; KEGG: bcy:Bcer98_2695 polyphosphate kinase YP_003181088.1 PFAM: Ppx/GppA phosphatase; KEGG: bcz:BCZK3752 exopolyphosphatase, Ppx/GppA phosphatase YP_003181089.1 PFAM: protein of unknown function DUF344; KEGG: hha:Hhal_1873 protein of unknown function DUF344 YP_003181091.1 TIGRFAM: sortase, SrtB family; KEGG: bha:BH3294 hypothetical protein YP_003181092.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: ade:Adeh_4206 amidophosphoribosyltransferase YP_003181093.1 KEGG: csa:Csal_2112 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003181094.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: gme:Gmet_1845 phosphoribosylglycinamide formyltransferase YP_003181095.1 KEGG: ppd:Ppro_0865 hypothetical protein YP_003181096.1 KEGG: gsu:GSU0609 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region YP_003181097.1 PFAM: Integrase catalytic region; KEGG: hha:Hhal_1303 integrase, catalytic region YP_003181098.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: hin:HI1238 heat shock protein YP_003181099.1 KEGG: psa:PST_3725 Mg2+ transport ATPase YP_003181100.1 KEGG: dds:Ddes_2315 hypothetical protein YP_003181101.1 PFAM: conserved hypothetical protein; KEGG: bxe:Bxe_A3828 hypothetical protein YP_003181102.1 KEGG: rde:RD1_2939 glycerol-3-phosphate-binding periplasmic protein precursor, putative YP_003181103.1 KEGG: bja:blr2589 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; EAL domain protein YP_003181104.1 PFAM: thioesterase superfamily protein; KEGG: bcy:Bcer98_3526 thioesterase superfamily protein YP_003181105.1 KEGG: bcb:BCB4264_A0609 two component system histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003181106.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcr:BCAH187_A0702 DNA-binding response regulator YP_003181108.1 KEGG: aba:Acid345_1830 secretion protein HlyD YP_003181109.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvy:VVA1496 peptide ABC transporter ATPase YP_003181110.1 PFAM: protein of unknown function DUF214; KEGG: dal:Dalk_4858 protein of unknown function DUF214 YP_003181111.1 KEGG: dol:Dole_0233 hypothetical protein YP_003181112.1 KEGG: dol:Dole_0232 hypothetical protein YP_003181113.1 PFAM: pentapeptide repeat protein; KEGG: vsp:VS_1190 hypothetical protein YP_003181114.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dde:Dde_2500 XRE family transcriptional regulator YP_003181115.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: she:Shewmr4_2522 ATPase central domain- containing protein YP_003181116.1 KEGG: vfm:VFMJ11_2615 hypothetical protein YP_003181119.1 KEGG: sew:SeSA_A1660 sefir domain protein YP_003181120.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_003181121.1 KEGG: cco:CCC13826_1251 diaminopimelate dehydrogenase; TIGRFAM: diaminopimelate dehydrogenase; PFAM: dihydrodipicolinate reductase YP_003181122.1 PFAM: formylmethionine deformylase; KEGG: pca:Pcar_2534 polypeptide deformylase YP_003181123.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dvu:DVU2042 Fic family protein YP_003181125.1 KEGG: dol:Dole_2113 amidophosphoribosyltransferase YP_003181126.1 PFAM: Na+/H+ antiporter NhaC; KEGG: bar:GBAA1452 Na+/H+ antiporter family protein YP_003181127.1 TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase; KEGG: bat:BAS2916 L-asparaginase YP_003181128.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: ppd:Ppro_2521 2'-5' RNA ligase YP_003181129.1 PFAM: formylmethionine deformylase; KEGG: sbp:Sbal223_2315 peptide deformylase YP_003181130.1 PFAM: Amidase; KEGG: bcr:BCAH187_A2026 amidase family protein YP_003181131.1 KEGG: nis:NIS_0354 hypothetical protein YP_003181133.1 KEGG: vfm:VFMJ11_B0190 ATPase involved in DNA repair YP_003181134.1 TIGRFAM: prevent-host-death family protein YP_003181135.1 PFAM: N-6 DNA methylase; KEGG: dvl:Dvul_0488 N-6 DNA methylase YP_003181138.1 PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: cti:RALTA_A0248 conserved hypothetical protein; putative transmembrane protein YP_003181139.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_1070 ferredoxin YP_003181141.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: mlo:mlr7684 two-component system, regulatory protein YP_003181142.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sus:Acid_5478 integral membrane sensor signal transduction histidine kinase YP_003181143.1 KEGG: dol:Dole_3138 hypothetical protein YP_003181146.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: xau:Xaut_3952 DNA binding domain-containing protein YP_003181148.1 PFAM: IstB domain protein ATP-binding protein; KEGG: hha:Hhal_0638 IstB domain protein ATP-binding protein YP_003181150.1 KEGG: hne:HNE_0385 putative DNA repair protein RecN YP_003181151.1 PFAM: TRAG family protein; KEGG: dps:DPPA13 related to plasmid transfer complex protein TrsK/TraK YP_003181154.1 KEGG: bca:BCE_A0025 hypothetical protein YP_003181155.1 PFAM: NLP/P60 protein; Mannosyl-glycoprotein endo- beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: bpy:Bphyt_2497 NLP/P60 protein YP_003181156.1 KEGG: SNF2 superfamily protein YP_003181159.1 PFAM: Cna B domain protein; KEGG: bce:BC3526 collagen adhesion protein YP_003181160.1 PFAM: peptidase C60 sortase A and B; KEGG: bha:BH3294 hypothetical protein YP_003181162.1 PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; KEGG: bbr:BB0908 putative helicase YP_003181163.1 KEGG: sat:SYN_01826 putative cytoplasmic protein YP_003181164.1 PFAM: SMC domain protein; KEGG: she:Shewmr4_1846 ATP-dependent OLD family endonuclease YP_003181165.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: apj:APJL_0655 type III restriction- modification system methyltransferase YP_003181166.1 PFAM: single-strand binding protein/Primosomal replication protein n YP_003181169.1 SMART: AAA ATPase; KEGG: bcr:BCAH187_A4023 putative prophage LambdaBa02, DNA replication protein DnaC YP_003181175.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: bsu:BSU31010 hypothetical protein YP_003181178.1 KEGG: hne:HNE_3264 hypothetical protein YP_003181180.1 KEGG: shn:Shewana3_2183 hypothetical protein YP_003181183.1 KEGG: SBAB-279G2.4; ring finger protein 1 ; K10695 E3 ubiquitin-protein ligase RNF1/2 YP_003181193.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: nis:NIS_1165 single-strand DNA binding protein YP_003181195.1 KEGG: xac:XACa0041 partition protein A YP_003181198.1 KEGG: intermediate dynein chain ; K11143 dynein intermediate chain 2, axonemal YP_003181199.1 KEGG: bbt:BBta_7837 putative methyl-accepting chemotaxis protein (MCP) YP_003181202.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: hsm:HSM_1190 relaxase/mobilization nuclease family protein YP_003181203.1 KEGG: hypothetical protein YP_003181206.1 PFAM: glycosyl transferase family 2; KEGG: pol:Bpro_5439 glycosyl transferase, family 2 YP_003181207.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sun:SUN_1216 hypothetical protein YP_003181208.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: par:Psyc_0189 hypothetical protein YP_003181209.1 PFAM: Domain of unknown function DUF1814; KEGG: pmr:PMI2316 hypothetical protein YP_003181210.1 KEGG: pmr:PMI2492 hypothetical protein YP_003181214.1 KEGG: hne:HNE_0290 hypothetical protein YP_003181215.1 KEGG: dol:Dole_0232 hypothetical protein YP_003181226.1 KEGG: scl:sce_pseudo_13 pseudogene YP_003181232.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; KEGG: ajs:Ajs_1578 helicase domain-containing protein YP_003181236.1 KEGG: met:M446_6067 hypothetical protein YP_003181240.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: afw:Anae109_1193 helix-turn-helix domain- containing protein YP_003181241.1 PFAM: protein of unknown function DUF192; KEGG: afr:AFE_2872 hypothetical protein YP_003181242.1 PFAM: type II secretion system protein; KEGG: dvl:Dvul_1107 type II secretion system protein YP_003181243.1 PFAM: type II secretion system protein; KEGG: mlo:mll0894 integral membrane protein YP_003181244.1 PFAM: type II secretion system protein E; KEGG: hne:HNE_1153 type II/IV secretion system protein YP_003181245.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bmj:BMULJ_01048 ribonuclease YP_003181247.1 PFAM: TadE family protein; KEGG: hypothetical protein YP_003181248.1 PFAM: TadE family protein; KEGG: sal:Sala_1101 TadE-like protein YP_003181249.1 KEGG: GK24884 gene product from transcript GK24884- RA YP_003181251.1 KEGG: reh:H16_A0723 hypothetical membrane protein YP_003181252.1 KEGG: acp:A2cp1_3001 hypothetical protein YP_003181263.1 KEGG: rpe:RPE_3637 methyl-accepting chemotaxis sensory transducer YP_003181264.1 KEGG: GH10507 gene product from transcript GH10507- RA YP_003181266.1 KEGG: cco:CCC13826_0614 hypothetical protein YP_003181267.1 KEGG: YALI0C11165p YP_003181269.1 TIGRFAM: prevent-host-death family protein YP_003181270.1 KEGG: bha:BH3294 hypothetical protein YP_003181271.1 PFAM: Cna B domain protein; KEGG: bce:BC0887 collagen adhesion protein YP_003181272.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: plu:plu3590 hypothetical protein YP_003181273.1 KEGG: sus:Acid_7732 DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003181274.1 KEGG: chromodomain helicase DNA binding protein ; K11367 chromodomain-helicase-DNA-binding protein 1 YP_003181275.1 KEGG: scl:sce5238 hypothetical protein YP_003181276.1 KEGG: bca:BCE_A0025 hypothetical protein YP_003181280.1 PFAM: TRAG family protein; KEGG: dps:DPPA13 related to plasmid transfer complex protein TrsK/TraK YP_003181283.1 TIGRFAM: DNA binding domain protein, excisionase family YP_003181287.1 PFAM: integrase family protein; KEGG: bcb:BCB4264_A2589 DNA integration/recombination/invertion protein YP_003181288.1 KEGG: nma:NMA0588 putative integrase/recombinase YP_003181289.1 KEGG: mes:Meso_0543 DNA methylase N-4/N-6 YP_003181290.1 PFAM: type III restriction protein res subunit; KEGG: mes:Meso_0544 type III restriction enzyme, res subunit YP_003181292.1 KEGG: nis:NIS_0354 hypothetical protein YP_003181294.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: sbc:SbBS512_0031 nickase YP_003181296.1 PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: acp:A2cp1_4509 ParB-like partition protein YP_003181297.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mag:amb0004 ATPase involved in chromosome partitioning YP_003181298.1 PFAM: protein of unknown function UPF0102; KEGG: dal:Dalk_4642 protein of unknown function UPF0102 YP_003181300.1 PFAM: integrase family protein; KEGG: hso:HS_0424 phage integrase YP_003181302.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: hso:HS_0422 transcriptional regulator YP_003181303.1 TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; ExsB family protein; glutamine amidotransferase class-I; KEGG: bha:BH0607 bifunctional GMP synthase/glutamine amidotransferase protein YP_003181304.1 KEGG: par:Psyc_0565 hypothetical protein YP_003181306.1 PFAM: Bacitracin resistance protein BacA; KEGG: rme:Rmet_2705 undecaprenyl pyrophosphate phosphatase YP_003181307.1 PFAM: Auxin Efflux Carrier; KEGG: rpc:RPC_4586 auxin efflux carrier YP_003181308.1 PFAM: Chorismate mutase; KEGG: aba:Acid345_1161 chorismate mutase YP_003181309.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: sus:Acid_7885 3-deoxy-D-arabinoheptulosonate- 7-phosphate synthase YP_003181310.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: bce:BC0803 sodium-dependent phosphate transporter YP_003181311.1 PFAM: UvrD/REP helicase; KEGG: bcr:BCAH187_A0377 ATP-dependent DNA helicase PcrA YP_003181312.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: dde:Dde_1644 DegV family protein YP_003181313.1 TIGRFAM: L-serine dehydratase, iron-sulfur- dependent, alpha subunit; L-serine dehydratase, iron- sulfur-dependent, beta subunit; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; amino acid-binding ACT domain protein; KEGG: bcb:BCB4264_A2483 L-serine dehydratase, iron- sulfur-dependent, alpha subunit YP_003181314.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_003181315.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: bcr:BCAH187_A5392 transcriptional regulator, LysR family YP_003181317.1 PFAM: nitroreductase; KEGG: sat:SYN_01293 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase YP_003181318.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: bcy:Bcer98_2841 peptidase T-like protein YP_003181319.1 TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: pca:Pcar_0696 30S ribosomal protein S12 YP_003181320.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: bcy:Bcer98_0100 30S ribosomal protein S7 YP_003181321.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: gme:Gmet_0623 elongation factor G YP_003181322.1 TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: gbm:Gbem_0932 ribosomal protein S10 YP_003181323.1 PFAM: ribosomal protein L3; KEGG: bha:BH0134 50S ribosomal protein L3 YP_003181324.1 PFAM: ribosomal protein L4/L1e; KEGG: bha:BH0135 50S ribosomal protein L4 YP_003181325.1 PFAM: Ribosomal protein L25/L23; KEGG: bcy:Bcer98_0106 50S ribosomal protein L23 YP_003181326.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: bcb:BCB4264_A3260 putative D-3- phosphoglycerate dehydrogenase YP_003181327.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: gme:Gmet_1908 bacterioferritin YP_003181328.1 PFAM: protein of unknown function DUF28; KEGG: ppr:PBPRA1113 hypothetical protein YP_003181329.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: eca:ECA0910 putative flavoprotein subunit of a reductase YP_003181330.1 KEGG: dal:Dalk_0727 transcriptional regulator, TetR family YP_003181331.1 PFAM: Amidohydrolase 3; KEGG: mrd:Mrad2831_4051 amidohydrolase 3 YP_003181332.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: vha:VIBHAR_05152 protein-glutamate methylesterase YP_003181333.1 KEGG: hne:HNE_0145 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_003181334.1 KEGG: psb:Psyr_1409 Holliday junction DNA helicase motor protein; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; SMART: Helix-hairpin-helix DNA-binding class 1 YP_003181335.1 KEGG: sfu:Sfum_0993 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003181337.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003181338.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sbm:Shew185_1157 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003181339.1 KEGG: hypothetical protein YP_003181340.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gme:Gmet_1266 cold-shock DNA-binding protein family protein YP_003181341.1 TIGRFAM:S-adenosylmethionine/tRNA- ribosyltransferase -isomerase; PFAM: Queuosine biosynthesis protein; KEGG: tgr:Tgr7_2069 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_003181342.1 PFAM: protein of unknown function DUF208; KEGG: dvm:DvMF_2375 protein of unknown function DUF208 YP_003181343.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pca:Pcar_2947 HAD superfamily hydrolase YP_003181344.1 KEGG: gbm:Gbem_2435 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA- guanine transglycosylase, various specificities; PFAM: Queuine/other tRNA-ribosyltransferase YP_003181345.1 TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: bsu:BSU27650 bifunctional preprotein translocase subunit SecD/SecF YP_003181346.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ilo:IL0182 transcriptional regulator NarL YP_003181347.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: slo:Shew_3181 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003181348.1 KEGG: gbm:Gbem_3597 flavocytochrome c YP_003181349.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: ank:AnaeK_3618 fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003181350.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: plu:plu4288 hypothetical protein YP_003181351.1 PFAM: C4-dicarboxylate anaerobic carrier; KEGG: ppr:PBPRA2745 hypothetical protein YP_003181352.1 KEGG: nar:Saro_2348 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003181353.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rso:RS04789 putative transcription regulator protein YP_003181356.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcj:BCAL3076A putative DNA-binding protein YP_003181357.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sew:SeSA_B0050 NimC/NimA family protein YP_003181358.1 PFAM: cobalt transport protein; KEGG: bsu:BSU01470 hypothetical protein YP_003181359.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bce:BC0161 cobalt transporter ATP-binding subunit YP_003181360.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0133 cobalt transporter ATP- binding subunit YP_003181361.1 KEGG: bcr:BCAH187_A1643 hypothetical protein YP_003181362.1 KEGG: kpe:KPK_1533 hypothetical protein YP_003181363.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dde:Dde_2852 amino acid carrier protein YP_003181364.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_003181366.1 KEGG: glo:Glov_3625 flavocytochrome c YP_003181367.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: mgm:Mmc1_1580 molybdopterin oxidoreductase YP_003181368.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA5630 molybdenum enzyme, medium subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003181369.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: plu:plu4288 hypothetical protein YP_003181370.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sde:Sde_3703 two component transcriptional regulator YP_003181371.1 KEGG: gsu:GSU1302 sensor histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003181372.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: spe:Spro_2922 molybdopterin oxidoreductase YP_003181373.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pmr:PMI0169 anaerobic dimethyl sulfoxide reductase chain b (dmso reductase iron-sulfur subunit) YP_003181374.1 PFAM: oxidoreductase molybdopterin binding; KEGG: bph:Bphy_7230 oxidoreductase molybdopterin binding YP_003181375.1 PFAM: oxidoreductase molybdopterin binding; KEGG: cti:RALTA_B0718 sulfite:cytochrome c oxidoreductase (subunit A) oxidoreductase protein YP_003181376.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bmn:BMA10247_A0942 LuxR family transcriptional regulator YP_003181377.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dde:Dde_2852 amino acid carrier protein YP_003181378.1 PFAM: HI0933 family protein; KEGG: sun:SUN_2357 hypothetical protein YP_003181379.1 PFAM: FAD dependent oxidoreductase; KEGG: psp:PSPPH_1411 hypothetical protein YP_003181381.1 KEGG: cvi:CV_2539 hypothetical protein YP_003181382.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: dol:Dole_1228 cob(I)alamin adenosyltransferase YP_003181383.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: hypothetical protein YP_003181384.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: swi:Swit_2151 RND family efflux transporter MFP subunit YP_003181385.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_7937 ABC transporter related YP_003181386.1 PFAM: protein of unknown function DUF214; KEGG: mxa:MXAN_4201 putative macrolide efflux ABC transporter, permease protein YP_003181387.1 KEGG: bcy:Bcer98_2117 cell wall anchor domain- containing protein YP_003181388.1 KEGG: GA14075 gene product from transcript GA14075- RA YP_003181389.1 KEGG: bat:BAS3119 ABC transporter, permease protein YP_003181390.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A3317 ABC transporter, ATP- binding protein YP_003181391.1 KEGG: bcy:Bcer98_2113 hypothetical protein YP_003181392.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: sat:SYN_02443 SUA5/YciO/YrdC/YwlC family protein YP_003181393.1 PFAM: alpha/beta hydrolase fold; KEGG: bcr:BCAH187_A1976 hydrolase, alpha/beta fold family YP_003181394.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: nar:Saro_2239 ribose-5-phosphate isomerase YP_003181395.1 PFAM: glycine hydroxymethyltransferase; KEGG: bha:BH3765 serine hydroxymethyltransferase YP_003181396.1 KEGG: bcb:BCB4264_A5437 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003181397.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: glo:Glov_1747 CMP/dCMP deaminase zinc-binding YP_003181399.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: btr:Btr_0622 F0F1 ATP synthase subunit A YP_003181400.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: pzu:PHZ_c0585 AtpE, ATP synthase F0, C subunit YP_003181401.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: afw:Anae109_4485 ATP synthase F0, B subunit YP_003181402.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: ATP5; mitochondrial ATP synthase subunit 5, OSCP subunit; K02137 F-type H+-transporting ATPase oligomycin sensitivity conferral protein YP_003181403.1 KEGG: bha:BH3756 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_003181404.1 KEGG: ank:AnaeK_4485 ATP synthase F1, gamma subunit; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit YP_003181405.1 KEGG: bha:BH3754 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase YP_003181406.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: mxa:MXAN_6921 ATP synthase F1, epsilon subunit YP_003181407.1 KEGG: bph:Bphy_7110 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003181408.1 KEGG: rpe:RPE_2032 diguanylate cyclase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAS domain containing protein YP_003181410.1 KEGG: sfu:Sfum_1225 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_003181411.1 KEGG: bce:BC0163 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_003181412.1 KEGG: dsh:Dshi_2725 signal recognition particle- docking protein FtsY YP_003181413.1 KEGG: bcb:BCB4264_A2233 asparagine synthetase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003181414.1 PFAM: sodium:neurotransmitter symporter; KEGG: vfi:VF_1605 hypothetical protein YP_003181415.1 TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: tbd:Tbd_0390 translation-associated GTPase YP_003181416.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_003181417.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron- sulfur binding domain protein; KEGG: pca:Pcar_1733 aldo/keto reductase family oxidoreductase YP_003181418.1 PFAM: ExsB family protein; KEGG: pca:Pcar_2431 hypothetical protein YP_003181419.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hhe:HH1444 guanosine monophosphate synthetase GuaA YP_003181420.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aba:Acid345_1826 Pro-Hyp dipeptidase. Metallo peptidase. MEROPS family M38 YP_003181421.1 PFAM: plasmid maintenance system killer; KEGG: noc:Noc_1106 plasmid maintenance system killer YP_003181422.1 KEGG: gur:Gura_3008 XRE family plasmid maintenance system antidote protein; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003181423.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: dal:Dalk_0318 von Willebrand factor type A YP_003181424.1 KEGG: proteophosphoglycan ppg4 YP_003181425.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bat:BAS0964 RNA polymerase factor sigma C YP_003181426.1 KEGG: bcy:Bcer98_1919 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP- dependent DNA helicase, RecQ family; PFAM: HRDC domain protein; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: helicase domain protein; HRDC domain protein; DEAD-like helicase YP_003181427.1 PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: bcy:Bcer98_3623 pirin domain-containing protein YP_003181428.1 KEGG: bsu:BSU33110 hypothetical protein YP_003181429.1 KEGG: bcr:BCAH187_A3487 hypothetical protein YP_003181430.1 PFAM: transcriptional regulator PadR family protein; KEGG: bcr:BCAH187_A3488 transcriptional regulator, PadR family YP_003181431.1 PFAM: Integrase catalytic region; KEGG: hha:Hhal_1303 integrase, catalytic region YP_003181432.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: pca:Pcar_2167 glutamyl-tRNA (Gln) amidotransferase, C subunit, GatC-like YP_003181433.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; KEGG: gsu:GSU3381 glutamyl-tRNA(Gln) amidotransferase, A subunit YP_003181434.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB/Yqey domain protein; GatB central domain protein; KEGG: glutamyl-tRNA(Gln) amidotransferase, B subunit ; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B YP_003181435.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; amino acid permease- associated region; KEGG: bce:BC5051 sodium/proton-dependent alanine carrier protein YP_003181438.1 KEGG: ppd:Ppro_0519 ATP phosphoribosyltransferase regulatory subunit; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; tRNA synthetase class II (G H P and S) YP_003181439.1 KEGG: bsu:BSU34910 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase YP_003181440.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A0832 histidinol-phosphate aminotransferase YP_003181441.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: rde:RD1_3556 imidazoleglycerol-phosphate dehydratase YP_003181442.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; KEGG: afw:Anae109_0755 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_003181443.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: sme:SMc02570 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase YP_003181444.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: azo:azo3344 imidazole glycerol phosphate synthase subunit HisF YP_003181445.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: sit:TM1040_1394 phosphoribosyl-AMP cyclohydrolase YP_003181446.1 PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; KEGG: dds:Ddes_2284 diguanylate cyclase/phosphodiesterase YP_003181447.1 KEGG: dol:Dole_2486 putative transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_003181448.1 KEGG: sat:SYN_01798 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: Cold shock protein; AAA ATPase YP_003181449.1 KEGG: pca:Pcar_1881 signal peptide peptidase SppA, 67K type; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_003181450.1 PFAM: tRNA synthetase class I (M); KEGG: scl:sce8081 hypothetical protein YP_003181451.1 PFAM: oxidoreductase molybdopterin binding; KEGG: cps:CPS_4929 oxidoreductase, molybdopterin- binding YP_003181452.1 PFAM: oxidoreductase molybdopterin binding; KEGG: dsh:Dshi_3212 oxidoreductase molybdopterin binding YP_003181453.