; oligo-analysis -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Erwinia_amylovora_CFBP1430_uid46839/genome/Erwinia_amylovora_CFBP1430_uid46839_start_codons.wc -o $RSAT/public_html/data/genomes/Erwinia_amylovora_CFBP1430_uid46839/genome/Erwinia_amylovora_CFBP1430_uid46839_start_codon_frequencies ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Erwinia_amylovora_CFBP1430_uid46839/genome/Erwinia_amylovora_CFBP1430_uid46839_start_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Erwinia_amylovora_CFBP1430_uid46839/genome/Erwinia_amylovora_CFBP1430_uid46839_start_codon_frequencies ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 3704 ; Sum of sequence lengths 11112 ; discarded residues (other letters than ACGT) ; discarded occurrences (contain discarded residues) ; nb possible positions 3704 ; total oligo occurrences 3704 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ atg atg 0.8207343412527 3040 gtg gtg 0.1120410367171 415 ttg ttg 0.0669546436285 248 ctg ctg 0.0002699784017 1 ; Host name rsat-tagc ; Job started 2014-06-19.075226 ; Job done 2014-06-19.075227 ; Seconds 0.32 ; user 0.32 ; system 0.02 ; cuser 0 ; csystem 0