-- dump date 20140619_073605 -- class Genbank::CDS -- table cds_note -- id note YP_003939564.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: ses:SARI_03807 chromosomal replication initiation protein; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase YP_003939565.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: kva:Kvar_0006 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain YP_003939566.1 KEGG: enc:ECL_00003 recombination protein F; TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein YP_003939567.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA gyrase, B subunit; KEGG: cko:CKO_00045 DNA gyrase subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein YP_003939568.1 KEGG: set:SEN3648 sugar phosphatase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003939569.1 KEGG: enc:ECL_00008 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003939570.1 KEGG: enc:ECL_00009 2-keto-3-deoxygalactonate kinase; PFAM: 2-keto-3-deoxy-galactonokinase YP_003939571.1 PFAM: KDPG and KHG aldolase; KEGG: ent:Ent638_0008 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_003939572.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: enc:ECL_00011 galactonate dehydratase YP_003939573.1 KEGG: enc:ECL_00012 D-galactonate transporter; TIGRFAM: d-galactonate transporter; phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1 YP_003939574.1 KEGG: enc:ECL_00013 putative ATP/GTP-binding protein YP_003939575.1 PFAM: protein of unknown function DUF1375; KEGG: enc:ECL_00014 hypothetical protein YP_003939576.1 PFAM: heat shock protein Hsp20; KEGG: kva:Kvar_0014 heat shock protein HSP20 YP_003939577.1 PFAM: heat shock protein Hsp20; KEGG: cko:CKO_00033 heat shock chaperone IbpB YP_003939578.1 KEGG: kpn:KPN_04088 hypothetical protein; TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain-containing protein; TrkA-C domain protein YP_003939579.1 KEGG: cko:CKO_00027 hypothetical protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003939580.1 KEGG: cko:CKO_00026 putative symporter YidK; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_003939581.1 PFAM: sulfatase; KEGG: cko:CKO_00025 hypothetical protein YP_003939582.1 PFAM: protein of unknown function DUF202; KEGG: efe:EFER_3976 conserved hypothetical protein; putative inner membrane protein YP_003939583.1 KEGG: kpu:KP1_5460 hypothetical protein YP_003939584.1 KEGG: cro:ROD_40521 probable arylsulfatase-activating protein; manually curated; PFAM: Radical SAM domain protein YP_003939585.1 TIGRFAM: D-serine ammonia-lyase; KEGG: enc:ECL_00023 D-serine deaminase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003939586.1 KEGG: sed:SeD_A4189 permease DsdX; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter YP_003939587.1 KEGG: cko:CKO_00019 DNA-binding transcriptional regulator DsdC; TIGRFAM: D-serine deaminase transcriptional activator; PFAM: LysR substrate-binding; regulatory protein LysR YP_003939588.1 KEGG: kva:Kvar_0026 multidrug/H+ antiporter, major facilitator superfamily (MFS); TIGRFAM: multidrug/H+ antiporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1 YP_003939589.1 PFAM: Protein of unknown function DUF2136; KEGG: sbo:SBO_2944 hypothetical protein YP_003939590.1 KEGG: epy:EpC_pEp360190 conserved uncharacterized protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003939591.1 KEGG: enc:ECL_00034 acetolactate synthase catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein YP_003939592.1 PFAM: amino acid-binding ACT domain protein; KEGG: enc:ECL_00035 acetolactate synthase 1 regulatory subunit YP_003939593.1 KEGG: set:SEN3610 putative DeoR-family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003939594.1 KEGG: set:SEN3609 putative carbohydrate kinase; TIGRFAM: ribokinase; PFAM: PfkB domain protein YP_003939595.1 KEGG: spq:SPAB_04713 hypothetical protein; TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1 YP_003939596.1 KEGG: sea:SeAg_B4017 DeoX YP_003939597.1 KEGG: enc:ECL_00036 DNA-binding transcriptional activator UhpA; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003939598.1 KEGG: enc:ECL_00037 sensory histidine kinase UhpB; PFAM: MASE1 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003939599.1 KEGG: ent:Ent638_0029 regulatory protein UhpC; TIGRFAM: phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1 YP_003939600.1 KEGG: enc:ECL_00039 sugar phosphate antiporter; TIGRFAM: phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1 YP_003939601.1 PFAM: protein of unknown function DUF1198; KEGG: enc:ECL_00042 hypothetical protein YP_003939602.1 KEGG: set:SEN3600 putative DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003939603.1 PFAM: major facilitator superfamily MFS_1; KEGG: kva:Kvar_0041 major facilitator superfamily MFS_1 YP_003939604.1 TIGRFAM: phosphonoacetaldehyde hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: kpu:KP1_5437 phosphonoacetaldehyde hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003939605.1 KEGG: kpn:KPN_04063 2-aminoethylphosphonate--pyruvate transaminase; TIGRFAM: 2-aminoethylphosphonate/pyruvate transaminase; 2-aminoethylphosphonate aminotransferase; PFAM: aminotransferase class V YP_003939606.1 TIGRFAM: transcriptional regulator protein; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; KEGG: kpu:KP1_5434 2-aminoethylphosphonate transporter repressor; SMART: regulatory protein GntR HTH YP_003939607.1 KEGG: kpu:KP1_5432 2-aminoethylphosphonate transport system periplasmic binding component; TIGRFAM: 2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein; PFAM: extracellular solute-binding protein family 1 YP_003939608.1 TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; KEGG: kpu:KP1_5431 2-aminoethylphosphonate transporter ATP-binding component; SMART: AAA ATPase YP_003939609.1 KEGG: kpn:KPN_04059 2-aminoethylphosphonate transporter, membrane component; TIGRFAM: 2-aminoethylphosphonate ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component YP_003939610.1 KEGG: sek:SSPA2139 probable membrane component of 2-aminoethylphosphonate transporter; TIGRFAM: 2-aminoethylphosphonate ABC transport system, membrane component PhnV; PFAM: binding-protein-dependent transport systems inner membrane component YP_003939611.1 KEGG: kva:Kvar_0054 putative secreted protein YP_003939612.1 KEGG: eum:ECUMN_4178 conserved hypothetical protein; putative inner membrane protein; TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane YP_003939613.1 KEGG: kva:Kvar_0056 phosphotransferase system EIIC; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003939614.1 TIGRFAM: glucokinase regulatory-like protein; KEGG: kva:Kvar_0057 glucokinase regulatory-like protein YP_003939615.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ent:Ent638_0041 GCN5-related N-acetyltransferase YP_003939616.1 PFAM: regulatory protein TetR; KEGG: kpu:KP1_5402 putative TetR-family trancriptional regulatory protein YP_003939617.1 KEGG: ent:Ent638_0043 EmrB/QacA family drug resistance transporter; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1 YP_003939618.1 KEGG: kva:Kvar_0070 uncharacterized peroxidase-related enzyme; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase YP_003939619.1 KEGG: kpu:KP1_5395 putative AraC-type regulatory protein; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003939620.1 KEGG: cko:CKO_05126 cytoplasmic membrane lipoprotein-28; TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein YP_003939621.1 KEGG: dar:Daro_2297 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003939622.1 KEGG: bur:Bcep18194_A5019 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003939623.1 PFAM: protein of unknown function DUF347; KEGG: fal:FRAAL3161 putative integral membrane protein YP_003939624.1 KEGG: ddc:Dd586_3189 cytochrome b561 YP_003939625.1 KEGG: kpu:KP1_2888 putative cation efflux system; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_003939626.1 KEGG: xac:XAC4351 hypothetical protein YP_003939627.1 KEGG: xac:XAC4351 hypothetical protein YP_003939628.1 PFAM: DoxX family protein; KEGG: pay:PAU_00873 hypothetical protein YP_003939629.1 PFAM: Protein of unknown function DUF2063; KEGG: pay:PAU_00872 hypothetical protein YP_003939630.1 PFAM: protein of unknown function DUF692; KEGG: pay:PAU_00871 hypothetical protein YP_003939631.1 KEGG: pay:PAU_00870 hypothetical protein YP_003939632.1 KEGG: pay:PAU_00869 hypothetical protein YP_003939633.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eum:ECUMN_0355 putative DNA-binding transcriptional regulator YP_003939634.1 PFAM: Ankyrin; KEGG: ent:Ent638_3145 ankyrin YP_003939635.1 KEGG: eoh:ECO103_0297 hypothetical protein YP_003939636.1 KEGG: enc:ECL_04001 FdrA family protein YP_003939637.1 PFAM: protein of unknown function DUF1116; KEGG: enc:ECL_04000 hypothetical protein YP_003939638.1 KEGG: eok:G2583_0428 carbamate kinase family protein; PFAM: aspartate/glutamate/uridylate kinase YP_003939639.1 PFAM: sulphate transporter; KEGG: mms:mma_1118 hypothetical protein YP_003939640.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bbe:BBR47_45080 hypothetical protein YP_003939641.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pam:PANA_2401 CodB YP_003939642.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: ent:Ent638_0070 putative transporter YP_003939643.1 PFAM: glycoside hydrolase family 31; KEGG: ses:SARI_03890 alpha-xylosidase YicI YP_003939644.1 PFAM: AsmA family protein; KEGG: enc:ECL_00105 hypothetical protein YP_003939645.1 KEGG: cko:CKO_05111 hypothetical protein; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_003939646.1 KEGG: cro:ROD_41631 sodium/glutamate symport carrier protein (glutamate permease); TIGRFAM: sodium/glutamate symporter; PFAM: sodium/glutamate symporter YP_003939647.1 KEGG: sea:SeAg_B4332 glycerol kinase; TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like YP_003939648.1 KEGG: enc:ECL_05050 MIP family channel protein; TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein YP_003939649.1 PFAM: protein of unknown function DUF904; KEGG: enc:ECL_05049 hypothetical protein YP_003939650.1 KEGG: enc:ECL_05060 putative sulfur-binding protein; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_003939651.1 KEGG: ses:SARI_03577 hypothetical protein; TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter YP_003939652.1 TIGRFAM: CDP-diacylglycerol pyrophosphatase; KEGG: kpu:KP1_5364 CDP-diacylglycerol pyrophosphatase; PFAM: CDP-diacylglycerol pyrophosphatase YP_003939653.1 PFAM: Citrate transporter; KEGG: cko:CKO_03080 hypothetical protein YP_003939654.1 TIGRFAM: triosephosphate isomerase; KEGG: enc:ECL_05057 triosephosphate isomerase; PFAM: triosephosphate isomerase YP_003939655.1 PFAM: protein of unknown function DUF1454; KEGG: kva:Kvar_0097 protein of unknown function DUF1454 YP_003939656.1 PFAM: protein of unknown function DUF805; KEGG: kva:Kvar_0098 protein of unknown function DUF805 YP_003939657.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: kpn:KPN_04002 ferredoxin-NADP reductase YP_003939658.1 TIGRFAM: fructose-1,6-bisphosphatase, class II; KEGG: cko:CKO_03075 fructose 1,6-bisphosphatase II; PFAM: GlpX family protein YP_003939659.1 TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; KEGG: ecy:ECSE_3934 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase ; helicase domain protein YP_003939660.1 KEGG: eck:EC55989_4117 tRNA guanosine-2'-O-methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU) YP_003939661.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: cko:CKO_05107 bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein YP_003939662.1 KEGG: cko:CKO_05106 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6 YP_003939663.1 SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: ses:SARI_03899 guanylate kinase; PFAM: guanylate kinase YP_003939664.1 PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; KEGG: enc:ECL_00115 NAD-dependent DNA ligase; SMART: NAD-dependent DNA ligase YP_003939665.1 PFAM: Uncharacterised protein family UPF0126; KEGG: enc:ECL_00116 hypothetical protein YP_003939666.1 PFAM: YicC-like domain-containing protein; domain of unknown function DUF1732; KEGG: kva:Kvar_0111 YicC domain protein YP_003939667.1 TIGRFAM: ribonuclease PH; KEGG: enc:ECL_00118 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 YP_003939668.1 TIGRFAM: orotate phosphoribosyltransferase; KEGG: cro:ROD_41731 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003939669.1 PFAM: regulatory protein TetR; KEGG: cko:CKO_05098 nucleoid occlusion protein YP_003939670.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: enc:ECL_00121 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase YP_003939671.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: kpu:KP1_5331 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein YP_003939672.1 KEGG: kpe:KPK_0116 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC YP_003939673.1 KEGG: kva:Kvar_0123 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28 YP_003939674.1 KEGG: ctu:Ctu_41410 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33 YP_003939675.1 TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: kpu:KP1_5327 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding YP_003939676.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: enc:ECL_00127 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase YP_003939677.1 PFAM: glycosyl transferase family 2; KEGG: ent:Ent638_0106 glycosyl transferase family protein YP_003939678.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; glycosyl transferase group 1; KEGG: kpu:KP1_5324 3-deoxy-D-manno-octulosonic-acid transferase YP_003939679.1 PFAM: glycosyl transferase family 2; KEGG: ent:Ent638_0110 putative glycosyl transferase YP_003939680.1 PFAM: glycosyl transferase group 1; KEGG: ent:Ent638_0112 glycosyl transferase, group 1 YP_003939681.1 PFAM: glycosyl transferase group 1; KEGG: ent:Ent638_0113 glycosyl transferase, group 1 YP_003939682.1 KEGG: ent:Ent638_0114 lipopolysaccharide heptosyltransferase III, putative; TIGRFAM: lipopolysaccharide heptosyltransferase III; PFAM: glycosyl transferase family 9 YP_003939683.1 KEGG: ent:Ent638_0115 ADP-heptose:LPS heptosyl transferase I; TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9 YP_003939684.1 KEGG: enc:ECL_00139 ADP-heptose:LPS heptosyltransferase II; TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9 YP_003939685.1 KEGG: enc:ECL_00140 ADP-L-glycero-D-mannoheptose-6-epimerase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_003939686.1 TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; KEGG: enc:ECL_00141 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II YP_003939687.1 KEGG: set:SEN3530 L-threonine 3-dehydrogenase; TIGRFAM: L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein YP_003939688.1 PFAM: O-antigen polymerase; KEGG: ctu:Ctu_41260 hypothetical protein YP_003939689.1 PFAM: glycosyl transferase family 2; KEGG: ctu:Ctu_41250 hypothetical protein YP_003939690.1 KEGG: ctu:Ctu_41240 hypothetical protein YP_003939691.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: esa:ESA_04113 hypothetical protein YP_003939692.1 PFAM: Peptidase M23; KEGG: ent:Ent638_0122 hypothetical protein YP_003939693.1 TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: ent:Ent638_0123 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein YP_003939694.1 KEGG: sbc:SbBS512_E4039 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003939695.1 KEGG: enc:ECL_00154 hypothetical protein; TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin YP_003939696.1 KEGG: enc:ECL_00155 preprotein translocase subunit SecB; TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB YP_003939697.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: cro:ROD_42081 glycerol-3-phosphate dehydrogenase YP_003939698.1 TIGRFAM: serine O-acetyltransferase; KEGG: enc:ECL_00157 serine acetyltransferase YP_003939699.1 KEGG: ent:Ent638_0129 putative tRNA/rRNA methyltransferase YibK; TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU) YP_003939700.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: efe:EFER_3599 L-lactate dehydrogenase YP_003939701.1 KEGG: kpe:KPK_0147 DNA-binding transcriptional repressor LldR; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003939702.1 KEGG: ent:Ent638_0132 L-lactate permease; TIGRFAM: L-lactate transport; PFAM: L-lactate permease YP_003939703.1 KEGG: kva:Kvar_0155 hypothetical protein YP_003939704.1 KEGG: kva:Kvar_0156 hypothetical protein YP_003939705.1 PFAM: Mannitol repressor; KEGG: ses:SARI_03953 mannitol repressor protein YP_003939706.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: enc:ECL_00169 mannitol-1-phosphate 5-dehydrogenase YP_003939707.1 KEGG: ses:SARI_03955 hypothetical protein; TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit YP_003939708.1 KEGG: cko:CKO_05052 hypothetical protein YP_003939709.1 PFAM: secretion protein HlyD family protein; KEGG: enc:ECL_00173 secretion protein HlyD family protein YP_003939710.1 PFAM: Glutathione S-transferase domain; KEGG: cko:CKO_05048 putative glutathione S-transferase YP_003939711.1 TIGRFAM: L-seryl-tRNA selenium transferase; KEGG: sbc:SbBS512_E4006 selenocysteine synthase; PFAM: Pyridoxal phosphate-dependent transferase YP_003939712.1 KEGG: kpe:KPK_0158 selenocysteinyl-tRNA-specific translation factor; TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3 YP_003939713.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: enc:ECL_00178 LysR family transcriptional regulator YP_003939714.1 KEGG: enc:ECL_00096 hypothetical protein YP_003939715.1 PFAM: transcriptional regulator domain-containing protein; KEGG: efe:EFER_2778 putative regulatory protein YP_003939716.1 KEGG: cro:ROD_42351 hypothetical protein YP_003939717.1 KEGG: pam:PANA_4009 Tar; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003939718.1 KEGG: enc:ECL_00184 hypothetical protein; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein YP_003939719.1 TIGRFAM: hexulose-6-phosphate isomerase; KEGG: enc:ECL_00185 putative hexulose-6-phosphate isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel YP_003939720.1 PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sek:SSPA3292 3-keto-L-gulonate-6-phosphate decarboxylase YP_003939721.1 PFAM: Carbohydrate kinase, FGGY-like; KEGG: cko:CKO_05037 hypothetical protein YP_003939722.1 PFAM: major facilitator superfamily MFS_1; KEGG: enc:ECL_00188 major facilitator family transporter YP_003939723.1 KEGG: cko:CKO_05035 hypothetical protein YP_003939724.1 PFAM: Conserved hypothetical protein CHP00022; KEGG: cko:CKO_05034 hypothetical protein YP_003939725.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: cko:CKO_05033 2,3-diketo-L-gulonate reductase YP_003939726.1 KEGG: spe:Spro_3932 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region-containing protein YP_003939727.1 KEGG: pwa:Pecwa_3887 hypothetical protein YP_003939728.1 PFAM: inner-membrane translocator; KEGG: spe:Spro_3930 monosaccharide-transporting ATPase YP_003939729.1 KEGG: spe:Spro_3929 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003939730.1 KEGG: cko:CKO_05032 hypothetical protein; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR YP_003939731.1 PFAM: aminotransferase class I and II; KEGG: enc:ECL_00194 valine--pyruvate transaminase YP_003939732.1 KEGG: enc:ECL_00195 periplasmic alpha-amylase precursor; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003939733.1 manually curated; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; KEGG: efe:EFER_3568 hypothetical protein; SMART: Lysozyme subfamily 2 YP_003939734.1 PFAM: transposase IS4 family protein; KEGG: pct:PC1_1038 transposase IS4 family protein YP_003939735.1 KEGG: kpu:KP1_5281 putative regulator of xyl operon; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003939736.1 PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E3954 D-xylose ABC transporter, permease protein YP_003939737.1 TIGRFAM: D-xylose ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: enc:ECL_00199 xylose transporter ATP-binding subunit; SMART: AAA ATPase YP_003939738.1 KEGG: kva:Kvar_0173 D-xylose ABC transporter, periplasmic substrate-binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator YP_003939739.1 TIGRFAM: xylose isomerase; KEGG: enc:ECL_00201 xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel YP_003939740.1 KEGG: cro:ROD_42421 xylulose kinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like YP_003939741.1 KEGG: cro:ROD_42682 small toxic polypeptide LdrD YP_003939742.1 PFAM: acyltransferase 3; KEGG: ecm:EcSMS35_3884 acyltransferase family protein YP_003939743.1 KEGG: efe:EFER_3562 hypothetical protein YP_003939744.1 TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: cro:ROD_42461 glycine-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit YP_003939745.1 TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: enc:ECL_00208 glycyl-tRNA synthetase subunit beta YP_003939746.1 KEGG: enc:ECL_00209 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003939747.1 KEGG: sdy:SDY_4348 putative transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003939748.1 KEGG: kva:Kvar_0187 putative lipoprotein YP_003939749.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: kpu:KP1_5261 2-hydroxyacid dehydrogenase YP_003939750.1 PFAM: major facilitator superfamily MFS_1; KEGG: kpu:KP1_5260 general substrate transporter YP_003939751.1 PFAM: PfkB domain protein; KEGG: enc:ECL_00216 ribokinase-like domain-containing protein YP_003939752.1 PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: enc:ECL_00218 xylose isomerase domain-containing protein YP_003939753.1 KEGG: ent:Ent638_0171 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003939754.1 PFAM: OmpA/MotB domain protein; KEGG: kva:Kvar_0193 OmpA/MotB domain protein YP_003939755.1 TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; KEGG: kpu:KP1_5254 biotin sulfoxide reductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_003939756.1 PFAM: GCN5-related N-acetyltransferase; KEGG: set:SEN3466 hypothetical protein YP_003939757.1 TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: enc:ECL_00224 3-methyl-adenine DNA glycosylase I; PFAM: methyladenine glycosylase YP_003939758.1 KEGG: ent:Ent638_0176 putative lipase YP_003939759.1 KEGG: cko:CKO_04997 hypothetical protein; TIGRFAM: Oxalate/Formate Antiporter; PFAM: major facilitator superfamily MFS_1 YP_003939760.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: kva:Kvar_0199 sulfatase YP_003939762.1 PFAM: extracellular solute-binding protein family 5; KEGG: kva:Kvar_0201 extracellular solute-binding protein family 5 YP_003939763.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: esa:ESA_04194 dipeptide transporter permease DppB YP_003939764.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S4193 dipeptide transporter YP_003939765.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: ses:SARI_04005 dipeptide transporter ATP-binding subunit; SMART: AAA ATPase YP_003939766.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: ent:Ent638_0188 dipeptide transporter ATP-binding subunit; SMART: AAA ATPase YP_003939767.1 TIGRFAM: cellulose synthase operon protein YhjU; KEGG: enc:ECL_04944 hypothetical protein YP_003939768.1 TIGRFAM: celllulose biosynthesis operon protein BcsF/YhjT; KEGG: kva:Kvar_0214 celllulose biosynthesis operon protein BcsF/YhjT YP_003939769.1 KEGG: efe:EFER_3521 putative cellulose biosynthesis protease; manually curated; TIGRFAM: cellulose biosynthesis protein BcsE YP_003939770.1 KEGG: cro:ROD_42721 hypothetical protein YP_003939771.1 KEGG: ent:Ent638_3931 cell division protein; TIGRFAM: cellulose synthase operon protein YhjQ; PFAM: Cellulose synthase operon protein YhjQ YP_003939772.1 KEGG: kpu:KP1_5225 cellulose synthase catalytic subunit; TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ YP_003939773.1 KEGG: ses:SARI_04016 cellulose synthase regulator protein; manually curated; PFAM: Cellulose synthase BcsB YP_003939774.1 KEGG: cro:ROD_42761 endo-1,4-beta-glucanase (cellulase); PFAM: glycoside hydrolase family 8 YP_003939775.1 KEGG: cko:CKO_04973 cellulose synthase subunit BcsC; PFAM: cellulose synthase operon C domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat YP_003939776.1 SMART: EAL domain protein; GGDEF domain containing protein; manually curated; TIGRFAM: diguanylate cyclase; KEGG: kva:Kvar_0222 diguanylate cyclase/phosphodiesterase with extracellular sensor; PFAM: EAL domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein YP_003939777.1 PFAM: sodium:dicarboxylate symporter; KEGG: kva:Kvar_0223 sodium:dicarboxylate symporter YP_003939778.1 PFAM: peptidase M16 domain protein; KEGG: kpu:KP1_5218 putative peptidase YP_003939779.1 KEGG: enc:ECL_04930 2-keto-3-deoxygluconate kinase; manually curated; PFAM: PfkB domain protein YP_003939780.1 KEGG: sea:SeAg_B3818 EAL domain-containing protein; PFAM: EAL domain protein; SMART: EAL domain protein YP_003939781.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); KEGG: cro:ROD_42841 major facilitator superfamily protein YP_003939782.1 KEGG: cko:CKO_04962 hypothetical protein; TIGRFAM: ribonuclease; PFAM: ribonuclease BN YP_003939783.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cko:CKO_04961 hypothetical protein YP_003939784.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kva:Kvar_0230 short-chain dehydrogenase/reductase SDR YP_003939785.1 KEGG: enc:ECL_04919 putative inner membrane protein YP_003939786.1 PFAM: beta-lactamase; KEGG: ent:Ent638_4058 beta-lactamase YP_003939787.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: eok:G2583_1265 putative chaperone protein YP_003939788.1 KEGG: eta:ETA_28550 putative adhesin MrkD (involved in the expression of type III fimbriae) YP_003939789.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: eok:G2583_1267 putative outer membrane usher protein YP_003939790.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: eok:G2583_1268 gram-negative pili assembly chaperone YP_003939791.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eok:G2583_1269 fimbrial protein YP_003939792.1 KEGG: enc:ECL_01043 hypothetical protein YP_003939793.1 KEGG: kva:Kvar_0781 hypothetical protein YP_003939794.1 KEGG: kpn:KPN_03866 glutathione reductase; TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003939795.1 PFAM: protein of unknown function DUF519; KEGG: ent:Ent638_3912 hypothetical protein YP_003939796.1 KEGG: kva:Kvar_0237 phosphoesterase PA-phosphatase related protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_003939797.1 KEGG: cko:CKO_04954 oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F YP_003939798.1 PFAM: protein of unknown function DUF548; KEGG: kpu:KP1_5202 putative methyltransferase YP_003939799.1 KEGG: set:SEN3415 inner membrane transporter YhiP; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region YP_003939800.1 PFAM: UspA domain-containing protein; KEGG: ent:Ent638_3909 UspA domain-containing protein YP_003939801.1 PFAM: Universal stress protein B; KEGG: kva:Kvar_0242 universal stress protein B YP_003939802.1 PFAM: phosphate transporter; KEGG: cko:CKO_04941 hypothetical protein YP_003939803.1 PFAM: HI0933 family protein; KEGG: enc:ECL_04910 hypothetical protein YP_003939804.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: ebi:EbC_22090 L-2,4-diaminobutyrate decarboxylase YP_003939805.1 KEGG: pct:PC1_2060 diaminobutyrate--2-oxoglutarate aminotransferase; TIGRFAM: 2,4-diaminobutyrate 4-transaminase; PFAM: aminotransferase class-III YP_003939806.1 TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; KEGG: ssn:SSON_4202 aspartate kinase III; PFAM: aspartate/glutamate/uridylate kinase YP_003939807.1 KEGG: eic:NT01EI_2984 hypothetical protein YP_003939808.1 PFAM: MgtE integral membrane region; CBS domain containing protein; KEGG: kva:Kvar_0245 MgtE integral membrane region YP_003939809.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: kva:Kvar_0254 DegT/DnrJ/EryC1/StrS aminotransferase YP_003939810.1 PFAM: glycosyl transferase family 2; KEGG: kpn:KPN_03846 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_003939811.1 PFAM: NAD-dependent epimerase/dehydratase; formyl transferase domain protein; KEGG: kva:Kvar_0256 NAD-dependent epimerase/dehydratase YP_003939812.1 PFAM: polysaccharide deacetylase; KEGG: kpu:KP1_5181 hypothetical protein YP_003939813.1 PFAM: glycosyl transferase family 39; KEGG: kpu:KP1_5180 4-amino-4-deoxy-L-arabinose transferase YP_003939814.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: enc:ECL_04858 hypothetical protein YP_003939815.1 KEGG: kpu:KP1_5178 hypothetical protein YP_003939816.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: efe:EFER_3467 holo-(acyl carrier protein) synthase 2 YP_003939817.1 PFAM: Beta-ketoacyl synthase; KEGG: cro:ROD_43251 putative beta-ketoacyl synthase YP_003939818.1 KEGG: etr:ETAE_0824 3-ketoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR YP_003939819.1 KEGG: cko:CKO_04922 hypothetical protein YP_003939820.1 PFAM: Beta-ketoacyl synthase; KEGG: cro:ROD_43281 putative beta-ketoacyl synthase YP_003939821.1 KEGG: etr:ETAE_0827 hypothetical protein YP_003939822.1 KEGG: cro:ROD_43301 hypothetical protein YP_003939823.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: etr:ETAE_0829 putative outer-membrane lipoprotein carrier protein YP_003939824.1 PFAM: thioesterase superfamily protein; KEGG: enc:ECL_04848 thioesterase superfamily protein YP_003939825.1 PFAM: glycosyl transferase family 2; KEGG: cro:ROD_43331 putative glycosyl transferase YP_003939826.1 KEGG: cro:ROD_43341 putative acyl carrier protein dehydratase YP_003939827.1 PFAM: AMP-dependent synthetase and ligase; KEGG: etr:ETAE_0833 hypothetical protein YP_003939828.1 KEGG: pam:PANA_0553 hypothetical protein YP_003939829.1 PFAM: phosphopantetheine-binding; KEGG: efe:EFER_3454 acyl carrier protein YP_003939830.1 PFAM: phosphopantetheine-binding; KEGG: ent:Ent638_3886 putative acyl carrier protein YP_003939831.1 KEGG: pam:PANA_0550 hypothetical protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003939832.1 KEGG: ent:Ent638_3884 hypothetical protein YP_003939833.1 KEGG: ent:Ent638_3882 hypothetical protein YP_003939834.1 KEGG: enc:ECL_04837 hypothetical protein YP_003939835.1 KEGG: kpu:KP1_5174 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165 YP_003939836.1 PFAM: SirA-like domain-containing protein; KEGG: enc:ECL_04835 hypothetical protein YP_003939837.1 KEGG: kpe:KPK_0278 zinc/cadmium/mercury/lead-transporting ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase YP_003939838.1 PFAM: YhhN family protein; KEGG: enc:ECL_04830 YhhN family protein YP_003939839.1 PFAM: Protein of unknown function DUF2500; KEGG: kva:Kvar_0268 protein of unknown function DUF2500 YP_003939840.1 PFAM: protein of unknown function DUF1145; KEGG: kva:Kvar_0269 protein of unknown function DUF1145 YP_003939841.1 TIGRFAM: methyltransferase; KEGG: ses:SARI_04064 16S rRNA m(2)G966-methyltransferase; PFAM: Conserved hypothetical protein CHP00095 YP_003939842.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: cro:ROD_43571 cell division protein; SMART: AAA ATPase YP_003939843.1 TIGRFAM: Type II (General) Secretory Pathway (IISP) Family protein; cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: ent:Ent638_3867 cell division protein FtsE; SMART: AAA ATPase YP_003939844.1 KEGG: kpn:KPN_03828 cell division protein FtsX; TIGRFAM: protein insertion ABC transporter, inner membrane subunit FtsX; PFAM: protein of unknown function DUF214 YP_003939845.1 KEGG: ctu:Ctu_39700 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein YP_003939846.1 KEGG: spe:Spro_4307 transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH YP_003939847.1 KEGG: ent:Ent638_3864 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III YP_003939848.1 PFAM: Extracellular ligand-binding receptor; KEGG: ecq:ECED1_4133 leucine/isoleucine/valine transporter subunit ; periplasmic-binding component of ABC superfamily YP_003939849.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sek:SSPA3188a hypothetical protein YP_003939850.1 PFAM: Extracellular ligand-binding receptor; KEGG: enc:ECL_04816 branched-chain amino acid transport system substrate-binding protein YP_003939851.1 PFAM: inner-membrane translocator; KEGG: cro:ROD_43691 high-affinity branched-chain amino acid ABC transporter, permease protein YP_003939852.1 PFAM: inner-membrane translocator; KEGG: kva:Kvar_0282 inner-membrane translocator YP_003939853.1 KEGG: sbc:SbBS512_E3867 leucine/isoleucine/valine transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003939854.1 KEGG: enc:ECL_04812 branched-chain amino acid transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003939855.1 PFAM: extracellular solute-binding protein family 1; KEGG: enc:ECL_04811 glycerol-3-phosphate transporter periplasmic binding protein YP_003939856.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: enc:ECL_04810 glycerol-3-phosphate transporter permease protein YP_003939857.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpn:KPN_03811 glycerol-3-phosphate transporter membrane protein YP_003939858.1 KEGG: enc:ECL_04808 glycerol-3-phosphate transporter ATP-binding subunit; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase YP_003939859.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: eum:ECUMN_3911 cytoplasmic glycerophosphodiester phosphodiesterase YP_003939860.1 KEGG: cko:CKO_04869 hypothetical protein YP_003939861.1 KEGG: enc:ECL_04805 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_003939862.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ent:Ent638_3849 GCN5-related N-acetyltransferase YP_003939863.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sed:SeD_A3914 putative dehydrogenase YP_003939864.1 PFAM: Pirin domain protein; KEGG: sea:SeAg_B3744 protein YhhW YP_003939865.1 KEGG: set:SEN3366 gluconate utilization operon repressor; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003939866.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: ecf:ECH74115_4753 gluconate kinase 1; PFAM: shikimate kinase YP_003939867.1 KEGG: kpu:KP1_5134 low affinity gluconate transporter; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter YP_003939868.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: cko:CKO_04854 putative dITP- and XTP- hydrolase YP_003939869.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: kpe:KPK_0315 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding YP_003939870.1 TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; KEGG: cko:CKO_04851 glycogen branching enzyme; SMART: alpha amylase catalytic sub domain YP_003939871.1 TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: kva:Kvar_0303 glycogen debranching enzyme GlgX; SMART: alpha amylase catalytic sub domain YP_003939872.1 KEGG: kva:Kvar_0304 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase YP_003939873.1 KEGG: cko:CKO_04848 glycogen synthase; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain-containing protein; glycosyl transferase group 1 YP_003939874.1 TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; KEGG: efe:EFER_3405 glycogen phosphorylase; PFAM: glycosyl transferase family 35 YP_003939875.1 KEGG: enc:ECL_04789 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase YP_003939876.1 PFAM: Rhodanese domain protein; KEGG: kva:Kvar_0310 thiosulfate sulfurtransferase; SMART: Rhodanese domain protein YP_003939877.1 KEGG: cko:CKO_04842 intramembrane serine protease GlpG; PFAM: Rhomboid family protein YP_003939878.1 KEGG: kpu:KP1_5123 DNA-binding transcriptional repressor GlpR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003939879.1 KEGG: kpu:KP1_5122 transcriptional regulator MalT; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003939880.1 KEGG: efe:EFER_3386 maltodextrin phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003939881.1 TIGRFAM: 4-alpha-glucanotransferase; KEGG: cko:CKO_04837 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_003939882.1 KEGG: ses:SARI_04102 hypothetical protein; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter YP_003939883.1 KEGG: enc:ECL_04778 putative DNA uptake protein; TIGRFAM: IscR-regulated protein YhgI; PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein YP_003939884.1 PFAM: phosphoribosyltransferase; KEGG: ses:SARI_04105 gluconate periplasmic binding protein YP_003939885.1 KEGG: ctu:Ctu_39220 carboxylesterase BioH; TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold YP_003939886.1 PFAM: protein of unknown function DUF1471; KEGG: kva:Kvar_0320 protein of unknown function DUF1471 YP_003939887.1 PFAM: protein of unknown function DUF1920; KEGG: ent:Ent638_3823 putative cytoplasmic protein YP_003939888.1 KEGG: kpe:KPK_0336 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B domain-containing protein; GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein YP_003939889.1 PFAM: FeoA family protein; KEGG: kva:Kvar_0323 FeoA family protein YP_003939890.1 KEGG: kpn:KPN_03777 hypothetical protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold YP_003939891.1 KEGG: ctu:Ctu_39150 transcription elongation factor GreB; TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain-containing protein YP_003939892.1 KEGG: pam:PANA_3682 OmpR; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003939893.1 KEGG: cro:ROD_44201 two-component sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003939894.1 KEGG: enc:ECL_04766 phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); PFAM: phosphoenolpyruvate carboxykinase (ATP) YP_003939895.1 PFAM: Hsp33 protein; KEGG: kpu:KP1_5103 HSP33-like chaperonin YP_003939896.1 KEGG: sdy:SDY_3678 ribosome-associated heat shock protein HSP15; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003939897.1 KEGG: sei:SPC_3565 putative hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003939898.1 PFAM: Intracellular growth attenuator IgaA; KEGG: kpn:KPN_03769 putative dehydrogenase YP_003939899.1 PFAM: NUDIX hydrolase; KEGG: eok:G2583_4093 ADP compounds hydrolase NudE YP_003939900.1 TIGRFAM: penicillin-binding protein, 1A family; KEGG: ent:Ent638_3809 peptidoglycan synthetase; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_003939901.1 KEGG: kpu:KP1_5096 hypothetical protein YP_003939902.1 PFAM: Fimbrial assembly family protein; KEGG: kpu:KP1_5095 hypothetical protein YP_003939903.1 KEGG: kpn:KPN_03764 hypothetical protein YP_003939904.1 manually curated; KEGG: efe:EFER_3358 hypothetical protein YP_003939905.1 KEGG: kpn:KPN_03762 outer membrane porin HofQ; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein YP_003939906.1 KEGG: kva:Kvar_0340 shikimate kinase; PFAM: shikimate kinase YP_003939907.1 KEGG: kva:Kvar_0341 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_003939908.1 PFAM: Sporulation domain-containing protein; KEGG: ent:Ent638_3801 hypothetical protein YP_003939909.1 KEGG: sek:SSPA3125 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_003939910.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: sbc:SbBS512_E3763 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_003939911.1 KEGG: kva:Kvar_0345 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003939912.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: cko:CKO_04805 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003939913.1 KEGG: ecr:ECIAI1_3521 hypothetical protein YP_003939914.1 KEGG: cko:CKO_04802 hypothetical protein YP_003939915.1 PFAM: alanine racemase domain protein; KEGG: cko:CKO_04801 hypothetical protein YP_003939916.1 KEGG: cko:CKO_04800 putative mutase; PFAM: metalloenzyme domain protein YP_003939917.1 PFAM: aryldialkylphosphatase; KEGG: cko:CKO_04799 putative hydrolase YP_003939918.1 KEGG: sfv:SFV_3383 hypothetical protein YP_003939919.1 PFAM: Protein of unknown function, YhfT; KEGG: ect:ECIAI39_3855 conserved hypothetical protein; putative inner membrane protein YP_003939920.1 KEGG: ecx:EcHS_A3571 hypothetical protein YP_003939921.1 KEGG: ect:ECIAI39_3852 siroheme synthase; TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Sirohaem synthase, dimerisation domain YP_003939922.1 KEGG: enc:ECL_04743 nitrite reductase small subunit; TIGRFAM: nitrite reductase [NAD(P)H], small subunit YP_003939923.1 KEGG: kva:Kvar_0349 nitrite reductase (NAD(P)H), large subunit; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region YP_003939924.1 KEGG: kva:Kvar_0350 cytosine deaminase; PFAM: Amidohydrolase 3 YP_003939925.1 PFAM: major facilitator superfamily MFS_1; KEGG: enc:ECL_04740 putative MFS transporter YP_003939926.1 KEGG: cro:ROD_44461 peptidyl-prolyl cis-trans isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type YP_003939927.1 KEGG: yhfG; uncharacterized protein YhfG YP_003939928.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: ses:SARI_04145 cell filamentation protein Fic YP_003939929.1 KEGG: cko:CKO_04782 para-aminobenzoate synthase component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I YP_003939930.1 KEGG: ent:Ent638_3786 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; TIGRFAM: succinylornithine transaminase family; acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III YP_003939931.1 TIGRFAM: integral membrane protein, YccS/YhfK family; KEGG: enc:ECL_04735 YccS/YhfK family integral membrane protein YP_003939932.1 KEGG: pam:PANA_3653 Crp; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp YP_003939933.1 PFAM: OsmC family protein; KEGG: ent:Ent638_3783 hypothetical protein YP_003939934.1 KEGG: esa:ESA_04378 hypothetical protein YP_003939935.1 PFAM: protein of unknown function UPF0270; KEGG: kva:Kvar_0362 protein of unknown function UPF0270 YP_003939936.1 PFAM: alpha/beta hydrolase fold; KEGG: kpe:KPK_0378 putative hydrolase YP_003939937.1 KEGG: cko:CKO_04760 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; Valyl-tRNA synthetase, class Ia, tRNA binding arm; SMART: AAA ATPase YP_003939938.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: enc:ECL_04717 glutathione-regulated potassium-efflux system ancillary protein KefG YP_003939939.1 KEGG: ent:Ent638_3768 glutathione-regulated potassium-efflux system protein KefB; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein YP_003939940.1 PFAM: Conserved hypothetical protein CHP02443; KEGG: kva:Kvar_0367 hypothetical protein YP_003939941.1 KEGG: kpu:KP1_5061 FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: peptidylprolyl isomerase FKBP-type YP_003939942.1 PFAM: SlyX family protein; KEGG: kva:Kvar_0369 SlyX family protein YP_003939943.1 KEGG: kpe:KPK_0385 FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type YP_003939944.1 PFAM: YheO-like domain-containing protein; KEGG: cro:ROD_44731 putative DNA binding protein YP_003939945.1 KEGG: eck:EC55989_3748 sulfur transfer complex subunit TusD; TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein YP_003939946.1 KEGG: kpu:KP1_5056 sulfur relay protein TusC; TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein YP_003939947.1 KEGG: cro:ROD_44761 tRNA 2-thiouridine synthesizing protein B; TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein YP_003939948.1 KEGG: cro:ROD_44771 30S ribosomal subunit protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23 YP_003939949.1 KEGG: kva:Kvar_0376 ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7 YP_003939950.1 KEGG: kpu:KP1_5050 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein YP_003939951.1 KEGG: cro:ROD_44801 elongation factor tu (EF-Tu); TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein YP_003939952.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ent:Ent638_3755 bacterioferritin-associated ferredoxin YP_003939953.1 KEGG: enc:ECL_04700 bacterioferritin; TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein YP_003939954.1 PFAM: peptidase A24A prepilin type IV; KEGG: enc:ECL_04699 leader peptidase HopD YP_003939955.1 KEGG: aat:D11S_0075 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10 YP_003939956.1 KEGG: sdy:SDY_3496 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3 YP_003939957.1 PFAM: ribosomal protein L4/L1e; KEGG: cro:ROD_45031 50S ribosomal subunit protein L4 YP_003939958.1 PFAM: Ribosomal protein L25/L23; KEGG: dda:Dd703_0407 50S ribosomal protein L23 YP_003939959.1 KEGG: enc:ECL_04694 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2 YP_003939960.1 KEGG: pam:PANA_3618 RpsS; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15 YP_003939961.1 KEGG: pam:PANA_3617 RplV; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17 YP_003939962.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: kva:Kvar_0389 ribosomal protein S3; SMART: KH domain protein YP_003939963.1 KEGG: kva:Kvar_0390 ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_003939964.1 KEGG: ctu:Ctu_38390 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29 YP_003939965.1 KEGG: ctu:Ctu_38380 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17 YP_003939966.1 KEGG: pwa:Pecwa_3991 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e YP_003939967.1 TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: dda:Dd703_0416 50S ribosomal protein L24; SMART: KOW domain protein YP_003939968.1 KEGG: kpu:KP1_5029 50S ribosomal protein L5 YP_003939969.1 KEGG: kva:Kvar_0396 ribosomal protein S14; manually curated; PFAM: ribosomal protein S14 YP_003939970.1 PFAM: ribosomal protein S8; KEGG: cro:ROD_45161 30S ribosomal subunit protein S8 YP_003939971.1 KEGG: kpn:KPN_03704 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain YP_003939972.1 KEGG: cro:ROD_45181 50S ribosomal subunit protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E YP_003939973.1 KEGG: ent:Ent638_3734 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5 YP_003939974.1 KEGG: pct:PC1_3804 ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30 YP_003939975.1 TIGRFAM: ribosomal protein L15; KEGG: ctu:Ctu_38280 50S ribosomal protein L15 YP_003939976.1 manually curated; TIGRFAM: preprotein translocase, SecY subunit; KEGG: sbc:SbBS512_E3685 preprotein translocase subunit SecY; PFAM: SecY protein YP_003939977.1 manually curated; TIGRFAM: ribosomal protein L36; KEGG: cro:ROD_45222 50S ribosomal subunit protein L36; PFAM: ribosomal protein L36 YP_003939978.1 KEGG: cro:ROD_45231 30S ribosomal subunit protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13 YP_003939979.1 manually curated; TIGRFAM: 30S ribosomal protein S11; KEGG: cro:ROD_45241 30S ribosomal subunit protein S11; PFAM: ribosomal protein S11 YP_003939980.1 TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: kva:Kvar_0407 ribosomal protein S4; SMART: RNA-binding S4 domain protein YP_003939981.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: ypb:YPTS_3865 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type YP_003939982.1 KEGG: kva:Kvar_0409 ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17 YP_003939983.1 PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; KEGG: cko:CKO_04706 hypothetical protein YP_003939984.1 TIGRFAM: Zn(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: kpu:KP1_5011 zinc-responsive transcriptional regulator; SMART: regulatory protein MerR YP_003939985.1 PFAM: protein of unknown function DUF331; KEGG: ssn:SSON_3432 hypothetical protein YP_003939986.1 KEGG: enc:ECL_04667 large-conductance mechanosensitive channel; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel YP_003939987.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: enc:ECL_04666 trk system potassium uptake protein TrkA YP_003939988.1 KEGG: see:SNSL254_A3677 16S rRNA methyltransferase B; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44 YP_003939989.1 TIGRFAM: methionyl-tRNA formyltransferase; KEGG: sdy:SDY_3464 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein YP_003939990.1 KEGG: kpu:KP1_5005 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003939991.1 KEGG: ecs:ECs4151 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein YP_003939992.1 PFAM: protein of unknown function DUF494; KEGG: ent:Ent638_3716 hypothetical protein YP_003939993.1 PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: kva:Kvar_0420 DNA topoisomerase type IA zn finger domain protein YP_003939994.1 PFAM: SUA5/yciO/yrdC domain; KEGG: cro:ROD_45391 hypothetical protein YP_003939995.1 KEGG: ssn:SSON_3422 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein YP_003939996.1 PFAM: protein of unknown function DUF1488; KEGG: ecz:ECS88_3668 hypothetical protein YP_003939997.1 KEGG: enc:ECL_04656 hypothetical protein YP_003939998.1 KEGG: cko:CKO_04684 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003939999.1 KEGG: sfx:S3526 putative transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003940000.1 KEGG: cko:CKO_04682 hypothetical protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003940001.1 KEGG: ecp:ECP_3363 putative amino-acid ABC transporter binding protein YhdW precursor; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003940002.1 KEGG: cko:CKO_04679 hypothetical protein YP_003940003.1 KEGG: kva:Kvar_0426 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_003940004.1 KEGG: kpe:KPK_0445 acriflavine resistance protein E; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003940005.1 PFAM: Tetracycline transcriptional repressor MAATS-type domain-containing protein; regulatory protein TetR; KEGG: kva:Kvar_0428 transcriptional regulator, TetR family YP_003940006.1 KEGG: eok:G2583_3982 hypothetical protein YP_003940007.1 PFAM: helix-turn-helix Fis-type; KEGG: etr:ETAE_3152 DNA-binding protein fis YP_003940008.1 manually curated; TIGRFAM: TIM-barrel protein, nifR3 family; KEGG: kva:Kvar_0430 TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS YP_003940009.1 KEGG: set:SEN3217 ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase YP_003940010.1 KEGG: kva:Kvar_0432 SSS sodium solute transporter superfamily; TIGRFAM: sodium/pantothenate symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_003940011.1 PFAM: protein of unknown function DUF997; KEGG: ctu:Ctu_03310 hypothetical protein YP_003940012.1 KEGG: cro:ROD_45581 biotin carboxylase (acetyl-CoA carboxylase subunit A); TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein YP_003940013.1 KEGG: kpu:KP1_4981 acetyl-CoA carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein YP_003940014.1 TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: cko:CKO_04665 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II YP_003940015.1 PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: enc:ECL_04638 putative sulfite oxidase subunit YedZ YP_003940016.1 PFAM: oxidoreductase molybdopterin binding; KEGG: cko:CKO_04662 putative sulfite oxidase subunit YedY YP_003940017.1 KEGG: cko:CKO_04661 hypothetical protein; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_003940018.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: kva:Kvar_0439 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein YP_003940019.1 KEGG: cro:ROD_45651 rod shape-determining protein; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl YP_003940020.1 KEGG: sek:SSPA3026 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC YP_003940021.1 KEGG: set:SEN3205 rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD YP_003940022.1 KEGG: efe:EFER_3225 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein YP_003940023.1 manually curated; TIGRFAM: ribonuclease, Rne/Rng family; KEGG: cro:ROD_45691 ribonuclease G (cytoplasmic axial filament protein); PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein YP_003940024.1 KEGG: kpu:KP1_4970 hypothetical protein YP_003940025.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cko:CKO_04652 protease TldD YP_003940026.1 KEGG: sea:SeAg_B3124 DNA-binding transcriptional activator FucR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003940027.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbo:SBO_3144 putative DNA-binding transcriptional regulator YP_003940028.1 PFAM: protein of unknown function DUF1656; KEGG: cro:ROD_45731 hypothetical protein YP_003940029.1 PFAM: secretion protein HlyD family protein; KEGG: enc:ECL_04624 p-hydroxybenzoic acid efflux subunit AaeA YP_003940030.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: enc:ECL_04623 p-hydroxybenzoic acid efflux subunit AaeB YP_003940031.1 PFAM: Barstar (barnase inhibitor); KEGG: sdy:SDY_3415 hypothetical protein YP_003940032.1 PFAM: protein of unknown function DUF1471; KEGG: kva:Kvar_0452 protein of unknown function DUF1471 YP_003940033.1 PFAM: protein of unknown function DUF1471; KEGG: ent:Ent638_3673 hypothetical protein YP_003940034.1 KEGG: kva:Kvar_0454 arginine repressor, ArgR; TIGRFAM: arginine repressor; PFAM: Arginine repressor-like YP_003940035.1 manually curated; KEGG: ecp:ECP_3320 hypothetical protein YP_003940036.1 KEGG: cro:ROD_45871 malate dehydrogenase; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase YP_003940037.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: periplasmic serine protease DegS; KEGG: degS; protease DegS; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_003940038.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: kpe:KPK_0488 serine endoprotease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_003940039.1 PFAM: protein of unknown function DUF1043; KEGG: set:SEN3180 cytochrome d ubiquinol oxidase subunit III YP_003940040.1 PFAM: AFG1-family ATPase; KEGG: cko:CKO_04636 hypothetical protein YP_003940041.1 KEGG: kva:Kvar_0469 ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13 YP_003940042.1 PFAM: ribosomal protein S9; KEGG: cro:ROD_45931 30S ribosomal subunit protein S9 YP_003940043.1 PFAM: Glutathione S-transferase domain; KEGG: kva:Kvar_0471 glutathione S-transferase domain protein YP_003940044.1 PFAM: Stringent starvation protein B; KEGG: kva:Kvar_0472 stringent starvation protein B YP_003940045.1 KEGG: ebr:ECB_03087 putative cryptic C4-dicarboxylate transporter DcuD; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like YP_003940046.1 KEGG: spq:SPAB_04154 glutamate synthase subunit beta; TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003940047.1 KEGG: kpu:KP1_4936 glutamate synthase subunit alpha; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein YP_003940048.1 TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; KEGG: yhcC; uncharacterized protein YhcC; SMART: Elongator protein 3/MiaB/NifB YP_003940049.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; KEGG: enc:ECL_04591 aerobic respiration control sensor protein ArcB; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; Hpt domain protein YP_003940050.1 PFAM: ThiJ/PfpI domain-containing protein; KEGG: cko:CKO_04612 isoprenoid biosynthesis protein with amidotransferase-like domain YP_003940051.1 KEGG: kpu:KP1_4929 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51 YP_003940052.1 KEGG: enc:ECL_04588 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003940053.1 KEGG: kva:Kvar_0484 hypothetical protein YP_003940054.1 KEGG: enc:ECL_04586 PTS IIA-like nitrogen-regulatory protein PtsN; TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 YP_003940055.1 KEGG: spq:SPAB_04139 putative sigma(54) modulation protein; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA YP_003940056.1 KEGG: kpu:KP1_4924 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor core-binding region; sigma-54 factor; sigma-54 DNA-binding domain protein YP_003940057.1 KEGG: cko:CKO_04604 putative ABC transporter ATP-binding protein YhbG; PFAM: ABC transporter related; SMART: AAA ATPase YP_003940058.1 KEGG: cro:ROD_46201 putative organic solvent tolerance protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein YP_003940059.1 PFAM: protein of unknown function DUF1239; KEGG: kva:Kvar_0490 protein of unknown function DUF1239 YP_003940060.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: ecq:ECED1_3856 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003940061.1 TIGRFAM: KpsF/GutQ family protein; KEGG: enc:ECL_04579 D-arabinose 5-phosphate isomerase; PFAM: sugar isomerase (SIS); CBS domain containing protein YP_003940062.1 KEGG: ent:Ent638_3632 putative calcium/sodium:proton antiporter; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region YP_003940063.1 KEGG: enc:ECL_04577 putative ABC transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003940064.1 PFAM: protein of unknown function DUF140; KEGG: kva:Kvar_0495 protein of unknown function DUF140 YP_003940065.1 PFAM: Mammalian cell entry related domain protein; KEGG: set:SEN3144 possible exported protein YP_003940066.1 PFAM: toluene tolerance family protein; KEGG: enc:ECL_04574 toluene tolerance protein Ttg2D YP_003940067.1 KEGG: kpu:KP1_4913 hypothetical protein YP_003940068.1 PFAM: BolA family protein; KEGG: ent:Ent638_3626 BolA family protein YP_003940069.1 KEGG: cko:CKO_04592 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_003940070.1 KEGG: kva:Kvar_0501 putative transcriptional regulator, Nlp YP_003940071.1 PFAM: Polyprenyl synthetase; KEGG: cro:ROD_46331 octaprenyl-diphosphate synthase YP_003940072.1 KEGG: ses:SARI_04321 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27 YP_003940073.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: kva:Kvar_0505 protein of unknown function DUF6 transmembrane YP_003940074.1 KEGG: kpn:KPN_03593 GTPase ObgE; TIGRFAM: GTP-binding protein Obg/CgtA; small GTP-binding protein; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related YP_003940075.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; KEGG: ssn:SSON_3330 D-alanyl-D-alanine carboxypeptidase/endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C YP_003940076.1 KEGG: kpu:KP1_4900 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein YP_003940077.1 PFAM: protein of unknown function UPF0044; KEGG: cko:CKO_04581 RNA-binding protein YhbY YP_003940078.1 KEGG: cko:CKO_04580 23S rRNA methyltransferase J; TIGRFAM: ribosomal RNA large subunit methyltransferase J; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ YP_003940079.1 SMART: AAA ATPase; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: kva:Kvar_0511 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein YP_003940080.1 TIGRFAM: dihydropteroate synthase; KEGG: ssn:SSON_3325 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003940081.1 KEGG: cro:ROD_46451 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase YP_003940082.1 KEGG: cko:CKO_04576 preprotein translocase subunit SecG; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit YP_003940083.1 KEGG: kva:Kvar_0515 hypothetical protein YP_003940084.1 PFAM: YfaZ family protein; KEGG: kva:Kvar_0516 YfaZ family protein YP_003940085.1 PFAM: OmpA/MotB domain protein; KEGG: sdy:SDY_0930 outer membrane protein A YP_003940086.1 KEGG: kva:Kvar_0517 putative transcriptional regulator, Crp/Fnr family YP_003940087.1 TIGRFAM: argininosuccinate synthase; KEGG: cko:CKO_04574 argininosuccinate synthase; PFAM: argininosuccinate synthase YP_003940088.1 PFAM: protein of unknown function DUF150; KEGG: kva:Kvar_0519 protein of unknown function DUF150 YP_003940089.1 KEGG: enc:ECL_04551 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein YP_003940090.1 KEGG: enc:ECL_04550 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Initiation factor 2 associated domain protein ; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein YP_003940091.1 KEGG: enc:ECL_04549 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A YP_003940092.1 KEGG: enc:ECL_04548 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B YP_003940093.1 KEGG: cko:CKO_04564 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15 YP_003940094.1 SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: kva:Kvar_0525 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein YP_003940095.1 KEGG: enc:ECL_04545 putative lipoprotein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat YP_003940096.1 KEGG: kva:Kvar_0527 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003940097.1 KEGG: mtr; tryptophan-specific transport protein; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease YP_003940098.1 KEGG: cai:Caci_5601 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003940099.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA0882 ABC transporter, permease YP_003940100.1 KEGG: cai:Caci_5603 ABC transporter substrate-binding protein YP_003940101.1 KEGG: enc:ECL_04542 putative luciferase family monooxygenase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup YP_003940102.1 PFAM: peptidase U32; KEGG: cko:CKO_04554 hypothetical protein YP_003940103.1 PFAM: peptidase U32; KEGG: ssn:SSON_3304 putative collagenase YP_003940104.1 PFAM: Sterol-binding domain protein; KEGG: enc:ECL_04539 hypothetical protein YP_003940105.1 PFAM: GCN5-related N-acetyltransferase; KEGG: kva:Kvar_0533 GCN5-related N-acetyltransferase YP_003940106.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: kpu:KP1_4869 GIY-YIG nuclease superfamily protein YP_003940107.1 KEGG: cro:ROD_46781 hypothetical protein YP_003940108.1 PFAM: Semialdehyde dehydrogenase NAD - binding; KEGG: cko:CKO_04547 hypothetical protein YP_003940109.1 KEGG: kpu:KP1_4864 hypothetical protein; PFAM: transport-associated; SMART: Transport-associated and nodulation region YP_003940110.1 PFAM: sugar isomerase (SIS); KEGG: kpu:KP1_4862 DnaA initiator-associating protein DiaA YP_003940111.1 PFAM: Uncharacterised protein family UPF0102; KEGG: enc:ECL_04530 putative endonuclease YP_003940112.1 KEGG: enc:ECL_04529 LppC family lipoprotein YP_003940113.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sdy:SDY_3325 hypothetical protein YP_003940114.