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: dvm:DvMF_1879 ATP-dependent transcriptional regulator, MalT-like, LuxR family YP_003181454.1 PFAM: ribonuclease H; KEGG: stm:STM0263 ribonuclease H YP_003181455.1 PFAM: NLP/P60 protein; KEGG: bcy:Bcer98_3731 NLP/P60 protein YP_003181456.1 PFAM: GTP-binding protein HSR1-related; KEGG: bcb:BCB4264_A4587 GTP-binding protein YP_003181458.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dvm:DvMF_1417 heavy metal translocating P- type ATPase YP_003181459.1 PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sus:Acid_3680 serine/threonine protein kinase YP_003181460.1 KEGG: gsu:GSU1083 hypothetical protein YP_003181461.1 PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BSU02670 drug-export protein YP_003181462.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcz:pE33L466_0162 transcriptional regulator YP_003181463.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: bha:BH2427 30S ribosomal protein S2 YP_003181464.1 TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: glo:Glov_2709 translation elongation factor Ts YP_003181465.1 TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: prw:PsycPRwf_0501 UDP-N-acetylglucosamine 1- carboxyvinyltransferase YP_003181466.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bca:BCE_5306 LytR family transcription antiterminator YP_003181467.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: pca:Pcar_2331 NifU-like protein YP_003181469.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_003181470.1 PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: bha:BH0023 glutamine amidotransferase subunit PdxT YP_003181472.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: gur:Gura_2042 prolipoprotein diacylglyceryl transferase YP_003181473.1 PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: dps:DP1668 desulfoferrodoxin YP_003181474.1 KEGG: bha:BH3163 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_003181475.1 PFAM: class II aldolase/adducin family protein; KEGG: msu:MS2327 rhamnulose-1-phosphate aldolase YP_003181476.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: ank:AnaeK_0724 ribosomal protein L31 YP_003181477.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; KEGG: ppd:Ppro_1453 molybdenum cofactor synthesis domain-containing protein YP_003181478.1 PFAM: periplasmic binding protein; KEGG: mno:Mnod_2734 periplasmic binding protein YP_003181479.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_01054 iron(III) dicitrate transport ATP-binding protein YP_003181480.1 PFAM: transport system permease protein; KEGG: mpo:Mpop_4300 transport system permease protein YP_003181481.1 PFAM: protein of unknown function DUF364; KEGG: dds:Ddes_1509 protein of unknown function DUF364 YP_003181482.1 KEGG: bcj:BCAL0142 putative flagellar biosynthesis protein YP_003181483.1 PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin YP_003181484.1 PFAM: Integrase catalytic region; KEGG: apj:APJL_1896 transposase YP_003181485.1 KEGG: apj:APJL_1950 transposase and inactivated derivative YP_003181486.1 KEGG: ppd:Ppro_1473 methyltransferase type 12 YP_003181487.1 KEGG: gsu:GSU3106 FAD-dependent thymidylate synthase; TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX YP_003181488.1 PFAM: protein of unknown function DUF1385; KEGG: glo:Glov_1028 protein of unknown function DUF1385 YP_003181489.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccs:CCNA_00881 ABC transporter ATP-binding protein YP_003181490.1 PFAM: ABC-2 type transporter; KEGG: smt:Smal_3872 ABC transporter sodium permease YP_003181491.1 PFAM: Abortive infection protein; KEGG: bce:BC2359 CAAX amino protease YP_003181492.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2308 ATPase YP_003181493.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: cff:CFF8240_1164 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein YP_003181494.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hhe:HH1482 putative ABC-type amino-acid transporter permease protein YP_003181495.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cjd:JJD26997_0895 amino acid ABC transporter, permease protein PEB1 YP_003181496.1 KEGG: bpd:BURPS668_A1168 surface-exposed protein YP_003181497.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A3411 XRE family transcriptional regulator YP_003181498.1 PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; KEGG: DNA topoisomerase III; K03165 DNA topoisomerase III YP_003181499.1 TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: aba:Acid345_1951 malate dehydrogenase (NAD) YP_003181500.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gme:Gmet_2995 nitroreductase YP_003181501.1 KEGG: rce:RC1_3059 hypothetical protein YP_003181502.1 KEGG: dde:Dde_3639 fumarate hydratase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region YP_003181503.1 PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: dvm:DvMF_2462 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit YP_003181504.1 KEGG: psa:PST_2617 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase YP_003181505.1 KEGG: gbm:Gbem_3205 DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta prime subunit; PFAM: ubiquitin-associated- domain-containing protein YP_003181506.1 PFAM: PSP1 domain protein; KEGG: bha:BH0045 signal peptidase-like protein YP_003181507.1 TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: acp:A2cp1_3805 nicotinate phosphoribosyltransferase YP_003181508.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bsu:BSU11110 hypothetical protein YP_003181509.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bsu:BSU11110 hypothetical protein YP_003181510.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bra:BRADO6761 tartronate semialdehyde reductase (TSAR) (2-hydroxy-3-oxopropionate reductase) YP_003181511.1 PFAM: Radical SAM domain protein; KEGG: ppd:Ppro_2526 radical SAM domain-containing protein YP_003181512.1 KEGG: gme:Gmet_0125 hypothetical protein YP_003181513.1 KEGG: gme:Gmet_0124 radical SAM family protein YP_003181514.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: ade:Adeh_3483 camphor resistance protein CrcB YP_003181515.1 PFAM: protein of unknown function DUF1113; KEGG: dde:Dde_0966 metal dependent phosphohydrolase YP_003181517.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pde:Pden_1693 major facilitator superfamily MFS_1 YP_003181518.1 PFAM: BCCT transporter; KEGG: dsh:Dshi_2119 choline/carnitine/betaine transporter YP_003181519.1 PFAM: Creatininase; KEGG: ppw:PputW619_3275 creatininase YP_003181521.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppr:PBPRA0990 putative transporter YP_003181522.1 PFAM: amidinotransferase; KEGG: rde:RD1_1472 glycine amidinotransferase YP_003181523.1 KEGG: scl:sce8104 TetR family transcriptional regulator YP_003181524.1 KEGG: dds:Ddes_0510 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: GGDEF domain containing protein; PAC repeat- containing protein YP_003181525.1 KEGG: sus:Acid_0589 hypothetical protein YP_003181526.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcr:BCAH187_A3812 putative bacteriocin ABC transporter, ATP-binding protein YP_003181527.1 KEGG: bat:BAS3615 bacteriocin ABC transporter, permease protein subunit, putative YP_003181528.1 KEGG: bcr:BCAH187_A3810 putative bacteriocin ABC transporter, permease protein subunit YP_003181529.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcr:BCAH187_A3809 putative lantibiotic biosynthesis DNA-binding response regulator YP_003181530.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: bcr:BCAH187_A3808 putative lantibiotic biosynthesis sensor histidine kinase YP_003181531.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcz:BCZK3019 DNA-binding protein; transcriptional regulator YP_003181532.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_4750 ABC transporter, ATP-binding protein YP_003181533.1 KEGG: msl:Msil_3667 major facilitator transporter YP_003181534.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcb:BCB4264_A3769 transporter, drug/metabolite exporter family YP_003181535.1 PFAM: B3/4 domain protein; KEGG: hypothetical protein YP_003181536.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: DNA-directed DNA polymerase; K02346 DNA polymerase IV YP_003181538.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_2949 GCN5-related N- acetyltransferase YP_003181539.1 KEGG: ank:AnaeK_4214 polysaccharide biosynthesis protein YP_003181540.1 PFAM: pentapeptide repeat protein; KEGG: bcz:BCZK0979 hypothetical protein YP_003181541.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: mca:MCA0095 cation transporter E1-E2 family ATPase YP_003181542.1 PFAM: RelB antitoxin; KEGG: reh:PHG184 DNA-damage-inducible protein YP_003181543.1 KEGG: vei:Veis_0177 PIN domain protein, putative YP_003181544.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: vvy:VVA0731 DNA and RNA helicase YP_003181545.1 PFAM: major facilitator superfamily MFS_1; KEGG: aha:AHA_1643 major facilitator transporter YP_003181546.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bsu:BSU27000 hypothetical protein YP_003181547.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: gbm:Gbem_0784 NADPH-dependent FMN reductase YP_003181548.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: bur:Bcep18194_C7296 LysR family transcriptional regulator YP_003181549.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ccv:CCV52592_2107 anaerobic dimethyl sulfoxide reductase subunit A YP_003181550.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: stm:STM4306 putative anaerobic dimethylsulfoxide reductase subunit B YP_003181551.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: ccv:CCV52592_2104 cytoplasmic chaperone YP_003181552.1 KEGG: ses:SARI_03339 hypothetical protein YP_003181553.1 KEGG: Hypothetical protein CBG02561 YP_003181554.1 KEGG: surface antigen BspA-like YP_003181555.1 SMART: helix-turn-helix domain protein; KEGG: transcriptional regulator, XRE family YP_003181556.1 PFAM: peptidase S51 dipeptidase E; KEGG: abu:Abu_0883 S51 family peptidase YP_003181557.1 KEGG: gbm:Gbem_1785 hypothetical protein YP_003181558.1 KEGG: mes:Meso_3899 twin-arginine translocation pathway signal YP_003181559.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_003181560.1 PFAM: GHMP kinase; KEGG: dde:Dde_3653 galactokinase YP_003181561.1 PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: glycosyl hydrolase, family 2 YP_003181562.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppg:PputGB1_1865 major facilitator transporter YP_003181564.1 PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: mxa:MXAN_0923 oxidoreductase, short chain dehydrogenase/reductase family YP_003181566.1 PFAM: GTPase EngC; KEGG: bcz:BCZK1820 ribosome-associated GTPase YP_003181567.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr6366 short-chain type dehydrogenase/reductase YP_003181568.1 KEGG: sfu:Sfum_0366 adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; S-adenosyl-L-homocysteine hydrolase YP_003181569.1 PFAM: glycosyl transferase family 2; KEGG: bcy:Bcer98_1099 glycosyl transferase family protein YP_003181570.1 KEGG: csa:Csal_2296 hypothetical protein YP_003181571.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bph:Bphy_7227 extracellular solute-binding protein YP_003181572.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: pca:Pcar_2400 NCAIR mutase (PurE)-related proteins YP_003181573.1 KEGG: dvm:DvMF_0528 protein of unknown function DUF111 YP_003181574.1 PFAM: SufBD protein; KEGG: dol:Dole_1562 SufBD protein YP_003181575.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dol:Dole_1561 ABC transporter-related protein YP_003181576.1 PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: dds:Ddes_0345 peptidase M16C associated domain protein YP_003181577.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase; HI0933 family protein; KEGG: slo:Shew_2281 flavocytochrome c YP_003181578.1 KEGG: nme:NMB1759 hypothetical protein YP_003181579.1 KEGG: bha:BH3645 oligopeptide ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003181580.1 KEGG: dde:Dde_1182 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003181581.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0030 oligopeptide ABC transporter (permease) YP_003181582.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1184 dipeptide ABC transporter, permease protein YP_003181583.1 PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_1185 putative oligopeptide ABC transporter binding protein YP_003181584.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_003181585.1 KEGG: pna:Pnap_3560 zinc finger, RanBP2-type YP_003181586.1 KEGG: hypothetical protein YP_003181587.1 PFAM: Dak phosphatase; KEGG: smd:Smed_3824 dihydroxyacetone kinase, L subunit YP_003181588.1 PFAM: Dak kinase; KEGG: pmu:PM1649 hypothetical protein YP_003181589.1 KEGG: ecf:ECH74115_5597 probable fructose- bisphosphate aldolase 1; TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003181590.1 KEGG: ftn:FTN_1475 hypothetical protein YP_003181591.1 PFAM: protein of unknown function DUF454; KEGG: sdy:SDY_0451 hypothetical protein YP_003181592.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: sil:SPO2638 translation initiation factor IF- 3 YP_003181593.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pca:Pcar_1420 ribosomal protein L35 YP_003181594.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: prw:PsycPRwf_2317 50S ribosomal protein L20 YP_003181595.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dde:Dde_0204 hypothetical protein YP_003181596.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; HI0933 family protein; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: NAD(FAD)-dependent dehydrogenase YP_003181597.1 PFAM: protein of unknown function DUF1667; KEGG: sat:SYN_02448 zinc finger protein YP_003181599.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: ect:ECIAI39_0773 RNA helicase YP_003181600.1 PFAM: Glycosyltransferase 28 domain; KEGG: bsu:BSU21920 diacylglycerol glucosyltransferase YP_003181601.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcr:BCAH187_A3704 transporter, drug/metabolite exporter family YP_003181602.1 KEGG: acp:A2cp1_1438 ATP-dependent nuclease subunit B-like protein YP_003181603.1 PFAM: UvrD/REP helicase; KEGG: afw:Anae109_1357 UvrD/REP helicase YP_003181604.1 PFAM: glycosyl transferase family 2; KEGG: zmo:ZMO0947 hypothetical protein YP_003181605.1 KEGG: glo:Glov_2954 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein YP_003181606.1 PFAM: GtrA family protein; KEGG: pca:Pcar_1743 hypothetical protein YP_003181607.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: bha:BH0897 RNA methyltransferase YP_003181608.1 TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: bha:BH0368 deoxycytidine triphosphate deaminase YP_003181609.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: wsu:WS0363 peptidyl-prolyl cis-trans isomerase YP_003181610.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: bte:BTH_I1619 TPR domain-containing protein YP_003181611.1 KEGG: bcy:Bcer98_1238 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_003181612.1 KEGG: mgm:Mmc1_0881 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_003181613.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sat:SYN_02220 oxidoreductase YP_003181614.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: sat:SYN_02221 nickel-dependent hydrogenase, small chain YP_003181615.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: sat:SYN_02222 nickel-dependent hydrogenase YP_003181616.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: bba:Bd0211 rod shape-determining protein MreB YP_003181617.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: gme:Gmet_0926 rod shape-determining protein MreC YP_003181618.1 TIGRFAM: rod shape-determining protein MreD; KEGG: gdi:GDI2335 hypothetical protein YP_003181619.1 TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: gsu:GSU2079 penicillin-binding protein 2 YP_003181620.1 PFAM: cell cycle protein; KEGG: pla:Plav_2483 rod shape-determining protein RodA YP_003181621.1 KEGG: sus:Acid_2702 hypothetical protein YP_003181622.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU3240 radical SAM domain-containing protein YP_003181623.1 KEGG: ade:Adeh_0695 radical SAM family protein YP_003181624.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dac:Daci_0098 MarR family transcriptional regulator YP_003181625.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter YP_003181626.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5645 carbohydrate ABC transporter YP_003181627.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); KEGG: mxa:MXAN_2679 HAD-superfamily subfamily IB hydrolase, TIGR01490 YP_003181628.1 KEGG: btr:Btr_2267 hypothetical protein YP_003181629.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: glo:Glov_1241 transcriptional regulator, BadM/Rrf2 family YP_003181630.1 PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; KEGG: gme:Gmet_1654 HhH-GPD YP_003181631.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_003181632.1 PFAM: protein of unknown function DUF204; KEGG: msu:MS0192 hypothetical protein YP_003181633.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: pca:Pcar_1887 chorismate mutase-P and prephenate dehydratase YP_003181634.1 KEGG: dps:DP0574 Ni/Fe-hydrogenase, small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003181635.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: dal:Dalk_2276 nickel-dependent hydrogenase large subunit YP_003181636.1 PFAM: cytochrome B561; KEGG: spl:Spea_2031 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_003181637.1 PFAM: NADPH-dependent FMN reductase; KEGG: bph:Bphy_4146 NADPH-dependent FMN reductase YP_003181638.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: sfu:Sfum_2951 hydrogenase expression/formation protein YP_003181639.1 KEGG: pau:PA14_71850 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003181640.1 KEGG: aba:Acid345_0955 hypothetical protein YP_003181641.1 PFAM: regulatory protein TetR; KEGG: rce:RC1_2055 transcriptional regulator, TetR family protein YP_003181642.1 KEGG: ccv:CCV52592_0646 flavodoxin family protein YP_003181643.1 KEGG: cti:RALTA_B1855 conserved hypothetical protein; putative membrane protein; DUF6 YP_003181644.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcz:BCZK1621 transcriptional regulator YP_003181646.1 PFAM: aldo/keto reductase; KEGG: dal:Dalk_0886 aldo/keto reductase YP_003181647.1 KEGG: nis:NIS_0559 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein YP_003181648.1 PFAM: Amidohydrolase 3; amidohydrolase; KEGG: mrd:Mrad2831_4051 amidohydrolase 3 YP_003181649.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ses:SARI_04030 hypothetical protein YP_003181650.1 KEGG: bcy:Bcer98_0048 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; TRCF domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein YP_003181651.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cha:CHAB381_1617 transporter YP_003181652.1 PFAM: protein of unknown function DUF1648; KEGG: bcb:BCB4264_A4959 conserved membrane protein YvaZ YP_003181653.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: bsu:BSU33790 hypothetical protein YP_003181654.1 PFAM: peptidase M19 renal dipeptidase; KEGG: mlo:mll3679 membrane dipeptidase YP_003181655.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: asu:Asuc_1626 MarR family transcriptional regulator YP_003181656.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bha:BH4045 hypothetical protein YP_003181657.1 PFAM: thioesterase superfamily protein; KEGG: abn:AB57_1531 thioesterase domain protein YP_003181658.1 KEGG: GE24601 gene product from transcript GE24601- RA YP_003181659.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA6418 hypothetical protein YP_003181660.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: aba:Acid345_0051 glutamyl-tRNA synthetase / glutamate--tRNA(Gln) ligase YP_003181662.1 KEGG: bcy:Bcer98_1250 hypothetical protein YP_003181663.1 KEGG: sus:Acid_1308 hypothetical protein YP_003181664.1 KEGG: bcr:BCAH187_A4904 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_003181666.1 KEGG: glo:Glov_2810 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003181667.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: hypothetical protein YP_003181668.1 KEGG: lch:Lcho_1464 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; extracellular solute-binding protein family 3; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; extracellular solute-binding protein family 3 YP_003181669.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: bha:BH1376 RNA polymerase sigma factor RpoD YP_003181670.1 PFAM: THUMP domain protein; putative RNA methylase; KEGG: aeh:Mlg_1952 23S rRNA m(2)G2445 methyltransferase YP_003181671.1 PFAM: transcriptional regulator PadR family protein; KEGG: aba:Acid345_3563 transcriptional regulator, PadR family YP_003181673.1 PFAM: protein of unknown function DUF1200; KEGG: bat:BAS1151 putative lipoprotein YP_003181674.1 KEGG: gbm:Gbem_2839 hypothetical protein YP_003181675.1 KEGG: ppd:Ppro_0579 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003181676.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bsu:BSU05120 cold-shock protein YP_003181677.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: bsu:BSU27000 hypothetical protein YP_003181678.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: gbm:Gbem_0784 NADPH-dependent FMN reductase YP_003181679.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_3139 hypothetical protein YP_003181680.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU0922 ABC transporter, ATP-binding protein YP_003181681.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: wsu:WS1472 putative RNA methylase YP_003181682.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_003181683.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: oxidoreductase protein YP_003181684.1 PFAM: peptidase M50; KEGG: dvm:DvMF_2335 peptidase M50 YP_003181685.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: gme:Gmet_1959 condensin subunit ScpA YP_003181686.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: dol:Dole_2759 segregation and condensation protein B YP_003181688.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: sfu:Sfum_0683 pseudouridine synthase YP_003181689.1 PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein; KEGG: bsu:BSU22610 prephenate dehydrogenase YP_003181690.1 KEGG: gdi:GDI3462 3-phosphoshikimate 1- carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase) YP_003181691.1 KEGG: sde:Sde_2140 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_003181692.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: bsu:BSU09540 hypothetical protein YP_003181693.1 KEGG: gur:Gura_1466 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_003181694.1 PFAM: protein of unknown function DUF512; KEGG: gbm:Gbem_0981 protein of unknown function DUF512 YP_003181695.1 KEGG: bsu:BSU22840 GTP-binding protein EngA; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; SMART: AAA ATPase YP_003181696.1 PFAM: protein of unknown function DUF205; KEGG: rpb:RPB_2422 putative glycerol-3-phosphate acyltransferase PlsY YP_003181697.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dvu:DVU3159 glycerol-3-phosphate dehydrogenase (NAD(P)+) YP_003181698.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; VanZ family protein; KEGG: bcy:Bcer98_0210 VanZ family protein YP_003181699.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: xca:xccb100_1508 6-O-methylguanine-DNA methyltransferase YP_003181700.1 PFAM: 5'-Nucleotidase domain protein; extracellular solute-binding protein family 1; KEGG: bha:BH3845 ABC transporter (substrate-binding protein) YP_003181701.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: lch:Lcho_3366 PAS/PAC sensor hybrid histidine kinase YP_003181702.1 KEGG: swd:Swoo_2978 response regulator receiver modulated metal dependent phosphohydrolase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; metal- dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: GGDEF domain containing protein; metal- dependent phosphohydrolase HD region; response regulator receiver YP_003181703.1 PFAM: Hpt domain protein; KEGG: vco:VC0395_A0965 sensory box sensor histidine kinase/response regulator YP_003181704.1 KEGG: ank:AnaeK_4082 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'- phosphate decarboxylase YP_003181705.1 PFAM: aminotransferase class V; KEGG: mgm:Mmc1_3063 aminotransferase, class V YP_003181706.1 TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; KEGG: sun:SUN_0354 PHP family histidinol phosphatase/hydrolase YP_003181707.1 PFAM: protein of unknown function DUF34; KEGG: sfu:Sfum_1210 protein of unknown function DUF34 YP_003181708.1 PFAM: protein of unknown function DUF164; KEGG: ade:Adeh_0722 hypothetical protein YP_003181709.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dal:Dalk_2403 ribosomal protein L28 YP_003181710.1 PFAM: protein of unknown function DUF322; KEGG: bcb:BCB4264_A3956 hypothetical protein YP_003181711.1 PFAM: Dak phosphatase; KEGG: bsu:BSU15840 hypothetical protein YP_003181712.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase ; helicase domain protein; KEGG: afw:Anae109_2074 ATP-dependent DNA helicase RecG YP_003181713.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: nar:Saro_1296 hypothetical protein YP_003181714.1 KEGG: maq:Maqu_3575 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003181715.1 KEGG: hypothetical protein YP_003181716.1 PFAM: protein of unknown function DUF177; KEGG: mgm:Mmc1_1576 protein of unknown function DUF177 YP_003181717.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcz:BCZK2634 GntR family transcriptional regulator YP_003181718.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK2633 ABC transporter ATP-binding protein YP_003181719.1 KEGG: bte:BTH_I2306 hypothetical protein YP_003181720.1 PFAM: Chloride channel core; KEGG: mxa:MXAN_0131 chloride transporter, chloride channel (ClC) family YP_003181721.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bha:BH3891 ABC transporter ATP-binding protein YP_003181722.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32 YP_003181723.