-- dump date 20140619_082544 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 1355100000001 SEQ_END SEQ_END NC_022648.1 5129938 5129938 DR NC_022648.1; contig end 5129938..5129938 Escherichia coli JJ1886 1355100000002 SEQ_END SEQ_END NC_022649.1 5167 5167 DR NC_022649.1; contig end 5167..5167 Escherichia coli JJ1886 1355100000003 SEQ_END SEQ_END NC_022650.1 55956 55956 DR NC_022650.1; contig end 55956..55956 Escherichia coli JJ1886 1355100000004 SEQ_END SEQ_END NC_022651.1 110040 110040 DR NC_022651.1; contig end 110040..110040 Escherichia coli JJ1886 1355100000005 SEQ_END SEQ_END NC_022661.1 1552 1552 DR NC_022661.1; contig end 1552..1552 Escherichia coli JJ1886 1355100000006 SEQ_END SEQ_END NC_022662.1 5631 5631 DR NC_022662.1; contig end 5631..5631 Escherichia coli JJ1886 YP_008720078.1 CDS thrA NC_022648.1 337 2799 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aspartokinase I/homoserine dehydrogenase I 337..2799 Escherichia coli JJ1886 17433779 YP_008720079.1 CDS P423_00010 NC_022648.1 2801 3733 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; Derived by automated computational analysis using gene prediction method: Protein Homology.; homoserine kinase 2801..3733 Escherichia coli JJ1886 17428828 YP_008720080.1 CDS P423_00015 NC_022648.1 3734 5020 D Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine synthase 3734..5020 Escherichia coli JJ1886 17433778 YP_008720081.1 CDS P423_00020 NC_022648.1 5234 5530 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 5234..5530 Escherichia coli JJ1886 17428829 YP_008720082.1 CDS P423_00025 NC_022648.1 5570 6346 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5570..6346) Escherichia coli JJ1886 17428830 YP_008720083.1 CDS P423_00030 NC_022648.1 6416 7846 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:alanine symporter complement(6416..7846) Escherichia coli JJ1886 17428831 YP_008720084.1 CDS P423_00035 NC_022648.1 8125 9078 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transaldolase 8125..9078 Escherichia coli JJ1886 17428832 YP_008720085.1 CDS mogA NC_022648.1 9193 9780 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein MogA 9193..9780 Escherichia coli JJ1886 17428833 YP_008720086.1 CDS P423_00045 NC_022648.1 9815 10381 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(9815..10381) Escherichia coli JJ1886 17428834 YP_008720087.1 CDS P423_00050 NC_022648.1 10530 11243 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(10530..11243) Escherichia coli JJ1886 17428835 YP_008720088.1 CDS P423_00055 NC_022648.1 11269 11673 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(11269..11673) Escherichia coli JJ1886 17428836 YP_008720089.1 CDS dnaK NC_022648.1 12044 13960 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaK 12044..13960 Escherichia coli JJ1886 17428837 YP_008720090.1 CDS P423_00065 NC_022648.1 14049 15179 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaJ 14049..15179 Escherichia coli JJ1886 17428838 YP_008720091.1 CDS P423_00070 NC_022648.1 15283 15435 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(15283..15435) Escherichia coli JJ1886 17428839 YP_008720092.1 CDS P423_00075 NC_022648.1 16049 16810 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 16049..16810 Escherichia coli JJ1886 17428840 YP_008720093.1 CDS P423_00080 NC_022648.1 16831 18324 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arylsulfatase 16831..18324 Escherichia coli JJ1886 17428841 YP_008720094.1 CDS P423_00085 NC_022648.1 18798 19712 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 18798..19712 Escherichia coli JJ1886 17428842 YP_008720095.1 CDS nhaA NC_022648.1 19947 21113 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 19947..21113 Escherichia coli JJ1886 17428843 YP_008720096.1 CDS nhaR NC_022648.1 21173 22078 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 21173..22078 Escherichia coli JJ1886 17428844 YP_008720097.1 CDS P423_00100 NC_022648.1 22136 24175 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; family 31 glucosidase complement(22136..24175) Escherichia coli JJ1886 17428845 YP_008720098.1 CDS P423_00105 NC_022648.1 24203 25576 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sodium:solute symporter complement(24203..25576) Escherichia coli JJ1886 17428846 YP_008720099.1 CDS rpsT NC_022648.1 25965 26228 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S20 complement(25965..26228) Escherichia coli JJ1886 17428847 YP_008720100.1 CDS P423_00115 NC_022648.1 26331 26549 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 26331..26549 Escherichia coli JJ1886 17428848 YP_008720101.1 CDS P423_00120 NC_022648.1 26557 27498 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional riboflavin kinase/FMN adenylyltransferase 26557..27498 Escherichia coli JJ1886 17428849 YP_008720102.1 CDS ileS NC_022648.1 27541 30357 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; isoleucyl-tRNA synthetase 27541..30357 Escherichia coli JJ1886 17428850 YP_008720103.1 CDS lspA NC_022648.1 30357 30851 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein signal peptidase 30357..30851 Escherichia coli JJ1886 17428851 YP_008720104.1 CDS P423_00135 NC_022648.1 30959 31408 D rotamase; accelerates isomerization of the peptidyl prolyl bond, involved in the folding of proteases; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 30959..31408 Escherichia coli JJ1886 17428852 YP_008720105.1 CDS ispH NC_022648.1 31410 32360 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 31410..32360 Escherichia coli JJ1886 17428853 YP_008720106.1 CDS P423_00145 NC_022648.1 32426 33340 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside hydrolase 32426..33340 Escherichia coli JJ1886 17428854 YP_008720107.1 CDS P423_00150 NC_022648.1 33363 33728 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 33363..33728 Escherichia coli JJ1886 17428855 YP_008720108.1 CDS P423_00155 NC_022648.1 33889 34710 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrodipicolinate reductase 33889..34710 Escherichia coli JJ1886 17428856 YP_008720109.1 CDS P423_00160 NC_022648.1 35166 36314 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate synthase small subunit 35166..36314 Escherichia coli JJ1886 17428857 YP_008720110.1 CDS carB NC_022648.1 36332 39553 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate synthase large subunit 36332..39553 Escherichia coli JJ1886 17428858 YP_008720111.1 CDS P423_00170 NC_022648.1 39814 40209 D regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 39814..40209 Escherichia coli JJ1886 17428859 YP_008720112.1 CDS P423_00175 NC_022648.1 40328 40918 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; carnitine operon protein CaiE complement(40328..40918) Escherichia coli JJ1886 17428860 YP_008720113.1 CDS P423_00180 NC_022648.1 40924 41709 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; carnitinyl-CoA dehydratase complement(40924..41709) Escherichia coli JJ1886 17428861 YP_008720114.1 CDS caiC NC_022648.1 41818 43371 R Derived by automated computational analysis using gene prediction method: Protein Homology.; crotonobetaine/carnitine-CoA ligase complement(41818..43371) Escherichia coli JJ1886 17428862 YP_008720115.1 CDS P423_00190 NC_022648.1 43444 44661 R catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; crotonobetainyl-CoA:carnitine CoA-transferase complement(43444..44661) Escherichia coli JJ1886 17428863 YP_008720116.1 CDS P423_00195 NC_022648.1 44790 45932 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; crotonobetainyl-CoA dehydrogenase complement(44790..45932) Escherichia coli JJ1886 17428864 YP_008720117.1 CDS P423_00200 NC_022648.1 45963 47477 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter complement(45963..47477) Escherichia coli JJ1886 17428865 YP_008720118.1 CDS P423_00205 NC_022648.1 47950 48720 D required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixB 47950..48720 Escherichia coli JJ1886 17428866 YP_008720119.1 CDS P423_00210 NC_022648.1 48735 49676 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protein fixB 48735..49676 Escherichia coli JJ1886 17428867 YP_008720120.1 CDS P423_00215 NC_022648.1 49727 51013 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase FixC 49727..51013 Escherichia coli JJ1886 17428868 YP_008720121.1 CDS P423_00220 NC_022648.1 51010 51297 D necessary for anaerobic carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin FixX 51010..51297 Escherichia coli JJ1886 17428869 YP_008720122.1 CDS P423_00225 NC_022648.1 51356 52687 D Derived by automated computational analysis using gene prediction method: Protein Homology.; metabolite transporter 51356..52687 Escherichia coli JJ1886 17428870 YP_008720123.1 CDS P423_00230 NC_022648.1 52795 53325 D Required for full activity of KefC, a potassium-proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 52795..53325 Escherichia coli JJ1886 17428871 YP_008720124.1 CDS P423_00235 NC_022648.1 53318 55180 D transport system that facilitates potassium-efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 53318..55180 Escherichia coli JJ1886 17428872 YP_008720125.1 CDS folA NC_022648.1 55261 55851 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrofolate reductase 55261..55851 Escherichia coli JJ1886 17428873 YP_008720126.1 CDS P423_00245 NC_022648.1 55937 56170 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 55937..56170 Escherichia coli JJ1886 17428874 YP_008720127.1 CDS apaH NC_022648.1 56484 57332 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; diadenosine tetraphosphatase complement(56484..57332) Escherichia coli JJ1886 17428876 YP_008720128.1 CDS apaG NC_022648.1 57339 57716 R protein associated with Co2+ and Mg2+ efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter complement(57339..57716) Escherichia coli JJ1886 17428877 YP_008720129.1 CDS ksgA NC_022648.1 57719 58540 R in Escherichia coli this enzyme catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; members of this protein family have secondary functions; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase complement(57719..58540) Escherichia coli JJ1886 17428878 YP_008720130.1 CDS pdxA NC_022648.1 58537 59526 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxythreonine-4-phosphate dehydrogenase complement(58537..59526) Escherichia coli JJ1886 17428879 YP_008720131.1 CDS P423_00275 NC_022648.1 59526 60812 R Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(59526..60812) Escherichia coli JJ1886 17428880 YP_008720132.1 CDS P423_00280 NC_022648.1 60865 63219 R is involved in outer membrane permeability; Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS assembly outer membrane complex protein LptD complement(60865..63219) Escherichia coli JJ1886 17428881 YP_008720133.1 CDS djlA NC_022648.1 63474 64289 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaJ 63474..64289 Escherichia coli JJ1886 17428882 YP_008720134.1 CDS P423_00290 NC_022648.1 64439 65098 R catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA/tRNA pseudouridine synthase A complement(64439..65098) Escherichia coli JJ1886 17428883 YP_008720135.1 CDS P423_00295 NC_022648.1 65110 68016 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent helicase complement(65110..68016) Escherichia coli JJ1886 17428884 YP_008720136.1 CDS P423_00300 NC_022648.1 68181 70532 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase II complement(68181..70532) Escherichia coli JJ1886 17428885 YP_008720137.1 CDS araD NC_022648.1 70607 71302 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase complement(70607..71302) Escherichia coli JJ1886 17428886 YP_008720138.1 CDS P423_00310 NC_022648.1 71417 72919 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose isomerase complement(71417..72919) Escherichia coli JJ1886 17428887 YP_008720139.1 CDS P423_00315 NC_022648.1 72930 74630 R catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribulokinase complement(72930..74630) Escherichia coli JJ1886 17428888 YP_008720140.1 CDS P423_00320 NC_022648.1 74960 75814 D positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 74960..75814 Escherichia coli JJ1886 17428889 YP_008720141.1 CDS P423_00325 NC_022648.1 76038 77270 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RbsK 76038..77270 Escherichia coli JJ1886 17428890 YP_008720142.1 CDS P423_00330 NC_022648.1 77296 78219 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dihydrodipicolinate synthetase 77296..78219 Escherichia coli JJ1886 17428891 YP_008720143.1 CDS P423_00335 NC_022648.1 78274 79227 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter substrate-binding protein 78274..79227 Escherichia coli JJ1886 17428892 YP_008720144.1 CDS P423_00340 NC_022648.1 79276 79713 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 79276..79713 Escherichia coli JJ1886 17428893 YP_008720145.1 CDS P423_00345 NC_022648.1 79723 81210 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; C4-dicarboxylate ABC transporter permease 79723..81210 Escherichia coli JJ1886 17428894 YP_008720146.1 CDS P423_00350 NC_022648.1 81394 82158 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 81394..82158 Escherichia coli JJ1886 17428895 YP_008720147.1 CDS ssuB NC_022648.1 82272 82970 R part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; Derived by automated computational analysis using gene prediction method: Protein Homology.; aliphatic sulfonate ABC transporter ATP-binding protein complement(82272..82970) Escherichia coli JJ1886 17428896 YP_008720148.1 CDS thiP NC_022648.1 82954 84564 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine transporter membrane protein complement(82954..84564) Escherichia coli JJ1886 17428897 YP_008720149.1 CDS tbpA NC_022648.1 84540 85523 R part of the thiamine and TPP transport system tbpA-thiPQ; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine ABC transporter substrate-binding protein complement(84540..85523) Escherichia coli JJ1886 17428898 YP_008720150.1 CDS P423_00370 NC_022648.1 85687 87342 R activates sgrS under glucose-phosphate stress conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(85687..87342) Escherichia coli JJ1886 17428899 YP_008720151.1 CDS P423_00375 NC_022648.1 87431 87562 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; inhibitor of glucose transporter 87431..87562 Escherichia coli JJ1886 17428900 YP_008720152.1 CDS leuD NC_022648.1 87669 88274 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; Derived by automated computational analysis using gene prediction method: Protein Homology.; isopropylmalate isomerase complement(87669..88274) Escherichia coli JJ1886 17428901 YP_008720153.1 CDS P423_00385 NC_022648.1 88285 89685 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase large subunit complement(88285..89685) Escherichia coli JJ1886 17428902 YP_008720154.1 CDS P423_00390 NC_022648.1 89688 90779 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydrogenase complement(89688..90779) Escherichia coli JJ1886 17428903 YP_008720155.1 CDS P423_00395 NC_022648.1 90779 92350 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-isopropylmalate synthase complement(90779..92350) Escherichia coli JJ1886 17428904 YP_008720156.1 CDS leuO NC_022648.1 93186 94130 D activator for leuABCD operon; member of LysR family of transcriptional activators; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucine transcriptional activator 93186..94130 Escherichia coli JJ1886 17428905 YP_008720157.1 CDS P423_00405 NC_022648.1 94448 96172 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 94448..96172 Escherichia coli JJ1886 17428906 YP_008720158.1 CDS ilvH NC_022648.1 96175 96666 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 96175..96666 Escherichia coli JJ1886 17428907 YP_008720159.1 CDS P423_00415 NC_022648.1 96846 97850 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 96846..97850 Escherichia coli JJ1886 17428908 YP_008720160.1 CDS P423_00420 NC_022648.1 98452 98910 D MraZ; UPF0040; crystal structure shows similarity to AbrB; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein MraZ 98452..98910 Escherichia coli JJ1886 17428909 YP_008720161.1 CDS P423_00425 NC_022648.1 98912 99853 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 98912..99853 Escherichia coli JJ1886 17428910 YP_008720162.1 CDS P423_00430 NC_022648.1 99850 100215 D membrane bound cell division protein at septum containing leucine zipper motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsL 99850..100215 Escherichia coli JJ1886 17428911 YP_008720163.1 CDS P423_00435 NC_022648.1 100231 101997 D penicillin-binding protein 3; transpeptidase involved in septal peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsI 100231..101997 Escherichia coli JJ1886 17428912 YP_008720164.1 CDS murE NC_022648.1 101984 103471 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 101984..103471 Escherichia coli JJ1886 17428913 YP_008720165.1 CDS murF NC_022648.1 103468 104826 D Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 103468..104826 Escherichia coli JJ1886 17428914 YP_008720166.1 CDS mraY NC_022648.1 104820 105902 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-N-acetylmuramoyl-pentapeptide- transferase 104820..105902 Escherichia coli JJ1886 17428915 YP_008720167.1 CDS murD NC_022648.1 105905 107221 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 105905..107221 Escherichia coli JJ1886 17428916 YP_008720168.1 CDS P423_00460 NC_022648.1 107221 108465 D integral membrane protein involved in stabilizing FstZ ring during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsW 107221..108465 Escherichia coli JJ1886 17428917 YP_008720169.1 CDS murG NC_022648.1 108462 109529 D N-acetylglucosaminyl transferase; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-diphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 108462..109529 Escherichia coli JJ1886 17428918 YP_008720170.1 CDS murC NC_022648.1 109583 111058 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramate--alanine ligase 109583..111058 Escherichia coli JJ1886 17428919 YP_008720171.1 CDS ddl NC_022648.1 111051 111971 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanine--D-alanine ligase 111051..111971 Escherichia coli JJ1886 17428920 YP_008720172.1 CDS P423_00480 NC_022648.1 111973 112803 D involved in septum formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsQ 111973..112803 Escherichia coli JJ1886 17428921 YP_008720173.1 CDS ftsA NC_022648.1 112800 114062 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsA 112800..114062 Escherichia coli JJ1886 17428922 YP_008720174.1 CDS P423_00490 NC_022648.1 114123 115274 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M23 114123..115274 Escherichia coli JJ1886 17428923 YP_008720175.1 CDS lpxC NC_022648.1 115375 116292 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 115375..116292 Escherichia coli JJ1886 17428924 YP_008720176.1 CDS P423_00500 NC_022648.1 116351 117034 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; secretion monitor protein 116351..117034 Escherichia coli JJ1886 17428925 YP_008720177.1 CDS secA NC_022648.1 117096 119801 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecA 117096..119801 Escherichia coli JJ1886 17428926 YP_008720178.1 CDS P423_00510 NC_022648.1 119861 120259 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate pyrophosphohydrolase 119861..120259 Escherichia coli JJ1886 17428927 YP_008720179.1 CDS P423_00515 NC_022648.1 120347 120544 R inhibits supercoiling by DNA gyrase by binding to the GyrB subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase inhibitor complement(120347..120544) Escherichia coli JJ1886 17428928 YP_008720180.1 CDS P423_00520 NC_022648.1 120554 121297 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(120554..121297) Escherichia coli JJ1886 17428929 YP_008720181.1 CDS coaE NC_022648.1 121297 121917 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; dephospho-CoA kinase complement(121297..121917) Escherichia coli JJ1886 17428930 YP_008720182.1 CDS P423_00530 NC_022648.1 122142 123185 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanosine 5'-monophosphate oxidoreductase 122142..123185 Escherichia coli JJ1886 17428931 YP_008720183.1 CDS P423_00535 NC_022648.1 123220 124422 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV pilin biogenesis protein complement(123220..124422) Escherichia coli JJ1886 17428932 YP_008720184.1 CDS P423_00545 NC_022648.1 125807 126247 R Derived by automated computational analysis using gene prediction method: Protein Homology.; major pilin subunit complement(125807..126247) Escherichia coli JJ1886 17428934 YP_008720185.1 CDS P423_00550 NC_022648.1 126451 127344 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate-nucleotide pyrophosphorylase complement(126451..127344) Escherichia coli JJ1886 17428935 YP_008720186.1 CDS P423_00555 NC_022648.1 127432 127983 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-anhydromuranmyl-L-alanine amidase 127432..127983 Escherichia coli JJ1886 17428936 YP_008720187.1 CDS P423_00560 NC_022648.1 127980 128834 D involved in regulation of beta-lactamase; putative signaling protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 127980..128834 Escherichia coli JJ1886 17428937 YP_008720188.1 CDS P423_00565 NC_022648.1 128877 130247 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid transporter complement(128877..130247) Escherichia coli JJ1886 17428938 YP_008720189.1 CDS P423_00570 NC_022648.1 130775 132556 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 130775..132556 Escherichia coli JJ1886 17428939 YP_008720190.1 CDS P423_00575 NC_022648.1 132559 132843 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; colicin immunity protein / pyocin immunity protein 132559..132843 Escherichia coli JJ1886 17428940 YP_008720191.1 CDS P423_00580 NC_022648.1 133011 133250 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 133011..133250 Escherichia coli JJ1886 17428941 YP_008720192.1 CDS P423_00585 NC_022648.1 133251 133541 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; colicin immunity protein / pyocin immunity protein 133251..133541 Escherichia coli JJ1886 17428942 YP_008720193.1 CDS P423_00590 NC_022648.1 133708 133896 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 133708..133896 Escherichia coli JJ1886 17428943 YP_008720194.1 CDS P423_00595 NC_022648.1 133950 134240 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; colicin immunity protein / pyocin immunity protein 133950..134240 Escherichia coli JJ1886 17428944 YP_008720195.1 CDS P423_00600 NC_022648.1 134408 134647 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 134408..134647 Escherichia coli JJ1886 17428945 YP_008720196.1 CDS P423_00605 NC_022648.1 134648 134938 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; colicin immunity protein / pyocin immunity protein 134648..134938 Escherichia coli JJ1886 17428946 YP_008720197.1 CDS pdhR NC_022648.1 135394 136158 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 135394..136158 Escherichia coli JJ1886 17428947 YP_008720198.1 CDS aceE NC_022648.1 136319 138982 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate dehydrogenase 136319..138982 Escherichia coli JJ1886 17428948 YP_008720199.1 CDS aceF NC_022648.1 138997 140889 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide acetyltransferase 138997..140889 Escherichia coli JJ1886 17428949 YP_008720200.1 CDS P423_00625 NC_022648.1 141094 142521 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide dehydrogenase 141094..142521 Escherichia coli JJ1886 17428950 YP_008720201.1 CDS P423_00630 NC_022648.1 142592 144355 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(142592..144355) Escherichia coli JJ1886 17428951 YP_008720202.1 CDS P423_00635 NC_022648.1 144710 147307 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 144710..147307 Escherichia coli JJ1886 17428952 YP_008720203.1 CDS P423_00640 NC_022648.1 147482 147844 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 147482..147844 Escherichia coli JJ1886 17428953 YP_008720204.1 CDS P423_00645 NC_022648.1 147882 148676 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine decarboxylase complement(147882..148676) Escherichia coli JJ1886 17428954 YP_008720205.1 CDS P423_00650 NC_022648.1 148692 149558 R Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine synthase complement(148692..149558) Escherichia coli JJ1886 17428955 YP_008720206.1 CDS P423_00655 NC_022648.1 149664 150011 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(149664..150011) Escherichia coli JJ1886 17428956 YP_008720207.1 CDS P423_00660 NC_022648.1 150177 151727 D laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; Derived by automated computational analysis using gene prediction method: Protein Homology.; multicopper oxidase 150177..151727 Escherichia coli JJ1886 17428957 YP_008720208.1 CDS P423_00665 NC_022648.1 151774 154164 R quinoprotein glucose dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone from D-glucose and ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose dehydrogenase complement(151774..154164) Escherichia coli JJ1886 17428958 YP_008720209.1 CDS P423_00670 NC_022648.1 154370 154906 D catalyzes the formation of inosine monophosphate from hypoxanthine and 5-phospho-alpha-D-ribose 1-diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypoxanthine phosphoribosyltransferase 154370..154906 Escherichia coli JJ1886 17428959 YP_008720210.1 CDS P423_00675 NC_022648.1 154947 155609 R catalyzes the interconversion of bicarbonate and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbonic anhydrase complement(154947..155609) Escherichia coli JJ1886 17428960 YP_008720211.1 CDS P423_00680 NC_022648.1 155718 156644 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 155718..156644 Escherichia coli JJ1886 17428961 YP_008720212.1 CDS P423_00685 NC_022648.1 156641 157411 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 156641..157411 Escherichia coli JJ1886 17428962 YP_008720213.1 CDS P423_00690 NC_022648.1 157516 157956 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA 157516..157956 Escherichia coli JJ1886 17428963 YP_008720214.1 CDS P423_00695 NC_022648.1 158020 159249 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 158020..159249 Escherichia coli JJ1886 17428964 YP_008720215.1 CDS P423_00700 NC_022648.1 159253 159633 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate decarboxylase complement(159253..159633) Escherichia coli JJ1886 17428965 YP_008720216.1 CDS P423_00705 NC_022648.1 159907 160827 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 159907..160827 Escherichia coli JJ1886 17428966 YP_008720217.1 CDS P423_00710 NC_022648.1 160896 161093 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 160896..161093 Escherichia coli JJ1886 17428967 YP_008720218.1 CDS panC NC_022648.1 161175 162026 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; pantoate--beta-alanine ligase complement(161175..162026) Escherichia coli JJ1886 17428968 YP_008720219.1 CDS panB NC_022648.1 162038 162832 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(162038..162832) Escherichia coli JJ1886 17428969 YP_008720220.1 CDS P423_00725 NC_022648.1 162945 163892 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein complement(162945..163892) Escherichia coli JJ1886 17428970 YP_008720221.1 CDS P423_00730 NC_022648.1 164250 164846 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(164250..164846) Escherichia coli JJ1886 17428971 YP_008720222.1 CDS P423_00735 NC_022648.1 164873 165475 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(164873..165475) Escherichia coli JJ1886 17428972 YP_008720223.1 CDS P423_00740 NC_022648.1 165490 166062 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein StaD complement(165490..166062) Escherichia coli JJ1886 17428973 YP_008720224.1 CDS P423_00745 NC_022648.1 166079 168679 R similar to the fimbrial usher protein PapC; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(166079..168679) Escherichia coli JJ1886 17428974 YP_008720225.1 CDS P423_00750 NC_022648.1 168714 169454 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein EcpD complement(168714..169454) Escherichia coli JJ1886 17428975 YP_008720226.1 CDS P423_00755 NC_022648.1 169551 170135 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(169551..170135) Escherichia coli JJ1886 17428976 YP_008720227.1 CDS P423_00760 NC_022648.1 170483 170962 R catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(170483..170962) Escherichia coli JJ1886 17428977 YP_008720228.1 CDS pcnB NC_022648.1 170959 172272 R Polymerase that creates the 3' poly(A) tail found in some mRNA's; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; poly(A) polymerase I complement(170959..172272) Escherichia coli JJ1886 17428978 YP_008720229.1 CDS P423_00770 NC_022648.1 172416 173342 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamyl-Q tRNA(Asp) ligase complement(172416..173342) Escherichia coli JJ1886 17428979 YP_008720230.1 CDS dksA NC_022648.1 173379 173834 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(173379..173834) Escherichia coli JJ1886 17428980 YP_008720231.1 CDS P423_00780 NC_022648.1 174012 174716 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(174012..174716) Escherichia coli JJ1886 17428981 YP_008720232.1 CDS P423_00785 NC_022648.1 174731 175261 R catalyzes the ligation and cleavage of of 2'-5' linkages in RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2'-5' RNA ligase complement(174731..175261) Escherichia coli JJ1886 17428982 YP_008720233.1 CDS P423_00790 NC_022648.1 175335 177764 D similar in sequence to the ATP-dependent RNA helicase HrpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 175335..177764 Escherichia coli JJ1886 17428983 YP_008720234.1 CDS mrcB NC_022648.1 177858 180383 D penicillin-binding protein 1b; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glycosyl transferase/transpeptidase 177858..180383 Escherichia coli JJ1886 17428984 YP_008720235.1 CDS P423_00800 NC_022648.1 180724 181290 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial family protein 180724..181290 Escherichia coli JJ1886 17428985 YP_008720236.1 CDS P423_00805 NC_022648.1 181336 182052 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone FimC 181336..182052 Escherichia coli JJ1886 17428986 YP_008720237.1 CDS P423_00810 NC_022648.1 182119 184596 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 182119..184596 Escherichia coli JJ1886 17428987 YP_008720238.1 CDS P423_00815 NC_022648.1 184753 185628 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein 184753..185628 Escherichia coli JJ1886 17428988 YP_008720239.1 CDS P423_00820 NC_022648.1 185848 188097 D involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferrichrome outer membrane transporter 185848..188097 Escherichia coli JJ1886 17428989 YP_008720240.1 CDS P423_00825 NC_022648.1 188149 188946 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron-hydroxamate transporter ATP-binding protein 188149..188946 Escherichia coli JJ1886 17428990 YP_008720241.1 CDS P423_00830 NC_022648.1 188946 189836 D Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-hydroxamate transporter substrate-binding subunit 188946..189836 Escherichia coli JJ1886 17428991 YP_008720242.1 CDS P423_00835 NC_022648.1 189833 191815 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-hydroxamate transporter permease subunit 189833..191815 Escherichia coli JJ1886 17428992 YP_008720243.1 CDS P423_00840 NC_022648.1 191850 193130 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate-1-semialdehyde aminotransferase complement(191850..193130) Escherichia coli JJ1886 17428993 YP_008720244.1 CDS P423_00845 NC_022648.1 193355 194776 D Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; chloride channel protein 193355..194776 Escherichia coli JJ1886 17428994 YP_008720245.1 CDS P423_00850 NC_022648.1 194858 195202 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster insertion protein ErpA 194858..195202 Escherichia coli JJ1886 17428995 YP_008720246.1 CDS P423_00855 NC_022648.1 195249 195872 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(195249..195872) Escherichia coli JJ1886 17428996 YP_008720247.1 CDS P423_00860 NC_022648.1 195910 196710 R solute binding component of the vitamin B12 transport system BtuCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12 transporter complement(195910..196710) Escherichia coli JJ1886 17428997 YP_008720248.1 CDS P423_00865 NC_022648.1 196703 197401 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(196703..197401) Escherichia coli JJ1886 17428998 YP_008720249.1 CDS dgt NC_022648.1 197485 199002 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyguanosinetriphosphate triphosphohydrolase 197485..199002 Escherichia coli JJ1886 17428999 YP_008720250.1 CDS P423_00875 NC_022648.1 199132 200556 D protease Do; required at high temperature; degrades damaged proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease 199132..200556 Escherichia coli JJ1886 17429000 YP_008720251.1 CDS P423_00880 NC_022648.1 200711 201868 D regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; CdaR family transcriptional regulator 200711..201868 Escherichia coli JJ1886 17429001 YP_008720252.1 CDS P423_00885 NC_022648.1 201922 202308 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(201922..202308) Escherichia coli JJ1886 17429002 YP_008720253.1 CDS dapD NC_022648.1 202618 203442 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(202618..203442) Escherichia coli JJ1886 17429003 YP_008720254.1 CDS P423_00895 NC_022648.1 203473 206145 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; PII uridylyl-transferase complement(203473..206145) Escherichia coli JJ1886 17429004 YP_008720255.1 CDS P423_00900 NC_022648.1 206207 207001 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine aminopeptidase complement(206207..207001) Escherichia coli JJ1886 17429005 YP_008720256.1 CDS P423_00905 NC_022648.1 207171 208094 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S2 207171..208094 Escherichia coli JJ1886 17429006 YP_008720257.1 CDS tsf NC_022648.1 208229 209080 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.; endo-1,4-D-glucanase 208229..209080 Escherichia coli JJ1886 17429007 YP_008720258.1 CDS P423_00915 NC_022648.1 209227 209952 D Derived by automated computational analysis using gene prediction method: Protein Homology.; uridylate kinase 209227..209952 Escherichia coli JJ1886 17429008 YP_008720259.1 CDS frr NC_022648.1 210102 210659 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome recycling factor 210102..210659 Escherichia coli JJ1886 17429009 YP_008720260.1 CDS P423_00925 NC_022648.1 210751 211947 D catalyzes the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 210751..211947 Escherichia coli JJ1886 17429010 YP_008720261.1 CDS P423_00930 NC_022648.1 212133 212894 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP pyrophosphate synthase 212133..212894 Escherichia coli JJ1886 17429011 YP_008720262.1 CDS cdsA NC_022648.1 212907 213764 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-diglyceride synthase 212907..213764 Escherichia coli JJ1886 17429012 YP_008720263.1 CDS P423_00940 NC_022648.1 213776 215128 D catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc metallopeptidase RseP 213776..215128 Escherichia coli JJ1886 17429013 YP_008720264.1 CDS P423_00945 NC_022648.1 215158 217590 D part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein assembly factor YaeT 215158..217590 Escherichia coli JJ1886 17429014 YP_008720265.1 CDS P423_00950 NC_022648.1 217712 218197 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone 217712..218197 Escherichia coli JJ1886 17429015 YP_008720266.1 CDS lpxD NC_022648.1 218201 219226 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 218201..219226 Escherichia coli JJ1886 17429016 YP_008720267.1 CDS P423_00960 NC_022648.1 219331 219786 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymyristoyl-ACP dehydratase 219331..219786 Escherichia coli JJ1886 17429017 YP_008720268.1 CDS P423_00965 NC_022648.1 219790 220578 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine acyltransferase 219790..220578 Escherichia coli JJ1886 17429018 YP_008720269.1 CDS lpxB NC_022648.1 220578 221726 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid-A-disaccharide synthase 220578..221726 Escherichia coli JJ1886 17429019 YP_008720270.1 CDS rnhB NC_022648.1 221723 222319 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease HII 221723..222319 Escherichia coli JJ1886 17429020 YP_008720271.1 CDS dnaE NC_022648.1 222356 225838 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit alpha 222356..225838 Escherichia coli JJ1886 17429021 YP_008720272.1 CDS P423_00985 NC_022648.1 225851 226810 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase subunit alpha 225851..226810 Escherichia coli JJ1886 17429022 YP_008720273.1 CDS P423_00990 NC_022648.1 226908 229049 D constitutive; catalyzes the formation of cadaverine from lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine decarboxylase CadA 226908..229049 Escherichia coli JJ1886 17429023 YP_008720274.1 CDS P423_00995 NC_022648.1 229106 229495 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lyase 229106..229495 Escherichia coli JJ1886 17429024 YP_008720275.1 CDS tilS NC_022648.1 229560 230873 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA(Ile)-lysidine ligase 229560..230873 Escherichia coli JJ1886 17429025 YP_008720276.1 CDS P423_01005 NC_022648.1 230907 231167 R Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Derived by automated computational analysis using gene prediction method: Protein Homology.; Rho-binding antiterminator complement(230907..231167) Escherichia coli JJ1886 17429026 YP_008720277.1 CDS P423_01010 NC_022648.1 231154 231354 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(231154..231354) Escherichia coli JJ1886 17429027 YP_008720278.1 CDS P423_01015 NC_022648.1 231520 232065 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 231520..232065 Escherichia coli JJ1886 17429028 YP_008720279.1 CDS P423_01020 NC_022648.1 232062 232484 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 232062..232484 Escherichia coli JJ1886 17429029 YP_008720280.1 CDS P423_01025 NC_022648.1 232498 233208 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein involved with copper homeostasis and adhesion 232498..233208 Escherichia coli JJ1886 17429030 YP_008720281.1 CDS P423_01035 NC_022648.1 233364 234188 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(233364..234188) Escherichia coli JJ1886 17429032 YP_008720282.1 CDS P423_01040 NC_022648.1 234241 235959 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); Derived by automated computational analysis using gene prediction method: Protein Homology.; prolyl-tRNA synthetase complement(234241..235959) Escherichia coli JJ1886 17429033 YP_008720283.1 CDS P423_01045 NC_022648.1 236070 236777 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(236070..236777) Escherichia coli JJ1886 17429034 YP_008720284.1 CDS rcsF NC_022648.1 236774 237178 R Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein complement(236774..237178) Escherichia coli JJ1886 17429035 YP_008720285.1 CDS metQ NC_022648.1 237296 238111 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter substrate-binding protein complement(237296..238111) Escherichia coli JJ1886 17429036 YP_008720286.1 CDS P423_01060 NC_022648.1 238151 238804 R part of the MetNIQ methionine uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter permease complement(238151..238804) Escherichia coli JJ1886 17429037 YP_008720287.1 CDS glnQ NC_022648.1 238797 239828 R similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter ATP-binding protein complement(238797..239828) Escherichia coli JJ1886 17429038 YP_008720288.1 CDS P423_01070 NC_022648.1 240016 240588 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; D,D-heptose 1,7-bisphosphate phosphatase 240016..240588 Escherichia coli JJ1886 17429039 YP_008720289.1 CDS dkgB NC_022648.1 246355 247158 D catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,5-diketo-D-gluconic acid reductase 246355..247158 Escherichia coli JJ1886 17429046 YP_008720290.1 CDS P423_01110 NC_022648.1 247155 248069 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(247155..248069) Escherichia coli JJ1886 17429047 YP_008720291.1 CDS P423_01115 NC_022648.1 248310 249110 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 248310..249110 Escherichia coli JJ1886 17429048 YP_008720292.1 CDS P423_01120 NC_022648.1 249188 249958 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB 249188..249958 Escherichia coli JJ1886 17429049 YP_008720293.1 CDS mltD NC_022648.1 250007 251365 R catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(250007..251365) Escherichia coli JJ1886 17429050 YP_008720294.1 CDS P423_01130 NC_022648.1 251437 252192 R catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyacylglutathione hydrolase complement(251437..252192) Escherichia coli JJ1886 17429051 YP_008720295.1 CDS P423_01135 NC_022648.1 252226 252948 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 252226..252948 Escherichia coli JJ1886 17429052 YP_008720296.1 CDS P423_01140 NC_022648.1 252945 253412 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease H complement(252945..253412) Escherichia coli JJ1886 17429053 YP_008720297.1 CDS P423_01145 NC_022648.1 253468 254208 D 3'-5' exonuclease of DNA polymerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit epsilon 253468..254208 Escherichia coli JJ1886 17429054 YP_008720298.1 CDS P423_01155 NC_022648.1 254516 255286 R NAD(P)-binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; C-N hydrolase family amidase complement(254516..255286) Escherichia coli JJ1886 17429056 YP_008720299.1 CDS P423_01160 NC_022648.1 255440 255913 D inactivates vertebrate C-type lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; C-lysozyme inhibitor 255440..255913 Escherichia coli JJ1886 17429057 YP_008720300.1 CDS fadE NC_022648.1 255956 258400 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase complement(255956..258400) Escherichia coli JJ1886 17429058 YP_008720301.1 CDS gmhA NC_022648.1 258640 259218 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoheptose isomerase 258640..259218 Escherichia coli JJ1886 17429059 YP_008720302.1 CDS P423_01175 NC_022648.1 259423 260190 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine amidotransferase 259423..260190 Escherichia coli JJ1886 17429060 YP_008720303.1 CDS P423_01180 NC_022648.1 260161 260901 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transpeptidase complement(260161..260901) Escherichia coli JJ1886 17429061 YP_008720304.1 CDS P423_01185 NC_022648.1 261213 261962 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 261213..261962 Escherichia coli JJ1886 17429062 YP_008720305.1 CDS P423_01190 NC_022648.1 262138 262635 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 262138..262635 Escherichia coli JJ1886 17429063 YP_008720306.1 CDS flhA NC_022648.1 262855 264948 R membrane protein involved in the flagellar export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhA complement(262855..264948) Escherichia coli JJ1886 17429064 YP_008720307.1 CDS P423_01200 NC_022648.1 264932 266071 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar biosynthesis protein FlhB complement(264932..266071) Escherichia coli JJ1886 17429065 YP_008720308.1 CDS P423_01205 NC_022648.1 266061 266843 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar biosynthesis protein FliR complement(266061..266843) Escherichia coli JJ1886 17429066 YP_008720309.1 CDS fliQ NC_022648.1 266845 267117 R with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliQ complement(266845..267117) Escherichia coli JJ1886 17429067 YP_008720310.1 CDS fliP NC_022648.1 267120 267872 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliP complement(267120..267872) Escherichia