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: kpu:KP1_4857 hypothetical protein YP_003940115.1 PFAM: aminotransferase class I and II; KEGG: cko:CKO_04539 hypothetical protein YP_003940116.1 TIGRFAM: PTS system, maltose and glucose-specific IIBC subunit; PTS system, glucose-like IIB subunint; KEGG: cko:CKO_04538 hypothetical protein; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003940117.1 TIGRFAM: class II aldolase, tagatose bisphosphate family; ketose-bisphosphate aldolase; KEGG: eok:G2583_3861 tagatose-1,6-bisphosphate aldolase KbaY; PFAM: ketose-bisphosphate aldolase class-II YP_003940118.1 KEGG: pwa:Pecwa_2392 sugar isomerase, AgaS family; TIGRFAM: sugar isomerase, AgaS family; PFAM: sugar isomerase (SIS) YP_003940119.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: eum:ECUMN_3619 N-acetylglucosamine-6-phosphate deacetylase (GlcNAc 6-P deacetylase); PFAM: amidohydrolase YP_003940120.1 PFAM: PTS system fructose subfamily IIA component; KEGG: ecq:ECED1_3798 putative phosphotransferase system enzyme subunit (N-acetyl-galactosamine / galactosamine PTS system enzyme IIA component) YP_003940121.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: enc:ECL_04522 N-acetylgalactosamine-specific PTS system transporter subunit IID YP_003940122.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: enc:ECL_04521 N-acetylgalactosamine-specific PTS system transporter subunit IIC YP_003940123.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; KEGG: cko:CKO_04531 PTS system N-acetylgalactosamine-specific transporter subunit IIB; PFAM: PTS system sorbose subfamily IIB component YP_003940124.1 KEGG: eum:ECUMN_3614 tagatose 6-phosphate aldolase 1, KbaZ subunit; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ YP_003940125.1 KEGG: cko:CKO_04529 DNA-binding transcriptional regulator AgaR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003940126.1 KEGG: plu:plu0832 putative aga operon transcriptional repressor; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003940127.1 PFAM: ROK family protein; KEGG: spe:Spro_2576 ROK family protein YP_003940128.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: spe:Spro_2575 oxidoreductase domain-containing protein YP_003940129.1 KEGG: spe:Spro_2574 ABC transporter-related protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase YP_003940130.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2573 binding-protein-dependent transport systems inner membrane component YP_003940131.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2572 binding-protein-dependent transport systems inner membrane component YP_003940132.1 PFAM: extracellular solute-binding protein family 1; KEGG: spe:Spro_2571 extracellular solute-binding protein YP_003940133.1 KEGG: esa:ESA_03358 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003940134.1 PFAM: ABC-2 type transporter; KEGG: eum:ECUMN_3434 polysialic acid transport protein YP_003940135.1 PFAM: transposase IS3/IS911 family protein; KEGG: eoh:ECO103_p90 putative IS629 transposase OrfA YP_003940136.1 KEGG: bcu:BCAH820_5363 hypothetical protein YP_003940137.1 KEGG: esa:ESA_03357 hypothetical protein YP_003940138.1 KEGG: pvx:PVX_092280 hypothetical protein YP_003940139.1 PFAM: glycosyl transferase group 1; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sna:Snas_2409 glycosyl transferase group 1 YP_003940140.1 PFAM: protein of unknown function DUF1471; KEGG: spe:Spro_1012 hypothetical protein YP_003940141.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: set:SEN3086 DNA-binding transcriptional activator TdcA YP_003940142.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ent:Ent638_3564 threonine dehydratase YP_003940143.1 KEGG: ses:SARI_04376 threonine/serine transporter TdcC; TIGRFAM: serine transporter; PFAM: Tryptophan/tyrosine permease YP_003940144.1 KEGG: ent:Ent638_3562 propionate/acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase YP_003940145.1 TIGRFAM: formate acetyltransferase; KEGG: ecm:EcSMS35_3410 formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical YP_003940146.1 KEGG: sbc:SbBS512_E3244 hypothetical protein; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP YP_003940147.1 TIGRFAM: L-serine dehydratase 1; KEGG: cko:CKO_04512 hypothetical protein; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_003940148.1 PFAM: protein of unknown function Spy-related; KEGG: kva:Kvar_0563 protein of unknown function Spy-related protein YP_003940149.1 KEGG: seg:SG3135 putative membrane transport protein YP_003940150.1 KEGG: ebw:BWG_2818 hypothetical protein YP_003940151.1 KEGG: kpu:KP1_4833 hypothetical protein YP_003940152.1 PFAM: Pirin domain protein; KEGG: enc:ECL_04505 pirin domain-containing protein YP_003940153.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ses:SARI_04384 hypothetical protein YP_003940154.1 PFAM: protein of unknown function DUF805; KEGG: enc:ECL_04503 hypothetical protein YP_003940155.1 KEGG: yqjG; uncharacterized protein YqjG; PFAM: Glutathione S-transferase domain YP_003940156.1 PFAM: DoxX family protein; KEGG: kva:Kvar_0569 DoxX family protein YP_003940157.1 KEGG: ses:SARI_04396 hypothetical protein YP_003940158.1 KEGG: cko:CKO_04501 hypothetical protein YP_003940159.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: enc:ECL_04498 hypothetical protein YP_003940160.1 PFAM: protein of unknown function DUF1090; KEGG: kva:Kvar_0573 protein of unknown function DUF1090 YP_003940161.1 KEGG: kva:Kvar_0574 hypothetical protein YP_003940162.1 PFAM: SNARE associated Golgi protein; KEGG: cko:CKO_04497 hypothetical protein YP_003940163.1 KEGG: cko:CKO_04496 DNA-binding transcriptional repressor ExuR; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH YP_003940164.1 KEGG: esa:ESA_03504 hypothetical protein; TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1 YP_003940165.1 KEGG: ctu:Ctu_04620 glucuronate isomerase; PFAM: Glucuronate isomerase YP_003940166.1 KEGG: ent:Ent638_3545 D-altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein YP_003940167.1 PFAM: sodium:dicarboxylate symporter; KEGG: sed:SeD_A3582 serine/threonine transporter SstT YP_003940168.1 PFAM: Integral membrane protein TerC; KEGG: efe:EFER_4389 conserved hypothetical protein; putative inner membrane protein, part of terminus YP_003940169.1 PFAM: oxidoreductase domain protein; KEGG: cro:ROD_48011 putative oxidoreductase YP_003940170.1 PFAM: protein of unknown function DUF45; KEGG: enc:ECL_04487 hypothetical protein YP_003940171.1 KEGG: kva:Kvar_0589 rRNA (guanine-N(2)-)-methyltransferase; PFAM: methyltransferase small YP_003940172.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: enc:ECL_04485 2,4-dienoyl-CoA reductase YP_003940173.1 PFAM: Carbohydrate kinase, FGGY-like; KEGG: kpu:KP1_4807 autoinducer-2 (AI-2) kinase YP_003940174.1 PFAM: sugar-binding domain-containing protein; KEGG: kva:Kvar_0592 transcriptional regulator, DeoR family YP_003940175.1 KEGG: kpe:KPK_0605 autoinducer-2 ABC transporter, ATP-binding protein LsrA; PFAM: ABC transporter related; SMART: AAA ATPase YP_003940176.1 PFAM: inner-membrane translocator; KEGG: kpu:KP1_4803 putative ABC transport system permease component YP_003940177.1 PFAM: inner-membrane translocator; KEGG: ent:Ent638_3534 inner-membrane translocator YP_003940178.1 KEGG: enc:ECL_04479 AI-2 transport system substrate-binding protein YP_003940179.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: kpu:KP1_4800 aldolase YP_003940180.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: enc:ECL_04477 autoinducer-2 (AI-2) modifying protein LsrG YP_003940181.1 PFAM: alpha-L-rhamnosidase; KEGG: eoh:ECO103_3825 putative glycosyl hydrolase YP_003940182.1 PFAM: amino acid permease-associated region; KEGG: eoi:ECO111_3900 putative transporter YP_003940183.1 PFAM: amino acid permease-associated region; KEGG: aha:AHA_0209 amino acid permease YP_003940184.1 PFAM: Conserved hypothetical protein CHP00022; KEGG: ecm:EcSMS35_3371 cryptic beta-D-galactosidase subunit beta YP_003940185.1 KEGG: ecm:EcSMS35_3370 cryptic beta-D-galactosidase subunit alpha; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 42 domain 5 loop region YP_003940186.1 KEGG: ect:ECIAI39_3573 DNA-binding transcriptional repressor EbgR; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003940187.1 PFAM: t-RNA-binding domain-containing protein; KEGG: sbo:SBO_2933 hypothetical protein YP_003940188.1 KEGG: stt:t0021 hypothetical protein YP_003940189.1 PFAM: Fimbrial protein domain-containing protein; KEGG: ses:SARI_02971 fimbrial subunit YP_003940190.1 PFAM: Fimbrial protein domain-containing protein; KEGG: kva:Kvar_0777 fimbrial protein YP_003940191.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ses:SARI_02970 hypothetical protein YP_003940192.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sek:SSPA0021 fimbrial usher YP_003940193.1 PFAM: Fimbrial protein domain-containing protein; KEGG: sek:SSPA0022 fimbrial subunit YP_003940194.1 PFAM: Fimbrial protein domain-containing protein; KEGG: stm:STM0025 fimbrial subunit YP_003940195.1 PFAM: Fimbrial protein domain-containing protein; KEGG: sew:SeSA_A0028 fimbrial protein YP_003940196.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: see:SNSL254_A0029 fimbrial chaperone YP_003940197.1 TIGRFAM: putrescine aminotransferase; KEGG: ebr:ECB_02942 putrescine--2-oxoglutarate aminotransferase; PFAM: aminotransferase class-III YP_003940198.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; KEGG: enc:ECL_04457 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; PAC repeat-containing protein YP_003940199.1 PFAM: transcriptional regulator PadR family protein; KEGG: ent:Ent638_3525 PadR family transcriptional regulator YP_003940200.1 PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: kva:Kvar_0601 FAD-binding 9 siderophore-interacting domain protein YP_003940201.1 PFAM: heat shock protein DnaJ domain protein; KEGG: enc:ECL_04453 heat shock protein DnaJ domain-containing protein YP_003940202.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: enc:ECL_02361 cystathionine gamma-lyase YP_003940203.1 KEGG: enc:ECL_02360 cystathionine beta-synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; CBS domain containing protein; SMART: CBS domain containing protein YP_003940204.1 KEGG: enc:ECL_02359 D-methionine transport system ATP-binding protein; PFAM: ABC transporter related; NIL domain; SMART: AAA ATPase YP_003940205.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cko:CKO_01703 hypothetical protein YP_003940206.1 PFAM: NLPA lipoprotein; KEGG: ent:Ent638_1773 NlpA lipoprotein YP_003940207.1 KEGG: kpe:KPK_0766 suppressor for copper-sensitivity A YP_003940208.1 KEGG: kpu:KP1_4621 copper-sensitivity suppressor protein B YP_003940209.1 PFAM: DSBA oxidoreductase; KEGG: kpu:KP1_4622 copper-sensitivity suppressor protein C YP_003940210.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: kva:Kvar_0731 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003940211.1 KEGG: tgu:100223417 similar to unc-84 homolog B YP_003940212.1 KEGG: ent:Ent638_3408 outer membrane autotransporter; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein YP_003940213.1 PFAM: heat shock protein DnaJ domain protein; KEGG: ctu:Ctu_10100 hypothetical protein YP_003940214.1 PFAM: Heat shock protein 70; KEGG: esa:ESA_02869 hypothetical protein YP_003940215.1 KEGG: caa:Caka_2752 surface antigen (D15) YP_003940217.1 PFAM: small multidrug resistance protein; KEGG: efe:EFER_2001 putative multidrug resistance protein YP_003940218.1 PFAM: small multidrug resistance protein; KEGG: ect:ECIAI39_4216 putative membrane transport protein precursor YP_003940219.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: acd:AOLE_12545 short-chain dehydrogenase/reductase SDR YP_003940220.1 KEGG: etr:ETAE_1773 glycogen synthesis protein YP_003940221.1 PFAM: Domain of unknown function DUF1889; KEGG: cko:CKO_04469 hypothetical protein YP_003940222.1 PFAM: Nucleotidyltransferase, predicted; KEGG: ecr:ECIAI1_4247 hypothetical protein YP_003940223.1 PFAM: protein of unknown function UPF0027; KEGG: cro:ROD_37281 hypothetical protein YP_003940224.1 KEGG: eoh:ECO103_4769 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein YP_003940225.1 KEGG: cro:ROD_37291 transcriptional regulator; PFAM: regulator of RNA terminal phosphate cyclase; sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase YP_003940226.1 PFAM: transposase IS3/IS911 family protein; KEGG: dze:Dd1591_1227 transposase IS3/IS911 family protein YP_003940227.1 PFAM: integrase family protein; KEGG: eoh:ECO103_3814 putative integrase YP_003940228.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: ypy:YPK_0608 filamentation induced by cAMP protein Fic YP_003940229.1 KEGG: ypb:YPTS_3604 hypothetical protein YP_003940230.1 KEGG: dze:Dd1591_0921 hypothetical protein YP_003940231.1 PFAM: Prophage CP4-57 regulatory; KEGG: dze:Dd1591_0922 phage transcriptional regulator, AlpA YP_003940232.1 KEGG: seg:SG0292 hypothetical protein YP_003940233.1 KEGG: seg:SG0293 hypothetical protein YP_003940234.1 KEGG: pmr:PMI1917 hypothetical protein YP_003940235.1 KEGG: pmr:PMI1916 hypothetical protein YP_003940236.1 KEGG: pau:PA14_03370 hypothetical protein YP_003940237.1 SMART: DEAD-like helicase; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; KEGG: wsu:WS1129 hypothetical protein; PFAM: type III restriction protein res subunit; protein of unknown function DUF450 YP_003940238.1 PFAM: restriction modification system DNA specificity domain; KEGG: ana:all2687 type I restriction-modification enzyme S subunit YP_003940239.1 KEGG: ana:alr0499 type I site-specific deoxyribonuclease; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase YP_003940240.1 KEGG: ssv:SSU98_1796 hypothetical protein YP_003940241.1 KEGG: bxe:Bxe_A1800 ATP-dependent endonuclease YP_003940242.1 KEGG: bxe:Bxe_A1801 hypothetical protein YP_003940243.1 PFAM: GTP-binding protein HSR1-related; KEGG: ebw:BWG_2389 CP4-57 prophage; putative GTP-binding protein YP_003940244.1 KEGG: ebw:BWG_0234 CP4-6 prophage; hypothetical protein YP_003940245.1 KEGG: ddc:Dd586_2893 regulatory protein DeoR YP_003940246.1 KEGG: seg:SG0278 hypothetical protein YP_003940247.1 KEGG: eoi:ECO111_0314 hypothetical protein YP_003940248.1 PFAM: Antirestriction protein; KEGG: ecm:EcSMS35_0307 antirestriction protein YP_003940249.1 KEGG: ebw:BWG_2397 CP4-57 prophage; putative DNA repair protein; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC YP_003940250.1 PFAM: protein of unknown function DUF987; KEGG: ecm:EcSMS35_0309 hypothetical protein YP_003940251.1 PFAM: YagBYeeUYfjZ family protein; KEGG: ecm:EcSMS35_0310 putative antitoxin module of toxin-antitoxin system YP_003940252.1 PFAM: protein of unknown function DUF1219; KEGG: ebw:BWG_0226 CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system YP_003940253.1 KEGG: xbo:XBJ1_1836 hypothetical protein YP_003940254.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: ent:Ent638_3474 G/U mismatch-specific DNA glycosylase YP_003940255.1 KEGG: kpu:KP1_4766 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma-70 1.1 domain protein; sigma-70 region 1.2; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein YP_003940256.1 TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; DNA primase, DnaB-helicase binding domain; DNA primase DnaG DnaB-binding; KEGG: kva:Kvar_0621 DNA primase; SMART: DNA primase DnaG DnaB-binding; Toprim sub domain-containing protein YP_003940257.1 KEGG: pam:PANA_3388 RpsU; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21 YP_003940258.1 TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: sbc:SbBS512_E3498 putative DNA-binding/iron metalloprotein/AP endonuclease; PFAM: peptidase M22 glycoprotease YP_003940259.1 PFAM: protein of unknown function DUF205; KEGG: set:SEN3049 putative glycerol-3-phosphate acyltransferase PlsY YP_003940260.1 TIGRFAM: dihydroneopterin aldolase; KEGG: sdy:SDY_3241 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; PFAM: dihydroneopterin aldolase YP_003940261.1 KEGG: ent:Ent638_3460 undecaprenyl pyrophosphate phosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_003940262.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: cko:CKO_04444 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_003940263.1 manually curated; PFAM: SH3 type 3 domain protein; KEGG: kpu:KP1_4746 putative signal transduction protein; SMART: SH3 domain protein YP_003940264.1 PFAM: adenylate cyclase; KEGG: kpu:KP1_4744 hypothetical protein YP_003940265.1 KEGG: cko:CKO_04439 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase YP_003940266.1 KEGG: enc:ECL_04378 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase YP_003940267.1 PFAM: protein of unknown function DUF526; KEGG: ent:Ent638_3454 hypothetical protein YP_003940268.1 KEGG: enc:ECL_04376 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase YP_003940269.1 KEGG: ecc:c3794 hypothetical protein YP_003940270.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: hypothetical fimbrial chaperone YqiH YP_003940271.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: ecq:ECED1_3711 putative outer membrane usher protein YP_003940272.1 PFAM: Fimbrial protein domain-containing protein; KEGG: Yqi fimbriae subunit YgiL YP_003940273.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: enc:ECL_04366 hypothetical protein YP_003940274.1 PFAM: glutathionylspermidine synthase; KEGG: kva:Kvar_0645 trypanothione synthase YP_003940275.1 PFAM: protein of unknown function DUF1190; KEGG: seh:SeHA_C3438 hypothetical protein YP_003940276.1 KEGG: kpu:KP1_4730 outer membrane channel protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein YP_003940277.1 KEGG: kpn:KPN_03448 ADP-ribose pyrophosphatase NudF; PFAM: NUDIX hydrolase YP_003940278.1 PFAM: protein of unknown function DUF1249; KEGG: enc:ECL_04361 hypothetical protein YP_003940279.1 PFAM: Calcineurin phosphoesterase domain protein; metallophosphoesterase; KEGG: kpu:KP1_4727 cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_003940280.1 PFAM: protein of unknown function UPF0227; KEGG: kpu:KP1_4726 esterase YqiA YP_003940281.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA topoisomerase IV, B subunit; KEGG: kva:Kvar_0652 DNA topoisomerase IV, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein YP_003940282.1 KEGG: ypy:YPK_2496 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7 YP_003940283.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pct:PC1_0343 tripartite ATP-independent periplasmic transporter DctQ component YP_003940284.1 KEGG: cko:CKO_03565 hypothetical protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_003940285.1 KEGG: tet:TTHERM_00526610 hypothetical protein YP_003940286.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: enc:ECL_04346 antibiotic biosynthesis monooxygenase YP_003940287.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sbc:SbBS512_E3461 modulator of drug activity B YP_003940288.1 KEGG: kpu:KP1_4721 sensor protein QseC; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003940289.1 KEGG: kpu:KP1_4720 DNA-binding transcriptional regulator QseB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003940290.1 PFAM: protein of unknown function DUF388, OB-fold; KEGG: ent:Ent638_3428 hypothetical protein YP_003940291.1 KEGG: sea:SeAg_B3356 transcription activator, effector binding; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003940292.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, A subunit; KEGG: kpn:KPN_03437 DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_003940293.1 SMART: phospholipid/glycerol acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; KEGG: enc:ECL_04340 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase YP_003940294.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: kpn:KPN_03435 repressor protein for FtsI YP_003940295.1 KEGG: kpu:KP1_4714 hypothetical protein; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003940296.1 KEGG: sea:SeAg_B3343 hypothetical protein YP_003940297.1 KEGG: enc:ECL_04335 2,5-diketo-D-gluconate reductase A; PFAM: aldo/keto reductase YP_003940298.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: enc:ECL_04334 iron-containing alcohol dehydrogenase YP_003940299.1 KEGG: cko:CKO_04404 hypothetical protein; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003940300.1 PFAM: SNARE associated Golgi protein; KEGG: cro:ROD_35571 hypothetical protein YP_003940301.1 KEGG: cko:CKO_04402 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003940302.1 KEGG: kva:Kvar_0668 TonB-system energizer ExbB; TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel YP_003940303.1 KEGG: ses:SARI_04466 biopolymer transport protein ExbD; TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR YP_003940304.1 KEGG: cko:CKO_04399 hypothetical protein YP_003940305.1 KEGG: ent:Ent638_3413 hypothetical protein YP_003940306.1 KEGG: cko:CKO_04397 hypothetical protein YP_003940307.1 PFAM: aldo/keto reductase; KEGG: cko:CKO_04396 aldo-keto reductase YP_003940308.1 KEGG: cko:CKO_04394 hypothetical protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003940309.1 KEGG: efe:EFER_2941 hypothetical protein YP_003940310.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: ent:Ent638_3404 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAC repeat-containing protein YP_003940311.1 KEGG: enc:ECL_04319 hypothetical protein YP_003940312.1 PFAM: Glutathione S-transferase domain; KEGG: kva:Kvar_0673 glutathione S-transferase domain protein YP_003940313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rme:Rmet_1897 LysR family transcriptional regulator YP_003940314.1 PFAM: Aldehyde Dehydrogenase; KEGG: reu:Reut_A1903 aldehyde dehydrogenase YP_003940315.1 KEGG: kpu:KP1_4691 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; PFAM: CHAP domain containing protein; glutathionylspermidine synthase YP_003940316.1 PFAM: regulatory protein LysR; KEGG: cro:ROD_06471 LysR-family transcriptional regulator YP_003940317.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ent:Ent638_0144 LysR family transcriptional regulator YP_003940318.1 KEGG: sec:SCV11 hypothetical protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003940319.1 PFAM: secretion protein HlyD family protein; KEGG: sea:SeAg_B3899 secretion protein HlyD family protein YP_003940320.1 KEGG: eok:G2583_4322 inner membrane protein YiaW YP_003940321.1 KEGG: cko:CKO_02450 hypothetical protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003940322.1 PFAM: Uncharacterised conserved protein UCP014753; KEGG: ctu:Ctu_14700 hypothetical protein YP_003940323.1 TIGRFAM: oligosaccharide/H+ symporter, major facilitator superfamily (MFS); KEGG: enc:ECL_04349 major facilitator superfamily oligosaccharide/H+ symporter YP_003940324.1 PFAM: glycosyl hydrolase family 88; KEGG: enc:ECL_04348 glycosyl hydrolase family protein YP_003940325.1 PFAM: ThiJ/PfpI domain-containing protein; KEGG: cko:CKO_01049 hypothetical protein YP_003940326.1 PFAM: protein of unknown function DUF1971; KEGG: kpu:KP1_3657 putative tellurite resistance protein YP_003940327.1 PFAM: Domain of unknown function DUF1869; KEGG: kpu:KP1_3656 hypothetical protein YP_003940328.1 KEGG: dda:Dd703_0941 acyl carrier protein YP_003940329.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dda:Dd703_0940 AMP-dependent synthetase and ligase YP_003940330.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: eca:ECA3129 peptidoglycan biosynthesis protein YP_003940331.1 KEGG: dze:Dd1591_0950 hypothetical protein YP_003940332.1 KEGG: eca:ECA3130 poly(glycerophosphate chain) D-alanine transfer protein YP_003940333.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cro:ROD_15461 diguanylate cyclase YddV; SMART: GGDEF domain containing protein YP_003940334.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: efe:EFER_1580 cAMP phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein YP_003940335.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: esa:ESA_02126 hypothetical protein YP_003940336.1 PFAM: GCN5-related N-acetyltransferase; KEGG: esa:ESA_02125 hypothetical protein YP_003940337.1 KEGG: pmr:PMI0992 hypothetical protein YP_003940338.1 PFAM: protein of unknown function DUF554; KEGG: enc:ECL_04304 hypothetical protein YP_003940339.1 KEGG: enc:ECL_04303 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein YP_003940340.1 KEGG: enc:ECL_04302 two-component system, CitB family, response regulator CitB; PFAM: response regulator receiver; SMART: response regulator receiver YP_003940341.1 KEGG: ent:Ent638_3378 signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein YP_003940342.1 PFAM: Citrate carrier protein; KEGG: enc:ECL_04300 citrate carrier protein YP_003940343.1 KEGG: ent:Ent638_3376 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_003940344.1 SMART: Citrate lyase ligase domain protein; TIGRFAM: citrate lyase ligase; cytidyltransferase-related domain protein; KEGG: ent:Ent638_3375 citrate lyase ligase; PFAM: Citrate lyase ligase domain protein; GCN5-related N-acetyltransferase YP_003940345.1 TIGRFAM: citrate lyase acyl carrier protein; KEGG: ent:Ent638_3374 citrate lyase subunit gamma YP_003940346.1 TIGRFAM: citrate lyase, beta subunit; KEGG: enc:ECL_04296 citrate lyase, beta subunit; PFAM: HpcH/HpaI aldolase YP_003940347.1 TIGRFAM: citrate lyase, alpha subunit; KEGG: enc:ECL_04295 citrate lyase, alpha subunit; PFAM: Citrate lyase alpha subunit YP_003940348.1 TIGRFAM: holo-ACP synthase CitX; KEGG: enc:ECL_04294 phosphoribosyl-dephospho-CoA transferase; PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase YP_003940349.1 TIGRFAM: triphosphoribosyl-dephospho-CoA synthase CitG; KEGG: ent:Ent638_3370 triphosphoribosyl-dephospho-CoA synthase; PFAM: triphosphoribosyl-dephospho-CoA protein YP_003940350.1 TIGRFAM: nucleoside transporter; KEGG: cko:CKO_04339 hypothetical protein YP_003940351.1 PFAM: Lytic transglycosylase catalytic; KEGG: kpu:KP1_4675 murein transglycosylase C YP_003940352.1 PFAM: Fe(II) trafficking protein YggX; KEGG: cko:CKO_04337 hypothetical protein YP_003940353.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: kpu:KP1_4673 adenine DNA glycosylase; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_003940354.1 KEGG: ent:Ent638_3365 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_003940355.1 PFAM: protein of unknown function DUF469; KEGG: sdy:SDY_3113 hypothetical protein YP_003940356.1 KEGG: cko:CKO_04333 hypothetical protein YP_003940357.1 manually curated; KEGG: kpe:KPK_1364 hypothetical protein YP_003940358.1 KEGG: cko:CKO_04332 L-asparaginase II; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase YP_003940359.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; KEGG: eok:G2583_3614 putative oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_003940360.1 KEGG: enc:ECL_04283 putative deoxyribonucleotide triphosphate pyrophosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein YP_003940361.1 PFAM: protein of unknown function DUF167; KEGG: kpu:KP1_4664 hypothetical protein YP_003940362.1 PFAM: protein of unknown function YGGT; KEGG: kpn:KPN_03386 hypothetical protein YP_003940363.1 PFAM: alanine racemase domain protein; KEGG: kpe:KPK_0724 alanine racemase family YP_003940364.1 KEGG: kpe:KPK_0725 twitching motility family protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E YP_003940365.1 KEGG: kva:Kvar_0698 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003940366.1 KEGG: enc:ECL_04278 putative Holliday junction resolvase; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold YP_003940367.1 PFAM: protein of unknown function DUF179; KEGG: ent:Ent638_3352 hypothetical protein YP_003940368.1 TIGRFAM: glutathione synthetase; KEGG: efe:EFER_2886 glutathione synthetase; PFAM: glutathione synthetase ATP-binding; glutathione synthetase domain protein YP_003940369.1 PFAM: protein of unknown function DUF558; KEGG: ent:Ent638_3350 16S ribosomal RNA methyltransferase RsmE YP_003940370.1 KEGG: enc:ECL_04274 deoxyribonuclease I; PFAM: Endonuclease I YP_003940371.1 KEGG: ent:Ent638_3348 hypothetical protein; manually curated; SMART: protein of unknown function SprT YP_003940372.1 TIGRFAM: sugar transporter; KEGG: kva:Kvar_0705 sugar transporter YP_003940373.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: enc:ECL_04271 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_003940374.1 manually curated; KEGG: eoj:ECO26_4038 hypothetical protein YP_003940375.1 KEGG: cro:ROD_50481 biosynthetic arginine decarboxylase; TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_003940376.1 KEGG: ent:Ent638_3343 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase YP_003940377.1 PFAM: peptidase M48 Ste24p; KEGG: kpu:KP1_4646 hypothetical protein YP_003940378.1 KEGG: kva:Kvar_0711 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region YP_003940379.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sbo:SBO_3055 putative mannitol phosphotransferase subunit EIIA YP_003940380.1 TIGRFAM: PTS system, mannitol-specific IIC subunit; KEGG: sbc:SbBS512_E3365 PTS system, mannitol-specific cryptic EIICB component; PFAM: phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit YP_003940381.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ses:SARI_04565 hypothetical protein YP_003940382.1 TIGRFAM: fructose-1,6-bisphosphatase, class II; KEGG: efe:EFER_2862 fructose-1,6-bisphosphatase II-like protein; PFAM: GlpX family protein YP_003940383.1 PFAM: Mannitol repressor; KEGG: ses:SARI_04567 putative DNA-binding transcriptional regulator YP_003940384.1 KEGG: cko:CKO_04303 putative fructose transport system kinase YP_003940385.1 TIGRFAM: D-erythrose-4-phosphate dehydrogenase; KEGG: kva:Kvar_0712 D-erythrose-4-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_003940386.1 KEGG: enc:ECL_04246 phosphoglycerate kinase; PFAM: phosphoglycerate kinase YP_003940387.1 KEGG: set:SEN2911 fructose-bisphosphate aldolase; TIGRFAM: fructose-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003940388.1 PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; KEGG: cko:CKO_04285 mechanosensitive channel MscS YP_003940389.1 KEGG: cro:ROD_50761 arginine exporter; TIGRFAM: L-lysine exporter; PFAM: Lysine exporter protein (LYSE/YGGA) YP_003940390.1 KEGG: cro:ROD_50771 hypothetical protein; manually curated; PFAM: protein of unknown function DUF541 YP_003940391.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ses:SARI_04581 hypothetical protein YP_003940392.1 TIGRFAM: succinate CoA transferase; KEGG: ssn:SSON_3071 putative coenzyme A transferase; PFAM: acetyl-CoA hydrolase/transferase YP_003940393.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ses:SARI_04583 methylmalonyl-CoA decarboxylase YP_003940394.1 KEGG: ssn:SSON_3069 arginine/ornithine transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein YP_003940395.1 TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: ect:ECIAI39_3331 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_003940396.1 KEGG: kva:Kvar_0718 transcriptional regulator, ArgP, LysR family; TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate-binding YP_003940397.1 TIGRFAM: ribose 5-phosphate isomerase; KEGG: enc:ECL_04240 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase YP_003940398.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: kpu:KP1_4635 D-3-phosphoglycerate dehydrogenase YP_003940399.1 manually curated; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: enc:ECL_04238 putative ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_003940400.1 PFAM: protein of unknown function DUF710; KEGG: cko:CKO_04275 Z-ring-associated protein YP_003940401.1 KEGG: sfv:SFV_2957 hypothetical protein; TIGRFAM: yecA family protein; PFAM: Uncharacterised protein family UPF0149 (YgfB) YP_003940402.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: kpe:KPK_0756 proline aminopeptidase P II YP_003940403.1 KEGG: enc:ECL_04234 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: 2-polyprenyl-6-methoxyphenol 4-hydroxylase; Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase YP_003940404.1 KEGG: kva:Kvar_0726 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase YP_003940405.1 KEGG: ecc:c3485 glycine cleavage system aminomethyltransferase T; TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel YP_003940406.1 KEGG: kpe:KPK_0760 glycine cleavage system protein H; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein YP_003940407.1 KEGG: cko:CKO_04266 glycine dehydrogenase; TIGRFAM: glycine dehydrogenase; PFAM: Glycine cleavage system P-protein-like YP_003940408.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: enc:ECL_04229 hypothetical protein YP_003940409.1 PFAM: glycoside hydrolase family 1; KEGG: cko:CKO_04265 hypothetical protein YP_003940410.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: enc:ECL_04227 putative RpiR family transcriptional regulator YP_003940411.1 PFAM: protein of unknown function DUF437; KEGG: efe:EFER_2836 hypothetical protein YP_003940412.1 KEGG: cko:CKO_04262 hypothetical protein; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein YP_003940413.1 KEGG: kpe:KPK_0772 putative global regulator; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase) YP_003940414.1 PFAM: protein of unknown function DUF339; KEGG: kva:Kvar_0740 protein of unknown function DUF339 YP_003940415.1 PFAM: protein of unknown function DUF1434; KEGG: kva:Kvar_0741 protein of unknown function DUF1434 YP_003940416.1 KEGG: kva:Kvar_0742 flavodoxin; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase YP_003940417.1 KEGG: cro:ROD_49391 tyrosine recombinase; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein YP_003940418.1 PFAM: Disulphide bond isomerase, DsbC/G-like; KEGG: cro:ROD_49401 thiol:disulfide interchange protein YP_003940419.1 manually curated; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; KEGG: cko:CKO_04254 ssDNA exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1 YP_003940420.1 manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein YP_003940421.1 KEGG: kva:Kvar_0747 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_003940422.1 KEGG: kpu:KP1_4603 putative lipoprotein; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_003940423.1 KEGG: cdl:CDR20291_0455 hypothetical protein YP_003940424.1 KEGG: cdl:CDR20291_0454 hypothetical protein YP_003940425.1 TIGRFAM: amidohydrolase; KEGG: pmr:PMI3232 amidohydrolase/metallopeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003940426.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cko:CKO_04518 DNA-binding transcriptional activator TdcA YP_003940428.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: spe:Spro_0621 short-chain dehydrogenase/reductase SDR YP_003940429.1 PFAM: Molybdenum cofactor biosynthesis protein F; KEGG: spe:Spro_0622 MoaF YP_003940430.1 PFAM: protein of unknown function CsiD; KEGG: cko:CKO_04006 hypothetical protein YP_003940431.1 PFAM: FAD dependent oxidoreductase; KEGG: cko:CKO_04007 hydroxyglutarate oxidase YP_003940432.1 KEGG: cko:CKO_04008 succinate-semialdehyde dehydrogenase I; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase YP_003940433.1 KEGG: set:SEN2637 gamma-aminobutyrate transporter; TIGRFAM: GABA permease; PFAM: amino acid permease-associated region YP_003940434.1 KEGG: kpu:KP1_1099 DNA-binding transcriptional regulator CsiR; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003940435.1 KEGG: pam:PANA_2004 hypothetical protein YP_003940436.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: ent:Ent638_3391 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003940437.1 PFAM: aldo/keto reductase; KEGG: kva:Kvar_0798 aldo/keto reductase YP_003940438.1 PFAM: Spore germination protein; KEGG: cko:CKO_04225 hypothetical protein YP_003940439.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: kpu:KP1_4545 acetyl-CoA acetyltransferase; PFAM: Thiolase-like YP_003940440.1 KEGG: cko:CKO_04220 5-keto-4-deoxyuronate isomerase; PFAM: KduI/IolB isomerase YP_003940441.1 KEGG: cko:CKO_04219 2-deoxy-D-gluconate 3-dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR YP_003940442.1 KEGG: cro:ROD_28841 putative Asp/Glu/hydantoin racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003940443.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpu:KP1_4527 DNA-binding transcriptional regulator LysR YP_003940444.1 KEGG: lysA; diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_003940445.1 KEGG: kpu:KP1_4525 putative transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003940446.1 PFAM: GCN5-related N-acetyltransferase; KEGG: kpu:KP1_4520 putative acyltransferase YP_003940447.1 KEGG: cko:CKO_04211 DNA-binding transcriptional regulator GalR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003940448.1 KEGG: enc:ECL_04157 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003940449.1 PFAM: major facilitator superfamily MFS_1; KEGG: ent:Ent638_3276 lysophospholipid transporter LplT YP_003940450.1 PFAM: aldo/keto reductase; KEGG: sdy:SDY_3051 putative aldo-keto reductase YP_003940451.1 PFAM: protein of unknown function DUF903; KEGG: kva:Kvar_0828 protein of unknown function DUF903 YP_003940452.1 PFAM: Integral membrane protein TerC; KEGG: kpu:KP1_4513 putative integral membrane transport protein YP_003940453.1 KEGG: enc:ECL_04153 DNA mismatch repair protein; TIGRFAM: DNA mismatch repair endonuclease mutH; PFAM: DNA mismatch repair protein MutH, conserved region YP_003940454.1 KEGG: cro:ROD_28731 hypothetical protein YP_003940456.1 PFAM: NUDIX hydrolase; KEGG: ent:Ent638_3272 dinucleoside polyphosphate hydrolase YP_003940457.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; GAF domain protein; PEP-utilising protein mobile region; KEGG: cro:ROD_28711 phosphoenolpyruvate-protein phosphotransferase (PTS system, enzyme I); SMART: GAF domain protein YP_003940458.1 KEGG: kva:Kvar_0833 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase YP_003940459.1 TIGRFAM: thymidylate synthase; KEGG: cko:CKO_04194 thymidylate synthase; PFAM: thymidylate synthase YP_003940460.1 KEGG: kpe:KPK_0880 hypothetical protein YP_003940461.1 KEGG: kpe:KPK_0881 hypothetical protein YP_003940462.1 PFAM: Protein of unknown function DUF2509; KEGG: kva:Kvar_0837 protein of unknown function DUF2509 YP_003940463.1 KEGG: ent:Ent638_3266 hypothetical protein YP_003940464.1 KEGG: kva:Kvar_0839 exodeoxyribonuclease V, gamma subunit; TIGRFAM: exodeoxyribonuclease V, gamma subunit YP_003940465.1 KEGG: cko:CKO_04186 hypothetical protein; PFAM: peptidase M16 domain protein YP_003940466.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; KEGG: kpu:KP1_4498 exonuclease V subunit beta; PFAM: UvrD/REP helicase YP_003940467.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: kpe:KPK_0887 exonuclease V subunit alpha; SMART: AAA ATPase YP_003940468.1 KEGG: enc:ECL_04141 N-acetylglutamate synthase; TIGRFAM: amino-acid N-acetyltransferase; PFAM: aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase YP_003940469.1 KEGG: cko:CKO_04182 hypothetical protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003940470.1 PFAM: MltA domain protein; 3D domain-containing protein; KEGG: kva:Kvar_0889 MltA domain protein YP_003940471.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: kpe:KPK_0954 ThiF family protein YP_003940472.1 KEGG: cko:CKO_04175 hypothetical protein; TIGRFAM: cysteine desulfurase, sulfur acceptor subunit CsdE; PFAM: Fe-S metabolism associated SufE YP_003940473.1 PFAM: aminotransferase class V; KEGG: enc:ECL_04136 cysteine sulfinate desulfinase YP_003940474.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kva:Kvar_0894 transcriptional regulator, LysR family YP_003940475.1 PFAM: protein of unknown function DUF423; KEGG: cko:CKO_04170 hypothetical protein YP_003940476.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: kva:Kvar_0896 ribosomal RNA methyltransferase RrmJ/FtsJ YP_003940477.1 KEGG: enc:ECL_04131 exonuclease IX; PFAM: 5'-3' exonuclease, SAM-fold domain; 5'-3' exonuclease, N-terminal resolvase-like domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2 YP_003940478.1 TIGRFAM: L-serine dehydratase 1; KEGG: ent:Ent638_3250 L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_003940479.1 TIGRFAM: serine transporter; KEGG: enc:ECL_04129 serine transporter YP_003940480.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: sbo:SBO_2676 hypothetical protein YP_003940481.1 TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: kva:Kvar_0918 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase YP_003940482.1 PFAM: Syd family protein; KEGG: kva:Kvar_0919 Syd family protein YP_003940483.1 PFAM: protein of unknown function DUF446; KEGG: kpu:KP1_4407 hypothetical protein YP_003940484.1 PFAM: pseudouridine synthase; KEGG: cko:CKO_04146 tRNA pseudouridine synthase C YP_003940485.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: kpu:KP1_4405 flavodoxin YP_003940486.1 KEGG: sew:SeSA_A3117 hybrid sensory histidine kinase BarA; PFAM: Protein of unknown function DUF2222; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; Hpt domain protein YP_003940487.1 KEGG: kva:Kvar_0928 RNA methyltransferase, TrmA family; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; Methyltransferase type 11 YP_003940488.1 TIGRFAM: RelA/SpoT family protein; KEGG: kva:Kvar_0929 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; TGS domain-containing protein; amino acid-binding ACT domain protein YP_003940489.1 KEGG: kpu:KP1_4397 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase YP_003940490.1 TIGRFAM: CTP synthase; KEGG: kpu:KP1_4396 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I YP_003940491.1 TIGRFAM: enolase; KEGG: esa:ESA_00523 phosphopyruvate hydratase; PFAM: Enolase-like YP_003940492.1 PFAM: Male sterility domain; KEGG: enc:ECL_04112 hemolysin F YP_003940493.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: enc:ECL_04111 putative transcriptional regulator YP_003940494.1 KEGG: ent:Ent638_3231 PTS system, glucose-like IIB subunint; TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003940495.1 KEGG: ent:Ent638_3230 N-acetylmannosamine-6-phosphate 2-epimerase; PFAM: N-acetylmannosamine-6-phosphate epimerase YP_003940496.1 PFAM: Radical SAM domain protein; KEGG: kva:Kvar_0934 radical SAM domain protein YP_003940497.1 TIGRFAM: 6-pyruvoyl tetrahydropterin synthase; KEGG: kpu:KP1_4390 putative 6-pyruvoyl tetrahydrobiopterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_003940498.1 KEGG: enc:ECL_04106 sulfite reductase (NADPH) hemoprotein, alpha-component; TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: FAD-binding domain protein; flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein YP_003940499.1 KEGG: spq:SPAB_03656 sulfite reductase subunit beta; TIGRFAM: sulfite reductase (NADPH) hemoprotein, beta-component; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein YP_003940500.1 KEGG: enc:ECL_04104 phosphoadenosine phosphosulfate reductase; TIGRFAM: phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase YP_003940501.1 PFAM: Hok/gef cell toxic protein; KEGG: sbc:SbBS512_E3114 hok/gef family protein YP_003940502.1 PFAM: peptidase M28; KEGG: cko:CKO_04114 alkaline phosphatase isozyme conversion aminopeptidase YP_003940503.1 manually curated; TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; KEGG: kpu:KP1_4385 siroheme synthetase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Sirohaem synthase, dimerisation domain YP_003940504.1 KEGG: enc:ECL_04101 sulfate adenylyltransferase subunit 2; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase YP_003940505.1 TIGRFAM: sulfate adenylyltransferase, large subunit; KEGG: kpn:KPN_03113 sulfate adenylyltransferase subunit 1; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_003940506.1 TIGRFAM: adenylylsulfate kinase; KEGG: kva:Kvar_0953 adenylylsulfate kinase; PFAM: adenylylsulfate kinase YP_003940507.1 KEGG: kpu:KP1_4381 hypothetical protein YP_003940508.1 PFAM: Septum formation initiator; KEGG: enc:ECL_04096 cell division protein FtsB YP_003940509.1 KEGG: kpu:KP1_4379 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_003940510.1 KEGG: enc:ECL_04094 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_003940511.1 PFAM: tRNA pseudouridine synthase D TruD; KEGG: kva:Kvar_0958 tRNA pseudouridine synthase D TruD YP_003940512.1 KEGG: kva:Kvar_0959 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_003940513.1 TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: enc:ECL_04091 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_003940514.1 manually curated; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; KEGG: kpu:KP1_4374 lipoprotein NlpD; SMART: Peptidoglycan-binding LysM YP_003940515.1 KEGG: ctu:Ctu_33130 RNA polymerase sigma factor RpoS; TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein YP_003940516.1 KEGG: pam:PANA_3040 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003940517.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; KEGG: seg:SG2812 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_003940518.1 KEGG: ctu:Ctu_1p00850 hypothetical protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003940519.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: enc:ECL_02201 putative fatty acid transport system, membrane protein YP_003940520.1 KEGG: ebi:EbC_21190 NapD-like protein YP_003940521.1 PFAM: Radical SAM domain protein; KEGG: ebi:EbC_21260 radical SAM domain protein YP_003940522.1 PFAM: sulfatase; KEGG: met:M446_6751 sulfatase YP_003940523.1 PFAM: acyltransferase 3; KEGG: swi:Swit_4615 acyltransferase 3 YP_003940524.1 KEGG: bav:BAV2626 cellulose biosynthesis protein YP_003940525.1 KEGG: eok:G2583_0452 cyanate transport; TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1 YP_003940526.1 TIGRFAM: cyanate lyase; KEGG: eok:G2583_0451 cyanate hydratase; PFAM: Cyanate lyase domain protein YP_003940527.1 KEGG: pen:PSEEN3600 carbonic anhydrase; PFAM: carbonic anhydrase YP_003940528.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pen:PSEEN3601 DNA-binding transcriptional regulator CynR YP_003940529.1 PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: kpu:KP1_4319 hypothetical protein YP_003940530.1 KEGG: enc:ECL_04076 hypothetical protein YP_003940531.1 PFAM: TOBE domain-containing protein; KEGG: cko:CKO_04088 hypothetical protein YP_003940532.1 KEGG: kpu:KP1_4336 formate hydrogen-lyase transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; GAF domain protein YP_003940533.1 KEGG: ecm:EcSMS35_2855 hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003940534.1 KEGG: cko:CKO_04085 hypothetical protein; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein YP_003940535.1 KEGG: kpu:KP1_4333 hydrogenase assembly chaperone; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC) YP_003940536.1 KEGG: cro:ROD_30841 hydrogenase isoenzymes nickel incorporation protein; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K YP_003940537.1 KEGG: cko:CKO_04082 hydrogenase nickel incorporation protein; TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA YP_003940538.1 KEGG: cro:ROD_30861 formate hydrogenlyase regulatory protein YP_003940539.1 KEGG: enc:ECL_04063 formate hydrogenlyase subunit 2 YP_003940540.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: cko:CKO_04078 formate hydrogenlyase subunit 3 YP_003940541.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: stm:STM2850 hydrogenase 3 membrane subunit YP_003940542.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; nickel-dependent hydrogenase large subunit; NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: kva:Kvar_1008 NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_003940543.1 KEGG: ses:SARI_00124 formate hydrogenlyase complex iron-sulfur subunit YP_003940544.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: kpu:KP1_4322 hydrogenase 3 small subunit YP_003940545.1 PFAM: formate hydrogenlyase maturation HycH; KEGG: cko:CKO_04073 hypothetical protein YP_003940546.1 KEGG: sec:SC2778 hydrogenase 3 maturation protease; TIGRFAM: hydrogenase maturation protease HycI; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein YP_003940547.1 PFAM: glycoside hydrolase family 1; KEGG: cko:CKO_04071 cryptic 6-phospho-beta-glucosidase YP_003940548.1 TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; KEGG: enc:ECL_04054 cellobiose/arbutin/salicin-specific PTS system components IIBC; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003940549.1 KEGG: kpu:KP1_4316 ascBF operon repressor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003940550.1 KEGG: sed:SeD_A3152 electron transport protein HydN YP_003940551.1 KEGG: kpn:KPN_03048 hydrogenase maturation protein; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase YP_003940552.1 KEGG: kpn:KPN_03047 putative high-affinity nickel-transporter; TIGRFAM: high-affinity nickel-transporter; PFAM: high-affinity nickel-transporter YP_003940553.1 PFAM: DSBA oxidoreductase; KEGG: cko:CKO_03154 periplasmic protein disulfide isomerase I YP_003940554.1 PFAM: LmbE family protein; KEGG: ecr:ECIAI1_0363 hypothetical protein YP_003940555.1 KEGG: ebw:BWG_0250 putative glucosyltransferase; manually curated; PFAM: glycosyl transferase family 2 YP_003940556.1 manually curated; KEGG: ecz:ECS88_0359 putative transferase YP_003940557.1 KEGG: ecp:ECP_2001 hypothetical protein YP_003940558.1 KEGG: seh:SeHA_C3064 transcriptional regulator HilD; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003940559.1 PFAM: Lytic transglycosylase catalytic; KEGG: kpn:KPN_pKPN4p07123 putative lytic transglycosylase YP_003940560.1 PFAM: Toxin-coregulated pilus subunit TcpA; KEGG: cro:ROD_46461 putative type IV pilin YP_003940561.1 KEGG: cro:ROD_46471 putative type IV pilus biogenesis protein YP_003940562.1 KEGG: cro:ROD_46481 putative type IV pilus biogenesis protein YP_003940563.1 KEGG: cro:ROD_46491 putative type IV pilus biogenesis protein YP_003940564.1 KEGG: cro:ROD_46501 putative type IV pilus biogenesis protein YP_003940565.1 KEGG: cro:ROD_46511 putative type IV pilus biogenesis protein YP_003940566.1 KEGG: cro:ROD_46521 putative type IV pilus biogenesis protein YP_003940567.1 PFAM: type II secretion system protein E; KEGG: cro:ROD_46531 putative type IV pilus biogenesis protein CfcH YP_003940568.1 KEGG: cro:ROD_46541 putative type IV pilus biogenesis protein; manually curated; PFAM: Type II secretion system F domain YP_003940569.1 KEGG: fgr:FG10658.1 hypothetical protein YP_003940570.1 KEGG: yen:YE3574 type 4 prepilin-like proteins leader peptide processing enzyme; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV YP_003940571.1 manually curated; PFAM: EAL domain protein; regulatory protein LuxR; KEGG: aha:AHA_2089 cyclic diguanylate phosphodiesterase domain-containing protein; SMART: EAL domain protein; regulatory protein LuxR YP_003940572.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: kpu:KP1_4312 nitric oxide reductase YP_003940573.1 PFAM: flavodoxin/nitric oxide synthase; Rubredoxin-type Fe(Cys)4 protein; KEGG: cko:CKO_04064 anaerobic nitric oxide reductase flavorubredoxin YP_003940574.1 KEGG: kva:Kvar_1026 sigma 54 interacting domain protein; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; SMART: GAF domain protein; AAA ATPase YP_003940575.1 TIGRFAM: KpsF/GutQ family protein; KEGG: kpu:KP1_4308 D-arabinose 5-phosphate isomerase; PFAM: sugar isomerase (SIS); CBS domain containing protein YP_003940576.1 KEGG: eok:G2583_3355 glucitol operon repressor; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003940577.1 PFAM: Glucitol operon activator; KEGG: cko:CKO_04060 DNA-binding transcriptional activator GutM YP_003940578.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cro:ROD_31091 sorbitol-6-phosphate 2-dehydrogenase (glucitol-6-phosphate dehydrogenase) YP_003940579.1 PFAM: PTS system glucitol/sorbitol-specific IIA component; KEGG: kpu:KP1_4303 PTS system glucitol/sorbitol-specific transporter subunit IIA YP_003940580.1 TIGRFAM: PTS system, glucitol/sorbitol-specific, IIBC subunit; KEGG: cro:ROD_31111 glucitol/sorbitol-specific PTS system EIIB component; PFAM: Sorbitol phosphotransferase protein II domain-containing protein YP_003940581.1 KEGG: ses:SARI_00140 hypothetical protein; TIGRFAM: PTS system, glucitol/sorbitol-specific, IIC subunit; PFAM: PTS system protein II sorbitol-specific factor YP_003940582.1 TIGRFAM: lytic murein transglycosylase B; KEGG: kva:Kvar_1035 lytic murein transglycosylase B YP_003940583.1 PFAM: CinA domain protein; KEGG: ssn:SSON_2844 competence damage-inducible protein A YP_003940584.1 TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: kva:Kvar_1041 RecA protein; SMART: AAA ATPase YP_003940585.1 PFAM: regulatory protein RecX; KEGG: kva:Kvar_1042 regulatory protein RecX YP_003940586.1 KEGG: cko:CKO_04048 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1 YP_003940587.1 KEGG: cro:ROD_31181 carbon storage regulator; TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator YP_003940588.1 KEGG: kva:Kvar_1046 transport-associated; PFAM: transport-associated; SMART: Transport-associated and nodulation region YP_003940589.1 KEGG: kva:Kvar_1047 beta-phosphoglucomutase family hydrolase; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003940590.1 KEGG: kva:Kvar_1048 hypothetical protein YP_003940591.1 KEGG: set:SEN2663 glutamate--cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase YP_003940592.1 KEGG: cro:ROD_31241 S-ribosylhomocysteinase; PFAM: LuxS protein YP_003940593.1 KEGG: enc:ECL_04023 EmrB/QacA family drug resistance transporter; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1 YP_003940594.1 KEGG: enc:ECL_04022 efflux pump membrane protein; TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein YP_003940595.1 KEGG: enc:ECL_04021 transcriptional repressor MprA; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003940596.1 PFAM: major facilitator superfamily MFS_1; KEGG: cko:CKO_04030 hypothetical protein YP_003940597.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cko:CKO_04029 glycine betaine transporter periplasmic subunit YP_003940598.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_2823 glycine betaine transporter membrane protein YP_003940599.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; KEGG: cro:ROD_31311 glycine betaine/L-proline ABC transporter, ATP-binding protein; SMART: AAA ATPase YP_003940600.1 KEGG: enc:ECL_04016 ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase YP_003940601.1 KEGG: cro:ROD_31331 ribonucleoside-diphosphate reductase 2 alpha chain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase domain protein; Ribonucleotide reductase large subunit domain protein YP_003940602.1 KEGG: see:SNSL254_A3006 ribonucleotide reductase stimulatory protein; TIGRFAM: NrdI protein; PFAM: NrdI family protein YP_003940603.1 KEGG: sbc:SbBS512_E3206 glutaredoxin-like protein; TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin YP_003940604.1 KEGG: cko:CKO_04021 hypothetical protein; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase YP_003940605.1 KEGG: cko:CKO_04020 hypothetical protein; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH YP_003940606.1 PFAM: Protein of unknown function DUF2002; KEGG: kva:Kvar_1068 protein of unknown function DUF2002 YP_003940607.1 PFAM: protein of unknown function DUF1144; KEGG: ent:Ent638_3150 hypothetical protein YP_003940608.1 KEGG: efe:EFER_0403 DNA binding protein, nucleoid-associated; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS YP_003940609.1 PFAM: protein of unknown function UPF0057; KEGG: kva:Kvar_2856 protein of unknown function UPF0057 YP_003940610.1 KEGG: cko:CKO_02833 hypothetical protein; TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA) YP_003940611.1 KEGG: ses:SARI_01409 acid-resistance protein YP_003940612.1 KEGG: kva:Kvar_0770 putative acyltransferase domain protein YP_003940613.1 KEGG: kpn:KPN_03296 hypothetical protein YP_003940614.1 PFAM: MgtC/SapB transporter; KEGG: ddc:Dd586_2572 MgtC/SapB transporter YP_003940615.1 TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: ses:SARI_03870 hypothetical protein; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase YP_003940616.1 KEGG: cko:CKO_04367 DNA-binding transcriptional activator EvgA; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003940617.1 KEGG: cko:CKO_04368 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; extracellular solute-binding protein family 3; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; extracellular solute-binding protein family 3 YP_003940618.1 KEGG: cko:CKO_04369 hypothetical protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003940619.1 PFAM: Fimbrial protein domain-containing protein; KEGG: cko:CKO_04370 hypothetical protein YP_003940620.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: cko:CKO_04371 hypothetical protein YP_003940621.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: cko:CKO_04372 hypothetical protein YP_003940622.1 PFAM: Fimbrial protein domain-containing protein; KEGG: cko:CKO_04373 hypothetical protein YP_003940623.1 PFAM: EAL domain protein; KEGG: cko:CKO_02620 hypothetical protein YP_003940624.1 KEGG: tva:TVAG_284520 hypothetical protein YP_003940625.1 PFAM: transposase mutator type; KEGG: ypb:YPTS_4272 transposase mutator type YP_003940626.1 KEGG: ect:ECIAI39_2452 hypothetical protein; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like YP_003940627.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ect:ECIAI39_2453 cystathionine gamma-synthase (CGS) (O-succinylhomoserine (thiol)-lyase) YP_003940628.1 KEGG: kpn:KPN_02950 putative cytoplasmic protein YP_003940629.1 manually curated; PFAM: helix-turn-helix domain protein; KEGG: dze:Dd1591_2573 transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein YP_003940630.1 manually curated; PFAM: helix-turn-helix domain protein; KEGG: dze:Dd1591_2573 transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein YP_003940631.1 PFAM: thymidylate synthase; KEGG: bxe:Bxe_A0214 thymidylate synthase YP_003940632.1 KEGG: bxe:Bxe_A0213 hypothetical protein YP_003940633.1 PFAM: protein of unknown function DUF955; KEGG: bxe:Bxe_A0212 hypothetical protein YP_003940634.1 manually curated; KEGG: nhl:Nhal_0750 killer suppression protein HigA, putative YP_003940635.1 KEGG: lsp:Bsph_4745 hypothetical protein YP_003940636.1 KEGG: pau:PA14_15600 hypothetical protein YP_003940637.1 SMART: DEAD-like helicase; KEGG: pau:PA14_15590 hypothetical protein YP_003940638.1 KEGG: ajs:Ajs_2530 putative DNA methylase YP_003940639.1 KEGG: bcj:BCAM1952 transposase; manually curated; PFAM: Integrase catalytic region YP_003940640.1 PFAM: transposase IS3/IS911 family protein; KEGG: ctu:Ctu_29790 insertion element ISR1 uncharacterized 10 kDa protein A3 YP_003940641.1 KEGG: ddc:Dd586_2409 hypothetical protein YP_003940642.1 KEGG: pin:Ping_0981 hypothetical protein YP_003940643.1 KEGG: xcv:XCVd0020 hypothetical protein YP_003940644.1 KEGG: sbn:Sbal195_1863 hypothetical protein YP_003940645.1 manually curated; KEGG: dps:DP2998 hypothetical protein YP_003940646.1 KEGG: shm:Shewmr7_3900 hypothetical protein YP_003940647.1 KEGG: shn:Shewana3_2726 hypothetical protein YP_003940648.1 KEGG: seg:SG0293 hypothetical protein YP_003940649.1 KEGG: seg:SG0292 hypothetical protein YP_003940650.1 KEGG: ebw:BWG_2381 CP4-57 prophage; DNA-binding transcriptional activator; manually curated; PFAM: Prophage CP4-57 regulatory YP_003940651.1 manually curated; KEGG: ebw:BWG_2380 CP4-57 prophage; hypothetical protein YP_003940652.1 PFAM: integrase family protein; KEGG: eck:EC55989_2909 integrase YP_003940653.1 KEGG: cro:ROD_25691 SsrA small binding protein B; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein YP_003940654.1 PFAM: cyclase/dehydrase; KEGG: ent:Ent638_3099 hypothetical protein YP_003940655.1 PFAM: protein of unknown function UPF0125; KEGG: kva:Kvar_1126 protein of unknown function UPF0125 YP_003940656.1 PFAM: SmpA/OmlA domain-containing protein; KEGG: kva:Kvar_1127 SmpA/OmlA domain protein YP_003940657.1 KEGG: kpu:KP1_4194 recombination and repair protein; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein YP_003940658.1 PFAM: ATP-NAD/AcoX kinase; KEGG: ent:Ent638_3095 inorganic polyphosphate/ATP-NAD kinase YP_003940659.1 KEGG: enc:ECL_03947 hypothetical protein YP_003940660.1 PFAM: GrpE protein; KEGG: sdy:SDY_2787 heat shock protein GrpE YP_003940661.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: kpn:KPN_02935 hypothetical protein YP_003940662.1 PFAM: cytochrome c assembly protein; KEGG: cko:CKO_03934 hypothetical protein YP_003940663.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; KEGG: enc:ECL_03943 signal recognition particle protein; SMART: AAA ATPase YP_003940664.1 KEGG: kva:Kvar_1134 ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16 YP_003940665.1 KEGG: kva:Kvar_1135 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein YP_003940666.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: sec:SC2675 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_003940667.1 KEGG: ctu:Ctu_31930 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19 YP_003940668.1 PFAM: transcriptional activator Ogr/delta; KEGG: ecg:E2348C_2893 predicted DNA-binding transcriptional regulator YP_003940669.1 KEGG: kpn:KPN_04858 putative prophage tail protein YP_003940670.1 PFAM: P2 GpU family protein; KEGG: ecg:E2348C_2891 predicted tail fiber protein YP_003940671.1 KEGG: ecv:APECO1_1179 phage related tail protein YP_003940672.1 KEGG: kpn:KPN_04861 putative prophage tail protein; manually curated; PFAM: P2 GpE family protein YP_003940673.1 PFAM: tail E family protein; KEGG: ecz:ECS88_2189 tail protein E (GpE) YP_003940674.1 KEGG: ecm:EcSMS35_4346 phage major tail tube protein FII; TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein YP_003940675.1 KEGG: ecq:ECED1_2439 major tail sheath protein (protein fi) YP_003940676.