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: ank:AnaeK_2843 fatty acid/phospholipid synthesis protein PlsX YP_003181724.1 KEGG: rnc; ribonuclease III (rnc); TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein YP_003181725.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: bha:BH2487 chromosome segregation SMC protein YP_003181727.1 PFAM: transcriptional regulator PadR family protein; KEGG: bcb:BCB4264_A3014 hypothetical protein YP_003181729.1 KEGG: tgr:Tgr7_2988 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_003181730.1 PFAM: beta-lactamase domain protein; KEGG: dol:Dole_2556 beta-lactamase domain- containing protein YP_003181731.1 KEGG: cco:CCC13826_0614 hypothetical protein YP_003181732.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcy:Bcer98_0751 helix-turn-helix domain- containing protein YP_003181733.1 KEGG: aci:ACIAD1078 putative rhs-related protein YP_003181734.1 KEGG: bha:BH2484 signal recognition particle; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_003181735.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt2386 hypothetical protein YP_003181736.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dal:Dalk_4649 ribosomal protein S16 YP_003181737.1 KEGG: mxa:MXAN_3546 KH domain protein YP_003181738.1 PFAM: PRC-barrel domain protein; KEGG: aba:Acid345_2874 16S rRNA processing protein RimM YP_003181739.1 KEGG: gur:Gura_3760 tRNA (guanine-N1)- methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_003181740.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: hypothetical protein; K03100 signal peptidase I YP_003181741.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: dvm:DvMF_2718 signal peptidase I YP_003181742.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003181743.1 KEGG: pca:Pcar_0599 glycine tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit; PFAM: glycyl-tRNA synthetase beta subunit YP_003181744.1 PFAM: protein of unknown function DUF299; KEGG: protein of unknown function DUF299 ; K09773 hypothetical protein YP_003181745.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_003181746.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal YP_003181747.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: vha:VIBHAR_03493 hypothetical protein YP_003181748.1 PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; KEGG: bba:Bd2267 putative potassium/proton antiporter YP_003181749.1 KEGG: dol:Dole_1251 membrane protein YP_003181750.1 PFAM: regulatory protein TetR; KEGG: pla:Plav_1950 TetR family transcriptional regulator YP_003181751.1 KEGG: ank:AnaeK_1781 hypothetical protein YP_003181752.1 PFAM: FMN-binding domain protein; KEGG: shl:Shal_2064 FMN-binding domain-containing protein YP_003181753.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: glo:Glov_0945 succinate dehydrogenase YP_003181754.1 KEGG: GK10816 gene product from transcript GK10816- RA YP_003181755.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: ppd:Ppro_1856 fis family transcriptional regulator YP_003181756.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bph:Bphy_1008 MarR family transcriptional regulator YP_003181757.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bcb:BCB4264_A0470 cation-transporting ATPase, E1-E2 family YP_003181758.1 KEGG: pca:Pcar_2170 aIF-2BI family translation initiation factor; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_003181759.1 KEGG: dol:Dole_0439 deoxyguanosinetriphosphate triphosphohydrolase-like protein; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003181760.1 PFAM: AzlC family protein; KEGG: gsu:GSU0768 AzlC family protein YP_003181761.1 PFAM: branched-chain amino acid transport; KEGG: bca:BCE_4093 hypothetical protein YP_003181762.1 TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: bha:BH2478 50S ribosomal protein L19 YP_003181763.1 PFAM: ribonuclease HII/HIII; KEGG: bsu:BSU16060 ribonuclease HII YP_003181764.1 PFAM: protein of unknown function UPF0102; KEGG: gsu:GSU0650 hypothetical protein YP_003181765.1 KEGG: ank:AnaeK_3688 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003181766.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gsu:GSU2550 DNA processing protein DprA YP_003181767.1 KEGG: glo:Glov_2136 hypothetical protein YP_003181769.1 TIGRFAM: gid protein; PFAM: glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: gsu:GSU2547 tRNA (uracil-5-)- methyltransferase Gid YP_003181770.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pmr:PMI2012 tyrosine recombinase YP_003181772.1 KEGG: sfu:Sfum_3405 hypothetical protein YP_003181773.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bsu:BSU30400 hypothetical protein YP_003181774.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bcr:BCAH187_A2656 sensor protein YxdK YP_003181775.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A4956 efflux ABC transporter, ATP- binding protein YP_003181776.1 PFAM: protein of unknown function DUF214; KEGG: bcb:BCB4264_A4949 ABC transporter permease protein YP_003181777.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: transcriptional regulator, XRE family YP_003181778.1 TIGRFAM: capsular exopolysaccharide family; KEGG: mxa:MXAN_1025 capsular exopolysaccharide family protein YP_003181779.1 KEGG: vsp:VS_II0696 hypothetical protein YP_003181780.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bsu:BSU35160 excinuclease ABC subunit A YP_003181781.1 PFAM: protein of unknown function DUF6 transmembrane; GCN5-related N-acetyltransferase; KEGG: ccv:CCV52592_0884 transporter YP_003181782.1 PFAM: protein of unknown function DUF6 transmembrane; GCN5-related N-acetyltransferase; KEGG: ccv:CCV52592_0884 transporter YP_003181783.1 PFAM: GCN5-related N-acetyltransferase; KEGG: acetyltransferase, GNAT family protein YP_003181784.1 KEGG: mucin-associated surface protein (MASP) YP_003181785.1 PFAM: Domain of unknown function DUF1848; KEGG: msu:MS2157 hypothetical protein YP_003181787.1 PFAM: FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sat:SYN_02917 FAD-dependent dehydrogenase YP_003181788.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: thylakoid assembly protein, putative ; K03116 sec-independent protein translocase protein TatA YP_003181789.1 PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003181790.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sme:SMa1749 putative transcriptional regulator YP_003181791.1 PFAM: cobalt transport protein; KEGG: vha:VIBHAR_05107 ABC-type cobalt transport system permease component CbiQ YP_003181792.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003181793.1 TIGRFAM: conserved hypothetical protein YP_003181794.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_5275 ABC transporter, permease/ATP- binding protein YP_003181795.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cha:CHAB381_0628 ABC transporter, ATP-binding protein YP_003181796.1 KEGG: mag:amb3850 UDP-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003181797.1 KEGG: bsu:BSU38740 ABC transporter ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003181798.1 KEGG: bsu:BSU38730 cysteine ABC transporter ATP- binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase YP_003181800.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_003181802.1 KEGG: glo:Glov_2883 metal dependent phosphohydrolase YP_003181803.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcr:BCAH187_A3663 helix-turn-helix domain protein YP_003181804.1 catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity YP_003181805.1 PFAM: regulatory protein TetR; KEGG: mxa:MXAN_6906 transcriptional regulator, TetR family YP_003181806.1 KEGG: jan:Jann_1769 mucin-associated surface protein YP_003181807.1 PFAM: Rhomboid family protein; KEGG: bsu:BSU24870 hypothetical protein YP_003181808.1 TIGRFAM: branched-chain amino acid transport system II carrier protein; PFAM: branched-chain amino acid transport system II carrier protein; KEGG: bcy:Bcer98_0582 branched-chain amino acid transport system II carrier protein YP_003181809.1 KEGG: sfu:Sfum_0048 hypothetical protein YP_003181811.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: mxa:MXAN_4573 DEAD/DEAH box helicase YP_003181812.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: rde:RD1_3999 RNA polymerase ECF-type sigma factor, putative YP_003181813.1 KEGG: GH10507 gene product from transcript GH10507- RA YP_003181814.1 KEGG: bch:Bcen2424_1415 inner-membrane translocator YP_003181815.1 KEGG: acp:A2cp1_1561 hypothetical protein YP_003181816.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rce:RC1_1686 ABC transporter, ATP-binding protein, putative YP_003181817.1 Converts isocitrate to alpha ketoglutarate YP_003181819.1 TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bcb:BCB4264_A0430 hypothetical protein YP_003181820.1 TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bcb:BCB4264_A0430 hypothetical protein YP_003181821.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mrd:Mrad2831_3418 ABC transporter related YP_003181822.1 PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: bha:BH3871 Rieske [2Fe-2S] iron-sulfur protein YP_003181823.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: UV damage repair protein, ImpB/MucB/SamB family YP_003181824.1 PFAM: YolD-like protein YP_003181825.1 PFAM: ABC transporter related; KEGG: bja:blr8051 putative excinuclease ABC subunit A YP_003181826.1 in Corynebacterium glutamicum the aminotransferase can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; this protein contains a helix-turn-helix domain at the N-terminus YP_003181827.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: bha:BH0531 hypothetical protein YP_003181828.1 PFAM: arsenate reductase and related; KEGG: scl:sce0191 arsenate reductase YP_003181829.1 PFAM: fructose-16-bisphosphatase; KEGG: bsu:BSU40190 fructose-1,6-bisphosphatase YP_003181830.1 PFAM: Aldose 1-epimerase; KEGG: bcr:BCAH187_A1765 putative LacX protein YP_003181831.1 KEGG: cff:CFF8240_0211 DNA-3-methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_003181832.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: dvm:DvMF_1575 sulfate transporter YP_003181833.1 PFAM: nitroreductase; KEGG: cak:Caul_4232 nitroreductase YP_003181835.1 PFAM: RelB antitoxin; KEGG: pol:Bpro_1922 RelB antitoxin YP_003181837.1 KEGG: mxa:MXAN_5582 hypothetical protein YP_003181839.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: swi:Swit_2225 AraC family transcriptional regulator YP_003181840.1 PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein YP_003181841.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003181842.1 TIGRFAM: conserved hypothetical protein; KEGG: slc7a2; solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 YP_003181843.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pde:Pden_1425 ABC transporter related YP_003181844.1 PFAM: iron dependent repressor; SMART: iron dependent repressor; KEGG: sml:Smlt2837 putative transcriptional regulator (iron dependant repressor family) YP_003181846.1 PFAM: regulatory protein TetR; KEGG: sdy:SDY_0455 DNA-binding transcriptional repressor YP_003181847.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rru:Rru_A2340 ABC transporter, transmembrane region YP_003181848.1 PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: rru:Rru_A2339 ABC transporter component YP_003181849.1 TIGRFAM: conserved hypothetical protein YP_003181850.1 PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein YP_003181851.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003181852.1 PFAM: iron dependent repressor; regulatory protein MarR; SMART: iron dependent repressor; regulatory protein MarR; KEGG: mpo:Mpop_4272 iron (metal) dependent repressor, DtxR family YP_003181856.1 PFAM: IstB domain protein ATP-binding protein; KEGG: bcr:BCAH187_A4023 putative prophage LambdaBa02, DNA replication protein DnaC YP_003181858.1 KEGG: hypothetical protein YP_003181859.1 PFAM: TRAG family protein; KEGG: mes:Meso_4169 TraG protein YP_003181862.1 KEGG: bca:BCE_A0025 hypothetical protein YP_003181863.1 PFAM: NLP/P60 protein; Mannosyl-glycoprotein endo- beta-N-acetylglucosamidase; KEGG: bpt:Bpet2252 hypothetical protein YP_003181867.1 PFAM: Cna B domain protein; KEGG: bce:BC3526 collagen adhesion protein YP_003181868.1 PFAM: peptidase C60 sortase A and B; KEGG: bha:BH3294 hypothetical protein YP_003181870.1 KEGG: oan:Oant_0577 hypothetical protein YP_003181871.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: kpn:KPN_pKPN4p07083 putative transposase YP_003181872.1 PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: xac:XAC2898 type I restriction-modification system endonuclease YP_003181873.1 KEGG: maq:Maqu_0414 restriction modification system DNA specificity subunit YP_003181874.1 PFAM: N-6 DNA methylase; KEGG: sbm:Shew185_4454 N-6 DNA methylase YP_003181875.1 KEGG: pcr:Pcryo_2410 hypothetical protein YP_003181876.1 PFAM: Abi family protein; KEGG: baa:BXA0052 hypothetical protein YP_003181878.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: GF21209 gene product from transcript GF21209- RA YP_003181879.1 PFAM: CopG domain protein DNA-binding domain protein YP_003181880.1 PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: plasmid stabilization protein ; K03497 chromosome partitioning protein, ParB family YP_003181881.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dar:Daro_4105 chromosome segregation ATPase YP_003181882.1 PFAM: protein of unknown function UPF0102; KEGG: ppd:Ppro_1186 hypothetical protein YP_003181883.1 KEGG: hso:HS_0425 hypothetical protein YP_003181884.1 PFAM: integrase family protein; KEGG: hso:HS_0424 phage integrase YP_003181885.1 KEGG: hso:HS_0423 phage-related protein YP_003181886.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: hso:HS_0422 transcriptional regulator YP_003181888.1 TIGRFAM: GMP synthase, large subunit; PFAM: GMP synthase domain protein; KEGG: bha:BH0607 bifunctional GMP synthase/glutamine amidotransferase protein YP_003181889.1 PFAM: protein of unknown function DUF1025; KEGG: ank:AnaeK_1469 protein of unknown function DUF1025 YP_003181890.1 PFAM: transcriptional regulator PadR family protein; KEGG: bcb:BCB4264_A2817 hypothetical protein YP_003181891.1 KEGG: bcb:BCB4264_A2816 hypothetical protein YP_003181892.1 PFAM: protein of unknown function DUF214; KEGG: gur:Gura_1658 hypothetical protein YP_003181893.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afw:Anae109_0495 ABC transporter related YP_003181894.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xau:Xaut_1532 integral membrane sensor signal transduction histidine kinase YP_003181895.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: met:M446_3564 two component transcriptional regulator YP_003181896.1 SMART: helix-turn-helix domain protein; KEGG: glo:Glov_0100 transcriptional regulator, XRE family YP_003181898.1 KEGG: pfl:PFL_4911 hypothetical protein YP_003181899.1 KEGG: AGAP011722-PA YP_003181901.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bcr:BCAH187_A0723 heavy metal-transporting ATPase YP_003181902.1 PFAM: Heavy metal transport/detoxification protein; KEGG: bcr:BCAH187_A0723 heavy metal-transporting ATPase YP_003181903.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: wsu:WS1120 putative transcriptional regulator YP_003181904.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003181906.1 PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bsu:BSU02220 hypothetical protein YP_003181907.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: dds:Ddes_0873 protein of unknown function DUF6 transmembrane YP_003181908.1 PFAM: protein of unknown function DUF159; KEGG: saz:Sama_0311 hypothetical protein YP_003181909.1 PFAM: protein of unknown function DUF156; KEGG: bha:BH0558 hypothetical protein YP_003181910.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: abu:Abu_0480 heavy-metal transporting P-type ATPase YP_003181911.1 PFAM: aminotransferase class I and II; KEGG: gbm:Gbem_3537 L-threonine-O-3-phosphate decarboxylase YP_003181912.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sus:Acid_0850 DNA-directed DNA polymerase YP_003181913.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bcy:Bcer98_1951 DegV family protein YP_003181914.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: sfu:Sfum_0122 isoleucyl-tRNA synthetase YP_003181915.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: ppw:PputW619_4558 lipoprotein signal peptidase YP_003181916.1 KEGG: bcy:Bcer98_2541 RluA family pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003181917.1 PFAM: protein of unknown function DUF1113; KEGG: glo:Glov_2883 metal dependent phosphohydrolase YP_003181918.1 KEGG: tmz:Tmz1t_1723 ferrochelatase; TIGRFAM: ferrochelatase; PFAM: ferrochelatase YP_003181919.1 KEGG: gur:Gura_2927 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein YP_003181920.1 PFAM: Endoribonuclease L-PSP; KEGG: cvi:CV_1182 hypothetical protein YP_003181921.1 PFAM: Transglycosylase-associated protein; KEGG: rce:RC1_1176 transglycosylase associated protein, putative YP_003181923.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bha:BH3362 RNA polymerase factor sigma C YP_003181924.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: aha:AHA_0580 LuxR family transcriptional regulator YP_003181925.1 PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: aha:AHA_2183 putative transporter YP_003181926.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bha:BH2163 hypothetical protein YP_003181927.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: gur:Gura_2653 NADH dehydrogenase (quinone) YP_003181928.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: gur:Gura_2652 respiratory-chain NADH dehydrogenase, subunit 1 YP_003181929.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: gur:Gura_2651 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_003181930.1 KEGG: gur:Gura_0804 hypothetical protein YP_003181931.1 KEGG: gur:Gura_0803 NADH dehydrogenase (quinone) YP_003181932.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dds:Ddes_1668 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003181933.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyltransferase YP_003181934.1 PFAM: VanW family protein; KEGG: bsu:BSU18720 hypothetical protein YP_003181935.1 KEGG: dps:DP1266 coenzyme F390 synthetase II YP_003181936.1 PFAM: amino acid-binding ACT domain protein; KEGG: dal:Dalk_1710 amino acid-binding ACT domain protein YP_003181937.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; beta-lactamase; KEGG: bha:BH1573 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) YP_003181938.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: afw:Anae109_0136 diguanylate cyclase YP_003181939.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: indolepyruvate ferredoxin oxidoreductase, alpha subunit ; K00179 indolepyruvate ferredoxin oxidoreductase, alpha subunit YP_003181940.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dps:DP1265 indolepyruvate oxidoreductase subunit B YP_003181941.1 PFAM: amino acid-binding ACT domain protein; KEGG: dol:Dole_2322 amino acid-binding ACT domain- containing protein YP_003181942.1 KEGG: dps:DP1266 coenzyme F390 synthetase II YP_003181943.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: mxa:MXAN_1271 tRNA synthetase class I domain protein YP_003181945.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: plu:plu2262 hypothetical protein YP_003181946.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vha:VIBHAR_02586 hypothetical protein YP_003181947.1 KEGG: vvy:VV2304 chaperone protein TorD YP_003181948.1 KEGG: mxa:MXAN_6047 putative sulfite oxidase subunit YedZ YP_003181949.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pol:Bpro_2543 two component transcriptional regulator, LuxR family YP_003181951.1 PFAM: UbiA prenyltransferase; KEGG: bcr:BCAH187_A4999 putative 1,4-dihydroxy-2- naphthoate octaprenyltransferase YP_003181953.1 PFAM: thioesterase superfamily protein; KEGG: bcy:Bcer98_2255 thioesterase superfamily protein YP_003181954.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: bca:BCE_0521 low molecular weight phosphotyrosine protein phosphatase family protein YP_003181955.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: psb:Psyr_4371 DedA:phosphoesterase, PA- phosphatase related YP_003181956.1 KEGG: bha:BH2208 hypothetical protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein YP_003181957.1 PFAM: General secretory system II protein E domain protein; KEGG: efe:EFER_2780 bacteriophage N4 receptor, inner membrane subunit YP_003181958.1 KEGG: rso:RSp0510 UDP-N-acetylglucosamine 2- epimerase protein; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003181960.1 KEGG: afw:Anae109_0547 hypothetical protein YP_003181961.1 KEGG: bcb:BCB4264_A3650 hypothetical protein YP_003181963.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bsu:BSU27000 hypothetical protein YP_003181964.1 KEGG: ccs:CCNA_03828 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_003181965.1 PFAM: ATP-cone domain protein; KEGG: bha:BH3146 transcriptional regulator NrdR YP_003181966.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_0246 ABC transporter related YP_003181968.1 KEGG: bha:BH2356 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein YP_003181969.1 TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ras family protein; KEGG: GTP-binding family protein ; K03665 GTP- binding protein HflX YP_003181970.1 KEGG: bsu:BSU17330 tRNA delta(2)- isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_003181971.1 KEGG: bcb:BCB4264_A3871 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA- i(6)A37 thiotransferase enzyme MiaB; PFAM: Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_003181972.1 PFAM: Stage V sporulation protein S; KEGG: bsu:BSU16980 required for dehydratation of the spore core and assembly of the coat (stage V sporulation) YP_003181973.1 KEGG: pfo:Pfl01_3390 periplasmic sensor signal transduction histidine kinase YP_003181974.1 KEGG: bcr:BCAH187_A3825 HDIG/HD/KH domain protein; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KH type 1 domain protein; SMART: metal-dependent phosphohydrolase HD region; KH domain protein YP_003181975.1 PFAM: regulatory protein RecX; KEGG: hch:HCH_02189 hypothetical protein YP_003181976.1 KEGG: rlt:Rleg2_1958 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_003181977.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CinA domain protein; CDP-alcohol phosphatidyltransferase; KEGG: bha:BH2386 phosphatidylglycerophosphate synthase YP_003181978.1 KEGG: glo:Glov_3199 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_003181979.1 PFAM: protein of unknown function DUF520; KEGG: protein of unknown function DUF520 ; K09767 hypothetical protein YP_003181980.1 KEGG: gsu:GSU1115 transcriptional regulator, putative YP_003181981.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cti:RALTA_A1509 DNA translocase YP_003181982.1 PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: glo:Glov_3415 beta-lactamase domain protein YP_003181983.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bha:BH1742 dihydrodipicolinate synthase YP_003181984.1 KEGG: bha:BH1680 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; homoserine dehydrogenase NAD-binding YP_003181985.1 KEGG: bcy:Bcer98_2459 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA- binding, bacterial/organelle-type; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_003181986.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: rru:Rru_A3784 SSU ribosomal protein S15P YP_003181987.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bcz:BCZK1690 sensor histidine kinase YP_003181988.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bat:BAS1739 DNA-binding response regulator YP_003181989.1 KEGG: hypothetical protein YP_003181990.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: mex:Mext_0325 exonuclease RNase T and DNA polymerase III YP_003181992.1 KEGG: xfn:XfasM23_1261 addiction module antitoxin YP_003181994.1 KEGG: dde:Dde_1149 hypothetical protein YP_003181995.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: dal:Dalk_0046 DNA repair protein RecO YP_003181996.1 PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; KEGG: bsu:BSU15770 protein kinase YP_003181997.1 TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: dal:Dalk_3409 GTP-binding protein Era YP_003181998.1 PFAM: diacylglycerol kinase; KEGG: afw:Anae109_0809 diacylglycerol kinase YP_003181999.1 PFAM: protein of unknown function UPF0054; KEGG: bha:BH1363 hypothetical protein YP_003182000.1 PFAM: PhoH family protein; KEGG: mxa:MXAN_4738 PhoH family protein YP_003182001.1 KEGG: hypothetical protein YP_003182002.1 KEGG: sus:Acid_3170 MiaB-like tRNA modifying enzyme; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_003182003.1 PFAM: protein of unknown function DUF558; KEGG: mxa:MXAN_1133 conserved hypothetical protein TIGR00046 YP_003182004.1 KEGG: bcy:Bcer98_3039 chaperone protein DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_003182005.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: ppd:Ppro_1406 heat-inducible transcription repressor HrcA YP_003182006.1 KEGG: sal:Sala_0258 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003182007.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: gbm:Gbem_2807 TIM-barrel protein, nifR3 family YP_003182009.1 TIGRFAM: GTP-binding protein LepA; small GTP- binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; KEGG: bcb:BCB4264_A4438 GTP-binding protein LepA YP_003182010.1 KEGG: MBCDH8; hypothetical protein YP_003182011.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: msu:MS1756 30S ribosomal protein S20 YP_003182012.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: sfu:Sfum_2086 DNA polymerase III, delta subunit YP_003182013.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: ank:AnaeK_2593 DNA internalization-related competence protein ComEC/Rec2 YP_003182014.1 KEGG: bsu:BSU25590 unspecific high-affinity DNA- binding protein; TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1 YP_003182015.1 TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; THUMP domain protein; KEGG: bha:BH3203 thiamin biosynthesis YP_003182016.