coli JJ1886 17429068 YP_008720311.1 CDS P423_01220 NC_022648.1 267869 268240 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(267869..268240) Escherichia coli JJ1886 17429069 YP_008720312.1 CDS P423_01225 NC_022648.1 268233 269084 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(268233..269084) Escherichia coli JJ1886 17429070 YP_008720313.1 CDS pspF NC_022648.1 269471 270457 D transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 269471..270457 Escherichia coli JJ1886 17429071 YP_008720314.1 CDS P423_01235 NC_022648.1 270472 270813 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook-basal body protein FliE 270472..270813 Escherichia coli JJ1886 17429072 YP_008720315.1 CDS fliF NC_022648.1 270818 272464 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar M-ring protein FliF 270818..272464 Escherichia coli JJ1886 17429073 YP_008720316.1 CDS fliG NC_022648.1 272442 273452 D One of three proteins involved in switching the direction of the flagellar rotation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar motor switch protein FliG 272442..273452 Escherichia coli JJ1886 17429074 YP_008720317.1 CDS fliH NC_022648.1 273456 274166 D binds to and inhibits the function of flagella specific ATPase FliI; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar assembly protein FliH 273456..274166 Escherichia coli JJ1886 17429075 YP_008720318.1 CDS fliI NC_022648.1 274159 275499 D involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP synthase 274159..275499 Escherichia coli JJ1886 17429076 YP_008720319.1 CDS P423_01260 NC_022648.1 275502 275936 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar export protein FliJ 275502..275936 Escherichia coli JJ1886 17429077 YP_008720320.1 CDS P423_01265 NC_022648.1 275939 276334 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycerol-3-phosphate cytidylyltransferase 275939..276334 Escherichia coli JJ1886 17429078 YP_008720321.1 CDS P423_01270 NC_022648.1 276354 276701 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(276354..276701) Escherichia coli JJ1886 17429079 YP_008720322.1 CDS P423_01275 NC_022648.1 276789 277286 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(276789..277286) Escherichia coli JJ1886 17429080 YP_008720323.1 CDS P423_01280 NC_022648.1 279245 281683 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl transferase complement(279245..281683) Escherichia coli JJ1886 17429081 YP_008720324.1 CDS P423_01285 NC_022648.1 281730 282662 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lysine-N-methylase complement(281730..282662) Escherichia coli JJ1886 17429082 YP_008720325.1 CDS P423_01290 NC_022648.1 282790 283218 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lateral flagellar chaperone protein complement(282790..283218) Escherichia coli JJ1886 17429083 YP_008720326.1 CDS P423_01295 NC_022648.1 283231 283509 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; anti-sigma-28 factor FlgM complement(283231..283509) Escherichia coli JJ1886 17429084 YP_008720327.1 CDS P423_01300 NC_022648.1 283591 284328 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagella basal body P-ring formation protein FlgA complement(283591..284328) Escherichia coli JJ1886 17429085 YP_008720328.1 CDS flgB NC_022648.1 284410 284745 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgB 284410..284745 Escherichia coli JJ1886 17429086 YP_008720329.1 CDS flgC NC_022648.1 284748 285179 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgC 284748..285179 Escherichia coli JJ1886 17429087 YP_008720330.1 CDS P423_01315 NC_022648.1 285179 285892 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook capping protein 285179..285892 Escherichia coli JJ1886 17429088 YP_008720331.1 CDS P423_01320 NC_022648.1 286011 286151 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 286011..286151 Escherichia coli JJ1886 17429089 YP_008720332.1 CDS flgE NC_022648.1 286164 287366 D the hook connects flagellar basal body to the flagellar filament; Vibrio parahaemolyticus protein is associated with the lateral flagella; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook protein FlgE 286164..287366 Escherichia coli JJ1886 17429090 YP_008720333.1 CDS P423_01330 NC_022648.1 287366 288103 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar basal body rod protein FlgF 287366..288103 Escherichia coli JJ1886 17429091 YP_008720334.1 CDS flgG NC_022648.1 288182 288967 D makes up the distal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgG 288182..288967 Escherichia coli JJ1886 17429092 YP_008720335.1 CDS flgH NC_022648.1 289050 289715 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; the Yersinia have 2 copies of flgH; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar basal body L-ring protein 289050..289715 Escherichia coli JJ1886 17429093 YP_008720336.1 CDS flgI NC_022648.1 289730 290830 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring protein 289730..290830 Escherichia coli JJ1886 17429094 YP_008720337.1 CDS P423_01350 NC_022648.1 290830 291129 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; rod binding protein 290830..291129 Escherichia coli JJ1886 17429095 YP_008720338.1 CDS P423_01355 NC_022648.1 291319 292695 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook-associated protein FlgK 291319..292695 Escherichia coli JJ1886 17429096 YP_008720339.1 CDS P423_01360 NC_022648.1 292710 293639 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook protein 292710..293639 Escherichia coli JJ1886 17429097 YP_008720340.1 CDS P423_01365 NC_022648.1 293656 294633 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lateral flagellar hook associated protein 293656..294633 Escherichia coli JJ1886 17429098 YP_008720341.1 CDS P423_01370 NC_022648.1 294692 295534 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; CadC family transcriptional regulator complement(294692..295534) Escherichia coli JJ1886 17429099 YP_008720342.1 CDS P423_01375 NC_022648.1 296020 296934 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellin 296020..296934 Escherichia coli JJ1886 17429100 YP_008720343.1 CDS P423_01380 NC_022648.1 297344 298660 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook protein 297344..298660 Escherichia coli JJ1886 17429101 YP_008720344.1 CDS P423_01385 NC_022648.1 298683 299075 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar biosynthesis protein FliS 298683..299075 Escherichia coli JJ1886 17429102 YP_008720345.1 CDS P423_01390 NC_022648.1 299080 299391 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lateral flagellar chaperone protein 299080..299391 Escherichia coli JJ1886 17429103 YP_008720346.1 CDS P423_01395 NC_022648.1 299388 300449 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook-length control protein FliK 299388..300449 Escherichia coli JJ1886 17429104 YP_008720347.1 CDS P423_01400 NC_022648.1 300457 300924 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar basal body protein FliL 300457..300924 Escherichia coli JJ1886 17429105 YP_008720348.1 CDS P423_01405 NC_022648.1 300944 301660 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA polymerase sigma 70 300944..301660 Escherichia coli JJ1886 17429106 YP_008720349.1 CDS P423_01410 NC_022648.1 301673 302536 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar motor protein MotA 301673..302536 Escherichia coli JJ1886 17429107 YP_008720350.1 CDS P423_01415 NC_022648.1 302539 303462 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 302539..303462 Escherichia coli JJ1886 17429108 YP_008720351.1 CDS P423_01420 NC_022648.1 303533 304588 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase IV 303533..304588 Escherichia coli JJ1886 17429109 YP_008720352.1 CDS P423_01425 NC_022648.1 304585 305037 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase 304585..305037 Escherichia coli JJ1886 17429110 YP_008720353.1 CDS P423_01430 NC_022648.1 305215 306366 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 305215..306366 Escherichia coli JJ1886 17429111 YP_008720354.1 CDS prfH NC_022648.1 306363 306977 D similar to release factor 1 and 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 306363..306977 Escherichia coli JJ1886 17429112 YP_008720355.1 CDS P423_01440 NC_022648.1 307033 308490 R catalyzes the hydrolysis of Xaa-His dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoacyl-histidine dipeptidase complement(307033..308490) Escherichia coli JJ1886 17429113 YP_008720356.1 CDS P423_01445 NC_022648.1 308751 309209 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine phosphoribosyltransferase 308751..309209 Escherichia coli JJ1886 17429114 YP_008720357.1 CDS frsA NC_022648.1 309301 310545 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; Derived by automated computational analysis using gene prediction method: Protein Homology.; fermentation/respiration switch protein 309301..310545 Escherichia coli JJ1886 17429115 YP_008720358.1 CDS P423_01455 NC_022648.1 310603 311004 D involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 310603..311004 Escherichia coli JJ1886 17429116 YP_008720359.1 CDS P423_01460 NC_022648.1 311043 312098 R Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane phosphoporin protein E complement(311043..312098) Escherichia coli JJ1886 17429117 YP_008720360.1 CDS P423_01465 NC_022648.1 312387 313490 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl kinase 312387..313490 Escherichia coli JJ1886 17429118 YP_008720361.1 CDS P423_01470 NC_022648.1 313502 314755 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl phosphate reductase 313502..314755 Escherichia coli JJ1886 17429119 YP_008720362.1 CDS P423_01480 NC_022648.1 315309 315779 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(315309..315779) Escherichia coli JJ1886 17429121 YP_008720363.1 CDS P423_01485 NC_022648.1 316122 317369 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(316122..317369) Escherichia coli JJ1886 17429122 YP_008720364.1 CDS P423_01490 NC_022648.1 317359 318996 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; N-6 DNA methylase complement(317359..318996) Escherichia coli JJ1886 17429123 YP_008720365.1 CDS P423_01495 NC_022648.1 318990 322088 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type I restriction enzyme, R subunit complement(318990..322088) Escherichia coli JJ1886 17429124 YP_008720366.1 CDS P423_01500 NC_022648.1 322396 323154 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 322396..323154 Escherichia coli JJ1886 17429125 YP_008720367.1 CDS P423_01505 NC_022648.1 323141 324061 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 323141..324061 Escherichia coli JJ1886 17429126 YP_008720368.1 CDS P423_01510 NC_022648.1 324226 325002 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase complement(324226..325002) Escherichia coli JJ1886 17429127 YP_008720369.1 CDS P423_01515 NC_022648.1 324988 325107 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 324988..325107 Escherichia coli JJ1886 17429128 YP_008720370.1 CDS P423_01520 NC_022648.1 325210 325545 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(325210..325545) Escherichia coli JJ1886 17429129 YP_008720371.1 CDS P423_01525 NC_022648.1 325979 326164 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 325979..326164 Escherichia coli JJ1886 17429130 YP_008720372.1 CDS P423_01530 NC_022648.1 326379 326993 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 326379..326993 Escherichia coli JJ1886 17429131 YP_008720373.1 CDS P423_01535 NC_022648.1 327242 327571 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(327242..327571) Escherichia coli JJ1886 17429132 YP_008720374.1 CDS P423_01540 NC_022648.1 327878 328588 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(327878..328588) Escherichia coli JJ1886 17429133 YP_008720375.1 CDS P423_01545 NC_022648.1 328557 330200 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(328557..330200) Escherichia coli JJ1886 17429134 YP_008720376.1 CDS P423_01550 NC_022648.1 330190 332715 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(330190..332715) Escherichia coli JJ1886 17429135 YP_008720377.1 CDS P423_01555 NC_022648.1 332741 333409 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(332741..333409) Escherichia coli JJ1886 17429136 YP_008720378.1 CDS P423_01560 NC_022648.1 333466 334053 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrillin MatB complement(333466..334053) Escherichia coli JJ1886 17429137 YP_008720379.1 CDS P423_01565 NC_022648.1 334128 334718 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator complement(334128..334718) Escherichia coli JJ1886 17429138 YP_008720380.1 CDS rpmJ NC_022648.1 335754 335894 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L36 complement(335754..335894) Escherichia coli JJ1886 17429139 YP_008720381.1 CDS P423_01575 NC_022648.1 335894 336157 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L31 complement(335894..336157) Escherichia coli JJ1886 17429140 YP_008720382.1 CDS P423_01580 NC_022648.1 336522 336623 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(336522..336623) Escherichia coli JJ1886 17429141 YP_008720383.1 CDS P423_01585 NC_022648.1 337096 338238 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-dependent flavin oxidoreductase complement(337096..338238) Escherichia coli JJ1886 17429142 YP_008720384.1 CDS P423_01590 NC_022648.1 338411 339331 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(338411..339331) Escherichia coli JJ1886 17429143 YP_008720385.1 CDS P423_01595 NC_022648.1 339491 340414 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 339491..340414 Escherichia coli JJ1886 17429144 YP_008720386.1 CDS P423_01600 NC_022648.1 340614 341507 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 340614..341507 Escherichia coli JJ1886 17429145 YP_008720387.1 CDS P423_01605 NC_022648.1 341538 342527 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aldo/keto reductase complement(341538..342527) Escherichia coli JJ1886 17429146 YP_008720388.1 CDS dkgA NC_022648.1 342554 343405 R methylglyoxal reductase/beta-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,5-diketo-D-gluconic acid reductase complement(342554..343405) Escherichia coli JJ1886 17429147 YP_008720389.1 CDS P423_01615 NC_022648.1 343971 348218 D Derived by automated computational analysis using gene prediction method: Protein Homology.; invasin 343971..348218 Escherichia coli JJ1886 17429148 YP_008720390.1 CDS P423_01620 NC_022648.1 348343 349200 R regulates genes involved in response to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(348343..349200) Escherichia coli JJ1886 17429149 YP_008720391.1 CDS dkgA NC_022648.1 349448 350317 D methylglyoxal reductase/beta-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,5-diketo-D-gluconic acid reductase 349448..350317 Escherichia coli JJ1886 17429150 YP_008720392.1 CDS P423_01630 NC_022648.1 350477 351070 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(350477..351070) Escherichia coli JJ1886 17429151 YP_008720393.1 CDS P423_01635 NC_022648.1 351082 351318 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(351082..351318) Escherichia coli JJ1886 17429152 YP_008720394.1 CDS P423_01640 NC_022648.1 351427 352752 R Involved in disulfide oxidoreductase activity and electron transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridine nucleotide-disulfide oxidoreductase complement(351427..352752) Escherichia coli JJ1886 17429153 YP_008720395.1 CDS P423_01645 NC_022648.1 352979 353833 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 352979..353833 Escherichia coli JJ1886 17429154 YP_008720396.1 CDS P423_01650 NC_022648.1 354359 355078 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 354359..355078 Escherichia coli JJ1886 17429155 YP_008720397.1 CDS P423_01655 NC_022648.1 355089 356516 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid dehydrogenase 355089..356516 Escherichia coli JJ1886 17429156 YP_008720398.1 CDS P423_01660 NC_022648.1 356509 357204 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 356509..357204 Escherichia coli JJ1886 17429157 YP_008720399.1 CDS P423_01665 NC_022648.1 357447 358115 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(357447..358115) Escherichia coli JJ1886 17429158 YP_008720400.1 CDS P423_01670 NC_022648.1 358299 360590 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; autotransporter complement(358299..360590) Escherichia coli JJ1886 17429159 YP_008720401.1 CDS P423_01675 NC_022648.1 360632 361393 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(360632..361393) Escherichia coli JJ1886 17429160 YP_008720402.1 CDS P423_01680 NC_022648.1 362671 363234 R inversion of on/off regulator of fimA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase complement(362671..363234) Escherichia coli JJ1886 17429161 YP_008720403.1 CDS P423_01685 NC_022648.1 364050 364277 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 364050..364277 Escherichia coli JJ1886 17429162 YP_008720404.1 CDS P423_01695 NC_022648.1 366003 367475 R Derived by automated computational analysis using gene prediction method: Protein Homology.; betaine-aldehyde dehydrogenase complement(366003..367475) Escherichia coli JJ1886 17429164 YP_008720405.1 CDS P423_01700 NC_022648.1 367489 368076 R HTH-type; bet1; Repressor involved in choline regulation of the bet genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; BetI family transcriptional regulator complement(367489..368076) Escherichia coli JJ1886 17429165 YP_008720406.1 CDS P423_01705 NC_022648.1 368205 370238 D proton-motive-force-driven choline transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; choline transporter BetT 368205..370238 Escherichia coli JJ1886 17429166 YP_008720407.1 CDS P423_01710 NC_022648.1 371116 372204 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase 371116..372204 Escherichia coli JJ1886 17429167 YP_008720408.1 CDS P423_01715 NC_022648.1 372246 373178 R activator of the allDC-ylbA operon involved in allantoin utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(372246..373178) Escherichia coli JJ1886 17429168 YP_008720409.1 CDS P423_01720 NC_022648.1 373270 373767 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(373270..373767) Escherichia coli JJ1886 17429169 YP_008720410.1 CDS P423_01725 NC_022648.1 374025 374630 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ankyrin 374025..374630 Escherichia coli JJ1886 17429170 YP_008720411.1 CDS P423_01730 NC_022648.1 375523 377070 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 375523..377070 Escherichia coli JJ1886 17433817 YP_008720412.1 CDS P423_01735 NC_022648.1 377070 378488 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 377070..378488 Escherichia coli JJ1886 17429172 YP_008720413.1 CDS P423_01740 NC_022648.1 378641 379591 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamate kinase 378641..379591 Escherichia coli JJ1886 17429173 YP_008720414.1 CDS P423_01745 NC_022648.1 379601 380983 D metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; deaminase 379601..380983 Escherichia coli JJ1886 17429174 YP_008720415.1 CDS P423_01750 NC_022648.1 381360 382409 D Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-binding dehydrogenase 381360..382409 Escherichia coli JJ1886 17429175 YP_008720416.1 CDS P423_01755 NC_022648.1 383293 383940 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(383293..383940) Escherichia coli JJ1886 17429176 YP_008720417.1 CDS P423_01760 NC_022648.1 384111 384386 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 384111..384386 Escherichia coli JJ1886 17429177 YP_008720418.1 CDS P423_01765 NC_022648.1 384487 386073 R sigma-54 dependent activator family protein; activates the prpBCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; propionate catabolism operon regulatory protein PrpR complement(384487..386073) Escherichia coli JJ1886 17429178 YP_008720419.1 CDS prpB NC_022648.1 386312 387202 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-methylisocitrate lyase 386312..387202 Escherichia coli JJ1886 17429179 YP_008720420.1 CDS P423_01775 NC_022648.1 387362 388531 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; Derived by automated computational analysis using gene prediction method: Protein Homology.; methylcitrate synthase 387362..388531 Escherichia coli JJ1886 17429180 YP_008720421.1 CDS prpD NC_022648.1 388565 390016 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-methylcitrate dehydratase 388565..390016 Escherichia coli JJ1886 17429181 YP_008720422.1 CDS prpE NC_022648.1 390056 391942 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA synthetase 390056..391942 Escherichia coli JJ1886 17429182 YP_008720423.1 CDS codB NC_022648.1 392267 393526 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cytosine permease 392267..393526 Escherichia coli JJ1886 17429183 YP_008720424.1 CDS P423_01795 NC_022648.1 393516 394799 D Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytosine deaminase 393516..394799 Escherichia coli JJ1886 17429184 YP_008720425.1 CDS P423_01800 NC_022648.1 394920 395582 R Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose O-acetyltransferase complement(394920..395582) Escherichia coli JJ1886 17429185 YP_008720426.1 CDS lacY NC_022648.1 395597 396850 R lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactoside permease complement(395597..396850) Escherichia coli JJ1886 17429186 YP_008720427.1 CDS lacZ NC_022648.1 396902 399976 R forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-galactosidase complement(396902..399976) Escherichia coli JJ1886 17429187 YP_008720428.1 CDS lacI NC_022648.1 400099 401181 R transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer; Derived by automated computational analysis using gene prediction method: Protein Homology.; lac repressor complement(400099..401181) Escherichia coli JJ1886 17429188 YP_008720429.1 CDS mhpA NC_022648.1 402282 403946 D catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-(3-hydroxyphenyl)propionate hydroxylase 402282..403946 Escherichia coli JJ1886 17429190 YP_008720430.1 CDS mhpB NC_022648.1 403948 404892 D catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-(2,3-dihydroxyphenyl)propionate dioxygenase 403948..404892 Escherichia coli JJ1886 17429191 YP_008720431.1 CDS P423_01835 NC_022648.1 404895 405776 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase 404895..405776 Escherichia coli JJ1886 17429192 YP_008720432.1 CDS P423_01840 NC_022648.1 405786 406595 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-4-pentenoate hydratase 405786..406595 Escherichia coli JJ1886 17429193 YP_008720433.1 CDS P423_01845 NC_022648.1 406592 407542 D catalyzes the formation of acetyl-CoA from acetalaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetaldehyde dehydrogenase 406592..407542 Escherichia coli JJ1886 17429194 YP_008720434.1 CDS P423_01850 NC_022648.1 407539 408552 D catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hyroxy-2-oxovalerate aldolase 407539..408552 Escherichia coli JJ1886 17429195 YP_008720435.1 CDS P423_01855 NC_022648.1 408728 409939 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 408728..409939 Escherichia coli JJ1886 17429196 YP_008720436.1 CDS P423_01860 NC_022648.1 410041 410580 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 410041..410580 Escherichia coli JJ1886 17429197 YP_008720437.1 CDS P423_01865 NC_022648.1 410705 411538 R Derived by automated computational analysis using gene prediction method: Protein Homology.; S-formylglutathione hydrolase complement(410705..411538) Escherichia coli JJ1886 17429198 YP_008720438.1 CDS P423_01870 NC_022648.1 411631 412740 R catalyzes the formation of S-formylglutathione from S-(hydroxymethyl)glutathione; also catalyzes the formation of aldehyde or ketone from alcohols; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-(hydroxymethyl)glutathione dehydrogenase complement(411631..412740) Escherichia coli JJ1886 17429199 YP_008720439.1 CDS P423_01875 NC_022648.1 412775 413050 R DNA-binding; binds the RcnA promotor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(412775..413050) Escherichia coli JJ1886 17429200 YP_008720440.1 CDS tauA NC_022648.1 413356 414318 D with TauB and TauC is responsible for taurine uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; taurine ABC transporter substrate-binding protein 413356..414318 Escherichia coli JJ1886 17429201 YP_008720441.1 CDS P423_01885 NC_022648.1 414331 415098 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein 414331..415098 Escherichia coli JJ1886 17429202 YP_008720442.1 CDS P423_01890 NC_022648.1 415095 415922 D Derived by automated computational analysis using gene prediction method: Protein Homology.; taurine ABC transporter permease 415095..415922 Escherichia coli JJ1886 17429203 YP_008720443.1 CDS tauD NC_022648.1 415919 416770 D catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; taurine dioxygenase 415919..416770 Escherichia coli JJ1886 17429204 YP_008720444.1 CDS P423_01900 NC_022648.1 416810 417784 R Derived by automated computational analysis using gene prediction method: Protein Homology.; delta-aminolevulinic acid dehydratase complement(416810..417784) Escherichia coli JJ1886 17429205 YP_008720445.1 CDS P423_01905 NC_022648.1 418310 421297 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 418310..421297 Escherichia coli JJ1886 17429206 YP_008720446.1 CDS P423_01910 NC_022648.1 421383 422006 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 421383..422006 Escherichia coli JJ1886 17429207 YP_008720447.1 CDS P423_01915 NC_022648.1 422007 423164 R this protein has no known enzymatic function; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-lactam binding protein AmpH complement(422007..423164) Escherichia coli JJ1886 17429208 YP_008720448.1 CDS P423_01920 NC_022648.1 423516 424736 D in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin B17 transporter 423516..424736 Escherichia coli JJ1886 17429209 YP_008720449.1 CDS P423_01925 NC_022648.1 424749 425843 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 424749..425843 Escherichia coli JJ1886 17429210 YP_008720450.1 CDS P423_01930 NC_022648.1 425902 426210 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(425902..426210) Escherichia coli JJ1886 17429211 YP_008720451.1 CDS P423_01935 NC_022648.1 426443 426682 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 426443..426682 Escherichia coli JJ1886 17429212 YP_008720452.1 CDS P423_01940 NC_022648.1 426706 427800 R Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanine--D-alanine ligase complement(426706..427800) Escherichia coli JJ1886 17429213 YP_008720453.1 CDS P423_01945 NC_022648.1 428263 428523 D RpoS stabilzer during Pi starvation; anti-adapter protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-RssB factor 428263..428523 Escherichia coli JJ1886 17429214 YP_008720454.1 CDS P423_01950 NC_022648.1 428624 430039 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alkaline phosphatase 428624..430039 Escherichia coli JJ1886 17429215 YP_008720455.1 CDS P423_01955 NC_022648.1 430158 430478 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 430158..430478 Escherichia coli JJ1886 17429216 YP_008720456.1 CDS adrA NC_022648.1 430580 431695 D catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 430580..431695 Escherichia coli JJ1886 17429217 YP_008720457.1 CDS P423_01965 NC_022648.1 431712 432521 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrroline-5-carboxylate reductase complement(431712..432521) Escherichia coli JJ1886 17429218 YP_008720458.1 CDS P423_01970 NC_022648.1 432641 433099 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 432641..433099 Escherichia coli JJ1886 17429219 YP_008720459.1 CDS aroL NC_022648.1 433282 433806 D type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate kinase 433282..433806 Escherichia coli JJ1886 17429220 YP_008720460.1 CDS P423_01980 NC_022648.1 433856 434047 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 433856..434047 Escherichia coli JJ1886 17429221 YP_008720461.1 CDS P423_01985 NC_022648.1 434305 434982 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 434305..434982 Escherichia coli JJ1886 17429222 YP_008720462.1 CDS P423_01990 NC_022648.1 435054 435338 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 435054..435338 Escherichia coli JJ1886 17429223 YP_008720463.1 CDS P423_01995 NC_022648.1 435442 435585 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(435442..435585) Escherichia coli JJ1886 17429224 YP_008720464.1 CDS P423_02000 NC_022648.1 435585 435827 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 435585..435827 Escherichia coli JJ1886 17429225 YP_008720465.1 CDS rdgC NC_022648.1 435985 436962 R Required for efficient pilin antigenic variation; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase complement(435985..436962) Escherichia coli JJ1886 17429226 YP_008720466.1 CDS P423_02010 NC_022648.1 437021 437929 D catalyzes phosphorylation of fructose; cytosolic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructokinase 437021..437929 Escherichia coli JJ1886 17429227 YP_008720467.1 CDS P423_02015 NC_022648.1 438198 439466 R member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(438198..439466) Escherichia coli JJ1886 17429228 YP_008720468.1 CDS P423_02020 NC_022648.1 439508 442651 R with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease subunit SbcC complement(439508..442651) Escherichia coli JJ1886 17429229 YP_008720469.1 CDS P423_02025 NC_022648.1 442648 443850 R with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease subunit SbcD complement(442648..443850) Escherichia coli JJ1886 17429230 YP_008720470.1 CDS P423_02030 NC_022648.1 444040 444729 D two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoB family transcriptional regulator 444040..444729 Escherichia coli JJ1886 17429231 YP_008720471.1 CDS phoR NC_022648.1 444787 446082 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate regulon sensor protein 444787..446082 Escherichia coli JJ1886 17429232 YP_008720472.1 CDS P423_02040 NC_022648.1 446489 447808 D sodium:branched-chain amino acid symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid transporter 2 carrier protein BrnQ 446489..447808 Escherichia coli JJ1886 17429233 YP_008720473.1 CDS proY NC_022648.1 447884 449257 D cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 447884..449257 Escherichia coli JJ1886 17429234 YP_008720474.1 CDS P423_02050 NC_022648.1 449416 451230 D Derived by automated computational analysis using gene prediction method: Protein Homology.; maltodextrin glucosidase 449416..451230 Escherichia coli JJ1886 17429235 YP_008720475.1 CDS P423_02055 NC_022648.1 451235 451816 R Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; ACP phosphodiesterase complement(451235..451816) Escherichia coli JJ1886 17429236 YP_008720476.1 CDS queA NC_022648.1 451909 452979 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine tRNA ribosyltransferase 451909..452979 Escherichia coli JJ1886 17429237 YP_008720477.1 CDS tgt NC_022648.1 453034 454161 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); Derived by automated computational analysis using gene prediction method: Protein Homology.; queuine tRNA-ribosyltransferase 453034..454161 Escherichia coli JJ1886 17429238 YP_008720478.1 CDS yajC NC_022648.1 454184 454516 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit YajC 454184..454516 Escherichia coli JJ1886 17429239 YP_008720479.1 CDS secD NC_022648.1 454544 456391 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecD 454544..456391 Escherichia coli JJ1886 17429240 YP_008720480.1 CDS P423_02080 NC_022648.1 456402 457373 D Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecF 456402..457373 Escherichia coli JJ1886 17429241 YP_008720481.1 CDS P423_02085 NC_022648.1 457503 457850 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 457503..457850 Escherichia coli JJ1886 17429242 YP_008720482.1 CDS P423_02090 NC_022648.1 457888 458772 R receptor of phage T6 and colicin K; involved in the transfer of deoxyribo- and ribo-nucleotides across the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; ion channel protein Tsx complement(457888..458772) Escherichia coli JJ1886 17429243 YP_008720483.1 CDS P423_02095 NC_022648.1 459071 459610 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(459071..459610) Escherichia coli JJ1886 17429244 YP_008720484.1 CDS P423_02100 NC_022648.1 459761 460210 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NrdR family transcriptional regulator 459761..460210 Escherichia coli JJ1886 17429245 YP_008720485.1 CDS ribD NC_022648.1 460214 461317 D riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminohydroxyphosphoribosylaminopyrimidine deaminase 460214..461317 Escherichia coli JJ1886 17429246 YP_008720486.1 CDS ribH NC_022648.1 461406 461876 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6,7-dimethyl-8-ribityllumazine synthase 461406..461876 Escherichia coli JJ1886 17429247 YP_008720487.1 CDS nusB NC_022648.1 461896 462315 D Regulates rRNA biosynthesis by transcriptional antitermination; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antitermination protein NusB 461896..462315 Escherichia coli JJ1886 17429248 YP_008720488.1 CDS P423_02120 NC_022648.1 462393 463370 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine monophosphate kinase 462393..463370 Escherichia coli JJ1886 17429249 YP_008720489.1 CDS P423_02125 NC_022648.1 463348 463866 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphatase A 463348..463866 Escherichia coli JJ1886 17429250 YP_008720490.1 CDS P423_02130 NC_022648.1 463920 464894 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(463920..464894) Escherichia coli JJ1886 17429251 YP_008720491.1 CDS P423_02135 NC_022648.1 464949 466811 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-deoxy-D-xylulose-5-phosphate synthase complement(464949..466811) Escherichia coli JJ1886 17429252 YP_008720492.1 CDS P423_02140 NC_022648.1 466836 467735 R Derived by automated computational analysis using gene prediction method: Protein Homology.; geranyltranstransferase complement(466836..467735) Escherichia coli JJ1886 17429253 YP_008720493.1 CDS P423_02145 NC_022648.1 467735 467977 R catalyzes the bidirectional exonucleolytic cleavage of DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII small subunit complement(467735..467977) Escherichia coli JJ1886 17429254 YP_008720494.1 CDS P423_02150 NC_022648.1 468183 469631 D catalyzes the conversion of uridine to 4-thiouridinine tRNA; also required for the synthesis of the thiazole moiety; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA s(4)U8 sulfurtransferase 468183..469631 Escherichia coli JJ1886 17429255 YP_008720495.1 CDS P423_02155 NC_022648.1 469685 470275 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative-stress-resistance chaperone complement(469685..470275) Escherichia coli JJ1886 17429256 YP_008720496.1 CDS P423_02160 NC_022648.1 470238 471149 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydropantoate 2-reductase complement(470238..471149) Escherichia coli JJ1886 17429257 YP_008720497.1 CDS P423_02165 NC_022648.1 471317 471808 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotide-binding protein 471317..471808 Escherichia coli JJ1886 17429258 YP_008720498.1 CDS P423_02170 NC_022648.1 471936 473300 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(471936..473300) Escherichia coli JJ1886 17429259 YP_008720499.1 CDS P423_02175 NC_022648.1 473449 474339 R converts protoheme IX and farnesyl diphosphate to heme O; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoheme IX farnesyltransferase complement(473449..474339) Escherichia coli JJ1886 17429260 YP_008720500.1 CDS P423_02180 NC_022648.1 474351 474680 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(474351..474680) Escherichia coli JJ1886 17429261 YP_008720501.1 CDS P423_02185 NC_022648.1 474680 475294 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(474680..475294) Escherichia coli JJ1886 17429262 YP_008720502.1 CDS P423_02190 NC_022648.1 475284 477275 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(475284..477275) Escherichia coli JJ1886 17429263 YP_008720503.1 CDS P423_02195 NC_022648.1 477297 478244 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(477297..478244) Escherichia coli JJ1886 17429264 YP_008720504.1 CDS ampG NC_022648.1 478704 480179 R in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; muropeptide transporter complement(478704..480179) Escherichia coli JJ1886 17429265 YP_008720505.1 CDS P423_02205 NC_022648.1 480223 480801 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(480223..480801) Escherichia coli JJ1886 17429266 YP_008720506.1 CDS P423_02210 NC_022648.1 481106 481423 D positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; BolA family transcriptional regulator 481106..481423 Escherichia coli JJ1886 17429267 YP_008720507.1 CDS P423_02215 NC_022648.1 481432 481620 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 481432..481620 Escherichia coli JJ1886 17429268 YP_008720508.1 CDS P423_02220 NC_022648.1 481767 483065 D Derived by automated computational analysis using gene prediction method: Protein Homology.; trigger factor 481767..483065 Escherichia coli JJ1886 17429269 YP_008720509.1 CDS P423_02225 NC_022648.1 483311 483934 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Clp protease proteolytic subunit ClpP 483311..483934 Escherichia coli JJ1886 17429270 YP_008720510.1 CDS clpX NC_022648.1 484060 485334 D binds and unfolds substrates as part of the ClpXP protease; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease 484060..485334 Escherichia coli JJ1886 17429271 YP_008720511.1 CDS P423_02235 NC_022648.1 485522 487876 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 485522..487876 Escherichia coli JJ1886 17429272 YP_008720512.1 CDS P423_02240 NC_022648.1 488085 488357 D histone-like DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 488085..488357 Escherichia coli JJ1886 17429273 YP_008720513.1 CDS P423_02245 NC_022648.1 488549 490420 D Derived by automated computational analysis using gene prediction method: Protein Homology.; folding chaperone 488549..490420 Escherichia coli JJ1886 17429274 YP_008720514.1 CDS P423_02250 NC_022648.1 490571 490942 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 490571..490942 Escherichia coli JJ1886 17429275 YP_008720515.1 CDS P423_02255 NC_022648.1 491060 491458 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thioesterase 491060..491458 Escherichia coli JJ1886 17429276 YP_008720516.1 CDS P423_02260 NC_022648.1 491510 492205 R YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; Derived by automated computational analysis using gene prediction method: Protein Homology.; queuosine biosynthesis protein QueC complement(491510..492205) Escherichia coli JJ1886 17429277 YP_008720517.1 CDS P423_02265 NC_022648.1 492270 493970 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(492270..493970) Escherichia coli JJ1886 17429278 YP_008720518.1 CDS P423_02270 NC_022648.1 494070 494888 D HMP-PP phosphatase; catalyzes the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate (HMP-PP) to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate (HMP-P); Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamin pyrimidine pyrophosphate hydrolase 494070..494888 Escherichia coli JJ1886 17429279 YP_008720519.1 CDS P423_02275 NC_022648.1 495041 495499 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 495041..495499 Escherichia coli JJ1886 17429280 YP_008720520.1 CDS P423_02280 NC_022648.1 495529 497301 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 495529..497301 Escherichia coli JJ1886 17429281 YP_008720521.1 CDS P423_02285 NC_022648.1 497294 499075 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 497294..499075 Escherichia coli JJ1886 17429282 YP_008720522.1 CDS P423_02290 NC_022648.1 499089 499229 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(499089..499229) Escherichia coli JJ1886 17429283 YP_008720523.1 CDS P423_02295 NC_022648.1 499256 499594 D indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulatory protein P-II 2 499256..499594 Escherichia coli JJ1886 17429284 YP_008720524.1 CDS P423_02300 NC_022648.1 499624 500910 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ammonium transporter 499624..500910 Escherichia coli JJ1886 17429285 YP_008720525.1 CDS P423_02305 NC_022648.1 500959 501819 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase complement(500959..501819) Escherichia coli JJ1886 17429286 YP_008720526.1 CDS P423_02310 NC_022648.1 502037 502609 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 502037..502609 Escherichia coli JJ1886 17429287 YP_008720527.1 CDS P423_02315 NC_022648.1 502640 502951 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(502640..502951) Escherichia coli JJ1886 17429288 YP_008720528.1 CDS P423_02320 NC_022648.1 503330 503683 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 503330..503683 Escherichia coli JJ1886 17429289 YP_008720529.1 CDS P423_02325 NC_022648.1 503725 505281 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(503725..505281) Escherichia coli JJ1886 17429290 YP_008720530.1 CDS P423_02330 NC_022648.1 505439 505909 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(505439..505909) Escherichia coli JJ1886 17429291 YP_008720531.1 CDS P423_02335 NC_022648.1 506025 506576 R Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose O-acetyltransferase complement(506025..506576) Escherichia coli JJ1886 17429292 YP_008720532.1 CDS P423_02340 NC_022648.1 506750 506968 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; gene expression modulator complement(506750..506968) Escherichia coli JJ1886 17429293 YP_008720533.1 CDS P423_02345 NC_022648.1 506994 507368 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Hha toxicity attenuator complement(506994..507368) Escherichia coli JJ1886 17429294 YP_008720534.1 CDS P423_02350 NC_022648.1 507914 511063 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(507914..511063) Escherichia coli JJ1886 17429295 YP_008720535.1 CDS P423_02355 NC_022648.1 511086 512279 R with AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(511086..512279) Escherichia coli JJ1886 17429296 YP_008720536.1 CDS P423_02360 NC_022648.1 512421 513068 D regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 512421..513068 Escherichia coli JJ1886 17429297 YP_008720537.1 CDS P423_02365 NC_022648.1 513196 516558 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 513196..516558 Escherichia coli JJ1886 17429298 YP_008720538.1 CDS P423_02370 NC_022648.1 516597 516761 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(516597..516761) Escherichia coli JJ1886 17429299 YP_008720539.1 CDS P423_02375 NC_022648.1 516775 517302 R PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosomal replication protein N'' complement(516775..517302) Escherichia coli JJ1886 17429300 YP_008720540.1 CDS P423_02380 NC_022648.1 517372 517749 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 517372..517749 Escherichia coli JJ1886 17429301 YP_008720541.1 CDS P423_02385 NC_022648.1 517902 518453 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine phosphoribosyltransferase 517902..518453 Escherichia coli JJ1886 17429302 YP_008720542.1 CDS P423_02390 NC_022648.1 518582 520513 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunits gamma and tau 518582..520513 Escherichia coli JJ1886 17429303 YP_008720543.1 CDS P423_02395 NC_022648.1 520566 520895 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 520566..520895 Escherichia coli JJ1886 17429304 YP_008720544.1 CDS recR NC_022648.1 520895 521500 D involved in a recombinational process of DNA repair, independent of the recBC complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RecR 520895..521500 Escherichia coli JJ1886 17429305 YP_008720545.1 CDS