; oligo-analysis -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Escherichia_coli_3003_ensembl_72_GCA_000194665.2/genome/Escherichia_coli_3003_ensembl_72_GCA_000194665.2_stop_codons.wc -o $RSAT/public_html/data/genomes/Escherichia_coli_3003_ensembl_72_GCA_000194665.2/genome/Escherichia_coli_3003_ensembl_72_GCA_000194665.2_stop_codon_frequencies ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Escherichia_coli_3003_ensembl_72_GCA_000194665.2/genome/Escherichia_coli_3003_ensembl_72_GCA_000194665.2_stop_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Escherichia_coli_3003_ensembl_72_GCA_000194665.2/genome/Escherichia_coli_3003_ensembl_72_GCA_000194665.2_stop_codon_frequencies ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 4825 ; Sum of sequence lengths 14475 ; discarded residues (other letters than ACGT) ; discarded occurrences (contain discarded residues) ; nb possible positions 4825 ; total oligo occurrences 4825 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ taa taa 0.6064248704663 2926 tga tga 0.3173056994819 1531 tag tag 0.0750259067358 362 ctt ctt 0.0002072538860 1 ttt ttt 0.0002072538860 1 gca gca 0.0002072538860 1 acc acc 0.0002072538860 1 aaa aaa 0.0002072538860 1 aag aag 0.0002072538860 1 ; Host name jolitorax ; Job started 2013-09-30.021029 ; Job done 2013-09-30.021029 ; Seconds 1.74 ; user 1.74 ; system 0.08 ; cuser 0 ; csystem 0