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit YP_003182017.1 KEGG: ilo:IL2382 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_003182019.1 KEGG: noc:Noc_2353 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003182020.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: ppd:Ppro_2629 dihydroorotate dehydrogenase family protein YP_003182021.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dal:Dalk_1941 oxidoreductase FAD/NAD(P)- binding domain protein YP_003182022.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcr:BCAH187_A3663 helix-turn-helix domain protein YP_003182024.1 PFAM: small multidrug resistance protein; KEGG: yen:YE0359 quaternary ammonium compound- resistance protein SugE YP_003182025.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: ank:AnaeK_2118 carbamoyl-phosphate synthase, large subunit YP_003182026.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: pca:Pcar_1613 carbamoyl phosphate synthase small subunit YP_003182028.1 KEGG: gsu:GSU1272 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase YP_003182029.1 TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: pca:Pcar_1615 aspartate carbamoyltransferase YP_003182030.1 PFAM: phosphoribosyltransferase; KEGG: bcy:Bcer98_2540 pyrimidine regulatory protein PyrR YP_003182032.1 PFAM: peptidase C60 sortase A and B; KEGG: bce:BC4543 hypothetical protein YP_003182033.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: cco:CCC13826_0211 formate dehydrogenase accessory protein YP_003182034.1 PFAM: formate dehydrogenase accessory protein; KEGG: sat:SYN_00288 uncharacterized protein involved in formate dehydrogenase formation YP_003182035.1 KEGG: son:SO_3922 formate dehydrogenase, putative YP_003182036.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_00633 formate dehydrogenase iron- sulfur subunit YP_003182037.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; KEGG: sfu:Sfum_1274 formate dehydrogenase, alpha subunit YP_003182038.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: gur:Gura_3374 formate dehydrogenase, alpha subunit YP_003182039.1 Contains selenocysteine; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: ppd:Ppro_1707 selenide, water dikinase YP_003182040.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: ccv:CCV52592_0874 (R)-2-hydroxyglutaryl-CoA dehydratase activator (2-hydroxyglutaryl-CoA dehydratase component A) YP_003182041.1 KEGG: pca:Pcar_0233 hypothetical protein YP_003182042.1 KEGG: gsu:GSU1868 aminotransferase, class V; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; aminotransferase class-III; Cys/Met metabolism pyridoxal-phosphate- dependent protein YP_003182043.1 PFAM: SirA family protein; KEGG: sat:SYN_01072 putative cytoplasmic protein YP_003182045.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: dal:Dalk_3066 2-hydroxyglutaryl-CoA dehydratase D-component YP_003182046.1 PFAM: formate/nitrite transporter; KEGG: rpc:RPC_4565 formate/nitrite transporter YP_003182047.1 KEGG: dvm:DvMF_1311 L-seryl-tRNA(sec) selenium transferase; TIGRFAM: L-seryl-tRNA selenium transferase; PFAM: L-seryl-tRNA selenium transferase; Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003182048.1 KEGG: gbm:Gbem_0035 selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein YP_003182049.1 PFAM: Radical SAM domain protein; KEGG: slo:Shew_0932 radical SAM domain-containing protein YP_003182050.1 PFAM: AMMECR1 domain protein; Extradiol ring- cleavage dioxygenase class III protein subunit B; KEGG: ank:AnaeK_1182 AMMECR1 domain protein YP_003182051.1 PFAM: protein of unknown function DUF1113; KEGG: dde:Dde_0966 metal dependent phosphohydrolase YP_003182052.1 PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: xop:PXO_04138 two-component system regulatory protein YP_003182053.1 PFAM: amino acid permease-associated region; KEGG: pap:PSPA7_6311 putative transporter YP_003182054.1 PFAM: aldo/keto reductase; KEGG: prostaglandin f2-alpha synthase YP_003182055.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pca:Pcar_1242 acetyl-CoA synthetase YP_003182056.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pca:Pcar_1243 transcriptional regulator YP_003182057.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: aba:Acid345_0953 thiamine pyrophosphate enzyme-like TPP-binding YP_003182058.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: pca:Pcar_1546 pyruvate:ferredoxin oxidoreductase/2-oxoacid:ferredoxin oxidoreductase, beta subunit YP_003182059.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: sfu:Sfum_0301 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_003182060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_2230 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003182061.1 KEGG: dal:Dalk_2229 putative ATP/GTP-binding protein YP_003182062.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pca:Pcar_1242 acetyl-CoA synthetase YP_003182063.1 PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dvm:DvMF_0002 transcriptional regulator, XRE family YP_003182064.1 KEGG: saz:Sama_3604 coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003182065.1 PFAM: NusB/RsmB/TIM44; Fmu (Sun) domain protein; KEGG: ppd:Ppro_3242 sun protein YP_003182066.1 KEGG: rpc:RPC_0806 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein YP_003182067.1 KEGG: smd:Smed_0054 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003182068.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: bcb:BCB4264_A2064 SPFH domain/band 7 family protein YP_003182069.1 PFAM: protein of unknown function DUF107; KEGG: sfu:Sfum_2309 protein of unknown function DUF107 YP_003182070.1 KEGG: hha:Hhal_1100 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein YP_003182072.1 KEGG: noc:Noc_1786 hypothetical protein YP_003182073.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dol:Dole_1124 metal-dependent phosphohydrolase YP_003182074.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: dvm:DvMF_2650 phosphodiesterase, MJ0936 family YP_003182075.1 KEGG: bpt:Bpet3362 HlyB/MsbA family ABC transporter; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase YP_003182076.1 KEGG: hin:HI0663m ABC transporter ATP-binding protein YP_003182077.1 KEGG: apj:APJL_1842 hypothetical protein YP_003182078.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: ade:Adeh_2387 pantothenate kinase YP_003182079.1 TIGRFAM: oligopeptide transporters, OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: aba:Acid345_4203 oligopeptide transporter OPT YP_003182080.1 PFAM: glycosyl transferase family 2; KEGG: dps:DP0013 glycosyltransferase involved capsular polysaccharide biosynthesis YP_003182081.1 KEGG: pat:Patl_3069 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like YP_003182082.1 KEGG: hhe:HH1309 phosphotransacetylase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_003182083.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: hhe:HH1308 acetate kinase YP_003182084.1 PFAM: histidine triad (HIT) protein; KEGG: scl:sce9030 putative protein kinase C inhibitor YP_003182085.1 PFAM: Exonuclease VII small subunit; KEGG: dsh:Dshi_3296 exodeoxyribonuclease VII, small subunit YP_003182086.1 KEGG: tgr:Tgr7_1034 exodeoxyribonuclease VII; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_003182087.1 PFAM: peptidase membrane zinc metallopeptidase putative; KEGG: bca:BCE_1656 neutral zinc metallopeptidase, putative YP_003182088.1 KEGG: mca:MCA2378 ribonuclease D; TIGRFAM: ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein YP_003182089.1 PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: gdi:GDI1165 putative diacylglycerol kinase family protein YP_003182090.1 PFAM: Integral membrane protein TerC; KEGG: mes:Meso_3194 integral membrane protein TerC YP_003182092.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: Fe-S ferredoxin-type protein YP_003182093.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dar:Daro_3515 nitrate reductase YP_003182094.1 KEGG: spl:Spea_3263 hypothetical protein YP_003182095.1 PFAM: NapD family protein; KEGG: rlt:Rleg2_2939 NapD family protein YP_003182096.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1058 ferredoxin-type protein, NapH/MauN family YP_003182097.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: hch:HCH_00419 response regulator YP_003182098.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: oan:Oant_0442 integral membrane sensor signal transduction histidine kinase YP_003182099.1 PFAM: thiamine monophosphate synthase; KEGG: mpo:Mpop_0577 thiamine-phosphate diphosphorylase YP_003182100.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center YP_003182101.1 PFAM: thiazole biosynthesis family protein; KEGG: cff:CFF8240_0075 thiazole synthase YP_003182102.1 TIGRFAM: thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pca:Pcar_0611 thiamine biosynthesis protein ThiF YP_003182103.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: dde:Dde_1554 thiamine biosynthesis protein ThiS YP_003182105.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hypothetical protein YP_003182106.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mxa:MXAN_3043 cation efflux family protein YP_003182107.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: aeh:Mlg_1971 preprotein translocase subunit SecG YP_003182108.1 PFAM: type II secretion system protein; KEGG: ppd:Ppro_2698 type II secretion system protein YP_003182109.1 PFAM: type II secretion system protein; KEGG: bpy:Bphyt_4618 type II secretion system protein YP_003182110.1 PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein YP_003182111.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: pca:Pcar_1746 Flp pilus assembly protein CpaB YP_003182113.1 PFAM: TadE family protein YP_003182116.1 PFAM: peptidase A24A prepilin type IV; KEGG: gur:Gura_1800 peptidase A24A domain- containing protein YP_003182118.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bmj:BMULJ_04424 subtilisin-like serine protease YP_003182119.1 KEGG: similar to hyphally regulated cell wall protein HYR1p YP_003182128.1 KEGG: hypothetical protein YP_003182129.1 PFAM: protein of unknown function DUF192; KEGG: ppd:Ppro_2697 hypothetical protein YP_003182130.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_003182131.1 KEGG: mxa:MXAN_2817 triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase YP_003182132.1 PFAM: phosphoglycerate kinase; KEGG: bsu:BSU33930 phosphoglycerate kinase YP_003182133.1 KEGG: bha:BH3560 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003182134.1 PFAM: thioesterase superfamily protein; KEGG: scl:sce5737 hypothetical protein YP_003182135.1 PFAM: protein of unknown function DUF199; KEGG: bcy:Bcer98_3696 hypothetical protein YP_003182136.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: mxa:MXAN_3230 hypothetical protein YP_003182137.1 PFAM: conserved hypothetical protein; KEGG: bsu:BSU34770 hypothetical protein YP_003182138.1 KEGG: mxa:MXAN_2633 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein YP_003182140.1 PFAM: UvrD/REP helicase; KEGG: glo:Glov_0481 UvrD/REP helicase YP_003182141.1 PFAM: protein of unknown function DUF340 membrane; KEGG: mmw:Mmwyl1_0847 protein of unknown function DUF340 membrane YP_003182142.1 PFAM: beta-lactamase; KEGG: bha:BH0715 hypothetical protein YP_003182144.1 PFAM: DltD domain protein; KEGG: bcb:BCB4264_A2859 DltD protein YP_003182145.1 TIGRFAM: D-alanyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: bsu:BSU38520 D-alanine--poly(phosphoribitol) ligase subunit 2 YP_003182146.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: bsu:BSU38510 D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanyl transfer from DCP to undecaprenol-phosphate) (lipoteichoic acid biosynthesis) YP_003182147.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: bsu:BSU38500 D-alanine--D-alanyl carrier protein ligase YP_003182148.1 PFAM: protein of unknown function DUF188; KEGG: bsu:BSU25230 hypothetical protein YP_003182149.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: mch:Mchl_5579 filamentation induced by cAMP protein Fic YP_003182151.1 KEGG: ses:SARI_03203 hypothetical protein YP_003182153.1 KEGG: bbt:BBta_p0034 hypothetical protein YP_003182154.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_003182155.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_003182156.1 KEGG: mms:mma_0653 signal transduction protein YP_003182157.1 KEGG: cff:CFF8240_0368 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003182158.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_003182159.1 PFAM: sulfatase; KEGG: mlo:mll7848 putative cyclic beta-1,2-glucan modification protein YP_003182160.1 TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain protein; PFAM: Riboflavin kinase; FAD synthetase; KEGG: xau:Xaut_1843 riboflavin biosynthesis protein RibF YP_003182161.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: gme:Gmet_1589 tRNA pseudouridine synthase B YP_003182162.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein YP_003182163.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: cps:CPS_2204 ribosome-binding factor A YP_003182164.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; GTP-binding protein HSR1-related; KEGG: gme:Gmet_1586 translation initiation factor IF-2 YP_003182165.1 PFAM: protein of unknown function DUF448; KEGG: mxa:MXAN_2067 hypothetical protein YP_003182166.1 TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; KEGG: bha:BH2416 transcription elongation factor NusA YP_003182167.1 PFAM: protein of unknown function DUF150; KEGG: tgr:Tgr7_1001 protein of unknown function DUF150 YP_003182168.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: histidine kinase YP_003182169.1 KEGG: stm:PSLT104 conjugal transfer protein TraD YP_003182170.1 KEGG: hypothetical protein YP_003182171.1 PFAM: coagulation factor 5/8 type domain protein; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: glo:Glov_0642 fibronectin type III domain protein YP_003182172.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ppd:Ppro_0473 acyl-CoA synthetase YP_003182173.1 PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ppd:Ppro_0474 XRE family transcriptional regulator YP_003182174.1 PFAM: membrane protein of uknown function UCP014873; KEGG: dds:Ddes_1648 membrane protein of unknown function UCP014873 YP_003182175.1 KEGG: sse:Ssed_3233 putative ferredoxin YP_003182176.1 PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; HI0933 family protein; KEGG: shl:Shal_0217 FAD dependent oxidoreductase YP_003182177.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: ecg:E2348C_0043 predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-bindingdomain-like YP_003182178.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sse:Ssed_3230 putative electron transfer flavoprotein FixA YP_003182179.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: hne:HNE_1182 enoyl-CoA hydratase/isomerase family protein YP_003182180.1 KEGG: cti:RALTA_A1700 conserved hypothetical protein, DUF6; putative transmembrane protein YP_003182182.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sse:Ssed_3234 general substrate transporter YP_003182183.1 PFAM: MaoC domain protein dehydratase; KEGG: shl:Shal_0225 3-alpha,7-alpha, 12-alpha- trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_003182185.1 PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_2673 putative crotonobetaine/carnitine-CoA ligase YP_003182186.1 catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine YP_003182187.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA YP_003182188.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cko:CKO_02673 acetyl esterase YP_003182189.1 PFAM: major facilitator superfamily MFS_1; KEGG: transporter CgxT YP_003182190.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003182191.1 PFAM: Aldehyde Dehydrogenase; KEGG: dds:Ddes_1981 aldehyde dehydrogenase YP_003182192.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: oan:Oant_3106 acyl-CoA dehydrogenase domain protein YP_003182193.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: ecz:ECS88_1745 putative acyl-CoA dehydrogenase YP_003182194.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: seh:SeHA_C0081 protein FixA YP_003182195.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: slo:Shew_2678 electron transfer flavoprotein, alpha subunit YP_003182196.1 PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; HI0933 family protein; KEGG: spl:Spea_4041 FAD dependent oxidoreductase YP_003182197.1 KEGG: spl:Spea_4042 putative ferredoxin YP_003182198.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpe:KPK_4670 transcriptional regulator, LysR family YP_003182200.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpe:KPK_4670 transcriptional regulator, LysR family YP_003182201.1 PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_4171 major facilitator transporter YP_003182202.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: stm:STM1356 putative acyl-CoA dehydrogenase YP_003182203.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pla:Plav_2695 L-carnitine dehydratase/bile acid-inducible protein F YP_003182204.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: sat:SYN_02131 iron-sulfur flavoprotein YP_003182205.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_1685 enoyl-CoA hydratase/isomerase YP_003182206.1 acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids YP_003182207.1 PFAM: beta-lactamase domain protein; KEGG: pzu:PHZ_c2735 metallo-beta-lactamase family protein YP_003182208.1 PFAM: NUDIX hydrolase; KEGG: bra:BRADO4309 putative NUDIX hydrolase YP_003182209.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_02638 iron-sulphur-binding reductase YP_003182210.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: sat:SYN_02637 electron transfer flavoprotein alpha-subunit YP_003182211.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit YP_003182212.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bha:BH3799 acyl-CoA dehydrogenase YP_003182213.1 KEGG: dol:Dole_2962 vitamin B12 dependent methionine synthase activation region YP_003182214.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sdy:SDY_1783 putative acyl-CoA dehydrogenase YP_003182215.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dol:Dole_1455 NADH:flavin oxidoreductase/NADH oxidase YP_003182216.1 KEGG: bha:BH3394 hypothetical protein YP_003182217.1 PFAM: thioesterase superfamily protein; KEGG: dal:Dalk_3864 thioesterase superfamily protein YP_003182219.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: tgr:Tgr7_2153 2-isopropylmalate synthase YP_003182220.1 PFAM: Polysulphide reductase NrfD; KEGG: polysulphide reductase NrfD YP_003182221.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: scl:sce4705 molybdopterin oxidoreductase, iron-sulfur binding subunit YP_003182222.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dmsA; anaerobic dimethyl sulfoxide reductase chain A ; K07306 anaerobic dimethyl sulfoxide reductase subunit A YP_003182223.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: sus:Acid_1595 SPFH domain-containing protein/band 7 family protein YP_003182224.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bsu:BSU09060 hypothetical protein YP_003182225.1 PFAM: Polysulphide reductase NrfD; KEGG: acr:Acry_0343 polysulphide reductase, NrfD YP_003182226.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_003182227.1 KEGG: gur:Gura_3512 hypothetical protein YP_003182228.1 KEGG: aba:Acid345_3106 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase YP_003182229.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: sfu:Sfum_3022 acetolactate synthase, small subunit YP_003182230.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: pca:Pcar_1910 acetolactate synthase, large subunit, biosynthetic type YP_003182231.1 KEGG: dol:Dole_2036 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003182232.1 PFAM: sugar transferase; KEGG: bte:BTH_I1351 undecaprenyl-phosphate galactosephosphotransferase YP_003182233.1 PFAM: NGN domain protein; KEGG: fph:Fphi_1041 transcription antitermination protein NusG YP_003182234.1 PFAM: NGN domain protein YP_003182236.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: afw:Anae109_1227 endonuclease/exonuclease/phosphatase YP_003182238.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcr:BCAH187_A1419 DNA-binding protein YP_003182240.1 PFAM: beta-lactamase domain protein; KEGG: dal:Dalk_4746 beta-lactamase domain protein YP_003182241.1 KEGG: msu:MS1478 PfoR protein YP_003182242.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; KEGG: bcb:BCB4264_A4196 purine nucleoside phosphorylase YP_003182243.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: mxa:MXAN_4908 putative protein methyltransferase HemK YP_003182244.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: abu:Abu_0083 peptide chain release factor 1 YP_003182245.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; HI0933 family protein; KEGG: dol:Dole_1512 thioredoxin reductase YP_003182246.1 TIGRFAM: methionine-R-sulfoxide reductase; peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B; KEGG: ngk:NGK_2172 methionine sulfoxide reductase PilB YP_003182247.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: saz:Sama_2445 multi anti extrusion protein MatE YP_003182248.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: asu:Asuc_1312 MerR family transcriptional regulator YP_003182249.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: oca:OCAR_4481 thioredoxin YP_003182250.1 PFAM: Patatin; KEGG: apa:APP7_2083 hypothetical protein YP_003182251.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: mag:amb3362 Kef-type K+ transporter NAD- binding component YP_003182252.1 PFAM: protein of unknown function DUF74; KEGG: dac:Daci_3728 hypothetical protein YP_003182253.1 PFAM: sodium/hydrogen exchanger; KEGG: bcb:BCB4264_A0733 sodium/hydrogen exchanger family protein/TrkA domain protein YP_003182254.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase YP_003182255.1 KEGG: bcy:Bcer98_2228 hypothetical protein YP_003182256.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bcj:BCAL1381 LuxR superfamily regulatory protein YP_003182258.1 KEGG: bcr:BCAH187_A3050 hypothetical protein YP_003182259.1 PFAM: transcriptional regulator PadR family protein; KEGG: bcb:BCB4264_A3014 hypothetical protein YP_003182260.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: tgr:Tgr7_1450 threonyl-tRNA synthetase YP_003182261.1 KEGG: sus:Acid_2323 hypothetical protein YP_003182262.1 KEGG: bca:BCE_0370 hypothetical protein YP_003182265.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dvm:DvMF_1894 N-acylneuraminate-9-phosphate synthase YP_003182266.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: hch:HCH_05265 CMP-N-acetylneuraminic acid synthetase YP_003182268.1 KEGG: mpo:Mpop_3544 polysaccharide biosynthesis protein YP_003182269.1 PFAM: Capsule polysaccharide biosynthesis protein; KEGG: rde:RD1_4204 hypothetical protein YP_003182270.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: ftn:FTN_1426 UDP-glucose/GDP-mannose dehydrogenase YP_003182271.1 PFAM: glycosyl transferase family 2; KEGG: bsu:BSU35550 biosynthesis of teichuronic acid YP_003182272.1 PFAM: sugar transferase; KEGG: bpd:BURPS668_3223 sugar transferase family protein YP_003182273.1 PFAM: NGN domain protein; KEGG: hiq:CGSHiGG_06900 transcription antitermination protein NusG YP_003182274.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: slo:Shew_3490 XRE family transcriptional regulator YP_003182275.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: vei:Veis_2429 helix-turn-helix domain protein YP_003182276.1 KEGG: acb:A1S_3469 diaminopimelate decarboxylase YP_003182278.1 KEGG: smd:Smed_0926 response regulator PleD; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003182279.1 TIGRFAM: valyl-tRNA synthetase; KEGG: gbm:Gbem_1531 valyl-tRNA synthetase YP_003182280.1 KEGG: nar:Saro_3054 ATP-dependent protease ATP- binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; SMART: AAA ATPase YP_003182281.1 PFAM: peptidase S14 ClpP; KEGG: bcy:Bcer98_3694 ATP-dependent Clp protease proteolytic subunit YP_003182282.1 TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; peptidylprolyl isomerase FKBP-type; KEGG: bha:BH3053 trigger factor YP_003182285.1 PFAM: sodium:dicarboxylate symporter; KEGG: asa:ASA_2296 serine/threonine transporter SstT YP_003182286.1 KEGG: scl:sce6154 putative secreted protein YP_003182287.1 PFAM: protein of unknown function DUF88; KEGG: rme:Rmet_3395 hypothetical protein YP_003182288.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: mxa:MXAN_4733 RNA polymerase sigma-70 factor, ECF subfamily YP_003182289.1 KEGG: hypothetical protein YP_003182290.1 PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK4495 ABC transporter, permease YP_003182291.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A4956 efflux ABC transporter, ATP- binding protein YP_003182292.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ajs:Ajs_0194 two component transcriptional regulator YP_003182293.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bcz:BCZK0907 sensor histidine kinase YP_003182294.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bcy:Bcer98_1648 DegV family protein YP_003182295.1 PFAM: Domain of unknown function DUF1836; KEGG: bcb:BCB4264_A5576 hypothetical protein YP_003182296.1 PFAM: sodium/hydrogen exchanger; KEGG: bsu:BSU33420 hypothetical protein YP_003182297.1 KEGG: bsu:BSU37330 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase YP_003182298.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tgr:Tgr7_1383 acyltransferase-like protein YP_003182299.1 PFAM: C4-dicarboxylate anaerobic carrier; KEGG: asa:ASA_1683 hypothetical protein YP_003182300.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_003182301.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: vpa:VP2653 ornithine carbamoyltransferase YP_003182302.1 KEGG: bcu:BCAH820_0407 arginine deiminase; TIGRFAM: arginine deiminase; PFAM: amidinotransferase YP_003182303.1 PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: dar:Daro_1103 glutaredoxin family protein YP_003182304.1 TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; KEGG: sme:SMc03959 hypothetical protein YP_003182305.1 KEGG: bcr:BCAH187_A0210 hypothetical protein YP_003182307.