P423_02405 NC_022648.1 521610 523484 D molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein 90 521610..523484 Escherichia coli JJ1886 17429306 YP_008720546.1 CDS adk NC_022648.1 523665 524309 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylate kinase 523665..524309 Escherichia coli JJ1886 17429307 YP_008720547.1 CDS P423_02415 NC_022648.1 524441 525403 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ferrochelatase 524441..525403 Escherichia coli JJ1886 17429308 YP_008720548.1 CDS P423_02420 NC_022648.1 525400 526359 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl esterase complement(525400..526359) Escherichia coli JJ1886 17429309 YP_008720549.1 CDS P423_02425 NC_022648.1 526511 527815 D catalyzes the formation of inosine/guanosine monophosphate from inosine or guanosine and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine/guanosine kinase 526511..527815 Escherichia coli JJ1886 17429310 YP_008720550.1 CDS P423_02430 NC_022648.1 527945 529621 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cation:proton antiport protein complement(527945..529621) Escherichia coli JJ1886 17429311 YP_008720551.1 CDS P423_02435 NC_022648.1 529860 531080 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Fosmidomycin resistance protein complement(529860..531080) Escherichia coli JJ1886 17429312 YP_008720552.1 CDS ushA NC_022648.1 531298 532950 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase 531298..532950 Escherichia coli JJ1886 17429313 YP_008720553.1 CDS P423_02445 NC_022648.1 532988 533491 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(532988..533491) Escherichia coli JJ1886 17429314 YP_008720554.1 CDS P423_02450 NC_022648.1 533488 534288 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(533488..534288) Escherichia coli JJ1886 17429315 YP_008720555.1 CDS P423_02455 NC_022648.1 534312 534791 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(534312..534791) Escherichia coli JJ1886 17429316 YP_008720556.1 CDS P423_02460 NC_022648.1 534995 535789 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(534995..535789) Escherichia coli JJ1886 17429317 YP_008720557.1 CDS P423_02465 NC_022648.1 535922 536224 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 535922..536224 Escherichia coli JJ1886 17429318 YP_008720558.1 CDS P423_02470 NC_022648.1 536260 536601 D Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 536260..536601 Escherichia coli JJ1886 17429319 YP_008720559.1 CDS copA NC_022648.1 536659 539163 R Derived by automated computational analysis using gene prediction method: Protein Homology.; copper exporting ATPase complement(536659..539163) Escherichia coli JJ1886 17429320 YP_008720560.1 CDS P423_02480 NC_022648.1 539425 540357 D catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminase 539425..540357 Escherichia coli JJ1886 17429321 YP_008720561.1 CDS P423_02485 NC_022648.1 540360 541652 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid permease 540360..541652 Escherichia coli JJ1886 17429322 YP_008720562.1 CDS P423_02490 NC_022648.1 541777 542184 D activator of copper-responsive regulon genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 541777..542184 Escherichia coli JJ1886 17429323 YP_008720563.1 CDS P423_02495 NC_022648.1 542185 542664 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(542185..542664) Escherichia coli JJ1886 17429324 YP_008720564.1 CDS P423_02500 NC_022648.1 543014 543472 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(543014..543472) Escherichia coli JJ1886 17429325 YP_008720565.1 CDS P423_02505 NC_022648.1 543469 544386 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protease complement(543469..544386) Escherichia coli JJ1886 17429326 YP_008720566.1 CDS P423_02510 NC_022648.1 544532 545209 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; putrescine/spermidine ABC transporter ATP-binding protein 544532..545209 Escherichia coli JJ1886 17429327 YP_008720567.1 CDS P423_02515 NC_022648.1 545196 545975 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 545196..545975 Escherichia coli JJ1886 17429328 YP_008720568.1 CDS P423_02520 NC_022648.1 546158 547012 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(546158..547012) Escherichia coli JJ1886 17429329 YP_008720569.1 CDS P423_02525 NC_022648.1 547073 547882 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(547073..547882) Escherichia coli JJ1886 17429330 YP_008720570.1 CDS P423_02530 NC_022648.1 547872 548498 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 complement(547872..548498) Escherichia coli JJ1886 17429331 YP_008720571.1 CDS P423_02535 NC_022648.1 548466 549152 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphonate ABC transporter ATP-binding protein 548466..549152 Escherichia coli JJ1886 17429332 YP_008720572.1 CDS P423_02540 NC_022648.1 549149 551563 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease 549149..551563 Escherichia coli JJ1886 17429333 YP_008720573.1 CDS P423_02545 NC_022648.1 551732 553735 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 551732..553735 Escherichia coli JJ1886 17429334 YP_008720574.1 CDS P423_02550 NC_022648.1 553725 554384 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 553725..554384 Escherichia coli JJ1886 17429335 YP_008720575.1 CDS P423_02555 NC_022648.1 554391 555059 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 554391..555059 Escherichia coli JJ1886 17429336 YP_008720576.1 CDS P423_02560 NC_022648.1 555336 555734 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 555336..555734 Escherichia coli JJ1886 17429337 YP_008720577.1 CDS P423_02565 NC_022648.1 555786 556892 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA 2-selenouridine synthase complement(555786..556892) Escherichia coli JJ1886 17429338 YP_008720578.1 CDS P423_02570 NC_022648.1 556961 557887 R activator of the allDC-ylbA operon involved in allantoin utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(556961..557887) Escherichia coli JJ1886 17429339 YP_008720579.1 CDS P423_02575 NC_022648.1 558117 558599 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ureidoglycolate hydrolase 558117..558599 Escherichia coli JJ1886 17429340 YP_008720580.1 CDS P423_02580 NC_022648.1 558677 559492 D regulates operons involved in the utilization of allantoin; Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator 558677..559492 Escherichia coli JJ1886 17429341 YP_008720581.1 CDS P423_02585 NC_022648.1 559582 561363 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glyoxylate carboligase 559582..561363 Escherichia coli JJ1886 17429342 YP_008720582.1 CDS P423_02590 NC_022648.1 561376 562152 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxypyruvate isomerase 561376..562152 Escherichia coli JJ1886 17429343 YP_008720583.1 CDS P423_02595 NC_022648.1 562252 563130 D NADH-dependent; catalyzed the reversible formation of glycerate from tartronate semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; tartronate semialdehyde reductase 562252..563130 Escherichia coli JJ1886 17429344 YP_008720584.1 CDS P423_02600 NC_022648.1 563300 564754 D Derived by automated computational analysis using gene prediction method: Protein Homology.; allantoin permease 563300..564754 Escherichia coli JJ1886 17429345 YP_008720585.1 CDS P423_02605 NC_022648.1 564814 566175 D Plays a crucial role on both purine and pyrimidine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; allantoinase 564814..566175 Escherichia coli JJ1886 17429346 YP_008720586.1 CDS P423_02610 NC_022648.1 566231 567532 D Derived by automated computational analysis using gene prediction method: Protein Homology.; purine permease 566231..567532 Escherichia coli JJ1886 17429347 YP_008720587.1 CDS P423_02615 NC_022648.1 567554 568699 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase 567554..568699 Escherichia coli JJ1886 17429348 YP_008720588.1 CDS P423_02620 NC_022648.1 568828 569613 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(568828..569613) Escherichia coli JJ1886 17429349 YP_008720589.1 CDS P423_02625 NC_022648.1 569624 570859 R Derived by automated computational analysis using gene prediction method: Protein Homology.; allantoate amidohydrolase complement(569624..570859) Escherichia coli JJ1886 17429350 YP_008720590.1 CDS P423_02630 NC_022648.1 570881 571930 R catalyzes the formation of oxalurate from ureidoglycolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ureidoglycolate dehydrogenase complement(570881..571930) Escherichia coli JJ1886 17429351 YP_008720591.1 CDS P423_02635 NC_022648.1 572247 573914 D multicopy suppressor of dominant negative ftsH mutations; putative acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 572247..573914 Escherichia coli JJ1886 17429352 YP_008720592.1 CDS P423_02640 NC_022648.1 573924 575183 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 573924..575183 Escherichia coli JJ1886 17429353 YP_008720593.1 CDS P423_02645 NC_022648.1 575194 576009 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 575194..576009 Escherichia coli JJ1886 17429354 YP_008720594.1 CDS P423_02655 NC_022648.1 577432 578499 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole carboxylase complement(577432..578499) Escherichia coli JJ1886 17429356 YP_008720595.1 CDS purE NC_022648.1 578496 579005 R catalyzes the formation of 4-carboxy-5-aminoimidazole ribonucleotide from N5-carboxyaminoimidazole ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-carboxyaminoimidazole ribonucleotide mutase complement(578496..579005) Escherichia coli JJ1886 17429357 YP_008720596.1 CDS P423_02665 NC_022648.1 579101 579430 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(579101..579430) Escherichia coli JJ1886 17429358 YP_008720597.1 CDS P423_02670 NC_022648.1 579541 580263 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-2,3-diacylglucosamine hydrolase complement(579541..580263) Escherichia coli JJ1886 17429359 YP_008720598.1 CDS P423_02675 NC_022648.1 580266 580760 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(580266..580760) Escherichia coli JJ1886 17429360 YP_008720599.1 CDS cysS NC_022648.1 580934 582319 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteinyl-tRNA synthetase 580934..582319 Escherichia coli JJ1886 17429361 YP_008720600.1 CDS P423_02685 NC_022648.1 582355 582876 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(582355..582876) Escherichia coli JJ1886 17429362 YP_008720601.1 CDS P423_02690 NC_022648.1 582984 583196 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated protein complement(582984..583196) Escherichia coli JJ1886 17429363 YP_008720602.1 CDS P423_02695 NC_022648.1 583198 584064 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methenyltetrahydrofolate cyclohydrolase complement(583198..584064) Escherichia coli JJ1886 17429364 YP_008720603.1 CDS P423_02700 NC_022648.1 584114 584236 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 584114..584236 Escherichia coli JJ1886 17429365 YP_008720604.1 CDS P423_02710 NC_022648.1 585104 585409 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail fiber assembly protein 585104..585409 Escherichia coli JJ1886 17433819 YP_008720605.1 CDS P423_02715 NC_022648.1 585464 586120 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(585464..586120) Escherichia coli JJ1886 17429368 YP_008720606.1 CDS P423_02720 NC_022648.1 586364 587317 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protease complement(586364..587317) Escherichia coli JJ1886 17429369 YP_008720607.1 CDS P423_02725 NC_022648.1 587965 588855 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(587965..588855) Escherichia coli JJ1886 17429370 YP_008720608.1 CDS P423_02730 NC_022648.1 588856 591828 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(588856..591828) Escherichia coli JJ1886 17429371 YP_008720609.1 CDS nfrB NC_022648.1 591815 594052 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase family 2 complement(591815..594052) Escherichia coli JJ1886 17429372 YP_008720610.1 CDS P423_02740 NC_022648.1 594202 595644 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor kinase CusS complement(594202..595644) Escherichia coli JJ1886 17429373 YP_008720611.1 CDS P423_02745 NC_022648.1 595634 596317 R response regulator in two-component regulatory system with CusS; regulates the copper efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(595634..596317) Escherichia coli JJ1886 17429374 YP_008720612.1 CDS P423_02750 NC_022648.1 596474 597856 D with CusA, CusB and CusF is part of a cation efflux system that mediates resistance to copper and silver; Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter 596474..597856 Escherichia coli JJ1886 17429375 YP_008720613.1 CDS P423_02755 NC_022648.1 597880 598212 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter 597880..598212 Escherichia coli JJ1886 17429376 YP_008720614.1 CDS P423_02760 NC_022648.1 598228 599451 D with CusA, CusC and CusF is part of a cation efflux system that mediates resistance to copper and silver; Derived by automated computational analysis using gene prediction method: Protein Homology.; metal RND transporter 598228..599451 Escherichia coli JJ1886 17429377 YP_008720615.1 CDS P423_02765 NC_022648.1 599463 602606 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter 599463..602606 Escherichia coli JJ1886 17429378 YP_008720616.1 CDS P423_02770 NC_022648.1 602708 604090 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid transporter 602708..604090 Escherichia coli JJ1886 17429379 YP_008720617.1 CDS P423_02775 NC_022648.1 604248 605495 R Derived by automated computational analysis using gene prediction method: Protein Homology.; miniconductance mechanosensitive channel complement(604248..605495) Escherichia coli JJ1886 17429380 YP_008720618.1 CDS P423_02780 NC_022648.1 605603 606256 R catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropteridine reductase complement(605603..606256) Escherichia coli JJ1886 17429381 YP_008720619.1 CDS P423_02785 NC_022648.1 606335 606718 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(606335..606718) Escherichia coli JJ1886 17429382 YP_008720620.1 CDS P423_02790 NC_022648.1 606783 607031 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(606783..607031) Escherichia coli JJ1886 17429383 YP_008720621.1 CDS P423_02795 NC_022648.1 607097 608215 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl:cysteine ligase complement(607097..608215) Escherichia coli JJ1886 17429384 YP_008720622.1 CDS P423_02800 NC_022648.1 608658 608810 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 608658..608810 Escherichia coli JJ1886 17429385 YP_008720623.1 CDS P423_02805 NC_022648.1 609422 610207 R Derived by automated computational analysis using gene prediction method: Protein Homology.; short-chain dehydrogenase complement(609422..610207) Escherichia coli JJ1886 17433820 YP_008720624.1 CDS P423_02810 NC_022648.1 610240 611037 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MFS transporter complement(610240..611037) Escherichia coli JJ1886 17429387 YP_008720625.1 CDS rbsC NC_022648.1 611091 612158 R functions to transport ribose at high affinity; forms a complex with RbsA2C2B; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose ABC transporter permease complement(611091..612158) Escherichia coli JJ1886 17429388 YP_008720626.1 CDS P423_02820 NC_022648.1 612176 613720 R with XylFH is part of the high affinity xylose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose ABC transporter ATP-binding protein complement(612176..613720) Escherichia coli JJ1886 17429389 YP_008720627.1 CDS P423_02825 NC_022648.1 613722 614342 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(613722..614342) Escherichia coli JJ1886 17429390 YP_008720628.1 CDS P423_02830 NC_022648.1 614389 615324 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter substrate-binding protein complement(614389..615324) Escherichia coli JJ1886 17429391 YP_008720629.1 CDS glpK NC_022648.1 615428 616948 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol kinase complement(615428..616948) Escherichia coli JJ1886 17429392 YP_008720630.1 CDS P423_02840 NC_022648.1 617299 618249 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DeoR family transcriptional regulator complement(617299..618249) Escherichia coli JJ1886 17429393 YP_008720631.1 CDS P423_02845 NC_022648.1 618612 619442 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transketolase 618612..619442 Escherichia coli JJ1886 17429394 YP_008720632.1 CDS P423_02850 NC_022648.1 619435 620370 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transketolase 619435..620370 Escherichia coli JJ1886 17429395 YP_008720633.1 CDS P423_02855 NC_022648.1 620372 621040 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 4'-phosphopantetheinyl transferase complement(620372..621040) Escherichia coli JJ1886 17429396 YP_008720634.1 CDS P423_02860 NC_022648.1 621206 623446 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane receptor FepA complement(621206..623446) Escherichia coli JJ1886 17429397 YP_008720635.1 CDS P423_02865 NC_022648.1 623689 624891 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; enterobactin/ferric enterobactin esterase 623689..624891 Escherichia coli JJ1886 17429398 YP_008720636.1 CDS P423_02870 NC_022648.1 624894 625112 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 624894..625112 Escherichia coli JJ1886 17429399 YP_008720637.1 CDS entF NC_022648.1 625109 628990 D with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin synthase subunit F 625109..628990 Escherichia coli JJ1886 17429400 YP_008720638.1 CDS P423_02880 NC_022648.1 629237 630370 D in Salmonella is responsible for long O-antigen polymerization; may be part of the ferric enterobactin transport system; necessary for enetrobactin uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 629237..630370 Escherichia coli JJ1886 17429401 YP_008720639.1 CDS P423_02885 NC_022648.1 630367 631182 R with FepBDE is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter ATP-binding protein complement(630367..631182) Escherichia coli JJ1886 17429402 YP_008720640.1 CDS P423_02890 NC_022648.1 631179 632171 R with FepBCD is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter permease complement(631179..632171) Escherichia coli JJ1886 17429403 YP_008720641.1 CDS P423_02895 NC_022648.1 632168 633172 R with FepBCG is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter membrane protein complement(632168..633172) Escherichia coli JJ1886 17429404 YP_008720642.1 CDS P423_02900 NC_022648.1 633283 634533 D protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin exporter EntS 633283..634533 Escherichia coli JJ1886 17429405 YP_008720643.1 CDS P423_02905 NC_022648.1 634537 635493 R with FepCDG is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; antibiotic ABC transporter substrate-binding protein complement(634537..635493) Escherichia coli JJ1886 17429406 YP_008720644.1 CDS P423_02910 NC_022648.1 635682 636857 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isochorismate synthase EntC 635682..636857 Escherichia coli JJ1886 17429407 YP_008720645.1 CDS entE NC_022648.1 636867 638477 D bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin synthase subunit E 636867..638477 Escherichia coli JJ1886 17429408 YP_008720646.1 CDS P423_02920 NC_022648.1 638491 639348 D 2,3 dihydro-2,3 dihydroxybenzoate synthase; catalyzes the formation of 2,3 dihydro-2,3 dihydroxybenzoate and pyruvate from isochorismate; with Ent DEF is involved in enterobactin synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; isochorismatase 638491..639348 Escherichia coli JJ1886 17429409 YP_008720647.1 CDS P423_02925 NC_022648.1 639348 640094 D catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3-dihydroxybenzoate-2,3-dehydrogenase 639348..640094 Escherichia coli JJ1886 17429410 YP_008720648.1 CDS P423_02930 NC_022648.1 640097 640510 D required for efficient enterobactin production; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase 640097..640510 Escherichia coli JJ1886 17429411 YP_008720649.1 CDS P423_02935 NC_022648.1 640691 642796 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation protein A 640691..642796 Escherichia coli JJ1886 17429412 YP_008720650.1 CDS P423_02940 NC_022648.1 642909 643106 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 642909..643106 Escherichia coli JJ1886 17429413 YP_008720651.1 CDS P423_02945 NC_022648.1 643116 644204 R member of the iron-containing alcohol dehydrogenase family; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(643116..644204) Escherichia coli JJ1886 17429414 YP_008720652.1 CDS P423_02950 NC_022648.1 644313 645473 D catalyzes the transfer of an amino moiety; preference for methionine followed by histidine and phenylalanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase 644313..645473 Escherichia coli JJ1886 17429415 YP_008720653.1 CDS P423_02955 NC_022648.1 645474 646091 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(645474..646091) Escherichia coli JJ1886 17429416 YP_008720654.1 CDS P423_02960 NC_022648.1 646076 647296 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(646076..647296) Escherichia coli JJ1886 17429417 YP_008720655.1 CDS P423_02965 NC_022648.1 647443 648345 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(647443..648345) Escherichia coli JJ1886 17429418 YP_008720656.1 CDS dsbG NC_022648.1 648550 649296 R Involved in disulfide bond formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; disulfide isomerase complement(648550..649296) Escherichia coli JJ1886 17429419 YP_008720657.1 CDS P423_02975 NC_022648.1 649668 650231 D with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; alkyl hydroperoxide reductase subunit C 649668..650231 Escherichia coli JJ1886 17429420 YP_008720658.1 CDS P423_02980 NC_022648.1 650287 650403 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(650287..650403) Escherichia coli JJ1886 17429421 YP_008720659.1 CDS P423_02985 NC_022648.1 650402 651967 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alkyl hydroperoxide reductase subunit F 650402..651967 Escherichia coli JJ1886 17429422 YP_008720660.1 CDS P423_02990 NC_022648.1 652088 652516 R interacts with GroEL; is induced by starvation, heat shock and toxic agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein G complement(652088..652516) Escherichia coli JJ1886 17429423 YP_008720661.1 CDS P423_02995 NC_022648.1 652872 653282 R Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside diphosphate kinase regulator complement(652872..653282) Escherichia coli JJ1886 17429424 YP_008720662.1 CDS P423_03000 NC_022648.1 653512 654318 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease I complement(653512..654318) Escherichia coli JJ1886 17429425 YP_008720663.1 CDS P423_03005 NC_022648.1 654432 655895 R involved in the transport of citrate into the cell along with the export of succinate out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter complement(654432..655895) Escherichia coli JJ1886 17429426 YP_008720664.1 CDS citG NC_022648.1 655946 656824 R catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; triphosphoribosyl-dephospho-CoA synthase complement(655946..656824) Escherichia coli JJ1886 17429427 YP_008720665.1 CDS citX NC_022648.1 656799 657350 R 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase complement(656799..657350) Escherichia coli JJ1886 17429428 YP_008720666.1 CDS P423_03020 NC_022648.1 657354 658886 R citrate-ACP transferase, the alpha subunit catalyzes the formation of (3S)-citryl-CoA from acetyl-CoA and citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit alpha complement(657354..658886) Escherichia coli JJ1886 17429429 YP_008720667.1 CDS P423_03025 NC_022648.1 658897 659805 R citryl-ACP lyase; catalyzes the formation of acetate and oxaloacetate from citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit beta complement(658897..659805) Escherichia coli JJ1886 17429430 YP_008720668.1 CDS P423_03030 NC_022648.1 659802 660098 R Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit gamma complement(659802..660098) Escherichia coli JJ1886 17429431 YP_008720669.1 CDS P423_03035 NC_022648.1 660113 661171 R activates citrate lyase by acetylation of the gamma subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; [citrate [pro-3S]-lyase] ligase complement(660113..661171) Escherichia coli JJ1886 17429432 YP_008720670.1 CDS dpiB NC_022648.1 661551 663209 D regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase DpiB 661551..663209 Escherichia coli JJ1886 17429433 YP_008720671.1 CDS dpiA NC_022648.1 663178 663858 D regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; two-protein response regulator DpiA 663178..663858 Escherichia coli JJ1886 17429434 YP_008720672.1 CDS dcuC NC_022648.1 663899 665284 R responsible for the transport of C4-dicarboxylates during anaerobic growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(663899..665284) Escherichia coli JJ1886 17429435 YP_008720673.1 CDS pagP NC_022648.1 665871 666431 D catalyzes the transfer of palmitate to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipid:lipid A palmitoyltransferase 665871..666431 Escherichia coli JJ1886 17429436 YP_008720674.1 CDS P423_03060 NC_022648.1 666606 666815 D Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator 666606..666815 Escherichia coli JJ1886 17429437 YP_008720675.1 CDS P423_03065 NC_022648.1 666869 667252 R camphor resistance protein CrcB; may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.; camphor resistance protein CrcB complement(666869..667252) Escherichia coli JJ1886 17429438 YP_008720676.1 CDS P423_03070 NC_022648.1 667345 668133 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 667345..668133 Escherichia coli JJ1886 17429439 YP_008720677.1 CDS tatE NC_022648.1 668262 668465 D TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit TatE 668262..668465 Escherichia coli JJ1886 17429440 YP_008720678.1 CDS P423_03080 NC_022648.1 668565 669530 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoyl synthase complement(668565..669530) Escherichia coli JJ1886 17429441 YP_008720679.1 CDS P423_03090 NC_022648.1 670555 671196 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoate-protein ligase B complement(670555..671196) Escherichia coli JJ1886 17429443 YP_008720680.1 CDS P423_03095 NC_022648.1 671297 671560 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(671297..671560) Escherichia coli JJ1886 17429444 YP_008720681.1 CDS P423_03100 NC_022648.1 671670 672881 R penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase complement(671670..672881) Escherichia coli JJ1886 17429445 YP_008720682.1 CDS P423_03105 NC_022648.1 673021 674109 R septal ring protein, suppressor of prc, minor lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.; rare lipoprotein A complement(673021..674109) Escherichia coli JJ1886 17429446 YP_008720683.1 CDS P423_03110 NC_022648.1 674120 675232 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell wall shape-determining protein complement(674120..675232) Escherichia coli JJ1886 17429447 YP_008720684.1 CDS P423_03115 NC_022648.1 675235 677136 R Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 2 complement(675235..677136) Escherichia coli JJ1886 17429448 YP_008720685.1 CDS P423_03120 NC_022648.1 677167 677634 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S rRNA methyltransferase complement(677167..677634) Escherichia coli JJ1886 17429449 YP_008720686.1 CDS P423_03125 NC_022648.1 677638 677955 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated protein complement(677638..677955) Escherichia coli JJ1886 17429450 YP_008720687.1 CDS P423_03130 NC_022648.1 678215 678826 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ribazole phosphatase complement(678215..678826) Escherichia coli JJ1886 17429451 YP_008720688.1 CDS P423_03135 NC_022648.1 678850 679491 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinic acid mononucleotide adenylyltransferase complement(678850..679491) Escherichia coli JJ1886 17429452 YP_008720689.1 CDS holA NC_022648.1 679493 680524 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit delta complement(679493..680524) Escherichia coli JJ1886 17429453 YP_008720690.1 CDS P423_03145 NC_022648.1 680524 681105 R rare lipoprotein B; involved in the assembly of LPS in the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS-assembly lipoprotein RlpB complement(680524..681105) Escherichia coli JJ1886 17429454 YP_008720691.1 CDS leuS NC_022648.1 681120 683702 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucyl-tRNA synthetase complement(681120..683702) Escherichia coli JJ1886 17429455 YP_008720692.1 CDS P423_03155 NC_022648.1 683937 684419 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 683937..684419 Escherichia coli JJ1886 17429456 YP_008720693.1 CDS P423_03160 NC_022648.1 684669 684887 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(684669..684887) Escherichia coli JJ1886 17429457 YP_008720694.1 CDS P423_03165 NC_022648.1 684964 685518 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(684964..685518) Escherichia coli JJ1886 17429458 YP_008720695.1 CDS P423_03170 NC_022648.1 685620 686327 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 685620..686327 Escherichia coli JJ1886 17429459 YP_008720696.1 CDS P423_03175 NC_022648.1 687835 689505 R Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone HscC complement(687835..689505) Escherichia coli JJ1886 17429460 YP_008720697.1 CDS rihA NC_022648.1 689589 690524 R Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside hydrolase complement(689589..690524) Escherichia coli JJ1886 17429461 YP_008720698.1 CDS P423_03185 NC_022648.1 690642 691367 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein complement(690642..691367) Escherichia coli JJ1886 17429462 YP_008720699.1 CDS P423_03190 NC_022648.1 691367 692041 R with GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate/aspartate transporter permease GltK complement(691367..692041) Escherichia coli JJ1886 17429463 YP_008720700.1 CDS P423_03195 NC_022648.1 692041 692781 R with GltIKL is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate/aspartate ABC transporter permease GltJ complement(692041..692781) Escherichia coli JJ1886 17429464 YP_008720701.1 CDS P423_03200 NC_022648.1 692951 693859 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid transporter complement(692951..693859) Escherichia coli JJ1886 17429465 YP_008720702.1 CDS P423_03205 NC_022648.1 694313 696190 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 694313..696190 Escherichia coli JJ1886 17429466 YP_008720703.1 CDS P423_03210 NC_022648.1 696241 696333 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(696241..696333) Escherichia coli JJ1886 17429467 YP_008720704.1 CDS lnt NC_022648.1 696317 697855 R Transfers the fatty acyl group on membrane lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; apolipoprotein N-acyltransferase complement(696317..697855) Escherichia coli JJ1886 17429468 YP_008720705.1 CDS P423_03220 NC_022648.1 697880 698758 R involved in the transport of magnesium and cobalt ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter complement(697880..698758) Escherichia coli JJ1886 17429469 YP_008720706.1 CDS P423_03225 NC_022648.1 698848 699315 R Derived by automated computational analysis using gene prediction method: Protein Homology.; metal-binding heat shock protein complement(698848..699315) Escherichia coli JJ1886 17429470 YP_008720707.1 CDS P423_03230 NC_022648.1 699312 700352 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate hydrolase complement(699312..700352) Escherichia coli JJ1886 17429471 YP_008720708.1 CDS P423_03235 NC_022648.1 700505 701929 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); Derived by automated computational analysis using gene prediction method: Protein Homology.; (dimethylallyl)adenosine tRNA methylthiotransferase complement(700505..701929) Escherichia coli JJ1886 17429472 YP_008720709.1 CDS ubiF NC_022648.1 702075 703250 D catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 702075..703250 Escherichia coli JJ1886 17429473 YP_008720710.1 CDS P423_03280 NC_022648.1 704444 704881 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 704444..704881 Escherichia coli JJ1886 17429481 YP_008720711.1 CDS asnB NC_022648.1 704923 706587 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; asparagine synthetase B complement(704923..706587) Escherichia coli JJ1886 17429482 YP_008720712.1 CDS P423_03290 NC_022648.1 706843 707595 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UMP phosphatase complement(706843..707595) Escherichia coli JJ1886 17429483 YP_008720713.1 CDS P423_03295 NC_022648.1 707643 708863 R regulates the synthesis of glucosamine and N-acetylglucosamine by acting as a repressor of the nagEBACD operon and both a repressor and activator of the glmSU operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(707643..708863) Escherichia coli JJ1886 17429484 YP_008720714.1 CDS nagA NC_022648.1 708872 710020 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylglucosamine-6-phosphate deacetylase complement(708872..710020) Escherichia coli JJ1886 17429485 YP_008720715.1 CDS nagB NC_022648.1 710080 710880 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosamine-6-phosphate deaminase complement(710080..710880) Escherichia coli JJ1886 17429486 YP_008720716.1 CDS P423_03310 NC_022648.1 711213 713159 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylglucosamine transporter subunit IIABC 711213..713159 Escherichia coli JJ1886 17429487 YP_008720717.1 CDS P423_03315 NC_022648.1 713248 714528 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; citrate transporter complement(713248..714528) Escherichia coli JJ1886 17429488 YP_008720718.1 CDS P423_03320 NC_022648.1 714542 715012 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Toxin-antitoxin biofilm protein TabA complement(714542..715012) Escherichia coli JJ1886 17429489 YP_008720719.1 CDS P423_03325 NC_022648.1 715009 716178 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl hydrolase complement(715009..716178) Escherichia coli JJ1886 17429490 YP_008720720.1 CDS P423_03330 NC_022648.1 716214 716972 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(716214..716972) Escherichia coli JJ1886 17429491 YP_008720721.1 CDS P423_03335 NC_022648.1 717032 717919 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dihydrodipicolinate synthetase complement(717032..717919) Escherichia coli JJ1886 17429492 YP_008720722.1 CDS P423_03340 NC_022648.1 717923 718999 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DhaT complement(717923..718999) Escherichia coli JJ1886 17429493 YP_008720723.1 CDS P423_03345 NC_022648.1 719250 720485 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 719250..720485 Escherichia coli JJ1886 17429494 YP_008720724.1 CDS pdxA NC_022648.1 720478 721464 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxythreonine-4-phosphate dehydrogenase 720478..721464 Escherichia coli JJ1886 17429495 YP_008720725.1 CDS P423_03355 NC_022648.1 721496 722227 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DeoR family transcriptional regulator 721496..722227 Escherichia coli JJ1886 17429496 YP_008720726.1 CDS P423_03360 NC_022648.1 722447 724111 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminyl-tRNA synthetase 722447..724111 Escherichia coli JJ1886 17429497 YP_008720727.1 CDS P423_03365 NC_022648.1 724257 724343 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(724257..724343) Escherichia coli JJ1886 17429498 YP_008720728.1 CDS chiP NC_022648.1 724553 725959 D outer membrane porin involved in the transport of chitooligosaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; chitoporin 724553..725959 Escherichia coli JJ1886 17429499 YP_008720729.1 CDS P423_03375 NC_022648.1 726009 726335 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 726009..726335 Escherichia coli JJ1886 17429500 YP_008720730.1 CDS fur NC_022648.1 726419 726865 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric uptake regulator complement(726419..726865) Escherichia coli JJ1886 17429501 YP_008720731.1 CDS P423_03385 NC_022648.1 727154 727684 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin complement(727154..727684) Escherichia coli JJ1886 17429502 YP_008720732.1 CDS P423_03390 NC_022648.1 727824 728186 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LexA regulated protein complement(727824..728186) Escherichia coli JJ1886 17429503 YP_008720733.1 CDS P423_03395 NC_022648.1 728257 729021 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase complement(728257..729021) Escherichia coli JJ1886 17429504 YP_008720734.1 CDS P423_03400 NC_022648.1 729206 729751 D negative modulator of the initiation of chromosome replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; replication initiation regulator SeqA 729206..729751 Escherichia coli JJ1886 17429505 YP_008720735.1 CDS P423_03405 NC_022648.1 729777 731417 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglucomutase 729777..731417 Escherichia coli JJ1886 17429506 YP_008720736.1 CDS potE NC_022648.1 731474 732793 R catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine transporter complement(731474..732793) Escherichia coli JJ1886 17429507 YP_008720737.1 CDS P423_03415 NC_022648.1 732790 734997 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine decarboxylase complement(732790..734997) Escherichia coli JJ1886 17429508 YP_008720738.1 CDS P423_03420 NC_022648.1 735677 736354 R response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(735677..736354) Escherichia coli JJ1886 17429509 YP_008720739.1 CDS P423_03425 NC_022648.1 736351 739035 R sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein KdpD complement(736351..739035) Escherichia coli JJ1886 17429510 YP_008720740.1 CDS P423_03430 NC_022648.1 739028 739600 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit C complement(739028..739600) Escherichia coli JJ1886 17429511 YP_008720741.1 CDS P423_03435 NC_022648.1 739609 741657 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit B complement(739609..741657) Escherichia coli JJ1886 17429512 YP_008720742.1 CDS P423_03440 NC_022648.1 741680 743353 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit A complement(741680..743353) Escherichia coli JJ1886 17429513 YP_008720743.1 CDS kdpF NC_022648.1 743353 743442 R one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; potassium transporter TrkA complement(743353..743442) Escherichia coli JJ1886 17429514 YP_008720744.1 CDS P423_03450 NC_022648.1 743755 743961 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 743755..743961 Escherichia coli JJ1886 17429515 YP_008720745.1 CDS P423_03455 NC_022648.1 744062 744571 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 744062..744571 Escherichia coli JJ1886 17429516 YP_008720746.1 CDS P423_03460 NC_022648.1 744568 745986 D UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribodipyrimidine photolyase 744568..745986 Escherichia coli JJ1886 17429517 YP_008720747.1 CDS P423_03465 NC_022648.1 746028 747509 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(746028..747509) Escherichia coli JJ1886 17429518 YP_008720748.1 CDS P423_03470 NC_022648.1 747780 748523 D Derived by automated computational analysis using gene prediction method: Protein Homology.; metal-binding protein 747780..748523 Escherichia coli JJ1886 17429519 YP_008720749.1 CDS P423_03475 NC_022648.1 748546 749202 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 748546..749202 Escherichia coli JJ1886 17429520 YP_008720750.1 CDS P423_03480 NC_022648.1 749196 750128 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 749196..750128 Escherichia coli JJ1886 17429521 YP_008720751.1 CDS P423_03485 NC_022648.1 750118 750852 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LamB/YcsF family protein 750118..750852 Escherichia coli JJ1886 17429522 YP_008720752.1 CDS P423_03490 NC_022648.1 750888 751679 D 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease SymE 750888..751679 Escherichia coli JJ1886 17429523 YP_008720753.1 CDS P423_03495 NC_022648.1 751676 752722 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AbrB family transcriptional regulator complement(751676..752722) Escherichia coli JJ1886 17429524 YP_008720754.1 CDS P423_03500 NC_022648.1 752902 753615 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GntR family transcriptional regulator complement(752902..753615) Escherichia coli JJ1886 17429525 YP_008720755.1 CDS P423_03505 NC_022648.1 753879 754565 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; demethylmenaquinone methyltransferase 753879..754565 Escherichia coli JJ1886 17429526 YP_008720756.1 CDS P423_03510 NC_022648.1 754578 755591 D Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate oxidoreductase 754578..755591 Escherichia coli JJ1886 17429527 YP_008720757.1 CDS P423_03515 NC_022648.1 755603 756358 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3-oxoacyl-ACP reductase 755603..756358 Escherichia coli JJ1886 17429528 YP_008720758.1 CDS P423_03520 NC_022648.1 756373 756684 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hydrolase 756373..756684 Escherichia coli JJ1886 17429529 YP_008720759.1 CDS P423_03525 NC_022648.1 756684 757880 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hydrolase 756684..757880 Escherichia coli JJ1886 17429530 YP_008720760.1 CDS P423_03530 NC_022648.1 757908 758876 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; C4-dicarboxylate ABC transporter 757908..758876 Escherichia coli JJ1886 17429531 YP_008720761.1 CDS P423_03535 NC_022648.1 758936 759397 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; C4-dicarboxylate ABC transporter permease 758936..759397 Escherichia coli JJ1886 17429532 YP_008720762.1 CDS P423_03540 NC_022648.1 759397 760707 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; C4-dicarboxylate ABC transporter 759397..760707 Escherichia coli JJ1886 17429533 YP_008720763.1 CDS gltA NC_022648.1 760754 762037 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; type II citrate synthase complement(760754..762037) Escherichia coli JJ1886 17429534 YP_008720764.1 CDS sdhC NC_022648.1 762731 763135 D Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase cytochrome b556 large membrane subunit 762731..763135 Escherichia coli JJ1886 17429535 YP_008720765.1 CDS sdhD NC_022648.1 763129 763476 D Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase cytochrome b556 small membrane subunit 763129..763476 Escherichia coli JJ1886 17429536 YP_008720766.1 CDS sdhA NC_022648.1 763476 765242 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase flavoprotein subunit 763476..765242 Escherichia coli JJ1886 17429537 YP_008720767.1 CDS sdhB NC_022648.1 765258 765974 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase iron-sulfur subunit 765258..765974 Escherichia coli JJ1886 17429538 YP_008720768.1 CDS P423_03570 NC_022648.1 766336 769137 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxoglutarate dehydrogenase E1 766336..769137 Escherichia coli JJ1886 17429539 YP_008720769.1 CDS P423_03575 NC_022648.1 769152 770369 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide succinyltransferase 769152..770369 Escherichia coli JJ1886 17429540 YP_008720770.1 CDS sucC NC_022648.1 770463 771629 D catalyzes the interconversion of succinyl-CoA and succinate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate--CoA ligase subunit beta 770463..771629 Escherichia coli JJ1886 17429541 YP_008720771.1 CDS P423_03585 NC_022648.1 771629 772498 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyl-CoA synthetase subunit alpha 771629..772498 Escherichia coli JJ1886 17429542 YP_008720772.1 CDS P423_03590 NC_022648.1 772602 773324 R regulates the succiny-lCoA synthetase operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator complement(772602..773324) Escherichia