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: ecg:E2348C_2886 predicted DNA-invertase YP_003940677.1 KEGG: cro:ROD_09041 putative phage tail fibre protein; manually curated; PFAM: Tail Collar domain protein YP_003940678.1 PFAM: tail assembly chaperone gp38; KEGG: ent:Ent638_3483 phage tail assembly chaperone GP38 YP_003940679.1 KEGG: ypy:YPK_3110 tail assembly chaperone GP38; manually curated; PFAM: tail assembly chaperone gp38 YP_003940680.1 KEGG: pam:PANA_3406 H YP_003940681.1 TIGRFAM: phage tail protein I; KEGG: ent:Ent638_3485 phage tail protein I YP_003940682.1 PFAM: Baseplate J family protein; KEGG: ent:Ent638_3486 baseplate J family protein YP_003940683.1 PFAM: GPW/gp25 family protein; KEGG: ecz:ECS88_2199 baseplate assembly protein W (gpW) YP_003940684.1 KEGG: ecv:APECO1_4478 phage baseplate protein; manually curated; TIGRFAM: phage baseplate assembly protein V YP_003940685.1 KEGG: etw:ECSP_2856 P2 phage tail completion protein R, GpR YP_003940686.1 manually curated; KEGG: ecm:EcSMS35_4333 phage lysis protein LysC YP_003940687.1 KEGG: ctu:Ctu_32320 protein LysB; manually curated; TIGRFAM: phage lysis regulatory protein, LysB family YP_003940688.1 PFAM: glycoside hydrolase family 24; KEGG: ent:Ent638_3494 glycoside hydrolase family protein YP_003940689.1 KEGG: see:SNSL254_A4371 putative prophage Hp1 family holin YP_003940690.1 PFAM: tail X family protein; KEGG: kpn:KPN_04877 putative prophage tail component protein YP_003940691.1 KEGG: ddc:Dd586_1796 hypothetical protein YP_003940692.1 PFAM: replication gene A; KEGG: ent:Ent638_3505 bacteriophage replication gene A YP_003940693.1 KEGG: kpn:KPN_04888 putative prophage protein; manually curated; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family YP_003940694.1 KEGG: pam:PANA_3420 hypothetical protein YP_003940695.1 KEGG: kpn:KPN_04890 putative prophage protein YP_003940696.1 PFAM: CI repressor; KEGG: spe:Spro_0877 CI repressor YP_003940697.1 KEGG: cko:CKO_03928 hypothetical protein YP_003940698.1 KEGG: esa:ESA_00652 hypothetical protein YP_003940699.1 PFAM: OmpA/MotB domain protein; KEGG: kpu:KP1_4181 putative outer membrane lipoprotein YP_003940700.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: cro:ROD_25541 putative signal transduction protein; SMART: GGDEF domain containing protein YP_003940701.1 KEGG: ent:Ent638_3082 hypothetical protein YP_003940702.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: enc:ECL_03932 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003940703.1 TIGRFAM: chorismate mutase; KEGG: cko:CKO_03920 bifunctional chorismate mutase/prephenate dehydrogenase; PFAM: Chorismate mutase, type II; Prephenate dehydrogenase YP_003940704.1 KEGG: sbc:SbBS512_E2986 bifunctional chorismate mutase/prephenate dehydratase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II YP_003940705.1 KEGG: kva:Kvar_1147 ribosomal subunit interface protein; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA YP_003940706.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: kpu:KP1_4173 outer membrane protein assembly complex subunit YfiO YP_003940707.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: set:SEN2585 23S rRNA pseudouridine synthase D; SMART: RNA-binding S4 domain protein YP_003940708.1 PFAM: protein of unknown function DUF152; KEGG: kva:Kvar_1150 protein of unknown function DUF152 YP_003940709.1 TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: cko:CKO_03914 protein disaggregation chaperone; SMART: AAA ATPase YP_003940710.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); KEGG: kva:Kvar_1153 metabolite/H+ symporter, major facilitator superfamily (MFS) YP_003940711.1 KEGG: kpu:KP1_4166 hypothetical protein YP_003940712.1 KEGG: kva:Kvar_1155 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase YP_003940713.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: kpu:KP1_4164 putative NAD(P)-binding and ATP-binding acyl-CoA synthetase YP_003940714.1 PFAM: DTW domain containing protein; KEGG: cro:ROD_25281 hypothetical protein YP_003940715.1 KEGG: enc:ECL_03918 thioredoxin 2; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein YP_003940716.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: enc:ECL_03917 putative methyltransferase YP_003940717.1 PFAM: transposase IS4 family protein; KEGG: pct:PC1_1038 transposase IS4 family protein YP_003940718.1 KEGG: ung; uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily YP_003940719.1 PFAM: formate C-acetyltransferase glycine radical; KEGG: kva:Kvar_1161 formate C-acetyltransferase glycine radical YP_003940720.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ecm:EcSMS35_2731 neutral amino-acid efflux protein YP_003940721.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sew:SeSA_A2838 LysR substrate binding domain protein YP_003940722.1 KEGG: ses:SARI_00280 ATP-dependent RNA helicase SrmB; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003940723.1 PFAM: methyltransferase small; KEGG: eok:G2583_3157 hypothetical protein YP_003940724.1 KEGG: cko:CKO_00208 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003940725.1 KEGG: cko:CKO_00209 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein YP_003940726.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: enc:ECL_03910 sigma-E factor negative regulatory protein RseA YP_003940727.1 KEGG: enc:ECL_03909 sigma-E factor negative regulatory protein RseB; manually curated; PFAM: MucB/RseB family protein YP_003940728.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: kva:Kvar_1168 positive regulator of sigma E, RseC/MucC YP_003940729.1 KEGG: kva:Kvar_1169 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein YP_003940730.1 KEGG: ent:Ent638_3055 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region YP_003940731.1 SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: kva:Kvar_1171 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein YP_003940732.1 KEGG: set:SEN2560 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein YP_003940733.1 KEGG: enc:ECL_03903 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO YP_003940734.1 TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: efe:EFER_0510 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ YP_003940735.1 KEGG: kpu:KP1_4142 4'-phosphopantetheinyl transferase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase YP_003940736.1 KEGG: kva:Kvar_1176 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_003940737.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: spq:SPAB_00354 putative DNA-binding transcriptional regulator YP_003940738.1 TIGRFAM: HAD superfamily (subfamily IF) hydrolase, YfhB; KEGG: cko:CKO_00223 hypothetical protein YP_003940739.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sbc:SbBS512_E2923 tRNA-specific adenosine deaminase YP_003940740.1 KEGG: cko:CKO_00225 putative transglycosylase; PFAM: Lytic transglycosylase catalytic; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003940741.1 TIGRFAM: phosphoribosylformylglycinamidine synthase; KEGG: eok:G2583_3088 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003940742.1 KEGG: spq:SPAB_00364 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003940743.1 KEGG: enc:ECL_03892 hypothetical protein YP_003940744.1 KEGG: sbc:SbBS512_E2919 sigma-54 dependent response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase YP_003940745.1 PFAM: nitrogen regulatory protein P-II; KEGG: enc:ECL_03890 nitrogen regulatory protein P-II 1 YP_003940746.1 KEGG: kpe:KPK_4091 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region YP_003940747.1 KEGG: kva:Kvar_3879 lysine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein YP_003940748.1 KEGG: kpu:KP1_1409 lysine/cadaverine antiporter; TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region YP_003940749.1 PFAM: transcriptional regulator domain-containing protein; KEGG: kva:Kvar_3881 transcriptional regulator, CadC YP_003940750.1 PFAM: globin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: enc:ECL_03889 nitric oxide dioxygenase YP_003940751.1 KEGG: ent:Ent638_3036 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase YP_003940752.1 PFAM: DoxX family protein; KEGG: enc:ECL_03887 hypothetical protein YP_003940753.1 PFAM: Protein of unknown function DUF2569; KEGG: esa:ESA_03427 hypothetical protein YP_003940754.1 KEGG: cro:ROD_24851 putative carbohydrate kinase; TIGRFAM: FGGY-family pentulose kinase; PFAM: Carbohydrate kinase, FGGY-like YP_003940755.1 PFAM: inner-membrane translocator; KEGG: cro:ROD_24841 putative ABC transporter membrane protein YP_003940756.1 PFAM: inner-membrane translocator; KEGG: cro:ROD_24831 putative ABC transporter membrane protein YP_003940757.1 KEGG: cro:ROD_24821 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003940758.1 KEGG: cro:ROD_24811 ABC transporter, substrate-binding protein YP_003940759.1 PFAM: ROK family protein; KEGG: kpn:KPN_02874 putative NAGC-like transcriptional regulator YP_003940760.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: kpu:KP1_4125 putative transferase YP_003940761.1 TIGRFAM: sugar transporter; KEGG: kpu:KP1_4124 putative general substrate transporter YP_003940762.1 PFAM: Aldose 1-epimerase; KEGG: cko:CKO_00241 hypothetical protein YP_003940763.1 PFAM: major facilitator superfamily MFS_1; KEGG: cro:ROD_24881 putative 3-phenylpropionate permease YP_003940764.1 PFAM: PRD domain protein; KEGG: kpu:KP1_4121 stationary phase inducible protein CsiE YP_003940765.1 PFAM: protein of unknown function DUF1007; KEGG: kpu:KP1_4120 putative ABC-type transport protein YP_003940766.1 PFAM: high-affinity nickel-transporter; KEGG: cko:CKO_00247 hypothetical protein YP_003940767.1 PFAM: inositol monophosphatase; KEGG: kpu:KP1_4117 inositol monophosphatase YP_003940768.1 KEGG: set:SEN2525 putative RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU) YP_003940769.1 KEGG: cko:CKO_00250 DNA-binding transcriptional regulator IscR; TIGRFAM: iron-sulfur cluster assembly transcription factor IscR; transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_003940770.1 KEGG: set:SEN2523 cysteine desulfurase; TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V YP_003940771.1 KEGG: cro:ROD_24731 iron-sulfur cluster assembly protein; TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein YP_003940772.1 KEGG: enc:ECL_03877 iron-sulfur cluster assembly protein; TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein YP_003940773.1 TIGRFAM: co-chaperone Hsc20; PFAM: HSC20 oligomerisation; heat shock protein DnaJ domain protein; KEGG: cko:CKO_00254 co-chaperone HscB; SMART: heat shock protein DnaJ domain protein YP_003940774.1 KEGG: enc:ECL_03875 chaperone protein HscA; TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70 YP_003940775.1 KEGG: ddc:Dd586_3065 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin YP_003940776.1 KEGG: cko:CKO_00257 hypothetical protein; TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528 YP_003940777.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: enc:ECL_03872 aminopeptidase B YP_003940778.1 KEGG: ent:Ent638_3019 enhanced serine sensitivity protein SseB YP_003940779.1 KEGG: kpu:KP1_4103 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003940780.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: kva:Kvar_1208 alpha-2-macroglobulin domain protein YP_003940781.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; manually curated; KEGG: kpu:KP1_4101 penicillin-binding protein 1C; TIGRFAM: penicillin-binding protein 1C YP_003940782.1 PFAM: nucleoside diphosphate kinase; KEGG: sdy:SDY_2714 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_003940783.1 KEGG: sea:SeAg_B2677 ribosomal RNA large subunit methyltransferase N; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein YP_003940784.1 KEGG: cro:ROD_24591 putative regulatory protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003940785.1 KEGG: kpu:KP1_4095 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_003940786.1 TIGRFAM: histidyl-tRNA synthetase; KEGG: ecy:ECSE_2800 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_003940787.1 PFAM: Protein of unknown function DUF2133; KEGG: kva:Kvar_1215 protein of unknown function DUF2133 YP_003940788.1 TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; KEGG: kpn:KPN_02842 outer membrane protein assembly complex subunit YfgL; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_003940789.1 KEGG: kpu:KP1_4091 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related YP_003940790.1 KEGG: ecc:c4824 putative transcriptional regulator YihW; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003940791.1 PFAM: PfkB domain protein; KEGG: hypothetical sugar kinase YihV YP_003940792.1 KEGG: ecz:ECS88_4324 putative oxidoreductase with NAD(P)-binding Rossmann-fold domain, putative 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding YP_003940793.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sbc:SbBS512_E4351 deoxyribose-phosphate aldolase YP_003940794.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: dehydrogenase YP_003940795.1 PFAM: major facilitator superfamily MFS_1; KEGG: eck:EC55989_4356 putative transporter YP_003940796.1 KEGG: shikimate transporter YP_003940797.1 PFAM: Aldose 1-epimerase; KEGG: hypothetical protein YP_003940798.1 KEGG: cko:CKO_00276 hypothetical protein; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region YP_003940799.1 PFAM: oxidoreductase domain protein; KEGG: kpu:KP1_4090 hypothetical protein YP_003940800.1 PFAM: protein of unknown function DUF1407; KEGG: cko:CKO_00277 hypothetical protein YP_003940801.1 KEGG: ent:Ent638_3000 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type YP_003940802.1 SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: kva:Kvar_1221 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein YP_003940803.1 KEGG: enc:ECL_03844 GMP synthase (glutamine-hydrolyzing); TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I YP_003940804.1 KEGG: cko:CKO_00281 hypothetical protein YP_003940805.1 KEGG: cko:CKO_00282 hypothetical protein YP_003940806.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: enc:ECL_03810 RpiR family transcriptional regulator YP_003940807.1 KEGG: enc:ECL_03809 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase YP_003940808.1 PFAM: thiamine pyrophosphate central domain-containing protein; thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: eic:NT01EI_2136 putative malonic semialdehyde oxidative decarboxylase YP_003940809.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cko:CKO_03991 hypothetical protein YP_003940810.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: enc:ECL_03806 ribose transport system substrate-binding protein YP_003940811.1 KEGG: enc:ECL_03805 ribose transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003940812.1 PFAM: inner-membrane translocator; KEGG: enc:ECL_03804 ribose transport system permease protein YP_003940813.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cko:CKO_03987 hypothetical protein YP_003940814.1 PFAM: Protein of unknown function DUF2090; PfkB domain protein; KEGG: enc:ECL_03802 5-dehydro-2-deoxygluconokinase YP_003940815.1 KEGG: cko:CKO_03985 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel YP_003940816.1 KEGG: enc:ECL_03800 5-deoxy-glucuronate isomerase YP_003940817.1 KEGG: enc:ECL_04338 trk system potassium uptake protein TrkG; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter YP_003940818.1 KEGG: cro:ROD_24471 hypothetical protein YP_003940819.1 KEGG: kpe:KPK_1302 cyclic diguanylate phosphodiesterase (EAL) domain protein; PFAM: EAL domain protein; MASE1 domain protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003940820.1 KEGG: kpu:KP1_4079 exopolyphosphatase; PFAM: Ppx/GppA phosphatase YP_003940821.1 KEGG: kva:Kvar_1228 polyphosphate kinase; PFAM: Polyphosphate kinase YP_003940822.1 KEGG: enc:ECL_03792 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein YP_003940823.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: kva:Kvar_1230 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003940824.1 PFAM: glycoside hydrolase family 1; KEGG: enc:ECL_03789 6-phospho-beta-glucosidase YP_003940825.1 KEGG: kva:Kvar_1233 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003940826.1 KEGG: kva:Kvar_1234 uracil-xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_003940827.1 manually curated; TIGRFAM: DnaA regulatory inactivator Hda; KEGG: sdy:SDY_2685 DNA replication initiation factor; PFAM: Chromosomal replication initiator DnaA YP_003940828.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: enc:ECL_03785 leucyl aminopeptidase YP_003940829.1 KEGG: enc:ECL_03784 putative glycosylasparaginase; PFAM: peptidase T2 asparaginase 2 YP_003940830.1 TIGRFAM: PTS system, cellobiose-specific IIC subunit; PTS system, lactose/cellobiose family IIC subunit; KEGG: enc:ECL_03783 PTS system lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system EIIC YP_003940831.1 KEGG: enc:ECL_03782 hypothetical protein YP_003940832.1 KEGG: cko:CKO_00301 hypothetical protein; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related YP_003940833.1 PFAM: peptidase M48 Ste24p; KEGG: kpu:KP1_4068 hypothetical protein YP_003940834.1 PFAM: protein of unknown function UPF0118; KEGG: enc:ECL_03779 hypothetical protein YP_003940835.1 PFAM: sugar diacid recognition domain protein; KEGG: spq:SPAB_00455 hypothetical protein YP_003940836.1 PFAM: Citrate transporter; KEGG: seg:SG2523 putative permease YP_003940837.1 TIGRFAM: glycerate kinase; KEGG: stt:t0367 hypothetical protein; PFAM: glycerate kinase YP_003940838.1 KEGG: cro:ROD_24291 putative peroxiredoxin (bacterioferritin comigratory protein); PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_003940839.1 PFAM: amino acid-binding ACT domain protein; KEGG: cro:ROD_24281 glycine cleavage system transcriptional repressor YP_003940840.1 KEGG: set:SEN2468 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_003940841.1 KEGG: kpn:KPN_02811 lipoprotein YP_003940842.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: cro:ROD_24251 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_003940843.1 PFAM: protein of unknown function zinc metallopeptidase; KEGG: eoj:ECO26_3519 hypothetical protein YP_003940844.1 PFAM: GCN5-related N-acetyltransferase; KEGG: kpn:KPN_02808 putative acyl-CoA N-acyltransferase YP_003940845.1 PFAM: phospholipase/Carboxylesterase; KEGG: cko:CKO_00314 esterase YpfH YP_003940846.1 KEGG: enc:ECL_03770 hypothetical protein YP_003940847.1 KEGG: enc:ECL_03769 succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003940848.1 PFAM: arsenate reductase and related; KEGG: kpu:KP1_4055 hypothetical protein YP_003940849.1 KEGG: kva:Kvar_1252 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_003940850.1 PFAM: NUDIX hydrolase; KEGG: cko:CKO_00326 hypothetical protein YP_003940851.1 PFAM: protein of unknown function DUF1176; KEGG: enc:ECL_03763 hypothetical protein YP_003940852.1 KEGG: enc:ECL_03762 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region YP_003940853.1 KEGG: kva:Kvar_1257 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_003940854.1 PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: cko:CKO_00332 malic enzyme YP_003940855.1 PFAM: microcompartments protein; KEGG: kva:Kvar_1259 microcompartments protein YP_003940856.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: cko:CKO_00334 hypothetical protein YP_003940857.1 PFAM: Ethanolamine utilisation EutQ family protein; KEGG: cko:CKO_00335 hypothetical protein YP_003940858.1 KEGG: cko:CKO_00336 hypothetical protein; PFAM: cobalamin adenosyltransferase YP_003940859.1 KEGG: see:SNSL254_A2659 phosphotransacetylase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_003940860.1 PFAM: microcompartments protein; KEGG: cko:CKO_00338 hypothetical protein YP_003940861.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: set:SEN2444 ethanolamine utilization protein YP_003940862.1 PFAM: Aldehyde Dehydrogenase; KEGG: sea:SeAg_B2608 ethanolamine utilization protein EutE YP_003940863.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: seg:SG2492 putative alcohol dehydrogenase YP_003940864.1 PFAM: Ethanolamine utilisation protein EutH; KEGG: cro:ROD_24001 putative ethanolamine transporter YP_003940865.1 PFAM: Ethanolamine utilisation EutA; KEGG: sea:SeAg_B2604 reactivating factor for ethanolamine ammonia lyase YP_003940866.1 KEGG: cro:ROD_23981 ethanolamine ammonia-lyase heavy chain; PFAM: Ethanolamine ammonia lyase large subunit YP_003940867.1 KEGG: cko:CKO_00346 ethanolamine ammonia-lyase small subunit; PFAM: Ethanolamine ammonia-lyase light chain YP_003940868.1 PFAM: microcompartments protein; KEGG: kva:Kvar_1273 microcompartments protein YP_003940869.1 PFAM: microcompartments protein; KEGG: cko:CKO_00348 hypothetical protein YP_003940870.1 manually curated; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cko:CKO_00349 transcriptional regulator EutR; SMART: Helix-turn-helix, AraC domain YP_003940871.1 KEGG: eok:G2583_2967 coproporphyrinogen III oxidase, aerobic; PFAM: coproporphyrinogen III oxidase YP_003940872.1 KEGG: kva:Kvar_1277 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003940873.1 PFAM: GCN5-related N-acetyltransferase; KEGG: kpu:KP1_4026 putative acetyltransferase YP_003940874.1 KEGG: kpu:KP1_4024 hypothetical protein YP_003940875.1 PFAM: protein of unknown function DUF1131; KEGG: efe:EFER_0740 hypothetical protein YP_003940876.1 KEGG: sbc:SbBS512_E2803 dyp-type peroxidase family protein; TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase YP_003940877.1 PFAM: NUDIX hydrolase; KEGG: ent:Ent638_3123 NUDIX hydrolase YP_003940878.1 KEGG: kpu:KP1_4021 thiosulfate transporter subunit; TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_003940879.1 KEGG: cko:CKO_00366 sulfate/thiosulfate transporter subunit; TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component YP_003940880.1 KEGG: cko:CKO_00367 sulfate/thiosulfate transporter permease subunit; TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component YP_003940881.1 TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: enc:ECL_03750 sulfate transport system ATP-binding protein; SMART: AAA ATPase YP_003940882.1 manually curated; TIGRFAM: cysteine synthase B; cysteine synthase; KEGG: enc:ECL_03749 cysteine synthase B (O-acetylserine sulfhydrolase B); PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003940883.1 PFAM: glutamine amidotransferase class-I; KEGG: set:SEN2418 glutamine amidotransferase YP_003940884.1 KEGG: kpu:KP1_4015 putative regulatory protein; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH YP_003940885.1 KEGG: enc:ECL_03748 pyridoxal kinase; TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_003940886.1 KEGG: cko:CKO_00375 PTS system glucose-specific transporter subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain YP_003940887.1 KEGG: sea:SeAg_B2577 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region YP_003940888.1 KEGG: spe:Spro_3448 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003940889.1 KEGG: enc:ECL_03744 cysteine synthase A; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003940890.1 KEGG: kpe:KPK_1378 putative sulfate transport protein CysZ YP_003940891.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region protein; KEGG: kva:Kvar_1297 cell division protein ZipA; SMART: ZipA FtsZ-binding region protein YP_003940892.1 TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; helix-hairpin-helix motif; BRCT domain protein; KEGG: cko:CKO_00382 NAD-dependent DNA ligase LigA; SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein YP_003940893.1 KEGG: ent:Ent638_2938 hypothetical protein YP_003940894.1 KEGG: kva:Kvar_1300 bile acid:sodium symporter YP_003940895.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpu:KP1_4002 putative LysR-family transcriptional regulator YP_003940896.1 KEGG: cko:CKO_00388 hypothetical protein YP_003940897.1 KEGG: cko:CKO_00396 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_003940898.1 PFAM: protein of unknown function DUF1323; KEGG: kpu:KP1_4000 putative negative regulator YP_003940899.1 PFAM: protein of unknown function DUF1323; KEGG: kva:Kvar_1304 protein of unknown function DUF1323 YP_003940900.1 KEGG: kpn:KPN_02745 hypothetical protein; PFAM: EAL domain protein; MASE1 domain protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003940901.1 KEGG: enc:ECL_03732 nucleoside permease; TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein YP_003940902.1 KEGG: ece:Z3658 manganese transport protein MntH; TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein YP_003940903.1 PFAM: Protein of unknown function DUF2502; KEGG: ecw:EcE24377A_2681 hypothetical protein YP_003940904.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: kpu:KP1_3993 putative pyruvate decarboxylase YP_003940905.1 PFAM: Cl- channel voltage-gated family protein; KEGG: kpu:KP1_3991 hypothetical protein YP_003940906.1 TIGRFAM: glucokinase; KEGG: kpu:KP1_3989 glucokinase; PFAM: Glucokinase YP_003940907.1 KEGG: cko:CKO_00419 hypothetical protein; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_003940908.1 KEGG: ent:Ent638_2919 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003940909.1 PFAM: aminotransferase class I and II; KEGG: enc:ECL_03723 aminotransferase YP_003940910.1 KEGG: efe:EFER_0791 hypothetical protein YP_003940911.1 KEGG: ent:Ent638_2080 hypothetical protein YP_003940912.1 KEGG: kva:Kvar_3850 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003940913.1 PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; KEGG: ddc:Dd586_2844 transposase IS3/IS911 family protein YP_003940915.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ppg:PputGB1_4400 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003940916.1 KEGG: ppg:PputGB1_2814 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003940917.1 PFAM: protein of unknown function DUF1234; KEGG: ppf:Pput_2670 hypothetical protein YP_003940918.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ppg:PputGB1_2807 long-chain-fatty-acid--CoA ligase YP_003940919.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_A2148 zinc-containing alcohol dehydrogenase superfamily protein YP_003940920.1 KEGG: ppg:PputGB1_2819 taurine dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA YP_003940921.1 PFAM: protein of unknown function DUF849; KEGG: ppg:PputGB1_2818 hypothetical protein YP_003940922.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppg:PputGB1_2817 major facilitator transporter YP_003940923.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: avn:Avin_17570 3-oxoacid CoA-transferase, subunit A; PFAM: coenzyme A transferase YP_003940924.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: psa:PST_3219 CoA transferase, subunit B; PFAM: coenzyme A transferase YP_003940925.1 KEGG: cko:CKO_02827 propionyl-CoA synthetase; TIGRFAM: propionate/CoA ligase; PFAM: AMP-dependent synthetase and ligase YP_003940926.1 TIGRFAM: 2-methylcitrate dehydratase; KEGG: ecz:ECS88_0345 2-methylcitrate dehydratase; PFAM: MmgE/PrpD family protein YP_003940927.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: ecl:EcolC_3292 methylcitrate synthase; PFAM: Citrate synthase YP_003940928.1 KEGG: cko:CKO_02830 2-methylisocitrate lyase; TIGRFAM: methylisocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase YP_003940929.1 TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; Propionate catabolism activator domain-containing protein; helix-turn-helix Fis-type; KEGG: cko:CKO_02831 hypothetical protein; SMART: AAA ATPase YP_003940930.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: kpu:KP1_3053 hypothetical protein; SMART: GGDEF domain containing protein YP_003940931.1 KEGG: enc:ECL_02282 hypothetical protein YP_003940932.1 PFAM: transposase IS3/IS911 family protein; KEGG: epy:EpC_28130 transposase, probable fragment YP_003940933.1 PFAM: VacJ family lipoprotein; KEGG: set:SEN2374 VacJ lipoprotein precursor YP_003940934.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: kva:Kvar_1323 membrane protein involved in aromatic hydrocarbon degradation YP_003940935.1 PFAM: Conserved hypothetical protein CHP00743; KEGG: kva:Kvar_1324 hypothetical protein YP_003940936.1 TIGRFAM: acetyl-CoA C-acyltransferase FadI; acetyl-CoA acetyltransferase; KEGG: ctu:Ctu_29630 3-ketoacyl-CoA thiolase; PFAM: Thiolase-like YP_003940937.1 KEGG: ssn:SSON_2397 multifunctional fatty acid oxidation complex subunit alpha; TIGRFAM: fatty acid oxidation complex, alpha subunit FadJ; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein YP_003940938.1 manually curated; TIGRFAM: phosphohistidine phosphatase SixA; KEGG: ent:Ent638_2880 phosphohistidine phosphatase; PFAM: Phosphoglycerate mutase YP_003940939.1 KEGG: enc:ECL_03680 hypothetical protein; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2 YP_003940940.1 KEGG: ent:Ent638_2878 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; modification methylase, HemK family; PFAM: methyltransferase small YP_003940941.1 TIGRFAM: chorismate synthase; KEGG: kpu:KP1_3969 chorismate synthase; PFAM: chorismate synthase YP_003940942.1 PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: kpe:KPK_1421 penicillin-insensitive murein endopeptidase YP_003940943.1 PFAM: protein of unknown function DUF81; KEGG: kpu:KP1_3967 hypothetical protein YP_003940944.1 PFAM: protein of unknown function DUF462; KEGG: kva:Kvar_1333 protein of unknown function DUF462 YP_003940945.1 PFAM: YfcL protein; KEGG: esa:ESA_00891 hypothetical protein YP_003940946.1 KEGG: kpu:KP1_3964 5-methylaminomethyl-2-thiouridine methyltransferase; TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: protein of unknown function DUF752; FAD dependent oxidoreductase YP_003940947.1 PFAM: Beta-ketoacyl synthase; KEGG: kpu:KP1_3963 3-oxoacyl-(acyl carrier protein) synthase I YP_003940948.1 PFAM: major facilitator superfamily MFS_1; KEGG: cko:CKO_00464 hypothetical protein YP_003940949.1 KEGG: ent:Ent638_2870 flagella biosynthesis regulator YP_003940950.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: cko:CKO_00466 hypothetical protein YP_003940951.1 KEGG: enc:ECL_03668 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding YP_003940952.1 KEGG: kva:Kvar_1346 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_003940953.1 PFAM: SNARE associated Golgi protein; KEGG: kpn:KPN_02707 hypothetical protein YP_003940954.1 KEGG: efe:EFER_0847 acetyl-CoA carboxylase subunit beta; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: carboxyl transferase YP_003940955.1 KEGG: enc:ECL_03664 bifunctional folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003940956.1 PFAM: Sporulation domain-containing protein; KEGG: cko:CKO_00472 hypothetical protein YP_003940957.1 PFAM: Colicin V production protein; KEGG: kva:Kvar_1351 colicin V production protein YP_003940958.1 KEGG: cko:CKO_00474 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase YP_003940959.1 KEGG: kva:Kvar_1353 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein YP_003940960.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: enc:ECL_03659 histidine/lysine/arginine/ornithine transport system substrate-binding protein; SMART: extracellular solute-binding protein family 3 YP_003940961.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: kva:Kvar_1355 cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein family 3 YP_003940962.1 KEGG: kpu:KP1_3944 histidine transport system permease component; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003940963.1 KEGG: kva:Kvar_1357 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003940964.1 KEGG: kpu:KP1_3942 histidine/lysine/arginine/ornithine transporter subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003940965.1 PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; KEGG: cko:CKO_00483 hypothetical protein YP_003940966.1 PFAM: dihydroneopterin aldolase; KEGG: kva:Kvar_1361 dihydroneopterin aldolase YP_003940967.1 PFAM: Glutathione S-transferase domain; KEGG: ses:SARI_00550 hypothetical protein YP_003940968.1 PFAM: Glutathione S-transferase domain; KEGG: kva:Kvar_1363 glutathione S-transferase domain protein YP_003940969.1 KEGG: enc:ECL_03649 putative phosphodiesterase; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase YP_003940970.1 PFAM: NUDIX hydrolase; KEGG: kpu:KP1_3935 putative NUDIX hydrolase YP_003940971.1 KEGG: enc:ECL_03647 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003940972.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: spq:SPAB_00629 hypothetical protein YP_003940973.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: set:SEN2325 putative sugar phosphotransferase component II B YP_003940974.1 KEGG: set:SEN2324 PTS system ascorbate-specific transporter subunit IIC YP_003940975.1 PFAM: Transketolase domain-containing protein; KEGG: cko:CKO_00492 hypothetical protein YP_003940976.1 PFAM: Transketolase domain-containing protein; Transketolase central region; KEGG: ent:Ent638_2842 transketolase subunit B YP_003940977.1 KEGG: enc:ECL_03641 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein YP_003940978.1 KEGG: enc:ECL_03640 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase YP_003940979.1 PFAM: protein of unknown function DUF412; KEGG: set:SEN2318 hypothetical protein YP_003940980.1 PFAM: YfbU family protein; KEGG: kpu:KP1_3931 hypothetical protein YP_003940981.1 KEGG: kpu:KP1_3930 putative phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003940982.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: cko:CKO_00503 hypothetical protein YP_003940983.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: enc:ECL_03635 5'-nucleotidase; SMART: metal-dependent phosphohydrolase HD region YP_003940984.1 PFAM: aminotransferase class I and II; KEGG: enc:ECL_03634 putative aminotransferase YP_003940985.1 KEGG: efe:EFER_0881 DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes; manually curated; PFAM: LysR substrate-binding; regulatory protein LysR YP_003940986.1 KEGG: kva:Kvar_1375 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; manually curated; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_003940987.1 TIGRFAM: NADH-quinone oxidoreductase, B subunit; KEGG: kva:Kvar_1376 NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003940988.1 KEGG: kpu:KP1_3920 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; TIGRFAM: NADH dehydrogenase I, D subunit; NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_003940989.1 KEGG: kva:Kvar_1378 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_003940990.1 TIGRFAM: NADH-quinone oxidoreductase, F subunit; KEGG: nuoF; NadH-quinone oxidoreductase subunit F; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_003940991.1 KEGG: enc:ECL_03627 NADH dehydrogenase subunit G; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase YP_003940992.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: kva:Kvar_1381 NADH dehydrogenase (quinone) YP_003940993.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; KEGG: cko:CKO_00515 NADH dehydrogenase subunit I YP_003940994.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: kva:Kvar_1383 NADH dehydrogenase (quinone) YP_003940995.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: enc:ECL_03623 NADH dehydrogenase subunit K YP_003940996.1 KEGG: cko:CKO_00518 NADH dehydrogenase subunit L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein YP_003940997.1 KEGG: enc:ECL_03621 NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003940998.1 KEGG: kpu:KP1_3908 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003940999.1 KEGG: cko:CKO_00521 hypothetical protein; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver YP_003941000.1 TIGRFAM: ribonuclease Z; KEGG: kva:Kvar_1388 ribonuclease Z YP_003941001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: kpu:KP1_3906 putative transferase YP_003941002.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: cko:CKO_00524 hypothetical protein YP_003941003.1 KEGG: eck:EC55989_2513 isochorismate synthase 2; TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like YP_003941004.1 KEGG: cko:CKO_00526 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase YP_003941005.1 KEGG: cko:CKO_00527 acyl-CoA thioester hydrolase YfbB; PFAM: alpha/beta hydrolase fold YP_003941006.1 KEGG: enc:ECL_03612 naphthoate synthase; TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase YP_003941007.1 TIGRFAM: o-succinylbenzoic acid (OSB) synthetase; KEGG: enc:ECL_03611 O-succinylbenzoate synthase; PFAM: Mandelate racemase/muconate lactonizing protein YP_003941008.1 KEGG: enc:ECL_03610 O-succinylbenzoic acid--CoA ligase; TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase YP_003941009.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: set:SEN2632 hypothetical protein YP_003941010.1 KEGG: enc:ECL_03608 putative tricarboxylic transport membrane protein YP_003941011.1 KEGG: set:SEN2630 hypothetical protein YP_003941012.1 KEGG: cko:CKO_04000 hypothetical protein; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003941013.1 KEGG: cro:ROD_31491 putative two-component system sensor kinase; PFAM: Two-component sensor kinase domain-containing protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003941014.1 PFAM: YfaZ family protein; KEGG: kpe:KPK_1495 outer membrane protein, YfaZ YP_003941015.1 KEGG: yen:YE0467 hypothetical protein YP_003941016.1 KEGG: see:SNSL254_A2478 competence damage-inducible protein A; TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain YP_003941017.1 KEGG: set:SEN2274 putative transcriptional regulator; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR YP_003941018.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: cro:ROD_26601 putative MR-MLE-family protein YP_003941019.1 PFAM: major facilitator superfamily MFS_1; KEGG: seh:SeHA_C2530 major facilitator family transporter YP_003941020.1 KEGG: cro:ROD_26581 putative carbon-carbon lyase; PFAM: HpcH/HpaI aldolase YP_003941021.1 KEGG: kva:Kvar_1404 glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein YP_003941022.1 TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; KEGG: sfx:S2457 anaerobic glycerol-3-phosphate dehydrogenase subunit B; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003941023.1 KEGG: kpu:KP1_3882 sn-glycerol-3-phosphate dehydrogenase subunit A; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein YP_003941024.1 KEGG: enc:ECL_03532 sn-glycerol-3-phosphate transporter; TIGRFAM: glycerol-3-phosphate transporter; phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1 YP_003941025.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: enc:ECL_03531 glycerophosphodiester phosphodiesterase YP_003941026.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eok:G2583_2777 putative regulator YP_003941027.1 PFAM: major facilitator superfamily MFS_1; KEGG: stm:STM2280 putative permease YP_003941028.1 PFAM: ferredoxin; KEGG: ent:Ent638_2803 2Fe-2S ferredoxin YfaE YP_003941029.1 KEGG: kva:Kvar_1410 ribonucleotide reductase; PFAM: ribonucleotide reductase YP_003941030.1 KEGG: kpn:KPN_02642 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ATP-cone domain protein YP_003941031.1 TIGRFAM: ubiquinone biosynthesis O-methyltransferase; KEGG: enc:ECL_03524 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11 YP_003941032.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA gyrase, A subunit; KEGG: enc:ECL_03523 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_003941033.1 PFAM: PTS system protein II sorbitol-specific factor; KEGG: kpu:KP1_0608 putative glucitol/sorbitol-specific PTS family enzyme II component YP_003941034.1 PFAM: PTS system glucitol/sorbitol-specific IIA component; KEGG: pam:PANA_0836 SrlB YP_003941035.1 KEGG: kpu:KP1_0605 putative glucitol/sorbitol-specific PTS family enzyme IIBC component; PFAM: Sorbitol phosphotransferase protein II domain-containing protein YP_003941036.1 PFAM: oxidoreductase domain protein; KEGG: seh:SeHA_C2927 putative dehydrogenase YP_003941037.1 PFAM: helix-turn-helix protein RpiR; KEGG: pat:Patl_4164 RpiR family transcriptional regulator YP_003941038.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: cko:CKO_00545 hypothetical protein; PFAM: Thiolase-like YP_003941039.1 PFAM: short chain fatty acid transporter; KEGG: cko:CKO_00546 hypothetical protein YP_003941040.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: cko:CKO_00547 hypothetical protein; PFAM: coenzyme A transferase YP_003941041.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: cko:CKO_00548 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; PFAM: coenzyme A transferase YP_003941042.1 KEGG: cko:CKO_00549 acetoacetate metabolism regulatory protein AtoC; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase YP_003941043.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cko:CKO_00550 sensory histidine kinase AtoS; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003941044.1 KEGG: cko:CKO_00552 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; PFAM: Signal transduction histidine kinase RcsC, alpha-beta loop-like; ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003941045.1 KEGG: efe:EFER_0943 transcriptional regulator RcsB; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver YP_003941046.1 KEGG: cko:CKO_00554 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; PFAM: Hpt domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003941047.1 PFAM: porin Gram-negative type; KEGG: kpn:KPN_01445 outer membrane pore protein N, non-specific YP_003941048.1 PFAM: ApbE family lipoprotein; KEGG: kpe:KPK_1517 thiamine biosynthesis lipoprotein ApbE YP_003941049.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain-containing protein; helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; KEGG: ecc:c2754 ADA regulatory protein; SMART: Helix-turn-helix, AraC domain YP_003941050.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: kpe:KPK_1519 alkylated DNA repair protein AlkB YP_003941051.1 TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; KEGG: kpu:KP1_3864 multidrug transporter membrane component/ATP-binding component; SMART: AAA ATPase YP_003941052.1 KEGG: kva:Kvar_1422 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region YP_003941053.1 TIGRFAM: malate/quinone oxidoreductase; KEGG: kva:Kvar_1424 malate/quinone oxidoreductase; PFAM: Malate:quinone-oxidoreductase YP_003941054.1 PFAM: proteinase inhibitor I11 ecotin; KEGG: cro:ROD_23401 ecotin (serine protease inhibitor) YP_003941055.1 KEGG: yen:YE1871 putative lipoprotein YP_003941056.1 KEGG: ebi:EbC_23540 hypothetical protein YP_003941057.1 KEGG: sbp:Sbal223_2947 major facilitator superfamily MFS_1 YP_003941058.1 PFAM: YadA domain-containing protein; KEGG: ent:Ent638_1867 YadA domain-containing protein YP_003941059.1 PFAM: Oligogalacturonate-specific porin; KEGG: ctu:Ctu_34050 uncharacterized protein YiiY YP_003941060.1 PFAM: sulfatase; KEGG: kpu:KP1_3856 putative phopshatase/sulphatase YP_003941061.1 PFAM: protein of unknown function DUF1414; KEGG: enc:ECL_03508 hypothetical protein YP_003941062.1 PFAM: 37kDa nucleoid-associated protein; KEGG: sed:SeD_A2577 nucleoid-associated protein NdpA YP_003941063.1 PFAM: Ribosomal protein L25-like; KEGG: kpu:KP1_3849 50S ribosomal protein L25 YP_003941064.1 manually curated; PFAM: type III restriction protein res subunit; helicase domain protein; KEGG: kva:Kvar_1443 type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein YP_003941065.1 KEGG: enc:ECL_03502 16S rRNA pseudouridylate synthase A; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003941066.1 KEGG: ent:Ent638_2778 bicyclomycin/multidrug efflux system; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; multidrug/H+ antiporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1 YP_003941067.1 KEGG: kva:Kvar_1446 hypothetical protein YP_003941068.1 KEGG: eum:ECUMN_2517 putative fused oligopeptide transporter subunits of ABC superfamily: ATP-binding components; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003941069.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cko:CKO_00599 hypothetical protein YP_003941070.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cko:CKO_00600 hypothetical protein YP_003941071.1 KEGG: sew:SeSA_A2456 extracellular solute-binding protein; manually curated; PFAM: extracellular solute-binding protein family 5 YP_003941072.1 KEGG: enc:ECL_03495 hypothetical protein; PFAM: EAL domain protein; SMART: EAL domain protein YP_003941073.1 KEGG: kva:Kvar_1452 NLP/P60 protein; manually curated; PFAM: NLP/P60 protein YP_003941074.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: efe:EFER_2262 putative enzyme YP_003941075.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: kpu:KP1_3834 putative mannitol dehydrogenase YP_003941076.1 TIGRFAM: mannonate dehydratase; KEGG: cro:ROD_23021 D-mannonate hydrolase; PFAM: Mannonate dehydratase YP_003941077.1 KEGG: kva:Kvar_1457 elongation factor P-like protein YeiP; TIGRFAM: elongation factor P-like protein YeiP; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW-like domain-containing protein; Elongation factor P YP_003941078.1 PFAM: protein of unknown function UPF0153; KEGG: cro:ROD_22981 hypothetical protein YP_003941079.1 KEGG: ent:Ent638_2764 sugar efflux transporter; TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1 YP_003941080.1 KEGG: cko:CKO_00613 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphoryl transfer system HPr YP_003941081.1 KEGG: kpu:KP1_3828 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_003941082.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; KEGG: enc:ECL_03470 hypothetical protein; PFAM: phosphotransferase system EIIC YP_003941083.1 PFAM: PfkB domain protein; KEGG: cro:ROD_22931 putative pyrimidine kinase YP_003941084.1 PFAM: Indigoidine synthase A family protein; KEGG: cko:CKO_00617 hypothetical protein YP_003941085.1 KEGG: cko:CKO_00619 hypothetical protein; TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein YP_003941086.1 PFAM: PfkB domain protein; KEGG: cko:CKO_00624 hypothetical protein YP_003941087.1 SMART: AP endonuclease family 2; TIGRFAM: apurinic endonuclease Apn1; KEGG: kpu:KP1_3825 endonuclease IV; PFAM: Xylose isomerase domain-containing protein TIM barrel YP_003941088.1 PFAM: Uncharacterised protein family UPF0324; KEGG: ses:SARI_00688 hypothetical protein YP_003941089.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ent:Ent638_2758 putative DNA-binding transcriptional regulator YP_003941090.1 PFAM: amino acid permease-associated region; KEGG: cro:ROD_22851 lysine-specific permease YP_003941091.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: ent:Ent638_2756 colicin I receptor YP_003941092.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: cko:CKO_00636 hypothetical protein; PFAM: esterase YP_003941093.1 KEGG: enc:ECL_03463 hypothetical protein YP_003941094.1 TIGRFAM: GTP cyclohydrolase I; KEGG: cko:CKO_00638 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase YP_003941095.1 PFAM: protein of unknown function DUF418; KEGG: ent:Ent638_2752 hypothetical protein YP_003941096.1 KEGG: kpe:KPK_1577 DNA-binding transcriptional regulator GalS; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003941097.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: kva:Kvar_1475 periplasmic binding protein/LacI transcriptional regulator YP_003941098.1 KEGG: ctu:Ctu_28190 galactose/methyl galaxtoside transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941099.1 PFAM: inner-membrane translocator; KEGG: kva:Kvar_1477 inner-membrane translocator YP_003941100.1 PFAM: protein of unknown function DUF1097; KEGG: sdy:SDY_1001 hypothetical protein YP_003941101.1 TIGRFAM: dihydroorotate dehydrogenase family protein; KEGG: eum:ECUMN_2480 dihydropyrimidine dehydrogenase; PFAM: dihydroorotate oxidase YP_003941102.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: seh:SeHA_C2421 putative oxidoreductase YP_003941103.1 PFAM: protein of unknown function DUF218; KEGG: cko:CKO_00645 hypothetical protein YP_003941104.1 TIGRFAM: cytidine deaminase; KEGG: ent:Ent638_2746 cytidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding domain protein; CMP/dCMP deaminase zinc-binding YP_003941105.1 PFAM: LrgB family protein; KEGG: cko:CKO_00647 hypothetical protein YP_003941106.1 PFAM: LrgA family protein; KEGG: set:SEN2174 hypothetical protein YP_003941107.1 PFAM: dihydrouridine synthase DuS; KEGG: ecq:ECED1_2587 tRNA-dihydrouridine synthase C YP_003941108.1 PFAM: Methyltransferase type 11; KEGG: kva:Kvar_1489 methyltransferase type 11 YP_003941109.1 KEGG: kpn:KPN_02576 multidrug resistance outer membrane protein MdtQ; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_003941110.1 PFAM: SNARE associated Golgi protein; KEGG: efe:EFER_2223 conserved hypothetical protein; putative inner membrane protein YP_003941111.1 PFAM: protein of unknown function DUF1282; KEGG: kva:Kvar_1492 protein of unknown function DUF1282 YP_003941112.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: spq:SPAB_00851 D-alanyl-D-alanine endopeptidase YP_003941113.1 KEGG: enc:ECL_03444 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_003941114.1 KEGG: kva:Kvar_1495 D-lactate dehydrogenase; PFAM: D-lactate dehydrogenase membrane binding ; FAD linked oxidase domain protein YP_003941115.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: enc:ECL_03442 putative periplasmic beta-glucosidase precursor YP_003941116.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ctu:Ctu_28000 putative osmoprotectant uptake system substrate-binding protein OsmF YP_003941117.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ent:Ent638_2729 binding-protein-dependent transport systems inner membrane component YP_003941118.1 KEGG: cko:CKO_00665 hypothetical protein; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase YP_003941119.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: enc:ECL_03438 putative glycine/betaine/choline ABC transporter permease component YP_003941120.1 KEGG: kva:Kvar_1501 hypothetical protein YP_003941121.1 KEGG: cko:CKO_00667 hypothetical protein; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_003941122.1 KEGG: cko:CKO_00668 hypothetical protein; PFAM: 5TM Receptors of the LytS-YhcK type transmembrane region; GAF domain protein; histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: GAF domain protein YP_003941123.1 KEGG: kpu:KP1_3786 putative two-component response-regulatory protein YehT; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_003941124.1 PFAM: protein of unknown function DUF1456; KEGG: kva:Kvar_1504 protein of unknown function DUF1456 YP_003941125.1 KEGG: ent:Ent638_2721 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein YP_003941126.1 PFAM: ATPase-like, ParA/MinD; KEGG: kpu:KP1_3782 putative ATPase YP_003941127.1 KEGG: ses:SARI_03318 hypothetical protein YP_003941128.1 PFAM: GCN5-related N-acetyltransferase; KEGG: kva:Kvar_1507 GCN5-related N-acetyltransferase YP_003941129.1 KEGG: kva:Kvar_1508 hypothetical protein YP_003941130.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpu:KP1_3779 putative LysR-family transcriptional regulator YP_003941131.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: enc:ECL_03426 inorganic anion transporter, sulfate permease (SulP) family YP_003941132.1 KEGG: kpu:KP1_3777 putataive amidohydrolase; PFAM: amidohydrolase YP_003941133.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpu:KP1_3776 putative transcriptional regulator YP_003941134.1 KEGG: kpe:KPK_1615 putative universal stress family protein YP_003941135.1 PFAM: glutamine synthetase catalytic region; KEGG: esa:ESA_04256 hypothetical protein YP_003941136.1 KEGG: ctu:Ctu_40080 hypothetical protein; PFAM: glycosyl transferase family 20 YP_003941137.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: enc:ECL_00731 antibiotic biosynthesis monooxygenase YP_003941138.1 KEGG: ebi:EbC_44610 conserved uncharacterized protein YP_003941139.1 KEGG: pwa:Pecwa_1571 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003941140.1 KEGG: kpu:KP1_3769 hydroxyethylthiazole kinase; PFAM: hydroxyethylthiazole kinase YP_003941141.1 TIGRFAM: phosphomethylpyrimidine kinase; KEGG: kpu:KP1_3768 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_003941142.1 KEGG: cko:CKO_00682 hypothetical protein; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003941143.1 PFAM: PfkB domain protein; KEGG: cko:CKO_00683 hypothetical protein YP_003941144.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: pct:PC1_1000 ADP-ribosylation/crystallin J1 YP_003941145.1 TIGRFAM: nucleoside transporter; KEGG: cko:CKO_00685 hypothetical protein YP_003941146.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sdy:SDY_2270 fructose-bisphosphate aldolase YP_003941147.1 PFAM: Fimbrial protein domain-containing protein; KEGG: ypb:YPTS_0171 fimbrial protein YP_003941148.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: ypb:YPTS_0170 pili assembly chaperone, N-terminal YP_003941149.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pau:PA14_37030 usher YP_003941150.1 PFAM: Fimbrial protein domain-containing protein; KEGG: yen:YE0158 hypothetical protein YP_003941151.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: kpn:KPN_00262 putative fimbriae; chaparone YP_003941152.1 PFAM: transcriptional regulator domain-containing protein; KEGG: sec:SC3680 putative transcriptional regulatory protein YP_003941153.1 KEGG: enc:ECL_00096 hypothetical protein YP_003941154.1 manually curated; KEGG: xne:XNC1_2390 hypothetical protein YP_003941155.1 KEGG: dze:Dd1591_2664 HicB family protein YP_003941156.1 KEGG: ecv:APECO1_4465 hypothetical protein YP_003941157.1 KEGG: see:SNSL254_A4360 hypothetical protein YP_003941158.1 PFAM: peptidase U32; KEGG: eok:G2583_2609 hypothetical protein YP_003941159.1 KEGG: kva:Kvar_1532 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003941160.1 KEGG: ect:ECIAI39_0936 signal transduction histidine-protein kinase BaeS; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003941161.1 PFAM: major facilitator superfamily MFS_1; KEGG: kpu:KP1_3745 multidrug efflux system protein MdtE YP_003941162.1 PFAM: acriflavin resistance protein; KEGG: kva:Kvar_1535 acriflavin resistance protein YP_003941163.1 PFAM: acriflavin resistance protein; KEGG: kva:Kvar_1536 acriflavin resistance protein YP_003941164.1 manually curated; TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: ecv:APECO1_1164 multidrug efflux system subunit MdtA; PFAM: secretion protein HlyD family protein YP_003941165.1 KEGG: ecy:ECSE_2343 putative chaperone YP_003941166.1 PFAM: AlkA domain protein; HhH-GPD family protein; KEGG: cko:CKO_00710 3-methyl-adenine DNA glycosylase II; SMART: HhH-GPD family protein YP_003941167.1 PFAM: major facilitator superfamily MFS_1; KEGG: stt:t2508 putative metabolite transport protein YP_003941168.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; MASE1 domain protein; PAS fold domain protein; PAS fold-3 domain protein; EAL domain protein; KEGG: enc:ECL_03390 putative sensor protein; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; EAL domain protein YP_003941169.1 TIGRFAM: uridine kinase; KEGG: ctu:Ctu_27630 uridine kinase YP_003941170.1 KEGG: cro:ROD_22011 deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase YP_003941171.1 PFAM: AsmA family protein; KEGG: kva:Kvar_1546 AsmA family protein YP_003941172.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: cro:ROD_21981 putative polysaccharide export protein YP_003941173.1 KEGG: enc:ECL_03384 tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_003941174.1 TIGRFAM: capsular exopolysaccharide family; KEGG: enc:ECL_03383 tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein YP_003941175.1 PFAM: glycosyl transferase family 2; KEGG: cro:ROD_21951 putative glycosyl transferase YP_003941176.1 KEGG: esa:ESA_01160 putative colanic acid biosynthesis acetyltransferase WcaB YP_003941177.1 PFAM: glycosyl transferase group 1; KEGG: enc:ECL_03380 putative glycosyl transferase YP_003941178.1 KEGG: cro:ROD_21921 putative colanic acid polymerase YP_003941179.1 PFAM: glycosyl transferase family 2; KEGG: ctu:Ctu_27520 putative glycosyl transferase YP_003941180.1 KEGG: enc:ECL_03377 putative colanic acid biosynthesis acetyltransferase WcaF YP_003941181.1 KEGG: ent:Ent638_2667 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_003941182.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ctu:Ctu_27490 GDP-L-fucose synthetase YP_003941183.1 PFAM: NUDIX hydrolase; KEGG: enc:ECL_03374 colanic acid biosynthesis protein WcaH YP_003941184.1 PFAM: glycosyl transferase group 1; KEGG: ent:Ent638_2664 putative glycosyl transferase YP_003941185.1 PFAM: Nucleotidyl transferase; mannose-6-phosphate isomerase type II; manually curated; KEGG: enc:ECL_03372 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_003941186.1 KEGG: enc:ECL_03371 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase YP_003941187.1 TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: set:SEN2099 putative UDP-glucose lipid carrier transferase; PFAM: sugar transferase YP_003941188.1 PFAM: polysaccharide biosynthesis protein; KEGG: enc:ECL_03369 colanic acid exporter YP_003941189.1 KEGG: cro:ROD_21811 putative colanic acid biosynthesis pyruvyl transferase YP_003941190.1 PFAM: glycosyl transferase group 1; KEGG: ecm:EcSMS35_1018 colanic acid biosynthesis glycosyl transferase WcaL YP_003941191.1 KEGG: cko:CKO_00743 putative colanic acid biosynthesis protein YP_003941192.1 KEGG: set:SEN2094 UTP--glucose-1-phosphate uridylyltransferase subunit GalF; TIGRFAM: regulatory protein GalF; PFAM: Nucleotidyl transferase YP_003941193.1 KEGG: spl:Spea_1398 dTDP-glucose 4,6 dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_003941194.1 KEGG: vsa:VSAL_I0244 glucose-1-phosphate thymidylyltransferase RmlA; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_003941195.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: pin:Ping_3463 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_003941196.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: nve:NEMVE_v1g226019 hypothetical protein; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003941197.1 PFAM: ABC-2 type transporter; KEGG: gym:GYMC10_5817 ABC-2 type transporter YP_003941198.1 KEGG: neu:NE0483 polysaccharide ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941199.1 PFAM: Capsule polysaccharide biosynthesis protein; transferase hexapeptide repeat containing protein; KEGG: bde:BDP_1853 acetyltransferase YP_003941200.1 PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: asa:ASA_1441 glycosyl transferase, group 2 family protein YP_003941201.1 KEGG: asa:ASA_1443 glycosyltransferase YP_003941202.1 PFAM: GtrA family protein; KEGG: pam:PANA_1068 GtrA YP_003941203.1 PFAM: glycosyl transferase family 2; KEGG: sea:SeAg_B0603 bactoprenol glucosyl transferase YP_003941204.1 KEGG: asa:ASA_1444 hypothetical protein YP_003941205.1 PFAM: acyltransferase 3; KEGG: asa:ASA_1445 O-antigen acetylase YP_003941206.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: vvy:VV0341 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003941207.1 KEGG: pin:Ping_3458 glycosyltransferases-like protein YP_003941208.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: cko:CKO_00756 6-phosphogluconate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase domain-containing protein; 6-phosphogluconate dehydrogenase NAD-binding YP_003941209.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: sbo:SBO_0857 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_003941210.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ent:Ent638_2640 NAD-dependent epimerase/dehydratase YP_003941211.1 KEGG: enc:ECL_03346 hypothetical protein; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like; phosphoribosyl-AMP cyclohydrolase YP_003941212.1 KEGG: ssn:SSON_2096 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein YP_003941213.1 KEGG: kva:Kvar_1575 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein YP_003941214.1 KEGG: enc:ECL_03343 imidazole glycerol phosphate synthase; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I YP_003941215.1 TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: cko:CKO_00763 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: imidazoleglycerol-phosphate dehydratase YP_003941216.1 KEGG: ent:Ent638_2633 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II YP_003941217.1 TIGRFAM: histidinol dehydrogenase; KEGG: ecr:ECIAI1_2090 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase YP_003941218.1 TIGRFAM: ATP phosphoribosyltransferase; KEGG: enc:ECL_03339 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain YP_003941219.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: kva:Kvar_1582 6-phosphogluconate dehydrogenase NAD-binding protein YP_003941220.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cko:CKO_00769 hypothetical protein YP_003941221.1 PFAM: amino acid permease-associated region; KEGG: cko:CKO_00771 hypothetical protein YP_003941222.1 SMART: regulatory protein ArsR; KEGG: kpu:KP1_3675 hypothetical protein YP_003941223.1 KEGG: kva:Kvar_1606 translation elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein YP_003941224.1 PFAM: Exonuclease domain protein; Exonuclease RNase T and DNA polymerase III; KEGG: cko:CKO_00773 exonuclease I; SMART: Exonuclease YP_003941225.1 KEGG: enc:ECL_03334 D-alanyl-D-alanine carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein YP_003941226.1 PFAM: transcription activator effector binding; KEGG: enc:ECL_03333 DNA gyrase inhibitor YP_003941227.1 KEGG: kva:Kvar_1612 hypothetical protein YP_003941228.1 PFAM: protein of unknown function DUF496; KEGG: enc:ECL_03331 hypothetical protein YP_003941229.1 PFAM: Citrate carrier protein; KEGG: kpe:KPK_1918 sodium:citrate symporter family protein YP_003941230.1 PFAM: Auxin Efflux Carrier; KEGG: kva:Kvar_1738 auxin efflux carrier YP_003941231.