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: cko:CKO_04330 putative deoxyribonucleotide triphosphate pyrophosphatase YP_003182308.1 KEGG: glo:Glov_2832 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003182309.1 PFAM: NADPH-dependent FMN reductase; KEGG: dds:Ddes_1487 NADPH-dependent FMN reductase YP_003182310.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sus:Acid_5432 YbaK/EbsC protein YP_003182311.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bcr:BCAH187_A3259 hypothetical protein YP_003182312.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcj:BCAL3076A putative DNA-binding protein YP_003182313.1 KEGG: shw:Sputw3181_0367 hypothetical protein YP_003182315.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: hso:HS_0447 hypothetical protein YP_003182316.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: xfm:Xfasm12_1292 toxin-like protein YP_003182317.1 KEGG: conserved hypothetical protein YP_003182318.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: gsu:GSU1709 SsrA-binding protein YP_003182319.1 PFAM: peptidase M42 family protein; peptidase M20; KEGG: pca:Pcar_1216 putative lyase/synthase YP_003182321.1 KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming); TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycosyl transferase family 20; trehalose- phosphatase YP_003182323.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: bha:BH0048 hypothetical protein YP_003182324.1 PFAM: conserved hypothetical protein; KEGG: vfi:VF_0669 hypothetical protein YP_003182325.1 KEGG: mlo:mlr0157 adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase YP_003182326.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: bha:BH0342 hypothetical protein YP_003182327.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: bha:BH0341 hypothetical protein YP_003182328.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: sat:SYN_02474 exonuclease N YP_003182329.1 TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801; KEGG: dvu:DVUA0132 CRISPR-associated Csh2 family protein YP_003182330.1 TIGRFAM: CRISPR-associated protein, Csd1 family; KEGG: mca:MCA0655 CRISPR-associated Csd1 family protein YP_003182331.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: xac:XAC3838 hypothetical protein YP_003182332.1 KEGG: dvm:DvMF_1971 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; metal dependent phophohydrolase; PFAM: DEAD/DEAH box helicase domain protein; metal- dependent phosphohydrolase HD sub domain; helicase domain protein; SMART: DEAD-like helicase YP_003182333.1 PFAM: NUDIX hydrolase; KEGG: hydrolase, NUDIX family protein YP_003182334.1 PFAM: protein of unknown function DUF523; GCN5- related N-acetyltransferase; KEGG: dvu:DVU0037 hypothetical protein YP_003182335.1 PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_3049 major facilitator transporter YP_003182336.1 KEGG: bcz:BCZK1618 SWF/SNF family helicase; PFAM: SNF2-related protein; zinc finger SWIM domain protein; SNF2 helicase associated domain protein ; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003182337.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; carboxyl transferase; KEGG: bha:BH3165 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_003182338.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; thioesterase superfamily protein; KEGG: afw:Anae109_1123 beta-hydroxyacyl-(acyl- carrier-protein) dehydratase FabZ YP_003182339.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: dal:Dalk_3309 3-oxoacyl-(acyl-carrier- protein) synthase 2 YP_003182340.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bha:BH2491 3-oxoacyl-(acyl-carrier protein) reductase YP_003182341.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: spe:Spro_1905 malonyl CoA-acyl carrier protein transacylase YP_003182342.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bpt:Bpet3429 2-nitropropane dioxygenase precursor YP_003182343.1 PFAM: phosphopantetheine-binding; KEGG: wsu:WS0630 acyl carrier protein YP_003182344.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dvm:DvMF_1437 transcriptional regulator, MarR family YP_003182345.1 KEGG: sat:SYN_00670 hypothetical protein YP_003182346.1 KEGG: bcb:BCB4264_A5243 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_003182347.1 KEGG: dol:Dole_2453 carboxyl-terminal protease; PFAM: peptidase S41; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003182348.1 PFAM: protein of unknown function DUF214; KEGG: bha:BH3601 cell-division protein YP_003182349.1 KEGG: bsu:BSU35260 cell-division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_003182350.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: pca:Pcar_2719 transketolase, C-terminal subunit YP_003182351.1 PFAM: Transketolase domain protein; KEGG: gur:Gura_0491 transketolase domain-containing protein YP_003182352.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: hypothetical protein ; K02836 peptide chain release factor RF-2 YP_003182353.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; SEC-C motif domain protein; KEGG: pca:Pcar_2323 preprotein translocase subunit SecA YP_003182354.1 KEGG: neu:NE2103 CopG family protein YP_003182355.1 PFAM: protein of unknown function DUF497; KEGG: amc:MADE_00610 hypothetical protein YP_003182356.1 PFAM: transcriptional activator domain; KEGG: afw:Anae109_1735 SARP family transcriptional regulator YP_003182357.1 PFAM: peptidase S58 DmpA; KEGG: dal:Dalk_5277 peptidase S58 DmpA YP_003182358.1 PFAM: Chloride channel core; KEGG: bcb:BCB4264_A5531 voltage-gated chloride channel family protein YP_003182359.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: gur:Gura_4129 iojap-like protein YP_003182360.1 KEGG: bcr:BCAH187_A4464 conserved hypothetical protein TIGR00488; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003182361.1 KEGG: gbm:Gbem_3777 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003182362.1 KEGG: hha:Hhal_2142 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase YP_003182363.1 KEGG: gsu:GSU3212 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein YP_003182364.1 TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; KEGG: bsu:BSU27920 GTPase ObgE YP_003182365.1 TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: smt:Smal_1120 ribosomal protein L27 YP_003182366.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: sal:Sala_2041 50S ribosomal protein L21 YP_003182367.1 KEGG: bha:BH3153 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; Helix-hairpin-helix domain protein class 2 YP_003182368.1 PFAM: transcriptional regulator domain protein; KEGG: scl:sce6445 hypothetical protein YP_003182369.1 KEGG: dvm:DvMF_2099 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp YP_003182370.1 PFAM: NLPA lipoprotein; KEGG: ccv:CCV52592_1073 D-methionine-binding lipoprotein MetQ YP_003182371.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: abb:ABBFA_002003 D-methionine transport system permease protein MetI YP_003182372.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfm:VFMJ11_0705 D-methionine ABC transporter, ATP-binding protein YP_003182373.1 PFAM: UspA domain protein; KEGG: dvl:Dvul_2511 UspA domain-containing protein YP_003182374.1 PFAM: glycosyl transferase group 1; KEGG: asu:Asuc_0104 glycosyl transferase group 1 YP_003182375.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bce:BC5273 UDP-bacillosamine synthetase YP_003182376.1 PFAM: sugar transferase; KEGG: bce:BC5270 undecaprenyl-phosphate galactosephosphotransferase YP_003182377.1 PFAM: Hpt domain protein; SMART: Hpt domain protein; KEGG: sse:Ssed_2865 signal transduction histidine kinase-like protein YP_003182378.1 PFAM: extracellular solute-binding protein family 1; KEGG: vco:VC0395_0545 ABC transporter, periplasmic substrate-binding protein YP_003182379.1 PFAM: Ethanolamine utilisation protein EutH; KEGG: pfl:PFL_5470 ethanolamine utilization protein EutH YP_003182380.1 PFAM: aminoglycoside phosphotransferase; Choline/ethanolamine kinase; protein of unknown function DUF227; KEGG: hip:CGSHiEE_05255 LicA YP_003182381.1 involved in choline phosphorylation for cell surface LPS epitopes; KEGG: hiq:CGSHiGG_00270 lic-1 operon protein YP_003182382.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bca:BCE_1438 iron compound ABC transporter, permease protein, putative YP_003182383.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_0981 ABC transporter related YP_003182384.1 KEGG: reh:H16_B1950 ABC-type transporter, periplasmic component YP_003182385.1 PFAM: polysaccharide biosynthesis protein; KEGG: bcb:BCB4264_A5393 polysaccharide biosynthesis protein YP_003182386.1 PFAM: LicD family protein; KEGG: hsm:HSM_1173 LicD family protein YP_003182387.1 PFAM: glycosyl transferase family 2; KEGG: sse:Ssed_2991 glycosyl transferase family protein YP_003182388.1 PFAM: LicD family protein; KEGG: hso:HS_1458 lipopolysaccharide choline phosphotransferase YP_003182390.1 PFAM: glycosyl transferase family 2; KEGG: bcj:BCAL3239 glucosyltransferase YP_003182391.1 PFAM: glycosyl transferase family 2; KEGG: dol:Dole_1296 glycosyl transferase family protein YP_003182392.1 PFAM: glycosyl transferase family 2; KEGG: ecm:EcSMS35_2262 glycosyl transferase, group 2 YP_003182393.1 PFAM: glycosyl transferase family 2; KEGG: cju:C8J_1091 lipooligosaccharide biosynthesis glycosyltransferase YP_003182395.1 PFAM: glycosyl transferase family 2; KEGG: sun:SUN_1735 glycosyl transferase YP_003182396.1 KEGG: sbm:Shew185_2898 dTDP-4-dehydrorhamnose 3,5- epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003182397.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: tmz:Tmz1t_2139 dTDP-glucose 4,6-dehydratase YP_003182398.1 PFAM: ABC-2 type transporter; KEGG: apl:APL_1463 putative ABC-transporter YP_003182399.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: apl:APL_1464 ABC transporter integral membrane subunit YP_003182400.1 KEGG: apl:APL_1470 hypothetical protein YP_003182401.1 KEGG: gme:Gmet_2472 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; NAD-dependent epimerase/dehydratase YP_003182402.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: shl:Shal_1487 glucose-1-phosphate thymidylyltransferase YP_003182403.1 PFAM: NLP/P60 protein; KEGG: bca:BCE_2878 NLP/P60 family protein YP_003182404.1 KEGG: lip:LIA028 hypothetical protein YP_003182405.1 PFAM: glycosyl transferase family 2; KEGG: amc:MADE_00968 putative glycosyltransferase family 2 protein YP_003182406.1 PFAM: cell wall hydrolase/autolysin; Spore coat protein CotH; GBS Bsp domain protein; SMART: cell wall hydrolase/autolysin; KEGG: bha:BH1295 hypothetical protein YP_003182407.1 PFAM: glycosyl transferase family 2; KEGG: bce:BC5427 cell wall biosynthesis glycosyltransferase YP_003182408.1 KEGG: dal:Dalk_2219 hypothetical protein YP_003182409.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: scl:sce1090 hypothetical protein YP_003182410.1 SMART: zinc finger CDGSH-type domain protein; KEGG: jan:Jann_1270 hypothetical protein YP_003182411.1 PFAM: beta-lactamase domain protein; KEGG: dol:Dole_2556 beta-lactamase domain- containing protein YP_003182412.1 PFAM: Amidohydrolase 3; amidohydrolase; KEGG: aba:Acid345_3443 amidohydrolase 3 YP_003182413.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: azc:AZC_1826 phosphomethylpyrimidine kinase YP_003182414.1 KEGG: sfu:Sfum_3508 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_003182415.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_003182416.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_003182417.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: gur:Gura_4245 glutamate-1-semialdehyde-2,1- aminomutase YP_003182418.1 KEGG: sfu:Sfum_4037 putative transcriptional regulator, AsnC family YP_003182419.1 PFAM: delta-aminolevulinic acid dehydratase; KEGG: sfu:Sfum_3057 delta-aminolevulinic acid dehydratase YP_003182420.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sat:SYN_02268 radical SAM superfamily protein YP_003182421.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dal:Dalk_4009 uroporphyrin-III C- methyltransferase YP_003182422.1 KEGG: pca:Pcar_3063 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_003182423.1 KEGG: mgm:Mmc1_3644 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like YP_003182424.1 TIGRFAM: siroheme synthase; KEGG: sat:SYN_02276 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase YP_003182425.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: sat:SYN_01522 thiamin pyrophosphokinase YP_003182426.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: scl:sce2167 ECF family RNA polymerase sigma factor YP_003182427.1 KEGG: hypothetical protein YP_003182428.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VPA1652 iron-dicitrate transporter ATP- binding subunit YP_003182429.1 PFAM: transport system permease protein; KEGG: bha:BH3291 ferrichrome ABC transporter (permease) YP_003182430.1 PFAM: periplasmic binding protein; KEGG: bca:BCE_4450 iron compound ABC transporter, iron compound-binding protein YP_003182431.1 PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_3058 radical SAM domain protein YP_003182432.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: kpn:KPN_02240 putative albicidin resistance protein YP_003182433.1 PFAM: DivIVA family protein; KEGG: bcy:Bcer98_2545 DivIVA family protein YP_003182434.1 PFAM: protein of unknown function YGGT; KEGG: bca:BCE_3943 YlmG protein YP_003182435.1 PFAM: protein of unknown function DUF552; KEGG: hypothetical protein YP_003182436.1 PFAM: alanine racemase domain protein; KEGG: dol:Dole_1179 alanine racemase domain- containing protein YP_003182437.1 PFAM: protein of unknown function DUF152; KEGG: afw:Anae109_2697 hypothetical protein YP_003182438.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: bha:BH2558 cell division protein FtsZ YP_003182439.1 KEGG: sse:Ssed_2570 hypothetical protein YP_003182440.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sse:Ssed_2569 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003182441.1 KEGG: spl:Spea_0261 aldehyde ferredoxin oxidoreductase; PFAM: Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase YP_003182443.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bbk:BARBAKC583_0813 cysteine desulfurase SufS YP_003182444.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: glo:Glov_0666 polypeptide-transport- associated domain protein FtsQ-type YP_003182445.1 KEGG: bha:BH2564 UDP-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003182446.1 TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: nwi:Nwi_1052 UDP-N-acetylmuramate--L-alanine ligase YP_003182447.1 KEGG: bha:BH2565 N-acetylglucosaminyl transferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain YP_003182448.1 PFAM: cell cycle protein; KEGG: bce:BC3911 stage V sporulation protein E YP_003182449.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: scl:sce1662 UDP-N-acetylmuramoylalanine-D- glutamate ligase YP_003182450.1 KEGG: ngk:NGK_1826 phospho-N-acetylmuramoyl- pentapeptide-transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-transf erase; PFAM: glycosyl transferase family 4 YP_003182451.1 TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: dol:Dole_2791 UDP-N-acetylmuramoylalanyl-D- glutamyl-2,6-diaminopimelate--D-alanyl- D-alanyl ligase YP_003182452.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: pca:Pcar_2207 UDP-N-acetylmuramyl tripeptide synthase YP_003182453.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: gsu:GSU3075 penicillin-binding protein YP_003182455.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: gme:Gmet_0404 methyltransferase YP_003182456.1 PFAM: protein of unknown function UPF0040; KEGG: bur:Bcep18194_A3636 cell division protein MraZ YP_003182457.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bha:BH1529 integrase/recombinase YP_003182458.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_003182459.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal YP_003182460.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: vsa:VSAL_I2858 probable CsgAB operon transcriptional regulatory protein YP_003182461.1 PFAM: Domain of unknown function DUF1846; KEGG: ATP-dependent Zn protease YP_003182462.1 SMART: Hedgehog/intein hint domain protein; KEGG: plu:plu1731 hypothetical protein YP_003182463.1 KEGG: hypothetical protein YP_003182464.1 KEGG: hypothetical protein YP_003182466.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: vha:VIBHAR_04848 transcriptional regulator MalT YP_003182468.1 PFAM: ATP-NAD/AcoX kinase; KEGG: mpt:Mpe_A3334 inorganic polyphosphate/ATP-NAD kinase YP_003182469.1 PFAM: virulence factor MVIN family protein; KEGG: gbm:Gbem_3339 integral membrane protein MviN YP_003182470.1 PFAM: regulatory protein LysR; KEGG: gsu:GSU2523 LysR family transcriptional regulator YP_003182471.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: acp:A2cp1_3684 fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003182473.1 TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; KEGG: bce:BC2204 asparagine synthetase [glutamine- hydrolyzing] YP_003182474.1 KEGG: oca:OCAR_5670 hypothetical protein YP_003182475.1 PFAM: protein of unknown function DUF1648 YP_003182476.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: bha:BH0156 methionine aminopeptidase YP_003182477.1 KEGG: gbm:Gbem_1209 hypothetical protein YP_003182478.1 KEGG: amc:MADE_01582 hypothetical protein YP_003182479.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: nar:Saro_3197 band 7 protein YP_003182480.1 TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: ank:AnaeK_2274 ribosomal protein L1 YP_003182481.1 KEGG: gbm:Gbem_0922 ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11 YP_003182482.1 KEGG: bsu:BSU01010 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein YP_003182483.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: erythrocyte binding protein YP_003182484.1 TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: gsu:GSU2870 50S ribosomal protein L33 YP_003182485.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: pmr:PMI2792 elongation factor Tu YP_003182486.1 KEGG: cjr:CJE1391 hypothetical protein YP_003182487.1 PFAM: PEBP family protein; KEGG: bsu:BSU38870 hypothetical protein YP_003182488.1 PFAM: NLP/P60 protein; KEGG: bcz:BCZK4888 cell wall endopeptidase YP_003182489.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: ppr:PBPRB1997 putative sodium/proline symporter YP_003182491.1 KEGG: scl:sce6239 hypothetical protein YP_003182492.1 PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: gdi:GDI2676 putative ATP-dependent helicase Lhr YP_003182493.1 PFAM: PilT protein domain protein; KEGG: glo:Glov_0067 PilT protein domain protein YP_003182495.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase YP_003182496.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: maq:Maqu_1715 DNA mismatch endonuclease vsr YP_003182497.1 PFAM: extracellular solute-binding protein family 5; KEGG: hdu:HD1669 putative ABC transporter periplasmic binding protein YP_003182498.1 PFAM: lipolytic protein G-D-S-L family; KEGG: afw:Anae109_1651 GDSL family lipase YP_003182499.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: apj:APJL_0860 ABC transporter, permease protein YP_003182500.1 KEGG: hap:HAPS_1116 ABC-type oligopeptide transport systems, ATP-binding/permease; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; binding-protein- dependent transport systems inner membrane component; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003182501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hsm:HSM_0785 ABC transporter related YP_003182502.1 PFAM: dihydrodipicolinate synthetase; KEGG: bov:BOV_A0349 dihydrodipicolinate synthase family protein YP_003182503.1 PFAM: ROK family protein; KEGG: mlo:mlr7234 glucose kinase YP_003182504.1 PFAM: putative N-acetylmannosamine-6-phosphate epimerase; KEGG: ent:Ent638_3230 N-acetylmannosamine-6- phosphate 2-epimerase YP_003182505.1 PFAM: sodium:dicarboxylate symporter; KEGG: bcy:Bcer98_2975 sodium:dicarboxylate symporter YP_003182506.1 KEGG: bha:BH0421 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Amidohydrolase 3 YP_003182507.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: bsu:BSU02360 glucosamine-6-phosphate isomerase YP_003182509.1 TIGRFAM: adenylate kinase; PFAM: adenylate kinase; KEGG: bcy:Bcer98_0125 adenylate kinase YP_003182510.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sfu:Sfum_1575 preprotein translocase subunit SecY YP_003182511.1 TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: pca:Pcar_0720 ribosomal protein L15 YP_003182512.1 TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: rru:Rru_A2670 50S ribosomal protein L30 YP_003182513.1 TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein; KEGG: bha:BH0151 30S ribosomal protein S5 YP_003182514.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: bcy:Bcer98_0120 50S ribosomal protein L18 YP_003182515.1 PFAM: ribosomal protein L6; KEGG: cak:Caul_1629 50S ribosomal protein L6 YP_003182516.1 PFAM: ribosomal protein S8; KEGG: bha:BH0148 30S ribosomal protein S8 YP_003182517.1 PFAM: ribosomal protein S14; KEGG: sat:SYN_03315 30S ribosomal protein S14 YP_003182518.1 PFAM: ribosomal protein L5; KEGG: abb:ABBFA_000444 ribosomal L5P family C- terminus family protein YP_003182519.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_003182520.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: pca:Pcar_0711 50S ribosomal protein L14 YP_003182521.1 PFAM: ribosomal protein S17; KEGG: bsu:BSU01250 30S ribosomal protein S17 YP_003182522.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: bsu:BSU01240 50S ribosomal protein L29 YP_003182523.1 TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: bha:BH0141 50S ribosomal protein L16 YP_003182524.1 KEGG: gsu:GSU2851 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein YP_003182525.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: bha:BH0139 50S ribosomal protein L22 YP_003182526.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: bha:BH0138 30S ribosomal protein S19 YP_003182527.1 TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; KEGG: bcu:BCAH820_0125 ribosomal protein L2 YP_003182528.1 PFAM: trigger factor domain protein; KEGG: bha:BH3053 trigger factor YP_003182529.1 PFAM: protein of unknown function DUF214; KEGG: hha:Hhal_1917 protein of unknown function DUF214 YP_003182530.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acp:A2cp1_2841 ABC transporter related YP_003182531.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sme:SM_b21561 putative two component response regulator protein YP_003182532.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bcz:BCZK0257 sensor histidine kinase YP_003182534.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: net:Neut_1418 Orn/DAP/Arg decarboxylase 2 YP_003182535.1 KEGG: gbm:Gbem_0719 hypothetical protein YP_003182536.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: sfu:Sfum_0781 membrane bound O-acyl transferase, MBOAT family protein YP_003182538.1 PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: bha:BH1953 hypothetical protein YP_003182539.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pag:PLES_31851 putative short-chain dehydrogenase YP_003182540.1 PFAM: metallophosphoesterase; KEGG: bcr:BCAH187_A0980 purple acid phosphatase/fibronectin domain protein YP_003182541.1 PFAM: amino acid permease-associated region; KEGG: pla:Plav_1143 amino acid permease-associated region YP_003182542.1 catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation YP_003182543.1 KEGG: pag:PLES_02881 agmatine deiminase; TIGRFAM: agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase YP_003182544.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sil:SPO1488 LuxR family transcriptional regulator YP_003182545.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: mch:Mchl_5136 molybdenum cofactor biosynthesis protein C YP_003182546.1 KEGG: sat:SYN_01960 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003182547.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_0569 ABC transporter-related protein YP_003182548.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RS05467 hypothetical protein YP_003182549.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bsu:BSU33380 hypothetical protein YP_003182550.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1325 ATPase YP_003182551.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1326 ATPase YP_003182552.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1327 dipeptide ABC transporter, permease protein YP_003182553.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1328 dipeptide ABC transporter, permease protein YP_003182554.1 PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_1329 dipeptide ABC transporter, solute-binding protein YP_003182556.1 KEGG: aeh:Mlg_0681 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4- type; NAD-dependent DNA ligase OB-fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein YP_003182557.1 KEGG: rpd:RPD_2508 hypothetical protein YP_003182558.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bca:BCE_3256 hypothetical protein YP_003182559.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: sat:SYN_02779 holo-synthase YP_003182560.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: gur:Gura_0121 glucosamine--fructose-6- phosphate aminotransferase, isomerizing YP_003182561.1 KEGG: bja:blr2278 MFS permease YP_003182562.1 KEGG: pap:PSPA7_6190 putative transcriptional regulator YP_003182564.1 PFAM: regulatory protein TetR; KEGG: dal:Dalk_2493 transcriptional regulator, TetR family YP_003182565.1 TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bcr:BCAH187_A1238 phage infection protein YP_003182566.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU02750 Na+ ABC transporter ATP-binding protein YP_003182567.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bov:BOV_0056 glyoxalase family protein YP_003182568.1 PFAM: YcfA family protein; KEGG: dvu:DVU0223 hypothetical protein YP_003182570.