coli JJ1886 17429543 YP_008720773.1 CDS P423_03595 NC_022648.1 773457 775409 D FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB 773457..775409 Escherichia coli JJ1886 17429544 YP_008720774.1 CDS P423_03600 NC_022648.1 775427 778060 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-mannosidase 775427..778060 Escherichia coli JJ1886 17429545 YP_008720775.1 CDS P423_03605 NC_022648.1 778258 779451 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 778258..779451 Escherichia coli JJ1886 17429546 YP_008720776.1 CDS P423_03610 NC_022648.1 779656 779841 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 779656..779841 Escherichia coli JJ1886 17429547 YP_008720777.1 CDS P423_03615 NC_022648.1 780994 782562 D part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit I 780994..782562 Escherichia coli JJ1886 17429548 YP_008720778.1 CDS P423_03620 NC_022648.1 782578 783717 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit II 782578..783717 Escherichia coli JJ1886 17429549 YP_008720779.1 CDS P423_03625 NC_022648.1 783732 783845 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 783732..783845 Escherichia coli JJ1886 17429550 YP_008720780.1 CDS P423_03630 NC_022648.1 783845 784138 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 783845..784138 Escherichia coli JJ1886 17429551 YP_008720781.1 CDS P423_03635 NC_022648.1 784288 784692 D catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase 784288..784692 Escherichia coli JJ1886 17429552 YP_008720782.1 CDS P423_03640 NC_022648.1 784689 785381 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin transporter 784689..785381 Escherichia coli JJ1886 17429553 YP_008720783.1 CDS P423_03645 NC_022648.1 785385 785813 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin transporter 785385..785813 Escherichia coli JJ1886 17429554 YP_008720784.1 CDS tolA NC_022648.1 785878 787188 D inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell envelope integrity inner membrane protein TolA 785878..787188 Escherichia coli JJ1886 17429555 YP_008720785.1 CDS tolB NC_022648.1 787321 788613 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocation protein TolB 787321..788613 Escherichia coli JJ1886 17429556 YP_008720786.1 CDS P423_03660 NC_022648.1 788648 789169 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-associated outer membrane lipoprotein 788648..789169 Escherichia coli JJ1886 17429557 YP_008720787.1 CDS P423_03665 NC_022648.1 789179 789970 D periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tol-pal system protein YbgF 789179..789970 Escherichia coli JJ1886 17429558 YP_008720788.1 CDS P423_03705 NC_022648.1 791116 792159 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinolinate synthetase 791116..792159 Escherichia coli JJ1886 17429566 YP_008720789.1 CDS P423_03710 NC_022648.1 792197 792916 D involved in nicotinamide riboside transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamide riboside transporter PnuC 792197..792916 Escherichia coli JJ1886 17429567 YP_008720790.1 CDS P423_03715 NC_022648.1 792913 793854 R involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter ZitB complement(792913..793854) Escherichia coli JJ1886 17429568 YP_008720791.1 CDS P423_03720 NC_022648.1 793968 794348 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(793968..794348) Escherichia coli JJ1886 17429569 YP_008720792.1 CDS P423_03725 NC_022648.1 794664 795716 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase 794664..795716 Escherichia coli JJ1886 17429570 YP_008720793.1 CDS gpmA NC_022648.1 795883 796635 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglyceromutase complement(795883..796635) Escherichia coli JJ1886 17429571 YP_008720794.1 CDS galM NC_022648.1 796838 797878 R mutarotase; catalyzes the conversion of beta-galactose to the alpha-anomer; links the metabolism of lactose and galactose; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactose-1-epimerase complement(796838..797878) Escherichia coli JJ1886 17429572 YP_008720795.1 CDS P423_03740 NC_022648.1 797872 799020 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactokinase complement(797872..799020) Escherichia coli JJ1886 17429573 YP_008720796.1 CDS P423_03745 NC_022648.1 799024 800070 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactose-1-phosphate uridylyltransferase complement(799024..800070) Escherichia coli JJ1886 17429574 YP_008720797.1 CDS P423_03750 NC_022648.1 800080 801096 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-galactose-4-epimerase complement(800080..801096) Escherichia coli JJ1886 17429575 YP_008720798.1 CDS P423_03755 NC_022648.1 801359 802831 R contains 2 ATP-binding cassettes; involved in the transport of molybdenum; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum ABC transporter ATP-binding protein complement(801359..802831) Escherichia coli JJ1886 17429576 YP_008720799.1 CDS P423_03760 NC_022648.1 802899 803687 R represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(802899..803687) Escherichia coli JJ1886 17429577 YP_008720800.1 CDS P423_03765 NC_022648.1 803816 803965 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 803816..803965 Escherichia coli JJ1886 17429578 YP_008720801.1 CDS modA NC_022648.1 804132 804905 D with ModCB is involved in the high-affinity transport of molybdate; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum ABC transporter substrate-binding protein 804132..804905 Escherichia coli JJ1886 17429579 YP_008720802.1 CDS modB NC_022648.1 804905 805594 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter permease 804905..805594 Escherichia coli JJ1886 17429580 YP_008720803.1 CDS modC NC_022648.1 805597 806655 D Part of the ABC transporter complex modABC involved in molybdenum import; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter ATP-binding protein 805597..806655 Escherichia coli JJ1886 17429581 YP_008720804.1 CDS P423_03785 NC_022648.1 806656 807474 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxal phosphate phosphatase complement(806656..807474) Escherichia coli JJ1886 17429582 YP_008720805.1 CDS P423_03790 NC_022648.1 807629 808624 D catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconolactonase 807629..808624 Escherichia coli JJ1886 17429583 YP_008720806.1 CDS P423_03795 NC_022648.1 808665 809618 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(808665..809618) Escherichia coli JJ1886 17429584 YP_008720807.1 CDS P423_03800 NC_022648.1 809633 809716 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 809633..809716 Escherichia coli JJ1886 17429585 YP_008720808.1 CDS P423_03805 NC_022648.1 809802 810854 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 809802..810854 Escherichia coli JJ1886 17429586 YP_008720809.1 CDS P423_03810 NC_022648.1 810930 812363 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 810930..812363 Escherichia coli JJ1886 17429587 YP_008720810.1 CDS P423_03815 NC_022648.1 812546 814807 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydratase 812546..814807 Escherichia coli JJ1886 17429588 YP_008720811.1 CDS P423_03820 NC_022648.1 814948 816231 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase complement(814948..816231) Escherichia coli JJ1886 17429589 YP_008720812.1 CDS P423_03825 NC_022648.1 816383 816859 R YbhB; similar to rat and human kinase inhibitory proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase inhibitor protein complement(816383..816859) Escherichia coli JJ1886 17429590 YP_008720813.1 CDS P423_03830 NC_022648.1 816918 818207 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylmethionine--8-amino-7-oxononanoate aminotransferase complement(816918..818207) Escherichia coli JJ1886 17429591 YP_008720814.1 CDS P423_03835 NC_022648.1 818294 819334 D catalyzes the formation of biotin from dethiobiotin; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin synthase 818294..819334 Escherichia coli JJ1886 17429592 YP_008720815.1 CDS P423_03840 NC_022648.1 819331 820485 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 8-amino-7-oxononanoate synthase 819331..820485 Escherichia coli JJ1886 17429593 YP_008720816.1 CDS P423_03845 NC_022648.1 820472 821227 D methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin biosynthesis protein BioC 820472..821227 Escherichia coli JJ1886 17429594 YP_008720817.1 CDS bioD NC_022648.1 821220 821897 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; Derived by automated computational analysis using gene prediction method: Protein Homology.; dithiobiotin synthetase 821220..821897 Escherichia coli JJ1886 17429595 YP_008720818.1 CDS P423_03855 NC_022648.1 822476 824497 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit B 822476..824497 Escherichia coli JJ1886 17429596 YP_008720819.1 CDS P423_03860 NC_022648.1 824535 825443 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(824535..825443) Escherichia coli JJ1886 17429597 YP_008720820.1 CDS moaA NC_022648.1 825840 826829 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein A 825840..826829 Escherichia coli JJ1886 17429598 YP_008720821.1 CDS P423_03870 NC_022648.1 826851 827363 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein B 826851..827363 Escherichia coli JJ1886 17429599 YP_008720822.1 CDS moaC NC_022648.1 827366 827851 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein MoaC 827366..827851 Escherichia coli JJ1886 17429600 YP_008720823.1 CDS moaD NC_022648.1 827844 828089 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin synthase small subunit 827844..828089 Escherichia coli JJ1886 17429601 YP_008720824.1 CDS moaE NC_022648.1 828091 828543 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin guanine dinucleotide biosynthesis protein MoaE 828091..828543 Escherichia coli JJ1886 17429602 YP_008720825.1 CDS P423_03890 NC_022648.1 828680 829384 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 828680..829384 Escherichia coli JJ1886 17429603 YP_008720826.1 CDS P423_03895 NC_022648.1 829471 829563 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 829471..829563 Escherichia coli JJ1886 17429604 YP_008720827.1 CDS P423_03900 NC_022648.1 829563 830303 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 829563..830303 Escherichia coli JJ1886 17429605 YP_008720828.1 CDS P423_03905 NC_022648.1 830339 831295 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(830339..831295) Escherichia coli JJ1886 17429606 YP_008720829.1 CDS P423_03910 NC_022648.1 831295 832536 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cardiolipin synthase 2 complement(831295..832536) Escherichia coli JJ1886 17429607 YP_008720830.1 CDS P423_03915 NC_022648.1 832533 833294 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(832533..833294) Escherichia coli JJ1886 17429608 YP_008720831.1 CDS P423_03920 NC_022648.1 833427 833837 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 833427..833837 Escherichia coli JJ1886 17429609 YP_008720832.1 CDS P423_03925 NC_022648.1 833799 834905 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(833799..834905) Escherichia coli JJ1886 17429610 YP_008720833.1 CDS P423_03930 NC_022648.1 834916 836049 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(834916..836049) Escherichia coli JJ1886 17429611 YP_008720834.1 CDS P423_03935 NC_022648.1 836042 837778 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein complement(836042..837778) Escherichia coli JJ1886 17429612 YP_008720835.1 CDS P423_03940 NC_022648.1 837771 838769 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(837771..838769) Escherichia coli JJ1886 17429613 YP_008720836.1 CDS P423_03945 NC_022648.1 838769 839452 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(838769..839452) Escherichia coli JJ1886 17429614 YP_008720837.1 CDS P423_03950 NC_022648.1 839669 841030 D this helicase is not essential cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 839669..841030 Escherichia coli JJ1886 17429615 YP_008720838.1 CDS P423_03955 NC_022648.1 841065 841301 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 841065..841301 Escherichia coli JJ1886 17429616 YP_008720839.1 CDS P423_03960 NC_022648.1 841263 841568 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Swarming motility protein ybiA complement(841263..841568) Escherichia coli JJ1886 17429617 YP_008720840.1 CDS dinG NC_022648.1 841567 843717 D helicase involved in DNA repair and perhaps also replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase DinG 841567..843717 Escherichia coli JJ1886 17429618 YP_008720841.1 CDS P423_03970 NC_022648.1 843745 844707 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase 843745..844707 Escherichia coli JJ1886 17429619 YP_008720842.1 CDS P423_03975 NC_022648.1 844847 845932 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydrogenase 844847..845932 Escherichia coli JJ1886 17429620 YP_008720843.1 CDS P423_03980 NC_022648.1 846070 846330 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(846070..846330) Escherichia coli JJ1886 17429621 YP_008720844.1 CDS P423_03985 NC_022648.1 846595 846861 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(846595..846861) Escherichia coli JJ1886 17429622 YP_008720845.1 CDS P423_03990 NC_022648.1 846935 847612 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe(II)-dependent oxygenase complement(846935..847612) Escherichia coli JJ1886 17429623 YP_008720846.1 CDS P423_03995 NC_022648.1 847654 849936 R Fiu; YbiL; porin involved in the uptake of iron complexed with catecholate siderophores (e.g. dihydroxybenzoylserine, dihydroxybenzoate) and beta lactam agents; Fiu interacts with TonB which provides the energy required for transport across the outer membrane; acts as a receptor for iron-siderophores and microcins E492, M, and H47; outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; catecholate siderophore receptor Fiu complement(847654..849936) Escherichia coli JJ1886 17429624 YP_008720847.1 CDS P423_04000 NC_022648.1 850201 850461 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(850201..850461) Escherichia coli JJ1886 17429625 YP_008720848.1 CDS P423_04005 NC_022648.1 850737 851663 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 850737..851663 Escherichia coli JJ1886 17429626 YP_008720849.1 CDS P423_04010 NC_022648.1 851660 853885 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel protein complement(851660..853885) Escherichia coli JJ1886 17429627 YP_008720850.1 CDS P423_04015 NC_022648.1 854002 854724 R Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine ABC transporter ATP-binding protein complement(854002..854724) Escherichia coli JJ1886 17429628 YP_008720851.1 CDS glnP NC_022648.1 854721 855380 R similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter permease complement(854721..855380) Escherichia coli JJ1886 17429629 YP_008720852.1 CDS glnH NC_022648.1 855519 856265 R similar to periplasmic-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(855519..856265) Escherichia coli JJ1886 17429630 YP_008720853.1 CDS P423_04030 NC_022648.1 856669 857172 R binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA starvation/stationary phase protection protein Dps complement(856669..857172) Escherichia coli JJ1886 17429631 YP_008720854.1 CDS P423_04035 NC_022648.1 857472 858359 R Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB complement(857472..858359) Escherichia coli JJ1886 17429632 YP_008720855.1 CDS ompX NC_022648.1 858712 859227 D OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein X 858712..859227 Escherichia coli JJ1886 17429633 YP_008720856.1 CDS P423_04045 NC_022648.1 859276 860859 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoethanolamine transferase complement(859276..860859) Escherichia coli JJ1886 17429634 YP_008720857.1 CDS P423_04050 NC_022648.1 861131 861238 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(861131..861238) Escherichia coli JJ1886 17429635 YP_008720858.1 CDS P423_04055 NC_022648.1 861445 861912 D Transcriptional regulator that represses the manganese transporter MntH when manganese is present; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 861445..861912 Escherichia coli JJ1886 17429636 YP_008720859.1 CDS P423_04060 NC_022648.1 861909 863027 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 861909..863027 Escherichia coli JJ1886 17429637 YP_008720860.1 CDS P423_04065 NC_022648.1 863085 864005 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-transpeptidase complement(863085..864005) Escherichia coli JJ1886 17429638 YP_008720861.1 CDS P423_04070 NC_022648.1 864224 865816 D Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATP-binding protein 864224..865816 Escherichia coli JJ1886 17429639 YP_008720862.1 CDS P423_04075 NC_022648.1 865860 866012 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 865860..866012 Escherichia coli JJ1886 17429640 YP_008720863.1 CDS P423_04080 NC_022648.1 866016 866831 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphatase complement(866016..866831) Escherichia coli JJ1886 17429641 YP_008720864.1 CDS P423_04085 NC_022648.1 866977 869409 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate acetyltransferase complement(866977..869409) Escherichia coli JJ1886 17429642 YP_008720865.1 CDS P423_04090 NC_022648.1 869415 870314 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate-lyase 3-activating protein complement(869415..870314) Escherichia coli JJ1886 17429643 YP_008720866.1 CDS P423_04095 NC_022648.1 870445 871107 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase 870445..871107 Escherichia coli JJ1886 17429644 YP_008720867.1 CDS P423_04100 NC_022648.1 871183 871932 R Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-synthase adenylyltransferase complement(871183..871932) Escherichia coli JJ1886 17429645 YP_008720868.1 CDS P423_04105 NC_022648.1 871932 873167 R is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein MoeA complement(871932..873167) Escherichia coli JJ1886 17429646 YP_008720869.1 CDS P423_04110 NC_022648.1 873371 874336 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isoaspartyl peptidase 873371..874336 Escherichia coli JJ1886 17429647 YP_008720870.1 CDS P423_04115 NC_022648.1 874323 876194 D with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein 874323..876194 Escherichia coli JJ1886 17429648 YP_008720871.1 CDS P423_04120 NC_022648.1 876214 877752 D with GsiACD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter substrate-binding protein GsiB 876214..877752 Escherichia coli JJ1886 17429649 YP_008720872.1 CDS P423_04125 NC_022648.1 877770 878690 D with GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter permease 877770..878690 Escherichia coli JJ1886 17429650 YP_008720873.1 CDS P423_04130 NC_022648.1 878693 879604 D with GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter permease GsiD 878693..879604 Escherichia coli JJ1886 17429651 YP_008720874.1 CDS P423_04135 NC_022648.1 879781 882129 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase 879781..882129 Escherichia coli JJ1886 17429652 YP_008720875.1 CDS P423_04140 NC_022648.1 882137 883465 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 882137..883465 Escherichia coli JJ1886 17429653 YP_008720876.1 CDS rimO NC_022648.1 883512 884837 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein S12 methylthiotransferase complement(883512..884837) Escherichia coli JJ1886 17429654 YP_008720877.1 CDS bssR NC_022648.1 885050 885433 D BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm formation regulatory protein BssR 885050..885433 Escherichia coli JJ1886 17429655 YP_008720878.1 CDS P423_04155 NC_022648.1 885544 886659 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldose dehydrogenase 885544..886659 Escherichia coli JJ1886 17429656 YP_008720879.1 CDS P423_04160 NC_022648.1 886656 887282 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase complement(886656..887282) Escherichia coli JJ1886 17429657 YP_008720880.1 CDS P423_04165 NC_022648.1 887520 888731 D penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase 887520..888731 Escherichia coli JJ1886 17429658 YP_008720881.1 CDS P423_04170 NC_022648.1 888778 889536 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(888778..889536) Escherichia coli JJ1886 17429659 YP_008720882.1 CDS P423_04175 NC_022648.1 889594 890190 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP pyrophosphate phosphatase complement(889594..890190) Escherichia coli JJ1886 17429660 YP_008720883.1 CDS P423_04180 NC_022648.1 890475 891707 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 890475..891707 Escherichia coli JJ1886 17429661 YP_008720884.1 CDS P423_04185 NC_022648.1 891748 892032 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(891748..892032) Escherichia coli JJ1886 17429662 YP_008720885.1 CDS P423_04190 NC_022648.1 892118 892933 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphatase SupH complement(892118..892933) Escherichia coli JJ1886 17429663 YP_008720886.1 CDS P423_04195 NC_022648.1 892933 894141 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(892933..894141) Escherichia coli JJ1886 17429664 YP_008720887.1 CDS P423_04200 NC_022648.1 894225 894761 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 894225..894761 Escherichia coli JJ1886 17429665 YP_008720888.1 CDS P423_04205 NC_022648.1 894937 896622 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(894937..896622) Escherichia coli JJ1886 17429666 YP_008720889.1 CDS P423_04210 NC_022648.1 896891 897268 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 896891..897268 Escherichia coli JJ1886 17429667 YP_008720890.1 CDS P423_04215 NC_022648.1 897298 897555 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin complement(897298..897555) Escherichia coli JJ1886 17429668 YP_008720891.1 CDS P423_04220 NC_022648.1 897715 898002 D YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 897715..898002 Escherichia coli JJ1886 17429669 YP_008720892.1 CDS P423_04225 NC_022648.1 897986 898708 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitroreductase A 897986..898708 Escherichia coli JJ1886 17429670 YP_008720893.1 CDS P423_04230 NC_022648.1 898769 899671 D responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein S6 modification protein 898769..899671 Escherichia coli JJ1886 17429671 YP_008720894.1 CDS P423_04235 NC_022648.1 899759 900235 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 899759..900235 Escherichia coli JJ1886 17429672 YP_008720895.1 CDS P423_04240 NC_022648.1 900585 901697 D Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter substrate-binding protein 900585..901697 Escherichia coli JJ1886 17429673 YP_008720896.1 CDS P423_04245 NC_022648.1 901792 902925 D with ProWX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter ATP-binding protein 901792..902925 Escherichia coli JJ1886 17429674 YP_008720897.1 CDS P423_04250 NC_022648.1 902935 903879 D Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease 902935..903879 Escherichia coli JJ1886 17429675 YP_008720898.1 CDS P423_04255 NC_022648.1 903876 904721 D Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease 903876..904721 Escherichia coli JJ1886 17429676 YP_008720899.1 CDS P423_04260 NC_022648.1 904781 905269 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 904781..905269 Escherichia coli JJ1886 17429677 YP_008720900.1 CDS rumB NC_022648.1 905310 906437 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 905310..906437 Escherichia coli JJ1886 17429678 YP_008720901.1 CDS P423_04270 NC_022648.1 906466 907197 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter substrate-binding protein complement(906466..907197) Escherichia coli JJ1886 17429679 YP_008720902.1 CDS artM NC_022648.1 907423 908091 R with ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine transporter permease subunit ArtM complement(907423..908091) Escherichia coli JJ1886 17429680 YP_008720903.1 CDS P423_04280 NC_022648.1 908091 908807 R with ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine transporter permease subunit ArtQ complement(908091..908807) Escherichia coli JJ1886 17429681 YP_008720904.1 CDS P423_04285 NC_022648.1 908814 909545 R with ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter substrate-binding protein complement(908814..909545) Escherichia coli JJ1886 17429682 YP_008720905.1 CDS P423_04290 NC_022648.1 909563 910291 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein complement(909563..910291) Escherichia coli JJ1886 17429683 YP_008720906.1 CDS P423_04295 NC_022648.1 910509 911024 R induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(910509..911024) Escherichia coli JJ1886 17429684 YP_008720907.1 CDS P423_04300 NC_022648.1 911150 911473 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 911150..911473 Escherichia coli JJ1886 17429685 YP_008720908.1 CDS P423_04305 NC_022648.1 911470 912300 D catalyzes the cleavage of the bond between muamic acid and l-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 911470..912300 Escherichia coli JJ1886 17429686 YP_008720909.1 CDS P423_04310 NC_022648.1 912297 913346 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(912297..913346) Escherichia coli JJ1886 17429687 YP_008720910.1 CDS P423_04315 NC_022648.1 913409 914839 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(913409..914839) Escherichia coli JJ1886 17429688 YP_008720911.1 CDS P423_04320 NC_022648.1 914850 915851 R low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine aldolase complement(914850..915851) Escherichia coli JJ1886 17429689 YP_008720912.1 CDS P423_04325 NC_022648.1 915888 917606 R catalyzes the formation of acetate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate dehydrogenase complement(915888..917606) Escherichia coli JJ1886 17429690 YP_008720913.1 CDS P423_04330 NC_022648.1 917739 918707 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(917739..918707) Escherichia coli JJ1886 17429691 YP_008720914.1 CDS P423_04335 NC_022648.1 918719 920371 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxylamine reductase complement(918719..920371) Escherichia coli JJ1886 17429692 YP_008720915.1 CDS P423_04340 NC_022648.1 920515 921414 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(920515..921414) Escherichia coli JJ1886 17429693 YP_008720916.1 CDS P423_04345 NC_022648.1 921392 921526 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 921392..921526 Escherichia coli JJ1886 17429694 YP_008720917.1 CDS P423_04350 NC_022648.1 921743 921832 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 921743..921832 Escherichia coli JJ1886 17429695 YP_008720918.1 CDS P423_04355 NC_022648.1 921829 922524 R porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; Derived by automated computational analysis using gene prediction method: Protein Homology.; aquaporin Z complement(921829..922524) Escherichia coli JJ1886 17429696 YP_008720919.1 CDS P423_04360 NC_022648.1 922949 924607 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 922949..924607 Escherichia coli JJ1886 17429697 YP_008720920.1 CDS P423_04365 NC_022648.1 924604 925596 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(924604..925596) Escherichia coli JJ1886 17429698 YP_008720921.1 CDS P423_04370 NC_022648.1 925711 926826 D confers macrolide resistance via active drug efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; macrolide transporter subunit MacA 925711..926826 Escherichia coli JJ1886 17429699 YP_008720922.1 CDS P423_04375 NC_022648.1 926823 928769 D with MacA is involved in the export of macrolide; Derived by automated computational analysis using gene prediction method: Protein Homology.; macrolide ABC transporter ATP-binding protein 926823..928769 Escherichia coli JJ1886 17429700 YP_008720923.1 CDS P423_04380 NC_022648.1 928842 929066 R inhibits DNA replication at both initiation and elongation steps; stationary phase and starvation inducible; Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein complement(928842..929066) Escherichia coli JJ1886 17429701 YP_008720924.1 CDS clpS NC_022648.1 929389 929709 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp protease adaptor protein ClpS 929389..929709 Escherichia coli JJ1886 17429702 YP_008720925.1 CDS clpA NC_022648.1 929740 932016 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp protease ATP-binding protein 929740..932016 Escherichia coli JJ1886 17429703 YP_008720926.1 CDS P423_04400 NC_022648.1 932701 932919 R Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-1 complement(932701..932919) Escherichia coli JJ1886 17429705 YP_008720927.1 CDS aat NC_022648.1 933204 933908 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucyl/phenylalanyl-tRNA--protein transferase complement(933204..933908) Escherichia coli JJ1886 17429706 YP_008720928.1 CDS P423_04410 NC_022648.1 933950 935671 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein complement(933950..935671) Escherichia coli JJ1886 17429707 YP_008720929.1 CDS P423_04415 NC_022648.1 935672 937438 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein complement(935672..937438) Escherichia coli JJ1886 17429708 YP_008720930.1 CDS P423_04420 NC_022648.1 937561 938631 R catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin reductase complement(937561..938631) Escherichia coli JJ1886 17429709 YP_008720931.1 CDS P423_04425 NC_022648.1 939070 939564 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; AsnC family transcriptional regulator 939070..939564 Escherichia coli JJ1886 17429710 YP_008720932.1 CDS P423_04430 NC_022648.1 939699 943805 D DNA-binding membrane protein required for chromosome resolution and partitioning; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsK 939699..943805 Escherichia coli JJ1886 17429711 YP_008720933.1 CDS lolA NC_022648.1 943964 944575 D participates with LolB in the incorporation of lipoprotein into the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein chaperone 943964..944575 Escherichia coli JJ1886 17429712 YP_008720934.1 CDS P423_04440 NC_022648.1 944586 945929 D Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RarA 944586..945929 Escherichia coli JJ1886 17429713 YP_008720935.1 CDS P423_04445 NC_022648.1 946020 947312 D Derived by automated computational analysis using gene prediction method: Protein Homology.; seryl-tRNA synthetase 946020..947312 Escherichia coli JJ1886 17429714 YP_008720936.1 CDS P423_04450 NC_022648.1 947618 947758 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hok/gef family protein complement(947618..947758) Escherichia coli JJ1886 17429715 YP_008720937.1 CDS P423_04455 NC_022648.1 947950 948210 R in E. coli K-12 this is in prophage P2 remnant; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(947950..948210) Escherichia coli JJ1886 17429716 YP_008720938.1 CDS P423_04460 NC_022648.1 948251 949360 R Derived by automated computational analysis using gene prediction method: Protein Homology.; late control protein D complement(948251..949360) Escherichia coli JJ1886 17429717 YP_008720939.1 CDS P423_04465 NC_022648.1 949518 950702 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail sheath protein 949518..950702 Escherichia coli JJ1886 17429718 YP_008720940.1 CDS P423_04470 NC_022648.1 950702 951214 D Derived by automated computational analysis using gene prediction method: Protein Homology.; major tail tube protein 950702..951214 Escherichia coli JJ1886 17429719 YP_008720941.1 CDS P423_04475 NC_022648.1 951270 951644 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein 951270..951644 Escherichia coli JJ1886 17429720 YP_008720942.1 CDS P423_04480 NC_022648.1 951653 951808 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 951653..951808 Escherichia coli JJ1886 17429721 YP_008720943.1 CDS P423_04485 NC_022648.1 954615 955103 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail assembly protein 954615..955103 Escherichia coli JJ1886 17433814 YP_008720944.1 CDS P423_04490 NC_022648.1 955132 955731 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA invertase complement(955132..955731) Escherichia coli JJ1886 17429723 YP_008720945.1 CDS P423_04495 NC_022648.1 955959 956744 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 955959..956744 Escherichia coli JJ1886 17429724 YP_008720946.1 CDS P423_04500 NC_022648.1 957312 957845 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail fiber assembly protein complement(957312..957845) Escherichia coli JJ1886 17429725 YP_008720947.1 CDS P423_04505 NC_022648.1 957848 959833 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phage tail protein complement(957848..959833) Escherichia coli JJ1886 17429726 YP_008720948.1 CDS P423_04510 NC_022648.1 959836 960366 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(959836..960366) Escherichia coli JJ1886 17429727 YP_008720949.1 CDS P423_04515 NC_022648.1 960359 961255 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate assembly protein complement(960359..961255) Escherichia coli JJ1886 17429728 YP_008720950.1 CDS P423_04520 NC_022648.1 961259 961609 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate assembly protein complement(961259..961609) Escherichia coli JJ1886 17429729 YP_008720951.1 CDS P423_04525 NC_022648.1 961606 962187 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate assembly protein complement(961606..962187) Escherichia coli JJ1886 17429730 YP_008720952.1 CDS P423_04530 NC_022648.1 962184 962819 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein complement(962184..962819) Escherichia coli JJ1886 17429731 YP_008720953.1 CDS P423_04535 NC_022648.1 962812 963279 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein complement(962812..963279) Escherichia coli JJ1886 17429732 YP_008720954.1 CDS P423_04540 NC_022648.1 963303 965180 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 9-O-acetyl-N-acetylneuraminic acid deacetylase complement(963303..965180) Escherichia coli JJ1886 17429733 YP_008720955.1 CDS P423_04545 NC_022648.1 965319 965714 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(965319..965714) Escherichia coli JJ1886 17429734 YP_008720956.1 CDS P423_04550 NC_022648.1 965711 966103 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M15 complement(965711..966103) Escherichia coli JJ1886 17429735 YP_008720957.1 CDS P423_04555 NC_022648.1 966100 966438 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; holin complement(966100..966438) Escherichia coli JJ1886 17429736 YP_008720958.1 CDS P423_04560 NC_022648.1 966426 966626 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein X complement(966426..966626) Escherichia coli JJ1886 17429737 YP_008720959.1 CDS P423_04565 NC_022648.1 966626 967120 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phage head protein complement(966626..967120) Escherichia coli JJ1886 17429738 YP_008720960.1 CDS P423_04570 NC_022648.1 967222 968022 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; terminase complement(967222..968022) Escherichia coli JJ1886 17429739 YP_008720961.1 CDS P423_04575 NC_022648.1 968067 969119 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(968067..969119) Escherichia coli JJ1886 17429740 YP_008720962.1 CDS P423_04580 NC_022648.1 969143 969979 R Derived by automated computational analysis using gene prediction method: Protein Homology.; precorrin-8W decarboxylase complement(969143..969979) Escherichia coli JJ1886 17429741 YP_008720963.1 CDS P423_04585 NC_022648.1 970134 971885 D Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase 970134..971885 Escherichia coli JJ1886 17429742 YP_008720964.1 CDS P423_04590 NC_022648.1 971885 972931 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Presumed portal vertex protein 971885..972931 Escherichia coli JJ1886 17429743 YP_008720965.1 CDS P423_04595 NC_022648.1 972946 973470 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(972946..973470) Escherichia coli JJ1886 17429744 YP_008720966.1 CDS P423_04600 NC_022648.1 973614 973742 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(973614..973742) Escherichia coli JJ1886 17429745 YP_008720967.1 CDS P423_04605 NC_022648.1 974194 974691 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 974194..974691 Escherichia coli JJ1886 17429746 YP_008720968.1 CDS P423_04610 NC_022648.1 974731 975573 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 974731..975573 Escherichia coli JJ1886 17429747 YP_008720969.1 CDS P423_04615 NC_022648.1 975657 975971 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptide transporter complement(975657..975971) Escherichia coli JJ1886 17429748 YP_008720970.1 CDS P423_04620 NC_022648.1 975976 976935 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; recombinase complement(975976..976935) Escherichia coli JJ1886 17429749 YP_008720971.1 CDS P423_04625 NC_022648.1 977012 979834 R Derived by automated computational analysis using gene prediction method: Protein Homology.; replication protein complement(977012..979834) Escherichia coli JJ1886 17429750 YP_008720972.1 CDS P423_04630 NC_022648.1 979841 980206 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(979841..980206) Escherichia coli JJ1886 17429751 YP_008720973.1 CDS P423_04635 NC_022648.1 980279 980509 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; derepression protein complement(980279..980509) Escherichia coli JJ1886 17429752 YP_008720974.1 CDS P423_04640 NC_022648.1 980832 981131 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(980832..981131) Escherichia coli JJ1886 17429753 YP_008720975.1 CDS P423_04645 NC_022648.1 981128 981394 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MarR family transcriptional regulator complement(981128..981394) Escherichia coli JJ1886 17429754 YP_008720976.1 CDS P423_04650 NC_022648.1 981391 981594 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(981391..981594) Escherichia coli JJ1886 17429755 YP_008720977.1 CDS P423_04655 NC_022648.1 981618 982028 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(981618..982028) Escherichia coli JJ1886 17429756 YP_008720978.1 CDS P423_04660 NC_022648.1 982122 982235 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(982122..982235) Escherichia coli JJ1886 17429757 YP_008720979.1 CDS P423_04665 NC_022648.1 982232 982474 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(982232..982474) Escherichia coli JJ1886 17429758 YP_008720980.1 CDS P423_04670 NC_022648.1 982486 982764 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(982486..982764) Escherichia coli JJ1886 17429759 YP_008720981.1 CDS P423_04675 NC_022648.1 982775 983125 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(982775..983125) Escherichia coli JJ1886 17429760 YP_008720982.1 CDS P423_04680 NC_022648.1 983263 983454 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 983263..983454 Escherichia coli JJ1886 17429761 YP_008720983.1 CDS P423_04685 NC_022648.1 983461 983883 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(983461..983883) Escherichia coli JJ1886 17429762 YP_008720984.1 CDS P423_04690 NC_022648.1 983888 984409 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator complement(983888..984409) Escherichia coli JJ1886 17429763 YP_008720985.1 CDS P423_04695 NC_022648.1 984493 984855 D Derived by automated computational analysis using gene prediction method: Protein Homology.; repressor 984493..984855 Escherichia coli JJ1886 17429764 YP_008720986.1 CDS P423_04700 NC_022648.1 984925 985917 D Int; binds dsDNA; cleaves and religates DNA through a covalent phosphotyrosine intermediate; bacteriophage P2 Int mediates the site-specific recombination event leading to integration or excision of the phage genome into or out of the Escherichia coli chromosome; integrative recombination occurs between the phage attachment site attP and the bacterial attachment site attB, integrative recombination also requires E. coli IHF; excision requires IHF and the phage-encoded Cox protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 984925..985917 Escherichia coli JJ1886 17429765 YP_008720987.1 CDS P423_04705 NC_022648.1 986217 988661 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A 986217..988661 Escherichia coli JJ1886 17429766 YP_008720988.1 CDS P423_04710 NC_022648.1 988672 989289 D oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B 988672..989289 Escherichia coli JJ1886 17429767 YP_008720989.1 CDS P423_04715 NC_022648.1 989291 990154 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit C 989291..990154 Escherichia coli JJ1886 17429768 YP_008720990.1 CDS P423_04720 NC_022648.1 990190 990816 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(990190..990816) Escherichia coli JJ1886 17429769 YP_008720991.1 CDS P423_04725 NC_022648.1 991130 992278 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 991130..992278 Escherichia coli JJ1886 17429770 YP_008720992.1 CDS pflA NC_022648.1 992375 993115 R activates pyruvate formate-lyase 1 under anaerobic conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate lyase-activating protein complement(992375..993115) Escherichia coli JJ1886 17429771 YP_008720993.1 CDS P423_04735 NC_022648.1 993307 995589 R formate acetyltransferase; catalyzes the formation of formate and acetyl-CoA from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; keto-acid formate acetyltransferase complement(993307..995589) Escherichia coli JJ1886 17429772 YP_008720994.1 CDS P423_04740 NC_022648.1 995644 996501 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate transporter complement(995644..996501) Escherichia coli JJ1886 17429773 YP_008720995.1 CDS P423_04745 NC_022648.1 996907 998667 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(996907..998667) Escherichia coli JJ1886 17429774 YP_008720996.1 CDS P423_04750 NC_022648.1 998797 999489 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 998797..999489 Escherichia coli JJ1886 17429775 YP_008720997.1 CDS P423_04755 NC_022648.1 999688 1000776 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; catalyzes 4 phosphohydroxy L-threonine from 2-oxo 3 hydroxy 4- phosphobutanoate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoserine/phosphohydroxythreonine aminotransferase 999688..1000776 Escherichia coli JJ1886 17429776 YP_008720998.1 CDS P423_04760 NC_022648.1 1000847 1002130 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoshikimate 1-carboxyvinyltransferase 1000847..1002130 Escherichia coli JJ1886 17429777 YP_008720999.1 CDS P423_04765 NC_022648.1 1002386 1002958 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA invertase complement(1002386..1002958) Escherichia coli JJ1886 17429778 YP_008721000.1 CDS P423_04770 NC_022648.1 1003282 1003542 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1003282..1003542 Escherichia coli JJ1886 17429779 YP_008721001.1 CDS P423_04775 NC_022648.1 1003542 1004156 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail assembly protein 1003542..1004156 Escherichia coli JJ1886 17429780 YP_008721002.1 CDS P423_04780 NC_022648.1 1004163 1004606 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail fiber protein complement(1004163..1004606) Escherichia coli JJ1886 17429781 YP_008721003.1 CDS P423_04785 NC_022648.1 1004635 1005882 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein complement(1004635..1005882) Escherichia coli JJ1886 17429782 YP_008721004.1 CDS P423_04790 NC_022648.1 1005885 1006463 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail fiber protein complement(1005885..1006463) Escherichia coli JJ1886 17429783 YP_008721005.1 CDS P423_04795 NC_022648.1 1006456 1007559 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate protein complement(1006456..1007559) Escherichia coli JJ1886 17429784 YP_008721006.1 CDS P423_04800 NC_022648.1 1007550 1007897 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate protein complement(1007550..1007897) Escherichia coli JJ1886 17429785 YP_008721007.1 CDS P423_04805 NC_022648.1 1007952 1008548 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate protein complement(1007952..1008548) Escherichia coli JJ1886 17429786 YP_008721008.1 CDS P423_04810 