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: kpe:KPK_1916 malate dehydrogenase YP_003941232.1 KEGG: kpe:KPK_2909 fumarate hydratase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region YP_003941233.1 KEGG: enc:ECL_03251 anion transporter; TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter YP_003941234.1 KEGG: kva:Kvar_2810 flavocytochrome c; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; NADH:flavin oxidoreductase/NADH oxidase; FMN-binding domain protein YP_003941235.1 PFAM: ApbE family lipoprotein; KEGG: kpu:KP1_2566 putative thiamine biosynthesis lipoprotein YP_003941236.1 KEGG: kpu:KP1_2567 DNA-binding transcriptional activator DcuR; PFAM: response regulator receiver; SMART: response regulator receiver YP_003941237.1 KEGG: kpn:KPN_01551 sensory histidine kinase DcuS; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein YP_003941238.1 KEGG: kpn:KPN_01553 hypothetical protein YP_003941239.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: mxa:MXAN_5214 hypothetical protein YP_003941240.1 KEGG: enc:ECL_02239 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease YP_003941241.1 KEGG: bcj:BCAM1952 transposase; manually curated; PFAM: Integrase catalytic region YP_003941242.1 PFAM: transposase IS3/IS911 family protein; KEGG: ctu:Ctu_29790 insertion element ISR1 uncharacterized 10 kDa protein A3 YP_003941243.1 KEGG: kva:Kvar_1638 hypothetical protein YP_003941244.1 KEGG: kva:Kvar_1639 hypothetical protein YP_003941245.1 KEGG: cro:ROD_31931 hypothetical protein YP_003941246.1 PFAM: SpoVT/AbrB domain-containing protein; KEGG: ses:SARI_04523 hypothetical protein YP_003941247.1 PFAM: PemK family protein; KEGG: ses:SARI_04525 hypothetical protein YP_003941248.1 KEGG: stm:STM2013 hypothetical protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003941249.1 PFAM: FAD dependent oxidoreductase; KEGG: kpu:KP1_2001 probable oxidoreductase YP_003941250.1 PFAM: Aldehyde Dehydrogenase; KEGG: kpu:KP1_2002 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase YP_003941251.1 KEGG: kva:Kvar_3360 transcriptional regulator, XRE family; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003941252.1 KEGG: kpu:KP1_2005 gamma-glutamyl-gamma-aminobutyrate hydrolase; PFAM: peptidase C26 YP_003941253.1 KEGG: cro:ROD_03561 gamma-glutamylputrescine synthetase; PFAM: glutamine synthetase catalytic region YP_003941254.1 PFAM: amino acid permease-associated region; KEGG: kva:Kvar_3357 amino acid permease-associated region YP_003941255.1 PFAM: porin Gram-negative type; KEGG: spe:Spro_3264 outer membrane porin protein C YP_003941256.1 KEGG: cko:CKO_00847 hypothetical protein; PFAM: peptidase M24; creatinase YP_003941257.1 TIGRFAM: AMP nucleosidase; KEGG: kva:Kvar_1644 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase-like; purine or other phosphorylase family 1 YP_003941258.1 KEGG: rpb:RPB_0074 hypothetical protein YP_003941259.1 KEGG: rpb:RPB_0073 hypothetical protein YP_003941260.1 KEGG: seh:SeHA_C2915 hypothetical protein YP_003941261.1 KEGG: spq:SPAB_01126 hypothetical protein YP_003941262.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: enc:ECL_03324 nitrogen assimilation transcriptional regulator YP_003941263.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kva:Kvar_1659 transcriptional regulator, LysR family YP_003941264.1 PFAM: Protein of unknown function DUF2235; KEGG: etr:ETAE_1214 hypothetical protein YP_003941265.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ses:SARI_00873 hypothetical protein YP_003941266.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cko:CKO_02427 hypothetical protein YP_003941267.1 TIGRFAM: cob(I)alamin adenosyltransferase; KEGG: cko:CKO_02425 cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_003941268.1 KEGG: cko:CKO_02424 hypothetical protein; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region YP_003941269.1 TIGRFAM: Glutaminase, core; KEGG: cps:CPS_4729 glutaminase; PFAM: Glutaminase, core YP_003941270.1 PFAM: sodium:dicarboxylate symporter; KEGG: cko:CKO_02422 hypothetical protein YP_003941271.1 KEGG: cko:CKO_02421 hypothetical protein YP_003941272.1 KEGG: cko:CKO_02420 hypothetical protein YP_003941273.1 TIGRFAM: methylaspartate ammonia-lyase; KEGG: cko:CKO_02419 hypothetical protein; PFAM: methylaspartate ammonia-lyase YP_003941274.1 TIGRFAM: methylaspartate mutase, E subunit; KEGG: cko:CKO_02418 hypothetical protein; PFAM: methylaspartate mutase E subunit YP_003941275.1 KEGG: cko:CKO_02417 hypothetical protein YP_003941276.1 TIGRFAM: methylaspartate mutase, S subunit; KEGG: cko:CKO_02416 methylaspartate mutase subunit S; PFAM: cobalamin B12-binding domain protein YP_003941277.1 TIGRFAM: uroporphyrin-III C-methyltransferase; KEGG: xbo:XBJ1_0853 uroporphyrin-III C-methyltransferase (urogen III methylase) (SumT) (uroporphyrinogen III methylase) (UroM); PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003941278.1 KEGG: xne:XNC1_1146 threonine-phosphate decarboxylase (L-threonine-O-3-phosphate decarboxylase); TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II YP_003941279.1 TIGRFAM: siroheme synthase; KEGG: aha:AHA_4121 siroheme synthase YP_003941280.1 PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: cro:ROD_21441 propanediol utilization protein PduX YP_003941281.1 KEGG: set:SEN2055 propionate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase YP_003941282.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: cko:CKO_00780 hypothetical protein YP_003941283.1 PFAM: microcompartments protein; KEGG: cro:ROD_21411 propanediol utilization protein PduU YP_003941284.1 PFAM: microcompartments protein; KEGG: cro:ROD_21401 propanediol utilization protein PduT YP_003941285.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; KEGG: cko:CKO_00783 hypothetical protein YP_003941286.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cro:ROD_21381 propanediol utilization: propanol dehydrogenase YP_003941287.1 PFAM: Aldehyde Dehydrogenase; KEGG: cro:ROD_21371 propanediol utilization: CoA-dependent propionaldehyde dehydrogenase YP_003941288.1 TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: cro:ROD_21361 propanediol utilization: B12 related; PFAM: cobalamin adenosyltransferase; protein of unknown function DUF336 YP_003941289.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cro:ROD_21351 propanediol utilization: polyhedral bodies YP_003941290.1 KEGG: cko:CKO_00788 hypothetical protein YP_003941291.1 PFAM: Propanediol utilization protein; KEGG: cko:CKO_00789 hypothetical protein YP_003941292.1 PFAM: microcompartments protein; KEGG: cro:ROD_21321 propanediol utilization protein PduK YP_003941293.1 KEGG: cro:ROD_21311 propanediol utilization protein; PFAM: microcompartments protein; SMART: microcompartments protein YP_003941294.1 KEGG: cro:ROD_21301 propanediol utilization: diol dehydratase reactivation YP_003941295.1 PFAM: Diol/glycerol dehydratase reactivating factor large subunit; KEGG: cko:CKO_00793 hypothetical protein YP_003941296.1 PFAM: dehydratase small subunit; KEGG: cro:ROD_21281 propanediol utilization dehydratase, small subunit YP_003941297.1 PFAM: dehydratase medium subunit; KEGG: ses:SARI_00846 hypothetical protein YP_003941298.1 KEGG: cko:CKO_00796 hypothetical protein; PFAM: dehydratase large subunit YP_003941299.1 PFAM: microcompartments protein; KEGG: cko:CKO_00797 hypothetical protein YP_003941300.1 PFAM: microcompartments protein; KEGG: cro:ROD_21241 propanediol utilisation protein PduA YP_003941301.1 KEGG: cko:CKO_00799 hypothetical protein; TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein YP_003941302.1 KEGG: cro:ROD_21211 pdu/cob regulatory protein PocR; PFAM: Transcription regulator,histidine kinase sensor-like; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003941303.1 KEGG: etr:ETAE_2004 cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase YP_003941304.1 KEGG: cko:CKO_00804 cobalamin biosynthesis protein; TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB YP_003941305.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: cko:CKO_00805 cobalt-precorrin-8X methylmutase YP_003941306.1 KEGG: cko:CKO_00806 cobalt-precorrin-6A synthase; TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein YP_003941307.1 KEGG: etr:ETAE_2000 cobalt-precorrin-6Y C(5)-methyltransferase; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003941308.1 KEGG: cko:CKO_00808 cobalt-precorrin-6Y C(15)-methyltransferase; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Methyltransferase type 12 YP_003941309.1 TIGRFAM: precorrin-4 C11-methyltransferase; KEGG: cko:CKO_00809 hypothetical protein; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003941310.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: cko:CKO_00810 cobalamin biosynthesis protein CbiG YP_003941311.1 KEGG: cko:CKO_00811 hypothetical protein; TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003941312.1 KEGG: cko:CKO_00812 cobalt-precorrin-6x reductase; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK YP_003941313.1 KEGG: cko:CKO_00813 hypothetical protein; PFAM: anaerobic cobalt chelatase YP_003941314.1 KEGG: sea:SeAg_B2146 cobalt-precorrin-2 C(20)-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003941315.1 KEGG: cko:CKO_00815 cobalt transport protein CbiM; TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein YP_003941316.1 KEGG: cko:CKO_00816 cobalt transport protein CbiN; TIGRFAM: cobalt transport protein; PFAM: Cobalt transport protein CbiN YP_003941317.1 KEGG: cko:CKO_00817 hypothetical protein; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein YP_003941318.1 TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: cro:ROD_21051 cobalt transport ATP-binding protein; SMART: AAA ATPase YP_003941319.1 KEGG: cko:CKO_00819 cobyric acid synthase; TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase YP_003941320.1 KEGG: etr:ETAE_1988 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; PFAM: cobalbumin biosynthesis protein YP_003941321.1 KEGG: xbo:XBJ1_0834 cobalamin 5'-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS YP_003941322.1 PFAM: Phosphoglycerate mutase; KEGG: pay:PAU_01617 alpha-ribazole-5'-phosphate phosphatase YP_003941323.1 TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: xbo:XBJ1_0833 nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_003941324.1 PFAM: protein of unknown function DUF980; KEGG: kpu:KP1_3564 hypothetical protein YP_003941325.1 KEGG: eck:EC55989_1643 putative lipoprotein/autotransporter domain-containing protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Pertactin; Polymorphic membrane protein Chlamydia YP_003941326.1 KEGG: enc:ECL_00487 putative NADH oxidase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein YP_003941327.1 KEGG: bgl:bglu_2g10710 cytochrome b561/heavy metal translocating P-type ATPase fusion protein; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; Hemerythrin HHE cation binding domain protein YP_003941328.1 PFAM: porin Gram-negative type; KEGG: enc:ECL_03245 porin family protein YP_003941329.1 KEGG: enc:ECL_03244 hypothetical protein YP_003941330.1 KEGG: kpu:KP1_3561 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003941331.1 TIGRFAM: DNA-cytosine methyltransferase; KEGG: kpe:KPK_1851 DNA cytosine methylase; PFAM: C-5 cytosine-specific DNA methylase YP_003941332.1 KEGG: cro:ROD_20391 patch repair protein; TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr YP_003941333.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: kpu:KP1_3558 hypothetical protein YP_003941334.1 PFAM: protein of unknown function DUF808; KEGG: kpe:KPK_1854 hypothetical protein YP_003941335.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sed:SeD_A1253 cellulose synthesis regulatory protein; SMART: GGDEF domain containing protein YP_003941336.1 PFAM: Protein of unknown function DUF2525; KEGG: sdy:SDY_1052 hypothetical protein YP_003941337.1 PFAM: Dextransucrase DSRB; KEGG: efe:EFER_1937 hypothetical protein YP_003941338.1 KEGG: efe:EFER_1936 DNA-binding transcriptional activator, co-regulator with RcsB; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003941339.1 KEGG: cko:CKO_00993 flagellar biosynthesis protein FliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein YP_003941340.1 KEGG: see:SNSL254_A2143 flagellar biosynthesis protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3 YP_003941341.1 KEGG: cko:CKO_00995 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_003941342.1 TIGRFAM: flagellar biosynthetic protein FliO; KEGG: enc:ECL_03229 flagellar biosynthesis protein FliO YP_003941343.1 KEGG: cro:ROD_20261 flagellar motor switch protein FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein YP_003941344.1 KEGG: enc:ECL_03227 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein YP_003941345.1 PFAM: flagellar basal body-associated protein FliL; KEGG: ent:Ent638_2535 flagellar basal body-associated protein FliL YP_003941346.1 PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: cko:CKO_01000 flagellar hook-length control protein YP_003941347.1 KEGG: cko:CKO_01001 flagellar biosynthesis chaperone; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar export FliJ family protein YP_003941348.1 TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: cko:CKO_01002 flagellum-specific ATP synthase; SMART: AAA ATPase YP_003941349.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: seh:SeHA_C2187 flagellar assembly protein H YP_003941350.1 KEGG: enc:ECL_03221 flagellar motor switch protein G; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG YP_003941351.1 KEGG: cko:CKO_01005 flagellar MS-ring protein; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein YP_003941352.1 KEGG: ent:Ent638_2528 flagellar hook-basal body protein FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE YP_003941353.1 PFAM: Tol-Pal system TolA; KEGG: sgl:SG0885 colicin import protein TolA YP_003941354.1 KEGG: enc:ECL_01352 hypothetical protein YP_003941355.1 PFAM: flagellar export chaperone; KEGG: ect:ECIAI39_1129 flagellar biosynthesis protein FliT YP_003941356.1 KEGG: ecg:E2348C_2043 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS YP_003941357.1 PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; flagellin hook IN repeat protein; KEGG: eck:EC55989_2145 flagellar capping protein YP_003941358.1 PFAM: flagellin domain protein; KEGG: ebi:EbC_26380 flagellin YP_003941359.1 KEGG: cro:ROD_19771 flagellar-specific sigma F (sigma 28) factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein YP_003941360.1 PFAM: integrase domain protein SAM domain protein; KEGG: set:SEN1052 flagella biosynthesis protein FliZ YP_003941361.1 KEGG: kpu:KP1_3549 cystine transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor YP_003941362.1 TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; KEGG: enc:ECL_01369 D-cysteine desulfhydrase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003941363.1 KEGG: ent:Ent638_2505 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003941364.1 KEGG: enc:ECL_01371 cystine transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941365.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ebi:EbC_26160 L-carnitine dehydratase/bile acid-inducible protein F YP_003941366.1 KEGG: kpe:KPK_1867 DNA-binding transcriptional activator SdiA; PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR YP_003941367.1 PFAM: Protein of unknown function DUF2594; KEGG: kva:Kvar_1694 protein of unknown function DUF2594 YP_003941368.1 KEGG: enc:ECL_01374 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003941369.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; helix-hairpin-helix motif; KEGG: kpe:KPK_1870 excinuclease ABC subunit C; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1 YP_003941370.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: kpu:KP1_3540 phosphatidylglycerophosphate synthetase; PFAM: CDP-alcohol phosphatidyltransferase YP_003941371.1 KEGG: ypi:YpsIP31758_2250 phage integrase family site specific recombinase; manually curated; PFAM: integrase family protein YP_003941372.1 KEGG: eic:NT01EI_2233 hypothetical protein YP_003941373.1 PFAM: exodeoxyribonuclease VIII; KEGG: ecq:ECED1_1744 exodeoxyribonuclease VIII from bacteriophage origin YP_003941374.1 KEGG: cbr:CBG18138 C. briggsae CBR-CEC-1 protein YP_003941375.1 manually curated; KEGG: stm:STM1011 hypothetical protein YP_003941376.1 KEGG: ddc:Dd586_2207 hypothetical protein YP_003941377.1 manually curated; PFAM: helix-turn-helix domain protein; KEGG: seg:SG1189 predicted phage regulatory protein; SMART: helix-turn-helix domain protein YP_003941378.1 manually curated; PFAM: helix-turn-helix domain protein; KEGG: sty:STY2065 putative Cro repressor; SMART: helix-turn-helix domain protein YP_003941379.1 KEGG: kpe:KPK_3397 hypothetical protein YP_003941380.1 KEGG: seg:SG1192 predicted phage protein YP_003941381.1 KEGG: enc:ECL_01666 DNA replication protein DnaC YP_003941382.1 KEGG: ent:Ent638_2260 hypothetical protein YP_003941383.1 PFAM: protein of unknown function DUF977; KEGG: ent:Ent638_2259 hypothetical protein YP_003941384.1 KEGG: kva:Kvar_2055 hypothetical protein YP_003941385.1 KEGG: spq:SPAB_00985 hypothetical protein YP_003941386.1 KEGG: sed:SeD_A2298 hypothetical protein YP_003941387.1 KEGG: kpn:KPN_01394 hypothetical protein YP_003941388.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: kpn:KPN_01395 putative site-specific DNA methylase YP_003941389.1 KEGG: bac:BamMC406_3431 hypothetical protein YP_003941390.1 PFAM: DinI family protein; KEGG: ent:Ent638_2256 DinI family protein YP_003941391.1 manually curated; KEGG: kpe:KPK_3384 hypothetical protein YP_003941392.1 KEGG: kva:Kvar_2087 hypothetical protein YP_003941393.1 PFAM: endodeoxyribonuclease RusA; KEGG: pmr:PMI0486 phage Holliday junction resolvase YP_003941394.1 KEGG: kpe:KPK_3381 hypothetical protein YP_003941395.1 PFAM: antitermination Q family protein; KEGG: eum:ECUMN_0878 antitermination protein from phage origin YP_003941396.1 KEGG: ecy:ECSE_0287 hypothetical protein YP_003941397.1 KEGG: ddc:Dd586_1316 hypothetical protein YP_003941398.1 PFAM: Colicin immunity protein/pyocin immunity protein; KEGG: eoi:ECO111_p4-10 probable colicin immunity protein YP_003941399.1 KEGG: kva:Kvar_2091 hypothetical protein YP_003941400.1 PFAM: protein of unknown function DUF754; KEGG: kpn:KPN_01404 hypothetical protein YP_003941401.1 KEGG: ecw:EcE24377A_2232 hypothetical protein YP_003941402.1 KEGG: ent:Ent638_0796 hypothetical protein YP_003941403.1 PFAM: protein of unknown function DUF1441; KEGG: enc:ECL_01685 hypothetical protein YP_003941404.1 PFAM: terminase GpA; KEGG: enc:ECL_01686 phage terminase large subunit YP_003941405.1 KEGG: efe:EFER_4448 conserved hypothetical protein from putative prophage YP_003941406.1 KEGG: enc:ECL_01688 phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda YP_003941407.1 PFAM: peptidase S14 ClpP; KEGG: ecf:ECH74115_3134 putative phage portal protein, lambda family YP_003941408.1 PFAM: protein of unknown function UCP030771; KEGG: enc:ECL_01703 hypothetical protein YP_003941409.1 KEGG: ect:ECIAI39_4884 conserved hypothetical protein from putative prophage YP_003941410.1 PFAM: Prophage minor tail Z family protein; KEGG: enc:ECL_01705 GP11 YP_003941411.1 PFAM: minor tail U; KEGG: enc:ECL_01706 minor tail protein U YP_003941412.1 KEGG: enc:ECL_01707 GP13; PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein YP_003941413.1 KEGG: enc:ECL_01708 GP14; TIGRFAM: phage minor tail protein G; PFAM: minor tail protein G YP_003941414.1 manually curated; TIGRFAM: phage tail assembly protein T; KEGG: enc:ECL_01709 phage tail assembly protein T; PFAM: Minor tail T family protein YP_003941415.1 KEGG: enc:ECL_01710 GP16; TIGRFAM: phage tail tape measure protein, lambda family; PFAM: Prophage tail length tape measure YP_003941416.1 PFAM: minor tail family protein; KEGG: enc:ECL_01711 GP17 YP_003941417.1 KEGG: enc:ECL_01712 GP18; TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L YP_003941418.1 KEGG: enc:ECL_01713 GP19; PFAM: NLP/P60 protein; SMART: Mov34/MPN/PAD-1 family protein YP_003941419.1 manually curated; KEGG: pmy:Pmen_1534 hypothetical protein YP_003941420.1 PFAM: lambda tail assembly I; KEGG: eta:ETA_24210 putative phage tail assembly protein YP_003941421.1 PFAM: protein of unknown function DUF1983; Fibronectin type III domain protein; KEGG: ent:Ent638_2219 fibronectin, type III domain-containing protein YP_003941422.1 KEGG: ent:Ent638_2216 hypothetical protein YP_003941423.1 PFAM: tail assembly chaperone gp38; KEGG: cro:ROD_09031 putative phage tail fibre assembly protein YP_003941424.1 KEGG: cko:CKO_01842 DNA polymerase V subunit UmuD; manually curated; PFAM: Peptidase S24/S26A/S26B, conserved region YP_003941425.1 KEGG: eoj:ECO26_1697 DNA polymerase V subunit UmuC; PFAM: UMUC domain protein DNA-repair protein YP_003941426.1 PFAM: protein of unknown function DUF159; KEGG: kva:Kvar_1824 protein of unknown function DUF159 YP_003941427.1 KEGG: kpu:KP1_3538 hypothetical protein; TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein YP_003941428.1 KEGG: kpu:KP1_3537 tyrosine-specific transport protein; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease YP_003941429.1 KEGG: kpu:KP1_3536 hypothetical protein; TIGRFAM: Protein of unknown function DUF2492; PFAM: Protein of unknown function DUF2492 YP_003941430.1 KEGG: sek:SSPA0869 ferritin; PFAM: Ferritin Dps family protein YP_003941431.1 KEGG: enc:ECL_01387 putative lipoprotein YP_003941432.1 PFAM: Ribose/galactose isomerase; KEGG: cro:ROD_19581 putative sugar phosphate isomerase YP_003941433.1 PFAM: major facilitator superfamily MFS_1; KEGG: ent:Ent638_2482 major facilitator transporter YP_003941434.1 KEGG: kva:Kvar_1706 hypothetical protein YP_003941435.1 KEGG: enc:ECL_01391 anaerobic C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter YP_003941436.1 PFAM: Ferritin Dps family protein; KEGG: cro:ROD_19551 ferritin-like protein 2 YP_003941437.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: kva:Kvar_1709 periplasmic binding protein/LacI transcriptional regulator YP_003941438.1 KEGG: ent:Ent638_2475 L-arabinose transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941439.1 PFAM: inner-membrane translocator; KEGG: kpu:KP1_3525 L-arabinose transporter permease protein YP_003941440.1 PFAM: UspA domain-containing protein; KEGG: kpu:KP1_3522 universal stress protein UspC YP_003941441.1 PFAM: flagellar transcriptional activator; KEGG: esa:ESA_01337 transcriptional activator FlhD YP_003941442.1 PFAM: flagellar transcriptional activator FlhC; KEGG: ses:SARI_01016 transcriptional activator FlhC YP_003941443.1 KEGG: sed:SeD_A1321 flagellar motor protein MotA YP_003941444.1 PFAM: OmpA/MotB domain protein; KEGG: ses:SARI_01018 flagellar motor protein MotB YP_003941445.1 KEGG: cko:CKO_01061 chemotaxis protein CheA; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; CheY binding protein; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein YP_003941446.1 KEGG: cko:CKO_01062 purine-binding chemotaxis protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_003941447.1 KEGG: sew:SeSA_A2074 methyl-accepting chemotaxis protein II; PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein YP_003941448.1 KEGG: enc:ECL_01413 methyl-accepting protein IV; PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein YP_003941449.1 PFAM: MCP methyltransferase CheR-type; KEGG: sed:SeD_A1327 chemotaxis methyltransferase CheR; SMART: MCP methyltransferase CheR-type YP_003941450.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: cko:CKO_01069 chemotaxis-specific methylesterase; SMART: response regulator receiver YP_003941451.1 KEGG: cro:ROD_19301 chemotaxis protein CheY; PFAM: response regulator receiver; SMART: response regulator receiver YP_003941452.1 PFAM: Chemotaxis phosphatase CheZ; KEGG: sea:SeAg_B1207 chemotaxis regulator CheZ YP_003941453.1 KEGG: stt:t0963 flagellar biosynthesis protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter YP_003941454.1 KEGG: eoi:ECO111_2465 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein YP_003941455.1 PFAM: flagellar FlhE family protein; KEGG: set:SEN1091 flagellar protein FlhE precursor YP_003941456.1 TIGRFAM: penicillin-binding protein 2; KEGG: stm:STM1910 putative penicillin-binding protein; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003941457.1 TIGRFAM: arginyl-tRNA synthetase; KEGG: ses:SARI_01039 arginyl-tRNA synthetase YP_003941458.1 PFAM: protein of unknown function DUF991; KEGG: enc:ECL_01425 hypothetical protein YP_003941459.1 PFAM: CutC family protein; KEGG: kpe:KPK_1898 copper homeostasis protein CutC YP_003941460.1 KEGG: stt:t0971 hypothetical protein; TIGRFAM: methyltransferase; PFAM: methyltransferase YP_003941461.1 KEGG: efe:EFER_1202 AdoMet-dependent methyltransferase; TIGRFAM: methyltransferase; PFAM: Methyltransferase type 12 YP_003941462.1 KEGG: cro:ROD_19151 hypothetical protein YP_003941463.1 PFAM: protein of unknown function DUF72; KEGG: sea:SeAg_B1220 hypothetical protein YP_003941464.1 PFAM: isochorismatase hydrolase; KEGG: kva:Kvar_1724 isochorismatase hydrolase YP_003941465.1 KEGG: kva:Kvar_1725 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein YP_003941466.1 PFAM: NUDIX hydrolase; KEGG: kva:Kvar_1726 NUDIX hydrolase YP_003941467.1 PFAM: protein of unknown function DUF28; KEGG: esa:ESA_01378 hypothetical protein YP_003941468.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: cko:CKO_01098 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_003941469.1 KEGG: cro:ROD_19031 holliday junction ATP-dependent DNA helicase; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein YP_003941470.1 TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; KEGG: cro:ROD_19021 holliday junction ATP-dependent DNA helicase; SMART: AAA ATPase YP_003941471.1 PFAM: ABC-3 protein; KEGG: kpu:KP1_3504 high-affinity zinc transporter membrane component YP_003941472.1 KEGG: kva:Kvar_1732 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941473.1 PFAM: periplasmic solute binding protein; KEGG: ent:Ent638_2426 high-affinity zinc transporter periplasmic component YP_003941474.1 KEGG: enc:ECL_01442 hypothetical protein; PFAM: Peptidase M23; Opacity-associated protein A domain protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_003941475.1 manually curated; TIGRFAM: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; KEGG: kva:Kvar_1735 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; PFAM: lipid A biosynthesis acyltransferase YP_003941476.1 TIGRFAM: pyruvate kinase; KEGG: efe:EFER_1218 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_003941477.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cro:ROD_18931 putative hex-regulon repressor (RpiR-family transcriptional regulator) YP_003941478.1 TIGRFAM: glucose-6-phosphate 1-dehydrogenase; KEGG: ctu:Ctu_25340 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_003941479.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: kpu:KP1_3495 phosphogluconate dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003941480.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: kva:Kvar_1744 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase YP_003941481.1 TIGRFAM: phosphoribosylglycinamide formyltransferase 2; KEGG: kva:Kvar_1745 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_003941482.1 KEGG: cro:ROD_18861 hypothetical protein YP_003941483.1 PFAM: protein of unknown function DUF533; KEGG: ent:Ent638_2417 hypothetical protein YP_003941484.1 KEGG: cko:CKO_01121 protease 2; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller YP_003941485.1 KEGG: kpe:KPK_1929 exodeoxyribonuclease X; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_003941486.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ses:SARI_01069 hypothetical protein YP_003941487.1 PFAM: DNA polymerase II beta subunit; KEGG: enc:ECL_01454 DNA polymerase III subunit theta YP_003941488.1 PFAM: copper resistance protein CopC; KEGG: cko:CKO_01125 hypothetical protein YP_003941489.1 KEGG: kpn:KPN_02357 putative resistance protein YP_003941490.1 PFAM: Protein of unknown function DUF2511; KEGG: kva:Kvar_1753 protein of unknown function DUF2511 YP_003941491.1 KEGG: kva:Kvar_3381 diguanylate phosphodiesterase; PFAM: EAL domain protein; SMART: EAL domain protein YP_003941492.1 PFAM: protein of unknown function DUF1471; KEGG: yahO; UPF0379 protein YahO YP_003941493.1 KEGG: kva:Kvar_1825 putative lipoprotein YP_003941494.1 PFAM: protein of unknown function DUF535; KEGG: kpe:KPK_1935 hypothetical protein YP_003941495.1 KEGG: enc:ECL_01464 serine/threonine protein phosphatase 1; PFAM: metallophosphoesterase YP_003941496.1 PFAM: protein of unknown function DUF1480; KEGG: kva:Kvar_1829 protein of unknown function DUF1480 YP_003941497.1 manually curated; TIGRFAM: RNA methylase, NOL1/NOP2/sun family; KEGG: kva:Kvar_1830 RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein YP_003941498.1 PFAM: Mammalian cell entry related domain protein; KEGG: cko:CKO_01139 hypothetical protein YP_003941499.1 KEGG: ent:Ent638_2403 PqiA family integral membrane protein; TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A YP_003941500.1 KEGG: enc:ECL_01469 hypothetical protein; PFAM: GAF domain protein; SMART: GAF domain protein YP_003941501.1 PFAM: Fertility inhibition FinO-like; KEGG: see:SNSL254_A1985 putative solute/DNA competence effector YP_003941502.1 SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: kpu:KP1_3473 carboxy-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein YP_003941503.1 PFAM: peptidase M48 Ste24p; KEGG: esa:ESA_01421 heat shock protein HtpX YP_003941504.1 PFAM: major facilitator superfamily MFS_1; KEGG: kva:Kvar_1837 major facilitator superfamily MFS_1 YP_003941505.1 KEGG: cko:CKO_01146 hypothetical protein; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR YP_003941506.1 KEGG: cro:ROD_18661 hypothetical protein YP_003941507.1 KEGG: ctu:Ctu_25090 hypothetical protein YP_003941508.1 KEGG: cko:CKO_01151 hypothetical protein YP_003941509.1 KEGG: cro:ROD_18621 cold shock-like protein CspC; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_003941510.1 KEGG: kva:Kvar_1843 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003941511.1 KEGG: kva:Kvar_1844 rRNA (guanine-N(1)-)-methyltransferase; PFAM: Methyltransferase type 11 YP_003941512.1 PFAM: protein of unknown function DUF204; KEGG: enc:ECL_01483 hypothetical protein YP_003941513.1 PFAM: protein of unknown function DUF986; KEGG: kpe:KPK_1957 hypothetical protein YP_003941514.1 KEGG: kva:Kvar_1847 PTS system, mannose/fructose/sorbose family, IID subunit; TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component YP_003941515.1 KEGG: cko:CKO_01160 hypothetical protein; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit YP_003941516.1 TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA subunit; PTS system, mannose/fructose/sorbose family, IIB subunit; KEGG: see:SNSL254_A1969 PTS system mannose-specific transporter subunit IIAB; PFAM: PTS system sorbose subfamily IIB component; PTS system fructose subfamily IIA component YP_003941517.1 PFAM: Integral membrane protein TerC; CBS domain containing protein; transporter-associated region; KEGG: efe:EFER_1260 putative membrane protein fused with conserved domain YP_003941518.1 TIGRFAM: L-serine dehydratase 1; KEGG: ent:Ent638_2383 L-serine ammonia-lyase; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_003941519.1 PFAM: NUDIX hydrolase; KEGG: kva:Kvar_1853 NUDIX hydrolase YP_003941520.1 KEGG: kpe:KPK_1965 aminodeoxychorismate synthase, component I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein YP_003941521.1 PFAM: protein of unknown function UPF0181; KEGG: sdy:SDY_1717 hypothetical protein YP_003941522.1 PFAM: Endoribonuclease L-PSP; KEGG: kva:Kvar_1863 endoribonuclease L-PSP YP_003941523.1 KEGG: kpu:KP1_3450 putative ATP-dependent helicase; PFAM: type III restriction protein res subunit; SMART: helicase c2; DEAD-like helicase YP_003941524.1 PFAM: peptidase M22 glycoprotease; KEGG: kpe:KPK_1969 glycoprotease family protein YP_003941525.1 KEGG: kpu:KP1_3448 putative outer membrane protein; TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp YP_003941526.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ebd:ECBD_1837 long-chain-fatty-acid--CoA ligase YP_003941527.1 KEGG: enc:ECL_01500 ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; manually curated; TIGRFAM: ribonuclease D; SMART: 3'-5' exonuclease; HRDC domain protein YP_003941528.1 KEGG: enc:ECL_01501 cell division topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE YP_003941529.1 TIGRFAM: septum site-determining protein MinD; KEGG: enc:ECL_01502 cell division inhibitor MinD YP_003941530.1 KEGG: kpu:KP1_3443 septum formation inhibitor; TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC YP_003941531.1 PFAM: protein of unknown function DUF709; KEGG: cro:ROD_18371 hypothetical protein YP_003941532.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: kva:Kvar_1873 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_003941533.1 PFAM: protein of unknown function UPF0153; KEGG: cro:ROD_18351 hypothetical protein YP_003941534.1 KEGG: ent:Ent638_2367 disulfide bond formation protein B; manually curated; PFAM: Disulphide bond formation protein DsbB YP_003941535.1 KEGG: kpu:KP1_3436 sodium/proton antiporter; TIGRFAM: Na+/H+ antiporter NhaB; PFAM: Na+H+ antiporter NhaB YP_003941536.1 TIGRFAM: fatty acid metabolism transcriptional regulator FadR; PFAM: fatty acid responsive transcription factor FadR domain protein; regulatory protein GntR HTH; KEGG: kva:Kvar_1878 fatty acid metabolism transcriptional regulator FadR; SMART: regulatory protein GntR HTH YP_003941537.1 PFAM: SpoVR family protein; KEGG: ecm:EcSMS35_1961 SpoVR family protein YP_003941538.1 PFAM: FAD dependent oxidoreductase; KEGG: cko:CKO_01193 D-amino acid dehydrogenase small subunit YP_003941539.1 TIGRFAM: alanine racemase; KEGG: enc:ECL_01514 alanine racemase; PFAM: alanine racemase domain protein YP_003941540.1 PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; transporter-associated region; KEGG: kpu:KP1_3430 potassium/proton antiporter YP_003941541.1 KEGG: enc:ECL_01516 L,D-carboxypeptidase A; PFAM: peptidase U61 LD-carboxypeptidase A YP_003941542.1 PFAM: Lytic transglycosylase catalytic; KEGG: enc:ECL_01517 lytic transglycosylase, catalytic YP_003941543.1 PFAM: YcgR family protein; type IV pilus assembly PilZ; KEGG: ent:Ent638_2358 YcgR family protein YP_003941544.1 PFAM: Transglycosylase-associated protein; KEGG: ent:Ent638_2357 transglycosylase-associated protein YP_003941545.1 KEGG: ent:Ent638_2355 trehalase; PFAM: glycoside hydrolase family 37 YP_003941546.1 TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: kpn:KPN_00288 ATP-binding component of phosphonate transport; SMART: AAA ATPase YP_003941547.1 KEGG: kva:Kvar_4095 phosphonate ABC transporter, periplasmic phosphonate binding protein; manually curated; TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate binding protein; phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_003941548.1 KEGG: kpe:KPK_4403 phosphonate ABC transporter, permease protein; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003941549.1 KEGG: kva:Kvar_4097 phosphonate ABC transporter, inner membrane subunit; TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003941550.1 KEGG: kva:Kvar_4098 HAD-superfamily subfamily IB hydrolase, TIGR01490; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_003941551.1 KEGG: etr:ETAE_1370 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003941552.1 PFAM: protein of unknown function DUF886; KEGG: kva:Kvar_3028 protein of unknown function DUF886 YP_003941553.1 KEGG: kva:Kvar_3027 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003941554.1 KEGG: kva:Kvar_3026 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003941555.1 KEGG: kva:Kvar_3025 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003941556.1 KEGG: kva:Kvar_3024 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941557.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: kva:Kvar_3023 histidine ammonia-lyase YP_003941558.1 KEGG: ses:SARI_02972 hypothetical protein YP_003941559.1 KEGG: ecw:EcE24377A_1711 outer membrane autotransporter domain-containing protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein YP_003941560.1 PFAM: regulatory protein LuxR; KEGG: etr:ETAE_2871 hypothetical protein YP_003941561.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: kpn:KPN_01710 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_003941562.1 KEGG: kva:Kvar_2618 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain-containing protein; SMART: Helix-turn-helix, AraC domain YP_003941563.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: app:CAP2UW1_0146 heavy metal sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003941564.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: dar:Daro_2259 two component heavy metal response transcriptional regulator; SMART: response regulator receiver YP_003941565.1 PFAM: acriflavin resistance protein; KEGG: har:HEAR1043 multidrug ABC transporter membrane protein YP_003941566.1 KEGG: reu:Reut_A3424 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003941567.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: dar:Daro_2303 hypothetical protein YP_003941568.1 KEGG: pmr:PMI0625 C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like YP_003941569.1 KEGG: pmr:PMI0626 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003941570.1 KEGG: eic:NT01EI_2143 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase-like; fumarate lyase YP_003941571.1 PFAM: MmgE/PrpD family protein; KEGG: eic:NT01EI_2142 hypothetical protein YP_003941572.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eic:NT01EI_2140 HTH-type transcriptional regulator PecT YP_003941573.1 KEGG: enc:ECL_01591 transcriptional regulator, MerR family/albicidin resistance protein; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR YP_003941574.1 KEGG: eta:ETA_09530 acylhomoserine lactone synthase; PFAM: autoinducer synthesis protein YP_003941575.1 KEGG: eta:ETA_09520 transcriptional activator protein; PFAM: Autoinducer-binding domain protein; regulatory protein LuxR; SMART: regulatory protein LuxR YP_003941576.1 KEGG: kpu:KP1_3361 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related YP_003941577.1 TIGRFAM: peptidyl-tRNA hydrolase; KEGG: kva:Kvar_1940 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003941578.1 PFAM: Protein of unknown function DUF2583; KEGG: ent:Ent638_2343 hypothetical protein YP_003941579.1 KEGG: enc:ECL_01592 sulfate permease; TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS YP_003941580.1 TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: cko:CKO_01271 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003941581.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: enc:ECL_01594 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_003941582.1 KEGG: enc:ECL_01595 outer membrane lipoprotein LolB; TIGRFAM: outer membrane lipoprotein LolB; PFAM: outer membrane lipoprotein LolB YP_003941583.1 KEGG: kva:Kvar_1947 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; Shikimate/quinate 5-dehydrogenase YP_003941584.1 KEGG: cko:CKO_01275 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein YP_003941585.1 KEGG: kva:Kvar_1949 protein-(glutamine-N5) methyltransferase, release factor-specific; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small YP_003941586.1 KEGG: kpu:KP1_3346 putative transcriptional regulator YP_003941587.1 KEGG: efe:EFER_1746 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003941588.1 KEGG: eum:ECUMN_1515 calcium/sodium:proton antiporter; TIGRFAM: calcium/proton exchanger; PFAM: sodium/calcium exchanger membrane region YP_003941589.1 PFAM: ChaC family protein; KEGG: cko:CKO_01283 hypothetical protein YP_003941590.1 KEGG: kva:Kvar_1956 hypothetical protein YP_003941591.1 KEGG: enc:ECL_01608 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003941592.1 PFAM: DsrE family protein; KEGG: kva:Kvar_1957 DsrE family protein YP_003941593.1 PFAM: PEBP family protein; KEGG: esa:ESA_01515 hypothetical protein YP_003941594.1 KEGG: kva:Kvar_1965 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003941595.1 KEGG: kpe:KPK_2091 nitrate/nitrite sensor protein NarX; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein YP_003941596.1 KEGG: enc:ECL_01621 nitrite extrusion protein; TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1 YP_003941597.1 TIGRFAM: nitrate reductase, alpha subunit; KEGG: enc:ECL_01622 nitrate reductase 1, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_003941598.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: enc:ECL_01623 nitrate reductase 1, beta subunit YP_003941599.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; KEGG: kpu:KP1_3323 nitrate reductase 1 delta subunit; PFAM: TorD-like chaperone YP_003941600.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; KEGG: sbo:SBO_1839 nitrate reductase 1 cytochrome b(NR), gamma subunit; PFAM: Nitrate reductase gamma subunit YP_003941601.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: enc:ECL_01626 hypothetical protein YP_003941602.1 KEGG: enc:ECL_01627 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_003941603.1 KEGG: cko:CKO_01310 formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein YP_003941604.1 KEGG: kva:Kvar_1976 sec-C motif domain protein; manually curated; PFAM: SEC-C motif domain protein YP_003941605.1 KEGG: cko:CKO_01312 hypothetical protein; manually curated; PFAM: Patatin YP_003941606.1 KEGG: cko:CKO_01313 response regulator of RpoS; PFAM: response regulator receiver; SMART: response regulator receiver YP_003941607.1 KEGG: cko:CKO_01314 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_003941608.1 KEGG: enc:ECL_01633 H-NS protein; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS YP_003941609.1 manually curated; KEGG: kpu:KP1_3312 thymidine kinase; PFAM: thymidine kinase YP_003941610.1 PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: enc:ECL_01635 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_003941611.1 KEGG: ses:SARI_01205 hypothetical protein; manually curated; PFAM: multiple antibiotic resistance (MarC)-related protein YP_003941612.1 KEGG: ent:Ent638_2302 extracellular solute-binding protein; manually curated; PFAM: extracellular solute-binding protein family 5 YP_003941613.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: enc:ECL_01638 peptide/nickel transport system permease protein YP_003941614.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: enc:ECL_01639 peptide/nickel transport system permease protein YP_003941615.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: kva:Kvar_1988 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003941616.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: kva:Kvar_1989 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003941617.1 PFAM: Ion transport protein; KEGG: ent:Ent638_2297 ion transport protein YP_003941618.1 PFAM: protein of unknown function DUF440; KEGG: kva:Kvar_1991 protein of unknown function DUF440 YP_003941619.1 KEGG: cko:CKO_01326 cardiolipin synthetase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase YP_003941620.1 KEGG: cro:ROD_17581 hypothetical protein YP_003941621.1 PFAM: YCII-related; KEGG: set:SEN1296 YciI-like protein YP_003941622.1 manually curated; TIGRFAM: TonB family protein; KEGG: cko:CKO_01329 transport protein TonB; PFAM: TonB domain YP_003941623.1 PFAM: Fructosamine/Ketosamine-3-kinase; KEGG: enc:ECL_02426 fructosamine kinase YP_003941624.1 KEGG: kpu:KP1_3290 6-phosphofructokinase 2; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_003941625.1 PFAM: protein of unknown function DUF481; KEGG: ent:Ent638_1722 hypothetical protein YP_003941626.1 PFAM: SNARE associated Golgi protein; KEGG: xne:XNC1_3887 hypothetical protein YP_003941627.1 KEGG: cro:ROD_13371 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein YP_003941628.1 manually curated; TIGRFAM: translation initiation factor IF-3; KEGG: eoj:ECO26_2490 translation initiation factor IF-3; PFAM: Translation initiation factor 3-like YP_003941629.1 KEGG: cro:ROD_13391 50S ribosomal subunit protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35 YP_003941630.1 KEGG: cro:ROD_13401 50S ribosomal subunit protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20 YP_003941631.1 KEGG: cko:CKO_01741 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein YP_003941632.1 TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: cko:CKO_01740 phenylalanyl-tRNA synthetase subunit beta YP_003941633.1 TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: ent:Ent638_1730 integration host factor subunit alpha; SMART: histone family protein DNA-binding protein YP_003941634.1 PFAM: transport system permease protein; KEGG: stt:t1221 vtamin B12-transporter permease YP_003941635.1 KEGG: esa:ESA_02112 putative glutathione peroxidase; PFAM: glutathione peroxidase YP_003941636.1 KEGG: cko:CKO_01735 vitamin B12-transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941637.1 PFAM: NLP/P60 protein; KEGG: cro:ROD_13471 putative lipoprotein YP_003941638.1 KEGG: cko:CKO_01732 hypothetical protein; PFAM: EAL domain protein; SMART: EAL domain protein YP_003941639.1 PFAM: protein of unknown function UPF0061; KEGG: kva:Kvar_2027 protein of unknown function UPF0061 YP_003941640.1 KEGG: ent:Ent638_1737 hemin importer ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941641.1 PFAM: transport system permease protein; KEGG: enc:ECL_02399 iron complex transport system permease protein YP_003941642.1 PFAM: periplasmic binding protein; KEGG: cko:CKO_03741 hypothetical protein YP_003941643.1 PFAM: Haemin-degrading family protein; KEGG: enc:ECL_02397 putative hemin transport protein YP_003941644.1 KEGG: enc:ECL_02396 iron complex outermembrane recepter protein; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor YP_003941645.1 PFAM: Hemin uptake protein hemP; KEGG: enc:ECL_02395 hypothetical protein YP_003941646.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: efe:EFER_1360 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003941647.1 PFAM: protein of unknown function DUF299; KEGG: enc:ECL_02393 hypothetical protein YP_003941648.1 KEGG: cko:CKO_01725 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein YP_003941649.1 PFAM: protein of unknown function UPF0118; KEGG: kva:Kvar_2032 protein of unknown function UPF0118 YP_003941650.1 PFAM: FAD linked oxidase domain protein; KEGG: ent:Ent638_1747 FAD linked oxidase domain-containing protein YP_003941651.1 PFAM: thioesterase superfamily protein; KEGG: ctu:Ctu_18690 esterase YdiI YP_003941652.1 PFAM: SirA-like domain-containing protein; KEGG: ent:Ent638_2271 hypothetical protein YP_003941653.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: set:SEN1043 putative inner membrane protein YP_003941654.1 KEGG: kva:Kvar_3191 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase YP_003941655.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: stm:STM1998 DNA polymerase V subunit UmuD YP_003941656.1 KEGG: kpe:KPK_3125 DNA polymerase V subunit UmuC; PFAM: UMUC domain protein DNA-repair protein YP_003941657.1 KEGG: cro:ROD_13661 Fe-S cluster assembly protein; TIGRFAM: FeS assembly scaffold SufA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein YP_003941658.1 KEGG: kpn:KPN_02140 cysteine desulfurase activator complex subunit SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein YP_003941659.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: cro:ROD_13681 ABC transport ATP-binding protein (component of SufBCD complex); SMART: AAA ATPase YP_003941660.1 KEGG: enc:ECL_02367 cysteine desulfurase activator complex subunit SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein YP_003941661.1 KEGG: ebr:ECB_01649 bifunctional cysteine desulfurase/selenocysteine lyase; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V YP_003941662.1 PFAM: Fe-S metabolism associated SufE; KEGG: ent:Ent638_1765 cysteine desufuration protein SufE YP_003941663.1 KEGG: ecm:EcSMS35_1518 LysM/ErfK/YbiS/YcfS/YnhG family protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_003941664.1 PFAM: LPP repeat-containing protein; KEGG: kpu:KP1_3230 murein lipoprotein YP_003941665.1 TIGRFAM: pyruvate kinase; KEGG: cko:CKO_01709 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_003941666.1 KEGG: kva:Kvar_2143 hypothetical protein YP_003941667.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: kpn:KPN_02127 molybdate ABC transporter periplasmic substrate-binding protein YP_003941668.1 KEGG: kpu:KP1_3221 putative ABC transport system ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941669.1 PFAM: transport system permease protein; KEGG: kpu:KP1_3220 putative ABC transport system permease component YP_003941670.1 PFAM: periplasmic binding protein; KEGG: kva:Kvar_2151 periplasmic binding protein YP_003941671.1 KEGG: kpe:KPK_2218 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_003941672.1 KEGG: kpn:KPN_02104 ATP-binding component of ferric enterobactin transport; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941673.1 PFAM: transport system permease protein; KEGG: kpu:KP1_3194 putative iron compound ABC transport system permease component YP_003941674.1 PFAM: transport system permease protein; KEGG: kva:Kvar_2173 transport system permease protein YP_003941675.1 PFAM: periplasmic binding protein; KEGG: kpu:KP1_3191 putative iron compound ABC transport system periplasmic binding component YP_003941676.1 PFAM: sugar isomerase (SIS); KEGG: kpu:KP1_3190 putative transcriptional regulator YP_003941677.1 KEGG: ctu:Ctu_32990 histidine-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor YP_003941678.1 KEGG: kva:Kvar_2177 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003941679.1 KEGG: kpn:KPN_02097 putative ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941680.1 PFAM: protein of unknown function DUF152; KEGG: kpu:KP1_3209 hypothetical protein YP_003941681.1 KEGG: ent:Ent638_3401 response regulator receiver protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003941682.1 KEGG: ent:Ent638_3400 response regulator receiver protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003941683.1 KEGG: scl:sce8555 protein kinase YP_003941684.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ses:SARI_01599 hypothetical protein YP_003941685.1 PFAM: Polysulphide reductase NrfD; KEGG: spq:SPAB_01944 hypothetical protein YP_003941686.1 KEGG: see:SNSL254_A1498 tetrathionate reductase subunit B YP_003941687.1 KEGG: stt:t1254 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003941688.1 KEGG: spe:Spro_1065 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_003941689.1 PFAM: transposase IS200-family protein; KEGG: stt:t2986 transposase for insertion sequence element IS200 YP_003941690.1 KEGG: cko:CKO_01685 hypothetical protein YP_003941691.1 KEGG: slt:Slit_1763 hypothetical protein YP_003941692.1 KEGG: cko:CKO_01214 hypothetical protein YP_003941693.1 PFAM: Fimbrial protein domain-containing protein; KEGG: cko:CKO_01216 hypothetical protein YP_003941694.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: esa:ESA_01975 hypothetical protein YP_003941695.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: kva:Kvar_2589 fimbrial biogenesis outer membrane usher protein YP_003941696.1 PFAM: Fimbrial protein domain-containing protein; KEGG: cko:CKO_01220 hypothetical protein YP_003941697.1 PFAM: Fimbrial protein domain-containing protein; KEGG: cro:ROD_18141 putative fimbrial subunit YP_003941698.1 KEGG: cro:ROD_18131 putative LuxR-family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003941699.1 KEGG: ctu:Ctu_1p00360 hypothetical protein YP_003941700.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: mfa:Mfla_1114 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein YP_003941701.1 manually curated; KEGG: etr:ETAE_1876 trans-2-enoyl-CoA reductase; PFAM: short-chain alcohol dehydrogenase YP_003941702.1 PFAM: sodium:dicarboxylate symporter; KEGG: stt:t1236 putative transporter YP_003941704.1 KEGG: pjd:Pjdr2_4560 galactoside O-acetyltransferase YP_003941705.1 KEGG: ses:SARI_01557 multidrug efflux protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003941706.1 TIGRFAM: riboflavin synthase, alpha subunit; KEGG: ent:Ent638_1784 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_003941707.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: eoh:ECO103_1803 cyclopropane fatty acyl phospholipid synthase YP_003941708.1 KEGG: see:SNSL254_A1538 inner membrane transport protein YdhC; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1 YP_003941709.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sbc:SbBS512_E1856 putative DNA-binding transcriptional regulator YP_003941710.1 KEGG: sbc:SbBS512_E1857 DNA-binding transcriptional repressor PurR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003941711.1 PFAM: major facilitator superfamily MFS_1; KEGG: kva:Kvar_2307 major facilitator superfamily MFS_1 YP_003941712.1 KEGG: sed:SeD_A1912 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like YP_003941713.1 PFAM: NLP/P60 protein; KEGG: enc:ECL_02336 NLP/P60 protein YP_003941714.1 KEGG: enc:ECL_02335 hypothetical protein; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin YP_003941715.1 TIGRFAM: ribonuclease T; PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: cko:CKO_01664 ribonuclease T; SMART: Exonuclease YP_003941716.1 TIGRFAM: lactoylglutathione lyase; KEGG: gloA; lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_003941717.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ssn:SSON_1506 N-ethylmaleimide reductase YP_003941718.1 PFAM: regulatory protein TetR; KEGG: cko:CKO_01661 hypothetical protein YP_003941719.1 PFAM: protein of unknown function DUF1289; KEGG: kpe:KPK_2361 hypothetical protein YP_003941720.1 PFAM: aldo/keto reductase; KEGG: ecw:EcE24377A_1858 oxidoreductase YdhF YP_003941721.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: kpn:KPN_01984 hypothetical protein YP_003941722.1 PFAM: secretion protein HlyD family protein; KEGG: kpn:KPN_01983 putative multidrug resistance protein YP_003941723.1 PFAM: protein of unknown function DUF1656; KEGG: kva:Kvar_2321 protein of unknown function DUF1656 YP_003941724.1 KEGG: kpu:KP1_3054 transcriptional regulator SlyA; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003941725.1 KEGG: eoh:ECO103_3457 putative transporter; TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_003941726.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: kpu:KP1_3053 hypothetical protein; SMART: GGDEF domain containing protein YP_003941727.1 KEGG: set:SEN1602 outer membrane lipoprotein SlyB precursor YP_003941728.1 PFAM: protein of unknown function UPF0075; KEGG: enc:ECL_02319 anhydro-N-acetylmuramic acid kinase YP_003941729.1 PFAM: Protein of unknown function DUF2091, periplasmic; KEGG: kva:Kvar_2326 protein of unknown function DUF2091, periplasmic YP_003941730.1 TIGRFAM: pyridoxamine 5'-phosphate oxidase; KEGG: kva:Kvar_2327 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; Pyridoxine 5'-phosphate oxidase, dimerisation-like YP_003941731.1 SMART: RNA-binding S4 domain protein; TIGRFAM: tyrosyl-tRNA synthetase; KEGG: cro:ROD_14301 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein YP_003941732.1 TIGRFAM: pyridoxal kinase; KEGG: kpu:KP1_3046 pyridoxamine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_003941733.1 PFAM: Glutathione S-transferase domain; KEGG: ent:Ent638_1813 glutathionine S-transferase YP_003941734.1 KEGG: enc:ECL_02313 putative tripeptide transporter permease; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region YP_003941735.1 SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: ses:SARI_01529 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop YP_003941736.1 KEGG: kva:Kvar_2333 electron transport complex, RnfABCDGE type, E subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit YP_003941737.1 KEGG: kva:Kvar_2334 electron transport complex, RnfABCDGE type, G subunit; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein YP_003941738.1 KEGG: kpu:KP1_3039 electron transport complex protein RnfD; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein YP_003941739.1 KEGG: kpn:KPN_01966 electron transport complex protein RnfC; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain YP_003941740.1 KEGG: ent:Ent638_1820 electron transport complex protein RnfB; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein YP_003941741.1 KEGG: ecz:ECS88_1675 Na(+)-translocating NADH-quinone reductase subunit E; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit YP_003941742.1 PFAM: Protein of unknown function DUF2569; KEGG: kpu:KP1_3034 putative oxidoreductase YP_003941743.1 PFAM: Haemolysin expression modulating family protein; KEGG: ctu:Ctu_20090 OriC-binding nucleoid-associated protein YP_003941744.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cro:ROD_14451 putative oxidoreductase YP_003941745.1 TIGRFAM: adenosine deaminase; KEGG: cko:CKO_01630 adenosine deaminase; PFAM: adenosine/AMP deaminase YP_003941746.1 PFAM: aminotransferase class I and II; KEGG: kpn:KPN_01511 bifunctional PLP-dependent beta-cystathionase; repressor of maltose regulon through interaction with MalT YP_003941747.1 TIGRFAM: PTS system, maltose and glucose-specific IIBC subunit; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose-like IIB subunint; KEGG: kpn:KPN_01512 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003941748.1 KEGG: kpu:KP1_2522 DNA-binding transcriptional repressor MalI; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003941749.1 PFAM: protein of unknown function DUF945; KEGG: ses:SARI_01512 hypothetical protein YP_003941750.1 TIGRFAM: mannose-6-phosphate isomerase, class I; KEGG: enc:ECL_02275 mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type I YP_003941751.1 KEGG: enc:ECL_02274 fumarase; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region YP_003941752.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ecp:ECP_1421 glyceraldehyde 3-phosphate dehydrogenase C; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_003941753.1 KEGG: seh:SeHA_C3265 DNA-binding transcriptional repressor ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003941754.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: kpn:KPN_pKPN3p05919 ArsD YP_003941755.1 KEGG: kpn:KPN_pKPN3p05920 arsenical pump-driving ATPase (arsenite-translocating ATPase); TIGRFAM: arsenite-activated ATPase ArsA YP_003941756.1 KEGG: zmn:Za10_1863 arsenical pump membrane protein; TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein YP_003941757.1 TIGRFAM: arsenate reductase; KEGG: ctu:Ctu_3p00410 arsenate reductase; PFAM: arsenate reductase and related YP_003941758.1 KEGG: cko:CKO_01452 cytochrome b561 YP_003941759.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kva:Kvar_2353 transcriptional regulator, LysR family YP_003941760.1 PFAM: protein of unknown function DUF1338; KEGG: enc:ECL_02041 hypothetical protein YP_003941761.1 PFAM: Carboxylesterase type B; KEGG: cko:CKO_01460 hypothetical protein YP_003941762.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ent:Ent638_1967 LysR family transcriptional regulator YP_003941763.1 KEGG: smd:Smed_3391 hypothetical protein YP_003941764.1 PFAM: aminotransferase class I and II; KEGG: enc:ECL_02037 putative aminotransferase YP_003941765.1 KEGG: enc:ECL_02036 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003941766.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; KEGG: hch:HCH_02971 GGDEF domain-containing protein; SMART: GGDEF domain containing protein; PAS domain containing protein YP_003941767.1 PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: kva:Kvar_2359 periplasmic glucan biosynthesis protein MdoG YP_003941768.1 PFAM: O-methyltransferase family 3; KEGG: kpu:KP1_2488 putative O-methyltransferase YP_003941769.1 PFAM: protein of unknown function DUF218; KEGG: ent:Ent638_1952 hypothetical protein YP_003941770.1 PFAM: Aldehyde Dehydrogenase; KEGG: kpu:KP1_2509 aldehyde dehydrogenase A YP_003941771.1 KEGG: ent:Ent638_1832 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like YP_003941772.1 KEGG: kpu:KP1_2527 DNA replication terminus site-binding protein; TIGRFAM: DNA replication terminus site-binding protein; PFAM: site-binding protein DNA replication region YP_003941773.1 KEGG: kpu:KP1_2528 sensor protein RstB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003941774.1 KEGG: kpu:KP1_2531 DNA-binding transcriptional regulator RstA; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003941775.1 PFAM: GlpM family protein; KEGG: enc:ECL_02268 hypothetical protein YP_003941776.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: efe:EFER_1431 short chain dehydrogenase YP_003941777.1 KEGG: enc:ECL_02266 arginine/ornithine antiporter; TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region YP_003941778.1 PFAM: protein of unknown function DUF1471; KEGG: kpu:KP1_2535 hypothetical protein YP_003941779.1 KEGG: kpu:KP1_2539 NAD(P) transhydrogenase subunit alpha; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: alanine dehydrogenase/PNT domain protein YP_003941780.1 KEGG: enc:ECL_02263 NADP transhydrogenase beta subunit; PFAM: NAD(P) transhydrogenase beta subunit YP_003941781.