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: sus:Acid_7675 translation elongation factor 2 (EF-2/EF-G) YP_003182572.1 KEGG: spl:Spea_0368 cadherin YP_003182573.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bca:BCE_1118 ECF subfamily RNA polymerase sigma factor YP_003182574.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: glo:Glov_0448 ModD protein YP_003182576.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dal:Dalk_5014 amidohydrolase YP_003182577.1 KEGG: nis:NIS_1823 ATP-binding protein YP_003182579.1 PFAM: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; SMART: EAL domain protein; extracellular solute- binding protein family 3; GGDEF domain containing protein; KEGG: dds:Ddes_0639 diguanylate cyclase/phosphodiesterase YP_003182581.1 KEGG: hypothetical LOC582363 YP_003182582.1 PFAM: peptidase U32; KEGG: pca:Pcar_0411 U32 family peptidase YP_003182583.1 KEGG: glo:Glov_0404 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M) YP_003182584.1 KEGG: glo:Glov_3480 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase YP_003182585.1 KEGG: pca:Pcar_0103 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_003182586.1 KEGG: dal:Dalk_2650 serine O-acetyltransferase YP_003182587.1 PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: bsu:BSU00860 class III stress response- related ATPase YP_003182588.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); t-RNA- binding domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: mgm:Mmc1_1032 lysyl-tRNA synthetase YP_003182589.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: bha:BH1276 transcriptional elongation factor YP_003182590.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: sat:SYN_00926 sec-independent protein translocase protein YP_003182592.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: glo:Glov_0007 transposase IS116/IS110/IS902 family protein YP_003182593.1 KEGG: pcr:Pcryo_2410 hypothetical protein YP_003182594.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_003182597.1 KEGG: azc:AZC_0342 hypothetical protein YP_003182599.1 Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: asu:Asuc_1704 formate dehydrogenase, alpha subunit YP_003182600.1 unknown function YP_003182602.1 KEGG: bha:BH1815 hypothetical protein YP_003182603.1 TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: aba:Acid345_1483 malate dehydrogenase (NAD) YP_003182604.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ccs:CCNA_02399 23S rRNA methyltransferase YP_003182606.1 PFAM: Patatin; KEGG: slo:Shew_2735 patatin YP_003182607.1 KEGG: hypothetical protein YP_003182608.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: atc:AGR_L_3006 hypothetical protein YP_003182609.1 KEGG: transcriptional regulator, XRE family; TIGRFAM: transcriptional regulator, y4mF family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003182610.1 TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: HipA N-terminal domain protein ; K07154 YP_003182611.1 PFAM: TatD-related deoxyribonuclease; KEGG: pzu:PHZ_c1424 TatD-related deoxyribonuclease YP_003182612.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: tbd:Tbd_0522 HesA/MoeB/ThiF family protein YP_003182614.1 KEGG: hypothetical protein YP_003182615.1 PFAM: protein of unknown function DUF92 transmembrane; phosphatidate cytidylyltransferase; KEGG: bha:BH1418 hypothetical protein YP_003182616.1 PFAM: Squalene/phytoene synthase; KEGG: Os09g0555500; hypothetical protein ; K02291 phytoene synthase YP_003182617.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mxa:MXAN_0895 phytoene desaturase YP_003182618.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: transcriptional regulator, BadM/Rrf2 family YP_003182619.1 KEGG: mmw:Mmwyl1_1345 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase YP_003182620.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bha:BH3467 hypothetical protein YP_003182621.1 PFAM: SufBD protein; KEGG: bha:BH3470 hypothetical protein YP_003182622.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: acp:A2cp1_0896 cysteine desulfurase, SufS subfamily YP_003182623.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: lpf:lpl0640 hypothetical protein YP_003182624.1 PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: sat:SYN_01513 ATPase YP_003182625.1 KEGG: bcy:Bcer98_3920 bacitracin transport permease protein BCRB YP_003182626.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_2797 ABC transporter, ATPase subunit YP_003182627.1 KEGG: ret:RHE_CH02708 hypothetical protein YP_003182628.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: acp:A2cp1_2267 RNA polymerase, sigma-24 subunit, ECF subfamily YP_003182629.1 KEGG: abu:Abu_1172 putative DNA helicase YP_003182630.1 KEGG: spe:Spro_3043 hypothetical protein YP_003182631.1 KEGG: sus:Acid_3412 hypothetical protein YP_003182632.1 PFAM: Bile acid:sodium symporter; KEGG: bha:BH0858 sodium-dependent transporter YP_003182633.1 KEGG: gbm:Gbem_3383 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_003182634.1 TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: gur:Gura_3859 cysteine synthase A YP_003182636.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_003182637.1 catalyzes the rate limiting step in dNTP synthesis YP_003182638.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: abu:Abu_1122 two-component response regulator YP_003182639.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: shw:Sputw3181_0556 fumarate reductase/succinate dehydrogenase flavoprotein domain- containing protein YP_003182640.1 PFAM: histidine kinase A domain protein; ATP- binding region ATPase domain protein; SMART: histidine kinase A domain protein; ATP- binding region ATPase domain protein; KEGG: bha:BH0819 two-component sensor histidine kinase YP_003182641.1 KEGG: afw:Anae109_0249 hypothetical protein YP_003182642.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK0256 bacitracin ABC transporter, ATP- binding protein YP_003182643.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcy:Bcer98_0255 two component transcriptional regulator YP_003182644.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: sfu:Sfum_2781 C_GCAxxG_C_C family protein YP_003182645.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcy:Bcer98_1499 cell envelope-related transcriptional attenuator YP_003182646.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: reu:Reut_B5462 esterase/lipase/thioesterase YP_003182649.1 TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bba:Bd2517 alkyl hydroperoxide reductase, C22 subunit YP_003182650.1 PFAM: major facilitator superfamily MFS_1; KEGG: lip:LI0897 protein AraJ YP_003182651.1 PFAM: protein of unknown function DUF156; KEGG: hhe:HH0571 hypothetical protein YP_003182652.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dvm:DvMF_1917 heavy metal translocating P- type ATPase YP_003182653.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003182654.1 PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein YP_003182655.1 TIGRFAM: conserved hypothetical protein; KEGG: bsu:BSU13230 hypothetical protein YP_003182656.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_5276 ABC transporter, permease/ATP- binding protein YP_003182657.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rso:RSc1808 ABC transporter ATP-binding protein YP_003182658.1 PFAM: regulatory protein TetR; KEGG: bra:BRADO1663 TetR family transcriptional regulator YP_003182659.1 TIGRFAM: 2-aminoethylphosphonate/pyruvate transaminase; 2-aminoethylphosphonate aminotransferase; PFAM: aminotransferase class V; KEGG: bcy:Bcer98_1052 2-aminoethylphosphonate-- pyruvate transaminase YP_003182660.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate YP_003182661.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rso:RSc1809 ABC transporter ATP-binding protein YP_003182662.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rso:RSc1808 ABC transporter ATP-binding protein YP_003182663.1 PFAM: regulatory protein TetR; KEGG: afw:Anae109_3241 TetR family transcriptional regulator YP_003182665.1 TIGRFAM: conserved hypothetical protein YP_003182666.1 PFAM: cobalt transport protein; KEGG: hha:Hhal_0380 cobalt transport protein YP_003182667.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003182668.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pfo:Pfl01_2465 AraC family transcriptional regulator YP_003182669.1 PFAM: regulatory protein TetR; KEGG: transcriptional regulator, TetR family YP_003182670.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mxa:MXAN_5275 ABC transporter, permease/ATP- binding protein YP_003182671.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mxa:MXAN_5276 ABC transporter, permease/ATP- binding protein YP_003182672.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; FeoA family protein; nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: ade:Adeh_3293 ferrous iron transport protein B YP_003182673.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aav:Aave_0668 glyoxalase/bleomycin resistance protein/dioxygenase YP_003182674.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: bcy:Bcer98_2539 uracil-xanthine permease YP_003182675.1 PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: scl:sce8639 hypothetical protein YP_003182677.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: bha:BH0122 50S ribosomal protein L7/L12 YP_003182678.1 PFAM: ribosomal protein L10; KEGG: bcu:BCAH820_0110 ribosomal protein L10 YP_003182679.1 KEGG: bca:BCE_0201 hypothetical protein YP_003182680.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: swi:Swit_2731 aconitase YP_003182681.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mca:MCA3071 isocitrate dehydrogenase, NAD- dependent, putative YP_003182683.1 KEGG: reticulocyte-binding protein 2 (RBP2), like YP_003182684.1 PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: ban:BA5623 penicillin-binding protein YP_003182685.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: bha:BH3186 argininosuccinate lyase YP_003182686.1 KEGG: bsu:BSU29450 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase YP_003182687.1 TIGRFAM: arginine repressor; PFAM: arginine repressor; KEGG: aba:Acid345_4162 transcriptional regulator, ArgR family YP_003182688.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: glo:Glov_3150 acetylornithine and succinylornithine aminotransferase YP_003182689.1 TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: sfu:Sfum_0064 acetylglutamate kinase YP_003182690.1 KEGG: dvu:DVU0823 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_003182691.1 KEGG: hch:HCH_06245 N-acetyl-gamma-glutamyl- phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_003182692.1 PFAM: plasmid stabilization system YP_003182693.1 TIGRFAM: prevent-host-death family protein; KEGG: ccv:CCV52592_2220 prevent-host-death family protein YP_003182694.1 PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: ank:AnaeK_4411 polysaccharide biosynthesis protein CapD YP_003182695.1 PFAM: glutamate--cysteine ligase GCS2; KEGG: rsq:Rsph17025_0214 glutamate--cysteine ligase YP_003182696.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gur:Gura_0178 peptidylprolyl isomerase, FKBP- type YP_003182697.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: peptidylprolyl isomerase FKBP-type YP_003182700.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: plu:plu4288 hypothetical protein YP_003182701.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: ank:AnaeK_3618 fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003182702.1 KEGG: gur:Gura_0550 hypothetical protein YP_003182703.1 KEGG: dol:Dole_2197 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; SEC-C motif domain protein YP_003182704.1 PFAM: SNARE associated Golgi protein; KEGG: dal:Dalk_0616 SNARE associated Golgi protein YP_003182705.1 PFAM: protein of unknown function DUF86; KEGG: aba:Acid345_1969 protein of unknown function DUF86 YP_003182706.1 PFAM: DNA polymerase beta domain protein region; KEGG: mmw:Mmwyl1_3031 DNA polymerase beta subunit YP_003182707.1 KEGG: ade:Adeh_1971 phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit YP_003182708.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: bha:BH3111 phenylalanyl-tRNA synthetase subunit alpha YP_003182709.1 KEGG: hypothetical protein YP_003182712.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcz:pE33L54_0023 transcriptional regulator YP_003182713.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pla:Plav_1269 GCN5-related N- acetyltransferase YP_003182714.1 PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: bcb:BCB4264_A5238 transcriptional regulator YP_003182715.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: dvm:DvMF_1609 cytoplasmic chaperone TorD family protein YP_003182716.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ccv:CCV52592_2101 radical SAM family protein YP_003182719.1 PFAM: Polysulphide reductase NrfD; KEGG: dol:Dole_0454 polysulphide reductase NrfD YP_003182720.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA5630 molybdenum enzyme, medium subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003182721.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dar:Daro_2584 molybdopterin oxidoreductase:molydopterin dinucleotide-binding region YP_003182722.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: bid:Bind_3454 band 7 protein YP_003182723.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: cja:CJA_0601 transcriptional regulator, GntR family YP_003182724.1 PFAM: Polysulphide reductase NrfD; KEGG: eba:ebA1013 molybdenum enzyme of unknown function, small subunit, membrane anchor YP_003182725.1 PFAM: protein of unknown function DUF161; KEGG: bha:BH1258 hypothetical protein YP_003182726.1 KEGG: bph:Bphy_2090 6-phosphogluconolactonase YP_003182727.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: rso:RSc2375 hypothetical protein YP_003182728.1 KEGG: pat:Patl_0762 putative transmembrane protein YP_003182730.1 PFAM: Polysulphide reductase NrfD; KEGG: dol:Dole_0454 polysulphide reductase NrfD YP_003182731.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA5630 molybdenum enzyme, medium subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003182732.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: seg:SG0907 anaerobic dimethyl sulfoxide reductase chain A precursor YP_003182734.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcy:Bcer98_1077 regulatory protein GntR HTH YP_003182735.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: bcm:Bcenmc03_1713 band 7 protein YP_003182736.1 PFAM: Polysulphide reductase NrfD; KEGG: afw:Anae109_4106 polysulphide reductase NrfD YP_003182737.1 KEGG: bca:BCE_3728 hypothetical protein YP_003182738.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcz:BCZK1621 transcriptional regulator YP_003182739.1 PFAM: regulatory protein TetR; KEGG: bha:BH0719 TetR/AcrR family transcriptional regulator YP_003182740.1 PFAM: transposase mutator type; KEGG: rpc:RPC_3939 transposase, mutator type YP_003182742.1 KEGG: bha:BH0721 hypothetical protein YP_003182743.1 KEGG: bha:BH0720 hypothetical protein YP_003182744.1 PFAM: protein of unknown function DUF901; KEGG: bcy:Bcer98_0087 hypothetical protein YP_003182745.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: bsu:BSU00960 hypothetical protein YP_003182746.1 PFAM: protein of unknown function UPF0126; KEGG: hypothetical protein YP_003182748.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein; KEGG: eca:ECA2454 methylated DNA--protein-cysteine methyltransferase YP_003182749.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: vco:VC0395_A1323 chaperone protein TorD YP_003182750.1 PFAM: Polysulphide reductase NrfD; KEGG: dol:Dole_0454 polysulphide reductase NrfD YP_003182751.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA5630 molybdenum enzyme, medium subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003182752.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pmr:PMI0170 anaerobic dimethyl sulfoxide reductase, molybdopterin-binding subunit YP_003182753.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: sus:Acid_1595 SPFH domain-containing protein/band 7 family protein YP_003182754.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcz:BCZK3976 GntR family transcriptional regulator YP_003182755.1 PFAM: Polysulphide reductase NrfD; KEGG: acr:Acry_0343 polysulphide reductase, NrfD YP_003182756.1 KEGG: bha:BH3707 acetobutylicum phosphotransbutyrylase YP_003182757.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0338 transcriptional regulator, XRE family YP_003182758.1 PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: sit:TM1040_3405 ParB-like nuclease YP_003182761.1 PFAM: sugar transferase; KEGG: afw:Anae109_1412 undecaprenyl-phosphate galactose phosphotransferase YP_003182762.1 PFAM: glycosyl transferase family 2; KEGG: acb:A1S_0060 hypothetical protein YP_003182763.1 KEGG: dvl:Dvul_0365 TPR repeat-containing protein YP_003182764.1 KEGG: hip:CGSHiEE_07680 putative polysaccharide polymerase YP_003182765.1 PFAM: glycosyl transferase group 1; KEGG: mca:MCA1433 glycosyl transferase, group 1 family protein YP_003182766.1 PFAM: polysaccharide biosynthesis protein; KEGG: msu:MS0657 RfbX protein YP_003182767.1 PFAM: LicD family protein; KEGG: hso:HS_1458 lipopolysaccharide choline phosphotransferase YP_003182768.1 PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; NAD-dependent epimerase/dehydratase; KEGG: bpt:Bpet2302 sugar nucleotide epimerase / oxidoreductase YP_003182769.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pca:Pcar_1141 pyridoxal-phosphate-dependent aminotransferase enzyme YP_003182770.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: hch:HCH_04824 serine acetyltransferase YP_003182771.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: cff:CFF8240_1549 acylneuraminate cytidylyltransferase YP_003182772.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: cff:CFF8240_1556 sialic acid synthase YP_003182773.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; KEGG: bha:BH3379 UDP-glucose 4-epimerase YP_003182774.1 KEGG: ppw:PputW619_3708 GCN5-related N- acetyltransferase YP_003182775.1 PFAM: protein of unknown function DUF201; ATP- dependent carboxylate-amine ligase domain protein ATP- grasp; phosphoribosylglycinamide synthetase; KEGG: gme:Gmet_0449 putative glycolate oxidase YP_003182776.1 PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: hiq:CGSHiGG_00270 lic-1 operon protein YP_003182777.1 KEGG: dds:Ddes_1354 hypothetical protein YP_003182778.1 KEGG: dds:Ddes_1353 hypothetical protein YP_003182779.1 PFAM: glycosyl transferase family 14; KEGG: bbt:BBta_1001 hypothetical protein YP_003182780.1 PFAM: polysaccharide biosynthesis protein; KEGG: pcr:Pcryo_0621 polysaccharide biosynthesis protein YP_003182781.1 KEGG: cps:CPS_3253 putative polysaccharide pyruvyl transferase YP_003182782.1 PFAM: glycosyl transferase family 2; KEGG: bca:BCE_5387 glycosyl transferase, group 2 family protein YP_003182783.1 KEGG: bsu:BSU34310 hypothetical protein YP_003182784.1 KEGG: ngo:NGO2125 putative acetyltransferase YP_003182785.1 PFAM: LicD family protein; KEGG: vpa:VP1322 putative LicD1 protein YP_003182786.1 PFAM: glycosyl transferase group 1; KEGG: nmu:Nmul_A0253 glycosyl transferase, group 1 YP_003182787.1 KEGG: bat:BAS5117 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003182788.1 KEGG: bac:BamMC406_3703 WecB/TagA/CpsF family glycosyl transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_003182789.1 PFAM: sugar transferase; KEGG: afw:Anae109_1412 undecaprenyl-phosphate galactose phosphotransferase YP_003182790.1 PFAM: NGN domain protein; SMART: NGN domain protein; KEGG: hhe:HH0366 transcription antitermination protein NusG YP_003182791.1 PFAM: PHP domain protein; KEGG: pha:PSHAa1779 capsular polysaccharide biosynthesis, CapC YP_003182792.1 TIGRFAM: capsular exopolysaccharide family; KEGG: bha:BH3668 capsular polysaccharide biosynthesis YP_003182793.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bha:BH3669 capsular polysaccharide biosynthesis YP_003182794.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bsu:BSU35520 hypothetical protein YP_003182795.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: swd:Swoo_0703 DEAD/DEAH box helicase domain- containing protein YP_003182796.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: pca:Pcar_1840 formate dehydrogenase accessory protein YP_003182797.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA5630 molybdenum enzyme, medium subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003182798.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: eba:ebA5622 molybdenum enzyme, large subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003182799.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: sus:Acid_1595 SPFH domain-containing protein/band 7 family protein YP_003182800.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcy:Bcer98_2775 regulatory protein GntR HTH YP_003182801.1 PFAM: Polysulphide reductase NrfD; KEGG: eba:ebA1013 molybdenum enzyme of unknown function, small subunit, membrane anchor YP_003182802.1 PFAM: helix-turn-helix domain protein; CI repressor; SMART: helix-turn-helix domain protein; KEGG: bcz:BCZK1621 transcriptional regulator YP_003182803.1 PFAM: ABC-1 domain protein; protein of unknown function RIO1; KEGG: dol:Dole_0647 hypothetical protein YP_003182804.1 KEGG: fau YP_003182806.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rlt:Rleg2_2742 protein of unknown function DUF6 transmembrane YP_003182807.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcb:BCB4264_A3211 transcriptional regulator, LysR family YP_003182808.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bce:BC5162 pyrophosphatase PpaX YP_003182809.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon- binding domain protein; KEGG: bcy:Bcer98_2471 prolyl-tRNA synthetase YP_003182810.1 KEGG: gme:Gmet_1353 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase; PFAM: IspG family protein YP_003182811.1 PFAM: peptidase M50; KEGG: gdi:GDI2146 putative metalloprotease MmpA YP_003182812.1 KEGG: gur:Gura_4195 hypothetical protein YP_003182814.1 KEGG: 1-deoxy-D-xylulose 5-phosphate reductoisomerase ; K00099 1-deoxy-D-xylulose-5- phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein YP_003182815.1 PFAM: phosphatidate cytidylyltransferase; KEGG: afw:Anae109_3705 phosphatidate cytidylyltransferase YP_003182816.1 KEGG: aba:Acid345_1417 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003182817.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: dde:Dde_1128 ribosome recycling factor YP_003182818.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: gme:Gmet_1252 uridylate kinase YP_003182819.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1612 UbiE/COQ5 methyltransferase YP_003182821.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: xca:xccb100_3034 periplasmic serine protease MucD YP_003182823.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dal:Dalk_4478 iron-containing alcohol dehydrogenase YP_003182824.1 PFAM: Aldehyde Dehydrogenase; KEGG: bcb:BCB4264_A1336 aldehyde dehydrogenase (NAD) family protein YP_003182825.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dal:Dalk_2373 beta-lactamase domain protein YP_003182826.1 PFAM: transcription activator effector binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: bce:BC2514 MerR family transcriptional regulator YP_003182827.1 KEGG: bcr:BCAH187_A4955 S-layer domain protein YP_003182828.1 KEGG: bsu:BSU25130 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2 YP_003182829.1 KEGG: ccs:CCNA_03122 hypothetical protein YP_003182830.1 PFAM: cobalt transport protein; KEGG: bsu:BSU01470 hypothetical protein YP_003182831.1 KEGG: bsu:BSU10010 hypothetical protein YP_003182832.1 PFAM: regulatory protein TetR; KEGG: rlt:Rleg2_0103 transcriptional regulator, TetR family YP_003182833.1 KEGG: bsu:BSU03840 hypothetical protein; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; CBS domain containing protein; SMART: CBS domain containing protein YP_003182834.1 KEGG: pnu:Pnuc_1095 outer membrane autotransporter YP_003182835.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: acp:A2cp1_0769 DNA repair protein RecN YP_003182836.1 KEGG: ade:Adeh_0433 exonuclease SbcC YP_003182837.1 KEGG: rpi:Rpic_1623 hypothetical protein YP_003182838.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tdn:Suden_1782 ATPase YP_003182839.1 PFAM: protein of unknown function DUF1016; KEGG: mmw:Mmwyl1_3201 hypothetical protein YP_003182840.1 PFAM: TipAS antibiotic-recognition domain protein; regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: bcr:BCAH187_A5109 putative transcriptional activator TipA YP_003182841.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_0945 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003182842.1 PFAM: regulatory protein TetR; KEGG: dal:Dalk_2422 putative transcriptional regulator, TetR family YP_003182843.1 KEGG: sun:SUN_0880 histidine decarboxylase; TIGRFAM: histidine decarboxylase, pyruvoyl type; PFAM: histidine carboxylase PI chain YP_003182844.1 PFAM: amino acid permease-associated region; KEGG: ecz:ECS88_4708 putative membrane protein of unknown function YP_003182845.1 PFAM: protein of unknown function DUF368; KEGG: vha:VIBHAR_04844 hypothetical protein YP_003182846.1 KEGG: dds:Ddes_0527 flavodoxin family protein YP_003182847.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_003182848.1 PFAM: arsenate reductase and related; KEGG: bcy:Bcer98_3587 arsenate reductase and related YP_003182849.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gur:Gura_1529 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003182851.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bcr:BCAH187_A3079 transcriptional regulator, GntR family YP_003182852.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A4332 ABC transporter, ATP- binding protein YP_003182853.1 KEGG: bat:BAS4124 hypothetical protein YP_003182854.1 KEGG: maq:Maqu_2349 TRAP transporter, 4TM/12TM fusion protein YP_003182855.