NC_022648.1 1008545 1009699 R Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(1008545..1009699) Escherichia coli JJ1886 17429787 YP_008721009.1 CDS P423_04815 NC_022648.1 1009687 1009899 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1009687..1009899) Escherichia coli JJ1886 17429788 YP_008721010.1 CDS P423_04820 NC_022648.1 1009899 1010783 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1009899..1010783) Escherichia coli JJ1886 17429789 YP_008721011.1 CDS P423_04825 NC_022648.1 1010783 1013734 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein complement(1010783..1013734) Escherichia coli JJ1886 17429790 YP_008721012.1 CDS P423_04830 NC_022648.1 1013892 1014227 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1013892..1014227) Escherichia coli JJ1886 17429791 YP_008721013.1 CDS P423_04835 NC_022648.1 1014325 1014606 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1014325..1014606) Escherichia coli JJ1886 17429792 YP_008721014.1 CDS P423_04840 NC_022648.1 1014609 1015130 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(1014609..1015130) Escherichia coli JJ1886 17429793 YP_008721015.1 CDS P423_04845 NC_022648.1 1015130 1016557 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(1015130..1016557) Escherichia coli JJ1886 17429794 YP_008721016.1 CDS P423_04850 NC_022648.1 1016547 1016798 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1016547..1016798) Escherichia coli JJ1886 17429795 YP_008721017.1 CDS P423_04855 NC_022648.1 1016798 1017262 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1016798..1017262) Escherichia coli JJ1886 17429796 YP_008721018.1 CDS P423_04860 NC_022648.1 1017262 1017708 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1017262..1017708) Escherichia coli JJ1886 17429797 YP_008721019.1 CDS P423_04865 NC_022648.1 1017710 1018048 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1017710..1018048) Escherichia coli JJ1886 17429798 YP_008721020.1 CDS P423_04870 NC_022648.1 1018058 1019011 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1018058..1019011) Escherichia coli JJ1886 17429799 YP_008721021.1 CDS P423_04875 NC_022648.1 1019026 1020141 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase complement(1019026..1020141) Escherichia coli JJ1886 17429800 YP_008721022.1 CDS P423_04880 NC_022648.1 1020356 1020814 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phage morphogeneis protein complement(1020356..1020814) Escherichia coli JJ1886 17429801 YP_008721023.1 CDS P423_04885 NC_022648.1 1020817 1021638 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phage head morphogenesis protein complement(1020817..1021638) Escherichia coli JJ1886 17429802 YP_008721024.1 CDS P423_04890 NC_022648.1 1021619 1023115 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1021619..1023115) Escherichia coli JJ1886 17429803 YP_008721025.1 CDS P423_04895 NC_022648.1 1023115 1024710 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1023115..1024710) Escherichia coli JJ1886 17429804 YP_008721026.1 CDS P423_04900 NC_022648.1 1024707 1025252 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1024707..1025252) Escherichia coli JJ1886 17429805 YP_008721027.1 CDS P423_04905 NC_022648.1 1025252 1025563 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1025252..1025563) Escherichia coli JJ1886 17429806 YP_008721028.1 CDS P423_04910 NC_022648.1 1025563 1025889 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1025563..1025889) Escherichia coli JJ1886 17429807 YP_008721029.1 CDS P423_04915 NC_022648.1 1025886 1026536 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1025886..1026536) Escherichia coli JJ1886 17429808 YP_008721030.1 CDS P423_04920 NC_022648.1 1026520 1027260 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme complement(1026520..1027260) Escherichia coli JJ1886 17429809 YP_008721031.1 CDS P423_04925 NC_022648.1 1027263 1027613 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1027263..1027613) Escherichia coli JJ1886 17429810 YP_008721032.1 CDS P423_04930 NC_022648.1 1027744 1027875 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1027744..1027875 Escherichia coli JJ1886 17429811 YP_008721033.1 CDS P423_04935 NC_022648.1 1027862 1029433 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS66 complement(1027862..1029433) Escherichia coli JJ1886 17429812 YP_008721034.1 CDS P423_04940 NC_022648.1 1029506 1029856 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase complement(1029506..1029856) Escherichia coli JJ1886 17429813 YP_008721035.1 CDS P423_04945 NC_022648.1 1029853 1030278 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(1029853..1030278) Escherichia coli JJ1886 17429814 YP_008721036.1 CDS P423_04950 NC_022648.1 1030390 1031025 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1030390..1031025 Escherichia coli JJ1886 17429815 YP_008721037.1 CDS P423_04955 NC_022648.1 1031001 1031405 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1031001..1031405) Escherichia coli JJ1886 17429816 YP_008721038.1 CDS P423_04960 NC_022648.1 1031404 1031619 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1031404..1031619 Escherichia coli JJ1886 17429817 YP_008721039.1 CDS P423_04965 NC_022648.1 1031810 1032574 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA methyltransferase 1031810..1032574 Escherichia coli JJ1886 17429818 YP_008721040.1 CDS P423_04970 NC_022648.1 1032691 1033047 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein complement(1032691..1033047) Escherichia coli JJ1886 17429819 YP_008721041.1 CDS P423_04975 NC_022648.1 1033141 1033329 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1033141..1033329 Escherichia coli JJ1886 17429820 YP_008721042.1 CDS P423_04980 NC_022648.1 1033382 1033690 D Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator 1033382..1033690 Escherichia coli JJ1886 17429821 YP_008721043.1 CDS P423_04985 NC_022648.1 1033701 1034621 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1033701..1034621 Escherichia coli JJ1886 17429822 YP_008721044.1 CDS P423_04990 NC_022648.1 1034621 1034938 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1034621..1034938 Escherichia coli JJ1886 17429823 YP_008721045.1 CDS P423_04995 NC_022648.1 1034954 1036723 D Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 1034954..1036723 Escherichia coli JJ1886 17429824 YP_008721046.1 CDS P423_05000 NC_022648.1 1036734 1037900 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase 1036734..1037900 Escherichia coli JJ1886 17429825 YP_008721047.1 CDS P423_05005 NC_022648.1 1037903 1038172 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1037903..1038172 Escherichia coli JJ1886 17429826 YP_008721048.1 CDS P423_05010 NC_022648.1 1038200 1038730 D Derived by automated computational analysis using gene prediction method: Protein Homology.; host-nuclease inhibitor protein Gam 1038200..1038730 Escherichia coli JJ1886 17429827 YP_008721049.1 CDS P423_05015 NC_022648.1 1038741 1038962 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1038741..1038962) Escherichia coli JJ1886 17429828 YP_008721050.1 CDS P423_05020 NC_022648.1 1039019 1039291 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1039019..1039291 Escherichia coli JJ1886 17429829 YP_008721051.1 CDS P423_05025 NC_022648.1 1039301 1039597 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1039301..1039597 Escherichia coli JJ1886 17429830 YP_008721052.1 CDS P423_05030 NC_022648.1 1039612 1039827 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1039612..1039827 Escherichia coli JJ1886 17429831 YP_008721053.1 CDS P423_05035 NC_022648.1 1039824 1040507 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1039824..1040507 Escherichia coli JJ1886 17429832 YP_008721054.1 CDS P423_05040 NC_022648.1 1040504 1040734 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1040504..1040734 Escherichia coli JJ1886 17429833 YP_008721055.1 CDS P423_05045 NC_022648.1 1040932 1041381 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Mu gp16 gemA 1040932..1041381 Escherichia coli JJ1886 17429834 YP_008721056.1 CDS P423_05050 NC_022648.1 1041353 1041742 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 1041353..1041742 Escherichia coli JJ1886 17429835 YP_008721057.1 CDS P423_05055 NC_022648.1 1041922 1042668 D Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloprotease 1041922..1042668 Escherichia coli JJ1886 17429836 YP_008721058.1 CDS cmk NC_022648.1 1042841 1043524 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytidylate kinase 1042841..1043524 Escherichia coli JJ1886 17429837 YP_008721059.1 CDS rpsA NC_022648.1 1043635 1045308 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S1 1043635..1045308 Escherichia coli JJ1886 17429838 YP_008721060.1 CDS ihfB NC_022648.1 1045468 1045752 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; Derived by automated computational analysis using gene prediction method: Protein Homology.; integration host factor subunit beta 1045468..1045752 Escherichia coli JJ1886 17429839 YP_008721061.1 CDS P423_05075 NC_022648.1 1045958 1048222 D Derived by automated computational analysis using gene prediction method: Protein Homology.; competence protein ComEC 1045958..1048222 Escherichia coli JJ1886 17429840 YP_008721062.1 CDS P423_05080 NC_022648.1 1048259 1050007 D involved in the transport of lipid A across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein 1048259..1050007 Escherichia coli JJ1886 17429841 YP_008721063.1 CDS lpxK NC_022648.1 1050004 1050990 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tetraacyldisaccharide 4'-kinase 1050004..1050990 Escherichia coli JJ1886 17429842 YP_008721064.1 CDS P423_05090 NC_022648.1 1051027 1052259 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1051027..1052259 Escherichia coli JJ1886 17429843 YP_008721065.1 CDS P423_05095 NC_022648.1 1052311 1052493 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1052311..1052493 Escherichia coli JJ1886 17429844 YP_008721066.1 CDS P423_05100 NC_022648.1 1052490 1053236 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-manno-octulosonate cytidylyltransferase 1052490..1053236 Escherichia coli JJ1886 17429845 YP_008721067.1 CDS P423_05105 NC_022648.1 1053390 1054283 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1053390..1054283 Escherichia coli JJ1886 17429846 YP_008721068.1 CDS P423_05110 NC_022648.1 1054260 1055039 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1054260..1055039) Escherichia coli JJ1886 17429847 YP_008721069.1 CDS P423_05115 NC_022648.1 1055175 1055960 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosyl-L-methionine-dependent methyltransferase 1055175..1055960 Escherichia coli JJ1886 17429848 YP_008721070.1 CDS P423_05120 NC_022648.1 1055957 1057279 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; condesin subunit F 1055957..1057279 Escherichia coli JJ1886 17429849 YP_008721071.1 CDS P423_05125 NC_022648.1 1057260 1057964 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; condesin subunit E 1057260..1057964 Escherichia coli JJ1886 17429850 YP_008721072.1 CDS mukB NC_022648.1 1057964 1062424 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein MukB 1057964..1062424 Escherichia coli JJ1886 17429851 YP_008721073.1 CDS P423_05135 NC_022648.1 1062685 1064532 D catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein L,D-transpeptidase 1062685..1064532 Escherichia coli JJ1886 17429852 YP_008721074.1 CDS P423_05140 NC_022648.1 1064704 1065261 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1064704..1065261 Escherichia coli JJ1886 17429853 YP_008721075.1 CDS P423_05145 NC_022648.1 1065288 1065935 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1065288..1065935 Escherichia coli JJ1886 17429854 YP_008721076.1 CDS P423_05150 NC_022648.1 1065985 1067175 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid aminotransferase complement(1065985..1067175) Escherichia coli JJ1886 17429855 YP_008721077.1 CDS P423_05155 NC_022648.1 1067174 1067344 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1067174..1067344 Escherichia coli JJ1886 17429856 YP_008721078.1 CDS P423_05160 NC_022648.1 1067360 1068448 R Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane phosphoporin protein E complement(1067360..1068448) Escherichia coli JJ1886 17429857 YP_008721079.1 CDS P423_05165 NC_022648.1 1069051 1070451 R Derived by automated computational analysis using gene prediction method: Protein Homology.; asparaginyl-tRNA synthetase complement(1069051..1070451) Escherichia coli JJ1886 17429858 YP_008721080.1 CDS P423_05170 NC_022648.1 1070620 1071822 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate phosphoribosyltransferase complement(1070620..1071822) Escherichia coli JJ1886 17429859 YP_008721081.1 CDS pepN NC_022648.1 1072088 1074700 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase N 1072088..1074700 Escherichia coli JJ1886 17429860 YP_008721082.1 CDS tauB NC_022648.1 1074743 1075510 R Part of the ABC transporter complex tauABC involved in taurine import; Derived by automated computational analysis using gene prediction method: Protein Homology.; taurine ABC transporter ATP-binding protein complement(1074743..1075510) Escherichia coli JJ1886 17429861 YP_008721083.1 CDS ssuC NC_022648.1 1075507 1076298 R part of the ABC type transport system for alkanesulfonate SsuABC; SsuB the ATP-binding subunit and SsuC the permease; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfonate ABC transporter complement(1075507..1076298) Escherichia coli JJ1886 17429862 YP_008721084.1 CDS P423_05190 NC_022648.1 1076310 1077455 R catalyzes the release of sulfite from alkanesulfonates; Derived by automated computational analysis using gene prediction method: Protein Homology.; alkanesulfonate monooxygenase complement(1076310..1077455) Escherichia coli JJ1886 17429863 YP_008721085.1 CDS P423_05195 NC_022648.1 1077452 1078411 R part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic subunit SsuB the ATP-binding subunit and SsuC the permease; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfonate ABC transporter substrate-binding protein complement(1077452..1078411) Escherichia coli JJ1886 17429864 YP_008721086.1 CDS P423_05200 NC_022648.1 1078404 1078979 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-dependent FMN reductase complement(1078404..1078979) Escherichia coli JJ1886 17429865 YP_008721087.1 CDS P423_05205 NC_022648.1 1079216 1080226 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotate dehydrogenase 1079216..1080226 Escherichia coli JJ1886 17429866 YP_008721088.1 CDS P423_05210 NC_022648.1 1080400 1080942 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein ZapC 1080400..1080942 Escherichia coli JJ1886 17429867 YP_008721089.1 CDS P423_05215 NC_022648.1 1080939 1082048 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1080939..1082048) Escherichia coli JJ1886 17429868 YP_008721090.1 CDS rlmL NC_022648.1 1082146 1084254 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 1082146..1084254 Escherichia coli JJ1886 17429869 YP_008721091.1 CDS P423_05225 NC_022648.1 1084266 1086173 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATPase 1084266..1086173 Escherichia coli JJ1886 17429870 YP_008721092.1 CDS P423_05230 NC_022648.1 1086303 1087556 D Derived by automated computational analysis using gene prediction method: Protein Homology.; paraquat-inducible protein A 1086303..1087556 Escherichia coli JJ1886 17429871 YP_008721093.1 CDS P423_05235 NC_022648.1 1087561 1089201 D Derived by automated computational analysis using gene prediction method: Protein Homology.; paraquat-inducible protein B 1087561..1089201 Escherichia coli JJ1886 17429872 YP_008721094.1 CDS P423_05240 NC_022648.1 1089198 1089761 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1089198..1089761 Escherichia coli JJ1886 17429873 YP_008721095.1 CDS P423_05245 NC_022648.1 1090017 1090184 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome modulation factor 1090017..1090184 Escherichia coli JJ1886 17429874 YP_008721096.1 CDS P423_05250 NC_022648.1 1090254 1090880 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxydecanoyl-ACP dehydratase complement(1090254..1090880) Escherichia coli JJ1886 17429875 YP_008721097.1 CDS P423_05255 NC_022648.1 1090841 1092601 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Lon protease complement(1090841..1092601) Escherichia coli JJ1886 17429876 YP_008721098.1 CDS P423_05260 NC_022648.1 1092787 1093239 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Ter macrodomain organizer matS-binding protein 1092787..1093239 Escherichia coli JJ1886 17429877 YP_008721099.1 CDS P423_05265 NC_022648.1 1093315 1094424 R OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1093315..1094424) Escherichia coli JJ1886 17429878 YP_008721100.1 CDS P423_05270 NC_022648.1 1094723 1095232 R Derived by automated computational analysis using gene prediction method: Protein Homology.; SOS cell division inhibitor complement(1094723..1095232) Escherichia coli JJ1886 17429879 YP_008721101.1 CDS P423_05275 NC_022648.1 1095451 1096080 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator 1095451..1096080 Escherichia coli JJ1886 17429880 YP_008721102.1 CDS P423_05280 NC_022648.1 1096043 1098205 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1096043..1098205) Escherichia coli JJ1886 17429881 YP_008721103.1 CDS P423_05285 NC_022648.1 1098215 1098661 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1098215..1098661) Escherichia coli JJ1886 17429882 YP_008721104.1 CDS helD NC_022648.1 1098784 1100838 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA helicase IV 1098784..1100838 Escherichia coli JJ1886 17429883 YP_008721105.1 CDS mgsA NC_022648.1 1100870 1101328 R catalyzes the formation of methylglyoxal from glycerone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; methylglyoxal synthase complement(1100870..1101328) Escherichia coli JJ1886 17429884 YP_008721106.1 CDS P423_05300 NC_022648.1 1101424 1102086 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1101424..1102086) Escherichia coli JJ1886 17429885 YP_008721107.1 CDS P423_05305 NC_022648.1 1102259 1102672 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1102259..1102672 Escherichia coli JJ1886 17429886 YP_008721108.1 CDS P423_05310 NC_022648.1 1102717 1103034 R Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein HspQ complement(1102717..1103034) Escherichia coli JJ1886 17429887 YP_008721109.1 CDS P423_05315 NC_022648.1 1103092 1104282 R SAM-dependent;catalyzes the methylation of cytosine at position 1962 of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(1103092..1104282) Escherichia coli JJ1886 17429888 YP_008721110.1 CDS P423_05320 NC_022648.1 1104377 1104655 D catalyzes the hydrolysis of acylphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; acylphosphatase 1104377..1104655 Escherichia coli JJ1886 17429889 YP_008721111.1 CDS P423_05325 NC_022648.1 1104652 1104981 R transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer protein TusE complement(1104652..1104981) Escherichia coli JJ1886 17429890 YP_008721112.1 CDS P423_05330 NC_022648.1 1105073 1105732 R binds to the HflBKC complex which modulates FtsH activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; HflBKC-binding inner membrane protein complement(1105073..1105732) Escherichia coli JJ1886 17429891 YP_008721113.1 CDS P423_05340 NC_022648.1 1106456 1107574 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1106456..1107574 Escherichia coli JJ1886 17429893 YP_008721114.1 CDS P423_05345 NC_022648.1 1107571 1109364 D involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 large subunit 1107571..1109364 Escherichia coli JJ1886 17429894 YP_008721115.1 CDS P423_05350 NC_022648.1 1109383 1110090 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 b-type cytochrome subunit 1109383..1110090 Escherichia coli JJ1886 17429895 YP_008721116.1 CDS P423_05355 NC_022648.1 1110087 1110674 D HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 maturation protease 1110087..1110674 Escherichia coli JJ1886 17429896 YP_008721117.1 CDS P423_05360 NC_022648.1 1110671 1111069 D involved in processing hydrogenase proteins HyaA and HyaB; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase-1 operon protein HyaE 1110671..1111069 Escherichia coli JJ1886 17429897 YP_008721118.1 CDS P423_05365 NC_022648.1 1111066 1111923 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase-1 operon protein HyaF 1111066..1111923 Escherichia coli JJ1886 17429898 YP_008721119.1 CDS P423_05370 NC_022648.1 1112057 1113601 D part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit I 1112057..1113601 Escherichia coli JJ1886 17429899 YP_008721120.1 CDS P423_05375 NC_022648.1 1113613 1114749 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit II 1113613..1114749 Escherichia coli JJ1886 17429900 YP_008721121.1 CDS P423_05380 NC_022648.1 1114904 1116244 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoanhydride phosphorylase 1114904..1116244 Escherichia coli JJ1886 17429901 YP_008721122.1 CDS P423_05385 NC_022648.1 1116232 1116444 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein complement(1116232..1116444) Escherichia coli JJ1886 17429902 YP_008721123.1 CDS P423_05390 NC_022648.1 1116730 1116942 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein 1116730..1116942 Escherichia coli JJ1886 17429903 YP_008721124.1 CDS P423_05395 NC_022648.1 1117116 1117346 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein 1117116..1117346 Escherichia coli JJ1886 17429904 YP_008721125.1 CDS P423_05400 NC_022648.1 1117336 1117509 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gns 1117336..1117509 Escherichia coli JJ1886 17429905 YP_008721126.1 CDS P423_05405 NC_022648.1 1117558 1118631 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter YccM complement(1117558..1118631) Escherichia coli JJ1886 17429906 YP_008721127.1 CDS P423_05415 NC_022648.1 1121529 1122557 D periplasmic sensory protein associated with the TorRS two-component regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology.; TMAO reductase 1121529..1122557 Escherichia coli JJ1886 17429908 YP_008721128.1 CDS P423_05420 NC_022648.1 1122530 1123222 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY complement(1122530..1123222) Escherichia coli JJ1886 17429909 YP_008721129.1 CDS P423_05425 NC_022648.1 1123352 1124524 D with TorA forms the inducible trimethylamine N-oxide reductase which transfers electrons from menaquinones first to TorC then to TorA; Derived by automated computational analysis using gene prediction method: Protein Homology.; trimethylamine N-oxide reductase cytochrome C subunit 1123352..1124524 Escherichia coli JJ1886 17429910 YP_008721130.1 CDS P423_05430 NC_022648.1 1124524 1127070 D catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; trimethylamine N-oxide reductase I catalytic subunit 1124524..1127070 Escherichia coli JJ1886 17429911 YP_008721131.1 CDS torD NC_022648.1 1127067 1127666 D TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein TorD 1127067..1127666 Escherichia coli JJ1886 17429912 YP_008721132.1 CDS P423_05440 NC_022648.1 1127921 1128226 R with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone-modulator protein CbpM complement(1127921..1128226) Escherichia coli JJ1886 17429913 YP_008721133.1 CDS P423_05445 NC_022648.1 1128226 1129146 R functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(1128226..1129146) Escherichia coli JJ1886 17429914 YP_008721134.1 CDS P423_05450 NC_022648.1 1129681 1130922 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphatase/inositol phosphatase 1129681..1130922 Escherichia coli JJ1886 17429915 YP_008721135.1 CDS P423_05455 NC_022648.1 1130960 1131187 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1130960..1131187) Escherichia coli JJ1886 17429916 YP_008721136.1 CDS P423_05460 NC_022648.1 1131208 1131804 R catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H:quinone oxidoreductase complement(1131208..1131804) Escherichia coli JJ1886 17429917 YP_008721137.1 CDS P423_05465 NC_022648.1 1132177 1132350 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1132177..1132350 Escherichia coli JJ1886 17429918 YP_008721138.1 CDS P423_05470 NC_022648.1 1132433 1133761 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrimidine permease complement(1132433..1133761) Escherichia coli JJ1886 17429919 YP_008721139.1 CDS P423_05475 NC_022648.1 1133782 1134276 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN reductase complement(1133782..1134276) Escherichia coli JJ1886 17429920 YP_008721140.1 CDS P423_05480 NC_022648.1 1134287 1134877 R Derived by automated computational analysis using gene prediction method: Protein Homology.; malonic semialdehyde reductase complement(1134287..1134877) Escherichia coli JJ1886 17429921 YP_008721141.1 CDS P423_05485 NC_022648.1 1134887 1135687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoacrylate hydrolase complement(1134887..1135687) Escherichia coli JJ1886 17429922 YP_008721142.1 CDS P423_05490 NC_022648.1 1135695 1136081 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoacrylate peracid reductase complement(1135695..1136081) Escherichia coli JJ1886 17429923 YP_008721143.1 CDS P423_05495 NC_022648.1 1136093 1136788 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amidohydrolase complement(1136093..1136788) Escherichia coli JJ1886 17429924 YP_008721144.1 CDS P423_05500 NC_022648.1 1136785 1137879 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrimidine monooxygenase complement(1136785..1137879) Escherichia coli JJ1886 17429925 YP_008721145.1 CDS P423_05505 NC_022648.1 1138164 1138802 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1138164..1138802 Escherichia coli JJ1886 17429926 YP_008721146.1 CDS putA NC_022648.1 1138842 1142804 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1138842..1142804) Escherichia coli JJ1886 17429927 YP_008721147.1 CDS P423_05515 NC_022648.1 1142859 1143068 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1142859..1143068 Escherichia coli JJ1886 17429928 YP_008721148.1 CDS P423_05520 NC_022648.1 1143227 1144735 D involved in the sodium dependent uptake of proline; Derived by automated computational analysis using gene prediction method: Protein Homology.; proline:sodium symporter 1143227..1144735 Escherichia coli JJ1886 17429929 YP_008721149.1 CDS P423_05525 NC_022648.1 1144955 1145785 D Derived by automated computational analysis using gene prediction method: Protein Homology.; iron permease 1144955..1145785 Escherichia coli JJ1886 17429930 YP_008721150.1 CDS P423_05530 NC_022648.1 1145843 1146970 D with EfeUB forms an iron transport system which is silent in E. coli K-12 due to a mutation in EfeU; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter substrate-binding protein 1145843..1146970 Escherichia coli JJ1886 17429931 YP_008721151.1 CDS P423_05535 NC_022648.1 1146976 1148247 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxidase 1146976..1148247 Escherichia coli JJ1886 17429932 YP_008721152.1 CDS P423_05540 NC_022648.1 1148598 1149662 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate hydrolase 1148598..1149662 Escherichia coli JJ1886 17429933 YP_008721153.1 CDS pgaD NC_022648.1 1149712 1150125 R in Yersinia this gene is involved in biofilm formation and hemin adsorption; in Escherichia coli it is involved in PGA biosynthesis and export; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease complement(1149712..1150125) Escherichia coli JJ1886 17429934 YP_008721154.1 CDS P423_05550 NC_022648.1 1150127 1151452 R predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-glycosyltransferase complement(1150127..1151452) Escherichia coli JJ1886 17429935 YP_008721155.1 CDS pgaB NC_022648.1 1151445 1153463 R in Yersinia this protein is involved in biofilm formation and hemin adsorption; related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1,6-N-acetyl-D-glucosamine (PGA) export; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane N-deacetylase complement(1151445..1153463) Escherichia coli JJ1886 17429936 YP_008721156.1 CDS pgaA NC_022648.1 1153472 1155895 R outer membrane protein essential for the synthesis of poly-beta-1,6-N-acetyl-D-glucosamine (PGA); adhesin required for biofilm formation; PgaA (HmsH) seems to translocate and/or dock PGA to the cell surface; member of the hmsHFRS (ycdSRQP or pgaABCD in Escherichia coli) operon in Yersinia; Derived by automated computational analysis using gene prediction method: Protein Homology.; poly-beta-1,6-N-acetyl-D-glucosamine export protein complement(1153472..1155895) Escherichia coli JJ1886 17429937 YP_008721157.1 CDS P423_05565 NC_022648.1 1156481 1157848 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1156481..1157848 Escherichia coli JJ1886 17429938 YP_008721158.1 CDS P423_05570 NC_022648.1 1157845 1157949 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1157845..1157949 Escherichia coli JJ1886 17429939 YP_008721159.1 CDS ghrA NC_022648.1 1158274 1159212 D catalyzes the formation of glycolate and glycerate from glyoxylate and hydroxypyruvate, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glyoxylate/hydroxypyruvate reductase A 1158274..1159212 Escherichia coli JJ1886 17429941 YP_008721160.1 CDS P423_05585 NC_022648.1 1159267 1160004 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 1159267..1160004 Escherichia coli JJ1886 17429942 YP_008721161.1 CDS P423_05590 NC_022648.1 1160028 1160582 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone 1160028..1160582 Escherichia coli JJ1886 17429943 YP_008721162.1 CDS P423_05595 NC_022648.1 1160654 1161175 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1160654..1161175 Escherichia coli JJ1886 17429944 YP_008721163.1 CDS P423_05600 NC_022648.1 1161240 1162073 R involved in the stability of the curlin proteins during assembly; involved in the secretion of the major curlin subunit CsgA across the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(1161240..1162073) Escherichia coli JJ1886 17429945 YP_008721164.1 CDS P423_05605 NC_022648.1 1162100 1162516 R nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; curli assembly protein CsgF complement(1162100..1162516) Escherichia coli JJ1886 17429946 YP_008721165.1 CDS P423_05610 NC_022648.1 1162541 1162930 R chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; curli assembly protein CsgE complement(1162541..1162930) Escherichia coli JJ1886 17429947 YP_008721166.1 CDS P423_05615 NC_022648.1 1162935 1163585 R activates the csgBA and csgDEFG operons involved in biofilm formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1162935..1163585) Escherichia coli JJ1886 17429948 YP_008721167.1 CDS csgB NC_022648.1 1164338 1164793 D CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; Derived by automated computational analysis using gene prediction method: Protein Homology.; curlin 1164338..1164793 Escherichia coli JJ1886 17429949 YP_008721168.1 CDS csgA NC_022648.1 1164834 1165292 D the major structural subunit of curlin which assemble to form curli which can bind to fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.; major curlin subunit 1164834..1165292 Escherichia coli JJ1886 17429950 YP_008721169.1 CDS csgC NC_022648.1 1165352 1165684 D involved in autoagglutination of curliated cells; not involved in production of curli fibers; Derived by automated computational analysis using gene prediction method: Protein Homology.; curli assembly protein CsgC 1165352..1165684 Escherichia coli JJ1886 17429951 YP_008721170.1 CDS P423_05635 NC_022648.1 1165805 1166116 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1165805..1166116 Escherichia coli JJ1886 17429952 YP_008721171.1 CDS P423_05640 NC_022648.1 1166211 1166744 D interacts and inactivates RNase III during cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNase III inhibitor 1166211..1166744 Escherichia coli JJ1886 17429953 YP_008721172.1 CDS P423_05645 NC_022648.1 1166737 1168167 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1166737..1168167 Escherichia coli JJ1886 17429954 YP_008721173.1 CDS opgC NC_022648.1 1168175 1169332 R required for the transfer of succinyl residues to osmoregulated periplasmic glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein complement(1168175..1169332) Escherichia coli JJ1886 17429955 YP_008721174.1 CDS mdoG NC_022648.1 1169708 1171261 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein D 1169708..1171261 Escherichia coli JJ1886 17429956 YP_008721175.1 CDS P423_05660 NC_022648.1 1171254 1173797 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosyltransferase 1171254..1173797 Escherichia coli JJ1886 17429957 YP_008721176.1 CDS P423_05665 NC_022648.1 1173969 1174196 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 1173969..1174196 Escherichia coli JJ1886 17433822 YP_008721177.1 CDS P423_05670 NC_022648.1 1174197 1174571 R Derived by automated computational analysis using gene prediction method: Protein Homology.; SecY/SecA suppressor protein complement(1174197..1174571) Escherichia coli JJ1886 17429959 YP_008721178.1 CDS P423_05675 NC_022648.1 1174654 1175880 R Confers resistance to fosfomycin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(1174654..1175880) Escherichia coli JJ1886 17429960 YP_008721179.1 CDS P423_05680 NC_022648.1 1176052 1176972 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis lauroyl acyltransferase complement(1176052..1176972) Escherichia coli JJ1886 17429961 YP_008721180.1 CDS P423_05685 NC_022648.1 1177197 1178249 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfurtransferase 1177197..1178249 Escherichia coli JJ1886 17429962 YP_008721181.1 CDS P423_05690 NC_022648.1 1178291 1178866 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1178291..1178866) Escherichia coli JJ1886 17429963 YP_008721182.1 CDS P423_05695 NC_022648.1 1178870 1179436 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome B561 complement(1178870..1179436) Escherichia coli JJ1886 17429964 YP_008721183.1 CDS P423_05700 NC_022648.1 1179426 1179572 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1179426..1179572 Escherichia coli JJ1886 17429965 YP_008721184.1 CDS P423_05705 NC_022648.1 1179697 1179837 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1179697..1179837) Escherichia coli JJ1886 17429966 YP_008721185.1 CDS solA NC_022648.1 1179858 1180976 R catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-methyltryptophan oxidase complement(1179858..1180976) Escherichia coli JJ1886 17429967 YP_008721186.1 CDS bssS NC_022648.1 1181091 1181345 R BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm formation regulatory protein BssS complement(1181091..1181345) Escherichia coli JJ1886 17429968 YP_008721187.1 CDS P423_05720 NC_022648.1 1181634 1181879 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA damage-inducible protein I complement(1181634..1181879) Escherichia coli JJ1886 17429969 YP_008721188.1 CDS P423_05725 NC_022648.1 1181956 1182999 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotase complement(1181956..1182999) Escherichia coli JJ1886 17429970 YP_008721189.1 CDS P423_05730 NC_022648.1 1183105 1183665 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(1183105..1183665) Escherichia coli JJ1886 17429971 YP_008721190.1 CDS P423_05735 NC_022648.1 1183798 1184445 R cofactor involved in the reduction of disulfides; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin complement(1183798..1184445) Escherichia coli JJ1886 17429972 YP_008721191.1 CDS P423_05740 NC_022648.1 1184509 1185717 R Confers resistance to norfloxacin and enoxacin; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein MdtH complement(1184509..1185717) Escherichia coli JJ1886 17429973 YP_008721192.1 CDS P423_05745 NC_022648.1 1185953 1186537 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine acetyltransferase 1185953..1186537 Escherichia coli JJ1886 17429974 YP_008721193.1 CDS P423_05750 NC_022648.1 1186548 1187195 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1186548..1187195 Escherichia coli JJ1886 17429975 YP_008721194.1 CDS P423_05755 NC_022648.1 1187197 1188120 D Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence factor MviM 1187197..1188120 Escherichia coli JJ1886 17429976 YP_008721195.1 CDS P423_05760 NC_022648.1 1188230 1189765 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1188230..1189765 Escherichia coli JJ1886 17429977 YP_008721196.1 CDS P423_05765 NC_022648.1 1189805 1190221 R export chaperone for FlgK and FlgL; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagella synthesis chaperone protein FlgN complement(1189805..1190221) Escherichia coli JJ1886 17429978 YP_008721197.1 CDS P423_05770 NC_022648.1 1190226 1190519 R regulates the flagellar specific sigma28 transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-sigma28 factor FlgM complement(1190226..1190519) Escherichia coli JJ1886 17429979 YP_008721198.1 CDS flgA NC_022648.1 1190595 1191254 R required for the assembly of the flagellar basal body P-ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring biosynthesis protein FlgA complement(1190595..1191254) Escherichia coli JJ1886 17429980 YP_008721199.1 CDS flgB NC_022648.1 1191409 1191825 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgB 1191409..1191825 Escherichia coli JJ1886 17429981 YP_008721200.1 CDS flgC NC_022648.1 1191829 1192233 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgC 1191829..1192233 Escherichia coli JJ1886 17429982 YP_008721201.1 CDS flgD NC_022648.1 1192245 1192940 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod modification protein 1192245..1192940 Escherichia coli JJ1886 17429983 YP_008721202.1 CDS flgE NC_022648.1 1192965 1194170 D the hook connects flagellar basal body to the flagellar filament; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook protein FlgE 1192965..1194170 Escherichia coli JJ1886 17429984 YP_008721203.1 CDS flgF NC_022648.1 1194190 1194945 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgF 1194190..1194945 Escherichia coli JJ1886 17429985 YP_008721204.1 CDS flgG NC_022648.1 1195117 1195899 D makes up the distal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgG 1195117..1195899 Escherichia coli JJ1886 17429986 YP_008721205.1 CDS flgH NC_022648.1 1195953 1196651 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body L-ring protein 1195953..1196651 Escherichia coli JJ1886 17429987 YP_008721206.1 CDS flgI NC_022648.1 1196663 1197760 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring protein 1196663..1197760 Escherichia coli JJ1886 17429988 YP_008721207.1 CDS flgJ NC_022648.1 1197760 1198701 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar rod assembly protein FlgJ 1197760..1198701 Escherichia coli JJ1886 17429989 YP_008721208.1 CDS flgK NC_022648.1 1198767 1200410 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-associated protein FlgK 1198767..1200410 Escherichia coli JJ1886 17429990 YP_008721209.1 CDS flgL NC_022648.1 1200422 1201375 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-associated protein FlgL 1200422..1201375 Escherichia coli JJ1886 17429991 YP_008721210.1 CDS rne NC_022648.1 1201570 1204755 R bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease E complement(1201570..1204755) Escherichia coli JJ1886 17429992 YP_008721211.1 CDS P423_05840 NC_022648.1 1204836 1205210 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1204836..1205210 Escherichia coli JJ1886 17429993 YP_008721212.1 CDS P423_05845 NC_022648.1 1205328 1206287 D catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridylate synthase C 1205328..1206287 Escherichia coli JJ1886 17429994 YP_008721213.1 CDS P423_05850 NC_022648.1 1206399 1207022 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; Maf complement(1206399..1207022) Escherichia coli JJ1886 17429995 YP_008721214.1 CDS P423_05855 NC_022648.1 1207182 1207703 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1207182..1207703 Escherichia coli JJ1886 17429996 YP_008721215.1 CDS rpmF NC_022648.1 1207755 1207928 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L32 1207755..1207928 Escherichia coli JJ1886 17429997 YP_008721216.1 CDS P423_05865 NC_022648.1 1208009 1209079 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate acyltransferase 1208009..1209079 Escherichia coli JJ1886 17429998 YP_008721217.1 CDS P423_05870 NC_022648.1 1209147 1210100 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase 1209147..1210100 Escherichia coli JJ1886 17429999 YP_008721218.1 CDS P423_05875 NC_022648.1 1210116 1211045 D Derived by automated computational analysis using gene prediction method: Protein Homology.; malonyl CoA-ACP transacylase 1210116..1211045 Escherichia coli JJ1886 17430000 YP_008721219.1 CDS fabG NC_022648.1 1211058 1211792 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-ACP reductase 1211058..1211792 Escherichia coli JJ1886 17430001 YP_008721220.1 CDS acpP NC_022648.1 1212003 1212239 D carries the fatty acid chain in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl carrier protein 1212003..1212239 Escherichia coli JJ1886 17430002 YP_008721221.1 CDS P423_05890 NC_022648.1 1212327 1213568 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase 1212327..1213568 Escherichia coli JJ1886 17430003 YP_008721222.1 CDS P423_05895 NC_022648.1 1213688 1214497 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxychorismate lyase 1213688..1214497 Escherichia coli JJ1886 17430004 YP_008721223.1 CDS P423_05900 NC_022648.1 1214500 1215522 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aminodeoxychorismate lyase 1214500..1215522 Escherichia coli JJ1886 17430005 YP_008721224.1 CDS P423_05905 NC_022648.1 1215512 1216153 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidylate kinase 1215512..1216153 Escherichia coli JJ1886 17430006 YP_008721225.1 CDS P423_05910 NC_022648.1 1216150 1217154 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit delta' 1216150..1217154 Escherichia coli JJ1886 17430007 YP_008721226.1 CDS P423_05915 NC_022648.1 1217165 1217962 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNAse 1217165..1217962 Escherichia coli JJ1886 17430008 YP_008721227.1 CDS P423_05920 NC_022648.1 1218257 1219690 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIBC 1218257..1219690 Escherichia coli JJ1886 17430009 YP_008721228.1 CDS P423_05925 NC_022648.1 1219750 1221939 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric-rhodotorulic acid outer membrane transporter complement(1219750..1221939) Escherichia coli JJ1886 17430010 YP_008721229.1 CDS P423_05930 NC_022648.1 1222273 1222632 D Derived by automated computational analysis using gene prediction method: Protein Homology.; purine nucleoside phosphoramidase 1222273..1222632 Escherichia coli JJ1886 17430011 YP_008721230.1 CDS P423_05935 NC_022648.1 1222635 1223012 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1222635..1223012 Escherichia coli JJ1886 17430012 YP_008721231.1 CDS P423_05940 NC_022648.1 1223026 1223667 D Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein activator LpoB 1223026..1223667 Escherichia coli JJ1886 17430013 YP_008721232.1 CDS thiK NC_022648.1 1223648 1224472 D catalyzes the phosphorylation of thiamine to thiamine phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine kinase 1223648..1224472 Escherichia coli JJ1886 17430014 YP_008721233.1 CDS P423_05950 NC_022648.1 1224483 1225508 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-hexosaminidase 1224483..1225508 Escherichia coli JJ1886 17430015 YP_008721234.1 CDS P423_05955 NC_022648.1 1225531 1226073 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1225531..1226073 Escherichia coli JJ1886 17430016 YP_008721235.1 CDS P423_05960 NC_022648.1 1226472 1227776 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase 1226472..1227776 Escherichia coli JJ1886 17430017 YP_008721236.1 CDS P423_05965 NC_022648.1 1228003 1228542 