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: kpu:KP1_2186 leucine export protein LeuE YP_003941782.1 KEGG: kpu:KP1_3020 alcohol dehydrogenase class III; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_003941783.1 KEGG: cko:CKO_01456 hypothetical protein; PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein YP_003941784.1 KEGG: kpu:KP1_2541 hypothetical protein YP_003941785.1 PFAM: UspA domain-containing protein; KEGG: enc:ECL_02261 universal stress protein YP_003941786.1 KEGG: cro:ROD_16721 fumarate and nitrate reduction regulatory protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp YP_003941787.1 KEGG: cro:ROD_16711 methylated-DNA-protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein YP_003941788.1 KEGG: cko:CKO_01412 hypothetical protein; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2 YP_003941789.1 KEGG: kva:Kvar_2804 drug resistance transporter, Bcr/CflA subfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1 YP_003941790.1 KEGG: spe:Spro_0026 beta-lactamase domain-containing protein YP_003941791.1 PFAM: protein of unknown function UPF0118; KEGG: spq:SPAB_01833 putative transport protein YP_003941792.1 PFAM: small multidrug resistance protein; KEGG: kva:Kvar_2793 small multidrug resistance protein YP_003941793.1 PFAM: small multidrug resistance protein; KEGG: cro:ROD_14661 multidrug resistance protein YP_003941794.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE4 domain protein; KEGG: ent:Ent638_1913 periplasmic sensor diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein YP_003941795.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: ent:Ent638_1914 peptidase S1 and S6, chymotrypsin/Hap YP_003941796.1 KEGG: kpe:KPK_2886 hypothetical protein YP_003941797.1 KEGG: kpe:KPK_2885 carboxypeptidase family protein; PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase YP_003941799.1 PFAM: protein of unknown function DUF1471; KEGG: yahO; UPF0379 protein YahO YP_003941800.1 KEGG: kva:Kvar_2511 hypothetical protein YP_003941801.1 PFAM: protein of unknown function DUF187; KEGG: ent:Ent638_2030 hypothetical protein YP_003941802.1 PFAM: Protein of unknown function DUF2132; KEGG: eca:ECA2239 hypothetical protein YP_003941803.1 PFAM: EAL domain protein; KEGG: enc:ECL_02515 diguanylate phosphodiesterase YP_003941804.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cro:ROD_35211 hypothetical protein YP_003941805.1 KEGG: spe:Spro_1013 methyltransferase; PFAM: Methyltransferase type 12; SMART: Ribosomal RNA adenine methylase transferase-like YP_003941806.1 PFAM: type II and III secretion system protein; KEGG: ype:YPO2280 putative phage-related secreted protein YP_003941807.1 PFAM: major facilitator superfamily MFS_1; KEGG: msl:Msil_0873 major facilitator superfamily MFS_1 YP_003941808.1 PFAM: regulatory protein TetR; KEGG: msl:Msil_0871 transcriptional regulator, TetR family YP_003941809.1 PFAM: transmembrane pair domain-containing protein; KEGG: set:SEN2864 hypothetical protein YP_003941810.1 KEGG: cko:CKO_04223 hypothetical protein; manually curated; PFAM: LysR substrate-binding; regulatory protein LysR YP_003941811.1 PFAM: Spore coat protein U; KEGG: vap:Vapar_1923 spore coat U domain protein YP_003941812.1 KEGG: vap:Vapar_1922 P pilus assembly protein chaperone PapD-like protein YP_003941813.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: vap:Vapar_1921 fimbrial biogenesis outer membrane usher protein YP_003941814.1 PFAM: Spore coat protein U; KEGG: vap:Vapar_1920 spore coat U domain protein YP_003941815.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: ses:SARI_01144 hypothetical protein YP_003941816.1 TIGRFAM: phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: pam:PANA_1870 Cat YP_003941817.1 KEGG: ecr:ECIAI1_1531 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 12 YP_003941818.1 KEGG: kpu:KP1_2682 hypothetical protein YP_003941819.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dda:Dd703_1820 GCN5-related N-acetyltransferase YP_003941820.1 KEGG: cro:ROD_15231 hypothetical protein YP_003941821.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfv:SFV_1580 altronate oxidoreductase YP_003941822.1 KEGG: kpu:KP1_1473 hypothetical protein YP_003941823.1 KEGG: esa:ESA_02980 hypothetical protein YP_003941824.1 PFAM: GCN5-related N-acetyltransferase; KEGG: kpu:KP1_2679 putative acyltransferase YP_003941825.1 TIGRFAM: Glutaminase, core; KEGG: kpn:KPN_01636 glutaminase; PFAM: Glutaminase, core YP_003941826.1 KEGG: enc:ECL_01991 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003941827.1 PFAM: Aldehyde Dehydrogenase; KEGG: kpe:KPK_2744 putative succinate semialdehyde dehydrogenase YP_003941828.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kva:Kvar_2700 transcriptional regulator, LysR family YP_003941829.1 KEGG: enc:ECL_02004 phenazine biosynthesis protein PhzF family; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_003941830.1 PFAM: major facilitator superfamily MFS_1; KEGG: ent:Ent638_2000 sugar efflux transporter YP_003941831.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: set:SEN1530 multiple drug resistance protein MarC YP_003941832.1 KEGG: marR; multiple antibiotic resistance protein MarR; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003941833.1 KEGG: cko:CKO_01552 DNA-binding transcriptional activator MarA; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003941834.1 KEGG: ent:Ent638_1996 hypothetical protein YP_003941835.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ent:Ent638_1995 O-acetylserine/cysteine export protein YP_003941836.1 PFAM: major facilitator superfamily MFS_1; KEGG: ent:Ent638_1994 putative MFS-type transporter YdeE YP_003941837.1 manually curated; KEGG: ebd:ECBD_2105 hypothetical protein YP_003941838.1 manually curated; KEGG: kpe:KPK_4070 hypothetical protein YP_003941839.1 PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; KEGG: enc:ECL_02203 hypothetical protein YP_003941840.1 PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; KEGG: enc:ECL_02204 hypothetical protein YP_003941841.1 PFAM: glycosyltransferase sugar-binding region containing DXD motif; KEGG: ctu:Ctu_1p00750 hypothetical protein YP_003941842.1 PFAM: protein of unknown function DUF1353; KEGG: sse:Ssed_2204 hypothetical protein YP_003941843.1 KEGG: kva:Kvar_2271 hypothetical protein YP_003941844.1 KEGG: ent:Ent638_1940 dipeptidyl carboxypeptidase II; PFAM: peptidase M3A and M3B thimet/oligopeptidase F YP_003941845.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ent:Ent638_1939 3-hydroxy acid dehydrogenase YP_003941846.1 KEGG: enc:ECL_02172 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003941847.1 PFAM: UspA domain-containing protein; KEGG: kva:Kvar_2769 UspA domain protein YP_003941849.1 KEGG: etr:ETAE_0786 glutamate decarboxylase and related PLP-dependent protein YP_003941850.1 PFAM: amino acid permease-associated region; KEGG: etr:ETAE_0785 putative glutamate/gamma-aminobutyrate antiporter YP_003941851.1 PFAM: amino acid permease-associated region; KEGG: etr:ETAE_0784 putative glutamate/gamma-aminobutyrate anti-porter YP_003941852.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: enc:ECL_02178 fructuronate reductase YP_003941853.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpy:Bphyt_4723 major facilitator superfamily MFS_1 YP_003941854.1 KEGG: cko:CKO_01573 hypothetical protein; TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1 YP_003941855.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ent:Ent638_1933 putative dehydrogenase YP_003941856.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: cko:CKO_01575 hypothetical protein YP_003941857.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pam:PANA_0589 ProW YP_003941858.1 KEGG: pam:PANA_0590 NrtD; PFAM: ABC nitrate/sulphonate/bicarbonate family transporter, ATPase subunit; ABC transporter related; SMART: AAA ATPase YP_003941859.1 PFAM: protein of unknown function UPF0060; KEGG: cko:CKO_01576 hypothetical protein YP_003941861.1 PFAM: protein of unknown function DUF1283; KEGG: ses:SARI_01439 hypothetical protein YP_003941862.1 KEGG: cro:ROD_14791 spermidine N1-acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_003941863.1 PFAM: protein of unknown function UPF0257; KEGG: enc:ECL_02187 hypothetical protein YP_003941864.1 PFAM: Hok/gef cell toxic protein; KEGG: eoi:ECO111_p2-048 polypeptide destructive to membrane potential YP_003941865.1 PFAM: protein of unknown function DUF1161; KEGG: ent:Ent638_1926 hypothetical protein YP_003941866.1 KEGG: enc:ECL_02189 anaerobic dimethyl sulfoxide reductase, A subunit; TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region YP_003941867.1 KEGG: enc:ECL_02192 twin-argninine leader-binding protein DmsD YP_003941868.1 PFAM: Cl- channel voltage-gated family protein; KEGG: enc:ECL_02218 putative voltage-gated ClC-type chloride channel ClcB YP_003941869.1 TIGRFAM: dethiobiotin synthase; KEGG: kva:Kvar_2782 dethiobiotin synthase YP_003941870.1 PFAM: ROK family protein; KEGG: kpn:KPN_01574 putative NAGC-like transcriptional regulator YP_003941871.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cko:CKO_01595 hypothetical protein YP_003941872.1 PFAM: major facilitator superfamily MFS_1; KEGG: kva:Kvar_2785 major facilitator superfamily MFS_1 YP_003941873.1 TIGRFAM: peroxiredoxin, OsmC subfamily; KEGG: sfv:SFV_1739 osmotically inducible protein; PFAM: OsmC family protein YP_003941874.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kva:Kvar_2459 transcriptional regulator, LysR family YP_003941875.1 KEGG: kpu:KP1_2907 hypothetical protein YP_003941876.1 PFAM: 30S ribosomal subunit S22; KEGG: kva:Kvar_2457 30S ribosomal subunit S22 YP_003941877.1 KEGG: lel:LELG_03131 hypothetical protein YP_003941878.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: enc:ECL_01910 malate dehydrogenase YP_003941879.1 KEGG: enc:ECL_01909 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003941880.1 PFAM: protein of unknown function DUF344; KEGG: ent:Ent638_2051 hypothetical protein YP_003941881.1 KEGG: kpe:KPK_2493 hypothetical protein YP_003941882.1 manually curated; KEGG: kpe:KPK_2492 hypothetical protein YP_003941883.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: ent:Ent638_2052 formate dehydrogenase-N subunit gamma YP_003941884.1 KEGG: ent:Ent638_2053 formate dehydrogenase beta subunit; TIGRFAM: formate dehydrogenase, beta subunit; PFAM: Formate dehydrogenase transmembrane domain protein YP_003941885.1 TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: ent:Ent638_2054 formate dehydrogenase alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_003941886.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: kva:Kvar_2437 molybdopterin oxidoreductase Fe4s4 region YP_003941887.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: kpe:KPK_2487 hypothetical protein YP_003941888.1 PFAM: major facilitator superfamily MFS_1; KEGG: cko:CKO_01506 hypothetical protein YP_003941889.1 PFAM: regulatory protein TetR; KEGG: kpe:KPK_2478 transcriptional regulator, TetR family YP_003941890.1 KEGG: enc:ECL_01894 nitrate/nitrite transporter; TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1 YP_003941891.1 TIGRFAM: nitrate reductase, alpha subunit; KEGG: cko:CKO_01503 hypothetical protein; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_003941892.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: kpu:KP1_2947 cryptic nitrate reductase 2 beta subunit YP_003941893.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; KEGG: kpu:KP1_2948 cryptic nitrate reductase 2 delta subunit; PFAM: TorD-like chaperone YP_003941894.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; KEGG: kpu:KP1_2949 cryptic nitrate reductase 2 gamma subunit; PFAM: Nitrate reductase gamma subunit YP_003941895.1 KEGG: enc:ECL_01888 N-hydroxyarylamine O-acetyltransferase; PFAM: N-acetyltransferase YP_003941896.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: cro:ROD_15751 flavin reductase-like protein YP_003941897.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: enc:ECL_01880 4-oxalocrotonate tautomerase YP_003941898.1 KEGG: pfs:PFLU2487 hypothetical protein YP_003941899.1 PFAM: amino acid permease-associated region; KEGG: kpu:KP1_2969 L-asparagine permease YP_003941900.1 PFAM: protein of unknown function DUF903; KEGG: kva:Kvar_2398 protein of unknown function DUF903 YP_003941901.1 PFAM: Pyrrolo-quinoline quinone repeat-containing protein; KEGG: kpn:KPN_01908 putative receptor YP_003941902.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: kpu:KP1_2972 probable TonB-dependent receptor YP_003941903.1 KEGG: ctu:Ctu_20950 HTH-type transcriptional regulator McbR; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003941904.1 KEGG: kpu:KP1_2977 putative regulator; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein YP_003941905.1 KEGG: cro:ROD_15831 putative acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_003941906.1 PFAM: protein of unknown function DUF606; KEGG: ent:Ent638_2105 hypothetical protein YP_003941907.1 KEGG: mpo:Mpop_3142 chaperone protein DnaK YP_003941908.1 KEGG: asu:Asuc_0801 bifunctional aspartokinase I/homeserine dehydrogenase I YP_003941909.1 KEGG: ptm:GSPATT00021744001 hypothetical protein YP_003941910.1 PFAM: Protein of unknown function DUF2526; KEGG: sbc:SbBS512_E1716 hypothetical protein YP_003941911.1 PFAM: extracellular solute-binding protein family 5; KEGG: ent:Ent638_2107 extracellular solute-binding protein YP_003941912.1 KEGG: enc:ECL_01858 ssrAB activated protein YP_003941913.1 PFAM: virulence protein SrfB; KEGG: enc:ECL_01857 virulence protein SrfB YP_003941914.1 PFAM: Virulence effector, SrfC; KEGG: enc:ECL_01856 putative virulence protein YP_003941915.1 PFAM: alpha/beta hydrolase fold; KEGG: ent:Ent638_0821 alpha/beta hydrolase fold YP_003941916.1 PFAM: Protein of unknown function DUF2566; KEGG: kva:Kvar_2385 protein of unknown function DUF2566 YP_003941917.1 KEGG: eoi:ECO111_1835 hypothetical protein YP_003941918.1 KEGG: kpu:KP1_2987 hypothetical protein YP_003941919.1 KEGG: ent:Ent638_2124 gamma-aminobutyraldehyde dehydrogenase; TIGRFAM: 1-pyrroline dehydrogenase; PFAM: Aldehyde Dehydrogenase YP_003941920.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: enc:ECL_01852 putative spermidine/putrescine transport system permease protein YP_003941921.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eum:ECUMN_1690 putative spermidine/putrescine transporter subunit ; permease of ABC superfamily transporter YP_003941922.1 KEGG: ent:Ent638_2127 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase YP_003941923.1 PFAM: extracellular solute-binding protein family 1; KEGG: eum:ECUMN_1688 putative spermidine/putrescine transporter subunit ; periplasmic-binding component of ABC superfamily transporter YP_003941924.1 KEGG: kpn:KPN_01929 transcription regulator GntR; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH YP_003941925.1 KEGG: ect:ECIAI39_4313 tryptophan permease TnaB; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease YP_003941926.1 TIGRFAM: tryptophanase; KEGG: sfv:SFV_3805 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003941927.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: kpu:KP1_2996 cytochrome bd ubiquinol oxidase subunit I YP_003941928.1 KEGG: esa:ESA_01936 hypothetical protein; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_003941929.1 PFAM: Protein of unknown function DUF2474; KEGG: ent:Ent638_2133 hypothetical protein YP_003941930.1 KEGG: kva:Kvar_2371 hypothetical protein YP_003941931.1 PFAM: peptidase U32; KEGG: kva:Kvar_2369 peptidase U32 YP_003941932.1 KEGG: kpu:KP1_3002 putative regulator; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein YP_003941933.1 KEGG: pct:PC1_0706 hypothetical protein YP_003941934.1 KEGG: kva:Kvar_2367 benzoate transporter; TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein YP_003941935.1 KEGG: enc:ECL_02026 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003941936.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: kpe:KPK_2412 hypothetical protein YP_003941937.1 KEGG: kpu:KP1_3006 hypothetical protein YP_003941938.1 PFAM: extracellular solute-binding protein family 5; KEGG: enc:ECL_02029 extracellular solute-binding protein YP_003941939.1 TIGRFAM: peptidase T; KEGG: ent:Ent638_1976 peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20 YP_003941940.1 TIGRFAM: tellurite resistance protein TehB; KEGG: cro:ROD_16041 tellurite resistance protein YP_003941941.1 KEGG: kva:Kvar_2362 C4-dicarboxylate transporter/malic acid transport protein; TIGRFAM: C4-dicarboxylate transporter/malic acid transport protein; PFAM: C4-dicarboxylate transporter/malic acid transport protein YP_003941942.1 KEGG: cko:CKO_01465 hypothetical protein YP_003941943.1 TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; helicase domain protein; protein of unknown function DUF1605; KEGG: cko:CKO_01440 ATP-dependent RNA helicase HrpA; SMART: DEAD-like helicase ; AAA ATPase; helicase domain protein YP_003941944.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: cko:CKO_01439 azoreductase YP_003941945.1 KEGG: enc:ECL_02141 putative hexapeptide repeat acetyltransferase; TIGRFAM: phenylacetic acid degradation protein PaaY; PFAM: transferase hexapeptide repeat containing protein YP_003941946.1 KEGG: kva:Kvar_2887 transcriptional regulator, PaaX family; TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein domain; PaaX domain protein YP_003941947.1 TIGRFAM: phenylacetate-CoA ligase; KEGG: enc:ECL_02143 phenylacetyl-CoA ligase; PFAM: AMP-dependent synthetase and ligase YP_003941948.1 KEGG: enc:ECL_02144 beta-ketoadipyl CoA thiolase; TIGRFAM: beta-ketoadipyl CoA thiolase; acetyl-CoA acetyltransferase; PFAM: Thiolase-like YP_003941949.1 KEGG: enc:ECL_02145 predicted thioesterase; TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein YP_003941950.1 KEGG: enc:ECL_02146 3-hydroxybutyryl-CoA dehydrogenase; TIGRFAM: 3-hydroxyacyl-CoA dehydrogenase PaaC; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein YP_003941951.1 KEGG: ecy:ECSE_1479 enoyl-CoA hydratase; TIGRFAM: phenylacetate degradation, enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase YP_003941952.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: kpu:KP1_2477 enoyl-CoA hydratase-isomerase YP_003941953.1 KEGG: enc:ECL_02149 phenylacetate-CoA oxygenase, NAD(P)H oxidoreductase component; TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein YP_003941954.1 KEGG: kpu:KP1_2475 phenylacetic acid degradation protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59 YP_003941955.1 KEGG: kva:Kvar_2896 phenylacetate-CoA oxygenase, PaaI subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein YP_003941956.1 KEGG: enc:ECL_02152 phenylacetate-CoA oxygenase, effector protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B YP_003941957.1 KEGG: enc:ECL_02153 phenylacetyl-CoA oxygenase, alpha subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein YP_003941958.1 KEGG: enc:ECL_02154 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase YP_003941959.1 KEGG: kva:Kvar_2900 primary-amine oxidase; PFAM: Copper amine oxidase domain-containing protein; Copper amine oxidase N3-terminal; copper amine oxidase-like domain-containing protein; Copper amine oxidase N2-terminal YP_003941960.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: kva:Kvar_2901 alcohol dehydrogenase GroES domain protein YP_003941961.1 PFAM: Aldehyde Dehydrogenase; KEGG: eoj:ECO26_1989 phenylacetaldehyde dehydrogenase YP_003941962.1 KEGG: enc:ECL_02161 transcriptional activator FeaR; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003941963.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: kpu:KP1_2463 hypothetical protein YP_003941964.1 KEGG: ent:Ent638_1944 putative outer membrane lipoprotein YP_003941965.1 KEGG: ent:Ent638_1943 hypothetical protein YP_003941966.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: enc:ECL_02165 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein YP_003941967.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: kpe:KPK_3024 heat shock protein HslJ YP_003941968.1 PFAM: protein of unknown function DUF333; KEGG: sdy:SDY_1462 hypothetical protein YP_003941969.1 PFAM: porin Gram-negative type; KEGG: sew:SeSA_A1572 outer membrane protein N YP_003941970.1 KEGG: ppr:PBPRA1156 putative outer membrane lipoprotein YP_003941971.1 KEGG: ent:Ent638_2136 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein YP_003941972.1 PFAM: porin Gram-negative type; KEGG: kpn:KPN_01445 outer membrane pore protein N, non-specific YP_003941973.1 KEGG: acd:AOLE_09330 hypothetical protein YP_003941974.1 PFAM: PP-loop domain protein; KEGG: set:SEN1377 C32 tRNA thiolase YP_003941975.1 PFAM: sulfatase; KEGG: ect:ECIAI39_4597 putative membrane-associated, metal-dependent hydrolase YP_003941976.1 KEGG: esa:ESA_01673 hypothetical protein YP_003941977.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: efe:EFER_1629 zinc transporter YP_003941978.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: spe:Spro_4046 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003941979.1 KEGG: ent:Ent638_2145 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_003941980.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: cko:CKO_01413 hypothetical protein; SMART: GGDEF domain containing protein; PAS domain containing protein YP_003941981.1 PFAM: regulatory protein TetR; KEGG: pfl:PFL_4557 TetR family transcriptional regulator YP_003941982.1 KEGG: bur:Bcep18194_C6553 hypothetical protein YP_003941983.1 PFAM: secretion protein HlyD family protein; KEGG: bur:Bcep18194_C6554 multidrug resistance protein MdtN YP_003941984.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: bur:Bcep18194_C6555 multidrug efflux system protein MdtO YP_003941985.1 TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; KEGG: enc:ECL_04054 cellobiose/arbutin/salicin-specific PTS system components IIBC; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003941986.1 PFAM: porin Gram-negative type; KEGG: spe:Spro_3264 outer membrane porin protein C YP_003941987.1 KEGG: enc:ECL_01823 putative intracellular protease/amidase; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain-containing protein YP_003941988.1 PFAM: extracellular solute-binding protein family 5; KEGG: kva:Kvar_3000 extracellular solute-binding protein family 5 YP_003941989.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: cko:CKO_01401 murein peptide amidase A YP_003941990.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: kpn:KPN_01308 L-Ala-D/L-Glu epimerase, a muconate lactonizing enzyme YP_003941991.1 PFAM: Redoxin domain protein; KEGG: enc:ECL_01796 thiol peroxidase YP_003941992.1 KEGG: kpe:KPK_3108 protein AbrB; TIGRFAM: membrane protein AbrB duplication; PFAM: ammonia monooxygenase YP_003941993.1 KEGG: efe:EFER_1651 DNA-binding transcriptional regulator TyrR; PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; PAS fold-4 domain protein; SMART: AAA ATPase; PAS domain containing protein YP_003941994.1 KEGG: yen:YE3602 hydrogenase isoenzymes formation protein; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein YP_003941995.1 KEGG: yen:YE3602A hydrogenase 2 accessory protein HypG; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC) YP_003941996.1 KEGG: yen:YE3603 hydrogenase isoenzymes nickel incorporation protein; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K YP_003941997.1 KEGG: yen:YE3603a hydrogenase nickel incorporation protein HybF; TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA YP_003941998.1 KEGG: eca:ECA1230 hydrogenase 2-specific chaperone YP_003941999.1 KEGG: eca:ECA1229 hydrogenase 2 maturation endopeptidase; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein YP_003942000.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: eca:ECA1228 hydrogenase 2 large subunit YP_003942001.1 PFAM: Polysulphide reductase NrfD; KEGG: eca:ECA1227 putative hydrogenase 2 b cytochrome subunit YP_003942002.1 KEGG: eca:ECA1226 hydrogenase 2 protein HybA YP_003942003.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: eca:ECA1225 hydrogenase 2 small subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003942004.1 PFAM: major facilitator superfamily MFS_1; KEGG: set:SEN0080 putative metabolite transport protein YP_003942005.1 KEGG: cko:CKO_03338 hypothetical protein YP_003942006.1 PFAM: FAD dependent oxidoreductase; KEGG: stm:STM0077 putative oxidoreductase FixC YP_003942007.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: pmr:PMI2652 electron transfer flavoprotein alpha subunit for carnitine metabolism YP_003942008.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ssn:SSON_0049 putative electron transfer flavoprotein FixA YP_003942009.1 KEGG: ses:SARI_02926 L-carnitine/gamma-butyrobetaine antiporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter YP_003942010.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: cro:ROD_00411 crotonobetainyl-CoA dehydrogenase YP_003942011.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: eum:ECUMN_0040 crotonobetainyl-CoA:carnitine CoA-transferase YP_003942012.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cko:CKO_03346 putative crotonobetaine/carnitine-CoA ligase YP_003942013.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: efe:EFER_0044 carnitinyl-CoA dehydratase YP_003942014.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sfv:SFV_0029 carnitine operon protein CaiE YP_003942015.1 KEGG: cko:CKO_03349 DNA-binding transcriptional activator CaiF YP_003942016.1 KEGG: sea:SeAg_B0536 acetyl esterase YP_003942017.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mno:Mnod_2274 sulphate transporter YP_003942018.1 PFAM: MltA-interacting MipA family protein; KEGG: aha:AHA_1673 MltA-interacting protein MipA YP_003942019.1 PFAM: Uncharacterised protein family UPF0283; KEGG: enc:ECL_01793 hypothetical protein YP_003942020.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: eok:G2583_1668 hypothetical protein YP_003942021.1 KEGG: kva:Kvar_3008 phage shock protein PspD; TIGRFAM: phage shock protein PspD; PFAM: shock protein PspD YP_003942022.1 KEGG: kva:Kvar_3009 phage shock protein C, PspC; TIGRFAM: phage shock protein C; PFAM: PspC domain protein YP_003942023.1 KEGG: efe:EFER_1657 phage shock protein B; TIGRFAM: phage shock protein B; PFAM: shock B family protein YP_003942024.1 KEGG: efe:EFER_1658 phage shock protein PspA; TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein YP_003942025.1 TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; KEGG: cro:ROD_17051 PSP operon transcriptional activator; SMART: AAA ATPase YP_003942026.1 PFAM: extracellular solute-binding protein family 5; KEGG: ses:SARI_01278 hypothetical protein YP_003942027.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cro:ROD_17071 peptide ABC transporter, permease protein YP_003942028.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpu:KP1_2333 ABC-type peptide transport system permease component YP_003942029.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: kva:Kvar_3021 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003942030.1 KEGG: set:SEN1337 peptide transport system ATP-binding protein SapF; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942031.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cro:ROD_17111 enoyl-[acyl-carrier-protein] reductase (NADH) YP_003942032.1 KEGG: kpe:KPK_3150 hypothetical protein YP_003942033.1 TIGRFAM: exoribonuclease II; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; KEGG: kpu:KP1_2325 exoribonuclease II; SMART: Cold shock protein YP_003942034.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: ent:Ent638_2181 RNase II stability modulator; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_003942035.1 KEGG: cko:CKO_01370 hypothetical protein YP_003942036.1 KEGG: kva:Kvar_3033 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003942037.1 KEGG: stt:t1618 lipoprotein YP_003942038.1 KEGG: cko:CKO_01366 translation initiation factor SUI1; TIGRFAM: translation initiation factor SUI1; PFAM: translation initiation factor SUI1 YP_003942039.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: ecz:ECS88_1422 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003942040.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: enc:ECL_01747 tetratricopeptide repeat protein YP_003942041.1 KEGG: enc:ECL_01746 hypothetical protein YP_003942042.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: cro:ROD_17221 phosphatidylglycerophosphatase B; SMART: phosphoesterase PA-phosphatase related YP_003942043.1 TIGRFAM: GTP cyclohydrolase II; KEGG: cko:CKO_01360 GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II YP_003942044.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: kpu:KP1_0701 tryptophanyl-tRNA synthetase II; PFAM: aminoacyl-tRNA synthetase class Ib YP_003942045.1 KEGG: cko:CKO_01358 aconitate hydratase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain-containing protein YP_003942046.1 manually curated; KEGG: ent:Ent638_2193 hypothetical protein YP_003942047.1 manually curated; KEGG: sdy:SDY_1348 hypothetical protein YP_003942048.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ent:Ent638_2195 transcriptional regulator CysB YP_003942049.1 SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; TIGRFAM: DNA topoisomerase I; KEGG: kpe:KPK_3166 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase I zinc ribbon domain protein YP_003942050.1 PFAM: Protein of unknown function DUF2498; KEGG: kva:Kvar_3045 protein of unknown function DUF2498 YP_003942051.1 PFAM: Peptidase S49 domain protein; peptidase S49; KEGG: kva:Kvar_3046 peptidase S49 domain protein YP_003942052.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kpn:KPN_01267 short chain dehydrogenase YP_003942053.1 TIGRFAM: cob(I)alamin adenosyltransferase; KEGG: kva:Kvar_3048 cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_003942054.1 KEGG: sbo:SBO_1797 23S rRNA pseudouridylate synthase B; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003942055.1 KEGG: cko:CKO_01342 hypothetical protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain YP_003942056.1 KEGG: cro:ROD_17381 putative phosphoesterase; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003942057.1 KEGG: kva:Kvar_3053 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein YP_003942058.1 KEGG: kva:Kvar_3054 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; glutamine amidotransferase of anthranilate synthase; PFAM: glycosyl transferase family 3; glutamine amidotransferase class-I; Glycosyl transferase, family 3-like YP_003942059.1 PFAM: Indole-3-glycerol phosphate synthase; N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: enc:ECL_01727 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_003942060.1 KEGG: efe:EFER_1695 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003942061.1 KEGG: enc:ECL_01725 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain YP_003942062.1 KEGG: kpn:KPN_01252 putative regulatory protein MarR; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_003942063.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: kva:Kvar_3063 alcohol dehydrogenase zinc-binding domain protein YP_003942064.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cko:CKO_01565 hypothetical protein; SMART: GGDEF domain containing protein YP_003942065.1 KEGG: kva:Kvar_3852 putative lipoprotein YP_003942066.1 PFAM: OmpW family protein; KEGG: kva:Kvar_3067 OmpW family protein YP_003942067.1 PFAM: protein of unknown function UPF0153; KEGG: enc:ECL_01651 hypothetical protein YP_003942068.1 PFAM: protein of unknown function UPF0259; KEGG: enc:ECL_01650 hypothetical protein YP_003942069.1 KEGG: kpu:KP1_2279 intracellular septation protein A; TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A YP_003942070.1 PFAM: thioesterase superfamily protein; KEGG: enc:ECL_01648 acyl-CoA thioester hydrolase YP_003942071.1 KEGG: enc:ECL_02427 putative regulatory protein YP_003942072.1 KEGG: enc:ECL_02428 2-deoxyglucose-6-phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003942073.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: kva:Kvar_3075 membrane-bound metal-dependent hydrolase YP_003942074.1 PFAM: sodium:dicarboxylate symporter; KEGG: ydjN; uncharacterized symporter YdjN YP_003942075.1 PFAM: transposase IS4 family protein; KEGG: pct:PC1_1038 transposase IS4 family protein YP_003942076.1 PFAM: Cell division activator CedA; KEGG: kva:Kvar_3077 cell division activator CedA YP_003942077.1 PFAM: YdjC family protein; KEGG: kpu:KP1_2268 hypothetical protein YP_003942078.1 PFAM: glycoside hydrolase family 4; KEGG: kva:Kvar_3080 glycoside hydrolase family 4 YP_003942079.1 KEGG: kpu:KP1_2266 DNA-binding transcriptional regulator ChbR; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain YP_003942080.1 PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: kva:Kvar_3082 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit YP_003942081.1 TIGRFAM: PTS system, cellobiose-specific IIC subunit; PTS system, lactose/cellobiose family IIC subunit; KEGG: kva:Kvar_3083 PTS system, cellobiose-specific IIC subunit; PFAM: phosphotransferase system EIIC YP_003942082.1 TIGRFAM: PTS system, lactose/cellobiose family IIB subunit; KEGG: sbo:SBO_1352 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit YP_003942083.1 PFAM: SmpA/OmlA domain-containing protein; KEGG: ent:Ent638_1705 DNA-binding transcriptional activator OsmE YP_003942084.1 TIGRFAM: NAD+ synthetase; KEGG: ent:Ent638_1704 NAD synthetase YP_003942085.1 PFAM: protein of unknown function DUF886; KEGG: cko:CKO_01767 hypothetical protein YP_003942086.1 PFAM: protein of unknown function Spy-related; KEGG: kva:Kvar_3088 protein of unknown function Spy-related protein YP_003942087.1 TIGRFAM: succinylglutamate desuccinylase; KEGG: kpu:KP1_2256 succinylglutamate desuccinylase; PFAM: Succinylglutamate desuccinylase/aspartoacylase YP_003942088.1 TIGRFAM: succinylarginine dihydrolase; KEGG: kpu:KP1_2254 succinylarginine dihydrolase; PFAM: Succinylarginine dihydrolase YP_003942089.1 KEGG: kpu:KP1_2253 aldehyde dehyrogenase; TIGRFAM: succinylglutamic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase YP_003942090.1 TIGRFAM: arginine N-succinyltransferase; arginine/ornithine succinyltransferase subunit; KEGG: cko:CKO_01773 arginine succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit YP_003942091.1 KEGG: enc:ECL_02449 bifunctional succinylornithine transaminase/acetylornithine transaminase; TIGRFAM: succinylornithine transaminase family; acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III YP_003942092.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mno:Mnod_3669 mercuric reductase YP_003942093.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: cpi:Cpin_4299 bifunctional deaminase-reductase domain protein YP_003942094.1 KEGG: esa:ESA_pESA3p05526 hypothetical protein YP_003942095.1 KEGG: dze:Dd1591_2454 peroxiredoxin; PFAM: glutathione peroxidase YP_003942096.1 KEGG: ebi:EbC_37040 beta-lactamase-like protein YP_003942097.1 PFAM: aminoglycoside phosphotransferase; KEGG: enc:ECL_02119 hypothetical protein YP_003942098.1 PFAM: Integrase catalytic region; KEGG: ddc:Dd586_2844 transposase IS3/IS911 family protein YP_003942099.1 PFAM: transposase IS3/IS911 family protein; KEGG: dda:Dd703_3081 transposase IS3/IS911 family protein YP_003942100.1 KEGG: kpe:KPK_B0003 transcriptional regulator, AraC family; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003942101.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kpe:KPK_B0004 short chain dehydrogenase YP_003942102.1 KEGG: cro:ROD_16821 hypothetical protein YP_003942103.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: kva:Kvar_2558 protein of unknown function DUF6 transmembrane YP_003942104.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcj:BCAL0776 LysR family regulatory protein YP_003942105.1 KEGG: ecl:EcolC_1654 hypothetical protein YP_003942106.1 PFAM: Uncharacterised conserved protein UCP028704, OpgC; KEGG: esa:ESA_01834 hypothetical protein YP_003942107.1 KEGG: ctu:Ctu_21490 hypothetical protein; PFAM: glycosyl transferase family 2 YP_003942108.1 KEGG: ctu:Ctu_21500 hypothetical protein YP_003942109.1 KEGG: etr:ETAE_1939 hypothetical protein YP_003942110.1 KEGG: etr:ETAE_1940 hypothetical protein YP_003942111.1 KEGG: ctu:Ctu_21530 hypothetical protein YP_003942112.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; response regulator receiver; Hpt domain protein; KEGG: kpu:KP1_2376 hypothetical protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver YP_003942113.1 PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: etr:ETAE_1941 glycoside hydrolase family 2, sugar binding protein YP_003942114.1 PFAM: ATP-binding region ATPase domain protein; KEGG: etr:ETAE_2684 anti-sigma regulatory factor (Ser/Thr protein kinase) YP_003942115.1 KEGG: kva:Kvar_3382 anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS YP_003942116.1 KEGG: etr:ETAE_2686 serine phosphatase RsbU, regulator of sigma subunit; PFAM: Stage II sporulation protein E; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein YP_003942117.1 KEGG: etr:ETAE_1942 hypothetical protein YP_003942118.1 KEGG: kpu:KP1_1976 glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003942119.1 KEGG: kpe:KPK_2032 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2058 YP_003942120.1 PFAM: pseudouridine synthase; KEGG: spe:Spro_3940 pseudouridine synthase YP_003942121.1 PFAM: Cold-shock protein DNA-binding; KEGG: kpu:KP1_3393 cold shock protein E YP_003942122.1 manually curated; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; KEGG: efe:EFER_1316 exonuclease III; PFAM: Endonuclease/exonuclease/phosphatase YP_003942123.1 KEGG: ydjX; UPF0043 membrane protein YdjX; manually curated; PFAM: SNARE associated Golgi protein YP_003942124.1 KEGG: ydjY; uncharacterized protein YdjY YP_003942125.1 PFAM: SNARE associated Golgi protein; KEGG: ecq:ECED1_1954 conserved hypothetical protein; putative inner membrane protein YP_003942126.1 KEGG: kpe:KPK_3227 putative ABC transporter solute-binding protein YP_003942127.1 KEGG: kpn:KPN_01215 ABC transporter membrane protein YP_003942128.1 KEGG: kva:Kvar_3100 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942129.1 KEGG: ebr:ECB_01726 predicted thiosulfate sulfur transferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003942130.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ect:ECIAI39_1296 putative phosphatidyl transferase, inner membrane protein YP_003942131.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: cro:ROD_13001 putative decarboxylase YP_003942132.1 PFAM: NUDIX hydrolase; KEGG: efe:EFER_1306 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_003942133.1 PFAM: protein of unknown function DUF1496; KEGG: cko:CKO_01788 hypothetical protein YP_003942134.1 KEGG: enc:ECL_02460 glutamate dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region YP_003942135.1 PFAM: beta-lactamase; KEGG: stt:t0381 hypothetical protein YP_003942136.1 KEGG: cko:CKO_00358 PTS system N-acetylmuramic acid transporter subunits EIIBC; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003942137.1 PFAM: Protein of unknown function DUF2057; KEGG: cko:CKO_00361 hypothetical protein YP_003942138.1 PFAM: porin Gram-negative type; KEGG: ses:SARI_00441 hypothetical protein YP_003942139.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cko:CKO_00363 hypothetical protein YP_003942140.1 TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; KEGG: kpu:KP1_2236 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein YP_003942141.1 KEGG: enc:ECL_02462 selenophosphate synthetase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003942142.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: kpu:KP1_2232 acid phosphatase; SMART: phosphoesterase PA-phosphatase related YP_003942143.1 PFAM: nitroreductase; KEGG: kva:Kvar_3109 nitroreductase YP_003942144.1 KEGG: cko:CKO_01793 protease 4; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_003942145.1 KEGG: kpu:KP1_2229 cytoplasmic asparaginase I; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase YP_003942146.1 KEGG: cro:ROD_12901 pyrazinamidase/nicotinamidase; PFAM: isochorismatase hydrolase YP_003942147.1 PFAM: protein of unknown function DUF1315; KEGG: kpu:KP1_2224 hypothetical protein YP_003942148.1 TIGRFAM: methionine-R-sulfoxide reductase; KEGG: esa:ESA_02169 methionine sulfoxide reductase B; PFAM: Methionine sulfoxide reductase B YP_003942149.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: enc:ECL_02470 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_003942150.1 PFAM: Aldose 1-epimerase; KEGG: enc:ECL_02471 aldose 1-epimerase YP_003942151.1 PFAM: MltA-interacting MipA family protein; KEGG: kva:Kvar_3120 MltA-interacting MipA family protein YP_003942152.1 KEGG: efe:EFER_1805 conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain; PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein YP_003942153.1 PFAM: protein of unknown function DUF444; KEGG: enc:ECL_02480 hypothetical protein YP_003942154.1 KEGG: rlt:Rleg2_2423 hypothetical protein YP_003942155.1 KEGG: ebr:ECB_03325 nickel transporter subunit; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5 YP_003942156.1 KEGG: eok:G2583_4198 nickel transport system permease protein NikB; TIGRFAM: nickel ABC transporter, permease subunit NikB; PFAM: binding-protein-dependent transport systems inner membrane component YP_003942157.1 KEGG: cro:ROD_43191 nickel ABC transporter, permease protein; TIGRFAM: nickel ABC transporter, permease subunit NikC; PFAM: binding-protein-dependent transport systems inner membrane component YP_003942158.1 TIGRFAM: nickel import ATP-binding protein NikD; PFAM: ABC transporter related; KEGG: cko:CKO_04929 nickel transporter ATP-binding protein NikD; SMART: AAA ATPase YP_003942159.1 TIGRFAM: nickel import ATP-binding protein NikE; PFAM: ABC transporter related; KEGG: cko:CKO_04930 nickel transporter ATP-binding protein NikE; SMART: AAA ATPase YP_003942160.1 KEGG: cko:CKO_04931 nickel responsive regulator; TIGRFAM: nickel-responsive transcriptional regulator NikR; PFAM: NikR nickel binding YP_003942161.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pct:PC1_2250 serine/threonine dehydratase YP_003942162.1 PFAM: Endoribonuclease L-PSP; KEGG: rpf:Rpic12D_4114 endoribonuclease L-PSP YP_003942163.1 PFAM: YheO-like domain-containing protein; KEGG: eca:ECA2041 putative DNA-binding protein YP_003942164.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: enc:ECL_02481 YbaK/prolyl-tRNA synthetase-associated domain protein YP_003942165.1 PFAM: protein of unknown function DUF441; KEGG: kva:Kvar_3170 protein of unknown function DUF441 YP_003942166.1 KEGG: etr:ETAE_2784 AraC-type regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain YP_003942167.1 KEGG: etr:ETAE_2783 putative amino acid/amine transport protein; TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1 YP_003942168.1 KEGG: ent:Ent638_1664 hypothetical protein; PFAM: glutamine amidotransferase class-I YP_003942169.1 PFAM: protein of unknown function DUF488; KEGG: kva:Kvar_3175 protein of unknown function DUF488 YP_003942170.1 PFAM: protein of unknown function DUF333; KEGG: sek:SSPA1458 hypothetical protein YP_003942171.1 SMART: GGDEF domain containing protein; GAF domain protein; TIGRFAM: diguanylate cyclase; KEGG: enc:ECL_02490 diguanylate cyclase with GAF sensor; PFAM: GGDEF domain containing protein; GAF domain protein YP_003942172.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cko:CKO_01335 hypothetical protein; SMART: GGDEF domain containing protein YP_003942173.1 PFAM: Protein of unknown function DUF2534; KEGG: kva:Kvar_3189 protein of unknown function DUF2534 YP_003942174.1 PFAM: Mig-14 family protein; KEGG: esa:ESA_pESA3p05439 hypothetical protein YP_003942175.1 KEGG: ecm:EcSMS35_1396 hypothetical protein YP_003942176.1 PFAM: isochorismatase hydrolase; KEGG: cko:CKO_02173 hypothetical protein YP_003942177.1 KEGG: vap:Vapar_1695 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003942178.1 manually curated; PFAM: regulatory protein DeoR; KEGG: kva:Kvar_2929 transcriptional regulator, DeoR family; SMART: regulatory protein DeoR YP_003942179.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: kpu:KP1_2447 putative oxidoreductase YP_003942180.1 KEGG: gka:GK2006 hydroxyglutarate oxidase YP_003942182.1 KEGG: bcv:Bcav_3654 hypothetical protein YP_003942183.1 KEGG: ecb:100146707 similar to 1A6/DRIM (down-regulated in metastasis) interacting protein YP_003942184.1 KEGG: bph:Bphy_6457 hypothetical protein YP_003942185.1 PFAM: UspA domain-containing protein; KEGG: ent:Ent638_4244 UspA domain-containing protein YP_003942186.1 KEGG: cko:CKO_00426 hypothetical protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Pertactin YP_003942187.1 PFAM: acyltransferase 3; KEGG: reu:Reut_A0736 acyltransferase 3 YP_003942188.1 PFAM: acyltransferase 3; KEGG: btk:BT9727_2535 acyltransferase family protein YP_003942189.1 KEGG: eum:ECUMN_0911 hypothetical protein; putative phage tail fiber assembly protein YP_003942190.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: kpu:KP1_2146 isocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003942191.1 PFAM: pseudouridine synthase; KEGG: enc:ECL_02499 ribosomal large subunit pseudouridine synthase E YP_003942192.1 PFAM: NUDIX hydrolase; KEGG: enc:ECL_02500 NUDIX hydrolase YP_003942193.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: enc:ECL_02501 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_003942194.1 PFAM: protein of unknown function DUF489; KEGG: cko:CKO_01839 hypothetical protein YP_003942195.1 KEGG: cro:ROD_12211 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase domain-containing protein YP_003942196.1 KEGG: kva:Kvar_3243 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003942197.1 KEGG: cko:CKO_01923 sensor protein PhoQ; PFAM: PhoQ Sensor domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003942198.1 SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: ent:Ent638_1641 cupin 4 family protein YP_003942199.1 TIGRFAM: peptidase T; KEGG: ebr:ECB_01125 peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20 YP_003942200.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; KEGG: kpn:KPN_01132 putrescine/spermidine ABC transporter ATPase protein; SMART: AAA ATPase YP_003942201.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: enc:ECL_02512 spermidine/putrescine transport system permease protein YP_003942202.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: enc:ECL_02513 spermidine/putrescine transport system permease protein YP_003942203.1 PFAM: extracellular solute-binding protein family 1; KEGG: enc:ECL_02514 spermidine/putrescine transport system substrate-binding protein YP_003942204.1 PFAM: Silent information regulator protein Sir2; KEGG: kva:Kvar_3263 silent information regulator protein Sir2 YP_003942205.1 PFAM: ROK family protein; KEGG: kpu:KP1_2110 N-acetyl-D-glucosamine kinase YP_003942206.1 KEGG: kpu:KP1_2109 outer membrane-specific lipoprotein transporter subunit LolE; TIGRFAM: lipoprotein releasing system, transmembrane protein LolE; lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214 YP_003942207.1 TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; KEGG: enc:ECL_02519 lipoprotein-releasing system ATP-binding subunit; SMART: AAA ATPase YP_003942208.1 KEGG: kpe:KPK_3440 outer membrane-specific lipoprotein transporter subunit LolC; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214 YP_003942209.1 PFAM: Uncharacterised conserved protein UCP020606; KEGG: ecz:ECS88_4622 hypothetical protein YP_003942210.1 TIGRFAM: transcription-repair coupling factor; PFAM: TRCF domain protein; transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: cko:CKO_01937 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein YP_003942211.1 KEGG: sea:SeAg_B1970 LysM domain/ErfK/YbiS/YcfS/YnhG family protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_003942212.1 PFAM: Fimbrial protein domain-containing protein; KEGG: kva:Kvar_3885 fimbrial protein YP_003942213.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pay:PAU_02408 putative outer membrane protein YP_003942214.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: kva:Kvar_1081 pili assembly chaperone, N-terminal protein YP_003942215.1 PFAM: Fimbrial protein domain-containing protein; KEGG: sbc:SbBS512_E4193 long polar fimbrial operon protein LpfA YP_003942216.1 KEGG: ecc:c1383 hypothetical protein YP_003942217.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: kpu:KP1_2098 respiratory NADH dehydrogenase YP_003942218.1 PFAM: protein of unknown function UPF0227; KEGG: ent:Ent638_1623 hypothetical protein YP_003942219.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: nagZ; beta-hexosaminidase YP_003942220.1 KEGG: cro:ROD_11681 thiamine kinase; PFAM: aminoglycoside phosphotransferase YP_003942221.1 TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: kpu:KP1_2094 putative fibronectin-binding protein YP_003942222.1 PFAM: protein of unknown function DUF1425; KEGG: ent:Ent638_1619 hypothetical protein YP_003942223.1 PFAM: histidine triad (HIT) protein; KEGG: kpu:KP1_2092 hypothetical protein YP_003942224.1 TIGRFAM: PTS system, glucose-specific IIBC subunit; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose-like IIB subunint; KEGG: enc:ECL_02535 PTS system glucose-specific EIICB component; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003942225.1 KEGG: kva:Kvar_3282 hydrolase, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease YP_003942226.1 KEGG: kva:Kvar_3283 DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta prime subunit; PFAM: DNA polymerase III delta subunit YP_003942227.1 TIGRFAM: thymidylate kinase; KEGG: sed:SeD_A2169 thymidylate kinase; PFAM: thymidylate kinase YP_003942228.1 PFAM: aminodeoxychorismate lyase; KEGG: enc:ECL_02539 hypothetical protein YP_003942229.1 KEGG: kva:Kvar_3286 aminodeoxychorismate lyase; TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV YP_003942230.1 KEGG: kva:Kvar_3287 3-oxoacyl-(acyl-carrier-protein) synthase 2; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase YP_003942231.1 KEGG: cro:ROD_11561 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding YP_003942232.1 KEGG: kva:Kvar_3289 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR YP_003942233.1 KEGG: kpu:KP1_2081 acyl carrier protein S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase YP_003942234.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: sbc:SbBS512_E2233 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_003942235.1 KEGG: kpn:KPN_01088 putative glycerol-3-phosphate acyltransferase PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein YP_003942236.1 KEGG: ctu:Ctu_16680 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein YP_003942237.1 PFAM: protein of unknown function DUF177; KEGG: ses:SARI_01808 hypothetical protein YP_003942238.1 KEGG: kpu:KP1_2076 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein YP_003942239.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: kva:Kvar_3296 pseudouridine synthase, RluA family; SMART: RNA-binding S4 domain protein YP_003942240.1 KEGG: kva:Kvar_3298 ribonuclease, Rne/Rng family; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein YP_003942241.1 KEGG: cko:CKO_01976 flagellar hook-associated protein FlgL; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein YP_003942242.1 KEGG: etw:ECSP_1383 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_003942243.1 TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ-like; KEGG: cko:CKO_01978 flagellar rod assembly protein/muramidase FlgJ; SMART: Lysozyme subfamily 2 YP_003942244.1 PFAM: flagellar P-ring protein; KEGG: cko:CKO_01979 flagellar basal body P-ring protein YP_003942245.1 PFAM: flagellar L-ring protein; KEGG: enc:ECL_02559 lagellar L-ring protein precursor FlgH YP_003942246.1 KEGG: cko:CKO_01981 flagellar basal body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_003942247.1 KEGG: cko:CKO_01982 flagellar basal body rod protein FlgF; TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_003942248.1 KEGG: sew:SeSA_A1245 flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_003942249.1 PFAM: flagellar hook capping protein; KEGG: sec:SC1123 flagellar basal body rod modification protein YP_003942250.1 KEGG: cko:CKO_01985 flagellar basal body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_003942251.1 KEGG: enc:ECL_02565 flagellar basal body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein YP_003942252.1 KEGG: cko:CKO_01987 flagellar basal body P-ring biosynthesis protein FlgA; TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein YP_003942253.1 KEGG: cro:ROD_11381 negative regulator of flagellin synthesis (anti-sigma factor); TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein YP_003942254.1 PFAM: FlgN family protein; KEGG: set:SEN1877 flagella synthesis protein FlgN YP_003942255.1 KEGG: kpe:KPK_3476 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein YP_003942256.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cko:CKO_01994 hypothetical protein YP_003942257.1 PFAM: protein of unknown function DUF480; KEGG: kva:Kvar_3303 protein of unknown function DUF480 YP_003942258.1 KEGG: kpu:KP1_2067 ribosomal-protein-S5-alanine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_003942259.1 PFAM: major facilitator superfamily MFS_1; KEGG: kpe:KPK_3480 multidrug resistance protein MdtH YP_003942260.1 KEGG: cko:CKO_02000 hypothetical protein YP_003942261.1 TIGRFAM: dihydroorotase, homodimeric type; KEGG: enc:ECL_02576 dihydroorotase; PFAM: amidohydrolase YP_003942262.1 PFAM: DinI family protein; KEGG: enc:ECL_02577 DNA damage-inducible protein I YP_003942263.1 KEGG: kpu:KP1_2060 biofilm formation regulatory protein BssS YP_003942264.1 KEGG: kpu:KP1_2059 N-methyltryptophan oxidase; PFAM: FAD dependent oxidoreductase YP_003942265.1 KEGG: ent:Ent638_1572 putative inner membrane protein YP_003942266.1 KEGG: ent:Ent638_1569 hypothetical protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_003942267.1 KEGG: ctu:Ctu_16310 lipid A biosynthesis lauroyl acyltransferase; TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase YP_003942268.1 PFAM: major facilitator superfamily MFS_1; KEGG: sea:SeAg_B2035 drug efflux system protein MdtG YP_003942269.1 KEGG: cko:CKO_02016 hypothetical protein YP_003942270.1 PFAM: protein of unknown function DUF1375; KEGG: eck:EC55989_1165 hypothetical protein YP_003942271.1 KEGG: cko:CKO_02018 glucosyltransferase MdoH; manually curated; PFAM: glycosyl transferase family 2 YP_003942272.1 KEGG: kva:Kvar_3318 periplasmic glucan biosynthesis protein MdoG; manually curated; PFAM: periplasmic glucan biosynthesis protein MdoG YP_003942273.1 PFAM: acyltransferase 3; KEGG: kpe:KPK_3495 glucans biosynthesis protein YP_003942274.1 PFAM: Fimbrial protein domain-containing protein; KEGG: ent:Ent638_1560 hypothetical protein YP_003942275.1 KEGG: ent:Ent638_1556 DNA-binding transcriptional regulator CsgD; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003942276.1 KEGG: spv:SPH_1885 cell wall surface anchor family protein YP_003942277.1 PFAM: protein of unknown function DUF1097; KEGG: cko:CKO_02033 hypothetical protein YP_003942278.1 KEGG: efe:EFER_1895 hypothetical protein YP_003942279.1 KEGG: kva:Kvar_3324 PHP domain protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003942280.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: kpu:KP1_2043 2-ketoacid reductase YP_003942281.1 KEGG: ecr:ECIAI1_0019 hypothetical protein YP_003942282.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: seh:SeHA_C2384 fimbrial usher protein YP_003942283.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sea:SeAg_B2296 gram-negative pilus assembly chaperone YP_003942284.1 PFAM: Fimbrial protein domain-containing protein; KEGG: kpe:KPK_0824 fimbrial protein YP_003942285.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: enc:ECL_02608 transcriptional regulator, LysR family YP_003942286.1 PFAM: Pirin domain protein; KEGG: enc:ECL_02609 putative cytoplasmic protein YP_003942287.1 PFAM: isochorismatase hydrolase; KEGG: enc:ECL_02610 isochorismatase hydrolase YP_003942288.1 PFAM: PhoH family protein; KEGG: enc:ECL_02612 phosphate starvation-inducible protein PhoH YP_003942289.1 KEGG: bmt:BSUIS_B0425 hypothetical protein YP_003942290.1 KEGG: spa:M6_Spy1173 LPXTG anchored putative adhesin YP_003942291.1 KEGG: kpu:KP1_2037 hypothetical protein; TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase YP_003942292.1 PFAM: Peptidase M75, Imelysin; KEGG: ent:Ent638_1546 hypothetical protein YP_003942293.1 KEGG: enc:ECL_02615 ferrous iron permease; TIGRFAM: FTR1 family protein; PFAM: iron permease FTR1 YP_003942294.1 PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein; KEGG: ent:Ent638_1544 Na+ dependent nucleoside transporter YP_003942295.1 KEGG: ent:Ent638_1543 putative lipoprotein YP_003942296.1 KEGG: kpe:KPK_3515 sodium/proline symporter; TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_003942297.1 KEGG: kpu:KP1_2030 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase YP_003942298.1 KEGG: sed:SeD_A1197 hypothetical protein YP_003942299.1 PFAM: Tetracycline transcriptional regulator YcdC domain-containing protein; regulatory protein TetR; KEGG: ent:Ent638_1539 TetR family transcriptional regulator YP_003942300.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ent:Ent638_1518 hypothetical protein YP_003942301.1 KEGG: cko:CKO_02047 TrpR binding protein WrbA; TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase YP_003942302.1 KEGG: kva:Kvar_3351 hypothetical protein YP_003942303.1 KEGG: etr:ETAE_1758 glucose-1-phosphatase/inositol phosphatase; PFAM: histidine acid phosphatase YP_003942304.1 PFAM: helix-turn-helix HxlR type; KEGG: ent:Ent638_1511 HxlR family transcriptional regulator YP_003942305.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ent:Ent638_1510 short chain dehydrogenase YP_003942306.1 PFAM: Ion transport 2 domain protein ; TrkA-N domain protein; KEGG: etr:ETAE_3122 voltage-gated potassium channel YP_003942307.1 PFAM: secretion protein HlyD family protein; KEGG: cko:CKO_04936 hypothetical protein YP_003942308.1 KEGG: kva:Kvar_4530 ABC transporter related protein; PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase YP_003942309.1 PFAM: ABC-2 type transporter; KEGG: kpu:KP1_0698 antibiotic transport system permease component YP_003942310.1 PFAM: Aldehyde Dehydrogenase; KEGG: spe:Spro_2410 aldehyde dehydrogenase YP_003942311.1 KEGG: spe:Spro_2411 fis family GAF modulated sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase YP_003942312.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: eoj:ECO26_3955 xanthine dehydrogenase subunit XdhA YP_003942313.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: ecz:ECS88_3146 xanthine dehydrogenase subunit XdhB YP_003942314.1 PFAM: [2Fe-2S]-binding domain-containing protein; ferredoxin; KEGG: sbo:SBO_3117 xanthine dehydrogenase subunit XdhC YP_003942315.1 KEGG: ecm:EcSMS35_3002 sigma-54 dependent trancsriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase YP_003942316.1 KEGG: eoj:ECO26_3959 aspartate/ornithine carbamoyltransferase family protein; TIGRFAM: carbamoyltransferase YgeW; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_003942317.1 KEGG: cro:ROD_34021 putative diaminopropionate ammonia-lyase; TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003942318.1 KEGG: sbo:SBO_3112 peptidase; TIGRFAM: M20/DapE family protein YgeY; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003942319.1 KEGG: cro:ROD_34001 putative hydantoinase (amidohydrolase); TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase YP_003942320.1 TIGRFAM: carbamate kinase; KEGG: ecw:EcE24377A_3199 carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003942321.1 KEGG: ecc:c3453 hypothetical protein; TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; PFAM: protein of unknown function DUF182; biotin/lipoyl attachment domain-containing protein YP_003942322.1 KEGG: etr:ETAE_3172 hypothetical protein YP_003942323.1 KEGG: eum:ECUMN_3220 hypothetical protein YP_003942324.1 KEGG: ecp:ECP_2872 putative selenate reductase subunit YgfK; TIGRFAM: selenate reductase YgfK; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003942325.1 TIGRFAM: selenium metabolism protein SsnA; KEGG: cro:ROD_33951 putative amidohydrolase; PFAM: amidohydrolase YP_003942326.1 KEGG: ecm:EcSMS35_3013 putative selenate reductase subunit YgfM; TIGRFAM: selenate reductase, FAD-binding subunit; PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein YP_003942327.1 TIGRFAM: selenate reductase, molybdenum-binding subunit; KEGG: eum:ECUMN_3224 putative selenate reductase subunit YgfN; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; [2Fe-2S]-binding domain-containing protein YP_003942328.1 KEGG: eok:G2583_3536 putative purine permease YgfO; TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_003942329.1 KEGG: eoj:ECO26_3972 guanine deaminase; TIGRFAM: guanine deaminase; PFAM: amidohydrolase YP_003942330.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: ygfQ; uncharacterized protein YgfQ YP_003942331.1 KEGG: cro:ROD_33941 putative oxidoreductase, 4Fe-4S subunit YP_003942332.1 KEGG: cro:ROD_33931 putative oxidoreductase; TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003942333.1 KEGG: ygfU; purine permease YgfU; TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_003942334.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ecg:E2348C_1912 predicted diguanylate cyclase; SMART: GGDEF domain containing protein YP_003942335.1 KEGG: enc:ECL_03173 iron(III) ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase YP_003942336.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: enc:ECL_03175 iron(III) ABC transporter, permease protein SfuB YP_003942337.1 PFAM: extracellular solute-binding protein family 1; KEGG: kva:Kvar_3380 extracellular solute-binding protein family 1 YP_003942338.1 KEGG: spe:Spro_4456 putative transmembrane anti-sigma factor YP_003942339.1 manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: spe:Spro_4455 ECF subfamily RNA polymerase sigma-24 factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein YP_003942340.1 manually curated; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: spe:Spro_4454 TPR repeat-containing protein; SMART: Tetratricopeptide repeat YP_003942341.1 PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: kpu:KP1_1994 putative diogenase beta subunit YP_003942342.1 KEGG: kva:Kvar_3367 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase YP_003942343.