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: transcriptional regulator, BadM/Rrf2 family YP_003182856.1 PFAM: glycosyl transferase family 51; KEGG: dol:Dole_2534 1A family penicillin-binding protein YP_003182857.1 PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25; KEGG: mlo:mlr7748 lysozyme precursor YP_003182858.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05460 macrolide-efflux transmembrane protein YP_003182859.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bcm:Bcenmc03_6905 short-chain dehydrogenase/reductase SDR YP_003182860.1 KEGG: bsu:BSU35170 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase domain protein YP_003182861.1 KEGG: gur:Gura_3302 hypothetical protein YP_003182862.1 PFAM: conserved hypothetical protein; KEGG: rme:Rmet_3872 conserved hypothetical protein 698 YP_003182863.1 KEGG: dephospho-CoA kinase ; K00859 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_003182864.1 KEGG: gme:Gmet_0873 tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase YP_003182865.1 PFAM: acyltransferase 3; KEGG: bsu:BSU27140 hypothetical protein YP_003182866.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: dvl:Dvul_1118 xanthine/uracil/vitamin C permease YP_003182867.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: bba:Bd1066 30S ribosomal protein S1 YP_003182868.1 PFAM: ferric-uptake regulator; KEGG: dps:DP2867 ferric uptake regulatory protein YP_003182869.1 PFAM: nitrogen regulatory protein P-II; KEGG: dvm:DvMF_0865 nitrogen regulatory protein P- II YP_003182870.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: sfu:Sfum_0727 ammonium transporter YP_003182871.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_1731 hypothetical protein YP_003182872.1 KEGG: gbm:Gbem_3597 flavocytochrome c YP_003182873.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: acp:A2cp1_1861 flavocytochrome c YP_003182874.1 KEGG: ses:SARI_03099 hypothetical protein YP_003182875.1 PFAM: protein of unknown function DUF1508; KEGG: efe:EFER_2167 hypothetical protein YP_003182876.1 PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: eba:ebA6850 LuxR family DNA-binding response regulator YP_003182877.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal YP_003182878.1 KEGG: surface antigen BspA-like YP_003182879.1 KEGG: bha:BH1805 hypothetical protein YP_003182880.1 PFAM: phosphate transporter; KEGG: sfu:Sfum_2275 phosphate transporter YP_003182881.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: gsu:GSU0686 1-deoxy-D-xylulose-5-phosphate synthase YP_003182882.1 PFAM: Exonuclease VII small subunit YP_003182883.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: bcb:BCB4264_A4292 N utilization substance protein B YP_003182884.1 PFAM: protein of unknown function DUF322; KEGG: bha:BH2786 hypothetical protein YP_003182885.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: glo:Glov_1598 acetyl-CoA carboxylase, biotin carboxylase YP_003182886.1 KEGG: pag:PLES_58301 putative transcarboxylase subunit; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Conserved carboxylase region; pyruvate carboxyltransferase; biotin/lipoyl attachment domain- containing protein YP_003182887.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rbo:A1I_04105 putative transcriptional regulator YP_003182888.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor KOW domain protein; Elongation factor P ; Elongation factor P/YeiP protein; KEGG: bha:BH2799 elongation factor P YP_003182890.1 PFAM: peptidase M24; creatinase; KEGG: bcy:Bcer98_2892 peptidase M24 YP_003182891.1 KEGG: bcy:Bcer98_2893 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase class II YP_003182892.1 KEGG: mgm:Mmc1_2319 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_003182893.1 PFAM: shikimate kinase; KEGG: bav:BAV0073 shikimate kinase I YP_003182894.1 KEGG: gme:Gmet_0976 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase YP_003182895.1 PFAM: Shikimate dehydrogenase substrate binding domain protein; KEGG: gme:Gmet_1392 shikimate dehydrogenase YP_003182896.1 TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: bcr:BCAH187_A4469 hydrolase, HAD subfamily IIIA YP_003182897.1 PFAM: aminodeoxychorismate lyase; KEGG: dal:Dalk_3985 aminodeoxychorismate lyase YP_003182898.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: afw:Anae109_2535 Holliday junction resolvase YqgF YP_003182899.1 KEGG: sat:SYN_02026 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD YP_003182900.1 PFAM: protein of unknown function UPF0118; KEGG: bcy:Bcer98_1995 hypothetical protein YP_003182901.1 KEGG: mucin-associated surface protein (MASP) YP_003182902.1 PFAM: AAA ATPase central domain protein; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pca:Pcar_2328 recombination factor protein RarA YP_003182903.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcy:Bcer98_0751 helix-turn-helix domain- containing protein YP_003182904.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sus:Acid_6283 integral membrane sensor signal transduction histidine kinase YP_003182905.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: acp:A2cp1_4151 two component transcriptional regulator, winged helix family YP_003182906.1 KEGG: vco:VC0395_0066 phosphate ABC transporter, ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003182907.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0371 ABC-type phosphate transport system, permease component YP_003182908.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VPA1460 phosphate ABC transporter, permease protein YP_003182909.1 KEGG: swp:swp_5140 phosphate ABC transporter, periplasmic phosphate-binding protein YP_003182910.1 KEGG: pla:Plav_0415 hypothetical protein YP_003182911.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gsu:GSU2357 hypothetical protein YP_003182912.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: dds:Ddes_1073 anaerobic ribonucleoside- triphosphate reductase activating protein YP_003182913.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_003182915.1 KEGG: gme:Gmet_0504 bifunctional homocysteine S- methyltransferase/5,10-methylenetetrahydrofolate reductase protein YP_003182916.1 KEGG: nar:Saro_0392 hypothetical protein YP_003182917.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ppd:Ppro_2951 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_003182918.1 PFAM: extracellular solute-binding protein family 1; KEGG: bsu:BSU32600 hypothetical protein YP_003182919.1 KEGG: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003182920.1 PFAM: Nucleotidyl transferase; KEGG: cti:RALTA_A2251 glucose-1-phosphate uridylyltransferase YP_003182922.1 PFAM: cytochrome c assembly protein; KEGG: dvu:DVU1047 cytochrome c-type biogenesis protein CcmC YP_003182923.1 PFAM: cytochrome c-type biogenesis protein CcmB; ABC-2 type transporter; KEGG: sus:Acid_4237 cytochrome c-type biogenesis protein CcmB YP_003182924.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_0013 daunorubicin resistance ABC transporter ATP-binding subunit YP_003182925.1 PFAM: cytochrome c assembly protein; KEGG: sus:Acid_4232 cytochrome c assembly protein YP_003182926.1 KEGG: hch:HCH_04365 cytochrome c-type biogenesis protein CcmE YP_003182927.1 KEGG: gbm:Gbem_3597 flavocytochrome c YP_003182928.1 PFAM: cytochrome c552; KEGG: sat:SYN_02616 cytochrome c552 YP_003182929.1 PFAM: protein of unknown function DUF214; KEGG: pde:Pden_5133 ABC transporter related YP_003182930.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_7063 putative ABC transporter, ATP- binding protein YP_003182931.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcz:pE33L9_0006 transcriptional regulator YP_003182932.1 PFAM: Resolvase domain; KEGG: glo:Glov_0859 resolvase domain YP_003182934.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003182939.1 PFAM: endodeoxyribonuclease RusA; KEGG: rsh:Rsph17029_0662 endodeoxyribonuclease RusA YP_003182942.1 KEGG: apj:APJL_0347 putative lipoprotein YP_003182943.1 PFAM: ERF family protein; KEGG: seh:SeHA_C0373 essential recombination function protein YP_003182945.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: dac:Daci_0817 single-strand binding protein YP_003182946.1 KEGG: dps:DP2024 hypothetical protein YP_003182947.1 KEGG: hha:Hhal_0638 IstB domain protein ATP-binding protein YP_003182948.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: bch:Bcen2424_6933 DNA methylase N-4/N-6 domain-containing protein YP_003182949.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dde:Dde_1300 adenine specific DNA methyltransferase, putative YP_003182952.1 TIGRFAM: phage N-6-adenine-methyltransferase; PFAM: DNA N-6-adenine-methyltransferase; KEGG: mms:mma_2215 phage N-6-adenine methyltransferase YP_003182953.1 KEGG: aav:Aave_1600 hypothetical protein YP_003182956.1 PFAM: protein of unknown function UPF0027; KEGG: bcz:BCZK2717 hypothetical protein YP_003182962.1 TIGRFAM: phage terminase, large subunit, PBSX family; PFAM: terminase large subunit; KEGG: bcy:Bcer98_2947 PBSX family phage terminase large subunit YP_003182964.1 KEGG: GK24224 gene product from transcript GK24224- RA YP_003182966.1 KEGG: hypothetical protein YP_003182967.1 KEGG: bcy:Bcer98_2943 hypothetical protein YP_003182973.1 PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: ypg:YpAngola_0080 Ig-like domain-containing protein YP_003182976.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: bce:BC1906 phage protein YP_003182977.1 TIGRFAM: phage tail component; KEGG: bha:BH3517 hypothetical protein YP_003182978.1 TIGRFAM: phage minor structural protein; KEGG: bha:BH0962 hypothetical protein YP_003182980.1 KEGG: ecs:ECs1650 putative tail fiber protein YP_003182983.1 KEGG: shw:Sputw3181_2465 RNA-directed DNA polymerase (reverse transcriptase) YP_003182987.1 KEGG: baa:BA_1154 hypothetical protein YP_003182989.1 PFAM: CHAP domain containing protein; KEGG: sus:Acid_5388 peptidoglycan binding domain- containing protein YP_003182990.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pzu:PHZ_c3472 transcriptional regulator, Cro/CI family YP_003182991.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sat:SYN_02268 radical SAM superfamily protein YP_003182993.1 KEGG: shw:Sputw3181_0118 flavocytochrome c; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase YP_003182994.1 PFAM: ApbE family lipoprotein; KEGG: scl:sce8631 putative thiamine biosynthesis lipoprotein ApbE YP_003182995.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bcj:BCAL1381 LuxR superfamily regulatory protein YP_003182996.1 KEGG: bcu:BCAH820_0048 veg protein YP_003182998.1 PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase; KEGG: bha:BH0057 dimethyladenosine transferase YP_003182999.1 PFAM: NADPH-dependent FMN reductase; KEGG: dps:DP0917 hypothetical protein YP_003183000.1 TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: aba:Acid345_2030 methionyl-tRNA synthetase YP_003183001.1 PFAM: lipase class 3; KEGG: lipase YP_003183002.1 KEGG: pzu:PHZ_c2306 hypothetical protein YP_003183003.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cak:Caul_4362 XRE family transcriptional regulator YP_003183005.1 KEGG: bca:BCE_3182 hypothetical protein YP_003183006.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BSU03840 hypothetical protein YP_003183007.1 PFAM: protein of unknown function DUF45; KEGG: zmo:ZMO0010 zinc metalloprotease YP_003183008.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: bcb:BCB4264_A1678 putative MATE efflux family protein YP_003183009.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rce:RC1_3036 hypothetical protein YP_003183010.1 PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_0197 acylglycerol lipase YP_003183011.1 KEGG: pca:Pcar_1199 methylase of chemotaxis methyl- accepting protein, CheR-like; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type YP_003183012.1 PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: mms:mma_0161 methyl-accepting chemotaxis transducer transmembrane protein YP_003183013.1 KEGG: ccs:CCNA_00630 chemotaxis histidine kinase protein cheAII YP_003183015.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rde:RD1_0308 glycerophosphoryl diester phosphodiesterase family protein YP_003183016.1 PFAM: alpha/beta hydrolase fold; KEGG: sat:SYN_02434 hydrolase or acyltransferase YP_003183017.1 PFAM: glutathione peroxidase; KEGG: maq:Maqu_1771 glutathione peroxidase YP_003183019.1 KEGG: reh:H16_B0685 hypothetical protein YP_003183020.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: ccv:CCV52592_1797 CoA-substrate-specific enzyme activase domain-containing protein YP_003183021.1 PFAM: regulatory protein TetR; KEGG: bcb:BCB4264_A3106 transcriptional regulator, TetR family YP_003183022.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn- helix type 11 domain protein; KEGG: glo:Glov_1317 biotin/acetyl-CoA-carboxylase ligase YP_003183023.1 PFAM: protein of unknown function DUF711; KEGG: nma:NMA1908 hypothetical protein YP_003183024.1 KEGG: glo:Glov_1224 PilT protein domain protein YP_003183026.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003183027.1 KEGG: rfr:Rfer_0499 hypothetical protein YP_003183028.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: reu:Reut_B5790 fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal:FAD dependent oxidoreductase YP_003183029.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: slo:Shew_3181 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003183030.1 KEGG: bbr:BB2334 putative transporter YP_003183031.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: csa:Csal_1191 transcriptional regulator, LuxR family YP_003183032.1 PFAM: protein of unknown function DUF307; KEGG: vfm:VFMJ11_1530 conserved hyhpothetical protein YP_003183033.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: mes:Meso_0482 fumarate reductase/succinate dehydrogenase flavoprotein-like YP_003183034.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rpi:Rpic_4005 transcriptional regulator, LuxR family YP_003183035.1 KEGG: ppd:Ppro_1155 hemolysin A; TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003183036.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: acp:A2cp1_3684 fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003183037.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: vha:VIBHAR_03493 hypothetical protein YP_003183039.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; KEGG: dde:Dde_0254 aspartate semialdehyde dehydrogenase YP_003183040.1 KEGG: pca:Pcar_1006 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_003183043.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: rec:RHECIAT_CH0002310 putative phosphoglycerate dehydrogenase protein YP_003183044.1 PFAM: amidinotransferase; KEGG: spe:Spro_3188 amidinotransferase YP_003183045.1 PFAM: C4-dicarboxylate anaerobic carrier; KEGG: vsp:VS_2923 hypothetical protein YP_003183046.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: bca:BCE_0473 ornithine carbamoyltransferase YP_003183047.1 PFAM: Na+/solute symporter; KEGG: pfl:PFL_1573 sodium-solute symporter, putative YP_003183048.1 KEGG: bha:BH1072 hypothetical protein YP_003183050.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcb:BCB4264_A0458 hypothetical protein YP_003183052.1 PFAM: protein of unknown function UPF0126; KEGG: mag:amb1944 hypothetical protein YP_003183053.1 PFAM: protein of unknown function DUF47; KEGG: ppd:Ppro_3584 hypothetical protein YP_003183054.1 PFAM: phosphate transporter; KEGG: bcr:BCAH187_A1614 phosphate transporter family protein YP_003183055.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcy:Bcer98_3390 major facilitator transporter YP_003183056.1 PFAM: beta-lactamase domain protein; KEGG: dol:Dole_2072 beta-lactamase domain- containing protein YP_003183057.1 KEGG: bha:BH1242 GTP pyrophosphokinase (stringent response); TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003183058.1 KEGG: bce:BC4403 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; helicase domain protein; DEAD/DEAH box helicase domain protein; phosphoesterase DHHA1; SMART: helicase domain protein; DEAD-like helicase YP_003183060.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pag:PLES_39281 putative transcriptional regulator YP_003183062.1 PFAM: TOBE domain protein; KEGG: dar:Daro_1478 molybdenum-pterin binding protein YP_003183063.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bca:BCE_1131 RNA polymerase factor sigma C YP_003183065.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bat:BAS0964 RNA polymerase factor sigma C YP_003183067.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_003183068.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: glo:Glov_0247 LexA DNA-binding domain protein YP_003183069.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: dol:Dole_2569 anaerobic ribonucleoside- triphosphate reductase activating protein YP_003183070.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcb:BCB4264_A2435 putative ABC transporter, permease protein YP_003183071.1 PFAM: regulatory protein TetR; KEGG: bcz:pE33L466_0067 TetR family transcriptional regulator YP_003183072.1 PFAM: phosphofructokinase; KEGG: abo:ABO_1989 6-phosphofructokinase YP_003183073.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: smt:Smal_1160 MATE efflux family protein YP_003183074.1 PFAM: helix-turn-helix HxlR type; KEGG: dvm:DvMF_2974 transcriptional regulator, HxlR family YP_003183075.1 PFAM: nitroreductase; KEGG: ppd:Ppro_1862 nitroreductase YP_003183076.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: vsp:VS_II0121 predicted hydrolase YP_003183077.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: swd:Swoo_4720 XRE family transcriptional regulator YP_003183078.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: vha:VIBHAR_05539 oxidoreductase YP_003183079.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: reh:H16_A1292 ATP-dependent transcriptional regulator,MalT-family YP_003183080.1 KEGG: afw:Anae109_0607 filamentation induced by cAMP protein Fic YP_003183081.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU07370 hypothetical protein YP_003183082.1 PFAM: sodium/hydrogen exchanger; KEGG: bsu:BSU33420 hypothetical protein YP_003183083.1 PFAM: protein of unknown function DUF1648 YP_003183084.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bvi:Bcep1808_4394 GntR family transcriptional regulator YP_003183085.1 KEGG: bcz:BCZK4583 permease YP_003183086.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK4584 ABC transporter, ATP-binding protein YP_003183088.1 KEGG: pcr:Pcryo_2410 hypothetical protein YP_003183089.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: mgm:Mmc1_1580 molybdopterin oxidoreductase YP_003183090.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA5630 molybdenum enzyme, medium subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003183091.1 KEGG: dde:Dde_0463 Crp/FNR family transcriptional regulator YP_003183092.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bcy:Bcer98_3254 EmrB/QacA family drug resistance transporter YP_003183093.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003183094.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: transcriptional regulator, LuxR family YP_003183095.1 PFAM: protein of unknown function DUF1648; KEGG: kpe:KPK_0289 tryptophan/tyrosine permease family protein YP_003183096.1 KEGG: rce:RC1_1908 peptidyl-tRNA hydrolase pth; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003183097.1 KEGG: ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003183098.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003183099.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1058 ferredoxin-type protein, NapH/MauN family YP_003183100.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003183101.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: gur:Gura_0472 cytoplasmic chaperone TorD family protein YP_003183102.1 KEGG: tmz:Tmz1t_0386 polysulphide reductase NrfD YP_003183103.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pmu:PM0723 TtrB YP_003183104.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: ank:AnaeK_1567 molybdopterin oxidoreductase YP_003183106.1 PFAM: RelB antitoxin; KEGG: sew:SeSA_B0017 hypothetical protein YP_003183108.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; 4-diphosphocytidyl- 2C-methyl-D-erythritol synthase; acylneuraminate cytidylyltransferase; KEGG: bha:BH0065 UDP-N-acetylglucosamine pyrophosphorylase YP_003183109.1 TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; KEGG: wsu:WS1251 Na(+)/H(+) antiporter 1 YP_003183110.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: gsu:GSU1886 ribosomal subunit interface protein YP_003183111.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: azo:azo0656 LuxR family transcriptional regulator YP_003183113.1 PFAM: phosphopantetheine-binding; KEGG: abu:Abu_2057 acyl carrier protein, putative YP_003183114.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: spl:Spea_3574 flavocytochrome c YP_003183115.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rpi:Rpic_4005 transcriptional regulator, LuxR family YP_003183116.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: ank:AnaeK_2605 FolC bifunctional protein YP_003183117.1 TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sat:SYN_00606 glutamate synthase (NADPH) YP_003183118.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: pca:Pcar_0753 ferredoxin--NADP(+) reductase subunit alpha YP_003183119.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: gme:Gmet_1189 magnesium/cobalt transporter CorA YP_003183120.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: bps:BPSL2183 putative phage-related DNA polymerase YP_003183121.1 KEGG: dds:Ddes_0171 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_003183122.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pfl:PFL_3213 LuxR family transcriptional regulator YP_003183123.1 TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: sew:SeSA_A1601 anaerobic dimethyl sulfoxide reductase chain A YP_003183124.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ses:SARI_01432 hypothetical protein YP_003183125.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: asu:Asuc_1522 dimethylsulfoxide reductase chain B YP_003183126.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: ypm:YP_0363 anaerobic dimethyl sulfoxide reductase chain C YP_003183127.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: molybdenum cofactor synthesis domain protein YP_003183128.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: gbm:Gbem_1349 molybdenum cofactor synthesis domain protein YP_003183129.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: mlo:mlr0180 ferripyochelin binding protein- like YP_003183130.1 KEGG: glo:Glov_2019 phosphopyruvate hydratase; TIGRFAM: enolase; PFAM: enolase YP_003183131.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: hch:HCH_05087 response regulator YP_003183132.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: slo:Shew_3181 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003183133.1 KEGG: dsh:Dshi_0003 hypothetical protein YP_003183135.1 PFAM: cobalt transport protein; KEGG: bha:BH0166 hypothetical protein YP_003183136.1 PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BSU08400 hypothetical protein YP_003183137.1 KEGG: late embryogenesis abundant domain-containing protein / LEA domain-containing protein YP_003183139.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: dal:Dalk_1888 ribosomal protein L17 YP_003183140.1 KEGG: bsu:BSU01430 DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; SMART: RNA polymerase RpoA/D/Rpb3-type YP_003183141.1 KEGG: gbm:Gbem_0959 ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; SMART: RNA-binding S4 domain protein YP_003183142.1 PFAM: ribosomal protein S11; KEGG: bha:BH0161 30S ribosomal protein S11 YP_003183143.1 PFAM: ribosomal protein S13; KEGG: gme:Gmet_0650 30S ribosomal protein S13 YP_003183144.1 TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: rpmJ; 50S ribosomal protein L36 YP_003183145.1 KEGG: bha:BH0158 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein YP_003183146.1 KEGG: bca:BCE_1606 hypothetical protein YP_003183147.1 KEGG: GK25336 gene product from transcript GK25336- RA YP_003183148.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: plu:plu4288 hypothetical protein YP_003183149.1 PFAM: ApbE family lipoprotein; KEGG: eta:ETA_19250 putative thiamine biosynthesis protein YP_003183150.1 PFAM: UspA domain protein; KEGG: dvl:Dvul_1131 UspA domain-containing protein YP_003183151.1 PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA3906 hypothetical protein YP_003183152.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: plu:plu4288 hypothetical protein YP_003183153.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sbm:Shew185_1157 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003183154.1 KEGG: gsu:GSU2783 HDIG domain-containing protein YP_003183155.1 KEGG: pca:Pcar_1592 hypothetical protein YP_003183156.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: bcb:BCB4264_A0298 chaperonin GroL YP_003183157.1 PFAM: chaperonin Cpn10; KEGG: gme:Gmet_0028 co-chaperonin GroES YP_003183158.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator YP_003183159.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: mmr:Mmar10_2544 putative signal transduction histidine kinase YP_003183160.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: atc:AGR_L_3006 hypothetical protein YP_003183161.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: glo:Glov_1003 fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003183162.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: eca:ECA0910 putative flavoprotein subunit of a reductase YP_003183163.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: shw:Sputw3181_1576 flavocytochrome c YP_003183164.1 KEGG: dac:Daci_4875 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase YP_003183165.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: sat:SYN_00599 Ni2+ insertion GTPase YP_003183166.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: ppd:Ppro_2782 hydrogenase nickel insertion protein HypA YP_003183167.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: sat:SYN_00305 sec-independent protein translocase protein YP_003183168.