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1228003..1228542 Escherichia coli JJ1886 17430018 YP_008721237.1 CDS P423_05970 NC_022648.1 1228604 1229314 R Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator complement(1228604..1229314) Escherichia coli JJ1886 17430019 YP_008721238.1 CDS P423_05975 NC_022648.1 1229477 1229734 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multiple stress resistance protein BhsA 1229477..1229734 Escherichia coli JJ1886 17430020 YP_008721239.1 CDS P423_05980 NC_022648.1 1229817 1230779 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptigoglycan-binding protein LysM complement(1229817..1230779) Escherichia coli JJ1886 17430021 YP_008721240.1 CDS P423_05985 NC_022648.1 1230922 1234440 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription-repair coupling factor complement(1230922..1234440) Escherichia coli JJ1886 17430022 YP_008721241.1 CDS P423_05990 NC_022648.1 1234495 1235568 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1234495..1235568) Escherichia coli JJ1886 17430023 YP_008721242.1 CDS P423_05995 NC_022648.1 1235829 1237028 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1235829..1237028 Escherichia coli JJ1886 17430024 YP_008721243.1 CDS P423_06000 NC_022648.1 1237021 1237722 D ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsE 1237021..1237722 Escherichia coli JJ1886 17430025 YP_008721244.1 CDS P423_06005 NC_022648.1 1237722 1238966 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1237722..1238966 Escherichia coli JJ1886 17430026 YP_008721245.1 CDS P423_06010 NC_022648.1 1238995 1239906 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-D-glucosamine kinase 1238995..1239906 Escherichia coli JJ1886 17430027 YP_008721246.1 CDS P423_06015 NC_022648.1 1239922 1240743 D Modulates the activities of several enzymes which are inactive in their acetylated form; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent deacetylase 1239922..1240743 Escherichia coli JJ1886 17430028 YP_008721247.1 CDS P423_06020 NC_022648.1 1240881 1241669 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1240881..1241669) Escherichia coli JJ1886 17430029 YP_008721248.1 CDS P423_06025 NC_022648.1 1241666 1242127 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1241666..1242127) Escherichia coli JJ1886 17430030 YP_008721249.1 CDS potD NC_022648.1 1242185 1243231 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter substrate-binding protein complement(1242185..1243231) Escherichia coli JJ1886 17430031 YP_008721250.1 CDS potC NC_022648.1 1243228 1244022 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease complement(1243228..1244022) Escherichia coli JJ1886 17430032 YP_008721251.1 CDS potB NC_022648.1 1244019 1244876 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease complement(1244019..1244876) Escherichia coli JJ1886 17430033 YP_008721252.1 CDS potA NC_022648.1 1244860 1245996 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter ATPase complement(1244860..1245996) Escherichia coli JJ1886 17430034 YP_008721253.1 CDS P423_06050 NC_022648.1 1246246 1247472 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase T 1246246..1247472 Escherichia coli JJ1886 17430035 YP_008721254.1 CDS P423_06055 NC_022648.1 1247521 1248642 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1247521..1248642) Escherichia coli JJ1886 17430036 YP_008721255.1 CDS P423_06060 NC_022648.1 1248718 1250178 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein PhoQ complement(1248718..1250178) Escherichia coli JJ1886 17430037 YP_008721256.1 CDS P423_06065 NC_022648.1 1250178 1250849 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoP family transcriptional regulator complement(1250178..1250849) Escherichia coli JJ1886 17430038 YP_008721257.1 CDS P423_06070 NC_022648.1 1251018 1252388 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylosuccinate lyase complement(1251018..1252388) Escherichia coli JJ1886 17430039 YP_008721258.1 CDS P423_06075 NC_022648.1 1252392 1253039 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysogenization regulator complement(1252392..1253039) Escherichia coli JJ1886 17430040 YP_008721259.1 CDS mnmA NC_022648.1 1253069 1254175 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiouridylase complement(1253069..1254175) Escherichia coli JJ1886 17430041 YP_008721260.1 CDS P423_06085 NC_022648.1 1254229 1254690 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatase complement(1254229..1254690) Escherichia coli JJ1886 17430042 YP_008721261.1 CDS P423_06090 NC_022648.1 1254700 1255353 R catalyzes the formation of pseudouridine from uracil-2457 in 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridine synthase E complement(1254700..1255353) Escherichia coli JJ1886 17430043 YP_008721262.1 CDS P423_06095 NC_022648.1 1255525 1256775 D Converts isocitrate to alpha ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate dehydrogenase 1255525..1256775 Escherichia coli JJ1886 17430044 YP_008721263.1 CDS P423_06100 NC_022648.1 1256889 1258031 R Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase complement(1256889..1258031) Escherichia coli JJ1886 17430045 YP_008721264.1 CDS P423_06105 NC_022648.1 1258021 1258257 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; excisionase complement(1258021..1258257) Escherichia coli JJ1886 17430046 YP_008721265.1 CDS P423_06110 NC_022648.1 1258397 1258627 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1258397..1258627) Escherichia coli JJ1886 17430047 YP_008721266.1 CDS P423_06115 NC_022648.1 1258620 1258946 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding protein complement(1258620..1258946) Escherichia coli JJ1886 17430048 YP_008721267.1 CDS P423_06120 NC_022648.1 1258946 1259167 R Derived by automated computational analysis using gene prediction method: Protein Homology.; conjugal transfer protein TraR complement(1258946..1259167) Escherichia coli JJ1886 17430049 YP_008721268.1 CDS P423_06125 NC_022648.1 1259174 1259269 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1259174..1259269) Escherichia coli JJ1886 17430050 YP_008721269.1 CDS P423_06130 NC_022648.1 1259266 1259481 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1259266..1259481) Escherichia coli JJ1886 17430051 YP_008721270.1 CDS P423_06135 NC_022648.1 1259478 1259561 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1259478..1259561) Escherichia coli JJ1886 17430052 YP_008721271.1 CDS P423_06140 NC_022648.1 1259558 1259749 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1259558..1259749) Escherichia coli JJ1886 17430053 YP_008721272.1 CDS P423_06145 NC_022648.1 1259722 1259904 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cruciferin complement(1259722..1259904) Escherichia coli JJ1886 17430054 YP_008721273.1 CDS P423_06150 NC_022648.1 1259901 1260581 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; exonuclease complement(1259901..1260581) Escherichia coli JJ1886 17430055 YP_008721274.1 CDS P423_06155 NC_022648.1 1260578 1261363 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; recombinase complement(1260578..1261363) Escherichia coli JJ1886 17430056 YP_008721275.1 CDS P423_06160 NC_022648.1 1261369 1261665 R Derived by automated computational analysis using gene prediction method: Protein Homology.; host-nuclease inhibitor protein Gam complement(1261369..1261665) Escherichia coli JJ1886 17430057 YP_008721276.1 CDS P423_06165 NC_022648.1 1261741 1261947 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsZ complement(1261741..1261947) Escherichia coli JJ1886 17430058 YP_008721277.1 CDS P423_06170 NC_022648.1 1262543 1263298 R Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(1262543..1263298) Escherichia coli JJ1886 17430059 YP_008721278.1 CDS P423_06175 NC_022648.1 1263337 1263567 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antirepressor 1263337..1263567 Escherichia coli JJ1886 17430060 YP_008721279.1 CDS P423_06180 NC_022648.1 1263637 1264176 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; regulator 1263637..1264176 Escherichia coli JJ1886 17430061 YP_008721280.1 CDS P423_06185 NC_022648.1 1264173 1265192 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Replication protein O 1264173..1265192 Escherichia coli JJ1886 17430062 YP_008721281.1 CDS P423_06190 NC_022648.1 1265189 1265890 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Replication protein 14 1265189..1265890 Escherichia coli JJ1886 17430063 YP_008721282.1 CDS P423_06195 NC_022648.1 1266140 1270405 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1266140..1270405 Escherichia coli JJ1886 17430064 YP_008721283.1 CDS P423_06200 NC_022648.1 1270442 1271485 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Aes complement(1270442..1271485) Escherichia coli JJ1886 17430065 YP_008721284.1 CDS P423_06205 NC_022648.1 1271933 1272388 D DLP12 prophage; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1271933..1272388 Escherichia coli JJ1886 17430066 YP_008721285.1 CDS P423_06210 NC_022648.1 1272388 1272558 D DLP12 prophage; conserved protein similar to phage 82 and lambda proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1272388..1272558 Escherichia coli JJ1886 17430067 YP_008721286.1 CDS P423_06215 NC_022648.1 1272551 1272841 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1272551..1272841 Escherichia coli JJ1886 17430068 YP_008721287.1 CDS P423_06220 NC_022648.1 1272838 1273200 D Derived by automated computational analysis using gene prediction method: Protein Homology.; crossover junction endodeoxyribonuclease RusA 1272838..1273200 Escherichia coli JJ1886 17430069 YP_008721288.1 CDS P423_06225 NC_022648.1 1273197 1273337 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1273197..1273337 Escherichia coli JJ1886 17430070 YP_008721289.1 CDS P423_06230 NC_022648.1 1273334 1274023 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1273334..1274023 Escherichia coli JJ1886 17430071 YP_008721290.1 CDS P423_06235 NC_022648.1 1274345 1274650 D Derived by automated computational analysis using gene prediction method: Protein Homology.; holin 1274345..1274650 Escherichia coli JJ1886 17430072 YP_008721291.1 CDS P423_06240 NC_022648.1 1274637 1275113 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme 1274637..1275113 Escherichia coli JJ1886 17430073 YP_008721292.1 CDS P423_06245 NC_022648.1 1275110 1275571 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 1275110..1275571 Escherichia coli JJ1886 17430074 YP_008721293.1 CDS P423_06250 NC_022648.1 1275603 1275896 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1275603..1275896) Escherichia coli JJ1886 17430075 YP_008721294.1 CDS P423_06255 NC_022648.1 1276323 1276703 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cell envelope biogenesis protein TonB 1276323..1276703 Escherichia coli JJ1886 17430076 YP_008721295.1 CDS P423_06260 NC_022648.1 1276910 1277092 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1276910..1277092 Escherichia coli JJ1886 17430077 YP_008721296.1 CDS P423_06265 NC_022648.1 1277656 1278201 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protein convertase 1277656..1278201 Escherichia coli JJ1886 17430078 YP_008721297.1 CDS P423_06270 NC_022648.1 1278176 1280101 D Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase 1278176..1280101 Escherichia coli JJ1886 17430079 YP_008721298.1 CDS P423_06275 NC_022648.1 1280098 1280304 D Derived by automated computational analysis using gene prediction method: Protein Homology.; head-tail joining protein 1280098..1280304 Escherichia coli JJ1886 17430080 YP_008721299.1 CDS P423_06280 NC_022648.1 1280301 1281902 D Derived by automated computational analysis using gene prediction method: Protein Homology.; plasmid partitioning protein ParB 1280301..1281902 Escherichia coli JJ1886 17430081 YP_008721300.1 CDS P423_06285 NC_022648.1 1281883 1283202 D Derived by automated computational analysis using gene prediction method: Protein Homology.; capsid assembly protein 1281883..1283202 Escherichia coli JJ1886 17430082 YP_008721301.1 CDS P423_06290 NC_022648.1 1283600 1284625 D Derived by automated computational analysis using gene prediction method: Protein Homology.; head protein 1283600..1284625 Escherichia coli JJ1886 17430083 YP_008721302.1 CDS P423_06295 NC_022648.1 1284667 1285065 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-packaging protein FI 1284667..1285065 Escherichia coli JJ1886 17430084 YP_008721303.1 CDS P423_06300 NC_022648.1 1285077 1285430 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail attachment protein 1285077..1285430 Escherichia coli JJ1886 17430085 YP_008721304.1 CDS P423_06305 NC_022648.1 1285442 1286020 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1285442..1286020 Escherichia coli JJ1886 17430086 YP_008721305.1 CDS P423_06310 NC_022648.1 1286017 1286412 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1286017..1286412 Escherichia coli JJ1886 17430087 YP_008721306.1 CDS P423_06315 NC_022648.1 1286402 1287160 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1286402..1287160 Escherichia coli JJ1886 17430088 YP_008721307.1 CDS P423_06320 NC_022648.1 1287176 1287598 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1287176..1287598 Escherichia coli JJ1886 17430089 YP_008721308.1 CDS P423_06325 NC_022648.1 1287580 1288014 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1287580..1288014 Escherichia coli JJ1886 17430090 YP_008721309.1 CDS P423_06330 NC_022648.1 1288007 1290568 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1288007..1290568 Escherichia coli JJ1886 17430091 YP_008721310.1 CDS P423_06335 NC_022648.1 1290565 1290894 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1290565..1290894 Escherichia coli JJ1886 17430092 YP_008721311.1 CDS P423_06340 NC_022648.1 1290894 1291592 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1290894..1291592 Escherichia coli JJ1886 17430093 YP_008721312.1 CDS P423_06345 NC_022648.1 1291597 1292340 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1291597..1292340 Escherichia coli JJ1886 17430094 YP_008721313.1 CDS P423_06350 NC_022648.1 1292337 1292879 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein 1292337..1292879 Escherichia coli JJ1886 17430095 YP_008721314.1 CDS P423_06355 NC_022648.1 1292940 1296422 D Derived by automated computational analysis using gene prediction method: Protein Homology.; host specificity protein J 1292940..1296422 Escherichia coli JJ1886 17430096 YP_008721315.1 CDS P423_06360 NC_022648.1 1296481 1298502 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1296481..1298502 Escherichia coli JJ1886 17430097 YP_008721316.1 CDS P423_06365 NC_022648.1 1298499 1298777 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1298499..1298777 Escherichia coli JJ1886 17430098 YP_008721317.1 CDS P423_06370 NC_022648.1 1298790 1299083 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1298790..1299083 Escherichia coli JJ1886 17430099 YP_008721318.1 CDS P423_06375 NC_022648.1 1299175 1300032 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(1299175..1300032) Escherichia coli JJ1886 17430100 YP_008721319.1 CDS P423_06380 NC_022648.1 1300029 1300886 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(1300029..1300886) Escherichia coli JJ1886 17430101 YP_008721320.1 CDS P423_06385 NC_022648.1 1300883 1301710 R with SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; manganese transporter complement(1300883..1301710) Escherichia coli JJ1886 17430102 YP_008721321.1 CDS P423_06390 NC_022648.1 1301710 1302624 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron ABC transporter substrate-binding protein complement(1301710..1302624) Escherichia coli JJ1886 17430103 YP_008721322.1 CDS P423_06395 NC_022648.1 1303311 1304081 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1303311..1304081 Escherichia coli JJ1886 17430104 YP_008721323.1 CDS P423_06400 NC_022648.1 1304204 1304359 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1304204..1304359 Escherichia coli JJ1886 17430105 YP_008721324.1 CDS P423_06405 NC_022648.1 1304553 1304705 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; isocitrate dehydrogenase 1304553..1304705 Escherichia coli JJ1886 17430106 YP_008721325.1 CDS P423_06410 NC_022648.1 1304967 1305371 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1304967..1305371) Escherichia coli JJ1886 17430107 YP_008721326.1 CDS P423_06415 NC_022648.1 1305592 1306323 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MerR family transcriptional regulator complement(1305592..1306323) Escherichia coli JJ1886 17430108 YP_008721327.1 CDS P423_06420 NC_022648.1 1306528 1307739 R Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate phosphodiesterase complement(1306528..1307739) Escherichia coli JJ1886 17430109 YP_008721328.1 CDS P423_06425 NC_022648.1 1308053 1308289 D Derived by automated computational analysis using gene prediction method: Protein Homology.; two-component-system connector protein YcgZ 1308053..1308289 Escherichia coli JJ1886 17430110 YP_008721329.1 CDS P423_06430 NC_022648.1 1308332 1308604 D Derived by automated computational analysis using gene prediction method: Protein Homology.; two-component-system connector protein YmgA 1308332..1308604 Escherichia coli JJ1886 17430111 YP_008721330.1 CDS P423_06435 NC_022648.1 1308633 1308899 D Derived by automated computational analysis using gene prediction method: Protein Homology.; two-component-system connector protein AriR 1308633..1308899 Escherichia coli JJ1886 17430112 YP_008721331.1 CDS P423_06440 NC_022648.1 1309012 1309260 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1309012..1309260 Escherichia coli JJ1886 17430113 YP_008721332.1 CDS P423_06445 NC_022648.1 1309756 1310451 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase 1309756..1310451 Escherichia coli JJ1886 17430114 YP_008721333.1 CDS P423_06450 NC_022648.1 1310583 1310801 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1310583..1310801 Escherichia coli JJ1886 17430115 YP_008721334.1 CDS P423_06455 NC_022648.1 1310884 1311036 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1310884..1311036 Escherichia coli JJ1886 17430116 YP_008721335.1 CDS P423_06460 NC_022648.1 1312334 1312705 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; porin 1312334..1312705 Escherichia coli JJ1886 17430117 YP_008721336.1 CDS P423_06465 NC_022648.1 1312764 1313093 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1312764..1313093) Escherichia coli JJ1886 17430118 YP_008721337.1 CDS P423_06470 NC_022648.1 1313103 1313447 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1313103..1313447) Escherichia coli JJ1886 17430119 YP_008721338.1 CDS minE NC_022648.1 1314731 1314997 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division topological specificity factor MinE complement(1314731..1314997) Escherichia coli JJ1886 17430120 YP_008721339.1 CDS P423_06480 NC_022648.1 1315001 1315813 R ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division inhibitor MinD complement(1315001..1315813) Escherichia coli JJ1886 17430121 YP_008721340.1 CDS minC NC_022648.1 1315837 1316532 R blocks the formation of polar Z-ring septums; Derived by automated computational analysis using gene prediction method: Protein Homology.; septum formation inhibitor complement(1315837..1316532) Escherichia coli JJ1886 17430122 YP_008721341.1 CDS P423_06490 NC_022648.1 1317052 1317420 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1317052..1317420 Escherichia coli JJ1886 17430123 YP_008721342.1 CDS P423_06495 NC_022648.1 1317523 1317924 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Inhibitor of g-type lysozyme complement(1317523..1317924) Escherichia coli JJ1886 17430124 YP_008721343.1 CDS P423_06500 NC_022648.1 1317995 1318153 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1317995..1318153 Escherichia coli JJ1886 17430125 YP_008721344.1 CDS P423_06505 NC_022648.1 1318132 1318458 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1318132..1318458 Escherichia coli JJ1886 17430126 YP_008721345.1 CDS P423_06510 NC_022648.1 1318530 1319189 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1318530..1319189 Escherichia coli JJ1886 17430127 YP_008721346.1 CDS P423_06515 NC_022648.1 1319266 1319727 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1319266..1319727 Escherichia coli JJ1886 17430128 YP_008721347.1 CDS hlyE NC_022648.1 1319934 1320215 R Acts by forming a pore-like structure upon contact with mammalian cells; Derived by automated computational analysis using gene prediction method: Protein Homology.; hemolysin activation protein complement(1319934..1320215) Escherichia coli JJ1886 17430129 YP_008721348.1 CDS P423_06525 NC_022648.1 1320520 1320939 D binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase V subunit UmuD 1320520..1320939 Escherichia coli JJ1886 17430130 YP_008721349.1 CDS P423_06530 NC_022648.1 1320939 1322207 D binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase V subunit UmuC 1320939..1322207 Escherichia coli JJ1886 17430131 YP_008721350.1 CDS P423_06535 NC_022648.1 1322252 1322782 R disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; disulfide bond formation protein DsbB complement(1322252..1322782) Escherichia coli JJ1886 17430132 YP_008721351.1 CDS nhaB NC_022648.1 1322928 1324469 R involved in regulation of intracellular pH under alkaline conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter complement(1322928..1324469) Escherichia coli JJ1886 17430133 YP_008721352.1 CDS P423_06545 NC_022648.1 1324691 1325410 D Multifunctional regulator of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; fatty acid metabolism regulator 1324691..1325410 Escherichia coli JJ1886 17430134 YP_008721353.1 CDS P423_06550 NC_022648.1 1325462 1326994 R Derived by automated computational analysis using gene prediction method: Protein Homology.; SpoVR family protein complement(1325462..1326994) Escherichia coli JJ1886 17430135 YP_008721354.1 CDS P423_06555 NC_022648.1 1327324 1328622 D catalyzes the oxidative deamination of D-amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-amino acid dehydrogenase small subunit 1327324..1328622 Escherichia coli JJ1886 17430136 YP_008721355.1 CDS P423_06560 NC_022648.1 1328632 1329702 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine racemase 1328632..1329702 Escherichia coli JJ1886 17430137 YP_008721356.1 CDS cvrA NC_022648.1 1329759 1331495 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium:proton antiporter complement(1329759..1331495) Escherichia coli JJ1886 17430138 YP_008721357.1 CDS ldcA NC_022648.1 1331590 1332504 R catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-carboxypeptidase A complement(1331590..1332504) Escherichia coli JJ1886 17430139 YP_008721358.1 CDS emtA NC_022648.1 1332604 1333215 D catalyzes the cleavage of 1-4 beta-glycoside linkaged between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein endotransglycosylase E 1332604..1333215 Escherichia coli JJ1886 17430140 YP_008721359.1 CDS P423_06580 NC_022648.1 1333217 1333951 R Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar brake protein YcgR complement(1333217..1333951) Escherichia coli JJ1886 17430141 YP_008721360.1 CDS P423_06585 NC_022648.1 1334152 1334406 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1334152..1334406 Escherichia coli JJ1886 17430142 YP_008721361.1 CDS P423_06590 NC_022648.1 1334456 1336426 R Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor complement(1334456..1336426) Escherichia coli JJ1886 17430143 YP_008721362.1 CDS P423_06595 NC_022648.1 1336452 1337306 R involved in molybdenum transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum transporter complement(1336452..1337306) Escherichia coli JJ1886 17430144 YP_008721363.1 CDS P423_06600 NC_022648.1 1337303 1338115 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase complement(1337303..1338115) Escherichia coli JJ1886 17430145 YP_008721364.1 CDS P423_06605 NC_022648.1 1338125 1338883 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron ABC transporter ATP-binding protein complement(1338125..1338883) Escherichia coli JJ1886 17430146 YP_008721365.1 CDS P423_06610 NC_022648.1 1338880 1339860 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein complement(1338880..1339860) Escherichia coli JJ1886 17430147 YP_008721366.1 CDS P423_06615 NC_022648.1 1339860 1340882 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein complement(1339860..1340882) Escherichia coli JJ1886 17430148 YP_008721367.1 CDS treA NC_022648.1 1341212 1342909 R periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalase complement(1341212..1342909) Escherichia coli JJ1886 17430149 YP_008721368.1 CDS P423_06630 NC_022648.1 1343229 1344647 R phosphotransferaese subunit; phosphorylates dihydroxyacetone along with DhaK/DhaL; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxyacetone kinase subunit M complement(1343229..1344647) Escherichia coli JJ1886 17430150 YP_008721369.1 CDS P423_06635 NC_022648.1 1344658 1345290 R with DhaK and DhaM catalyzes the phosphorylation of dihydroxyacetone; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxyacetone kinase subunit DhaL complement(1344658..1345290) Escherichia coli JJ1886 17430151 YP_008721370.1 CDS P423_06640 NC_022648.1 1345301 1346371 R with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dihydroxyacetone kinase subunit K complement(1345301..1346371) Escherichia coli JJ1886 17430152 YP_008721371.1 CDS P423_06645 NC_022648.1 1346599 1348518 D Positively regulates the dhaKLM operon from a sigma-70 promoter; Derived by automated computational analysis using gene prediction method: Protein Homology.; Fis family transcriptional regulator 1346599..1348518 Escherichia coli JJ1886 17430153 YP_008721372.1 CDS P423_06650 NC_022648.1 1349021 1349173 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1349021..1349173) Escherichia coli JJ1886 17430154 YP_008721373.1 CDS P423_06655 NC_022648.1 1349810 1351567 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ribonuclease H 1349810..1351567 Escherichia coli JJ1886 17430155 YP_008721374.1 CDS P423_06660 NC_022648.1 1351814 1352941 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1351814..1352941 Escherichia coli JJ1886 17430156 YP_008721375.1 CDS P423_06665 NC_022648.1 1352938 1353453 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1352938..1353453 Escherichia coli JJ1886 17430157 YP_008721376.1 CDS P423_06670 NC_022648.1 1353455 1355341 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1353455..1355341 Escherichia coli JJ1886 17430158 YP_008721377.1 CDS P423_06675 NC_022648.1 1355909 1356154 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1355909..1356154) Escherichia coli JJ1886 17430159 YP_008721378.1 CDS P423_06680 NC_022648.1 1356221 1356556 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1356221..1356556) Escherichia coli JJ1886 17430160 YP_008721379.1 CDS P423_06685 NC_022648.1 1356587 1356946 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acyl-CoA dehydrogenase complement(1356587..1356946) Escherichia coli JJ1886 17430161 YP_008721380.1 CDS P423_06690 NC_022648.1 1356961 1357488 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1356961..1357488) Escherichia coli JJ1886 17430162 YP_008721381.1 CDS P423_06695 NC_022648.1 1357500 1357769 R activator of maltose metabolism genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1357500..1357769) Escherichia coli JJ1886 17430163 YP_008721382.1 CDS P423_06700 NC_022648.1 1357891 1358379 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1357891..1358379 Escherichia coli JJ1886 17430164 YP_008721383.1 CDS P423_06705 NC_022648.1 1358704 1359126 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1358704..1359126 Escherichia coli JJ1886 17430165 YP_008721384.1 CDS P423_06710 NC_022648.1 1359246 1359707 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1359246..1359707 Escherichia coli JJ1886 17430166 YP_008721385.1 CDS P423_06715 NC_022648.1 1359709 1360161 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1359709..1360161 Escherichia coli JJ1886 17430167 YP_008721386.1 CDS P423_06720 NC_022648.1 1360223 1361137 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 1360223..1361137 Escherichia coli JJ1886 17430168 YP_008721387.1 CDS P423_06725 NC_022648.1 1361124 1361738 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1361124..1361738) Escherichia coli JJ1886 17430169 YP_008721388.1 CDS P423_06730 NC_022648.1 1361961 1362158 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 1361961..1362158 Escherichia coli JJ1886 17430170 YP_008721389.1 CDS P423_06735 NC_022648.1 1362160 1362627 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1362160..1362627 Escherichia coli JJ1886 17430171 YP_008721390.1 CDS P423_06740 NC_022648.1 1362715 1363569 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1362715..1363569 Escherichia coli JJ1886 17430172 YP_008721391.1 CDS P423_06745 NC_022648.1 1364170 1365543 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1364170..1365543 Escherichia coli JJ1886 17430173 YP_008721392.1 CDS P423_06750 NC_022648.1 1365803 1366402 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS30 1365803..1366402 Escherichia coli JJ1886 17430174 YP_008721393.1 CDS P423_06755 NC_022648.1 1366540 1369197 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; beta-carotene 15,15-monooxygenase 1366540..1369197 Escherichia coli JJ1886 17430175 YP_008721394.1 CDS P423_06760 NC_022648.1 1369194 1369406 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1369194..1369406 Escherichia coli JJ1886 17430176 YP_008721395.1 CDS P423_06765 NC_022648.1 1369420 1370589 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1369420..1370589 Escherichia coli JJ1886 17430177 YP_008721396.1 CDS P423_06770 NC_022648.1 1370713 1370892 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1370713..1370892 Escherichia coli JJ1886 17430178 YP_008721397.1 CDS P423_06775 NC_022648.1 1371471 1371722 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS100 1371471..1371722 Escherichia coli JJ1886 17430179 YP_008721398.1 CDS P423_06780 NC_022648.1 1371857 1372027 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1371857..1372027 Escherichia coli JJ1886 17430180 YP_008721399.1 CDS P423_06785 NC_022648.1 1372345 1373148 R Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase complement(1372345..1373148) Escherichia coli JJ1886 17430181 YP_008721400.1 CDS P423_06790 NC_022648.1 1373196 1373480 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(1373196..1373480) Escherichia coli JJ1886 17430182 YP_008721401.1 CDS P423_06795 NC_022648.1 1373591 1374766 R Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase complement(1373591..1374766) Escherichia coli JJ1886 17430183 YP_008721402.1 CDS ychF NC_022648.1 1374981 1376072 R EngD; translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YchF complement(1374981..1376072) Escherichia coli JJ1886 17430184 YP_008721403.1 CDS P423_06805 NC_022648.1 1376189 1376773 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-tRNA hydrolase complement(1376189..1376773) Escherichia coli JJ1886 17430185 YP_008721404.1 CDS P423_06810 NC_022648.1 1377051 1377329 D YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1377051..1377329 Escherichia coli JJ1886 17430186 YP_008721405.1 CDS P423_06815 NC_022648.1 1377384 1379063 R role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(1377384..1379063) Escherichia coli JJ1886 17430187 YP_008721406.1 CDS P423_06820 NC_022648.1 1379188 1380201 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose-phosphate pyrophosphokinase complement(1379188..1380201) Escherichia coli JJ1886 17430188 YP_008721407.1 CDS P423_06825 NC_022648.1 1380286 1381137 R Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase complement(1380286..1381137) Escherichia coli JJ1886 17430189 YP_008721408.1 CDS lolB NC_022648.1 1381137 1381826 R Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein LolB complement(1381137..1381826) Escherichia coli JJ1886 17430190 YP_008721409.1 CDS hemA NC_022648.1 1381974 1383230 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamyl-tRNA reductase 1381974..1383230 Escherichia coli JJ1886 17430191 YP_008721410.1 CDS prfA NC_022648.1 1383272 1384354 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 1 1383272..1384354 Escherichia coli JJ1886 17430192 YP_008721411.1 CDS P423_06845 NC_022648.1 1384354 1385187 D HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1384354..1385187 Escherichia coli JJ1886 17430193 YP_008721412.1 CDS P423_06850 NC_022648.1 1385184 1385576 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1385184..1385576 Escherichia coli JJ1886 17430194 YP_008721413.1 CDS P423_06855 NC_022648.1 1385580 1386389 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1385580..1386389 Escherichia coli JJ1886 17430195 YP_008721414.1 CDS P423_06860 NC_022648.1 1386425 1387279 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydro-3-deoxyphosphooctonate aldolase 1386425..1387279 Escherichia coli JJ1886 17430196 YP_008721415.1 CDS P423_06865 NC_022648.1 1387428 1387562 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1387428..1387562) Escherichia coli JJ1886 17430197 YP_008721416.1 CDS P423_06870 NC_022648.1 1387940 1389040 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter complement(1387940..1389040) Escherichia coli JJ1886 17430198 YP_008721417.1 CDS chaB NC_022648.1 1389310 1389549 D in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transport regulator 1389310..1389549 Escherichia coli JJ1886 17430199 YP_008721418.1 CDS P423_06880 NC_022648.1 1389698 1390393 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1389698..1390393 Escherichia coli JJ1886 17430200 YP_008721419.1 CDS P423_06885 NC_022648.1 1390437 1390790 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1390437..1390790) Escherichia coli JJ1886 17430201 YP_008721420.1 CDS P423_06890 NC_022648.1 1390975 1392369 D Derived by automated computational analysis using gene prediction method: Protein Homology.; invasin 1390975..1392369 Escherichia coli JJ1886 17430202 YP_008721421.1 CDS P423_06895 NC_022648.1 1392370 1393020 R two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1392370..1393020) Escherichia coli JJ1886 17430203 YP_008721422.1 CDS P423_06900 NC_022648.1 1393013 1394809 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate/nitrite sensor protein NarX complement(1393013..1394809) Escherichia coli JJ1886 17430204 YP_008721423.1 CDS P423_06905 NC_022648.1 1395148 1396539 D involved in the transport of nitrate and nitrite; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate transporter 1395148..1396539 Escherichia coli JJ1886 17430205 YP_008721424.1 CDS narZ NC_022648.1 1396932 1400675 D with NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit alpha 1396932..1400675 Escherichia coli JJ1886 17430206 YP_008721425.1 CDS narH NC_022648.1 1400672 1402210 D with NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit beta 1400672..1402210 Escherichia coli JJ1886 17430207 YP_008721426.1 CDS P423_06920 NC_022648.1 1402207 1402917 D delta subunit of nitrate reductase 1; chaperone for the insertion of the molybdenum cofactor and assembly of nitrate reductase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase molybdenum cofactor assembly chaperone NarJ 1402207..1402917 Escherichia coli JJ1886 17430208 YP_008721427.1 CDS narI NC_022648.1 1402917 1403594 D with NarGJH catalyzes the reduction of nitrate; the gamma subunit localizes NarGHI to the membrane; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit gamma 1402917..1403594 Escherichia coli JJ1886 17430209 YP_008721428.1 CDS P423_06930 NC_022648.1 1403722 1404729 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3-oxoacyl-ACP synthase 1403722..1404729 Escherichia coli JJ1886 17430210 YP_008721429.1 CDS P423_06935 NC_022648.1 1404726 1405742 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1404726..1405742 Escherichia coli JJ1886 17430211 YP_008721430.1 CDS P423_06940 NC_022648.1 1405720 1406526 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; metallo-beta-lactamase 1405720..1406526 Escherichia coli JJ1886 17430212 YP_008721431.1 CDS P423_06945 NC_022648.1 1406523 1407809 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; coenzyme F390 synthetase 1406523..1407809 Escherichia coli JJ1886 17430213 YP_008721432.1 CDS P423_06950 NC_022648.1 1407806 1408408 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acid phosphatase 1407806..1408408 Escherichia coli JJ1886 17430214 YP_008721433.1 CDS P423_06955 NC_022648.1 1408401 1409525 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fatty acid hydroxylase 1408401..1409525 Escherichia coli JJ1886 17430215 YP_008721434.1 CDS P423_06960 NC_022648.1 1409512 1410603 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; linoleoyl-CoA desaturase 1409512..1410603 Escherichia coli JJ1886 17430216 YP_008721435.1 CDS P423_06970 NC_022648.1 1410864 1411706 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formyltetrahydrofolate deformylase complement(1410864..1411706) Escherichia coli JJ1886 17430218 YP_008721436.1 CDS P423_06975 NC_022648.1 1411756 1412115 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1411756..1412115) Escherichia coli JJ1886 17430219 YP_008721437.1 CDS P423_06980 NC_022648.1 1412327 1413232 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1412327..1413232 Escherichia coli JJ1886 17430220 YP_008721438.1 CDS P423_06985 NC_022648.1 1413324 1414337 D Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 1413324..1414337 Escherichia coli JJ1886 17430221 YP_008721439.1 CDS P423_06990 NC_022648.1 1414539 1415447 D together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1414539..1415447 Escherichia coli JJ1886 17430222 YP_008721440.1 CDS P423_06995 NC_022648.1 1415592 1416005 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(1415592..1416005) Escherichia coli JJ1886 17430223 YP_008721441.1 CDS P423_07000 NC_022648.1 1416609 1417226 D catalyzes the formation of thymidine 5'-phosphate from thymidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidine kinase 1416609..1417226 Escherichia coli JJ1886 17430224 YP_008721442.1 CDS P423_07010 NC_022648.1 1418684 1421359 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetaldehyde dehydrogenase complement(1418684..1421359) Escherichia coli JJ1886 17430226 YP_008721443.1 CDS P423_07015 NC_022648.1 1421836 1422483 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1421836..1422483 Escherichia coli JJ1886 17430227 YP_008721444.1 CDS P423_07020 NC_022648.1 1423176 1424852 D is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 1423176..1424852 Escherichia coli JJ1886 17430228 YP_008721445.1 CDS oppB NC_022648.1 1424938 1425858 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1424938..1425858 Escherichia coli JJ1886 17430229 YP_008721446.1 CDS P423_07030 NC_022648.1 1425873 1426781 D with OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1425873..1426781 Escherichia coli JJ1886 17430230 YP_008721447.1 CDS dppD NC_022648.1 1426793 1427806 D DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1426793..1427806 Escherichia coli JJ1886 17430231 YP_008721448.1 CDS dppF NC_022648.1 1427803 1428807 D Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1427803..1428807 Escherichia coli JJ1886 17430232 YP_008721449.1 CDS P423_07045 NC_022648.1 1428860 1429189 R highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; dsDNA-mimic protein complement(1428860..1429189) Escherichia coli JJ1886 17430233 YP_008721450.1 CDS cls NC_022648.1 1429224 1430684 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); Derived by automated computational analysis using gene prediction method: Protein Homology.; cardiolipin synthetase complement(1429224..1430684) Escherichia coli JJ1886 17430234 YP_008721451.1 CDS P423_07055 NC_022648.1 1431055 1432308 R Derived by automated computational analysis using gene prediction method: Protein Homology.; voltage-gated potassium channel complement(1431055..1432308) Escherichia coli JJ1886 17430235 YP_008721452.1 CDS P423_07060 NC_022648.1 1432608 1432904 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1432608..1432904) Escherichia coli JJ1886 17430236 YP_008721453.1 CDS P423_07065 NC_022648.1 1433113 1433844 D membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1433113..1433844 Escherichia coli JJ1886 17430237 YP_008721454.1 CDS P423_07070 NC_022648.1 1433884 1434282 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase complement(1433884..1434282) Escherichia coli JJ1886 17430238 YP_008721455.1 CDS P423_07075 NC_022648.1 1434387 1434926 R Involved in cell division; probably involved in intracellular septation; Derived by automated computational analysis using gene prediction method: Protein Homology.; intracellular septation protein A complement(1434387..1434926) Escherichia coli JJ1886 17430239 YP_008721456.1 CDS P423_07080 NC_022648.1 1434956 1435699 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1434956..1435699) Escherichia coli JJ1886 17430240 YP_008721457.1 CDS P423_07085 NC_022648.1 1436055 1436693 D receptor for colicin S4; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein W 1436055..1436693 Escherichia coli JJ1886 17430241 YP_008721458.1 CDS P423_07090 NC_022648.1 1436739 1437869 R Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase complement(1436739..1437869) Escherichia coli JJ1886 17430242 YP_008721459.1 CDS P423_07095 NC_022648.1 1437847 1438095 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; excisionase complement(1437847..1438095) Escherichia coli JJ1886 17430243 YP_008721460.1 CDS P423_07100 NC_022648.1 1438160 1440631 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1438160..1440631) Escherichia coli JJ1886 17430244 YP_008721461.1 CDS P423_07105 NC_022648.1 1440724 1440915 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1440724..1440915) Escherichia coli JJ1886 17430245 YP_008721462.1 CDS P423_07110 NC_022648.1 1440912 1441100 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division inhibition protein DicB complement(1440912..1441100) Escherichia coli JJ1886 17430246 YP_008721463.1 CDS P423_07115 NC_022648.1 1441666 1441884 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1441666..1441884) Escherichia coli JJ1886 17430247 YP_008721464.1 CDS P423_07120 NC_022648.1 1441914 1442042 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1441914..1442042) Escherichia coli JJ1886 17430248 YP_008721465.1 CDS P423_07125 NC_022648.1 1442044 1442280 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1442044..1442280) Escherichia coli JJ1886 17430249 YP_008721466.1 CDS P423_07130 NC_022648.1 1442472 1443188 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; repressor complement(1442472..1443188) Escherichia coli JJ1886 17430250 YP_008721467.1 CDS P423_07135 NC_022648.1 1443238 1443453 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1443238..1443453 Escherichia coli JJ1886 17430251 YP_008721468.1 CDS P423_07140 NC_022648.1 1443450 1443875 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Rha family transcriptional regulator 1443450..1443875 Escherichia coli JJ1886 17430252 YP_008721469.1 CDS P423_07145 NC_022648.1 1443973 1444860 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein 1443973..1444860 Escherichia coli JJ1886 17430253 YP_008721470.1 CDS P423_07150 NC_022648.1 1444867 1445613 D acts to load the DnaB helicase onto the initiation site during DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication protein DnaC 1444867..1445613 Escherichia coli JJ1886 17430254 YP_008721471.1 CDS P423_07155 NC_022648.1 1445635 1446405 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1445635..1446405 Escherichia coli JJ1886 17430255 YP_008721472.1 CDS P423_07160 NC_022648.1 1446421 1446846 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1446421..1446846 Escherichia coli