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: kva:Kvar_3366 Rieske (2Fe-2S) iron-sulphur domain protein YP_003942344.1 KEGG: kva:Kvar_3365 choline/carnitine/betaine transporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter YP_003942345.1 TIGRFAM: tartrate dehydrogenase; KEGG: kpe:KPK_3545 tartrate dehydrogenase/decarboxylase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003942346.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kva:Kvar_3363 transcriptional regulator, LysR family YP_003942347.1 KEGG: vha:VIBHAR_02728 hypothetical protein YP_003942348.1 KEGG: spe:Spro_2383 CopG/DNA-binding domain-containing protein YP_003942349.1 KEGG: spe:Spro_2384 spermidine synthase-like protein YP_003942350.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: dde:Dde_1373 (3R)-hydroxymyristoyl-ACP dehydratase YP_003942351.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: kpn:KPN_pKPN3p05880 nodulin 21-like protein YP_003942352.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: plu:plu1526 hypothetical protein YP_003942353.1 PFAM: protein of unknown function DUF1471; KEGG: eum:ECUMN_5017 conserved hypothetical protein; putative exported protein YP_003942354.1 KEGG: asa:ASA_0832 EAL domain-containing protein; PFAM: EAL domain protein; SMART: EAL domain protein YP_003942355.1 manually curated; KEGG: enc:ECL_04078 putative inner membrane protein YP_003942356.1 PFAM: transcriptional regulator domain-containing protein; KEGG: enc:ECL_04079 hypothetical protein YP_003942357.1 KEGG: bid:Bind_1455 hypothetical protein YP_003942358.1 PFAM: extracellular solute-binding protein family 5; KEGG: ent:Ent638_1483 extracellular solute-binding protein YP_003942359.1 PFAM: protein of unknown function UPF0005; KEGG: sed:SeD_A1160 hypothetical protein YP_003942360.1 KEGG: enc:ECL_02677 sulfur transfer protein TusE; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein YP_003942361.1 PFAM: acylphosphatase; KEGG: kva:Kvar_3387 acylphosphatase YP_003942362.1 KEGG: enc:ECL_02679 SAM-dependent methyltransferase; SMART: PUA domain containing protein YP_003942363.1 KEGG: set:SEN0944 heat shock protein HspQ; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region YP_003942364.1 PFAM: CoA-binding domain protein; KEGG: kva:Kvar_3392 CoA-binding domain protein YP_003942365.1 PFAM: Protein of unknown function DUF2057; KEGG: sew:SeSA_A1140 hypothetical protein YP_003942366.1 TIGRFAM: methylglyoxal synthase; KEGG: efe:EFER_1100 methylglyoxal synthase; PFAM: MGS domain protein YP_003942367.1 PFAM: UvrD/REP helicase; KEGG: kva:Kvar_3394 UvrD/REP helicase YP_003942368.1 PFAM: protein of unknown function DUF307; KEGG: kpn:KPN_00990 hypothetical protein YP_003942369.1 TIGRFAM: integral membrane protein, YccS/YhfK family; hypothetical protein; KEGG: enc:ECL_02686 hypothetical protein YP_003942370.1 PFAM: TfoX domain-containing protein; KEGG: enc:ECL_02687 hypothetical protein YP_003942371.1 KEGG: sea:SeAg_B1029 SOS cell division inhibitor; TIGRFAM: cell division inhibitor SulA; PFAM: cell division inhibitor SulA YP_003942372.1 PFAM: OmpA/MotB domain protein; KEGG: enc:ECL_02689 putative outer membrane lipoprotein YP_003942373.1 PFAM: protein of unknown function DUF1047; KEGG: sdy:SDY_0929 hypothetical protein YP_003942374.1 KEGG: kva:Kvar_3401 peptidase, S16 (lon protease) family YP_003942375.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: enc:ECL_02692 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_003942376.1 KEGG: set:SEN0931 ribosome modulation factor; manually curated; PFAM: ribosome modulation factor YP_003942377.1 PFAM: protein of unknown function DUF330; KEGG: kpe:KPK_3587 putative lipoprotein YP_003942378.1 PFAM: Mammalian cell entry related domain protein; KEGG: ses:SARI_01945 paraquat-inducible protein B YP_003942379.1 KEGG: kpu:KP1_1951 paraquat-inducible protein A; TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A YP_003942380.1 KEGG: enc:ECL_02697 putative ABC transporter ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942381.1 KEGG: kpn:KPN_00977 23S rRNA m(2)G2445 methyltransferase; PFAM: RNA methylase; THUMP domain-containing protein; Conserved hypothetical protein CHP00095 YP_003942382.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; ferredoxin; KEGG: sea:SeAg_B1018 MOSC domain protein YP_003942383.1 PFAM: protein of unknown function DUF1379; KEGG: kva:Kvar_3410 protein of unknown function DUF1379 YP_003942384.1 TIGRFAM: dihydroorotate dehydrogenase; KEGG: kva:Kvar_3411 dihydroorotate dehydrogenase; PFAM: dihydroorotate oxidase YP_003942385.1 KEGG: kpu:KP1_1939 aminopeptidase N; TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase YP_003942386.1 KEGG: cro:ROD_10001 nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_003942387.1 KEGG: kva:Kvar_3419 asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_003942388.1 PFAM: porin Gram-negative type; KEGG: esa:ESA_02413 hypothetical protein YP_003942389.1 KEGG: esa:ESA_02414 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II YP_003942390.1 KEGG: enc:ECL_02726 beta-lactamase-like protein YP_003942391.1 PFAM: protein of unknown function DUF882; KEGG: esa:ESA_02416 hypothetical protein YP_003942392.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: kva:Kvar_3424 ErfK/YbiS/YcfS/YnhG family protein YP_003942393.1 PFAM: chromosome segregation and condensation protein MukB domain protein; KEGG: kpn:KPN_00951 cell division protein MukB YP_003942394.1 PFAM: chromosome segregation and condensation protein MukE; KEGG: eoh:ECO103_0967 condesin subunit E YP_003942395.1 PFAM: chromosome segregation and condensation protein MukF; KEGG: enc:ECL_02732 chromosome partition protein MukF YP_003942396.1 PFAM: Methyltransferase type 11; KEGG: cro:ROD_09891 putative S-adenosylmethionine-dependent methyltransferase YP_003942397.1 PFAM: protein of unknown function DUF218; KEGG: kpu:KP1_1920 hypothetical protein YP_003942398.1 KEGG: enc:ECL_02735 hypothetical protein YP_003942399.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: kpu:KP1_1918 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_003942400.1 PFAM: protein of unknown function DUF343; KEGG: kpu:KP1_1917 hypothetical protein YP_003942401.1 PFAM: protein of unknown function DUF1006; KEGG: kpu:KP1_1916 hypothetical protein YP_003942402.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: kva:Kvar_3434 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_003942403.1 TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; KEGG: kpu:KP1_1914 lipid transporter ATP-binding/permease protein; SMART: AAA ATPase YP_003942404.1 KEGG: kpn:KPN_00940 recombination protein; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein YP_003942405.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: ses:SARI_01980 integration host factor subunit beta; SMART: histone family protein DNA-binding protein YP_003942406.1 KEGG: ctu:Ctu_15170 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein YP_003942407.1 TIGRFAM: cytidylate kinase; KEGG: cko:CKO_02163 cytidylate kinase; PFAM: cytidylate kinase region YP_003942408.1 KEGG: kva:Kvar_3440 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_003942409.1 PFAM: aminotransferase class V; manually curated; KEGG: see:SNSL254_A1010 phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase YP_003942410.1 KEGG: kpu:KP1_1904 hypothetical protein; manually curated; PFAM: protein of unknown function DUF181 YP_003942411.1 manually curated; TIGRFAM: formate/nitrite transporter; KEGG: kpu:KP1_1903 probable formate transporter; PFAM: formate/nitrite transporter YP_003942412.1 PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; manually curated; KEGG: enc:ECL_02750 formate acetyltransferase 1; TIGRFAM: formate acetyltransferase YP_003942413.1 TIGRFAM: pyruvate formate-lyase activating enzyme; KEGG: esa:ESA_02443 pyruvate formate lyase-activating enzyme 1; PFAM: Radical SAM domain protein YP_003942414.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cro:ROD_09691 putative DNA binding protein YP_003942415.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: cro:ROD_09681 hypothetical protein YP_003942416.1 KEGG: cro:ROD_09671 hypothetical protein YP_003942417.1 PFAM: Transketolase domain-containing protein; KEGG: cro:ROD_09661 hypothetical protein YP_003942418.1 PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: cro:ROD_09651 hypothetical protein YP_003942419.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: cro:ROD_09641 putative phosphotransferase enzyme II, A component YP_003942420.1 PFAM: amino acid permease-associated region; KEGG: sea:SeAg_B0973 inner membrane transporter YcaM YP_003942421.1 PFAM: major facilitator superfamily MFS_1; KEGG: enc:ECL_02753 putative MFS family transporter protein YP_003942422.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: enc:ECL_02754 anaerobic dimethyl sulfoxide reductase, C subunit YP_003942423.1 TIGRFAM: dimethylsulfoxide reductase, chain B; KEGG: enc:ECL_02755 anaerobic dimethyl sulfoxide reductase, B subunit YP_003942424.1 KEGG: cko:CKO_01582 hypothetical protein; TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region YP_003942425.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: enc:ECL_02754 anaerobic dimethyl sulfoxide reductase, C subunit YP_003942426.1 TIGRFAM: dimethylsulfoxide reductase, chain B; KEGG: enc:ECL_02755 anaerobic dimethyl sulfoxide reductase, B subunit YP_003942427.1 KEGG: enc:ECL_02756 anaerobic dimethyl sulfoxide reductase, A subunit; TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region YP_003942428.1 KEGG: enc:ECL_02757 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like YP_003942429.1 KEGG: kpu:KP1_1893 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_003942430.1 KEGG: kva:Kvar_3453 outer membrane lipoprotein carrier protein LolA; TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA YP_003942431.1 PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: cko:CKO_02181 DNA translocase FtsK YP_003942432.1 KEGG: cro:ROD_09531 leucine-responsive regulatory protein; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_003942433.1 KEGG: ecv:APECO1_1201 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003942434.1 TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: cko:CKO_02185 cysteine/glutathione ABC transporter membrane/ATP-binding component; SMART: AAA ATPase YP_003942435.1 TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; KEGG: kva:Kvar_3458 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; SMART: AAA ATPase YP_003942436.1 TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: cro:ROD_09491 leucyl/phenylalanyl-tRNA-protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_003942437.1 KEGG: cro:ROD_09485 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein YP_003942438.1 KEGG: bxe:Bxe_B2086 hypothetical protein YP_003942439.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: ssn:SSON_0883 ATP-dependent Clp protease ATP-binding subunit; SMART: AAA ATPase YP_003942440.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: efe:EFER_1029 ATP-dependent Clp protease adaptor protein ClpS YP_003942441.1 TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; KEGG: kva:Kvar_3463 cold-shock DNA-binding domain protein; SMART: Cold shock protein YP_003942442.1 KEGG: kpu:KP1_1880 macrolide transporter ATP-binding/permease protein; PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase YP_003942443.1 KEGG: kpu:KP1_1879 macrolide transporter subunit MacA; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003942444.1 PFAM: protein of unknown function DUF535; KEGG: ent:Ent638_1394 hypothetical protein YP_003942445.1 KEGG: kpu:KP1_1877 predicted ATP-dependent endonuclease YP_003942446.1 KEGG: kva:Kvar_3467 MIP family channel protein; TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein YP_003942447.1 PFAM: protein of unknown function DUF340 membrane; KEGG: ses:SARI_02024 hypothetical protein YP_003942448.1 KEGG: sek:SSPA1732 hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane YP_003942449.1 PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: enc:ECL_02779 NADH-dependent HCP oxidoreductase YP_003942450.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: cko:CKO_02209 pyruvate dehydrogenase YP_003942451.1 KEGG: ent:Ent638_1386 L-threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003942452.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: enc:ECL_02783 NAD-dependent epimerase/dehydratase YP_003942453.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: kpu:KP1_1866 putative oxidoreductase YP_003942454.1 PFAM: K potassium transporter; KEGG: ddc:Dd586_2060 K potassium transporter YP_003942455.1 PFAM: glycoside hydrolase family 19; PKD domain containing protein; Carbohydrate-binding family V/XII; KEGG: cko:CKO_02215 hypothetical protein; SMART: Carbohydrate-binding family V/XII; PKD domain containing protein YP_003942456.1 PFAM: Lytic transglycosylase catalytic; KEGG: enc:ECL_02786 hypothetical protein YP_003942457.1 KEGG: cko:CKO_02217 hypothetical protein; PFAM: glycoside hydrolase family 18; Chitinase A domain protein; PKD domain containing protein; Carbohydrate-binding family V/XII; SMART: chitinase II; PKD domain containing protein; Carbohydrate-binding family V/XII YP_003942458.1 KEGG: enc:ECL_02788 general secretion pathway protein O; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV YP_003942459.1 PFAM: General secretion pathway M protein; KEGG: enc:ECL_02789 general secretion pathway protein M YP_003942460.1 KEGG: enc:ECL_02790 general secretion pathway protein L; TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L YP_003942461.1 KEGG: enc:ECL_02791 general secretion pathway protein K YP_003942462.1 TIGRFAM: general secretion pathway protein J; KEGG: enc:ECL_02792 general secretion pathway protein J YP_003942463.1 KEGG: cko:CKO_02223 hypothetical protein; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J YP_003942464.1 KEGG: cko:CKO_02224 hypothetical protein YP_003942465.1 KEGG: cko:CKO_02225 hypothetical protein; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G YP_003942466.1 KEGG: cko:CKO_02226 hypothetical protein; TIGRFAM: general secretion pathway protein F; PFAM: Type II secretion system F domain YP_003942467.1 TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; KEGG: enc:ECL_02797 general secretion pathway protein E; SMART: AAA ATPase YP_003942468.1 KEGG: enc:ECL_02798 general secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein YP_003942469.1 TIGRFAM: general secretion pathway protein C; KEGG: cko:CKO_02229 hypothetical protein YP_003942470.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cko:CKO_02233 hypothetical protein YP_003942471.1 KEGG: cko:CKO_02234 hypothetical protein YP_003942472.1 KEGG: cko:CKO_02235 hypothetical protein YP_003942473.1 KEGG: kpn:KPN_00900 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2 YP_003942474.1 PFAM: protein of unknown function DUF74; KEGG: cko:CKO_02237 hypothetical protein YP_003942475.1 KEGG: enc:ECL_02806 putative lipoprotein YP_003942476.1 manually curated; PFAM: ABC transporter related; KEGG: sdy:SDY_2404 arginine transporter ATP-binding subunit; SMART: AAA ATPase YP_003942477.1 SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; manually curated; KEGG: cko:CKO_02240 hypothetical protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3 YP_003942478.1 KEGG: ent:Ent638_1378 arginine transporter permease subunit ArtQ; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003942479.1 KEGG: enc:ECL_02810 arginine transporter permease subunit ArtM; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003942480.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: enc:ECL_02811 arginine-binding periplasmic protein 2 precursor; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor YP_003942481.1 KEGG: plu:plu2099 hypothetical protein YP_003942482.1 KEGG: plu:plu2098 hypothetical protein YP_003942483.1 KEGG: cko:CKO_02245 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003942484.1 KEGG: ddc:Dd586_0644 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003942485.1 KEGG: ddc:Dd586_0645 hypothetical protein YP_003942486.1 PFAM: oxidoreductase molybdopterin binding; KEGG: ddc:Dd586_0646 oxidoreductase molybdopterin binding protein YP_003942487.1 TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: ddc:Dd586_0647 hypothetical protein YP_003942488.1 KEGG: enc:ECL_02814 23S rRNA methyluridine methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumB; PFAM: (Uracil-5)-methyltransferase YP_003942489.1 PFAM: Protein of unknown function DUF2593; KEGG: kva:Kvar_3488 protein of unknown function DUF2593 YP_003942490.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kva:Kvar_3489 binding-protein-dependent transport systems inner membrane component YP_003942491.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: enc:ECL_02817 putrescine transporter permease component YP_003942492.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; KEGG: enc:ECL_02818 putrescine transporter ATP-binding component; SMART: AAA ATPase YP_003942493.1 PFAM: extracellular solute-binding protein family 1; KEGG: cko:CKO_02253 putrescine transporter subunit: periplasmic-binding component of ABC superfamily YP_003942494.1 PFAM: Sensory transduction regulator, putative; KEGG: kva:Kvar_3493 sensory transduction regulator, putative YP_003942495.1 manually curated; TIGRFAM: alpha-L-glutamate ligase, RimK family; KEGG: cko:CKO_02255 hypothetical protein; PFAM: RimK domain protein ATP-grasp YP_003942496.1 KEGG: ent:Ent638_1365 nitroreductase A; manually curated; PFAM: nitroreductase YP_003942497.1 PFAM: protein of unknown function DUF1418; KEGG: stt:t2023 hypothetical protein YP_003942498.1 KEGG: kva:Kvar_3497 glutaredoxin, GrxA family; TIGRFAM: glutaredoxin, GrxA family; PFAM: glutaredoxin YP_003942499.1 KEGG: ses:SARI_02059 hypothetical protein YP_003942500.1 KEGG: cko:CKO_02260 hypothetical protein; TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain-containing protein; TrkA-C domain protein YP_003942501.1 PFAM: regulatory protein TetR; KEGG: kpe:KPK_3687 transcriptional regulator, TetR family YP_003942502.1 PFAM: major facilitator superfamily MFS_1; KEGG: efe:EFER_0986 putative transporter YP_003942503.1 KEGG: kpu:KP1_1837 putative hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003942504.1 PFAM: major facilitator superfamily MFS_1; KEGG: kpu:KP1_1836 multidrug/chloramphenicol efflux transport protein YP_003942505.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: enc:ECL_02877 undecaprenyl pyrophosphate phosphatase; SMART: phosphoesterase PA-phosphatase related YP_003942506.1 KEGG: kpu:KP1_1833 DNA-binding transcriptional repressor DeoR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003942507.1 KEGG: kpn:KPN_00871 D-alanyl-D-alanine carboxypeptidase fraction C; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein YP_003942508.1 PFAM: Glutathione S-transferase domain; KEGG: stt:t2034 glutathione S-transferase family protein YP_003942509.1 KEGG: kva:Kvar_3509 biofilm formation regulatory protein BssR YP_003942510.1 manually curated; KEGG: enc:ECL_02022 hypothetical protein YP_003942511.1 manually curated; KEGG: yen:YE2440 beta-lactamase; PFAM: beta-lactamase YP_003942512.1 PFAM: regulatory protein LysR; KEGG: enc:ECL_03082 hypothetical protein YP_003942514.1 TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: kpu:KP1_1825 ribosomal protein S12 methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB YP_003942515.1 KEGG: kpe:KPK_3701 glutathione ABC transporter, permease protein GsiD; manually curated; PFAM: binding-protein-dependent transport systems inner membrane component YP_003942516.1 KEGG: kpu:KP1_1823 putative ABC transport system periplasmic binding component; manually curated; PFAM: binding-protein-dependent transport systems inner membrane component YP_003942517.1 PFAM: extracellular solute-binding protein family 5; KEGG: kpe:KPK_3703 glutathione ABC transporter, periplasmic glutathione-binding protein YP_003942518.1 KEGG: cko:CKO_02280 glutathione transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_003942519.1 KEGG: kpu:KP1_1820 L-asparaginase; PFAM: peptidase T2 asparaginase 2 YP_003942520.1 KEGG: set:SEN0792 molybdopterin biosynthesis protein MoeA; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV YP_003942521.1 KEGG: kpn:KPN_00859 molybdopterin biosynthesis protein MoeB; TIGRFAM: molybdopterin synthase sulfurylase MoeB; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein YP_003942522.1 TIGRFAM: transaldolase; KEGG: enc:ECL_02894 fructose-6-phosphate aldolase; PFAM: Transaldolase YP_003942523.1 TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: enc:ECL_02895 glycyl-radical activating family protein; PFAM: Radical SAM domain protein YP_003942524.1 TIGRFAM: pyruvate formate-lyase; KEGG: sfv:SFV_0806 putative formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical YP_003942525.1 KEGG: kpn:KPN_00856 hypothetical protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003942526.1 PFAM: protein of unknown function DUF1479; KEGG: eum:ECUMN_1009 hypothetical protein YP_003942527.1 KEGG: kpu:KP1_1813 putative periplasmic binding protein/LacI transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003942528.1 PFAM: major facilitator superfamily MFS_1; KEGG: cko:CKO_02296 hypothetical protein YP_003942529.1 KEGG: enc:ECL_02902 glucan 1,3-alpha-glucosidase; PFAM: glycoside hydrolase family 31 YP_003942530.1 KEGG: enc:ECL_02903 putative transport system ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942531.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: kpu:KP1_1808 hypothetical protein YP_003942532.1 KEGG: hypothetical protein YP_003942533.1 KEGG: enc:ECL_02905 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003942534.1 PFAM: glycoside hydrolase family 1; KEGG: kva:Kvar_3531 glycoside hydrolase family 1 YP_003942535.1 PFAM: Citrate transporter; KEGG: kpu:KP1_1805 putative transport protein YP_003942536.1 KEGG: enc:ECL_02913 manganese transport regulator MntR; PFAM: iron dependent repressor; SMART: iron dependent repressor YP_003942537.1 KEGG: ent:Ent638_1303 hypothetical protein YP_003942538.1 PFAM: sulfatase; KEGG: enc:ECL_02915 sulfatase YP_003942539.1 PFAM: virulence-related outer membrane protein; KEGG: ses:SARI_02093 outer membrane protein X YP_003942540.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cko:CKO_02307 threonine and homoserine efflux system YP_003942541.1 PFAM: Ferritin Dps family protein; KEGG: cko:CKO_02310 DNA starvation/stationary phase protection protein Dps YP_003942542.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: cko:CKO_02311 glutamine ABC transporter periplasmic protein; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor YP_003942543.1 KEGG: enc:ECL_02921 glutamine ABC transporter permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003942544.1 KEGG: sbc:SbBS512_E2539 glutamine ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942545.1 KEGG: cko:CKO_02316 putative SAM-dependent methyltransferase; PFAM: protein of unknown function DUF890 YP_003942546.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: kva:Kvar_3545 flavin reductase domain protein FMN-binding protein YP_003942547.1 PFAM: protein of unknown function DUF1471; KEGG: ecy:ECSE_0862 hypothetical protein YP_003942548.1 PFAM: protein of unknown function DUF1471; KEGG: eok:G2583_1030 hypothetical protein YP_003942549.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: ecz:ECS88_4089 putative xanthine/uracil permease YP_003942550.1 TIGRFAM: adenine deaminase; KEGG: eok:G2583_4456 adenine deaminase; PFAM: amidohydrolase YP_003942551.1 PFAM: Glycosyl transferase, family 3-like; KEGG: cko:CKO_02322 glycosyl transferase family protein YP_003942552.1 PFAM: Fimbrial protein domain-containing protein; KEGG: enc:ECL_02930 hypothetical protein YP_003942553.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: cko:CKO_02324 hypothetical protein YP_003942554.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: ctu:Ctu_14010 outer membrane usher protein LpfC YP_003942555.1 PFAM: Fimbrial protein domain-containing protein; KEGG: cko:CKO_02327 hypothetical protein YP_003942556.1 PFAM: Fimbrial protein domain-containing protein; KEGG: cko:CKO_02328 hypothetical protein YP_003942557.1 SMART: helicase c2; DEAD-like helicase ; Helicase-like, DEXD box c2 type; KEGG: cko:CKO_02329 ATP-dependent DNA helicase DinG YP_003942558.1 KEGG: eoh:ECO103_0833 ATP-dependent RNA helicase RhlE; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003942559.1 PFAM: Transcriptional regulator TetR ; regulatory protein TetR; KEGG: cro:ROD_07961 TetR-family transcriptional regulator YP_003942560.1 PFAM: secretion protein HlyD family protein; KEGG: enc:ECL_02940 putative HlyD family secretion protein YP_003942561.1 KEGG: cko:CKO_02333 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942562.1 PFAM: ABC-2 type transporter; KEGG: set:SEN0762 putative inner membrane protein YP_003942563.1 PFAM: ABC-2 type transporter; KEGG: ent:Ent638_1283 ABC-2 type transporter YP_003942564.1 KEGG: kva:Kvar_3562 hypothetical protein YP_003942565.1 PFAM: protein of unknown function UPF0005; KEGG: set:SEN0753 hypothetical protein YP_003942566.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: kpe:KPK_3758 molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_003942567.1 KEGG: kva:Kvar_3568 molybdopterin converting factor, subunit 1; TIGRFAM: molybdopterin converting factor, subunit 1; MoaD family protein; PFAM: thiamineS protein YP_003942568.1 KEGG: enc:ECL_02951 molybdenum cofactor biosynthesis protein C; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC YP_003942569.1 KEGG: cko:CKO_02344 hypothetical protein; TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain YP_003942570.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; KEGG: kpn:KPN_00810 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_003942571.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: enc:ECL_02954 hypothetical protein YP_003942572.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: kva:Kvar_3573 sulfatase YP_003942573.1 KEGG: kpu:KP1_1760 DNA-binding transcriptional regulator BasR; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003942574.1 KEGG: kva:Kvar_3575 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003942575.1 TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: cko:CKO_02348 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein YP_003942576.1 manually curated; KEGG: spq:SPAB_02721 hypothetical protein YP_003942577.1 TIGRFAM: dethiobiotin synthase; KEGG: cko:CKO_02350 dithiobiotin synthetase YP_003942578.1 KEGG: cko:CKO_02351 biotin biosynthesis protein BioC; TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11 YP_003942579.1 TIGRFAM: 8-amino-7-oxononanoate synthase; KEGG: ecy:ECSE_0829 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II YP_003942580.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: cro:ROD_07761 biotin synthetase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein YP_003942581.1 KEGG: kpu:KP1_1749 adenosylmethionine--8-amino-7-oxononanoate transaminase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III YP_003942582.1 PFAM: PEBP family protein; KEGG: kva:Kvar_3584 PEBP family protein YP_003942583.1 PFAM: amino acid permease-associated region; KEGG: kpn:KPN_00797 putative amino acid permease YP_003942584.1 TIGRFAM: histidine ammonia-lyase; KEGG: kpn:KPN_00796 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase YP_003942585.1 TIGRFAM: urocanate hydratase; KEGG: kpu:KP1_1745 urocanate hydratase; PFAM: Urocanase YP_003942586.1 TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; KEGG: cko:CKO_02358 hypothetical protein; SMART: regulatory protein GntR HTH YP_003942587.1 TIGRFAM: formiminoglutamase; KEGG: kva:Kvar_3589 formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase YP_003942588.1 TIGRFAM: imidazolonepropionase; KEGG: kpu:KP1_1742 imidazolonepropionase; PFAM: amidohydrolase YP_003942589.1 PFAM: Pectinesterase; KEGG: enc:ECL_02969 putative pectinesterase YP_003942590.1 PFAM: Thiol-activated cytolysin; KEGG: cbk:CLL_A2808 tetanolysin O YP_003942591.1 KEGG: pat:Patl_1862 TonB-dependent receptor YP_003942592.1 KEGG: cko:CKO_02368 6-phosphogluconolactonase YP_003942593.1 KEGG: efe:EFER_2343 phosphotransferase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003942594.1 TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain-containing protein; KEGG: seh:SeHA_C0910 molybdate transporter ATP-binding protein; SMART: AAA ATPase YP_003942595.1 KEGG: enc:ECL_02973 molybdate ABC transporter permease protein; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003942596.1 KEGG: cko:CKO_02372 molybdate transporter periplasmic protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_003942597.1 KEGG: enc:ECL_02252 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein YP_003942598.1 PFAM: Protein of unknown function DUF2592; KEGG: kva:Kvar_3611 protein of unknown function DUF2592 YP_003942599.1 KEGG: cko:CKO_02374 DNA-binding transcriptional regulator ModE; TIGRFAM: molybdate transport repressor, ModE; PFAM: TOBE domain-containing protein; regulatory protein LysR YP_003942600.1 KEGG: kpu:KP1_1718 putative molybdenum transport ATP-binding protein ModF; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942601.1 KEGG: sbc:SbBS512_E0680 UDP-galactose-4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_003942602.1 TIGRFAM: galactose-1-phosphate uridylyltransferase; KEGG: ecc:c0834 galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_003942603.1 KEGG: kpu:KP1_1715 galactokinase; TIGRFAM: galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase domain protein YP_003942604.1 TIGRFAM: galactose mutarotase; KEGG: galM; aldose 1-epimerase; PFAM: Aldose 1-epimerase YP_003942605.1 TIGRFAM: phosphoglycerate mutase 1 family; KEGG: enc:ECL_02982 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; PFAM: Phosphoglycerate mutase YP_003942606.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: enc:ECL_02983 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003942607.1 KEGG: ent:Ent638_1243 zinc transporter ZitB; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_003942608.1 TIGRFAM: quinolinate synthetase complex, A subunit; KEGG: enc:ECL_02987 quinolinate synthetase; PFAM: Quinolinate synthetase A YP_003942609.1 TIGRFAM: tol-pal system protein YbgF; KEGG: ent:Ent638_1240 tol-pal system protein YbgF YP_003942610.1 KEGG: enc:ECL_02989 peptidoglycan-associated outer membrane lipoprotein; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein YP_003942611.1 KEGG: cko:CKO_02400 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain-containing protein; WD40-like beta Propeller containing protein YP_003942612.1 KEGG: kpn:KPN_00743 cell envelope integrity inner membrane protein TolA; TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA YP_003942613.1 KEGG: enc:ECL_02993 colicin uptake protein TolR; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR YP_003942614.1 KEGG: kva:Kvar_3629 protein TolQ; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_003942615.1 KEGG: kva:Kvar_3630 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein YP_003942616.1 KEGG: enc:ECL_02996 hypothetical protein; TIGRFAM: cyd operon protein YbgE; PFAM: Cyd operon protein YbgE YP_003942617.1 KEGG: cro:ROD_07282 hypothetical protein; TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein YP_003942618.1 KEGG: enc:ECL_02998 cytochrome bd-I oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_003942619.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: enc:ECL_02999 cytochrome bd-I oxidase subunit I YP_003942620.1 PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; KEGG: enc:ECL_03000 alpha-mannosidase YP_003942621.1 KEGG: cko:CKO_02414 PTS system 2-O-A-mannosyl-D-glycerate specific transporter subunit IIABC; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC YP_003942622.1 KEGG: cko:CKO_02415 DNA-binding transcriptional repressor MngR; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003942623.1 PFAM: Oligogalacturonate-specific porin; KEGG: kva:Kvar_4640 oligogalacturonate-specific porin YP_003942624.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_01039 hexuronate transporter YP_003942625.1 KEGG: kva:Kvar_1857 hypothetical protein YP_003942626.1 PFAM: Heparinase II/III family protein; KEGG: ypy:YPK_3711 heparinase II/III family protein YP_003942627.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: enc:ECL_04168 hypothetical protein YP_003942628.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; KEGG: enc:ECL_03003 succinyl-CoA synthetase alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding domain protein YP_003942629.1 TIGRFAM: succinyl-CoA synthetase, beta subunit; KEGG: enc:ECL_03004 succinyl-CoA synthetase, beta subunit; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase YP_003942630.1 KEGG: cko:CKO_02433 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein YP_003942631.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; KEGG: kpu:KP1_1687 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component YP_003942632.1 KEGG: enc:ECL_03008 succinate dehydrogenase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_003942633.1 KEGG: enc:ECL_03009 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003942634.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: cro:ROD_07201 succinate dehydrogenase hydrophobic membrane anchor protein YP_003942635.1 KEGG: kva:Kvar_3643 succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit YP_003942636.1 KEGG: cko:CKO_02439 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_003942637.1 PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: eum:ECUMN_0792 endonuclease VIII YP_003942638.1 TIGRFAM: pyrrolidone-carboxylate peptidase; KEGG: cko:CKO_02452 pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I YP_003942639.1 PFAM: protein of unknown function DUF979; KEGG: cko:CKO_02453 hypothetical protein YP_003942640.1 PFAM: protein of unknown function DUF969; KEGG: cro:ROD_07141 hypothetical protein YP_003942641.1 PFAM: LamB/YcsF family protein; KEGG: cko:CKO_02455 LamB/YcsF family protein YP_003942642.1 SMART: Allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; KEGG: cko:CKO_02456 hypothetical protein; PFAM: Allophanate hydrolase subunit 2 YP_003942643.1 KEGG: ybgJ; uncharacterized protein YbgJ; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1 YP_003942644.1 PFAM: protein of unknown function DUF34; KEGG: kpe:KPK_3849 putative hydrolase-oxidase YP_003942645.1 KEGG: efe:EFER_2408 putative transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region YP_003942646.1 KEGG: eum:ECUMN_0786 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein YP_003942647.1 PFAM: protein of unknown function DUF1722; protein of unknown function DUF523; KEGG: esa:ESA_02639 hypothetical protein YP_003942648.1 PFAM: Protein of unknown function DUF2517; KEGG: ent:Ent638_1211 putative periplasmic protein YP_003942649.1 TIGRFAM: potassium-transporting ATPase, A subunit; KEGG: ent:Ent638_1210 potassium-transporting ATPase subunit A; PFAM: K transporting ATPase A subunit YP_003942650.1 KEGG: ent:Ent638_1209 potassium-transporting ATPase subunit B; TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase YP_003942651.1 TIGRFAM: potassium-transporting ATPase, C subunit; KEGG: enc:ECL_03022 potassium-transporting ATPase subunit C; PFAM: K transporting ATPase KdpC subunit YP_003942652.1 KEGG: ent:Ent638_1207 sensor protein KdpD; PFAM: Osmosensitive K channel His kinase sensor; UspA domain-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003942653.1 KEGG: enc:ECL_03024 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003942654.1 KEGG: cko:CKO_02469 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein YP_003942655.1 KEGG: enc:ECL_03026 putrescine transporter; TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region YP_003942656.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: see:SNSL254_A0759 putative 5-nitroimidazole antibiotic resistance YP_003942657.1 KEGG: ent:Ent638_1203 phosphoglucomutase; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase YP_003942658.1 PFAM: SeqA family protein; KEGG: kva:Kvar_3661 SeqA family protein YP_003942659.1 PFAM: alpha/beta hydrolase fold; KEGG: cko:CKO_02473 hypothetical protein YP_003942660.1 KEGG: cko:CKO_02474 LexA regulated protein YP_003942661.1 KEGG: kva:Kvar_3664 flavodoxin; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase YP_003942662.1 PFAM: ferric-uptake regulator; KEGG: set:SEN0657 ferric uptake regulator YP_003942663.1 KEGG: kva:Kvar_3670 putative lipoprotein YP_003942664.1 PFAM: outer membrane porin; KEGG: kpe:KPK_3870 outer membrane porin, OprD family YP_003942665.1 KEGG: enc:ECL_03035 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain YP_003942666.1 TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PTS system, glucose subfamily, IIA subunit; KEGG: ent:Ent638_1194 PTS system, N-acetylglucosamine-specific IIBC subunit; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; sugar-specific permease EIIA 1 domain YP_003942667.1 KEGG: set:SEN0648 glucosamine-6-phosphate deaminase; TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase YP_003942668.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: kpu:KP1_1648 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_003942669.1 PFAM: ROK family protein; regulatory protein MarR; KEGG: ent:Ent638_1191 ROK family protein YP_003942670.1 KEGG: ent:Ent638_1190 UMP phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003942671.1 KEGG: kpu:KP1_1645 asparagine synthetase B; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003942672.1 KEGG: pct:PC1_3515 hypothetical protein YP_003942673.1 KEGG: ent:Ent638_1188 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase YP_003942674.1 TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: ecz:ECS88_0696 (dimethylallyl)adenosine tRNA methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB YP_003942675.1 PFAM: PhoH family protein; KEGG: set:SEN0638 PhoH-like ATP-binding protein YP_003942676.1 PFAM: protein of unknown function UPF0054; KEGG: enc:ECL_03045 putative metalloprotease YP_003942677.1 PFAM: transporter-associated region; CBS domain containing protein; KEGG: cko:CKO_02505 hypothetical protein YP_003942678.1 KEGG: kpe:KPK_3891 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003942679.1 KEGG: kpu:KP1_1638 glutamate and aspartate transporter subunit; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003942680.1 KEGG: enc:ECL_03049 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003942681.1 KEGG: enc:ECL_03050 glutamate/aspartate transport system permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003942682.1 KEGG: enc:ECL_03051 glutamate/aspartate transport ATP-binding protein GltL; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942683.1 KEGG: sfv:SFV_0675 ribonucleoside hydrolase 1; PFAM: Inosine/uridine-preferring nucleoside hydrolase YP_003942684.1 PFAM: protein of unknown function DUF1451; KEGG: enc:ECL_03053 hypothetical protein YP_003942685.1 KEGG: cko:CKO_02514 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase YP_003942686.1 PFAM: Rare lipoprotein B; KEGG: kva:Kvar_3693 rare lipoprotein B YP_003942687.1 TIGRFAM: DNA polymerase III, delta subunit; KEGG: ecz:ECS88_0682 DNA polymerase III subunit delta; PFAM: DNA polymerase III delta YP_003942688.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: cko:CKO_02517 nicotinic acid mononucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_003942689.1 KEGG: ses:SARI_02290 hypothetical protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein YP_003942690.1 PFAM: protein of unknown function DUF163; KEGG: kva:Kvar_3698 protein of unknown function DUF163 YP_003942691.1 TIGRFAM: penicillin-binding protein 2; KEGG: enc:ECL_03060 hypothetical protein; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003942692.1 KEGG: kva:Kvar_3700 rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein YP_003942693.1 KEGG: kva:Kvar_3701 rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein YP_003942694.1 KEGG: kpu:KP1_1619 D-alanyl-D-alanine carboxypeptidase fraction A; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein YP_003942695.1 PFAM: protein of unknown function DUF493; KEGG: enc:ECL_03064 hypothetical protein YP_003942696.1 TIGRFAM: lipoate-protein ligase B; KEGG: kva:Kvar_3704 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase YP_003942697.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_02529 putative DNA-binding transcriptional regulator YP_003942698.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lipoic acid synthetase; KEGG: esa:ESA_02700 lipoyl synthase; PFAM: Radical SAM domain protein YP_003942699.1 KEGG: enc:ECL_03068 twin arginine translocase protein E; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_003942700.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: kpe:KPK_3915 hydrolase, carbon-nitrogen family YP_003942701.1 KEGG: kpu:KP1_1612 camphor resistance protein CrcB; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein YP_003942702.1 KEGG: cro:ROD_06381 cold shock-like protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_003942703.1 PFAM: Antimicrobial peptide resistance and lipid A acylation PagP; KEGG: kpn:KPN_00655 palmitoyl transferase YP_003942704.1 KEGG: efe:EFER_2482 C4-dicarboxylate transporter DcuC; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like YP_003942705.1 SMART: Citrate lyase ligase domain protein; TIGRFAM: citrate lyase ligase; cytidyltransferase-related domain protein; KEGG: cro:ROD_06331 citrate (pro-3S)-lyase] ligase; PFAM: Citrate lyase ligase domain protein; GCN5-related N-acetyltransferase YP_003942706.1 KEGG: cko:CKO_02547 hypothetical protein; TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter YP_003942707.1 KEGG: enc:ECL_03075 ribonuclease I YP_003942708.1 KEGG: kva:Kvar_3714 GreA/GreB family elongation factor YP_003942709.1 PFAM: UspA domain-containing protein; KEGG: kva:Kvar_3715 UspA domain protein YP_003942710.1 KEGG: kpu:KP1_1603 alkyl hydroperoxide reductase FAD/NAD(P)-binding subunit; TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003942711.1 TIGRFAM: peroxiredoxin; KEGG: enc:ECL_03081 alkyl hydroperoxide reductase subunit C; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like YP_003942712.1 KEGG: kpu:KP1_1600 periplasmic disulfide isomerase/thiol-disulphide oxidase YP_003942713.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cro:ROD_06141 transcriptional regulator YP_003942714.1 PFAM: PP-loop domain protein; KEGG: kva:Kvar_3720 PP-loop domain protein YP_003942715.1 KEGG: enc:ECL_03084 hypothetical protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003942716.1 PFAM: aminotransferase class I and II; KEGG: kva:Kvar_3722 aminotransferase class I and II YP_003942717.1 KEGG: enc:ECL_03086 methylthioribulose-1-phosphate dehydratase; TIGRFAM: methylthioribulose-1-phosphate dehydratase; PFAM: class II aldolase/adducin family protein YP_003942718.1 TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; KEGG: enc:ECL_03087 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003942719.1 KEGG: cko:CKO_03973 hypothetical protein; PFAM: Acireductone dioxygenase ARD YP_003942720.1 KEGG: plu:plu2707 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003942721.1 KEGG: pmr:PMI0960 phage protein YP_003942722.1 TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: cko:CKO_03974 hypothetical protein; PFAM: initiation factor 2B related YP_003942723.1 KEGG: kva:Kvar_3742 5-methylthioribose kinase; TIGRFAM: 5-methylthioribose kinase YP_003942724.1 PFAM: plasmid stabilization system; KEGG: kpu:KP1_1566 hypothetical protein YP_003942725.1 KEGG: kpu:KP1_1565 putative transcriptional regulators; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003942726.1 PFAM: protein of unknown function DUF466; KEGG: kva:Kvar_3751 protein of unknown function DUF466 YP_003942727.1 PFAM: carbon starvation protein CstA; KEGG: enc:ECL_03102 carbon starvation protein CstA YP_003942728.1 KEGG: ent:Ent638_1129 hypothetical protein; manually curated; PFAM: thioesterase superfamily protein YP_003942729.1 KEGG: enc:ECL_03105 2,3-dihydroxybenzoate-2,3-dehydrogenase; manually curated; PFAM: short-chain dehydrogenase/reductase SDR YP_003942730.1 KEGG: kpn:KPN_00613 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase; PFAM: isochorismatase hydrolase; phosphopantetheine-binding YP_003942731.1 KEGG: kva:Kvar_3756 2,3-dihydroxybenzoate-AMP ligase; TIGRFAM: 2,3-dihydroxybenzoate-AMP ligase; PFAM: AMP-dependent synthetase and ligase YP_003942732.1 KEGG: kpn:KPN_00611 isochorismate synthase; TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like YP_003942733.1 PFAM: periplasmic binding protein; KEGG: sfv:SFV_0540 iron-enterobactin transporter periplasmic binding protein YP_003942734.1 KEGG: kva:Kvar_3759 major facilitator superfamily MFS_1; manually curated; PFAM: major facilitator superfamily MFS_1 YP_003942735.1 KEGG: kpu:KP1_1553 iron-enterobactin transporter membrane protein; manually curated; PFAM: transport system permease protein YP_003942736.1 PFAM: transport system permease protein; KEGG: cro:ROD_05981 ferric enterobactin transport protein YP_003942737.1 KEGG: efe:EFER_2506 iron-enterobactin transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942738.1 KEGG: kpe:KPK_3973 enterobactin synthase subunit F; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase YP_003942739.1 PFAM: MbtH domain protein; KEGG: cro:ROD_05951 enterochelin esterase (ferric enterobactin esterase) YP_003942740.1 PFAM: esterase; KEGG: cko:CKO_02577 enterobactin/ferric enterobactin esterase YP_003942741.1 KEGG: cro:ROD_05931 ferrienterobactin TonB-dependent receptor (enterobactin outer-membrane receptor); TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_003942742.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sec:SC0615 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex YP_003942743.1 PFAM: extracellular solute-binding protein family 5; KEGG: ent:Ent638_1105 extracellular solute-binding protein YP_003942744.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpu:KP1_1525 putative ABC transport system permease component YP_003942745.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ent:Ent638_1103 binding-protein-dependent transport systems inner membrane component YP_003942746.1 KEGG: ent:Ent638_1102 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942747.1 KEGG: kva:Kvar_3795 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942748.1 KEGG: kva:Kvar_3815 ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase YP_003942749.1 KEGG: kpu:KP1_1494 hypothetical protein YP_003942750.1 PFAM: protein of unknown function DUF1158; KEGG: enc:ECL_03152 hypothetical protein YP_003942751.1 KEGG: kva:Kvar_3818 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003942752.1 KEGG: cko:CKO_02592 hypothetical protein YP_003942753.1 PFAM: regulatory protein TetR; KEGG: kpu:KP1_1490 putative regulatory protein YP_003942754.1 KEGG: enc:ECL_03156 hypothetical protein YP_003942755.1 KEGG: cko:CKO_02596 dihydropteridine reductase; PFAM: nitroreductase YP_003942756.1 KEGG: ent:Ent638_1073 putative integral membrane protein YP_003942757.1 SMART: helix-turn-helix domain protein; KEGG: cko:CKO_02597 hypothetical protein YP_003942758.1 PFAM: major facilitator superfamily MFS_1; KEGG: kpu:KP1_1476 probable major facilitator superfamily (MFS) transporter YP_003942759.1 PFAM: amino acid permease-associated region; KEGG: sek:SSPA2008 phenylalanine transporter YP_003942760.1 KEGG: spe:Spro_2511 hypothetical protein YP_003942761.1 PFAM: surface antigen (D15); KEGG: spe:Spro_2510 putative outer membrane protein YP_003942762.1 KEGG: kpe:KPK_2561 putative lipoprotein YP_003942763.1 PFAM: surface antigen (D15); KEGG: vfi:VF_2363 hypothetical protein YP_003942764.1 KEGG: dda:Dd703_3751 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_003942765.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pam:PANA_0339 hypothetical protein YP_003942766.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pam:PANA_0338 hypothetical protein YP_003942767.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: efe:EFER_2674 putative transcriptional regulator, LysR family YP_003942768.1 KEGG: kpu:KP1_1455 putative regulatory protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003942769.1 KEGG: bja:blr1267 hypothetical protein YP_003942770.1 KEGG: kpn:KPN_00531 hypothetical protein YP_003942771.1 PFAM: amino acid permease-associated region; KEGG: kpu:KP1_1459 putative amino acid/amine transport protein YP_003942772.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: kva:Kvar_3839 protein of unknown function DUF861 cupin_3 YP_003942773.1 PFAM: FAD dependent oxidoreductase; KEGG: kpu:KP1_1462 hypothetical protein YP_003942774.1 KEGG: pmy:Pmen_2228 chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter YP_003942775.1 KEGG: kva:Kvar_1622 hypothetical protein YP_003942776.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: kpe:KPK_1732 diguanylate cyclase/cyclic diguanylate phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein YP_003942777.1 PFAM: aldo/keto reductase; KEGG: rpt:Rpal_1849 aldo/keto reductase YP_003942778.1 PFAM: Peptidase M23; KEGG: ecl:EcolC_3418 peptidase M23B YP_003942779.1 KEGG: ecl:EcolC_3422 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein YP_003942780.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: kpn:KPN_pKPN3p05947 copper/silver efflux system membrane fusion protein CusB YP_003942781.1 KEGG: enc:ECL_01961 Cu(I)/Ag(I) efflux system periplasmic protein CusF YP_003942782.1 KEGG: kpn:KPN_pKPN3p05949 copper/silver efflux system outer membrane protein CusC; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_003942783.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: cko:CKO_02615 DNA-binding transcriptional activator CusR; SMART: response regulator receiver YP_003942784.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: shn:Shewana3_4295 sensor kinase CusS; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003942785.1 KEGG: ctu:Ctu_3p00490 probable copper-binding protein PcoE YP_003942786.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: efe:EFER_1808 hypothetical protein; SMART: GGDEF domain containing protein YP_003942787.1 PFAM: Fels-1 Propage domain protein; KEGG: bpl:BURPS1106A_1585 putative prophage protein YP_003942788.1 KEGG: see:SNSL254_A3196 L-1,2-propanediol oxidoreductase; TIGRFAM: lactaldehyde reductase; PFAM: iron-containing alcohol dehydrogenase YP_003942789.1 KEGG: tau:Tola_1483 MtN3 and saliva related transmembrane protein YP_003942790.1 PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: str:Sterm_4045 xylose isomerase domain protein TIM barrel YP_003942791.1 KEGG: cpe:CPE0196 PTS arbutin-like enzyme IIBC component; TIGRFAM: PTS system, alpha-glucoside-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003942792.1 PFAM: glycosyl hydrolase family 88; KEGG: cro:ROD_48241 hypothetical protein YP_003942793.1 KEGG: pct:PC1_3525 hypothetical protein YP_003942794.1 PFAM: Oligogalacturonate-specific porin; KEGG: ppf:Pput_1876 oligogalacturonate-specific porin YP_003942795.1 KEGG: ses:SARI_00408 hypothetical protein YP_003942796.1 KEGG: ent:Ent638_1885 beta-lactamase domain-containing protein YP_003942797.1 KEGG: eca:ECA2978 hypothetical protein YP_003942798.1 KEGG: eca:ECA2977 hypothetical protein YP_003942799.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA1602 LysR family transcriptional regulator YP_003942800.1 KEGG: ecp:ECP_4361 DNA-binding transcriptional regulator MelR; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003942801.1 PFAM: glycoside hydrolase family 4; KEGG: eoh:ECO103_4871 alpha-galactosidase MelA, NAD(P)-binding YP_003942802.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sfv:SFV_4110 melibiose:sodium symporter YP_003942803.1 KEGG: eic:NT01EI_1473 amidohydrolase, putative; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003942804.1 KEGG: eic:NT01EI_1474 hypothetical protein; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like YP_003942805.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: etr:ETAE_1356 DNA-binding transcriptional activator YP_003942806.1 KEGG: enc:ECL_01285 response regulator receiver protein YP_003942807.1 KEGG: cko:CKO_02622 transcriptional regulator FimZ; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver YP_003942808.1 PFAM: Fimbrial protein domain-containing protein; KEGG: ent:Ent638_0992 putative fimbrial protein YP_003942809.1 KEGG: ent:Ent638_0991 minor fimbrial subunit YP_003942810.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: enc:ECL_01281 outer membrane usher protein YP_003942811.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ent:Ent638_0989 pili assembly chaperone YP_003942812.1 PFAM: Fimbrial protein domain-containing protein; KEGG: enc:ECL_01279 fimbrial protein YP_003942813.1 PFAM: Fimbrial protein domain-containing protein; KEGG: enc:ECL_01278 major type 1 subunit fimbrin (pilin) YP_003942814.1 KEGG: kva:Kvar_3897 methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_003942815.1 KEGG: enc:ECL_01276 putative cytoplasmic protein YP_003942816.1 KEGG: enc:ECL_01275 PTS system, glucose-like IIB subunint; TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003942817.1 KEGG: enc:ECL_01274 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003942818.1 TIGRFAM: cysteinyl-tRNA synthetase; KEGG: kva:Kvar_3899 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR YP_003942819.1 KEGG: ecz:ECS88_0525 peptidyl-prolyl cis-trans isomerase B (rotamase B); PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type YP_003942820.1 KEGG: enc:ECL_01270 UDP-2,3-diacylglucosamine hydrolase; TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase YP_003942821.1 PFAM: protein of unknown function DUF1471; KEGG: enc:ECL_01269 hypothetical protein YP_003942822.1 KEGG: enc:ECL_01268 hypothetical protein YP_003942823.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: enc:ECL_01267 phosphoribosylaminoimidazole carboxylase catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_003942824.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: eck:EC55989_0536 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_003942825.1 KEGG: kpn:KPN_00476 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein YP_003942826.1 manually curated; KEGG: ent:Ent638_1400 hypothetical protein YP_003942827.1 KEGG: cko:CKO_02644 hypothetical protein; manually curated; PFAM: protein of unknown function DUF214 YP_003942828.1 KEGG: sbc:SbBS512_E0430 putative ABC transporter ATP-binding protein YbbA; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942829.1 KEGG: enc:ECL_01261 acyl-CoA thioesterase I; PFAM: lipolytic protein G-D-S-L family YP_003942830.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ssn:SSON_0482 short chain dehydrogenase YP_003942831.1 PFAM: Thioredoxin domain-containing protein; KEGG: enc:ECL_01259 putative thioredoxin-like protein YP_003942832.1 PFAM: Conserved hypothetical protein CHP00245; KEGG: enc:ECL_01258 putative ABC transport system permease protein YP_003942833.1 KEGG: enc:ECL_01257 putative ABC transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942834.1 KEGG: ses:SARI_02432 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein YP_003942835.1 PFAM: protein of unknown function DUF107; KEGG: set:SEN0481 hypothetical protein YP_003942836.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: ent:Ent638_0963 DNA-binding transcriptional regulator CueR; SMART: regulatory protein MerR YP_003942837.1 KEGG: cko:CKO_02665 copper exporting ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase YP_003942838.1 PFAM: GumN family protein; KEGG: kpu:KP1_1342 putative ligase YP_003942839.1 KEGG: ses:SARI_02438 hypothetical protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region YP_003942840.1 PFAM: 5'-Nucleotidase domain-containing protein; metallophosphoesterase; KEGG: enc:ECL_01250 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor YP_003942841.1 PFAM: major facilitator superfamily MFS_1; KEGG: enc:ECL_01249 major facilitator transporter YP_003942842.1 KEGG: cko:CKO_02671 putative cation:proton antiport protein; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein YP_003942843.1 KEGG: cko:CKO_02672 hypothetical protein; PFAM: PfkB domain protein YP_003942844.1 TIGRFAM: ferrochelatase; KEGG: cro:ROD_05331 ferrochelatase; PFAM: ferrochelatase YP_003942845.1 KEGG: enc:ECL_01245 adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain-containing protein YP_003942846.1 KEGG: cko:CKO_02676 heat shock protein 90; PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_003942847.1 TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain-containing protein; Zinc finger C4-type, RecR; KEGG: cko:CKO_02677 recombination protein RecR; SMART: Toprim sub domain-containing protein YP_003942848.1 PFAM: Uncharacterised protein family UPF0133; KEGG: ctu:Ctu_10780 hypothetical protein YP_003942849.1 TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; KEGG: cro:ROD_05281 Rfam:RF00382;DnaX;Score=69.97;positions 1 to 60; SMART: AAA ATPase YP_003942850.1 KEGG: esa:ESA_02801 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003942851.1 PFAM: protein of unknown function DUF454; KEGG: ent:Ent638_0948 hypothetical protein YP_003942852.1 PFAM: Primosomal replication priB and priC; KEGG: efe:EFER_2550 primosomal replication protein N'' YP_003942853.1 PFAM: Protein of unknown function DUF2496, YbaM-related; KEGG: cro:ROD_05241 hypothetical protein YP_003942854.1 PFAM: MscS Mechanosensitive ion channel; KEGG: enc:ECL_01236 potassium efflux protein KefA YP_003942855.1 PFAM: Tetracycline transcriptional repressor MAATS-type domain-containing protein; regulatory protein TetR; KEGG: ent:Ent638_0944 DNA-binding transcriptional repressor AcrR YP_003942856.1 manually curated; TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: kva:Kvar_3937 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_003942857.1 manually curated; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; KEGG: kva:Kvar_3938 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_003942858.1 PFAM: Biofilm formation regulator YbaJ; KEGG: cko:CKO_02690 hypothetical protein YP_003942859.1 PFAM: Haemolysin expression modulating family protein; KEGG: sdy:SDY_0459 hemolysin expression-modulating protein YP_003942860.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: enc:ECL_01230 maltose O-acetyltransferase YP_003942861.1 PFAM: Extracytoplasmic function sigma factor YlaC; KEGG: cro:ROD_05131 hypothetical protein YP_003942862.1 KEGG: kpe:KPK_4241 transcriptional regulator, GntR family/aminotransferase family protein; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH YP_003942863.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ent:Ent638_0936 GCN5-related N-acetyltransferase YP_003942864.1 KEGG: cko:CKO_02695 hypothetical protein; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36 YP_003942865.1 KEGG: ent:Ent638_0934 50S ribosomal protein L31 type B; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31 YP_003942866.1 KEGG: enc:ECL_01224 EAL domain-containing protein; PFAM: EAL domain protein; SMART: EAL domain protein YP_003942867.1 PFAM: protein of unknown function DUF1428; KEGG: cko:CKO_02698 hypothetical protein YP_003942868.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 42 domain 5 loop region; KEGG: enc:ECL_01221 beta galactosidase YP_003942869.1 KEGG: enc:ECL_01220 lac repressor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003942870.1 PFAM: protein of unknown function DUF161; KEGG: ent:Ent638_0926 hypothetical protein YP_003942871.1 KEGG: kpu:KP1_1294 putative GntR-family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH YP_003942872.1 KEGG: cko:CKO_02701 hypothetical protein YP_003942873.1 KEGG: kva:Kvar_3962 hypothetical protein YP_003942874.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: enc:ECL_03089 activator of HSP90 ATPase 1 family protein YP_003942875.1 KEGG: pam:PANA_1169 hypothetical protein YP_003942876.1 PFAM: protein of unknown function DUF156; KEGG: cro:ROD_29021 hypothetical protein YP_003942877.1 PFAM: high-affinity nickel-transporter; KEGG: eck:EC55989_2361 nickel/cobalt efflux protein RcnA YP_003942878.1 KEGG: kva:Kvar_3963 putative dTDP-glucose pyrophosphorylase YP_003942879.1 KEGG: enc:ECL_01215 methylated-DNA-[protein]-cysteine S-methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding YP_003942880.1 KEGG: ent:Ent638_0921 glycoprotein/polysaccharide metabolism YP_003942881.1 KEGG: enc:ECL_01213 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase YP_003942882.1 KEGG: kva:Kvar_3967 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter YP_003942883.1 PFAM: nitrogen regulatory protein P-II; KEGG: enc:ECL_01211 glutamine synthetase activity regulation protein YP_003942884.1 KEGG: sdy:SDY_0386 putative multidrug transporter membrane\ATP-binding components; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003942885.1 KEGG: ent:Ent638_0916 putative multidrug transporter membrane\ATP-binding components; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003942886.1 KEGG: kpu:KP1_1281 putative LRP-like transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_003942887.