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pfl:PFL_5995 alginate regulatory protein AlgP YP_003183170.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: hypothetical protein YP_003183171.1 KEGG: bsu:BSU33450 hypothetical protein YP_003183172.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: aci:ACIAD0384 S-adenosylmethionine: 2-DMK methyltransferase and 2-octaprenyl-6-methoxy-1,4- benzoquinone methylase YP_003183176.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcz:BCZK1621 transcriptional regulator YP_003183177.1 PFAM: AAA-4 family protein; KEGG: bmj:BMULJ_05851 hypothetical protein YP_003183178.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: dds:Ddes_1681 two component transcriptional regulator, winged helix family YP_003183179.1 PFAM: Osmosensitive K channel His kinase sensor; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dds:Ddes_1680 osmosensitive K+ channel signal transduction histidine kinase YP_003183180.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex YP_003183181.1 TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dds:Ddes_1678 K+-transporting ATPase, B subunit YP_003183182.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_003183184.1 KEGG: hypothetical protein LOC771357 YP_003183186.1 KEGG: AGAP003983-PA YP_003183187.1 KEGG: GK24882 gene product from transcript GK24882- RA YP_003183188.1 KEGG: surface antigen BspA-like YP_003183189.1 KEGG: glo:Glov_2314 metalloendopeptidase, glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; ribosomal-protein-alanine acetyltransferase; PFAM: peptidase M22 glycoprotease; GCN5-related N- acetyltransferase YP_003183190.1 PFAM: protein of unknown function UPF0079; KEGG: gbm:Gbem_1263 protein of unknown function UPF0079 YP_003183191.1 PFAM: peptidase M24; creatinase; KEGG: jan:Jann_2048 peptidase M24 YP_003183192.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rpc:RPC_4569 formate hydrogenlyase complex iron-sulfur subunit YP_003183193.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E2853 hydrogenase-4 component A YP_003183194.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: yen:YE2810 formate dehydrogenase H YP_003183195.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rru:Rru_A0323 4Fe-4S ferredoxin, iron-sulfur binding YP_003183196.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: mms:mma_0672 methylenetetrahydrofolate dehydrogenase (NADP+) YP_003183197.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: mch:Mchl_2134 formiminotransferase- cyclodeaminase YP_003183199.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: nmc:NMC0378 formate--tetrahydrofolate ligase YP_003183200.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: dol:Dole_3046 Baf family transcriptional activator YP_003183201.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: dds:Ddes_0567 two component transcriptional regulator, winged helix family YP_003183202.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gbm:Gbem_1864 multi-sensor signal transduction histidine kinase YP_003183203.1 KEGG: gbm:Gbem_3468 hypothetical protein YP_003183204.1 PFAM: regulatory protein TetR; KEGG: aav:Aave_2157 transcriptional regulator, TetR family YP_003183205.1 PFAM: DNA polymerase beta domain protein region; KEGG: sun:SUN_0148 hypothetical protein YP_003183206.1 PFAM: protein of unknown function DUF86; KEGG: gme:Gmet_0480 hypothetical protein YP_003183207.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: slo:Shew_2678 electron transfer flavoprotein, alpha subunit YP_003183208.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: spl:Spea_4039 putative electron transfer flavoprotein FixA YP_003183209.1 PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: bph:Bphy_6153 fis family GAF modulated sigma54 specific transcriptional regulator YP_003183210.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; KEGG: sal:Sala_2999 RNA polymerase factor sigma-54 YP_003183211.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rsq:Rsph17025_2585 GCN5-related N- acetyltransferase YP_003183212.1 KEGG: dal:Dalk_2661 wyosine base formation YP_003183213.1 may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain YP_003183214.1 PFAM: AMP-dependent synthetase and ligase; beta- lactamase domain protein; KEGG: rpd:RPD_1133 AMP-dependent synthetase and ligase YP_003183215.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cti:RALTA_B0546 putative enoyl-CoA hydratase/isomerase YP_003183216.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dal:Dalk_4846 NADH:flavin oxidoreductase/NADH oxidase YP_003183217.1 PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_0180 major facilitator transporter YP_003183218.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: eum:ECUMN_0040 crotonobetainyl CoA:carnitine CoA transferase YP_003183219.1 PFAM: major facilitator superfamily MFS_1; KEGG: atc:AGR_L_3235 hypothetical protein YP_003183220.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sdy:SDY_0060 crotonobetainyl-CoA:carnitine CoA-transferase YP_003183221.1 PFAM: peptidase C26; KEGG: rru:Rru_A0651 glutamine amidotransferase class-I YP_003183222.1 KEGG: eba:ebA5455 3-oxoacyl-(acyl carrier protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III YP_003183223.1 PFAM: BioY protein; KEGG: dde:Dde_2954 BioY family protein YP_003183224.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bha:BH2163 hypothetical protein YP_003183225.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: vsp:VS_II1308 putative transcriptional regulator YP_003183226.1 KEGG: shn:Shewana3_1491 tetraheme cytochrome c YP_003183227.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sbm:Shew185_1157 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003183228.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: rce:RC1_1226 biotin-[acetyl-CoA-carboxylase] ligase, BirA YP_003183229.1 TIGRFAM: dihydropteroate synthase; 2-amino-4- hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: dihydropteroate synthase DHPS; 78-dihydro-6- hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: rso:RSc1527 7,8-dihydropteroate synthase protein YP_003183230.1 KEGG: bsu:BSU00690 cell-division protein and general stress protein (class III heat-shock); TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003183231.1 KEGG: bsu:BSU00680 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003183232.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: dal:Dalk_0395 maf protein YP_003183233.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: acp:A2cp1_1062 DNA binding domain protein, excisionase family YP_003183234.1 KEGG: hypothetical protein YP_003183235.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dol:Dole_0068 tRNA(Ile)-lysidine synthetase YP_003183236.1 KEGG: eba:ebA2702 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003183237.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; Protein of unknown function methylase putative; putative RNA methylase; KEGG: bha:BH0687 RNA methyltransferase YP_003183238.1 PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: gme:Gmet_0062 GntR family transcriptional regulator YP_003183239.1 PFAM: amidinotransferase; KEGG: pau:PA14_48840 hypothetical protein YP_003183240.1 PFAM: amino acid permease-associated region; KEGG: bcy:Bcer98_0350 arginine/ornithine antiporter YP_003183241.1 PFAM: membrane protein of unknown function; KEGG: gbm:Gbem_2195 membrane protein of unknown function YP_003183242.1 PFAM: LrgA family protein; KEGG: efe:EFER_2226 conserved hypothetical protein; putative inner membrane protein YP_003183243.1 PFAM: LrgB family protein; KEGG: bha:BH3268 hypothetical protein YP_003183245.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: apj:APJL_1902 NADH-dependent butanol dehydrogenase 1 YP_003183246.1 PFAM: zinc/iron permease; KEGG: dps:DP0096 GufA protein YP_003183247.1 PFAM: Integrase catalytic region; KEGG: apj:APJL_1896 transposase YP_003183248.1 KEGG: apj:APJL_1950 transposase and inactivated derivative YP_003183249.1 PFAM: Ferritin Dps family protein; KEGG: dvm:DvMF_0183 ferroxidase YP_003183250.1 KEGG: bpt:Bpet4906 putative transport protein YP_003183251.1 PFAM: Polysulphide reductase NrfD; KEGG: cco:CCC13826_2318 tRNA uridine 5- carboxymethylaminomethyl modification enzyme GidA YP_003183252.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbp:Sbal223_0560 4Fe-4S ferredoxin iron- sulfur binding domain protein YP_003183253.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: dde:Dde_0682 hypothetical protein YP_003183255.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_1458 hypothetical protein YP_003183256.1 KEGG: cko:CKO_01698 putative oxidoreductase; PFAM: Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase YP_003183257.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: psa:PST_1350 Fe-S cluster assembly protein NifU YP_003183258.1 KEGG: sbc:SbBS512_E1872 hypothetical protein YP_003183259.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: swi:Swit_2523 regulatory protein, LuxR YP_003183260.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aeh:Mlg_0217 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003183261.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: xca:xccb100_0495 hypothetical protein YP_003183262.1 PFAM: Acetamidase/Formamidase; KEGG: bha:BH0025 acetamidase YP_003183263.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: gsu:GSU2670 LuxR family transcriptional regulator YP_003183264.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: eca:ECA0910 putative flavoprotein subunit of a reductase YP_003183265.1 PFAM: sodium:neurotransmitter symporter; KEGG: bha:BH1128 sodium-dependent transporter YP_003183266.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pfo:Pfl01_3423 sensor protein YP_003183267.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: glo:Glov_0943 flavocytochrome c YP_003183269.1 KEGG: glo:Glov_0750 putative anti-sigma regulatory factor, serine/threonine protein kinase YP_003183270.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ppd:Ppro_1526 anti-sigma-factor antagonist YP_003183271.1 PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; KEGG: dps:DP1407 serine/threonine phosphatase family protein YP_003183274.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pha:PSHAb0200 secreted serine protease YP_003183276.1 KEGG: CG31556 YP_003183278.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_0091 ABC transporter related YP_003183279.1 PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mrd:Mrad2831_6118 ABC transporter related YP_003183280.1 KEGG: met:M446_0093 membrane-fusion protein YP_003183282.1 PFAM: protein of unknown function nitrogen fixation YP_003183284.1 PFAM: LytTr DNA-binding region YP_003183288.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pde:Pden_2494 radical SAM domain protein YP_003183290.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: xca:xccb100_1864 putative regulatory protein YP_003183291.1 KEGG: CG18331 YP_003183292.1 KEGG: pcr:Pcryo_2410 hypothetical protein YP_003183295.1 PFAM: regulatory protein TetR; KEGG: bha:BH0719 TetR/AcrR family transcriptional regulator YP_003183296.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: bha:BH0562 chaperonin GroEL YP_003183297.1 PFAM: amidohydrolase 2; KEGG: dds:Ddes_0855 amidohydrolase 2 YP_003183298.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: bcu:BCAH820_0664 CBS domain protein YP_003183299.1 TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; Benzoate membrane transport protein; KEGG: dps:DP1412 xanthine permease YP_003183300.1 TIGRFAM: xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: psp:PSPPH_0081 xanthine phosphoribosyltransferase YP_003183302.1 PFAM: amino acid permease-associated region; KEGG: bcy:Bcer98_1671 arginine/ornithine antiporter YP_003183303.1 PFAM: AMP-dependent synthetase and ligase; Mandelate racemase/muconate lactonizing protein; KEGG: bsu:BSU30780 O-succinylbenzoate-CoA synthase YP_003183304.1 TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bsu:BSU30800 naphthoate synthase YP_003183305.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: tgr:Tgr7_0875 phosphoenolpyruvate carboxylase YP_003183307.1 PFAM: alpha/beta hydrolase fold; KEGG: bsu:BSU30810 hypothetical protein YP_003183308.1 KEGG: bcy:Bcer98_3493 2-succinyl-6-hydroxy-2,4- cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein YP_003183309.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: bcr:BCAH187_A4998 menaquinone-specific isochorismate synthase YP_003183310.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: glo:Glov_0172 large conductance mechanosensitive channel protein YP_003183311.1 TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; KEGG: dal:Dalk_2927 Na+/H+ antiporter NhaA YP_003183312.1 KEGG: bcr:BCAH187_A3629 putative anaerobic ribonucleoside-triphosphate reductase YP_003183313.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcz:pE33L466_0162 transcriptional regulator YP_003183315.1 PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: dps:DP2457 aldolase YP_003183316.1 PFAM: TM2 domain containing protein; KEGG: tdn:Suden_1837 TM2 YP_003183317.1 PFAM: SNARE associated Golgi protein; KEGG: sfu:Sfum_2268 hypothetical protein YP_003183318.1 KEGG: hypothetical protein YP_003183319.1 KEGG: Hypothetical protein CBG04813 YP_003183320.1 PFAM: D-alanine--D-alanine ligase domain protein; KEGG: rfr:Rfer_3423 D-alanine--D-alanine ligase YP_003183322.1 KEGG: similar to novel pim oncogene YP_003183323.1 TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like; KEGG: dal:Dalk_4396 seryl-tRNA synthetase YP_003183324.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: ccs:CCNA_02587 PAS-family sensor histidine kinase YP_003183326.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: cco:CCC13826_1956 phosphomethylpyrimidine kinase YP_003183327.1 PFAM: Acetamidase/Formamidase; KEGG: bcb:BCB4264_A2569 acetamidase/formamidase family protein YP_003183328.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: aba:Acid345_4393 serine/threonine protein kinase with TPR repeats YP_003183329.1 PFAM: protein of unknown function UPF0029; KEGG: mxa:MXAN_2845 conserved hypothetical protein TIGR00257 YP_003183330.1 PFAM: Abortive infection protein; KEGG: bcz:BCZK1250 CAAX amino terminal protease family protein YP_003183331.1 PFAM: TraX family protein; KEGG: pag:PLES_45101 TraX family protein YP_003183332.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcz:BCZK1787 LytR family transcriptional regulator YP_003183333.1 PFAM: domain of unknown function DUF1727; CobB/CobQ domain protein glutamine amidotransferase; Mur ligase middle domain protein; KEGG: gur:Gura_0041 cobyric acid synthase CobQ YP_003183334.1 PFAM: polysaccharide deacetylase; KEGG: bcb:BCB4264_A3726 putative polysaccharide deacetylase YP_003183335.1 PFAM: Citrate transporter; Arsenical pump membrane protein; KEGG: bca:BCE_5050 arsenical pump family protein YP_003183336.1 PFAM: LytTr DNA-binding region; KEGG: aba:Acid345_3487 transcriptional regulator, LytR/AlgR family YP_003183338.1 PFAM: Abortive infection protein; KEGG: xca:xccb100_0005 putative membrane protease YP_003183340.1 PFAM: UspA domain protein; KEGG: rme:Rmet_4395 UspA YP_003183341.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcz:BCZK4752 response regulator YP_003183342.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: bcz:BCZK4751 sensor histidine kinase YP_003183343.1 PFAM: SNARE associated Golgi protein; KEGG: dal:Dalk_0616 SNARE associated Golgi protein YP_003183344.1 TIGRFAM: UV-endonuclease UvdE; PFAM: UV-endonuclease UvdE; KEGG: dds:Ddes_1549 UV-endonuclease UvdE YP_003183345.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_003183346.1 KEGG: cju:C8J_0274 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_003183347.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_003183348.1 KEGG: sat:SYN_02774 putative cytoplasmic protein YP_003183349.1 KEGG: pca:Pcar_2998 hypothetical protein YP_003183350.1 PFAM: Linocin_M18 bacteriocin protein; KEGG: mxa:MXAN_3556 hypothetical protein YP_003183351.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: cjr:CJE1723 MloA protein, putative YP_003183352.1 PFAM: ABC-1 domain protein; KEGG: cvi:CV_2967 ubiquinone biosynthesis protein YP_003183353.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: glo:Glov_0945 succinate dehydrogenase YP_003183354.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pau:PA14_19850 putative transcriptional regulator YP_003183355.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: slo:Shew_1696 hypothetical protein YP_003183357.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bca:BCE_3256 hypothetical protein YP_003183358.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_3079 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003183359.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1058 ferredoxin-type protein, NapH/MauN family YP_003183360.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003183361.1 KEGG: eba:ebA6432 molybdenum enzyme related to thiosulfate reductase and polysulfide reductase, small membrane subunit YP_003183362.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vha:VIBHAR_02586 hypothetical protein YP_003183363.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ank:AnaeK_1567 molybdopterin oxidoreductase YP_003183364.1 KEGG: FAP262; flagellar associated protein YP_003183365.1 KEGG: sfu:Sfum_0502 UvrD/REP helicase YP_003183367.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: ppr:PBPRA1494 chaperone protein TorD YP_003183370.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bbr:BB1406 LuxR family transcriptional regulator YP_003183371.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: ank:AnaeK_2044 FHA domain containing protein YP_003183372.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: mxa:MXAN_3108 FHA domain/tetratricopeptide repeat protein YP_003183373.1 PFAM: Protein phosphatase 2C-like; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: scl:sce2040 phosphoprotein phosphatase YP_003183374.1 PFAM: cell cycle protein; penicillin-binding protein transpeptidase; KEGG: sus:Acid_7521 penicillin-binding protein, transpeptidase YP_003183375.1 PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bsu:BSU15770 protein kinase YP_003183376.1 PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: signal transduction histidine kinase, LytS ; K07704 two-component system, LytT family, sensor histidine kinase LytS YP_003183377.1 PFAM: protein of unknown function DUF81; KEGG: bha:BH1459 hypothetical protein YP_003183379.1 PFAM: protein of unknown function DUF988; KEGG: saz:Sama_0948 multiple antibiotic resistance (MarC)-related protein YP_003183380.1 KEGG: dol:Dole_1440 glycosyl transferase family protein YP_003183381.1 KEGG: rru:Rru_A1284 cytoplasmic chaperone TorD YP_003183382.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eba:ebA5630 molybdenum enzyme, medium subunit,related to phenylacetyl-CoA: acceptor oxidoreductase YP_003183383.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: pmr:PMI0170 anaerobic dimethyl sulfoxide reductase, molybdopterin-binding subunit YP_003183384.1 PFAM: Domain of unknown function DUF1814 YP_003183385.1 KEGG: ade:Adeh_3281 hypothetical protein YP_003183386.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcz:BCZK0245 response regulator YP_003183387.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_2426 Hpt sensor hybrid histidine kinase YP_003183388.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: mxa:MXAN_2273 putative ribosome-associated GTPase YP_003183390.1 PFAM: cation transporter; KEGG: dal:Dalk_0381 potassium uptake protein, TrkH family YP_003183392.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: yen:YE1957 putative purine and pyrimidine permease YP_003183393.1 PFAM: protein of unknown function DUF86; KEGG: ccs:CCNA_03175 cytosolic protein YP_003183394.1 PFAM: DNA polymerase beta domain protein region; KEGG: rce:RC1_2669 nucleotidyltransferase, putative YP_003183395.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sgl:SG1478 hypothetical protein YP_003183396.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bha:BH1884 hydantoinase YP_003183397.1 PFAM: protein of unknown function DUF917; KEGG: bha:BH1883 hypothetical protein YP_003183398.1 PFAM: protein of unknown function DUF1177; KEGG: eta:ETA_25580 hypothetical protein YP_003183399.1 KEGG: mgm:Mmc1_1162 hypothetical protein YP_003183400.1 KEGG: sat:SYN_02525 ClpB protein; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase YP_003183401.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: wsu:WS1254 putative transcriptional regulator YP_003183402.1 PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: chaperone DnaJ domain protein ; K05516 curved DNA-binding protein YP_003183403.1 PFAM: GrpE protein; KEGG: ppd:Ppro_1405 GrpE protein YP_003183404.1 KEGG: gsu:GSU0033 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_003183405.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_4380 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003183406.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: bvi:Bcep1808_5946 hydrogenase expression/formation protein HypE YP_003183407.1 PFAM: NikR nickel binding; KEGG: sus:Acid_6713 CopG family transcriptional regulator YP_003183409.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gme:Gmet_0135 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_003183410.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; KEGG: bsu:BSU38860 UDP-glucose 4-epimerase YP_003183411.1 KEGG: dds:Ddes_2268 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003183412.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bsu:BSU35520 hypothetical protein YP_003183413.1 SMART: helix-turn-helix domain protein; KEGG: pfo:Pfl01_3025 XRE family transcriptional regulator YP_003183414.1 PFAM: VanZ family protein; KEGG: ank:AnaeK_1515 VanZ family protein YP_003183415.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mxa:MXAN_6859 phosphoglycolate phosphatase YP_003183416.1 KEGG: afw:Anae109_1071 hypothetical protein YP_003183417.1 PFAM: Domain of unknown function DUF1814; KEGG: afw:Anae109_1070 hypothetical protein YP_003183418.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hha:Hhal_0379 ABC transporter related YP_003183419.1 PFAM: cobalt transport protein; KEGG: vpa:VPA1483 putative ABC transporter membrane- spanning permease YP_003183420.1 TIGRFAM: conserved hypothetical protein YP_003183421.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rru:Rru_A2339 ABC transporter component YP_003183422.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pap:PSPA7_4420 ABC transporter, permease/ATP- binding protein YP_003183423.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dal:Dalk_2553 MATE efflux family protein YP_003183424.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: tdn:Suden_0219 multi-sensor hybrid histidine kinase YP_003183425.1 PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bpt:Bpet2681 GntR family transcriptional regulator YP_003183427.1 PFAM: major facilitator superfamily MFS_1; KEGG: rpb:RPB_2999 major facilitator transporter YP_003183428.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hne:HNE_1823 E-cinnamoyl-CoA:R-phenyllactate CoA transferase, large subunit YP_003183429.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: ecm:EcSMS35_1501 acyl-CoA dehydrogenase YP_003183430.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_1034 AMP-dependent synthetase and ligase YP_003183431.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gur:Gura_3041 enoyl-CoA hydratase/isomerase YP_003183432.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hne:HNE_1823 E-cinnamoyl-CoA:R-phenyllactate CoA transferase, large subunit YP_003183433.1 PFAM: MaoC domain protein dehydratase; KEGG: vei:Veis_0232 MaoC domain protein dehydratase YP_003183434.1 PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_A1834 MaoC-like dehydratase YP_003183435.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sse:Ssed_3230 putative electron transfer flavoprotein FixA YP_003183436.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: eck:EC55989_0042 putative electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like YP_003183437.1 PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; HI0933 family protein; KEGG: shl:Shal_0217 FAD dependent oxidoreductase YP_003183438.1 KEGG: sse:Ssed_3233 putative ferredoxin YP_003183439.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mxa:MXAN_1760 transcriptional regulator, MarR family YP_003183440.1 KEGG: Hypothetical protein CBG19854 YP_003183441.1 KEGG: proteophosphoglycan 5 YP_003183442.1 KEGG: SNF2 superfamily protein YP_003183443.1 KEGG: bcr:BCAH187_A1709 putative DnaQ family exonuclease/DinG family helicase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; helicase c2 YP_003183445.1 KEGG: sfu:Sfum_4102 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP- grasp; protein of unknown function DUF201; RimK domain protein ATP-grasp; phosphoribosylglycinamide synthetase YP_003183446.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: bcr:BCAH187_A3912 conserved hypothetical protein TIGR00048 YP_003183447.1 KEGG: ParB-like partition protein ; K03497 chromosome partitioning protein, ParB family; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003183448.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bha:BH4058 centromere-like function involved in forespore chromosome partition YP_003183449.1 PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein YP_003183450.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: predicted protein; K03501 glucose inhibited division protein B YP_003183451.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: sfu:Sfum_2598 single-stranded nucleic acid binding R3H domain protein YP_003183452.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: ilo:IL2637 preprotein translocase subunit YidC YP_003183453.1 PFAM: protein of unknown function DUF37; KEGG: ngk:NGK_2660 UPF0161 protein YP_003183454.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: nis:NIS_0879 ribonuclease P protein component