JJ1886 17430256 YP_008721473.1 CDS P423_07165 NC_022648.1 1447120 1447686 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1447120..1447686 Escherichia coli JJ1886 17430257 YP_008721474.1 CDS P423_07170 NC_022648.1 1447867 1448079 D Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 1447867..1448079 Escherichia coli JJ1886 17430258 YP_008721475.1 CDS P423_07175 NC_022648.1 1448121 1448300 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1448121..1448300) Escherichia coli JJ1886 17430259 YP_008721476.1 CDS P423_07180 NC_022648.1 1448521 1449576 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1448521..1449576 Escherichia coli JJ1886 17430260 YP_008721477.1 CDS P423_07185 NC_022648.1 1449577 1449957 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endodeoxyribonuclease 1449577..1449957 Escherichia coli JJ1886 17430261 YP_008721478.1 CDS P423_07190 NC_022648.1 1449954 1450775 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antitermination protein 1449954..1450775 Escherichia coli JJ1886 17430262 YP_008721479.1 CDS P423_07195 NC_022648.1 1451002 1451199 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1451002..1451199 Escherichia coli JJ1886 17430263 YP_008721480.1 CDS P423_07200 NC_022648.1 1451351 1452400 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA adenine methylase 1451351..1452400 Escherichia coli JJ1886 17430264 YP_008721481.1 CDS P423_07220 NC_022648.1 1453614 1453949 R interacts RssB preventing the degradation of the stress sigma factor RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-adapter protein IraM complement(1453614..1453949) Escherichia coli JJ1886 17430268 YP_008721482.1 CDS P423_07225 NC_022648.1 1454210 1456063 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 9-O-acetyl-N-acetylneuraminic acid deacetylase 1454210..1456063 Escherichia coli JJ1886 17430269 YP_008721483.1 CDS P423_07230 NC_022648.1 1456214 1456429 D Derived by automated computational analysis using gene prediction method: Protein Homology.; holin 1456214..1456429 Escherichia coli JJ1886 17430270 YP_008721484.1 CDS P423_07235 NC_022648.1 1456434 1456778 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1456434..1456778 Escherichia coli JJ1886 17430271 YP_008721485.1 CDS P423_07240 NC_022648.1 1457122 1457655 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme 1457122..1457655 Escherichia coli JJ1886 17430272 YP_008721486.1 CDS P423_07245 NC_022648.1 1457948 1458079 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1457948..1458079 Escherichia coli JJ1886 17430273 YP_008721487.1 CDS P423_07250 NC_022648.1 1458082 1458198 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1458082..1458198 Escherichia coli JJ1886 17430274 YP_008721488.1 CDS P423_07255 NC_022648.1 1458214 1458792 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 1458214..1458792 Escherichia coli JJ1886 17430275 YP_008721489.1 CDS P423_07260 NC_022648.1 1458789 1459004 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1458789..1459004 Escherichia coli JJ1886 17430276 YP_008721490.1 CDS P423_07265 NC_022648.1 1459203 1459403 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1459203..1459403) Escherichia coli JJ1886 17430277 YP_008721491.1 CDS P423_07270 NC_022648.1 1459445 1459810 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNAse 1459445..1459810 Escherichia coli JJ1886 17430278 YP_008721492.1 CDS P423_07275 NC_022648.1 1460101 1460664 D Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase 1460101..1460664 Escherichia coli JJ1886 17430279 YP_008721493.1 CDS P423_07280 NC_022648.1 1460661 1462322 D Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase 1460661..1462322 Escherichia coli JJ1886 17430280 YP_008721494.1 CDS P423_07285 NC_022648.1 1462386 1464323 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Capsid protein 1462386..1464323 Escherichia coli JJ1886 17430281 YP_008721495.1 CDS P423_07290 NC_022648.1 1464535 1467120 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1464535..1467120 Escherichia coli JJ1886 17430282 YP_008721496.1 CDS P423_07295 NC_022648.1 1467117 1467443 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-packaging protein 1467117..1467443 Escherichia coli JJ1886 17430283 YP_008721497.1 CDS P423_07300 NC_022648.1 1467453 1467803 D Derived by automated computational analysis using gene prediction method: Protein Homology.; head-tail adaptor protein 1467453..1467803 Escherichia coli JJ1886 17430284 YP_008721498.1 CDS P423_07305 NC_022648.1 1467800 1468246 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1467800..1468246 Escherichia coli JJ1886 17430285 YP_008721499.1 CDS P423_07310 NC_022648.1 1468243 1468587 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1468243..1468587 Escherichia coli JJ1886 17430286 YP_008721500.1 CDS P423_07315 NC_022648.1 1468654 1469370 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1468654..1469370 Escherichia coli JJ1886 17430287 YP_008721501.1 CDS P423_07320 NC_022648.1 1469385 1469759 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail assembly protein 1469385..1469759 Escherichia coli JJ1886 17430288 YP_008721502.1 CDS P423_07325 NC_022648.1 1469783 1470064 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail protein 1469783..1470064 Escherichia coli JJ1886 17430289 YP_008721503.1 CDS P423_07330 NC_022648.1 1470112 1472142 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail length tape measure protein 1470112..1472142 Escherichia coli JJ1886 17430290 YP_008721504.1 CDS P423_07335 NC_022648.1 1472324 1473586 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 1472324..1473586 Escherichia coli JJ1886 17430291 YP_008721505.1 CDS P423_07340 NC_022648.1 1473567 1473689 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1473567..1473689 Escherichia coli JJ1886 17430292 YP_008721506.1 CDS P423_07345 NC_022648.1 1473842 1474717 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; beta-lactamase 1473842..1474717 Escherichia coli JJ1886 17430293 YP_008721507.1 CDS P423_07350 NC_022648.1 1474764 1475036 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Tryptophan synthase subunit beta like protein complement(1474764..1475036) Escherichia coli JJ1886 17430294 YP_008721508.1 CDS P423_07355 NC_022648.1 1475356 1476600 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein 1475356..1476600 Escherichia coli JJ1886 17430295 YP_008721509.1 CDS P423_07360 NC_022648.1 1476593 1476934 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1476593..1476934 Escherichia coli JJ1886 17430296 YP_008721510.1 CDS P423_07370 NC_022648.1 1478521 1479102 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail assembly protein 1478521..1479102 Escherichia coli JJ1886 17430298 YP_008721511.1 CDS P423_07375 NC_022648.1 1479445 1482918 D Derived by automated computational analysis using gene prediction method: Protein Homology.; host specificity protein J 1479445..1482918 Escherichia coli JJ1886 17430299 YP_008721512.1 CDS P423_07380 NC_022648.1 1482986 1483444 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1482986..1483444 Escherichia coli JJ1886 17430300 YP_008721513.1 CDS P423_07385 NC_022648.1 1483784 1485100 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1483784..1485100 Escherichia coli JJ1886 17430301 YP_008721514.1 CDS P423_07390 NC_022648.1 1485115 1485861 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATP-binding protein 1485115..1485861 Escherichia coli JJ1886 17430302 YP_008721515.1 CDS P423_07395 NC_022648.1 1485912 1486178 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1485912..1486178 Escherichia coli JJ1886 17430303 YP_008721516.1 CDS P423_07400 NC_022648.1 1486330 1489155 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1486330..1489155 Escherichia coli JJ1886 17430304 YP_008721517.1 CDS P423_07405 NC_022648.1 1489157 1489690 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail fiber assembly protein 1489157..1489690 Escherichia coli JJ1886 17430305 YP_008721518.1 CDS P423_07410 NC_022648.1 1489721 1490248 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail fiber assembly protein complement(1489721..1490248) Escherichia coli JJ1886 17430306 YP_008721519.1 CDS P423_07415 NC_022648.1 1490264 1491232 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail fiber protein complement(1490264..1491232) Escherichia coli JJ1886 17430307 YP_008721520.1 CDS P423_07420 NC_022648.1 1491739 1492395 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1491739..1492395) Escherichia coli JJ1886 17430308 YP_008721521.1 CDS P423_07425 NC_022648.1 1492464 1492733 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail fiber assembly protein 1492464..1492733 Escherichia coli JJ1886 17430309 YP_008721522.1 CDS P423_07435 NC_022648.1 1493145 1493702 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Rha family transcriptional regulator complement(1493145..1493702) Escherichia coli JJ1886 17430311 YP_008721523.1 CDS P423_07440 NC_022648.1 1494177 1494299 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1494177..1494299 Escherichia coli JJ1886 17430312 YP_008721524.1 CDS P423_07445 NC_022648.1 1494350 1495156 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan synthase subunit alpha complement(1494350..1495156) Escherichia coli JJ1886 17430313 YP_008721525.1 CDS P423_07450 NC_022648.1 1495156 1496349 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan synthase subunit beta complement(1495156..1496349) Escherichia coli JJ1886 17430314 YP_008721526.1 CDS P423_07455 NC_022648.1 1496361 1497719 R monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylanthranilate isomerase complement(1496361..1497719) Escherichia coli JJ1886 17430315 YP_008721527.1 CDS P423_07460 NC_022648.1 1497723 1499318 R bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate phosphoribosyltransferase complement(1497723..1499318) Escherichia coli JJ1886 17430316 YP_008721528.1 CDS P423_07465 NC_022648.1 1499318 1500880 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate synthase subunit I complement(1499318..1500880) Escherichia coli JJ1886 17430317 YP_008721529.1 CDS P423_07470 NC_022648.1 1501154 1502035 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine tRNA ribosyltransferase 1501154..1502035 Escherichia coli JJ1886 17430318 YP_008721530.1 CDS P423_07475 NC_022648.1 1502032 1502652 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1502032..1502652 Escherichia coli JJ1886 17430319 YP_008721531.1 CDS P423_07480 NC_022648.1 1502680 1504575 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1502680..1504575 Escherichia coli JJ1886 17430320 YP_008721532.1 CDS P423_07485 NC_022648.1 1504788 1505663 D catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridylate synthase B 1504788..1505663 Escherichia coli JJ1886 17430321 YP_008721533.1 CDS P423_07490 NC_022648.1 1505833 1506855 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1505833..1506855 Escherichia coli JJ1886 17430322 YP_008721534.1 CDS P423_07495 NC_022648.1 1506865 1507173 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1506865..1507173 Escherichia coli JJ1886 17430323 YP_008721535.1 CDS P423_07500 NC_022648.1 1507230 1507820 R catalyzes the formation of adenosylcobalamide from cobinamide and the formation of coenzyme B12 from cob(I)alamin; Derived by automated computational analysis using gene prediction method: Protein Homology.; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase complement(1507230..1507820) Escherichia coli JJ1886 17430324 YP_008721536.1 CDS P423_07505 NC_022648.1 1507817 1508575 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxoacyl-ACP reductase complement(1507817..1508575) Escherichia coli JJ1886 17430325 YP_008721537.1 CDS P423_07510 NC_022648.1 1508795 1509844 D multicopy suppressor of htrA(degP); Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 1508795..1509844 Escherichia coli JJ1886 17430326 YP_008721538.1 CDS P423_07515 NC_022648.1 1509880 1510131 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1509880..1510131) Escherichia coli JJ1886 17430327 YP_008721539.1 CDS P423_07520 NC_022648.1 1510511 1513108 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; Derived by automated computational analysis using gene prediction method: Protein Homology.; topoisomerase I 1510511..1513108 Escherichia coli JJ1886 17430328 YP_008721540.1 CDS cysB NC_022648.1 1513318 1514292 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; CysB family transcriptional regulator 1513318..1514292 Escherichia coli JJ1886 17430329 YP_008721541.1 CDS P423_07530 NC_022648.1 1514623 1514751 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1514623..1514751 Escherichia coli JJ1886 17430330 YP_008721542.1 CDS P423_07535 NC_022648.1 1514754 1514921 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1514754..1514921 Escherichia coli JJ1886 17430331 YP_008721543.1 CDS P423_07540 NC_022648.1 1514995 1515120 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1514995..1515120) Escherichia coli JJ1886 17430332 YP_008721544.1 CDS P423_07545 NC_022648.1 1515280 1517955 D Catalyzes the conversion of citrate to isocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aconitate hydratase 1515280..1517955 Escherichia coli JJ1886 17430333 YP_008721545.1 CDS ribA NC_022648.1 1518019 1518609 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP cyclohydrolase II complement(1518019..1518609) Escherichia coli JJ1886 17430334 YP_008721546.1 CDS P423_07555 NC_022648.1 1518779 1519543 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphatase B 1518779..1519543 Escherichia coli JJ1886 17430335 YP_008721547.1 CDS P423_07560 NC_022648.1 1519692 1520000 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1519692..1520000 Escherichia coli JJ1886 17430336 YP_008721548.1 CDS P423_07565 NC_022648.1 1520007 1521176 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1520007..1521176 Escherichia coli JJ1886 17430337 YP_008721549.1 CDS P423_07570 NC_022648.1 1521308 1522105 D Derived by automated computational analysis using gene prediction method: Protein Homology.; orotidine 5'-phosphate decarboxylase 1521308..1522105 Escherichia coli JJ1886 17430338 YP_008721550.1 CDS P423_07575 NC_022648.1 1522105 1522431 D involved in start site selection during the initiation of translation; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor Sui1 1522105..1522431 Escherichia coli JJ1886 17430339 YP_008721551.1 CDS P423_07580 NC_022648.1 1522557 1522775 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(1522557..1522775) Escherichia coli JJ1886 17430340 YP_008721552.1 CDS P423_07585 NC_022648.1 1523044 1523793 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(1523044..1523793) Escherichia coli JJ1886 17430341 YP_008721553.1 CDS P423_07590 NC_022648.1 1523882 1524055 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1523882..1524055) Escherichia coli JJ1886 17430342 YP_008721554.1 CDS P423_07595 NC_022648.1 1524203 1526188 R c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNase II stability modulator complement(1524203..1526188) Escherichia coli JJ1886 17430343 YP_008721555.1 CDS P423_07600 NC_022648.1 1526422 1528356 R Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; Derived by automated computational analysis using gene prediction method: Protein Homology.; exoribonuclease II complement(1526422..1528356) Escherichia coli JJ1886 17430344 YP_008721556.1 CDS P423_07605 NC_022648.1 1528424 1529551 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1528424..1529551) Escherichia coli JJ1886 17430345 YP_008721557.1 CDS P423_07610 NC_022648.1 1529696 1530484 R Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-ACP reductase complement(1529696..1530484) Escherichia coli JJ1886 17430346 YP_008721558.1 CDS P423_07615 NC_022648.1 1530962 1531528 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator 1530962..1531528 Escherichia coli JJ1886 17430347 YP_008721559.1 CDS P423_07620 NC_022648.1 1531677 1532798 D with AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1531677..1532798 Escherichia coli JJ1886 17430348 YP_008721560.1 CDS P423_07625 NC_022648.1 1532798 1535905 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1532798..1535905 Escherichia coli JJ1886 17430349 YP_008721561.1 CDS P423_07630 NC_022648.1 1535909 1537282 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1535909..1537282 Escherichia coli JJ1886 17430350 YP_008721562.1 CDS P423_07635 NC_022648.1 1537291 1538454 D Derived by automated computational analysis using gene prediction method: Protein Homology.; major facilitator transporter 1537291..1538454 Escherichia coli JJ1886 17430351 YP_008721563.1 CDS dppF NC_022648.1 1538502 1539308 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein complement(1538502..1539308) Escherichia coli JJ1886 17430352 YP_008721564.1 CDS dppD NC_022648.1 1539310 1540302 R DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein complement(1539310..1540302) Escherichia coli JJ1886 17430353 YP_008721565.1 CDS P423_07650 NC_022648.1 1540302 1541192 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(1540302..1541192) Escherichia coli JJ1886 17430354 YP_008721566.1 CDS P423_07655 NC_022648.1 1541179 1542144 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(1541179..1542144) Escherichia coli JJ1886 17430355 YP_008721567.1 CDS P423_07660 NC_022648.1 1542141 1543784 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(1542141..1543784) Escherichia coli JJ1886 17430356 YP_008721568.1 CDS P423_07665 NC_022648.1 1544097 1544342 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1544097..1544342) Escherichia coli JJ1886 17430357 YP_008721569.1 CDS pspF NC_022648.1 1544767 1545759 R transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1544767..1545759) Escherichia coli JJ1886 17430358 YP_008721570.1 CDS P423_07675 NC_022648.1 1545911 1546579 D involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 1545911..1546579 Escherichia coli JJ1886 17430359 YP_008721571.1 CDS pspB NC_022648.1 1546633 1546857 D DNA-binding transcriptional regulator; acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 1546633..1546857 Escherichia coli JJ1886 17430360 YP_008721572.1 CDS P423_07685 NC_022648.1 1546857 1547216 D with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1546857..1547216 Escherichia coli JJ1886 17430361 YP_008721573.1 CDS P423_07690 NC_022648.1 1547225 1547446 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 1547225..1547446 Escherichia coli JJ1886 17430362 YP_008721574.1 CDS P423_07695 NC_022648.1 1547521 1547835 D rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate:cyanide sulfurtransferase 1547521..1547835 Escherichia coli JJ1886 17430363 YP_008721575.1 CDS P423_07700 NC_022648.1 1548046 1549725 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sucrose phosphorylase 1548046..1549725 Escherichia coli JJ1886 17430364 YP_008721576.1 CDS P423_07705 NC_022648.1 1549739 1551031 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter substrate-binding protein 1549739..1551031 Escherichia coli JJ1886 17430365 YP_008721577.1 CDS P423_07710 NC_022648.1 1551052 1551933 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter permease 1551052..1551933 Escherichia coli JJ1886 17430366 YP_008721578.1 CDS P423_07715 NC_022648.1 1551920 1552762 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter permease 1551920..1552762 Escherichia coli JJ1886 17430367 YP_008721579.1 CDS P423_07720 NC_022648.1 1552793 1553845 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alcohol dehydrogenase 1552793..1553845 Escherichia coli JJ1886 17430368 YP_008721580.1 CDS P423_07725 NC_022648.1 1553863 1554651 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1553863..1554651 Escherichia coli JJ1886 17430369 YP_008721581.1 CDS P423_07730 NC_022648.1 1554673 1555716 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; oxidoreductase 1554673..1555716 Escherichia coli JJ1886 17430370 YP_008721582.1 CDS P423_07735 NC_022648.1 1555713 1557980 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl hydrolase family 65 1555713..1557980 Escherichia coli JJ1886 17430371 YP_008721583.1 CDS P423_07740 NC_022648.1 1557977 1558636 D catalyzes the interconversion of beta-D-glucose 6-phosphate to beta-D-glucose 1-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; beta-phosphoglucomutase 1557977..1558636 Escherichia coli JJ1886 17430372 YP_008721584.1 CDS P423_07745 NC_022648.1 1558650 1559732 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter ATP-binding protein 1558650..1559732 Escherichia coli JJ1886 17430373 YP_008721585.1 CDS P423_07750 NC_022648.1 1559777 1560682 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1559777..1560682 Escherichia coli JJ1886 17430374 YP_008721586.1 CDS P423_07755 NC_022648.1 1560733 1561731 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator complement(1560733..1561731) Escherichia coli JJ1886 17430375 YP_008721587.1 CDS P423_07760 NC_022648.1 1561887 1563284 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1561887..1563284 Escherichia coli JJ1886 17430376 YP_008721588.1 CDS P423_07765 NC_022648.1 1563281 1564342 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1563281..1564342 Escherichia coli JJ1886 17430377 YP_008721589.1 CDS P423_07770 NC_022648.1 1564490 1566031 D regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1564490..1566031 Escherichia coli JJ1886 17430378 YP_008721590.1 CDS tpx NC_022648.1 1566075 1566581 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid hydroperoxide peroxidase complement(1566075..1566581) Escherichia coli JJ1886 17430379 YP_008721591.1 CDS P423_07780 NC_022648.1 1566700 1567665 D catalyzes the epimerization of L-alanyl-D-glutamate to L-alanyl-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-Ala-D/L-Glu epimerase 1566700..1567665 Escherichia coli JJ1886 17430380 YP_008721592.1 CDS P423_07785 NC_022648.1 1567640 1568368 R Derived by automated computational analysis using gene prediction method: Protein Homology.; murein peptide amidase A complement(1567640..1568368) Escherichia coli JJ1886 17430381 YP_008721593.1 CDS P423_07790 NC_022648.1 1568659 1569297 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent dehydratase complement(1568659..1569297) Escherichia coli JJ1886 17430382 YP_008721594.1 CDS P423_07795 NC_022648.1 1569368 1570300 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1569368..1570300) Escherichia coli JJ1886 17430383 YP_008721595.1 CDS P423_07800 NC_022648.1 1570426 1571325 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 1570426..1571325 Escherichia coli JJ1886 17430384 YP_008721596.1 CDS P423_07805 NC_022648.1 1571662 1573275 D is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 1571662..1573275 Escherichia coli JJ1886 17430385 YP_008721597.1 CDS P423_07810 NC_022648.1 1573326 1574357 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MscS family inner membrane protein YnaI complement(1573326..1574357) Escherichia coli JJ1886 17430386 YP_008721598.1 CDS P423_07815 NC_022648.1 1574601 1574858 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1574601..1574858 Escherichia coli JJ1886 17430387 YP_008721599.1 CDS P423_07820 NC_022648.1 1574908 1575858 R with UspC and UspD is involved in resistance to UV irradiation; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein E complement(1574908..1575858) Escherichia coli JJ1886 17430388 YP_008721600.1 CDS P423_07825 NC_022648.1 1576010 1576762 R Global transcription factor that controls the expression of over 100 target genes in response to anoxia; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate/nitrate reduction transcriptional regulator complement(1576010..1576762) Escherichia coli JJ1886 17430389 YP_008721601.1 CDS P423_07830 NC_022648.1 1576957 1577472 R Derived by automated computational analysis using gene prediction method: Protein Homology.; O-6-alkylguanine-DNA:cysteine-protein methyltransferase complement(1576957..1577472) Escherichia coli JJ1886 17430390 YP_008721602.1 CDS P423_07835 NC_022648.1 1578015 1578830 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; AraC family transcriptional regulator complement(1578015..1578830) Escherichia coli JJ1886 17430391 YP_008721603.1 CDS P423_07840 NC_022648.1 1578927 1579955 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hemolysin D 1578927..1579955 Escherichia coli JJ1886 17430392 YP_008721604.1 CDS P423_07845 NC_022648.1 1579952 1581466 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MFS transporter 1579952..1581466 Escherichia coli JJ1886 17430393 YP_008721605.1 CDS P423_07850 NC_022648.1 1581661 1582224 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA endonuclease SmrA 1581661..1582224 Escherichia coli JJ1886 17430394 YP_008721606.1 CDS P423_07855 NC_022648.1 1582245 1583477 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; diguanylate cyclase complement(1582245..1583477) Escherichia coli JJ1886 17430395 YP_008721607.1 CDS zntB NC_022648.1 1583732 1584715 D Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter 1583732..1584715 Escherichia coli JJ1886 17430396 YP_008721608.1 CDS P423_07865 NC_022648.1 1585193 1586566 D exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 1585193..1586566 Escherichia coli JJ1886 17430397 YP_008721609.1 CDS P423_07870 NC_022648.1 1586694 1587629 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; forms 2-thiocytidine (s(2)C); Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tRNA 2-thiocytidine biosynthesis protein TtcA complement(1586694..1587629) Escherichia coli JJ1886 17430398 YP_008721610.1 CDS P423_07875 NC_022648.1 1587681 1587782 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1587681..1587782) Escherichia coli JJ1886 17430399 YP_008721611.1 CDS P423_07880 NC_022648.1 1589498 1589767 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1589498..1589767) Escherichia coli JJ1886 17430400 YP_008721612.1 CDS P423_07885 NC_022648.1 1589955 1590389 R Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein F complement(1589955..1590389) Escherichia coli JJ1886 17430401 YP_008721613.1 CDS P423_07890 NC_022648.1 1590530 1591663 R allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C complement(1590530..1591663) Escherichia coli JJ1886 17430402 YP_008721614.1 CDS P423_07895 NC_022648.1 1591855 1592028 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1591855..1592028) Escherichia coli JJ1886 17430403 YP_008721615.1 CDS P423_07900 NC_022648.1 1592029 1595553 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate-flavodoxin oxidoreductase complement(1592029..1595553) Escherichia coli JJ1886 17430404 YP_008721616.1 CDS P423_07905 NC_022648.1 1595827 1596093 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1595827..1596093 Escherichia coli JJ1886 17430405 YP_008721617.1 CDS P423_07910 NC_022648.1 1596090 1596512 R Derived by automated computational analysis using gene prediction method: Protein Homology.; heat-inducible protein complement(1596090..1596512) Escherichia coli JJ1886 17430406 YP_008721618.1 CDS P423_07915 NC_022648.1 1596623 1597612 R fermentative; catalyzes the formationof pyruvate from lactate; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-lactate dehydrogenase complement(1596623..1597612) Escherichia coli JJ1886 17430407 YP_008721619.1 CDS P423_07920 NC_022648.1 1597820 1600459 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1597820..1600459 Escherichia coli JJ1886 17430408 YP_008721620.1 CDS P423_07925 NC_022648.1 1600456 1600641 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1600456..1600641 Escherichia coli JJ1886 17430409 YP_008721621.1 CDS P423_07930 NC_022648.1 1600649 1600975 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1600649..1600975 Escherichia coli JJ1886 17430410 YP_008721622.1 CDS P423_07940 NC_022648.1 1602071 1610569 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1602071..1610569 Escherichia coli JJ1886 17430412 YP_008721623.1 CDS P423_07945 NC_022648.1 1610789 1611655 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1610789..1611655 Escherichia coli JJ1886 17430413 YP_008721624.1 CDS P423_07950 NC_022648.1 1611695 1612300 R FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; Derived by automated computational analysis using gene prediction method: Protein Homology.; azoreductase complement(1611695..1612300) Escherichia coli JJ1886 17430414 YP_008721625.1 CDS P423_07955 NC_022648.1 1612501 1616403 D involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 1612501..1616403 Escherichia coli JJ1886 17430415 YP_008721626.1 CDS P423_07960 NC_022648.1 1616676 1617476 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1616676..1617476 Escherichia coli JJ1886 17430416 YP_008721627.1 CDS P423_07965 NC_022648.1 1617686 1619125 D NAD-linked; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase 1617686..1619125 Escherichia coli JJ1886 17430417 YP_008721628.1 CDS P423_07970 NC_022648.1 1619167 1620168 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glyceraldehyde-3-phosphate dehydrogenase complement(1619167..1620168) Escherichia coli JJ1886 17430418 YP_008721629.1 CDS P423_07980 NC_022648.1 1620357 1620887 D B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome B561 1620357..1620887 Escherichia coli JJ1886 17430419 YP_008721630.1 CDS P423_07985 NC_022648.1 1621132 1621305 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1621132..1621305 Escherichia coli JJ1886 17430420 YP_008721631.1 CDS P423_07990 NC_022648.1 1621377 1621526 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protein hokC complement(1621377..1621526) Escherichia coli JJ1886 17430421 YP_008721632.1 CDS P423_07995 NC_022648.1 1621939 1622232 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; methyl-accepting chemotaxis protein 1621939..1622232 Escherichia coli JJ1886 17430422 YP_008721633.1 CDS P423_08000 NC_022648.1 1622270 1623193 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(1622270..1623193) Escherichia coli JJ1886 17430423 YP_008721634.1 CDS P423_08005 NC_022648.1 1623410 1624753 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1623410..1624753 Escherichia coli JJ1886 17430424 YP_008721635.1 CDS mdoD NC_022648.1 1624978 1626633 D involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein D 1624978..1626633 Escherichia coli JJ1886 17430425 YP_008721636.1 CDS P423_08015 NC_022648.1 1626773 1626997 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1626773..1626997 Escherichia coli JJ1886 17430426 YP_008721637.1 CDS P423_08020 NC_022648.1 1627060 1627599 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal-protein-L7/L12-serine acetyltransferase 1627060..1627599 Escherichia coli JJ1886 17430427 YP_008721638.1 CDS P423_08025 NC_022648.1 1627591 1628571 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase complement(1627591..1628571) Escherichia coli JJ1886 17430428 YP_008721639.1 CDS P423_08030 NC_022648.1 1628695 1629687 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance protein TehA 1628695..1629687 Escherichia coli JJ1886 17430429 YP_008721640.1 CDS P423_08035 NC_022648.1 1629684 1630277 D with TehA confers resistance to tellurite; Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance protein TehB 1629684..1630277 Escherichia coli JJ1886 17430430 YP_008721641.1 CDS P423_08040 NC_022648.1 1630580 1631248 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1630580..1631248 Escherichia coli JJ1886 17430431 YP_008721642.1 CDS P423_08045 NC_022648.1 1631283 1632455 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1631283..1632455) Escherichia coli JJ1886 17430432 YP_008721643.1 CDS P423_08050 NC_022648.1 1632547 1633083 D Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 1632547..1633083 Escherichia coli JJ1886 17430433 YP_008721644.1 CDS P423_08055 NC_022648.1 1633156 1635117 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 1633156..1635117 Escherichia coli JJ1886 17430434 YP_008721645.1 CDS P423_08060 NC_022648.1 1635209 1635439 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1635209..1635439) Escherichia coli JJ1886 17430435 YP_008721646.1 CDS P423_08065 NC_022648.1 1635651 1635854 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 1635651..1635854 Escherichia coli JJ1886 17430436 YP_008721647.1 CDS P423_08070 NC_022648.1 1635933 1637339 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 1635933..1637339 Escherichia coli JJ1886 17430437 YP_008721648.1 CDS P423_08075 NC_022648.1 1637584 1638729 D Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine/putrescine ABC transporter substrate-binding protein 1637584..1638729 Escherichia coli JJ1886 17430438 YP_008721649.1 CDS P423_08080 NC_022648.1 1638747 1639760 D Derived by automated computational analysis using gene prediction method: Protein Homology.; polyamine ABC transporter ATP-binding protein 1638747..1639760 Escherichia coli JJ1886 17430439 YP_008721650.1 CDS P423_08085 NC_022648.1 1639761 1640702 D Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine/putrescine ABC transporter permease 1639761..1640702 Escherichia coli JJ1886 17430440 YP_008721651.1 CDS P423_08090 NC_022648.1 1640692 1641486 D Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine/putrescine ABC transporter permease 1640692..1641486 Escherichia coli JJ1886 17430441 YP_008721652.1 CDS P423_08095 NC_022648.1 1641508 1642932 D catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-aminobutyraldehyde dehydrogenase 1641508..1642932 Escherichia coli JJ1886 17430442 YP_008721653.1 CDS P423_08100 NC_022648.1 1643272 1643493 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1643272..1643493 Escherichia coli JJ1886 17430443 YP_008721654.1 CDS P423_08105 NC_022648.1 1643579 1643812 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1643579..1643812 Escherichia coli JJ1886 17430444 YP_008721655.1 CDS P423_08110 NC_022648.1 1643813 1644262 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1643813..1644262) Escherichia coli JJ1886 17430445 YP_008721656.1 CDS P423_08115 NC_022648.1 1644259 1644777 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyltransferase complement(1644259..1644777) Escherichia coli JJ1886 17430446 YP_008721657.1 CDS P423_08120 NC_022648.1 1644984 1645220 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GntR family transcriptional regulator 1644984..1645220 Escherichia coli JJ1886 17430447 YP_008721658.1 CDS P423_08125 NC_022648.1 1645258 1647360 R Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor complement(1645258..1647360) Escherichia coli JJ1886 17430448 YP_008721659.1 CDS P423_08130 NC_022648.1 1647602 1648663 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1647602..1648663 Escherichia coli JJ1886 17430449 YP_008721660.1 CDS P423_08135 NC_022648.1 1648776 1650275 R involved in the transporte of L-asparagine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-asparagine permease complement(1648776..1650275) Escherichia coli JJ1886 17430450 YP_008721661.1 CDS P423_08140 NC_022648.1 1651087 1652223 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1651087..1652223 Escherichia coli JJ1886 17430451 YP_008721662.1 CDS P423_08145 NC_022648.1 1652294 1652863 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1652294..1652863) Escherichia coli JJ1886 17430452 YP_008721663.1 CDS P423_08150 NC_022648.1 1653038 1653883 D catalyzes the addition of the acetyl moity of acetyl-CoA to an N-hydroxy-arylamine to form an N-acetoxyarylamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-hydroxyarylamine O-acetyltransferase 1653038..1653883 Escherichia coli JJ1886 17430453 YP_008721664.1 CDS P423_08155 NC_022648.1 1653979 1654872 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1653979..1654872) Escherichia coli JJ1886 17430454 YP_008721665.1 CDS narI NC_022648.1 1654952 1655632 R with NarGJH catalyzes the reduction of nitrate; the gamma subunit localizes NarGHI to the membrane; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit gamma complement(1654952..1655632) Escherichia coli JJ1886 17430455 YP_008721666.1 CDS P423_08165 NC_022648.1 1655629 1656324 R delta subunit of nitrate reductase 1; chaperone for the insertion of the molybdenum cofactor and assembly of nitrate reductase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase molybdenum cofactor assembly chaperone NarJ complement(1655629..1656324) Escherichia coli JJ1886 17430456 YP_008721667.1 CDS narH NC_022648.1 1656324 1657868 R with NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit beta complement(1656324..1657868) Escherichia coli JJ1886 17430457 YP_008721668.1 CDS narZ NC_022648.1 1657865 1661605 R with NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit alpha complement(1657865..1661605) Escherichia coli JJ1886 17430458 YP_008721669.1 CDS P423_08180 NC_022648.1 1661700 1663088 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite extrusion protein 2 complement(1661700..1663088) Escherichia coli JJ1886 17430459 YP_008721670.1 CDS P423_08185 NC_022648.1 1663361 1664242 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid exporter complement(1663361..1664242) Escherichia coli JJ1886 17430460 YP_008721671.1 CDS P423_08190 NC_022648.1 1664474 1665061 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfate ABC transporter substrate-binding protein 1664474..1665061 Escherichia coli JJ1886 17430461 YP_008721672.1 CDS P423_08195 NC_022648.1 1665110 1667521 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; formate dehydrogenase subunit alpha 1665110..1667521 Escherichia coli JJ1886 17430462 YP_008721673.1 CDS P423_08200 NC_022648.1 1667534 1668418 D beta subunit; involved in the use of formate as an electron donor during aerobic respiration; acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit); Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit beta 1667534..1668418 Escherichia coli JJ1886 17430463 YP_008721674.1 CDS P423_08205 NC_022648.1 1668411 1669064 D cytochrome b556(FDO) component; heme containing; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit gamma 1668411..1669064 Escherichia coli JJ1886 17430464 YP_008721675.1 CDS P423_08210 NC_022648.1 1669114 1669398 R Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator complement(1669114..1669398) Escherichia coli JJ1886 17430465 YP_008721676.1 CDS adhP NC_022648.1 1669861 1670871 R similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetaldehyde reductase complement(1669861..1670871) Escherichia coli JJ1886 17430466 YP_008721677.1 CDS P423_08220 NC_022648.1 1671005 1672702 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate dehydrogenase complement(1671005..1672702) Escherichia coli JJ1886 17430467 YP_008721678.1 CDS P423_08225 NC_022648.1 1672751 1672840 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1672751..1672840 Escherichia coli JJ1886 17430468 YP_008721679.1 CDS rpsV NC_022648.1 1672858 1672995 R protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S22 complement(1672858..1672995) Escherichia coli JJ1886 17430469 YP_008721680.1 CDS P423_08235 NC_022648.1 1673097 1673312 R Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm-dependent modulation protein complement(1673097..1673312) Escherichia coli JJ1886 17430470 YP_008721681.1 CDS P423_08240 NC_022648.1 1673655 1674086 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxiredoxin 1673655..1674086 Escherichia coli JJ1886 17430471 YP_008721682.1 CDS P423_08245 NC_022648.1 1674276 1676675 R heme-regulated phosphodiesterase with phosphodiesterase activity with cGMP; cold- and stationary phase-induced bioflim regulator; oxygen sensor; Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate phosphodiesterase complement(1674276..1676675) Escherichia coli JJ1886 17430472 YP_008721683.1 CDS P423_08250 NC_022648.1 1676678 1676917 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1676678..1676917) Escherichia coli JJ1886 17430473 YP_008721684.1 CDS P423_08255 NC_022648.1 1677241 1678560 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1677241..1678560) Escherichia coli JJ1886 17430474 YP_008721685.1 CDS P423_08260 NC_022648.1 1678691 1680226 R Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter complement(1678691..1680226) Escherichia coli JJ1886 17430475 YP_008721686.1 CDS P423_08265 NC_022648.1 1680382 1681782 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate decarboxylase complement(1680382..1681782) Escherichia coli JJ1886 17430476 YP_008721687.1 CDS P423_08270 NC_022648.1 1681793 1681936 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1681793..1681936) Escherichia coli JJ1886 17430477 YP_008721688.1 CDS P423_08275 NC_022648.1 1682144 1682998 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptidase M16 complement(1682144..1682998) Escherichia coli JJ1886 17430478 YP_008721689.1 CDS P423_08280 NC_022648.1 1683067 1684224 R Derived by automated computational analysis using gene prediction method: Protein Homology.; radical SAM protein complement(1683067..1684224) Escherichia coli JJ1886 17430479 YP_008721690.1 CDS P423_08285 NC_022648.1 1684276 1685958 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfatase complement(1684276..1685958) Escherichia coli JJ1886 17430480 YP_008721691.1 CDS P423_08290 NC_022648.1 1686360 1687121 R regulates the cellular response to acid resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(1686360..1687121) Escherichia coli JJ1886 17430481 YP_008721692.1 CDS P423_08295 NC_022648.1 1687196 1687393 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Two-protein-system connector protein SafA complement(1687196..1687393) Escherichia coli JJ1886 17430482 YP_008721693.1 CDS P423_08300 NC_022648.1 1687641 1689920 R in Escherichia coli it may be involved in repression of type III secretion system (TTSS) genes of the host cell; involved with increased resistance to low pH; member of the prokaryotic molybdopterin-containing oxidoreductase family; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1687641..1689920) Escherichia coli JJ1886 17430483 YP_008721694.1 CDS P423_08305 NC_022648.1 1690259 1691173 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimH complement(1690259..1691173) Escherichia coli JJ1886 17430484 YP_008721695.1 CDS P423_08310 NC_022648.1 1691233 1691736 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimG complement(1691233..1691736) Escherichia coli JJ1886 17430485 YP_008721696.1 CDS P423_08315 NC_022648.1 1691749 1692279 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein ydeS complement(1691749..1692279) Escherichia coli JJ1886 17430486 YP_008721697.1 CDS P423_08320 NC_022648.1 1692293 1694944 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimD complement(1692293..1694944) Escherichia coli JJ1886 17430487 YP_008721698.1 CDS P423_08325 NC_022648.1 1694986 1695696 R involved in type 1 fimbriae biosynthesis, interacts with FimH; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein FimC complement(1694986..1695696) Escherichia coli JJ1886 17430488 YP_008721699.1 CDS fimA NC_022648.1 1696058 1696621 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type-1 fimbrial protein subunit A complement(1696058..1696621) Escherichia coli JJ1886 17430489 YP_008721700.1 CDS P423_08335 NC_022648.1 1697532 1698854 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; serine/threonine protein kinase complement(1697532..1698854) Escherichia coli JJ1886 17430490 YP_008721701.1 CDS P423_08340 NC_022648.1 1698854 1699120 R Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin complement(1698854..1699120) Escherichia coli JJ1886 17430491 YP_008721702.1 CDS P423_08345 NC_022648.1 1699428 1700186 D catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; Derived by automated computational analysis using gene prediction method: Protein Homology.; trans-aconitate 2-methyltransferase 1699428..1700186 Escherichia coli JJ1886 17430492 YP_008721703.1 CDS P423_08350 NC_022648.1 1700190 1701104 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1700190..1701104) Escherichia coli JJ1886 17430493 YP_008721704.1 CDS P423_08355 