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: enc:ECL_01206 pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_003942888.1 KEGG: ent:Ent638_0913 Cof-like hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003942889.1 PFAM: extracellular solute-binding protein family 5; KEGG: kva:Kvar_3974 extracellular solute-binding protein family 5 YP_003942890.1 KEGG: efe:EFER_2573 queuosine biosynthesis protein QueC; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like YP_003942891.1 PFAM: thioesterase superfamily protein; KEGG: set:SEN0436 hypothetical protein YP_003942892.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: eum:ECUMN_0482 hypothetical protein YP_003942893.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: kva:Kvar_3978 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003942894.1 manually curated; PFAM: histone family protein DNA-binding protein; KEGG: kva:Kvar_3979 histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003942895.1 SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: set:SEN0432 DNA-binding ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein YP_003942896.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: cko:CKO_02722 ATP-dependent protease ATP-binding subunit ClpX; SMART: AAA ATPase YP_003942897.1 TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: enc:ECL_01195 ATP-dependent Clp protease, protease subunit; PFAM: peptidase S14 ClpP YP_003942898.1 KEGG: kva:Kvar_3983 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type YP_003942899.1 PFAM: BolA family protein; KEGG: enc:ECL_01193 transcriptional regulator BolA YP_003942900.1 PFAM: Uncharacterized lipoprotein; KEGG: kpu:KP1_1264 hypothetical protein YP_003942901.1 KEGG: sew:SeSA_A0503 muropeptide transporter; TIGRFAM: AmpG-related permease; PFAM: major facilitator superfamily MFS_1 YP_003942902.1 KEGG: enc:ECL_01189 cytochrome o ubiquinol oxidase subunit II; TIGRFAM: ubiquinol oxidase, subunit II; PFAM: COX aromatic rich domain protein; cytochrome c oxidase subunit II YP_003942903.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; KEGG: enc:ECL_01188 cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_003942904.1 KEGG: ssn:SSON_0413 cytochrome o ubiquinol oxidase subunit III; TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III YP_003942905.1 KEGG: ent:Ent638_0896 cytochrome o ubiquinol oxidase subunit IV; TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV YP_003942906.1 KEGG: enc:ECL_01185 protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_003942907.1 PFAM: major facilitator superfamily MFS_1; KEGG: enc:ECL_01184 major facilitator transporter YP_003942908.1 PFAM: RbsD or FucU transport; KEGG: etr:ETAE_0288 fucose dissimilation pathway protein FucU YP_003942909.1 KEGG: ebr:ECB_02654 L-fuculokinase; TIGRFAM: L-fuculokinase; PFAM: Carbohydrate kinase, FGGY-like YP_003942910.1 TIGRFAM: L-fucose isomerase; KEGG: cko:CKO_04161 L-fucose isomerase; PFAM: L-fucose isomerase-like-like; L-fucose isomerase _1 domain protein; L-fucose isomerase _2 domain protein YP_003942911.1 KEGG: cro:ROD_28461 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942912.1 PFAM: inner-membrane translocator; KEGG: ebr:ECB_02651 ribose transport system permease protein RbsC YP_003942913.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cro:ROD_28431 putative ABC transporter periplasmic binding protein YP_003942914.1 KEGG: ebd:ECBD_0925 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003942915.1 PFAM: class II aldolase/adducin family protein; KEGG: kpu:KP1_4431 L-fuculose phosphate aldolase YP_003942916.1 PFAM: protein of unknown function DUF520; KEGG: cko:CKO_02735 putative nucleotide-binding protein YP_003942917.1 TIGRFAM: 2-dehydropantoate 2-reductase; KEGG: cro:ROD_04741 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_003942918.1 KEGG: enc:ECL_01181 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain-containing protein YP_003942919.1 KEGG: kpu:KP1_1241 thiamine biosynthesis protein ThiI; TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: Thiamine biosynthesis protein-like; THUMP domain-containing protein YP_003942920.1 KEGG: esa:ESA_02880 exodeoxyribonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit YP_003942921.1 PFAM: Polyprenyl synthetase; KEGG: kva:Kvar_4008 polyprenyl synthetase YP_003942922.1 KEGG: kva:Kvar_4009 deoxyxylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain-containing protein YP_003942923.1 KEGG: cko:CKO_02743 phosphatidylglycerophosphatase A; PFAM: phosphatidylglycerophosphatase A YP_003942924.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: sek:SSPA2146 thiamine monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003942925.1 KEGG: kpu:KP1_1234 transcription antitermination protein NusB; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44 YP_003942926.1 KEGG: cko:CKO_02746 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_003942927.1 TIGRFAM: riboflavin biosynthesis protein RibD; KEGG: efe:EFER_2611 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding YP_003942928.1 PFAM: ATP-cone domain protein; KEGG: esa:ESA_02889 transcriptional regulator NrdR YP_003942929.1 KEGG: ent:Ent638_0880 hypothetical protein YP_003942930.1 PFAM: Nucleoside-specific channel-forming protein, Tsx-like; KEGG: kva:Kvar_4018 nucleoside-specific channel-forming protein, Tsx-like protein YP_003942931.1 KEGG: cro:ROD_04591 putative DeoR-family transcriptional regulator YP_003942932.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: kva:Kvar_4020 glyoxalase/bleomycin resistance protein/dioxygenase YP_003942933.1 KEGG: yen:YE2832 hypothetical protein YP_003942934.1 KEGG: cko:CKO_02752 preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_003942935.1 KEGG: ses:SARI_02518 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_003942936.1 KEGG: cro:ROD_04551 putative preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein YP_003942937.1 TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: cko:CKO_02755 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_003942938.1 KEGG: cro:ROD_04531 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_003942939.1 KEGG: ent:Ent638_0873 acyl carrier protein phosphodiesterase; PFAM: protein of unknown function DUF479 YP_003942940.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; KEGG: enc:ECL_01160 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003942941.1 PFAM: Amidohydrolase 3; KEGG: kva:Kvar_4033 amidohydrolase 3 YP_003942942.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: kva:Kvar_4034 antibiotic biosynthesis monooxygenase YP_003942943.1 PFAM: isochorismatase hydrolase; KEGG: kva:Kvar_4035 isochorismatase hydrolase YP_003942944.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cko:CKO_02763 hypothetical protein YP_003942945.1 KEGG: cko:CKO_02764 maltodextrin glucosidase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; SMART: alpha amylase catalytic sub domain YP_003942946.1 PFAM: amino acid permease-associated region; KEGG: set:SEN0383 putative proline-specific permease YP_003942947.1 KEGG: sea:SeAg_B0438 branched-chain amino acid transport system II carrier protein; TIGRFAM: branched-chain amino acid transport system II carrier protein; PFAM: branched-chain amino acid transport system II carrier protein YP_003942948.1 TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: ent:Ent638_0868 phosphate regulon sensor protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003942949.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: cko:CKO_02772 transcriptional regulator PhoB; SMART: response regulator receiver YP_003942950.1 KEGG: eck:EC55989_0406 exonuclease subunit SbcD; TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase YP_003942951.1 KEGG: cko:CKO_02774 exonuclease subunit SbcC; TIGRFAM: exonuclease SbcC; PFAM: SMC domain protein YP_003942952.1 PFAM: ROK family protein; KEGG: cko:CKO_02777 hypothetical protein YP_003942953.1 PFAM: exonuclease RdgC; KEGG: kva:Kvar_4045 putative exonuclease RdgC YP_003942954.1 PFAM: protein of unknown function DUF1255; KEGG: esa:ESA_02910 hypothetical protein YP_003942955.1 PFAM: AroM family protein; KEGG: enc:ECL_01148 hypothetical protein YP_003942956.1 KEGG: enc:ECL_01146 shikimate kinase II; PFAM: shikimate kinase YP_003942957.1 PFAM: Protein of unknown function DUF2076; KEGG: kva:Kvar_4050 putative periplasmic ligand-binding sensor protein YP_003942958.1 PFAM: protein of unknown function DUF188; KEGG: kpu:KP1_1189 hypothetical protein YP_003942959.1 TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: sfx:S0330 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_003942960.1 PFAM: PsiF repeat-containing protein; KEGG: sfx:S0251 hypothetical protein YP_003942961.1 PFAM: major facilitator superfamily MFS_1; KEGG: enc:ECL_01139 putative major facilitator transporter YP_003942962.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: kpe:KPK_4364 D-alanine--D-alanine ligase A; PFAM: D-alanine--D-alanine ligase domain protein YP_003942963.1 KEGG: ent:Ent638_0849 hypothetical protein YP_003942964.1 KEGG: ent:Ent638_0848 putative inner membrane protein YP_003942965.1 PFAM: protein of unknown function DUF1615; KEGG: kpn:KPN_00320 hypothetical protein YP_003942966.1 PFAM: SbmABacA family protein; KEGG: sei:SPC_0386 transport protein YP_003942967.1 PFAM: isochorismatase hydrolase; KEGG: kva:Kvar_4063 isochorismatase hydrolase YP_003942968.1 PFAM: beta-lactamase; KEGG: kpu:KP1_1176 beta-lactam binding protein AmpH YP_003942969.1 KEGG: enc:ECL_01130 putative DNA-binding transcriptional regulator YP_003942970.1 KEGG: enc:ECL_01128 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase YP_003942971.1 KEGG: kpn:KPN_00315 hypothetical protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003942972.1 KEGG: eok:G2583_0480 taurine dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA YP_003942973.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpn:KPN_00313 taurine transporter subunit YP_003942974.1 KEGG: kva:Kvar_4070 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942975.1 TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: enc:ECL_01123 sulfonate/nitrate/taurine transport system substrate-binding protein; SMART: extracellular solute-binding protein family 3 YP_003942976.1 KEGG: cko:CKO_00426 hypothetical protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Pertactin YP_003942977.1 KEGG: vha:VIBHAR_05112 hypothetical protein YP_003942978.1 PFAM: secretion protein HlyD family protein; KEGG: kpn:KPN_00517 putative secretion protein HlyD YP_003942979.1 KEGG: cko:CKO_01690 hypothetical protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor YP_003942980.1 KEGG: ent:Ent638_1778 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003942981.1 KEGG: kva:Kvar_4086 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003942982.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kva:Kvar_4087 binding-protein-dependent transport systems inner membrane component YP_003942983.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: gdj:Gdia_2710 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003942984.1 TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; KEGG: kpe:KPK_0616 dihydroxyacetone kinase subunit M; PFAM: PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; PEP-utilising protein domain protein; PEP-utilising protein mobile region YP_003942985.1 KEGG: kpu:KP1_4793 dihydroxyacetone kinase subunit DhaL; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase YP_003942986.1 TIGRFAM: dihydroxyacetone kinase, DhaK subunit; KEGG: cko:CKO_01212 dihydroxyacetone kinase subunit DhaK; PFAM: Dak kinase YP_003942987.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cko:CKO_04473 hypothetical protein YP_003942988.1 KEGG: kpu:KP1_4789 DNA-binding transcriptional regulator DhaR; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain containing protein YP_003942989.1 KEGG: cko:CKO_04369 hypothetical protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003942990.1 KEGG: yps:YPTB3177 putative exported protein YP_003942991.1 PFAM: SmpA/OmlA domain-containing protein; OmpA/MotB domain protein; KEGG: bmj:BMULJ_04992 putative OmpA family transmembrane protein YP_003942992.1 PFAM: YadA domain-containing protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: bcj:BCAM1115 putative haemagglutinin-related autotransporter protein YP_003942993.1 KEGG: spe:Spro_1114 beta-lactamase domain-containing protein YP_003942994.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: rec:RHECIAT_CH0001205 putative 4-oxalocrotonate tautomerase protein YP_003942995.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bte:BTH_II2115 LysR family transcriptional regulator YP_003942996.1 KEGG: seh:SeHA_C3252 3-hexulose-6-phosphate isomerase; PFAM: sugar isomerase (SIS) YP_003942997.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: seh:SeHA_C3253 3-oxoacyl-(acyl-carrier-protein) reductase YP_003942998.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: seh:SeHA_C3254 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_003942999.1 PFAM: PTS system Galactitol-specific IIC component; KEGG: seh:SeHA_C3255 PTS system galactitol-specific IIC component YP_003943000.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: ecl:EcolC_1646 phosphotransferase system lactose/cellobiose-specific IIB subunit YP_003943001.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: seh:SeHA_C3257 galactitol-specific phosphotransferase enzyme IIA component YP_003943002.1 PFAM: sugar-binding domain-containing protein; KEGG: seh:SeHA_C3263 DeoR family transcriptional regulator YP_003943003.1 PFAM: protein of unknown function DUF1302; KEGG: psa:PST_0615 hypothetical protein YP_003943004.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: enc:ECL_01075 gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase YP_003943005.1 TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: enc:ECL_01074 glutamate 5-kinase; SMART: PUA domain containing protein YP_003943006.1 PFAM: porin Gram-negative type; KEGG: esa:ESA_03112 hypothetical protein YP_003943007.1 PFAM: transcriptional regulator Crl; KEGG: set:SEN0302 DNA-binding transcriptional regulator Crl YP_003943008.1 KEGG: enc:ECL_01069 fermentation/respiration switch protein YP_003943009.1 KEGG: kva:Kvar_4137 xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003943010.1 TIGRFAM: aminoacyl-histidine dipeptidase; KEGG: enc:ECL_01067 aminoacyl-histidine dipeptidase; PFAM: peptidase dimerisation domain protein; peptidase M20 YP_003943011.1 KEGG: ent:Ent638_0762 DNA polymerase IV; PFAM: UMUC domain protein DNA-repair protein YP_003943012.1 PFAM: protein of unknown function DUF539; KEGG: kva:Kvar_4142 protein of unknown function DUF539 YP_003943013.1 KEGG: kpu:KP1_1089 Na(+)-translocating NADH-quinone reductase subunit F; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit F; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; Oxidoreductase FAD-binding domain protein YP_003943014.1 KEGG: kva:Kvar_4144 NADH:ubiquinone oxidoreductase, subunit E; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit YP_003943015.1 KEGG: kva:Kvar_4145 NADH:ubiquinone oxidoreductase, subunit D; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit YP_003943016.1 KEGG: enc:ECL_01059 Na+-translocating NADH-quinone reductase subunit C; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein YP_003943017.1 KEGG: kva:Kvar_4147 NADH:ubiquinone oxidoreductase, subunit B; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit B; PFAM: NQR2 and RnfD family protein YP_003943018.1 KEGG: kpe:KPK_4493 Na(+)-translocating NADH-quinone reductase subunit A; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit A; PFAM: Na-translocating NADH-quinone reductase subunit A YP_003943019.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: cko:CKO_02961 hypothetical protein YP_003943020.1 PFAM: glutamine amidotransferase class-II; KEGG: enc:ECL_01055 glutamine amidotransferase YP_003943021.1 KEGG: kva:Kvar_4151 phosphoheptose isomerase; TIGRFAM: phosphoheptose isomerase; PFAM: sugar isomerase (SIS) YP_003943022.1 PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain-containing protein; KEGG: kpe:KPK_4497 acyl-CoA dehydrogenase YP_003943023.1 KEGG: ecv:APECO1_2092 putative transporter IbeT; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like YP_003943024.1 PFAM: glucose-inhibited division protein A; KEGG: invasion protein IbeA YP_003943025.1 KEGG: regulatory protein IbgR; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; helix-turn-helix Fis-type; SMART: PAS domain containing protein YP_003943026.1 KEGG: glycoxylate carboligase GclA; TIGRFAM: glyoxylate carboligase; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein YP_003943027.1 TIGRFAM: hydroxypyruvate isomerase; KEGG: regulatory protein GclR; PFAM: Xylose isomerase domain-containing protein TIM barrel YP_003943028.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: 3-hydroxyisobutyrate dehydrogenase GhbD; PFAM: 6-phosphogluconate dehydrogenase NAD-binding YP_003943029.1 TIGRFAM: glycerate kinase; KEGG: glycerate kinase GclK; PFAM: glycerate kinase YP_003943030.1 PFAM: BCCT transporter; KEGG: carnitine transporter CniT YP_003943031.1 KEGG: zma:100217046 LOC100217046 YP_003943032.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ecm:EcSMS35_4861 dihydrolipoamide dehydrogenase CglE YP_003943033.1 PFAM: major facilitator superfamily MFS_1; KEGG: ecv:APECO1_2101 putative transporter YP_003943034.1 TIGRFAM: dihydroxyacetone kinase, DhaK subunit; KEGG: ecv:APECO1_2103 dihydroxyacetone kinase subunit DhaK; PFAM: Dak kinase YP_003943035.1 KEGG: ecm:EcSMS35_4857 dihydroxyacetone kinase subunit DhaL; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase YP_003943036.1 KEGG: ecm:EcSMS35_4856 phosphoenolpyruvate-protein phosphotransferase PtnE; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: PEP-utilizing protein; PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; PEP-utilising protein domain protein; PEP-utilising protein mobile region YP_003943037.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ent:Ent638_0757 hypothetical protein YP_003943038.1 PFAM: protein of unknown function UPF0118; KEGG: kva:Kvar_4154 hypothetical protein YP_003943039.1 KEGG: shm:Shewmr7_2820 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_003943040.1 PFAM: secretion protein HlyD family protein; KEGG: shn:Shewana3_2912 secretion protein HlyD family protein YP_003943041.1 KEGG: she:Shewmr4_2744 hypothetical protein YP_003943042.1 PFAM: Ion transport 2 domain protein; KEGG: shn:Shewana3_2914 ion transport 2 domain-containing protein YP_003943043.1 PFAM: major facilitator superfamily MFS_1; KEGG: etr:ETAE_0218 putative major facilitator superfamily MFS_1 YP_003943044.1 KEGG: cro:ROD_33921 putative permease; TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_003943045.1 PFAM: [2Fe-2S]-binding domain-containing protein; ferredoxin; KEGG: cro:ROD_33891 putative iron-sulfur binding protein YP_003943046.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; molybdopterin dehydrogenase FAD-binding; KEGG: cro:ROD_33881 hypothetical protein YP_003943047.1 KEGG: kpu:KP1_1410 lysine decarboxylase 1; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein YP_003943048.1 KEGG: kpu:KP1_1409 lysine/cadaverine antiporter; TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region YP_003943049.1 PFAM: transcriptional regulator domain-containing protein; KEGG: kpn:KPN_00498 DNA-binding transcriptional activator CadC YP_003943050.1 KEGG: kva:Kvar_0747 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_003943051.1 SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: kva:Kvar_4157 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III YP_003943052.1 KEGG: cko:CKO_02969 ribonuclease H; PFAM: ribonuclease H YP_003943053.1 PFAM: Methyltransferase type 11; KEGG: kva:Kvar_4159 methyltransferase type 11 YP_003943054.1 TIGRFAM: hydroxyacylglutathione hydrolase; KEGG: eok:G2583_0216 hydroxyacylglutathione hydrolase YP_003943055.1 manually curated; PFAM: Lytic transglycosylase catalytic; MLTD_N domain protein; Peptidoglycan-binding lysin domain; KEGG: kpn:KPN_00226 membrane-bound lytic murein transglycosylase D; SMART: Peptidoglycan-binding LysM YP_003943056.1 KEGG: kpe:KPK_4509 methyltransferase, UbiE/COQ5 family; manually curated; PFAM: Methyltransferase type 11 YP_003943057.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ent:Ent638_0743 hypothetical protein YP_003943058.1 PFAM: major facilitator superfamily MFS_1; KEGG: spq:SPAB_03358 hypothetical protein YP_003943059.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpe:KPK_4512 transcriptional regulator, LysR family YP_003943060.1 PFAM: aldo/keto reductase; KEGG: spq:SPAB_03360 2,5-diketo-D-gluconate reductase B YP_003943061.1 KEGG: kpu:KP1_1061 D,D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003943062.1 TIGRFAM: D-methionine ABC transporter, ATPase subunit; PFAM: ABC transporter related; NIL domain; KEGG: cko:CKO_03166 DL-methionine transporter ATP-binding subunit; SMART: AAA ATPase YP_003943063.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: enc:ECL_01002 DL-methionine transporter permease subunit YP_003943064.1 KEGG: kva:Kvar_4170 lipoprotein, YaeC family; TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein YP_003943065.1 KEGG: ent:Ent638_0734 outer membrane lipoprotein YP_003943066.1 PFAM: Uncharacterised protein family UPF0066; KEGG: enc:ECL_00999 hypothetical protein YP_003943067.1 KEGG: kva:Kvar_4173 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein YP_003943068.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: vap:Vapar_6241 isoprenylcysteine carboxyl methyltransferase YP_003943069.1 KEGG: kva:Kvar_4175 copper resistance lipoprotein NlpE YP_003943070.1 PFAM: Class I peptide chain release factor; KEGG: cko:CKO_03174 peptidyl-tRNA hydrolase domain protein YP_003943071.1 PFAM: YaeQ family protein; KEGG: kpe:KPK_4530 hypothetical protein YP_003943072.1 PFAM: protein of unknown function UPF0253; KEGG: cko:CKO_03176 hypothetical protein YP_003943073.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: sdy:SDY_0207 Rho-binding antiterminator YP_003943074.1 KEGG: eum:ECUMN_0185 tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase YP_003943075.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: yaeR; uncharacterized protein YaeR YP_003943076.1 KEGG: cko:CKO_03180 hypothetical protein; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein YP_003943077.1 KEGG: ctu:Ctu_08130 acetyl-CoA carboxylase carboxyltransferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region YP_003943078.1 SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: ent:Ent638_0722 DNA polymerase III subunit alpha; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type YP_003943079.1 KEGG: enc:ECL_00986 ribonuclease HII; PFAM: ribonuclease HII/HIII YP_003943080.1 TIGRFAM: lipid-A-disaccharide synthase; KEGG: cko:CKO_03184 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19 YP_003943081.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: kpu:KP1_1038 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_003943082.1 KEGG: cko:CKO_03186 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_003943083.1 KEGG: cro:ROD_01821 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein YP_003943084.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: ent:Ent638_0716 periplasmic chaperone YP_003943085.1 KEGG: enc:ECL_00980 outer membrane protein assembly factor YaeT; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein YP_003943086.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: cro:ROD_01791 protease; SMART: PDZ/DHR/GLGF domain protein YP_003943087.1 KEGG: sbc:SbBS512_E0168 CDP-diglyceride synthase; manually curated; PFAM: phosphatidate cytidylyltransferase YP_003943088.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase; manually curated; KEGG: cro:ROD_01771 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase YP_003943089.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein; manually curated; KEGG: eoi:ECO111_0174 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003943090.1 KEGG: kva:Kvar_4196 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor YP_003943091.1 KEGG: ent:Ent638_0709 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003943092.1 KEGG: enc:ECL_00972 elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein YP_003943093.1 KEGG: kpu:KP1_1021 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2 YP_003943094.1 KEGG: ent:Ent638_0706 methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_003943095.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: protein-P-II uridylyltransferase; KEGG: enc:ECL_00969 PII uridylyl-transferase; PFAM: GlnD PII-uridylyltransferase; DNA polymerase beta domain protein region; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein YP_003943096.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: sdy:SDY_0182 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_003943097.1 KEGG: ctu:Ctu_07930 hypothetical protein YP_003943098.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: enc:ECL_00965 serine endoprotease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_003943099.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; KEGG: cko:CKO_03207 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain YP_003943100.1 TIGRFAM: MTA/SAH nucleosidase; KEGG: spq:SPAB_00265 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1 YP_003943101.1 PFAM: periplasmic binding protein; KEGG: sek:SSPA0205 vitamin B12-transporter protein BtuF YP_003943102.1 PFAM: Uncharacterised protein family UPF0126; KEGG: kva:Kvar_4209 protein of unknown function UPF0126 YP_003943103.1 KEGG: ses:SARI_02800 iron-sulfur cluster insertion protein ErpA; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein YP_003943104.1 PFAM: Cl- channel voltage-gated family protein; KEGG: kpu:KP1_1007 chloride channel protein YP_003943105.1 KEGG: kva:Kvar_4212 glutamate-1-semialdehyde-2,1-aminomutase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III YP_003943106.1 PFAM: transport system permease protein; KEGG: cko:CKO_03215 iron-hydroxamate transporter permease subunit YP_003943107.1 PFAM: periplasmic binding protein; KEGG: cro:ROD_01561 ferrichrome-binding periplasmic protein YP_003943108.1 KEGG: sdy:SDY_0167 iron-hydroxamate transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003943109.1 KEGG: stm:STM0191 ferrichrome outer membrane transporter; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_003943110.1 TIGRFAM: penicillin-binding protein 1B; KEGG: enc:ECL_00953 penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_003943111.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase-associated domain protein; helicase domain protein; KEGG: eum:ECUMN_0145 ATP-dependent RNA helicase HrpB; SMART: DEAD-like helicase ; helicase domain protein YP_003943112.1 KEGG: kpu:KP1_0975 2'-5' RNA ligase; TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX YP_003943113.1 KEGG: set:SEN0192 sugar fermentation stimulation protein A; TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein YP_003943114.1 TIGRFAM: RNA polymerase-binding protein DksA; KEGG: kva:Kvar_4237 transcriptional regulator, TraR/DksA family YP_003943115.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: kva:Kvar_4238 glutamate--tRNA ligase YP_003943116.1 manually curated; TIGRFAM: poly(A) polymerase; KEGG: cro:ROD_01471 poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region YP_003943117.1 PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; manually curated; KEGG: enc:ECL_00946 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_003943118.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: enc:ECL_00945 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_003943119.1 KEGG: cko:CKO_03229 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase YP_003943120.1 TIGRFAM: aspartate 1-decarboxylase; KEGG: ses:SARI_02818 aspartate alpha-decarboxylase; PFAM: aspartate decarboxylase YP_003943121.1 PFAM: polysaccharide deacetylase; KEGG: kpe:KPK_4598 polysaccharide deacetylase domain protein YP_003943122.1 PFAM: PTS system fructose subfamily IIA component; KEGG: kva:Kvar_4245 PTS system fructose subfamily IIA component YP_003943123.1 PFAM: ABC-2 type transporter; KEGG: kpu:KP1_0963 putative ABC transport system integral membrane component YP_003943124.1 KEGG: sec:SC0172 putative ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase YP_003943125.1 KEGG: can; carbonic anhydrase 2; PFAM: carbonic anhydrase YP_003943126.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: efe:EFER_0146 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003943127.1 SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; KEGG: kva:Kvar_4250 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone repeat-containing protein YP_003943128.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: enc:ECL_00928 multicopper oxidase YP_003943129.1 KEGG: enc:ECL_00927 hypothetical protein YP_003943130.1 KEGG: see:SNSL254_A0182 spermidine synthase; TIGRFAM: spermidine synthase; PFAM: Spermine synthase YP_003943131.1 TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; KEGG: enc:ECL_00925 S-adenosylmethionine decarboxylase; PFAM: S-adenosylmethionine decarboxylase related YP_003943132.1 PFAM: Uncharacterised conserved protein UCP006287; KEGG: enc:ECL_00919 hypothetical protein YP_003943133.1 KEGG: enc:ECL_00918 aconitate hydratase 2; TIGRFAM: aconitate hydratase 2; PFAM: Aconitase B; aconitate hydratase domain-containing protein YP_003943134.1 KEGG: kva:Kvar_4259 hypothetical protein YP_003943135.1 KEGG: ent:Ent638_0663 putative periplasmic protein YP_003943136.1 KEGG: kpu:KP1_0945 probable secreted protein YP_003943137.1 KEGG: sed:SeD_A0167 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_003943138.1 KEGG: kpe:KPK_4620 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein YP_003943139.1 KEGG: enc:ECL_00913 pyruvate dehydrogenase E1 component; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: Transketolase domain-containing protein YP_003943140.1 KEGG: enc:ECL_00912 pyruvate dehydrogenase complex repressor; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH YP_003943141.1 PFAM: amino acid permease-associated region; KEGG: enc:ECL_00910 aromatic amino acid transporter YP_003943142.1 KEGG: kpu:KP1_0934 regulatory protein AmpE YP_003943143.1 KEGG: kpe:KPK_4628 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2 YP_003943144.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: enc:ECL_00905 quinolinate phosphoribosyltransferase; PFAM: Quinolinate phosphoribosyl transferase YP_003943145.1 KEGG: sdy:SDY_0138 putative major pilin subunit YP_003943146.1 PFAM: type II secretion system protein E; KEGG: enc:ECL_00903 protein transport protein HofB YP_003943147.1 PFAM: Type II secretion system F domain; KEGG: cko:CKO_03270 type IV pilin biogenesis protein YP_003943148.1 KEGG: ent:Ent638_0649 guanosine 5'-monophosphate oxidoreductase; TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase YP_003943149.1 TIGRFAM: dephospho-CoA kinase; KEGG: set:SEN0144 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_003943150.1 PFAM: protein of unknown function DUF1342; KEGG: cko:CKO_03274 hypothetical protein YP_003943151.1 PFAM: protein of unknown function DUF329; KEGG: kpu:KP1_0924 zinc-binding protein YP_003943152.1 KEGG: kpu:KP1_0923 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase YP_003943153.1 KEGG: cko:CKO_03277 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein YP_003943154.1 KEGG: kva:Kvar_4281 secretion monitor family proten; manually curated; PFAM: secretion monitor family proten YP_003943155.1 manually curated; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; KEGG: sdy:SDY_0126 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase YP_003943156.1 KEGG: cro:ROD_01011 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain YP_003943157.1 KEGG: enc:ECL_00891 cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA YP_003943158.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: kva:Kvar_4285 cell division protein FtsQ YP_003943159.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: kpe:KPK_4645 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_003943160.1 KEGG: kva:Kvar_4287 UDP-N-acetylmuramate/alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_003943161.1 KEGG: ent:Ent638_0636 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain YP_003943162.1 KEGG: kpe:KPK_4648 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein YP_003943163.1 KEGG: set:SEN0127 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003943164.1 KEGG: cko:CKO_03288 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_003943165.1 KEGG: eum:ECUMN_0086 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003943166.1 KEGG: kva:Kvar_4293 UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_003943167.1 KEGG: enc:ECL_00881 hypothetical protein; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003943168.1 KEGG: set:SEN0122 cell division protein FtsL; TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL YP_003943169.1 KEGG: enc:ECL_00879 hypothetical protein; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase YP_003943170.1 KEGG: ent:Ent638_0627 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain YP_003943171.1 TIGRFAM: D-fructose-responsive transcription factor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ses:SARI_02884 DNA-binding transcriptional regulator FruR; SMART: regulatory protein LacI YP_003943172.1 TIGRFAM: acetolactate synthase, small subunit; KEGG: kva:Kvar_4299 acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein YP_003943173.1 KEGG: kpe:KPK_4659 acetolactate synthase 3 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein YP_003943174.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: kpu:KP1_0897 leucine transcriptional activator YP_003943175.1 KEGG: enc:ECL_00872 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein YP_003943176.1 TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: enc:ECL_00871 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003943177.1 KEGG: set:SEN0112 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain-containing protein YP_003943178.1 KEGG: enc:ECL_00869 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein YP_003943179.1 KEGG: cko:CKO_03309 hypothetical protein; TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1 YP_003943180.1 KEGG: ent:Ent638_0617 hypothetical protein YP_003943181.1 PFAM: extracellular solute-binding protein family 5; KEGG: cko:CKO_03312 transcriptional regulator SgrR YP_003943182.1 KEGG: kpe:KPK_4675 thiamine transporter substrate binding subunit; TIGRFAM: thiamine ABC transporter, periplasmic binding protein; ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein family 1 YP_003943183.1 KEGG: cko:CKO_03315 thiamine transporter membrane protein; TIGRFAM: thiamine ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_003943184.1 TIGRFAM: ABC transporter, ATPase subunit, ThiQ subfamily; PFAM: ABC transporter related; KEGG: cko:CKO_03316 thiamine transporter ATP-binding subunit; SMART: AAA ATPase YP_003943185.1 PFAM: SNARE associated Golgi protein; KEGG: enc:ECL_00861 hypothetical protein YP_003943186.1 KEGG: cko:CKO_03318 DNA-binding transcriptional regulator AraC; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003943187.1 KEGG: cro:ROD_00701 ribulokinase; TIGRFAM: L-ribulokinase; PFAM: Carbohydrate kinase, FGGY-like YP_003943188.1 KEGG: kpn:KPN_00061 L-arabinose isomerase; PFAM: L-arabinose isomerase YP_003943189.1 KEGG: ecz:ECS88_0064 L-ribulose-5-phosphate 4-epimerase; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein YP_003943190.1 KEGG: kpn:KPN_00059 DNA polymerase II; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; SMART: DNA-directed DNA polymerase B YP_003943191.1 KEGG: kpu:KP1_0871 ATP-dependent helicase HepA; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003943192.1 PFAM: pseudouridine synthase; KEGG: kpe:KPK_4685 23S rRNA/tRNA pseudouridine synthase A YP_003943193.1 KEGG: cko:CKO_03325 Dna-J like membrane chaperone protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_003943194.1 PFAM: Organic solvent tolerance protein; OstA family protein; KEGG: kpn:KPN_00051 organic solvent tolerance protein YP_003943195.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: enc:ECL_00851 peptidyl-prolyl cis-trans isomerase SurA YP_003943196.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: kpe:KPK_4693 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_003943197.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: cko:CKO_03329 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase-like YP_003943198.1 PFAM: ApaG domain protein; KEGG: cko:CKO_03330 ApaG YP_003943199.1 KEGG: enc:ECL_00847 diadenosine tetraphosphatase; TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); PFAM: metallophosphoesterase YP_003943200.1 KEGG: kva:Kvar_4338 dihydrofolate reductase; PFAM: dihydrofolate reductase region YP_003943201.1 KEGG: enc:ECL_00845 glutathione-regulated potassium-efflux system protein KefC; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein YP_003943202.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: enc:ECL_00844 glutathione-regulated potassium-efflux system ancillary protein KefF YP_003943203.1 PFAM: major facilitator superfamily MFS_1; KEGG: kva:Kvar_4341 major facilitator superfamily MFS_1 YP_003943204.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: kpe:KPK_4701 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_003943205.1 KEGG: kpe:KPK_4702 sugar binding transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003943206.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kva:Kvar_4344 short-chain dehydrogenase/reductase SDR YP_003943207.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: kva:Kvar_4345 carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_003943208.1 PFAM: Conserved hypothetical protein CHP00022; KEGG: kva:Kvar_4346 hypothetical protein YP_003943209.1 KEGG: enc:ECL_00840 carbamoyl-phosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein YP_003943210.1 KEGG: cko:CKO_03351 carbamoyl phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I YP_003943211.1 TIGRFAM: dihydrodipicolinate reductase; KEGG: enc:ECL_00838 hypothetical protein; PFAM: dihydrodipicolinate reductase YP_003943212.1 KEGG: cro:ROD_00331 putative LacI-family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003943213.1 KEGG: cro:ROD_00321 hypothetical protein YP_003943214.1 PFAM: PTS system fructose subfamily IIA component; KEGG: cro:ROD_00311 putative PTS system protein YP_003943215.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: cro:ROD_00301 putative PTS system protein YP_003943216.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: cro:ROD_00291 putative PTS system protein YP_003943217.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: cro:ROD_00281 putative PTS system protein YP_003943218.1 PFAM: glucose-6-phosphate isomerase; KEGG: cro:ROD_00271 hypothetical protein YP_003943219.1 KEGG: spe:Spro_4276 glucose-6-phosphate isomerase; PFAM: glucose-6-phosphate isomerase YP_003943220.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: kva:Kvar_4370 inosine/uridine-preferring nucleoside hydrolase YP_003943221.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: cro:ROD_00261 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein YP_003943222.1 KEGG: cro:ROD_00251 FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase; PFAM: peptidylprolyl isomerase FKBP-type YP_003943223.1 TIGRFAM: lipoprotein signal peptidase; KEGG: sek:SSPA0044 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II YP_003943224.1 KEGG: enc:ECL_00834 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase YP_003943225.1 TIGRFAM: riboflavin biosynthesis protein RibF; KEGG: cko:CKO_03367 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase; Riboflavin kinase YP_003943226.1 KEGG: eci:UTI89_C0024 hypothetical protein YP_003943227.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_03369 transcriptional activator NhaR YP_003943228.1 KEGG: seg:SG0042 pH-dependent sodium/proton antiporter; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA YP_003943229.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; KEGG: enc:ECL_00828 chaperone HSP40; SMART: heat shock protein DnaJ domain protein YP_003943230.1 KEGG: kva:Kvar_4380 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_003943231.1 manually curated; KEGG: etw:ECSP_0013 hypothetical protein YP_003943232.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: enc:ECL_00824 hypothetical protein YP_003943233.1 PFAM: major facilitator superfamily MFS_1; KEGG: kva:Kvar_4384 major facilitator superfamily MFS_1 YP_003943234.1 KEGG: mog; molybdopterin biosynthesis mog protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain YP_003943235.1 KEGG: kva:Kvar_4386 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_003943236.1 KEGG: ent:Ent638_0569 amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter YP_003943237.1 PFAM: protein of unknown function DUF328; KEGG: enc:ECL_00818 hypothetical protein YP_003943238.1 PFAM: Protein of unknown function DUF2502; KEGG: kva:Kvar_4389 protein of unknown function DUF2502 YP_003943239.1 TIGRFAM: threonine synthase; KEGG: cko:CKO_03383 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003943240.1 KEGG: set:SEN0002 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_003943241.1 KEGG: kpu:KP1_0820 bifunctional aspartokinase I/homeserine dehydrogenase I; TIGRFAM: aspartate kinase; PFAM: homoserine dehydrogenase; aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding YP_003943242.1 KEGG: kva:Kvar_4393 RNA methyltransferase, TrmH family, group 1; TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU) YP_003943243.1 KEGG: enc:ECL_00811 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003943244.1 KEGG: tcr:508699.120 dipeptidyl-peptidase; TIGRFAM: hydrolase CocE/NonD family protein; PFAM: X-Pro dipeptidyl-peptidase domain protein YP_003943245.1 KEGG: vei:Veis_0412 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003943246.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0411 binding-protein-dependent transport systems inner membrane component YP_003943247.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0410 binding-protein-dependent transport systems inner membrane component YP_003943248.1 PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_0409 extracellular solute-binding protein YP_003943249.1 manually curated; KEGG: oan:Oant_2780 hypothetical protein YP_003943250.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: vex:VEA_001290 transcriptional regulator LysR family protein YP_003943251.1 PFAM: CreA family protein; KEGG: cko:CKO_03389 hypothetical protein YP_003943252.1 KEGG: kva:Kvar_4400 transcriptional regulator, AraC family; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003943253.1 PFAM: Phosphoglycerate mutase; KEGG: kpn:KPN_04850 phosphoglycerate mutase YP_003943254.1 PFAM: protein of unknown function DUF84; KEGG: see:SNSL254_A4942 NTPase YP_003943255.1 KEGG: ent:Ent638_0554 Trp operon repressor; TIGRFAM: trp operon repressor; PFAM: Trp repressor YP_003943256.1 PFAM: Lytic transglycosylase catalytic; KEGG: enc:ECL_00805 lytic murein transglycosylase YP_003943257.1 KEGG: enc:ECL_00804 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003943258.1 KEGG: ecz:ECS88_3322 capsule polysaccharide export inner-membrane protein YP_003943259.1 PFAM: polysaccharide export protein; KEGG: ecq:ECED1_3595 polysialic acid transport protein precursor YP_003943260.1 PFAM: Capsule polysaccharide biosynthesis protein; KEGG: ecq:ECED1_3597 capsule polysaccharide export protein YP_003943261.1 PFAM: Capsule polysaccharide biosynthesis protein; KEGG: ecq:ECED1_3598 capsule polysaccharide export protein YP_003943262.1 KEGG: bmq:BMQ_1137 hypothetical protein YP_003943263.1 PFAM: glycosyl transferase family 2; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: lmh:LMHCC_1548 glycosyl transferase, group 2 family protein YP_003943264.1 KEGG: svo:SVI_0622 hypothetical protein YP_003943265.1 KEGG: esa:ESA_03357 hypothetical protein YP_003943266.1 manually curated; PFAM: ABC transporter related; KEGG: ecq:ECED1_3601 polysialic acid transport ATP-binding protein KpsT; SMART: AAA ATPase YP_003943267.1 KEGG: ecq:ECED1_3602 polysialic acid transport protein; manually curated; PFAM: ABC-2 type transporter YP_003943268.1 TIGRFAM: nicotinamide-nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: helix-turn-helix domain protein; KEGG: cro:ROD_49131 transcriptional regulator; SMART: helix-turn-helix domain protein YP_003943269.1 KEGG: eci:UTI89_C5160 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase YP_003943270.1 TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: ect:ECIAI39_4920 phosphoserine phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003943271.1 PFAM: Virulence factor, haemolysin regulator; KEGG: cro:ROD_49101 hypothetical protein YP_003943272.1 KEGG: cko:CKO_03402 lipoate-protein ligase A; TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: Lipoate protein ligase-like; biotin/lipoate A/B protein ligase YP_003943273.1 KEGG: enc:ECL_00796 purine nucleoside phosphorylase; TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1 YP_003943274.1 TIGRFAM: phosphopentomutase; KEGG: kva:Kvar_4412 phosphopentomutase; PFAM: metalloenzyme domain protein YP_003943275.1 TIGRFAM: thymidine phosphorylase; pyrimidine-nucleoside phosphorylase; KEGG: cko:CKO_03409 thymidine phosphorylase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; Pyrimidine nucleoside phosphorylase domain YP_003943276.1 TIGRFAM: deoxyribose-phosphate aldolase; KEGG: ent:Ent638_0541 deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_003943277.1 KEGG: eum:ECUMN_5003 putative pyruvate formate lyase activating enzyme; manually curated; PFAM: Radical SAM domain protein YP_003943278.1 PFAM: TatD-related deoxyribonuclease; KEGG: kpn:KPN_04835 putative hydrolase YP_003943279.1 PFAM: Patatin; KEGG: ses:SARI_03015 hypothetical protein YP_003943280.1 PFAM: protein of unknown function DUF1328; KEGG: ctu:Ctu_05910 hypothetical protein YP_003943281.1 KEGG: enc:ECL_00786 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_003943282.1 KEGG: kpu:KP1_0788 nucleotidase; TIGRFAM: HAD superfamily (subfamily IA) hydrolase, TIGR02254; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003943283.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; KEGG: kva:Kvar_4421 ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_003943284.1 TIGRFAM: DNA polymerase III, psi subunit; KEGG: kva:Kvar_4422 DNA polymerase III, psi subunit; PFAM: DNA polymerase III psi subunit YP_003943285.1 KEGG: kva:Kvar_4423 rRNA (guanine-N(2)-)-methyltransferase; PFAM: methyltransferase small; Methyltransferase small domain protein YP_003943286.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: kva:Kvar_4425 diguanylate cyclase; SMART: GGDEF domain containing protein YP_003943287.1 KEGG: sec:SC4402 ferric iron reductase involved in ferric hydroximate transport YP_003943288.1 TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; KEGG: kpu:KP1_0780 lactose/cellobiose-specific PTS family enzyme IIC component; PFAM: phosphotransferase system EIIC YP_003943289.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: kva:Kvar_4428 YbaK/prolyl-tRNA synthetase associated region YP_003943290.1 KEGG: ent:Ent638_0524 DNA-binding transcriptional activator BglJ; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003943291.1 KEGG: cro:ROD_48671 transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003943292.1 PFAM: protein of unknown function DUF1212; KEGG: kpe:KPK_4800 hypothetical protein YP_003943293.1 KEGG: cro:ROD_48621 hypothetical protein YP_003943294.1 KEGG: kpn:KPN_04812 primosomal protein DnaI YP_003943295.1 SMART: AAA ATPase; KEGG: sec:SC4395 DNA replication protein DnaC YP_003943296.1 PFAM: Protein of unknown function DUF2501; KEGG: cko:CKO_03439 hypothetical protein YP_003943297.1 KEGG: dze:Dd1591_0973 catalase; PFAM: Catalase related subgroup; Catalase domain protein YP_003943298.1 PFAM: Ankyrin; KEGG: etr:ETAE_1367 hypothetical protein YP_003943299.1 KEGG: cko:CKO_03440 phosphoglycerol transferase I; PFAM: sulfatase YP_003943300.1 PFAM: GCN5-related N-acetyltransferase; KEGG: kpn:KPN_04800 putative N-acetyltransferase YP_003943301.1 KEGG: cko:CKO_03441 hypothetical protein; manually curated; PFAM: GCN5-related N-acetyltransferase YP_003943302.1 manually curated; PFAM: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein; KEGG: ent:Ent638_0513 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; ligand binding Tar domain protein; histidine kinase HAMP region domain protein YP_003943303.1 PFAM: carbon starvation protein CstA; KEGG: enc:ECL_00747 carbon starvation protein CstA YP_003943304.1 PFAM: protein of unknown function DUF466; KEGG: enc:ECL_00746 hypothetical protein YP_003943305.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: ent:Ent638_0509 putative GTP-binding protein YjiA YP_003943306.1 KEGG: enc:ECL_00743 hypothetical protein YP_003943307.1 PFAM: peptidase S45 penicillin amidase; KEGG: eoh:ECO103_5123 penicillin G acylase precursor YP_003943308.1 KEGG: etr:ETAE_2779 purine nucleoside phosphorylase; TIGRFAM: xanthosine phosphorylase; inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine or other phosphorylase family 1 YP_003943309.1 PFAM: major facilitator superfamily MFS_1; KEGG: etr:ETAE_2780 hypothetical protein YP_003943310.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: etr:ETAE_2781 transcriptional regulator YP_003943311.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: kva:Kvar_4453 malate/L-lactate dehydrogenase YP_003943312.1 PFAM: amino acid permease-associated region; KEGG: cro:ROD_25501 putative amino acid permease YP_003943313.1 PFAM: Aldehyde Dehydrogenase; KEGG: cro:ROD_25491 putative aldehyde dehydrogenase YP_003943314.1 PFAM: dihydrodipicolinate synthetase; KEGG: cro:ROD_25481 putative dihydrodipicolinate synthetase YP_003943315.1 KEGG: kva:Kvar_4457 transcriptional regulator, AraC family; PFAM: PAS fold-4 domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003943316.1 KEGG: cro:ROD_25441 putative hydroxyproline-2-epimerase; PFAM: proline racemase YP_003943317.1 PFAM: FAD dependent oxidoreductase; KEGG: kva:Kvar_4459 FAD dependent oxidoreductase YP_003943318.1 KEGG: cro:ROD_25421 hypothetical protein YP_003943319.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: kva:Kvar_4461 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003943320.1 TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: enc:ECL_00759 4-hydroxyphenylacetate degradative operon repressor; SMART: regulatory protein MarR YP_003943321.1 TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; KEGG: ecy:ECSE_4629 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_003943322.1 KEGG: kpu:KP1_0741 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase YP_003943323.1 TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; KEGG: kva:Kvar_4466 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B YP_003943324.1 KEGG: enc:ECL_00755 5-carboxymethyl-2-hydroxymuconate delta isomerase; PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase YP_003943325.1 TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; KEGG: enc:ECL_00754 2-oxo-hept-3-ene-1,7-dioate hydratase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_003943326.1 TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; KEGG: kva:Kvar_4469 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase YP_003943327.1 KEGG: kva:Kvar_4470 4-hydroxyphenylacetate transporter; TIGRFAM: 4-hydroxyphenylacetate transporter; PFAM: major facilitator superfamily MFS_1 YP_003943328.1 TIGRFAM: 4-hydroxyphenylacetate catabolism regulatory protein HpaA; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: enc:ECL_00751 4-hydroxyphenylacetate catabolism regulatory protein HpaA; SMART: Helix-turn-helix, AraC domain YP_003943329.1 KEGG: enc:ECL_00750 4-hydroxyphenylacetate-3-hydroxylase large chain; TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit; PFAM: 4-hydroxyphenylacetate 3-hydroxylase YP_003943330.1 KEGG: enc:ECL_00749 4-hydroxyphenylacetate-3-hydroxylase small chain; TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit; PFAM: flavin reductase domain protein FMN-binding YP_003943331.1 KEGG: kva:Kvar_4501 protein of unknown function DUF1127 YP_003943332.1 KEGG: kpu:KP1_0709 putative aminotransferase; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH YP_003943333.1 KEGG: kpu:KP1_0708 putative glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_003943334.1 KEGG: cko:CKO_05134 hypothetical protein; PFAM: sigma-54 factor interaction domain-containing protein; PRD domain protein; SMART: AAA ATPase YP_003943335.1 PFAM: PTS system fructose subfamily IIA component; KEGG: eoj:ECO26_4033 putative enzyme IIB component of PTS YP_003943336.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: cko:CKO_05131 hypothetical protein YP_003943337.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: cko:CKO_05130 hypothetical protein YP_003943338.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: cko:CKO_05129 hypothetical protein YP_003943339.1 KEGG: cko:CKO_05128 hypothetical protein; TIGRFAM: pyridoxal phosphate-dependent enzyme; PFAM: Pyridoxal phosphate-dependent transferase YP_003943340.1 PFAM: protein of unknown function DUF1341; KEGG: sew:SeSA_A3974 hypothetical protein YP_003943341.1 KEGG: spe:Spro_1947 putative lipoprotein YP_003943342.1 PFAM: Protein of unknown function DUF2084; KEGG: kpe:KPK_4968 hypothetical protein YP_003943343.1 PFAM: Methyltransferase type 11; KEGG: mma:MM_0449 SAM-dependent methyltransferase YP_003943344.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kva:Kvar_4509 transcriptional regulator, LysR family YP_003943345.1 KEGG: bur:Bcep18194_B2332 NAD(P)H dehydrogenase (quinone); PFAM: NAD(P)H dehydrogenase (quinone) YP_003943346.1 SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: enc:ECL_00722 cupin 4 family protein YP_003943347.1 PFAM: Glycogen synthesis protein; KEGG: cro:ROD_35921 glycogen synthesis protein GlgS YP_003943348.1 KEGG: ebi:EbC_23320 GntR-family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH YP_003943349.1 KEGG: ebi:EbC_23330 conserved uncharacterized protein YP_003943350.1 PFAM: amino acid permease-associated region; KEGG: ebi:EbC_23340 putative amino acid permease YP_003943351.1 PFAM: protein of unknown function DUF1398; KEGG: sec:SC1853 putative cytoplasmic protein YP_003943352.1 KEGG: ctu:Ctu_05280 sugar fermentation stimulation protein B YP_003943353.1 PFAM: protein of unknown function DUF1294; KEGG: sed:SeD_A1709 cyanate transport YP_003943354.1 PFAM: protein of unknown function DUF1219; KEGG: ebw:BWG_2400 CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system YP_003943355.1 PFAM: YagBYeeUYfjZ family protein; KEGG: ebw:BWG_2399 CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system YP_003943356.1 PFAM: protein of unknown function DUF987; KEGG: ecm:EcSMS35_0309 hypothetical protein YP_003943357.1 KEGG: ecm:EcSMS35_0308 RadC family DNA repair protein; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC YP_003943358.1 PFAM: Antirestriction protein; KEGG: ecm:EcSMS35_0307 antirestriction protein YP_003943359.1 PFAM: protein of unknown function DUF905; KEGG: ebw:BWG_0231 CP4-6 prophage; hypothetical protein YP_003943360.1 KEGG: eoi:ECO111_0314 hypothetical protein YP_003943361.1 KEGG: seg:SG0278 hypothetical protein YP_003943362.1 PFAM: regulatory protein DeoR; KEGG: ddc:Dd586_2893 regulatory protein DeoR YP_003943363.1 KEGG: ebw:BWG_0234 CP4-6 prophage; hypothetical protein YP_003943364.1 PFAM: GTP-binding protein HSR1-related; KEGG: ebw:BWG_2389 CP4-57 prophage; putative GTP-binding protein YP_003943365.1 KEGG: kpn:KPN_01442 hypothetical protein YP_003943366.1 KEGG: kpn:KPN_01441 hypothetical protein YP_003943367.1 KEGG: kpn:KPN_01440 hypothetical protein YP_003943368.1 KEGG: gdj:Gdia_2778 hypothetical protein YP_003943369.1 KEGG: abu:Abu_0901 hypothetical protein YP_003943370.1 KEGG: ecy:ECSE_2203 putative cytochrome YP_003943371.1 KEGG: ecp:ECP_2999 hypothetical protein YP_003943372.1 KEGG: pct:PC1_2879 hypothetical protein YP_003943373.1 PFAM: Prophage CP4-57 regulatory; KEGG: ddc:Dd586_2885 phage transcriptional regulator, AlpA YP_003943374.1 KEGG: ddc:Dd586_0403 hypothetical protein YP_003943375.1 KEGG: pwa:Pecwa_1391 hypothetical protein YP_003943376.1 KEGG: eca:ECA2864 hypothetical protein YP_003943377.1 KEGG: ecm:EcSMS35_3195 hypothetical protein YP_003943378.1 KEGG: eca:ECA2865 hypothetical protein YP_003943379.1 PFAM: MgtC/SapB transporter; KEGG: etr:ETAE_1776 putative Mg(2+) transport ATPase YP_003943380.1 PFAM: Fimbrial protein domain-containing protein; KEGG: sew:SeSA_A3199 fimbrial protein YP_003943381.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sew:SeSA_A3198 fimbrial usher protein YP_003943382.1 PFAM: Pili assembly chaperone, N-terminal; KEGG: set:SEN2871 probable fimbrial chaperone protein YP_003943383.1 KEGG: see:SNSL254_A3259 hypothetical protein YP_003943384.1 PFAM: Transcription regulator CaiF; KEGG: sec:SC2964 hypothetical protein YP_003943385.1 KEGG: see:SNSL254_A3257 hypothetical protein YP_003943386.1 KEGG: pmr:PMI0984 immunoglobulin-binding regulator YP_003943387.1 KEGG: eck:EC55989_3323 hypothetical protein; putative membrane protein YP_003943388.1 KEGG: ant:Arnit_1004 hypothetical protein YP_003943389.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: eoh:ECO103_5074 putative 6-pyruvoyl tetrahydrobiopterin synthase YP_003943390.1 KEGG: cps:CPS_2946 SNF2 family protein; PFAM: SNF2-related protein; SMART: DEAD-like helicase YP_003943391.1 KEGG: cps:CPS_2945 putative DEAD/DEAH box helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase YP_003943392.1 KEGG: cps:CPS_2944 hypothetical protein YP_003943393.1 KEGG: cps:CPS_2943 hypothetical protein YP_003943394.1 KEGG: cps:CPS_2942 hypothetical protein YP_003943395.1 KEGG: cps:CPS_2941 putative DEAD/DEAH box helicase; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003943396.1 KEGG: cps:CPS_2940 hypothetical protein YP_003943397.1 KEGG: cps:CPS_2939 hypothetical protein YP_003943398.1 TIGRFAM: DGQHR domain protein; KEGG: eoh:ECO103_5065 hypothetical protein YP_003943399.1 KEGG: eoh:ECO103_5064 hypothetical protein YP_003943400.1 KEGG: eoh:ECO103_5063 hypothetical protein YP_003943401.1 KEGG: eoh:ECO103_5062 hypothetical protein YP_003943402.1 PFAM: integrase family protein; KEGG: sbc:SbBS512_E4814 site-specific recombinase, phage integrase family protein YP_003943403.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: kva:Kvar_4571 alcohol dehydrogenase zinc-binding domain protein YP_003943404.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpu:KP1_0569 putative sn-glycerol-3-phosphate transport system permease YP_003943405.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpn:KPN_04681 putative sn-glycerol-3-phosphate transport system permease YP_003943406.1 PFAM: metallophosphoesterase; KEGG: kpn:KPN_04680 putative phosphohydrolase YP_003943407.1 KEGG: kpe:KPK_4986 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase YP_003943408.1 PFAM: extracellular solute-binding protein family 1; KEGG: kva:Kvar_4576 extracellular solute-binding protein family 1 YP_003943409.1 manually curated; KEGG: svo:SVI_3236 hypothetical protein YP_003943410.1 PFAM: transposase IS4 family protein; KEGG: pct:PC1_1038 transposase IS4 family protein YP_003943411.1 PFAM: permease YjgP/YjgQ family protein; KEGG: cko:CKO_03536 hypothetical protein YP_003943412.1 PFAM: permease YjgP/YjgQ family protein; KEGG: ent:Ent638_3647 permease YjgP/YjgQ family protein YP_003943413.1 KEGG: set:SEN4230 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein YP_003943414.1 KEGG: cko:CKO_03541 DNA polymerase III subunit chi; PFAM: DNA polymerase III chi subunit HolC YP_003943415.1 KEGG: cko:CKO_03542 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase YP_003943416.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cko:CKO_03549 hypothetical protein YP_003943417.1 KEGG: enc:ECL_00681 hypothetical protein YP_003943418.1 PFAM: tRNA-hydroxylase; KEGG: seg:SG4296 tRNA hydroxylase YP_003943419.1 PFAM: protein of unknown function DUF1260; KEGG: kpu:KP1_0540 hypothetical protein YP_003943420.1 TIGRFAM: ornithine carbamoyltransferase; KEGG: enc:ECL_00678 phage ornithine carbamoyltransferase 2, chain F; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain YP_003943421.1 PFAM: Conserved hypothetical protein CHP00022; KEGG: sdy:SDY_4270 hypothetical protein YP_003943422.1 TIGRFAM: arginine deiminase; KEGG: sea:SeAg_B4751 arginine deiminase; PFAM: amidinotransferase YP_003943423.1 TIGRFAM: carbamate kinase; KEGG: enc:ECL_00670 carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003943424.1 KEGG: cko:CKO_03557 ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain YP_003943425.1 KEGG: pmy:Pmen_1109 arginine/ornithine antiporter; TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region YP_003943426.1 PFAM: Arginine repressor-like; KEGG: cko:CKO_03560 hypothetical protein YP_003943427.1 KEGG: etw:ECSP_5348 pyrBI operon leader peptide; manually curated; PFAM: PyrBI operon leader peptide YP_003943428.1 TIGRFAM: aspartate carbamoyltransferase; KEGG: kpu:KP1_0536 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_003943429.1 KEGG: ent:Ent638_0446 aspartate carbamoyltransferase regulatory subunit; TIGRFAM: aspartate carbamoyltransferase, regulatory subunit; PFAM: Aspartate carbamoyltransferase regulatory subunit-like YP_003943430.1 KEGG: ent:Ent638_0445 putative endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP YP_003943431.1 KEGG: enc:ECL_00661 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Beta-N-acetylhexosaminidase, subunit a/b YP_003943432.1 KEGG: kpe:KPK_5014 magnesium-transporting ATPase MgtA; TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase YP_003943433.1 manually curated; KEGG: cko:CKO_03570 hypothetical protein YP_003943434.1 TIGRFAM: trehalose operon repressor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: treR; HTH-type transcriptional regulator TreR; SMART: regulatory protein LacI YP_003943435.1 TIGRFAM: PTS system, trehalose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PTS system, maltose and glucose-specific subfamily, IIC subunit; KEGG: cko:CKO_03571 PTS system trehalose(maltose)-specific transporter subunits IIBC; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_003943436.1 TIGRFAM: alpha,alpha-phosphotrehalase; PFAM: alpha amylase catalytic region; KEGG: kpu:KP1_0530 trehalose-6-phosphate hydrolase; SMART: alpha amylase catalytic sub domain YP_003943437.1 KEGG: plu:plu0189 carbapenem biosynthesis/resistance protein CpmH YP_003943438.1 manually curated; KEGG: plu:plu0880 CpmJ protein YP_003943439.1 PFAM: formate C-acetyltransferase glycine radical; ATP-cone domain protein; manually curated; KEGG: kva:Kvar_4605 anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase YP_003943440.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: kva:Kvar_4606 anaerobic ribonucleoside-triphosphate reductase activating protein YP_003943441.1 KEGG: ent:Ent638_0433 transcriptional antiterminator, BglG; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; M trans-acting positive regulator; PRD domain protein YP_003943442.1 KEGG: kpe:KPK_5022 hypothetical protein YP_003943443.1 PFAM: protein of unknown function DUF1341; KEGG: enc:ECL_00649 hypothetical protein YP_003943444.1 KEGG: enc:ECL_00648 putative pyridoxal phosphate-dependent enzyme; TIGRFAM: pyridoxal phosphate-dependent enzyme; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase YP_003943445.1 PFAM: amidohydrolase; KEGG: sew:SeSA_A4696 dihydroorotase YP_003943446.1 KEGG: esa:ESA_00251 hypothetical protein YP_003943447.1 KEGG: kva:Kvar_4613 putative inner membrane protein YP_003943448.1 KEGG: enc:ECL_00644 putative cytoplasmic protein YP_003943449.1 KEGG: cko:CKO_03590 hypothetical protein YP_003943450.1 KEGG: kva:Kvar_4616 PRD domain protein; manually curated; PFAM: PRD domain protein YP_003943451.1 KEGG: kva:Kvar_4617 cytochrome b562; manually curated; PFAM: cytochrome b562 YP_003943452.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: kva:Kvar_4618 peptidase U62 modulator of DNA gyrase YP_003943453.1 PFAM: protein of unknown function DUF615; KEGG: enc:ECL_00639 hypothetical protein YP_003943454.1 KEGG: see:SNSL254_A4781 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_003943455.1 PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: cko:CKO_03598 fructose-1,6-bisphosphatase YP_003943456.1 KEGG: cko:CKO_03599 hypothetical protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer YP_003943457.1 PFAM: inner-membrane translocator; KEGG: enc:ECL_00634 inner membrane ABC transporter permease YP_003943458.1 PFAM: inner-membrane translocator; KEGG: kpn:KPN_04624 sugar ABC transporter membrane protein YP_003943459.1 KEGG: kva:Kvar_4626 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003943460.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cko:CKO_03603 hypothetical protein YP_003943461.1 KEGG: ent:Ent638_0411 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase YP_003943462.1 KEGG: esa:ESA_00230 hypothetical protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_003943463.1 PFAM: AIG2 family protein; KEGG: kva:Kvar_4631 AIG2 family protein YP_003943464.1 PFAM: protein of unknown function DUF490; KEGG: cko:CKO_03609 hypothetical protein YP_003943465.1 KEGG: cko:CKO_03610 hypothetical protein; manually curated; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein YP_003943466.1 PFAM: Methionine sulfoxide reductase A; manually curated; KEGG: cro:ROD_32801 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase YP_003943467.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: enc:ECL_00615 hypothetical protein YP_003943468.1 PFAM: protein of unknown function DUF1107; KEGG: enc:ECL_00614 hypothetical protein YP_003943469.1 PFAM: Conserved hypothetical protein, YtfJ; KEGG: enc:ECL_00613 putative transcriptional regulator YP_003943470.1 TIGRFAM: amidohydrolase; KEGG: str:Sterm_1689 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003943471.1 manually curated; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; KEGG: cro:ROD_32691 CysQ protein; PFAM: inositol monophosphatase YP_003943472.1 KEGG: ent:Ent638_0392 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; PFAM: 5'-Nucleotidase domain-containing protein; metallophosphoesterase YP_003943473.1 PFAM: helix-turn-helix HxlR type; KEGG: cko:CKO_03617 hypothetical protein YP_003943474.1 KEGG: cko:CKO_03618 hypothetical protein YP_003943475.1 KEGG: ent:Ent638_0382 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003943476.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cko:CKO_03621 hypothetical protein YP_003943477.1 KEGG: eum:ECUMN_4746 iron-sulfur cluster repair di-iron protein; TIGRFAM: iron-sulfur cluster repair di-iron protein; PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein YP_003943478.1 PFAM: amino acid permease-associated region; KEGG: cko:CKO_03624 D-alanine/D-serine/glycine permease YP_003943479.1 KEGG: cko:CKO_03625 peptidyl-prolyl cis-trans isomerase; PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein YP_003943480.1 PFAM: Opacity-associated protein A domain protein; KEGG: kpu:KP1_0473 putative cell envelope opacity-associated protein A YP_003943481.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ent:Ent638_0375 hypothetical protein YP_003943482.1 KEGG: ent:Ent638_0374 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like YP_003943483.1 KEGG: spe:Spro_0448 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18 YP_003943484.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cko:CKO_03631 primosomal replication protein N YP_003943485.1 KEGG: cko:CKO_03633 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like YP_003943486.1 PFAM: protein of unknown function DUF1471; KEGG: enc:ECL_00593 hypothetical protein YP_003943487.1 PFAM: class II aldolase/adducin family protein; KEGG: enc:ECL_00592 L-ribulose-5-phosphate 4-epimerase YP_003943488.1 TIGRFAM: hexulose-6-phosphate isomerase; KEGG: eck:EC55989_4754 L-xylulose 5-phosphate 3-epimerase; PFAM: Xylose isomerase domain-containing protein TIM barrel YP_003943489.1 PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: enc:ECL_00590 hypothetical protein YP_003943490.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: enc:ECL_00589 hypothetical protein YP_003943491.1 KEGG: sea:SeAg_B4662 PTS system L-ascorbate-specific transporter subunit IIB; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit YP_003943492.1 KEGG: set:SEN4149 PTS system ascorbate-specific transporter subunit IIC YP_003943493.1 KEGG: enc:ECL_00586 putative beta-lactamase-like protein YP_003943494.1 KEGG: sbc:SbBS512_E4720 transcriptional repressor UlaR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003943495.1 KEGG: kva:Kvar_4671 phospholipase/carboxylesterase YP_003943496.1 PFAM: protein of unknown function DUF1471; KEGG: kpe:KPK_5085 putative biofilm stress and motility protein A YP_003943497.1 PFAM: protein of unknown function DUF1471; KEGG: kpu:KP1_0453 hypothetical protein YP_003943498.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: enc:ECL_00580 isovaleryl CoA dehydrogenase YP_003943499.1 KEGG: cko:CKO_03652 23S rRNA (guanosine-2'-O-)-methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding YP_003943500.1 SMART: Cold shock protein; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; KEGG: kpu:KP1_0450 exoribonuclease R; PFAM: ribonuclease II; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; RNA binding S1 domain protein YP_003943501.1 KEGG: sed:SeD_A4764 transcriptional repressor NsrR; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_003943502.1 SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: cro:ROD_32371 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase YP_003943503.1 PFAM: Protein of unknown function DUF2065; KEGG: enc:ECL_00574 hypothetical protein YP_003943504.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: ent:Ent638_0358 FtsH protease regulator HflC; SMART: band 7 protein YP_003943505.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: kpu:KP1_0443 FtsH protease regulator HflK; SMART: band 7 protein YP_003943506.1 KEGG: enc:ECL_00571 putative GTPase HflX; TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related YP_003943507.1 KEGG: kva:Kvar_4684 RNA chaperone Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core YP_003943508.1 PFAM: tRNA isopentenyltransferase; manually curated; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: kva:Kvar_4685 tRNA delta(2)-isopentenylpyrophosphate transferase YP_003943509.1 manually curated; TIGRFAM: DNA mismatch repair protein MutL; KEGG: cko:CKO_03665 DNA mismatch repair protein; PFAM: DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; MutL dimerisation YP_003943510.1 KEGG: cko:CKO_03666 N-acetylmuramoyl-L-alanine amidase II; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003943511.1 PFAM: Uncharacterised protein family UPF0079, ATPase; KEGG: sdy:SDY_4421 putative ATPase YP_003943512.1 KEGG: sec:SC4232 hypothetical protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain-containing protein YP_003943513.1 KEGG: enc:ECL_00564 putative iron-sulfur cluster binding protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730 YP_003943514.1 KEGG: enc:ECL_00563 oligoribonuclease; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_003943515.1 KEGG: ses:SARI_03282 ribosome-associated GTPase; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC YP_003943516.1 KEGG: ent:Ent638_0346 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related YP_003943517.1 PFAM: MscS Mechanosensitive ion channel; KEGG: cko:CKO_03675 hypothetical protein YP_003943518.1 TIGRFAM: lysyl-tRNA synthetase-related protein GenX; KEGG: sew:SeSA_A4614 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N) YP_003943519.1 manually curated; TIGRFAM: fumarate reductase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; KEGG: enc:ECL_00558 fumarate reductase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_003943520.1 manually curated; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: enc:ECL_00557 fumarate reductase iron-sulfur subunit YP_003943521.1 PFAM: fumarate reductase subunit C; KEGG: kva:Kvar_4700 fumarate reductase subunit C YP_003943522.1 PFAM: fumarate reductase D subunit; KEGG: kva:Kvar_4701 fumarate reductase D subunit YP_003943523.1 PFAM: transposase IS4 family protein; KEGG: pct:PC1_1038 transposase IS4 family protein YP_003943524.1 PFAM: small multidrug resistance protein; KEGG: see:SNSL254_p_0090 quaternary ammonium compound-resistance protein SugE2 YP_003943525.1 KEGG: cro:ROD_32121 transcriptional regulatory protein EntR (entericidin R); PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_003943526.1 PFAM: Entericidin EcnAB; KEGG: enc:ECL_00549 entericidin B membrane lipoprotein YP_003943527.1 PFAM: Entericidin EcnAB; KEGG: cko:CKO_03685 hypothetical protein YP_003943528.1 KEGG: sdy:SDY_4390 elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein YP_003943529.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: cko:CKO_03688 hypothetical protein; PFAM: Radical SAM domain protein YP_003943530.1 KEGG: enc:ECL_00545 putative outer membrane lipoprotein YP_003943531.1 KEGG: set:SEN4100 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1 YP_003943532.1 PFAM: Chaperonin Cpn10; KEGG: cro:ROD_32051 10 kda chaperonin (protein Cpn10) (groES protein) YP_003943533.1 KEGG: kva:Kvar_4720 amino acid permease-associated region; manually curated; PFAM: amino acid permease-associated region YP_003943534.1 KEGG: cko:CKO_03695 FxsA; manually curated; PFAM: FxsA cytoplasmic membrane protein YP_003943535.1 KEGG: enc:ECL_00537 aspartate ammonia-lyase; TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; Fumarase C-like YP_003943536.1 KEGG: sed:SeD_A4721 anaerobic C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter YP_003943537.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: cro:ROD_32001 divalent cation tolerance protein YP_003943538.1 KEGG: ent:Ent638_0323 thiol:disulfide interchange protein precursor; PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain-containing protein YP_003943539.1 PFAM: regulatory protein TetR; KEGG: enc:ECL_00533 putative transcriptional regulator YP_003943540.1 KEGG: ddc:Dd586_3974 hypothetical protein YP_003943541.1 manually curated; KEGG: sec:SC2141 hypothetical protein YP_003943542.1 manually curated; KEGG: ent:Ent638_0054 hypothetical protein YP_003943543.1 KEGG: plu:plu0538 hypothetical protein YP_003943544.1 KEGG: cro:ROD_49941 putative haemolysin/haemagglutinin; TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: filamentous haemagglutinin domain protein; Haemagluttinin repeat-containing protein; protein of unknown function DUF638 hemagglutinin/hemolysin YP_003943545.1 KEGG: eic:NT01EI_3043 hypothetical protein; manually curated; PFAM: virulence-related outer membrane protein YP_003943546.1 KEGG: eic:NT01EI_3329 RTX-I toxin-activating lysine-acyltransferase apxIC; manually curated; PFAM: RTX toxin-activating protein C YP_003943547.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; Hemolysin activator HlyB domain protein; KEGG: kva:Kvar_4479 polypeptide-transport-associated domain protein ShlB-type YP_003943548.1 KEGG: kpn:KPN_01157 hypothetical protein YP_003943549.1 KEGG: pct:PC1_3954 PTS system transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; PTS system fructose subfamily IIA component; SMART: AAA ATPase YP_003943550.1 PFAM: PTS system fructose subfamily IIA component; KEGG: cro:ROD_38571 putative PTS system transport protein YP_003943551.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: see:SNSL254_A0629 PTS system sorbose-specific transporter subunit IIB YP_003943552.1 PFAM: PTS system sorbose subfamily IIB component; KEGG: sgo:SGO_0044 PTS system, IIB component YP_003943553.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: lrh:LGG_02654 PTS system transporter subunit IIC YP_003943554.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: lwe:lwe0027 PTS system mannose/fructose/sorbose family IID subunit YP_003943555.1 PFAM: glycoside hydrolase family 35; KEGG: bcz:pE33L466_0350 beta-galactosidase YP_003943556.1 PFAM: PTS system fructose subfamily IIA component; KEGG: ppe:PEPE_1761 phosphotransferase system, mannose/fructose-specific component IIA YP_003943557.1 PFAM: General secretory system II protein E domain protein; KEGG: eok:G2583_0723 bacteriophage N4 adsorption protein B YP_003943558.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: ebr:ECB_00522 bacteriophage N4 receptor, outer membrane subunit YP_003943559.1 KEGG: ssn:SSON_0513 hypothetical protein YP_003943560.1 TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: pca:Pcar_0943 pyruvate-formate lyase-activating enzyme; PFAM: Radical SAM domain protein YP_003943561.1 PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical; KEGG: str:Sterm_3026 formate C-acetyltransferase YP_003943562.1 KEGG: ppr:PBPRA2715 putative PTS system, fructose-specific IIABC component; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC YP_003943563.1 KEGG: enc:ECL_00018 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003943564.1 KEGG: eok:G2583_1234 curved DNA-binding protein; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_003943565.1 KEGG: cko:CKO_02067 chaperone-modulator protein CbpM YP_003943566.1 PFAM: Domain of unknown function DUF1814; KEGG: cro:ROD_35231 hypothetical protein YP_003943567.1 KEGG: cro:ROD_35241 hypothetical protein YP_003943568.1 KEGG: kpn:KPN_04117 hypothetical protein YP_003943569.1 KEGG: sew:SeSA_A4551 biodegradative arginine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein YP_003943570.1 KEGG: ect:ECIAI39_0540 DNA-binding transcriptional activator of porin biosynthesis; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003943571.1 KEGG: efe:EFER_3037 transcriptional regulator GadE YP_003943572.1 KEGG: mdtF; multidrug resistance protein MdtF; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_003943573.1 KEGG: sbc:SbBS512_E3909 acid-resistance membrane protein YP_003943574.1 PFAM: HNS-dependent expression A; KEGG: hdeA; protein HdeA YP_003943575.1 KEGG: efe:EFER_2931 envelope protein; thermoregulation of porin biosynthesis; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003943576.1 PFAM: amino acid permease-associated region; KEGG: set:SEN4065 arginine:agmatin antiporter YP_003943577.1 PFAM: high-affinity nickel-transporter; KEGG: ent:Ent638_0316 high-affinity nickel-transporter YP_003943579.1 KEGG: cko:CKO_03757 2-keto-3-deoxygluconate permease; TIGRFAM: 2-keto-3-deoxygluconate transporter; PFAM: 2-keto-3-deoxygluconate permease YP_003943580.1 KEGG: ent:Ent638_0313 hypothetical protein YP_003943581.1 KEGG: ent:Ent638_0312 hypothetical protein YP_003943582.1 KEGG: enc:ECL_00364 alkylphosphonate utilization operon protein PhnA; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein YP_003943583.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ent:Ent638_0310 hypothetical protein YP_003943584.1 TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; KEGG: enc:ECL_00359 phosphonate metabolism transcriptional regulator PhnF; SMART: regulatory protein GntR HTH YP_003943585.1 KEGG: enc:ECL_00358 hypothetical protein; TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG YP_003943586.1 KEGG: ent:Ent638_0304 carbon-phosphorus lyase complex subunit; TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism YP_003943587.1 PFAM: phosphonate metabolism; KEGG: ecc:c5105 PhnI protein YP_003943588.1 PFAM: phosphonate metabolism PhnJ; KEGG: ses:SARI_03377 hypothetical protein YP_003943589.1 TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: ssn:SSON_4273 phosphonate C-P lyase system protein PhnK; SMART: AAA ATPase YP_003943590.1 TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; KEGG: phnL; phosphonates transport ATP-binding protein PhnL; SMART: AAA ATPase YP_003943591.1 KEGG: ecm:EcSMS35_4561 phosphonate metabolism protein PhnM; TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase YP_003943592.1 KEGG: kpu:KP1_0357 ribose 1,5-bisphosphokinase; TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region YP_003943593.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSON_4269 aminoalkylphosphonic acid N-acetyltransferase YP_003943594.1 TIGRFAM: phosphonate metabolism protein PhnP; KEGG: enc:ECL_00349 carbon-phosphorus lyase complex accessory protein YP_003943595.1 KEGG: ent:Ent638_0292 hypothetical protein YP_003943596.1 KEGG: ent:Ent638_0290 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; response regulator receiver YP_003943597.1 KEGG: cko:CKO_03792 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003943598.1 PFAM: inner-membrane translocator; KEGG: kva:Kvar_4759 inner-membrane translocator YP_003943599.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: enc:ECL_00343 ribose ABC superfamily ATP binding protein YP_003943600.1 PFAM: protein of unknown function DUF1498; KEGG: enc:ECL_00341 hypothetical protein YP_003943601.1 TIGRFAM: ketose-bisphosphate aldolase; KEGG: ent:Ent638_0285 hypothetical protein; PFAM: ketose-bisphosphate aldolase class-II YP_003943602.1 PFAM: PfkB domain protein; KEGG: eok:G2583_4911 PfkB domain protein YP_003943603.1 KEGG: cko:CKO_03799 hypothetical protein; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003943604.1 manually curated; TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: kpe:KPK_5187 formate dehydrogenase H, alpha subunit, selenocysteine-containing; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region YP_003943605.1 manually curated; PFAM: Sel1 domain protein repeat-containing protein; KEGG: enc:ECL_00332 Sel1 domain-containing protein; SMART: Sel1 domain protein repeat-containing protein YP_003943606.1 PFAM: sodium:dicarboxylate symporter; KEGG: enc:ECL_00331 glutamate/aspartate:proton symporter YP_003943607.1 KEGG: kpu:KP1_0342 acetyl-CoA synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase YP_003943608.1 PFAM: protein of unknown function DUF485; KEGG: enc:ECL_00329 putative inner membrane protein YP_003943609.1 KEGG: enc:ECL_00328 hypothetical protein; TIGRFAM: cation/acetate symporter ActP; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_003943610.1 PFAM: LrgB family protein; KEGG: enc:ECL_00327 hypothetical protein YP_003943611.1 PFAM: LrgA family protein; KEGG: set:SEN4041 hypothetical protein YP_003943612.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cko:CKO_03821 hypothetical protein YP_003943613.1 KEGG: yjcE; uncharacterized Na(+)/H(+) exchanger YjcE; TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger YP_003943614.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: rpi:Rpic_1816 transcriptional regulator, MerR family; SMART: regulatory protein MerR YP_003943615.1 KEGG: dds:Ddes_0765 hypothetical protein YP_003943616.1 KEGG: ses:SARI_04626 hypothetical protein; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein YP_003943617.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: kva:Kvar_4781 xanthine/uracil/vitamin C permease YP_003943618.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: kpu:KP1_0326 redox-sensing activator of SoxS; SMART: regulatory protein MerR YP_003943619.1 KEGG: kva:Kvar_4784 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003943620.1 KEGG: ent:Ent638_0265 EAL domain-containing protein; PFAM: EAL domain protein; SMART: EAL domain protein YP_003943621.1 KEGG: kva:Kvar_4786 hypothetical protein YP_003943622.1 KEGG: spe:Spro_4438 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_003943623.1 PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: ent:Ent638_3582 galactosamine-6-phosphate isomerase YP_003943624.1 KEGG: cno:NT01CX_0293 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003943625.1 PFAM: PTS system fructose subfamily IIA component; KEGG: str:Sterm_3396 PTS system fructose subfamily IIA component YP_003943626.1 PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: spe:Spro_3845 PTS system mannose/fructose/sorbose family IID component YP_003943627.1 PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: cbk:CLL_A3132 PTS system sorbose-specific IIC component YP_003943628.1 KEGG: efa:EF3045 PTS system, IIB component; PFAM: PTS system sorbose subfamily IIB component YP_003943629.1 KEGG: cko:CKO_03842 single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_003943630.1 KEGG: kpu:KP1_0301 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related YP_003943631.1 KEGG: enc:ECL_00315 hypothetical protein YP_003943632.1 TIGRFAM: HAD superfamily (subfamily IIIB) phosphatase, TIGR01672; KEGG: enc:ECL_00313 acid phosphatase/phosphotransferase; PFAM: acid phosphatase (Class B) YP_003943633.1 KEGG: enc:ECL_00312 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II YP_003943634.1 TIGRFAM: alanine racemase; KEGG: set:SEN4016 alanine racemase; PFAM: alanine racemase domain protein YP_003943635.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: cro:ROD_36391 replicative DNA helicase protein DnaB; SMART: AAA ATPase YP_003943636.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ent:Ent638_0255 quinone oxidoreductase, NADPH-dependent YP_003943637.1 KEGG: enc:ECL_00308 phage shock protein G; TIGRFAM: phage shock protein G; PFAM: shock protein G YP_003943638.1 manually curated; TIGRFAM: TIM-barrel protein, yjbN family; KEGG: dusA; tRNA-dihydrouridine synthase A; PFAM: dihydrouridine synthase DuS YP_003943639.1 KEGG: enc:ECL_00305 hypothetical protein; manually curated; PFAM: Cupin 2 conserved barrel domain protein YP_003943640.1 PFAM: ferric-uptake regulator; KEGG: kpu:KP1_0287 zinc uptake transcriptional repressor YP_003943641.1 KEGG: kpu:KP1_0284 DNA-damage-inducible SOS response protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_003943642.1 KEGG: kpu:KP1_0283 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; Peptidase S24/S26A/S26B, conserved region YP_003943643.1 KEGG: kva:Kvar_4818 diacylglycerol kinase; PFAM: diacylglycerol kinase YP_003943644.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: sbo:SBO_4076 glycerol-3-phosphate acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003943645.1 KEGG: cro:ROD_37061 4-hydroxybenzoate octaprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase YP_003943646.1 KEGG: cko:CKO_03876 chorismate pyruvate lyase; PFAM: Chorismate lyase YP_003943647.1 PFAM: Maltose operon periplasmic; KEGG: enc:ECL_00294 maltose regulon periplasmic protein YP_003943648.1 PFAM: porin LamB type; KEGG: efe:EFER_4128 maltoporin YP_003943649.1 KEGG: cko:CKO_03880 maltose/maltodextrin transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase YP_003943650.1 PFAM: extracellular solute-binding protein family 1; KEGG: kpu:KP1_0275 maltose ABC transporter periplasmic protein YP_003943651.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cko:CKO_03883 maltose transporter membrane protein YP_003943652.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kva:Kvar_4827 binding-protein-dependent transport systems inner membrane component YP_003943653.1 PFAM: Phosphate-starvation-inducible E-like; KEGG: enc:ECL_00283 phosphate-starvation-inducible protein PsiE YP_003943654.1 PFAM: protein of unknown function DUF940 membrane lipoprotein; KEGG: enc:ECL_00281 putative lipoprotein YP_003943655.1 PFAM: protein of unknown function DUF1017; KEGG: ecx:EcHS_A4267 hypothetical protein YP_003943656.1 KEGG: cro:ROD_37231 putative lipoprotein YP_003943657.1 KEGG: sdy:SDY_4222 hypothetical protein YP_003943658.1 KEGG: enc:ECL_00277 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI) YP_003943659.1 TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; KEGG: cko:CKO_03894 aspartate kinase III; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein YP_003943660.1 KEGG: cro:ROD_37311 hypothetical protein YP_003943661.1 KEGG: enc:ECL_00274 23S rRNA pseudouridine synthase F; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003943662.1 KEGG: cro:ROD_37351 peptidase E; PFAM: peptidase S51 dipeptidase E YP_003943663.1 KEGG: yjbB; uncharacterized protein YjbB; TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein YP_003943664.1 KEGG: enc:ECL_00270 B12-dependent methionine synthase; TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region YP_003943665.1 KEGG: enc:ECL_00269 transcriptional repressor IclR; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR YP_003943666.1 KEGG: enc:ECL_00268 isocitrate dehydrogenase kinase/phosphatase; PFAM: Isocitrate dehydrogenase kinasephosphatase YP_003943667.1 KEGG: cro:ROD_37421 isocitrate lyase; TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase YP_003943668.1 TIGRFAM: malate synthase A; KEGG: cko:CKO_03906 malate synthase; PFAM: Malate synthase family protein YP_003943669.1 TIGRFAM: homoserine O-succinyltransferase; KEGG: kva:Kvar_4852 homoserine O-succinyltransferase; PFAM: homoserine O-succinyltransferase YP_003943670.1 SMART: AICARFT/IMPCHase bienzyme formylation region; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: enc:ECL_00264 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein YP_003943671.1 TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: ent:Ent638_0215 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain YP_003943672.1 KEGG: sec:SC4055 transcriptional regulatory protein ZraR; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase YP_003943673.1 KEGG: stm:STM4173 sensor protein ZraS; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003943674.1 KEGG: set:SEN3958 zinc resistance protein YP_003943675.1 KEGG: enc:ECL_00262 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1481 YP_003943676.1 manually curated; PFAM: histone family protein DNA-binding protein; KEGG: kva:Kvar_4860 histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_003943677.1 PFAM: protein of unknown function DUF416; KEGG: kva:Kvar_4861 protein of unknown function DUF416 YP_003943678.1 KEGG: enc:ECL_00259 endonuclease V; PFAM: Endonuclease V YP_003943679.1 TIGRFAM: uroporphyrinogen decarboxylase; KEGG: cko:CKO_02989 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_003943680.1 KEGG: ssn:SSON_4169 NADH pyrophosphatase; PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase YP_003943681.1 PFAM: regulator of RNA polymerase sigma(70) subunit Rsd/AlgQ; KEGG: ent:Ent638_0208 anti-RNA polymerase sigma 70 factor YP_003943682.1 KEGG: cko:CKO_02992 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC YP_003943683.1 KEGG: sbc:SbBS512_E4484 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_003943684.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: enc:ECL_00253 hypothetical protein YP_003943685.1 KEGG: cro:ROD_37611 thiamine biosynthesis protein; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein YP_003943686.1 PFAM: thiazole biosynthesis family protein; KEGG: kpn:KPN_04372 thiazole synthase YP_003943687.1 KEGG: enc:ECL_00250 thiamine biosynthesis protein ThiH; TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein YP_003943688.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: cko:CKO_02999 hypothetical protein YP_003943689.1 PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: ctu:Ctu_02980 N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component YP_003943690.1 PFAM: inner-membrane translocator; KEGG: bgl:bglu_1g18660 inner-membrane translocator YP_003943691.1 manually curated; PFAM: ABC transporter related; KEGG: pst:PSPTO_2368 ribose ABC transporter, ATP-binding protein; SMART: AAA ATPase YP_003943692.1 KEGG: bge:BC1002_1679 periplasmic binding protein/LacI transcriptional regulator; manually curated; PFAM: periplasmic binding protein/LacI transcriptional regulator YP_003943693.1 TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: enc:ECL_00246 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein YP_003943694.1 KEGG: kpu:KP1_0222 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; RNA polymerase Rpb2 domain 7 YP_003943695.1 KEGG: ecw:EcE24377A_4526 hypothetical protein YP_003943696.1 PFAM: ribosomal protein L10; KEGG: ctu:Ctu_02920 50S ribosomal protein L10 YP_003943697.1 KEGG: set:SEN3934 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1 YP_003943698.1 TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: kpu:KP1_0217 50S ribosomal protein L11; SMART: ribosomal protein L11 YP_003943699.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: kpu:KP1_0215 transcription antitermination protein NusG; SMART: NGN domain-containing protein; KOW domain protein YP_003943700.1 KEGG: enc:ECL_00239 preprotein translocase subunit SecE; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein YP_003943701.1 KEGG: cko:CKO_03011 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein YP_003943702.1 KEGG: kva:Kvar_4885 pantothenate kinase; manually curated; TIGRFAM: pantothenate kinase YP_003943703.1 PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; manually curated; KEGG: cko:CKO_03018 biotin--protein ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; biotin operon repressor YP_003943704.1 KEGG: set:SEN3926 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein YP_003943705.1 KEGG: ctu:Ctu_02810 protoporphyrinogen oxidase; PFAM: flavodoxin/nitric oxide synthase YP_003943706.1 KEGG: enc:ECL_04948 potassium transporter; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter YP_003943707.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: kva:Kvar_4890 protein of unknown function UPF0029 YP_003943708.1 PFAM: peptidase M24; KEGG: kpn:KPN_04341 proline dipeptidase YP_003943709.1 KEGG: cko:CKO_00188 multifunctional fatty acid oxidation complex subunit alpha; TIGRFAM: fatty oxidation complex, alpha subunit FadB; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein YP_003943710.1 KEGG: cko:CKO_00187 3-ketoacyl-CoA thiolase; TIGRFAM: acetyl-CoA C-acyltransferase FadA; acetyl-CoA acetyltransferase; PFAM: Thiolase-like YP_003943711.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cko:CKO_00185 FMN reductase YP_003943712.1 KEGG: ebr:ECB_03734 3-octaprenyl-4-hydroxybenzoate decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein YP_003943713.1 TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain-containing protein; ribosomal protein L4/L1e; KEGG: cko:CKO_00183 transcriptional activator RfaH; SMART: NGN domain-containing protein YP_003943714.1 PFAM: TatD-related deoxyribonuclease; KEGG: cko:CKO_00182 DNase TatD YP_003943715.1 KEGG: kpu:KP1_0197 twin-arginine protein translocation system subunit TatC; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase YP_003943716.1 KEGG: kpn:KPN_04333 sec-independent translocase; TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_003943717.1 KEGG: enc:ECL_04959 sec-independent protein translocase protein TatA; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_003943718.1 KEGG: enc:ECL_04960 putative ubiquinone biosynthesis protein UbiB; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain-containing protein YP_003943719.1 PFAM: Sterol-binding domain protein; KEGG: kpu:KP1_0193 hypothetical protein YP_003943720.1 KEGG: set:SEN3765 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_003943721.1 PFAM: protein of unknown function DUF195; KEGG: enc:ECL_04963 DNA recombination protein RmuC YP_003943722.1 KEGG: kva:Kvar_4905 uridine phosphorylase; TIGRFAM: uridine phosphorylase; PFAM: purine or other phosphorylase family 1 YP_003943723.1 KEGG: ent:Ent638_3963 carboxymethylenebutenolidase YP_003943724.1 TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: cko:CKO_00171 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein YP_003943725.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eum:ECUMN_4354 DNA-binding transcriptional activator, homocysteine-binding YP_003943726.1 manually curated; TIGRFAM: carboxylate/amino acid/amine transporter; KEGG: ent:Ent638_3969 carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane YP_003943727.1 manually curated; PFAM: EAL domain protein; KEGG: cko:CKO_02697 hypothetical protein; SMART: EAL domain protein YP_003943728.1 KEGG: sbc:SbBS512_E4293 putative sugar phosphatase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_003943729.1 KEGG: cko:CKO_00166 lysophospholipase L2; PFAM: alpha/beta hydrolase fold YP_003943730.1 KEGG: enc:ECL_04971 homoserine/homoserine lactone efflux protein; TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA) YP_003943731.1 KEGG: cro:ROD_39311 threonine efflux protein; TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA) YP_003943732.1 TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; KEGG: cko:CKO_00161 ATP-dependent DNA helicase RecQ; SMART: HRDC domain protein; helicase domain protein; DEAD-like helicase YP_003943733.1 KEGG: ent:Ent638_3975 phospholipase A; PFAM: phospholipase A1 YP_003943734.1 PFAM: thioesterase superfamily protein; KEGG: enc:ECL_04975 hypothetical protein YP_003943735.1 KEGG: cro:ROD_39351 hypothetical protein; TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane YP_003943736.1 PFAM: fatty acid desaturase; KEGG: ent:Ent638_2352 fatty acid desaturase YP_003943737.1 KEGG: kva:Kvar_1901 hypothetical protein YP_003943738.1 KEGG: kpu:KP1_0173 magnesium/nickel/cobalt transporter CorA; TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein YP_003943739.1 KEGG: set:SEN3748 DNA-dependent helicase II; TIGRFAM: DNA helicase II; PFAM: UvrD/REP helicase YP_003943740.1 KEGG: ent:Ent638_3980 flavin mononucleotide phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003943741.1 KEGG: kva:Kvar_4922 tyrosine recombinase XerC; TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein YP_003943742.1 PFAM: protein of unknown function DUF484; KEGG: sea:SeAg_B4176 hypothetical protein YP_003943743.1 KEGG: ecg:E2348C_4109 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_003943744.1 manually curated; KEGG: kpu:KP1_0167 hypothetical protein YP_003943745.1 KEGG: kpe:KPK_5372 frataxin-like protein; TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein YP_003943746.1 KEGG: enc:ECL_04985 adenylate cyclase; PFAM: adenylate cyclase class-I YP_003943747.1 KEGG: ecm:EcSMS35_4170 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_003943748.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: kpu:KP1_0162 uroporphyrinogen-III synthase YP_003943749.1 KEGG: cko:CKO_00145 putative uroporphyrinogen III C-methyltransferase; PFAM: protein of unknown function DUF513 hemX YP_003943750.1 KEGG: sbc:SbBS512_E4261 putative protoheme IX biogenesis protein; TIGRFAM: HemY protein; PFAM: HemY domain protein YP_003943751.1 KEGG: ent:Ent638_3991 hypothetical protein YP_003943752.1 PFAM: amino acid permease-associated region; KEGG: enc:ECL_04991 putative transport protein YifK YP_003943753.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; KEGG: ent:Ent638_3993 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; PFAM: glycosyl transferase WecB/TagA/CpsF YP_003943754.1 PFAM: WzyE family protein; KEGG: enc:ECL_04993 putative common antigen polymerase YP_003943755.1 PFAM: 4-alpha-L-fucosyltransferase; KEGG: set:SEN3732 4-alpha-L-fucosyltransferase YP_003943756.1 PFAM: polysaccharide biosynthesis protein; KEGG: kpn:KPN_04292 entero common antigen translocase YP_003943757.1 KEGG: enc:ECL_04996 TDP-4-oxo-6-deoxy-D-glucose transaminase; TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_003943758.1 KEGG: kpn:KPN_04290 TDP-fucosamine acetyltransferase; TIGRFAM: TDP-D-fucosamine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_003943759.1 KEGG: cro:ROD_39601 UDP-N-acetyl-D-mannosamine dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_003943760.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: kva:Kvar_4942 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003943761.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: kva:Kvar_4943 lipopolysaccharide biosynthesis protein YP_003943762.1 KEGG: sbc:SbBS512_E4137 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: Glycosyl transferase, family 4, conserved region YP_003943763.1 TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; KEGG: cro:ROD_39641 transcription termination factor; SMART: Cold shock protein; AAA ATPase YP_003943764.1 KEGG: kva:Kvar_4946 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein YP_003943765.1 KEGG: cro:ROD_39671 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003943766.1 manually curated; KEGG: cko:CKO_00121 guanosine pentaphosphate phosphohydrolase; PFAM: Ppx/GppA phosphatase YP_003943767.1 manually curated; TIGRFAM: ATP-dependent DNA helicase Rep; KEGG: enc:ECL_05006 ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase YP_003943768.1 KEGG: cko:CKO_00119 hypothetical protein; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC YP_003943769.1 PFAM: purine or other phosphorylase family 1; KEGG: ses:SARI_03742 hypothetical protein YP_003943770.1 KEGG: sea:SeAg_B4136 cyclic nucleotide-binding domain protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding YP_003943771.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ctu:Ctu_02140 peptidyl-prolyl cis-trans isomerase C YP_003943772.1 TIGRFAM: ketol-acid reductoisomerase; KEGG: cko:CKO_00113 ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase catalytic domain-containing protein YP_003943773.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ilvY; HTH-type transcriptional regulator IlvY YP_003943774.1 KEGG: sea:SeAg_B4005 phosphotransferase system HPr enzyme; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_003943775.1 PFAM: Dak phosphatase; KEGG: oan:Oant_4367 Dak phosphatase YP_003943776.1 KEGG: oan:Oant_4368 glycerone kinase; PFAM: Dak kinase YP_003943777.1 PFAM: class II aldolase/adducin family protein; KEGG: cdl:CDR20291_2175 sugar phosphate aldolase YP_003943778.1 PFAM: PRD domain protein; M trans-acting positive regulator; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: bmq:BMQ_3205 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_003943779.1 PFAM: PTS system Galactitol-specific IIC component; KEGG: lsg:lse_2086 PTS system, galactitol-specific, IIC component, putative YP_003943780.1 PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: lsg:lse_2087 PTS system galactitol-specific enzyme IIB component YP_003943781.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: bpu:BPUM_1166 PTS family fructose/mannitol porter component IIA YP_003943782.1 KEGG: ect:ECIAI39_3014 threonine dehydratase; TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Threonine dehydratase domain-containing protein YP_003943783.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: sbc:SbBS512_E4149 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003943784.1 KEGG: set:SEN3709 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV YP_003943785.1 KEGG: enc:ECL_05013 acetolactate synthase 2 regulatory subunit YP_003943786.1 manually curated; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; KEGG: enc:ECL_05014 acetolactate synthase 2 catalytic subunit; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein YP_003943787.1 SMART: AAA ATPase; manually curated; TIGRFAM: Mg chelatase, subunit ChlI; KEGG: ses:SARI_03752 putative ATP-dependent protease; PFAM: magnesium chelatase ChlI subunit YP_003943788.1 PFAM: protein of unknown function DUF413; KEGG: enc:ECL_05016 hypothetical protein YP_003943789.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_00103 transcriptional regulator HdfR YP_003943790.1 TIGRFAM: glutamate racemase; KEGG: kpu:KP1_0122 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003943791.1 KEGG: esa:ESA_03800 vitamin B12/cobalamin outer membrane transporter; TIGRFAM: TonB-dependent vitamin B12 receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_003943792.1 KEGG: eum:ECUMN_4496 tRNA (uracil-5-)-methyltransferase; TIGRFAM: tRNA (uracil-5-)-methyltransferase; PFAM: (Uracil-5)-methyltransferase YP_003943793.1 PFAM: CHAD domain containing protein; KEGG: pla:Plav_1232 CHAD domain-containing protein YP_003943794.1 PFAM: protein of unknown function DUF1422; KEGG: cko:CKO_03028 hypothetical protein YP_003943795.1 PFAM: regulatory protein TetR; KEGG: kva:Kvar_4969 transcriptional regulator, TetR family YP_003943796.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sea:SeAg_B4367 soluble pyridine nucleotide transhydrogenase YP_003943797.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kpu:KP1_0115 DNA-binding transcriptional regulator OxyR YP_003943798.1 KEGG: enc:ECL_05028 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase YP_003943799.1 KEGG: cko:CKO_03035 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003943800.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: ent:Ent638_4028 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_003943801.1 KEGG: efe:EFER_3806 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein YP_003943802.1 KEGG: kva:Kvar_4976 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase, C-terminal region YP_003943803.1 KEGG: efe:EFER_3809 putative DNA-binding transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003943804.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; KEGG: cro:ROD_37921 fructose-like specific PTS system EIIB component 3 YP_003943805.1 TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: seg:SG3302 pyruvate formate lyase II activase; PFAM: Radical SAM domain protein YP_003943806.1 TIGRFAM: pyruvate formate-lyase; KEGG: ecm:EcSMS35_4398 putative formate acetyltransferase 2; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical YP_003943807.1 KEGG: sdy:SDY_3785 putative fructose-like phosphotransferase EIIB subunit 2; TIGRFAM: PTS system, fructose-specific, IIB subunnit YP_003943808.1 KEGG: cko:CKO_03045 putative fructose-like permease EIIC subunit 2; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC YP_003943809.1 KEGG: efe:EFER_3815 fused putative PTS enzymes: HPr component ; enzyme I component ; enzyme IIA component; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; phosphoryl transfer system HPr; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 YP_003943810.1 TIGRFAM: transaldolase; KEGG: kva:Kvar_4979 transaldolase; PFAM: Transaldolase YP_003943811.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ent:Ent638_4031 glycerol dehydrogenase YP_003943812.1 KEGG: str:Sterm_3705 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_003943813.1 TIGRFAM: pyruvate formate-lyase; KEGG: str:Sterm_3703 pyruvate formate-lyase; PFAM: pyruvate formate-lyase PFL; formate C-acetyltransferase glycine radical YP_003943814.1 TIGRFAM: glycyl-radical enzyme activating protein family; KEGG: str:Sterm_3704 glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein YP_003943815.1 KEGG: tpd:Teth39_0992 glucosamine-6-phosphate deaminase; TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase YP_003943816.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: efa:EF3044 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_003943817.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: eoj:ECO26_4641 putative permease YP_003943818.1 KEGG: cko:CKO_03050 hypothetical protein; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase YP_003943819.1 KEGG: enc:ECL_01091 hypothetical protein YP_003943820.1 KEGG: pwa:Pecwa_2417 putative lipoprotein YP_003943821.1 KEGG: pwa:Pecwa_2418 hypothetical protein YP_003943822.1 manually curated; KEGG: ecc:c1209 hypothetical protein YP_003943823.1 KEGG: pap:PSPA7_0046 hypothetical protein YP_003943824.1 KEGG: ddc:Dd586_3981 hypothetical protein YP_003943825.1 manually curated; KEGG: ddc:Dd586_3982 filamentous hemagglutinin family outer membrane protein YP_003943826.1 manually curated; KEGG: cbk:CLL_A1648 hypothetical protein YP_003943827.1 KEGG: ypb:YPTS_3643 hypothetical protein YP_003943828.1 manually curated; KEGG: plu:plu1354 hypothetical protein YP_003943829.1 KEGG: pay:PAU_01485 putative adhesin/hemagglutinin/hemolysin YP_003943830.1 KEGG: pay:PAU_00452 otthump00000017444 (fragment) YP_003943831.1 manually curated; KEGG: pay:PAU_00451 hemolysin/hemagglutinin-like protein HecA precursor YP_003943832.1 KEGG: ddc:Dd586_3961 hypothetical protein YP_003943833.1 KEGG: vap:Vapar_2290 YD repeat protein YP_003943834.1 PFAM: plasmid stabilization system; KEGG: ddc:Dd586_1920 addiction module toxin, RelE/StbE family YP_003943835.1 KEGG: ddc:Dd586_1919 putative DNA-damage-inducible protein J YP_003943836.1 manually curated YP_003943837.1 KEGG: eca:ECA0121 hypothetical protein; manually curated; PFAM: protein of unknown function DUF596 YP_003943838.1 PFAM: protein of unknown function DUF638 hemagglutinin/hemolysin; KEGG: cro:ROD_29391 putative fimbrial adhesin YP_003943839.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; Hemolysin activator HlyB domain protein; KEGG: enc:ECL_04452 TPS family two-partner secretion family member CdiB YP_003943840.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: cko:CKO_03051 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_003943841.1 PFAM: nucleoside recognition domain protein; KEGG: sew:SeSA_A4770 transporter gate domain protein YP_003943842.1 PFAM: nucleoside recognition domain protein; KEGG: ses:SARI_03062 hypothetical protein YP_003943843.1 KEGG: sew:SeSA_A4768 isoaspartyl dipeptidase; TIGRFAM: isoaspartyl dipeptidase; PFAM: amidohydrolase YP_003943844.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: set:SEN4272 putative DNA-binding transcriptional regulator YP_003943845.1 KEGG: sew:SeSA_A4766 aspartate racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003943846.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_03052 hypothetical protein YP_003943847.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: cko:CKO_03053 hypothetical protein YP_003943848.1 KEGG: cko:CKO_03054 bifunctional aspartate kinase II/homoserine dehydrogenase II; TIGRFAM: aspartate kinase; PFAM: homoserine dehydrogenase; aspartate/glutamate/uridylate kinase; homoserine dehydrogenase NAD-binding YP_003943849.1 KEGG: cro:ROD_38041 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_003943850.1 PFAM: Methionine repressor MetJ; KEGG: enc:ECL_05040 transcriptional repressor for methionine biosynthesis YP_003943851.1 KEGG: ses:SARI_03560 hypothetical protein; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31 YP_003943852.1 TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: kpn:KPN_04230 primosome assembly protein PriA; SMART: DEAD-like helicase ; helicase domain protein YP_003943853.1 KEGG: cko:CKO_03060 DNA-binding transcriptional regulator CytR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003943854.1 KEGG: enc:ECL_05044 essential cell division protein; TIGRFAM: cell division protein FtsN; PFAM: Sporulation domain-containing protein YP_003943855.1 PFAM: 20S proteasome A and B subunits; KEGG: kva:Kvar_4991 20S proteasome A and B subunits YP_003943856.1 TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; KEGG: kpu:KP1_0086 ATP-dependent protease ATP-binding subunit HslU; SMART: AAA ATPase YP_003943857.1 KEGG: enc:ECL_05047 1,4-dihydroxy-2-naphthoate octaprenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase YP_003943858.1 KEGG: ent:Ent638_4044 ribonuclease activity regulator protein RraA; TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase YP_003943859.1 KEGG: enc:ECL_05061 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase YP_003943860.1 KEGG: cko:CKO_03086 ferrous iron efflux protein F; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_003943861.1 PFAM: protein of unknown function Spy-related; KEGG: sew:SeSA_A4277 periplasmic repressor CpxP YP_003943862.1 KEGG: kva:Kvar_4998 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_003943863.1 KEGG: kpu:KP1_0078 two-component sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_003943864.1 PFAM: MOSC domain containing protein; 3-alpha domain protein; KEGG: kpn:KPN_04218 hypothetical protein YP_003943865.1 PFAM: dihydrodipicolinate synthetase; KEGG: cro:ROD_38421 putative lyase YP_003943866.1 KEGG: cko:CKO_03092 2-keto-3-deoxygluconate permease; TIGRFAM: 2-keto-3-deoxygluconate transporter; PFAM: 2-keto-3-deoxygluconate permease YP_003943867.1 PFAM: Manganese/iron superoxide dismutase-like; KEGG: kva:Kvar_5001 superoxide dismutase YP_003943868.1 KEGG: cro:ROD_38441 L rhamnose-proton symporter; TIGRFAM: L-rhamnose-proton symporter, RhaT family, DMT superfamily; PFAM: RhaT l-rhamnose-proton symport 2 YP_003943869.1 KEGG: enc:ECL_05069 L-rhamnose operon transcriptional activator RhaR; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003943870.1 KEGG: cko:CKO_03099 transcriptional activator RhaS; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_003943871.1 KEGG: kpe:KPK_5467 rhamnulokinase; TIGRFAM: rhamnulokinase; PFAM: Carbohydrate kinase, FGGY-like YP_003943872.1 TIGRFAM: L-rhamnose isomerase; KEGG: kva:Kvar_5006 L-rhamnose isomerase; PFAM: L-rhamnose isomerase YP_003943873.1 TIGRFAM: rhamnulose-1-phosphate aldolase; KEGG: cro:ROD_38491 rhamnulose-1-phosphate aldolase; PFAM: class II aldolase/adducin family protein YP_003943874.1 KEGG: eum:ECUMN_4429 L-rhamnose mutarotase; TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718 YP_003943875.1 KEGG: kva:Kvar_5020 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003943876.1 PFAM: AzlC family protein; KEGG: ent:Ent638_4080 AzlC family protein YP_003943877.1 PFAM: branched-chain amino acid transport; KEGG: cko:CKO_03109 hypothetical protein YP_003943878.1 PFAM: protein of unknown function DUF1471; KEGG: ent:Ent638_4082 hypothetical protein YP_003943879.1 manually curated; TIGRFAM: formate dehydrogenase family accessory protein FdhD; KEGG: kva:Kvar_5031 formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD YP_003943880.1 KEGG: ent:Ent638_4084 formate dehydrogenase; manually curated; PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase YP_003943881.1 TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: kva:Kvar_5033 formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_003943882.1 KEGG: ses:SARI_03631 hypothetical protein; TIGRFAM: formate dehydrogenase, beta subunit; PFAM: Formate dehydrogenase transmembrane domain protein YP_003943883.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: set:SEN3824 formate dehydrogenase-O subunit gamma YP_003943884.1 KEGG: set:SEN3823 formate dehydrogenase accessory protein FdhE; TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein YP_003943885.1 PFAM: PilT protein domain protein; KEGG: spq:SPAB_04995 hypothetical protein YP_003943886.1 KEGG: cko:CKO_03122 hypothetical protein YP_003943887.1 KEGG: cko:CKO_03124 hypothetical protein; TIGRFAM: thioesterase domain protein; PFAM: Thioesterase putative; GCN5-related N-acetyltransferase YP_003943888.1 KEGG: dtd; D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_003943889.1 KEGG: ecg:E2348C_4187 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN YP_003943890.1 KEGG: ent:Ent638_4093 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003943891.1 PFAM: regulatory protein LuxR; KEGG: sek:SSPA3369 hypothetical protein YP_003943892.1 KEGG: cko:CKO_03128 hypothetical protein; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; Pertactin YP_003943893.1 PFAM: major facilitator superfamily MFS_1; KEGG: eoh:ECO103_4297 putative transporter YP_003943894.1 PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: ect:ECIAI39_3127 putative sugar phosphate isomerase YP_003943895.1 KEGG: eoj:ECO26_4718 putative DNA-binding transcriptional regulator; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain-containing protein; SMART: regulatory protein GntR HTH YP_003943896.1 KEGG: kpu:KP1_0031 GTP-binding protein; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein YP_003943897.1 KEGG: enc:ECL_05111 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp YP_003943898.1 KEGG: kpu:KP1_0029 nitrogen regulation protein NR(II); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_003943899.1 TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: cro:ROD_38931 nitrogen regulation protein NR(I) (two-component system response regulator); SMART: response regulator receiver; AAA ATPase YP_003943900.1 KEGG: ebd:ECBD_4160 hypothetical protein YP_003943901.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; KEGG: sfv:SFV_3634 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_003943902.1 PFAM: protein of unknown function DUF414; KEGG: enc:ECL_05116 hypothetical protein YP_003943903.1 KEGG: kva:Kvar_5051 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related YP_003943904.1 TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: cko:CKO_03151 DNA polymerase I; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; DNA-directed DNA polymerase YP_003943905.1 KEGG: enc:ECL_05120 putative acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003943906.1 PFAM: DSBA oxidoreductase; KEGG: kva:Kvar_5054 DsbA oxidoreductase YP_003943907.1 PFAM: aminoglycoside phosphotransferase; KEGG: enc:ECL_05122 serine/threonine protein kinase YP_003943908.1 PFAM: protein of unknown function DUF1040; KEGG: enc:ECL_05123 hypothetical protein YP_003943909.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: enc:ECL_05124 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003943910.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; KEGG: cko:CKO_03158 molybdopterin-guanine dinucleotide biosynthesis protein B YP_003943911.1 KEGG: kva:Kvar_5059 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_003943912.1 KEGG: kva:Kvar_5060 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1 YP_003943913.1 KEGG: kpe:KPK_5522 transcriptional repressor RbsR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003943914.1 KEGG: efe:EFER_4051 ribokinase; TIGRFAM: ribokinase; PFAM: PfkB domain protein YP_003943915.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: efe:EFER_4050 D-ribose transporter subunit RbsB YP_003943916.1 PFAM: inner-membrane translocator; KEGG: enc:ECL_05131 ribose transport system permease protein YP_003943917.1 KEGG: efe:EFER_4048 D-ribose transporter ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_003943918.1 PFAM: RbsD or FucU transport; KEGG: ent:Ent638_4116 D-ribose pyranase YP_003943919.1 KEGG: kva:Kvar_5067 potassium uptake protein; TIGRFAM: potassium uptake protein; PFAM: K potassium transporter YP_003943920.1 KEGG: kpu:KP1_0005 regulatory ATPase RavA; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_003943921.1 SMART: von Willebrand factor type A; KEGG: sew:SeSA_A4090 hypothetical protein YP_003943922.1 TIGRFAM: aspartate/ammonia ligase; KEGG: enc:ECL_05137 asparagine synthetase AsnA; PFAM: aspartate--ammonia ligase YP_003943923.1 KEGG: cko:CKO_00083 DNA-binding transcriptional regulator AsnC; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_003943924.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: enc:ECL_05139 flavodoxin YP_003943925.1 KEGG: kva:Kvar_5073 glucose inhibited division protein A; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A YP_003943926.1 KEGG: cko:CKO_00080 16S rRNA methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein YP_003943927.1 PFAM: ATP synthase I chain; KEGG: kva:Kvar_5075 ATP synthase I chain YP_003943928.1 KEGG: enc:ECL_05143 F0F1 ATP synthase subunit A; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit YP_003943929.1 KEGG: cro:ROD_40031 ATP synthase subunit C; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit YP_003943930.1 KEGG: kva:Kvar_5078 ATP synthase F0, B subunit; TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit YP_003943931.1 KEGG: enc:ECL_05146 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit YP_003943932.1 KEGG: cro:ROD_40061 ATP synthase alpha subunit; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_003943933.1 KEGG: cko:CKO_00071 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit YP_003943934.1 TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: ses:SARI_03786 F0F1 ATP synthase subunit beta; SMART: AAA ATPase YP_003943935.1 KEGG: ses:SARI_03787 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like YP_003943936.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: enc:ECL_05151 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein YP_003943937.1 KEGG: ent:Ent638_4136 glucosamine--fructose-6-phosphate aminotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS) YP_003943938.1 PFAM: Fimbrial protein domain-containing protein; KEGG: stt:t3659 fimbrial subunit protein YP_003943939.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: stt:t3660 fimbrial chaperone protein YP_003943940.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: etw:ECSP_4774 fimbrial usher YP_003943941.1 PFAM: Fimbrial protein domain-containing protein; KEGG: eok:G2583_4520 putative fimbrial protein YP_003943942.1 KEGG: enc:ECL_05153 phosphate transport system substrate-binding protein; TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_003943943.1 KEGG: enc:ECL_05154 phosphate transport system permease protein; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component YP_003943944.1 KEGG: enc:ECL_05155 phosphate transport system permease protein; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component YP_003943945.1 TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: kva:Kvar_5089 phosphate ABC transporter, ATPase subunit; SMART: AAA ATPase YP_003943946.1 KEGG: kva:Kvar_5090 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein YP_003943947.1 KEGG: cro:ROD_40181 putative phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_003943948.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: ses:SARI_03798 hypothetical protein YP_003943949.1 PFAM: NADPH-dependent FMN reductase; KEGG: ses:SARI_03799 hypothetical protein YP_003943950.1 KEGG: ses:SARI_03800 hypothetical protein YP_003943951.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_00055 DNA-binding transcriptional regulator YidZ YP_003943952.1 PFAM: major facilitator superfamily MFS_1; KEGG: cko:CKO_00054 multidrug efflux system protein MdtL YP_003943953.1 PFAM: periplasmic solute binding protein; KEGG: ent:Ent638_1111 periplasmic solute binding protein YP_003943954.1 KEGG: ent:Ent638_1112 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_003943955.1 PFAM: ABC-3 protein; KEGG: ent:Ent638_1113 ABC-3 protein YP_003943956.1 PFAM: ABC-3 protein; KEGG: ent:Ent638_1114 ABC-3 protein YP_003943957.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: pol:Bpro_0286 bifunctional deaminase-reductase-like YP_003943958.1 KEGG: cko:CKO_00052 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related YP_003943959.1 KEGG: cko:CKO_00051 putative inner membrane protein translocase component YidC; TIGRFAM: membrane protein insertase, YidC/Oxa1 family domain containing; membrane protein insertase, YidC/Oxa1 family; PFAM: 60 kDa inner membrane insertion protein YP_003943960.1 KEGG: sdy:SDY_4187 hypothetical protein; manually curated; PFAM: protein of unknown function DUF37 YP_003943961.1 KEGG: kva:Kvar_0003 hypothetical protein YP_003943962.1 manually curated; TIGRFAM: ribosomal protein L34; KEGG: pam:PANA_0091 RpmH; PFAM: ribosomal protein L34