NC_022648.1 1701301 1702752 R catalyzes the formation of D-tagaturonate from D-altronate; Derived by automated computational analysis using gene prediction method: Protein Homology.; altronate oxidoreductase complement(1701301..1702752) Escherichia coli JJ1886 17430494 YP_008721705.1 CDS P423_08360 NC_022648.1 1702979 1704397 R Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase complement(1702979..1704397) Escherichia coli JJ1886 17430495 YP_008721706.1 CDS P423_08365 NC_022648.1 1704536 1704895 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1704536..1704895) Escherichia coli JJ1886 17430496 YP_008721707.1 CDS P423_08370 NC_022648.1 1704895 1705821 R catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminase complement(1704895..1705821) Escherichia coli JJ1886 17430497 YP_008721708.1 CDS P423_08375 NC_022648.1 1705885 1707273 R Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase complement(1705885..1707273) Escherichia coli JJ1886 17430498 YP_008721709.1 CDS P423_08380 NC_022648.1 1707374 1708255 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 1707374..1708255 Escherichia coli JJ1886 17430499 YP_008721710.1 CDS P423_08385 NC_022648.1 1708594 1709784 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose transporter 1708594..1709784 Escherichia coli JJ1886 17430500 YP_008721711.1 CDS P423_08390 NC_022648.1 1709809 1710474 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1709809..1710474) Escherichia coli JJ1886 17430501 YP_008721712.1 CDS P423_08395 NC_022648.1 1710686 1711120 D Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1710686..1711120 Escherichia coli JJ1886 17430502 YP_008721713.1 CDS P423_08400 NC_022648.1 1711141 1711524 D transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1711141..1711524 Escherichia coli JJ1886 17430503 YP_008721714.1 CDS P423_08405 NC_022648.1 1711556 1711774 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1711556..1711774 Escherichia coli JJ1886 17430504 YP_008721715.1 CDS P423_08410 NC_022648.1 1711805 1712704 R Derived by automated computational analysis using gene prediction method: Protein Homology.; O-acetylserine/cysteine export protein complement(1711805..1712704) Escherichia coli JJ1886 17430505 YP_008721716.1 CDS P423_08415 NC_022648.1 1712899 1714086 D YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1712899..1714086 Escherichia coli JJ1886 17430506 YP_008721717.1 CDS P423_08420 NC_022648.1 1714213 1714308 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1714213..1714308 Escherichia coli JJ1886 17430507 YP_008721718.1 CDS P423_08425 NC_022648.1 1714527 1715417 R required for pgaD induction; Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase complement(1714527..1715417) Escherichia coli JJ1886 17430508 YP_008721719.1 CDS P423_08430 NC_022648.1 1715683 1715835 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1715683..1715835 Escherichia coli JJ1886 17430509 YP_008721720.1 CDS P423_08435 NC_022648.1 1715924 1717969 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dipeptidyl carboxypeptidase II complement(1715924..1717969) Escherichia coli JJ1886 17430510 YP_008721721.1 CDS P423_08440 NC_022648.1 1718106 1718852 D NADP(+)-dependent; catalyzes the formation of 3-hydroxypropionate from the toxic malonic semialdehyde, catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; malonic semialdehyde reductase 1718106..1718852 Escherichia coli JJ1886 17430511 YP_008721722.1 CDS P423_08445 NC_022648.1 1718941 1719627 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 1718941..1719627 Escherichia coli JJ1886 17430512 YP_008721723.1 CDS P423_08450 NC_022648.1 1719804 1720007 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1719804..1720007 Escherichia coli JJ1886 17430513 YP_008721724.1 CDS P423_08455 NC_022648.1 1720043 1721503 R Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase complement(1720043..1721503) Escherichia coli JJ1886 17430514 YP_008721725.1 CDS P423_08460 NC_022648.1 1721592 1722920 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1721592..1722920) Escherichia coli JJ1886 17430515 YP_008721726.1 CDS P423_08465 NC_022648.1 1723017 1724036 R Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate oxidoreductase complement(1723017..1724036) Escherichia coli JJ1886 17430516 YP_008721727.1 CDS P423_08470 NC_022648.1 1724048 1725262 R starvation-sensing protein; maybe involved in homoserine lactone degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional D-altronate/D-mannonate dehydratase complement(1724048..1725262) Escherichia coli JJ1886 17430517 YP_008721728.1 CDS P423_08475 NC_022648.1 1725468 1725794 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1725468..1725794) Escherichia coli JJ1886 17430518 YP_008721729.1 CDS P423_08480 NC_022648.1 1725929 1726270 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1725929..1726270 Escherichia coli JJ1886 17430519 YP_008721730.1 CDS P423_08485 NC_022648.1 1726305 1726865 D catalyzes the formation of N(1)- and N(8)-acetylspermidine from spermidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine N1-acetyltransferase 1726305..1726865 Escherichia coli JJ1886 17430520 YP_008721731.1 CDS P423_08490 NC_022648.1 1726868 1727578 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(1726868..1727578) Escherichia coli JJ1886 17430521 YP_008721732.1 CDS P423_08495 NC_022648.1 1727686 1727991 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1727686..1727991 Escherichia coli JJ1886 17430522 YP_008721733.1 CDS P423_08500 NC_022648.1 1728190 1730616 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A 1728190..1730616 Escherichia coli JJ1886 17430523 YP_008721734.1 CDS P423_08510 NC_022648.1 1732257 1732874 D oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B 1732257..1732874 Escherichia coli JJ1886 17430525 YP_008721735.1 CDS P423_08515 NC_022648.1 1732876 1733730 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit H 1732876..1733730 Escherichia coli JJ1886 17430526 YP_008721736.1 CDS P423_08520 NC_022648.1 1733773 1734387 D binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; twin-argninine leader-binding protein DmsD 1733773..1734387 Escherichia coli JJ1886 17430527 YP_008721737.1 CDS P423_08525 NC_022648.1 1734584 1735840 D Derived by automated computational analysis using gene prediction method: Protein Homology.; voltage-gated ClC-type chloride channel ClcB 1734584..1735840 Escherichia coli JJ1886 17430528 YP_008721738.1 CDS bioD NC_022648.1 1735793 1736488 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; Derived by automated computational analysis using gene prediction method: Protein Homology.; dithiobiotin synthetase complement(1735793..1736488) Escherichia coli JJ1886 17430529 YP_008721739.1 CDS P423_08535 NC_022648.1 1736613 1737833 R mlc, controls the expression of genes involved in the phosphotransferase and phosphoenolpyruvate systems, regulates genes involved in the uptake of sugars; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1736613..1737833) Escherichia coli JJ1886 17430530 YP_008721740.1 CDS P423_08540 NC_022648.1 1737968 1738861 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(1737968..1738861) Escherichia coli JJ1886 17430531 YP_008721741.1 CDS P423_08545 NC_022648.1 1738968 1740221 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1738968..1740221 Escherichia coli JJ1886 17430532 YP_008721742.1 CDS P423_08550 NC_022648.1 1740618 1740953 D required for growth and survival under moderately acid conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; acid-shock protein 1740618..1740953 Escherichia coli JJ1886 17430533 YP_008721743.1 CDS P423_08555 NC_022648.1 1741046 1741129 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1741046..1741129 Escherichia coli JJ1886 17430534 YP_008721744.1 CDS P423_08560 NC_022648.1 1741229 1742050 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine protease 1741229..1742050 Escherichia coli JJ1886 17430535 YP_008721745.1 CDS P423_08565 NC_022648.1 1742089 1742418 R with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(1742089..1742418) Escherichia coli JJ1886 17430536 YP_008721746.1 CDS P423_08570 NC_022648.1 1742405 1742770 R with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(1742405..1742770) Escherichia coli JJ1886 17430537 YP_008721747.1 CDS tqsA NC_022648.1 1743182 1744216 D transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; pheromone autoinducer 2 transporter 1743182..1744216 Escherichia coli JJ1886 17430538 YP_008721748.1 CDS pntB NC_022648.1 1744241 1745629 R catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridine nucleotide transhydrogenase complement(1744241..1745629) Escherichia coli JJ1886 17430539 YP_008721749.1 CDS pntA NC_022648.1 1745640 1747172 R forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P) transhydrogenase subunit alpha complement(1745640..1747172) Escherichia coli JJ1886 17430540 YP_008721750.1 CDS P423_08590 NC_022648.1 1747696 1748640 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1747696..1748640 Escherichia coli JJ1886 17430541 YP_008721751.1 CDS P423_08595 NC_022648.1 1748826 1750208 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:ornithine antiporter 1748826..1750208 Escherichia coli JJ1886 17430542 YP_008721752.1 CDS P423_08600 NC_022648.1 1750245 1750967 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydromonapterin reductase 1750245..1750967 Escherichia coli JJ1886 17430543 YP_008721753.1 CDS P423_08605 NC_022648.1 1750964 1751299 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1750964..1751299) Escherichia coli JJ1886 17430544 YP_008721754.1 CDS P423_08610 NC_022648.1 1751428 1752147 D response regulator in two-component regulatory system with RstB; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1751428..1752147 Escherichia coli JJ1886 17430545 YP_008721755.1 CDS P423_08615 NC_022648.1 1752151 1753452 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein RstB 1752151..1753452 Escherichia coli JJ1886 17430546 YP_008721756.1 CDS P423_08620 NC_022648.1 1753516 1754457 D binds to DNA replication terminator sequences to prevent passage of replication forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 1753516..1754457 Escherichia coli JJ1886 17430547 YP_008721757.1 CDS fumC NC_022648.1 1754454 1755857 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase complement(1754454..1755857) Escherichia coli JJ1886 17430548 YP_008721758.1 CDS P423_08630 NC_022648.1 1756000 1757646 R catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase complement(1756000..1757646) Escherichia coli JJ1886 17430549 YP_008721759.1 CDS P423_08635 NC_022648.1 1757845 1759020 D catalyzes the formation of of fructose 6-phosphate from mannose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-6-phosphate isomerase 1757845..1759020 Escherichia coli JJ1886 17430550 YP_008721760.1 CDS P423_08640 NC_022648.1 1759121 1760629 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1759121..1760629 Escherichia coli JJ1886 17430551 YP_008721761.1 CDS P423_08650 NC_022648.1 1763348 1765159 R Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-glucuronidase complement(1763348..1765159) Escherichia coli JJ1886 17433815 YP_008721762.1 CDS P423_08655 NC_022648.1 1765549 1766139 R Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator complement(1765549..1766139) Escherichia coli JJ1886 17430554 YP_008721763.1 CDS P423_08660 NC_022648.1 1766368 1767135 R Acts on the hydroxyl group at position 7 of the steroid frame; Derived by automated computational analysis using gene prediction method: Protein Homology.; 7-alpha-hydroxysteroid dehydrogenase complement(1766368..1767135) Escherichia coli JJ1886 17430555 YP_008721764.1 CDS P423_08665 NC_022648.1 1767247 1768275 R regulates malXY which are involved in maltose-glucose transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator complement(1767247..1768275) Escherichia coli JJ1886 17430556 YP_008721765.1 CDS P423_08670 NC_022648.1 1768450 1770042 D phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS maltose transporter subunit IICB 1768450..1770042 Escherichia coli JJ1886 17430557 YP_008721766.1 CDS P423_08675 NC_022648.1 1770052 1771224 D catalyzes the formation of homocysteine and pyruvate from cystathionine; also acts a a negative regulator for the mal regulon but interacting with the transcriptional activator MalT; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase 1770052..1771224 Escherichia coli JJ1886 17430558 YP_008721767.1 CDS P423_08680 NC_022648.1 1771328 1772329 D Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine deaminase 1771328..1772329 Escherichia coli JJ1886 17430559 YP_008721768.1 CDS P423_08685 NC_022648.1 1772365 1773405 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1772365..1773405) Escherichia coli JJ1886 17430560 YP_008721769.1 CDS P423_08690 NC_022648.1 1773588 1773773 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1773588..1773773 Escherichia coli JJ1886 17430561 YP_008721770.1 CDS P423_08695 NC_022648.1 1773862 1774260 D YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; Derived by automated computational analysis using gene prediction method: Protein Homology.; oriC-binding nucleoid-associated protein 1773862..1774260 Escherichia coli JJ1886 17430562 YP_008721771.1 CDS P423_08700 NC_022648.1 1774346 1774786 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1774346..1774786 Escherichia coli JJ1886 17430563 YP_008721772.1 CDS P423_08705 NC_022648.1 1774863 1775444 D Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transport complex RsxE subunit 1774863..1775444 Escherichia coli JJ1886 17430564 YP_008721773.1 CDS P423_08710 NC_022648.1 1775444 1776022 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter RnfD 1775444..1776022 Escherichia coli JJ1886 17430565 YP_008721774.1 CDS P423_08715 NC_022648.1 1776015 1778435 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter RnfC 1776015..1778435 Escherichia coli JJ1886 17430566 YP_008721775.1 CDS rnfD NC_022648.1 1778436 1779494 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter RnfG 1778436..1779494 Escherichia coli JJ1886 17430567 YP_008721776.1 CDS P423_08725 NC_022648.1 1779498 1780118 D part of membrane-bound complex hought to be involved in electron transport to nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transport complex protein RsxA 1779498..1780118 Escherichia coli JJ1886 17430568 YP_008721777.1 CDS P423_08730 NC_022648.1 1780122 1780817 D Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor G 1780122..1780817 Escherichia coli JJ1886 17430569 YP_008721778.1 CDS P423_08735 NC_022648.1 1780817 1781452 D DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease IV 1780817..1781452 Escherichia coli JJ1886 17430570 YP_008721779.1 CDS P423_08740 NC_022648.1 1781580 1781780 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1781580..1781780 Escherichia coli JJ1886 17430571 YP_008721780.1 CDS tppB NC_022648.1 1782063 1783565 D mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1782063..1783565 Escherichia coli JJ1886 17430572 YP_008721781.1 CDS P423_08750 NC_022648.1 1783671 1784276 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathionine S-transferase 1783671..1784276 Escherichia coli JJ1886 17430573 YP_008721782.1 CDS P423_08755 NC_022648.1 1784320 1785180 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxamine kinase complement(1784320..1785180) Escherichia coli JJ1886 17430574 YP_008721783.1 CDS P423_08760 NC_022648.1 1785242 1786516 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosyl-tRNA synthetase complement(1785242..1786516) Escherichia coli JJ1886 17430575 YP_008721784.1 CDS P423_08765 NC_022648.1 1786645 1787301 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxamine 5'-phosphate oxidase complement(1786645..1787301) Escherichia coli JJ1886 17430576 YP_008721785.1 CDS P423_08770 NC_022648.1 1787360 1787689 R MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme inhibitor complement(1787360..1787689) Escherichia coli JJ1886 17430577 YP_008721786.1 CDS anmK NC_022648.1 1787787 1788896 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; Derived by automated computational analysis using gene prediction method: Protein Homology.; anhydro-N-acetylmuramic acid kinase complement(1787787..1788896) Escherichia coli JJ1886 17430578 YP_008721787.1 CDS P423_08780 NC_022648.1 1789170 1789637 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein pcp 1789170..1789637 Escherichia coli JJ1886 17430579 YP_008721788.1 CDS P423_08785 NC_022648.1 1789684 1790124 R Transcription regulator that can both activate or repress expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; MarR family transcriptional regulator complement(1789684..1790124) Escherichia coli JJ1886 17430580 YP_008721789.1 CDS P423_08790 NC_022648.1 1790319 1790555 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1790319..1790555 Escherichia coli JJ1886 17430581 YP_008721790.1 CDS P423_08795 NC_022648.1 1790558 1791415 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1790558..1791415 Escherichia coli JJ1886 17430582 YP_008721791.1 CDS P423_08800 NC_022648.1 1791415 1793427 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fusaric acid resistance protein 1791415..1793427 Escherichia coli JJ1886 17430583 YP_008721792.1 CDS P423_08805 NC_022648.1 1793428 1793964 R SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase complement(1793428..1793964) Escherichia coli JJ1886 17430584 YP_008721793.1 CDS P423_08810 NC_022648.1 1794030 1794926 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1794030..1794926) Escherichia coli JJ1886 17430585 YP_008721794.1 CDS P423_08815 NC_022648.1 1794975 1795352 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1794975..1795352) Escherichia coli JJ1886 17430586 YP_008721795.1 CDS P423_08820 NC_022648.1 1795401 1795916 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 1795401..1795916 Escherichia coli JJ1886 17430587 YP_008721796.1 CDS P423_08825 NC_022648.1 1795953 1797050 D FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-ethylmaleimide reductase 1795953..1797050 Escherichia coli JJ1886 17430588 YP_008721797.1 CDS P423_08830 NC_022648.1 1797131 1797538 D Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glyoxalase I 1797131..1797538 Escherichia coli JJ1886 17430589 YP_008721798.1 CDS P423_08835 NC_022648.1 1797641 1798288 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease T 1797641..1798288 Escherichia coli JJ1886 17430590 YP_008721799.1 CDS P423_08840 NC_022648.1 1798660 1799007 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin complement(1798660..1799007) Escherichia coli JJ1886 17430591 YP_008721800.1 CDS P423_08845 NC_022648.1 1799342 1800169 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 1799342..1800169 Escherichia coli JJ1886 17430592 YP_008721801.1 CDS P423_08850 NC_022648.1 1800297 1800878 D SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase 1800297..1800878 Escherichia coli JJ1886 17430593 YP_008721802.1 CDS P423_08855 NC_022648.1 1801024 1802193 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(1801024..1802193) Escherichia coli JJ1886 17430594 YP_008721803.1 CDS P423_08860 NC_022648.1 1802359 1802448 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1802359..1802448) Escherichia coli JJ1886 17430595 YP_008721804.1 CDS P423_08865 NC_022648.1 1802747 1803772 D binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1802747..1803772 Escherichia coli JJ1886 17430596 YP_008721805.1 CDS P423_08870 NC_022648.1 1803769 1804701 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(1803769..1804701) Escherichia coli JJ1886 17430597 YP_008721806.1 CDS P423_08875 NC_022648.1 1804814 1806025 D uncharacterized member of the major facilitator superfamily (MFS); Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1804814..1806025 Escherichia coli JJ1886 17430598 YP_008721807.1 CDS P423_08880 NC_022648.1 1806316 1807464 D catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclopropane fatty acyl phospholipid synthase 1806316..1807464 Escherichia coli JJ1886 17430599 YP_008721808.1 CDS P423_08885 NC_022648.1 1807504 1808145 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; Derived by automated computational analysis using gene prediction method: Protein Homology.; riboflavin synthase subunit alpha complement(1807504..1808145) Escherichia coli JJ1886 17430600 YP_008721809.1 CDS P423_08890 NC_022648.1 1808360 1809733 D NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1808360..1809733 Escherichia coli JJ1886 17430601 YP_008721810.1 CDS P423_08895 NC_022648.1 1809774 1811030 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1809774..1811030) Escherichia coli JJ1886 17430602 YP_008721811.1 CDS P423_08910 NC_022648.1 1811604 1811909 D Derived by automated computational analysis using gene prediction method: Protein Homology.; monooxygenase 1811604..1811909 Escherichia coli JJ1886 17430605 YP_008721812.1 CDS P423_08915 NC_022648.1 1812035 1813639 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1812035..1813639 Escherichia coli JJ1886 17430606 YP_008721813.1 CDS P423_08920 NC_022648.1 1813651 1814463 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1813651..1814463) Escherichia coli JJ1886 17430607 YP_008721814.1 CDS P423_08925 NC_022648.1 1814467 1815252 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate reductase cytochrome B complement(1814467..1815252) Escherichia coli JJ1886 17430608 YP_008721815.1 CDS P423_08930 NC_022648.1 1815249 1815968 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin complement(1815249..1815968) Escherichia coli JJ1886 17430609 YP_008721816.1 CDS P423_08935 NC_022648.1 1815981 1816628 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1815981..1816628) Escherichia coli JJ1886 17430610 YP_008721817.1 CDS P423_08940 NC_022648.1 1816632 1818734 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1816632..1818734) Escherichia coli JJ1886 17430611 YP_008721818.1 CDS P423_08945 NC_022648.1 1818755 1819381 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1818755..1819381) Escherichia coli JJ1886 17430612 YP_008721819.1 CDS P423_08950 NC_022648.1 1819837 1820046 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1819837..1820046) Escherichia coli JJ1886 17430613 YP_008721820.1 CDS P423_08955 NC_022648.1 1820603 1822015 D catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate kinase 1820603..1822015 Escherichia coli JJ1886 17430614 YP_008721821.1 CDS P423_08960 NC_022648.1 1822326 1822562 D major outer membrane lipoprotein; interacts with peptidoglycan to maintain the integrity of the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein lipoprotein 1822326..1822562 Escherichia coli JJ1886 17430615 YP_008721822.1 CDS P423_08965 NC_022648.1 1822625 1823629 R catalyzes the formation of a meso-diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link in peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein L,D-transpeptidase complement(1822625..1823629) Escherichia coli JJ1886 17430616 YP_008721823.1 CDS P423_08970 NC_022648.1 1823777 1824193 R Acts with SufS to catalyze the formation of L-alanine from L-cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desufuration protein SufE complement(1823777..1824193) Escherichia coli JJ1886 17430617 YP_008721824.1 CDS P423_08975 NC_022648.1 1824206 1825426 R Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional cysteine desulfurase/selenocysteine lyase complement(1824206..1825426) Escherichia coli JJ1886 17430618 YP_008721825.1 CDS P423_08980 NC_022648.1 1825423 1826694 R with SufBC activates cysteine desulfurase SufS; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase activator complex subunit SufD complement(1825423..1826694) Escherichia coli JJ1886 17430619 YP_008721826.1 CDS sufC NC_022648.1 1826669 1827415 R part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase complement(1826669..1827415) Escherichia coli JJ1886 17430620 YP_008721827.1 CDS P423_08990 NC_022648.1 1827425 1828912 R with SufCD activates cysteine desulfurase SufS; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase activator complex subunit SufB complement(1827425..1828912) Escherichia coli JJ1886 17430621 YP_008721828.1 CDS sufA NC_022648.1 1828921 1829289 R functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster assembly scaffold protein complement(1828921..1829289) Escherichia coli JJ1886 17430622 YP_008721829.1 CDS P423_09000 NC_022648.1 1829838 1830107 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1829838..1830107) Escherichia coli JJ1886 17430623 YP_008721830.1 CDS P423_09005 NC_022648.1 1830126 1830536 R required for efficient enterobactin production; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase complement(1830126..1830536) Escherichia coli JJ1886 17430624 YP_008721831.1 CDS P423_09010 NC_022648.1 1830533 1833589 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1830533..1833589) Escherichia coli JJ1886 17430625 YP_008721832.1 CDS P423_09015 NC_022648.1 1833803 1834915 D YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1833803..1834915 Escherichia coli JJ1886 17430626 YP_008721833.1 CDS P423_09020 NC_022648.1 1835344 1835700 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1835344..1835700 Escherichia coli JJ1886 17430627 YP_008721834.1 CDS P423_09025 NC_022648.1 1835800 1837014 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1835800..1837014 Escherichia coli JJ1886 17430628 YP_008721835.1 CDS P423_09030 NC_022648.1 1837241 1838506 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1837241..1838506 Escherichia coli JJ1886 17430629 YP_008721836.1 CDS P423_09035 NC_022648.1 1838518 1839384 D YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate 5-dehydrogenase 1838518..1839384 Escherichia coli JJ1886 17430630 YP_008721837.1 CDS P423_09040 NC_022648.1 1839415 1840173 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-dehydroquinate dehydratase 1839415..1840173 Escherichia coli JJ1886 17430631 YP_008721838.1 CDS P423_09045 NC_022648.1 1840320 1841915 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1840320..1841915 Escherichia coli JJ1886 17430632 YP_008721839.1 CDS P423_09050 NC_022648.1 1841929 1843080 D may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase 1841929..1843080 Escherichia coli JJ1886 17430633 YP_008721840.1 CDS P423_09055 NC_022648.1 1843123 1844034 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(1843123..1844034) Escherichia coli JJ1886 17430634 YP_008721841.1 CDS P423_09060 NC_022648.1 1844350 1845114 D required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixB 1844350..1845114 Escherichia coli JJ1886 17430635 YP_008721842.1 CDS fixB NC_022648.1 1845134 1846072 D involved in electron transfer during carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit alpha 1845134..1846072 Escherichia coli JJ1886 17430636 YP_008721843.1 CDS P423_09070 NC_022648.1 1846127 1847416 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase FixC 1846127..1847416 Escherichia coli JJ1886 17430637 YP_008721844.1 CDS P423_09075 NC_022648.1 1847413 1847706 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin ydiT 1847413..1847706 Escherichia coli JJ1886 17430638 YP_008721845.1 CDS P423_09080 NC_022648.1 1847709 1849409 D acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; short chain acyl-CoA synthetase 1847709..1849409 Escherichia coli JJ1886 17430639 YP_008721846.1 CDS P423_09085 NC_022648.1 1849466 1851844 R catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate synthase complement(1849466..1851844) Escherichia coli JJ1886 17430640 YP_008721847.1 CDS P423_09090 NC_022648.1 1852177 1853010 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PEP synthetase regulatory protein 1852177..1853010 Escherichia coli JJ1886 17430641 YP_008721848.1 CDS P423_09095 NC_022648.1 1853167 1854213 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase 1853167..1854213 Escherichia coli JJ1886 17430642 YP_008721849.1 CDS P423_09100 NC_022648.1 1854345 1854536 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1854345..1854536 Escherichia coli JJ1886 17430643 YP_008721850.1 CDS P423_09105 NC_022648.1 1854540 1855976 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1854540..1855976) Escherichia coli JJ1886 17430644 YP_008721851.1 CDS P423_09110 NC_022648.1 1857000 1857464 R Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase complement(1857000..1857464) Escherichia coli JJ1886 17430645 YP_008721852.1 CDS P423_09115 NC_022648.1 1857542 1858291 R ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12-transporter ATPase complement(1857542..1858291) Escherichia coli JJ1886 17430646 YP_008721853.1 CDS btuE NC_022648.1 1858291 1858842 R similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione peroxidase complement(1858291..1858842) Escherichia coli JJ1886 17430647 YP_008721854.1 CDS P423_09125 NC_022648.1 1858905 1859885 R with BtuD and BtuF transports vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; vtamin B12-transporter permease complement(1858905..1859885) Escherichia coli JJ1886 17430648 YP_008721855.1 CDS ihfA NC_022648.1 1859986 1860285 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; Derived by automated computational analysis using gene prediction method: Protein Homology.; integration host factor subunit alpha complement(1859986..1860285) Escherichia coli JJ1886 17430649 YP_008721856.1 CDS pheT NC_022648.1 1860290 1862677 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylalanyl-tRNA synthetase complement(1860290..1862677) Escherichia coli JJ1886 17430650 YP_008721857.1 CDS P423_09140 NC_022648.1 1862692 1863675 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylalanyl-tRNA synthetase complement(1862692..1863675) Escherichia coli JJ1886 17430651 YP_008721858.1 CDS P423_09145 NC_022648.1 1863789 1863884 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1863789..1863884) Escherichia coli JJ1886 17430652 YP_008721859.1 CDS rplT NC_022648.1 1864126 1864482 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L20 complement(1864126..1864482) Escherichia coli JJ1886 17430653 YP_008721860.1 CDS P423_09155 NC_022648.1 1864535 1864732 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L35 complement(1864535..1864732) Escherichia coli JJ1886 17430654 YP_008721861.1 CDS P423_09160 NC_022648.1 1864829 1865263 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; translation initiation factor IF-3 complement(1864829..1865263) Escherichia coli JJ1886 17430655 YP_008721862.1 CDS thrS NC_022648.1 1865375 1867303 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); Derived by automated computational analysis using gene prediction method: Protein Homology.; threonyl-tRNA synthetase complement(1865375..1867303) Escherichia coli JJ1886 17430656 YP_008721863.1 CDS P423_09170 NC_022648.1 1869022 1869129 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1869022..1869129 Escherichia coli JJ1886 17430657 YP_008721864.1 CDS P423_09175 NC_022648.1 1869182 1869940 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1869182..1869940) Escherichia coli JJ1886 17430658 YP_008721865.1 CDS P423_09180 NC_022648.1 1870226 1871155 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphofructokinase 1870226..1871155 Escherichia coli JJ1886 17430659 YP_008721866.1 CDS P423_09185 NC_022648.1 1871256 1871546 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1871256..1871546 Escherichia coli JJ1886 17430660 YP_008721867.1 CDS P423_09190 NC_022648.1 1871652 1872512 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1871652..1872512 Escherichia coli JJ1886 17430661 YP_008721868.1 CDS P423_09195 NC_022648.1 1872553 1873089 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1872553..1873089) Escherichia coli JJ1886 17430662 YP_008721869.1 CDS P423_09200 NC_022648.1 1873236 1873904 D YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-deoxyglucose-6-phosphatase 1873236..1873904 Escherichia coli JJ1886 17430663 YP_008721870.1 CDS P423_09205 NC_022648.1 1874068 1874658 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1874068..1874658 Escherichia coli JJ1886 17430664 YP_008721871.1 CDS P423_09210 NC_022648.1 1874791 1876182 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-cystine transporter tcyP 1874791..1876182 Escherichia coli JJ1886 17430665 YP_008721872.1 CDS P423_09215 NC_022648.1 1876229 1876471 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division modulator complement(1876229..1876471) Escherichia coli JJ1886 17430666 YP_008721873.1 CDS katE NC_022648.1 1876675 1878936 D Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroperoxidase II 1876675..1878936 Escherichia coli JJ1886 17430667 YP_008721874.1 CDS P423_09225 NC_022648.1 1878983 1879741 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1878983..1879741) Escherichia coli JJ1886 17430668 YP_008721875.1 CDS P423_09230 NC_022648.1 1879754 1881106 R catalyzes the fromation of N-acetyl-D-glucosamine and N-acetyl-D-glucosamine-6-phosphate from diacetylchitobiose-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diacetylchitobiose-6-phosphate hydrolase complement(1879754..1881106) Escherichia coli JJ1886 17430669 YP_008721876.1 CDS P423_09235 NC_022648.1 1881209 1882051 R represses the celABCDF-ydjC operon involved in carbon uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1881209..1882051) Escherichia coli JJ1886 17430670 YP_008721877.1 CDS P423_09240 NC_022648.1 1882059 1882409 R catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIA complement(1882059..1882409) Escherichia coli JJ1886 17430671 YP_008721878.1 CDS P423_09245 NC_022648.1 1882460 1883818 R catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIC complement(1882460..1883818) Escherichia coli JJ1886 17430672 YP_008721879.1 CDS P423_09250 NC_022648.1 1883903 1884223 R catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIB complement(1883903..1884223) Escherichia coli JJ1886 17430673 YP_008721880.1 CDS P423_09255 NC_022648.1 1884522 1884860 R osmotically-inducible lipoprotein E; activator of ntr-like gene protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1884522..1884860) Escherichia coli JJ1886 17430674 YP_008721881.1 CDS nadE NC_022648.1 1885062 1885889 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD synthetase 1885062..1885889 Escherichia coli JJ1886 17430675 YP_008721882.1 CDS P423_09270 NC_022648.1 1886119 1887006 D 3' incision activity; acts with UvrC; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotide excision repair endonuclease 1886119..1887006 Escherichia coli JJ1886 17430677 YP_008721883.1 CDS P423_09275 NC_022648.1 1886966 1887541 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1886966..1887541) Escherichia coli JJ1886 17430678 YP_008721884.1 CDS P423_09280 NC_022648.1 1887744 1888229 R periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1887744..1888229) Escherichia coli JJ1886 17430679 YP_008721885.1 CDS P423_09285 NC_022648.1 1888559 1889527 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinylglutamate desuccinylase complement(1888559..1889527) Escherichia coli JJ1886 17430680 YP_008721886.1 CDS P423_09290 NC_022648.1 1889520 1890863 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinylarginine dihydrolase complement(1889520..1890863) Escherichia coli JJ1886 17430681 YP_008721887.1 CDS astD NC_022648.1 1890860 1892338 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinylglutamate-semialdehyde dehydrogenase complement(1890860..1892338) Escherichia coli JJ1886 17430682 YP_008721888.1 CDS P423_09300 NC_022648.1 1892335 1893369 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine succinyltransferase complement(1892335..1893369) Escherichia coli JJ1886 17430683 YP_008721889.1 CDS P423_09305 NC_022648.1 1893366 1894586 R catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylornithine aminotransferase complement(1893366..1894586) Escherichia coli JJ1886 17430684 YP_008721890.1 CDS P423_09315 NC_022648.1 1895032 1895838 D removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease III 1895032..1895838 Escherichia coli JJ1886 17430685 YP_008721891.1 CDS P423_09320 NC_022648.1 1896005 1896715 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1896005..1896715 Escherichia coli JJ1886 17430686 YP_008721892.1 CDS P423_09325 NC_022648.1 1896720 1897397 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1896720..1897397 Escherichia coli JJ1886 17430687 YP_008721893.1 CDS P423_09330 NC_022648.1 1897411 1898118 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TVP38/TMEM64 family inner membrane protein ydjZ 1897411..1898118 Escherichia coli JJ1886 17430688 YP_008721894.1 CDS P423_09335 NC_022648.1 1898118 1898666 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1898118..1898666 Escherichia coli JJ1886 17430689 YP_008721895.1 CDS P423_09340 NC_022648.1 1898676 1899842 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1898676..1899842 Escherichia coli JJ1886 17430690 YP_008721896.1 CDS P423_09345 NC_022648.1 1899815 1901350 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine ABC transporter permease 1899815..1901350 Escherichia coli JJ1886 17430691 YP_008721897.1 CDS P423_09350 NC_022648.1 1901350 1902003 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfate ABC transporter ATP-binding protein 1901350..1902003 Escherichia coli JJ1886 17430692 YP_008721898.1 CDS P423_09355 NC_022648.1 1902070 1903377 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate sulfurtransferase 1902070..1903377 Escherichia coli JJ1886 17430693 YP_008721899.1 CDS P423_09360 NC_022648.1 1903386 1904006 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1903386..1904006) Escherichia coli JJ1886 17430694 YP_008721900.1 CDS P423_09365 NC_022648.1 1904093 1904500 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1904093..1904500 Escherichia coli JJ1886 17430695 YP_008721901.1 CDS P423_09370 NC_022648.1 1904466 1904738 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1904466..1904738) Escherichia coli JJ1886 17430696 YP_008721902.1 CDS P423_09375 NC_022648.1 1904974 1906317 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate dehydrogenase 1904974..1906317 Escherichia coli JJ1886 17430697 YP_008721903.1 CDS P423_09380 NC_022648.1 1906394 1908349 R decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase III complement(1906394..1908349) Escherichia coli JJ1886 17430698 YP_008721904.1 CDS P423_09385 NC_022648.1 1908354 1909397 R catalyzes the formation of selenophosphate from selenide and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; selenophosphate synthetase complement(1908354..1909397) Escherichia coli JJ1886 17430699 YP_008721905.1 CDS P423_09390 NC_022648.1 1909514 1910065 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1909514..1910065) Escherichia coli JJ1886 17430700 YP_008721906.1 CDS P423_09395 NC_022648.1 1910226 1912082 D SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 1910226..1912082 Escherichia coli JJ1886 17430701 YP_008721907.1 CDS P423_09400 NC_022648.1 1912198 1912908 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1912198..1912908 Escherichia coli JJ1886 17430702 YP_008721908.1 CDS ansA NC_022648.1 1913040 1914056 D converts asparagine to aspartate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic asparaginase I 1913040..1914056 Escherichia coli JJ1886 17430703 YP_008721909.1 CDS P423_09410 NC_022648.1 1914067 1914708 D catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamidase/pyrazinamidase 1914067..1914708 Escherichia coli JJ1886 17430704 YP_008721910.1 CDS P423_09415 NC_022648.1 1914801 1916159 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(1914801..1916159) Escherichia coli JJ1886 17430705 YP_008721911.1 CDS P423_09420 NC_022648.1 1916277 1917035 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(1916277..1917035) Escherichia coli JJ1886 17430706 YP_008721912.1 CDS P423_09425 NC_022648.1 1917172 1918152 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1917172..1918152) Escherichia coli JJ1886 17430707 YP_008721913.1 CDS P423_09430 NC_022648.1 1918162 1919109 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase complement(1918162..1919109) Escherichia coli JJ1886 17430708 YP_008721914.1 CDS gatY NC_022648.1 1919114 1919950 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(1919114..1919950) Escherichia coli JJ1886 17430709 YP_008721915.1 CDS P423_09440 NC_022648.1 1919971 1921014 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(1919971..1921014) Escherichia coli JJ1886 17430710 YP_008721916.1 CDS P423_09445 NC_022648.1 1921031 1922410 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(1921031..1922410) Escherichia coli JJ1886 17430711 YP_008721917.1 CDS P423_09450 NC_022648.1 1922437 1923513 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(1922437..1923513) Escherichia coli JJ1886 17430712 YP_008721918.1 CDS P423_09455 NC_022648.1 1923883 1924155 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1923883..1924155) Escherichia coli JJ1886 17430713 YP_008721919.1 CDS P423_09460 NC_022648.1 1924197 1924610 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine sulfoxide reductase B complement(1924197..1924610) Escherichia coli JJ1886 17430714 YP_008721920.1 CDS P423_09465 NC_022648.1 1924952 1925947 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glyceraldehyde-3-phosphate dehydrogenase 1924952..1925947 Escherichia coli JJ1886 17430715 YP_008721921.1 CDS P423_09470 NC_022648.1 1926031 1926915 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate 1-epimerase 1926031..1926915 Escherichia coli JJ1886 17430716 YP_008721922.1 CDS P423_09475 NC_022648.1 1926966 1927820 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1926966..1927820) Escherichia coli JJ1886 17430717 YP_008721923.1 CDS P423_09480 NC_022648.1 1927910 1928656 R scaffolding protein for the murein polymerase MrcB and the lytic transglycosylase MltA; Derived by automated computational analysis using gene prediction method: Protein Homology.; MltA-interacting protein MipA complement(1927910..1928656) Escherichia coli JJ1886 17430718 YP_008721924.1 CDS P423_09485 NC_022648.1 1929092 1931026 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PrkA family serine protein kinase 1929092..1931026 Escherichia coli JJ1886 17430719 YP_008721925.1 CDS P423_09490 NC_022648.1 1931139 1932422 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1931139..1932422 Escherichia coli JJ1886 17430720 YP_008721926.1 CDS P423_09495 NC_022648.1 1932569 1934044 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1932569..1934044 Escherichia coli JJ1886 17430721 YP_008721927.1 CDS P423_09500 NC_022648.1 1934225 1935715 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cylase 1934225..1935715 Escherichia coli JJ1886 17430722 YP_008721928.1 CDS P423_09505 NC_022648.1 1935758 1936261 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1935758..1936261 Escherichia coli JJ1886 17430723 YP_008721929.1 CDS P423_09510 NC_022648.1 1936262 1936366 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1936262..1936366) Escherichia coli JJ1886 17430724 YP_008721930.1 CDS P423_09515 NC_022648.1 1936536 1936982 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1936536..1936982 Escherichia coli JJ1886 17430725 YP_008721931.1 CDS P423_09520 NC_022648.1 1936939 1937760 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(1936939..1937760) Escherichia coli JJ1886 17430726 YP_008721932.1 CDS P423_09525 NC_022648.1 1937857 1939038 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1937857..1939038 Escherichia coli JJ1886 17430727 YP_008721933.1 CDS P423_09530 NC_022648.1 1939093 1939440 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1939093..1939440 Escherichia coli JJ1886 17430728 YP_008721934.1 CDS P423_09535 NC_022648.1 1939462 1939716 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1939462..1939716) Escherichia coli JJ1886 17430729 YP_008721935.1 CDS P423_09540 NC_022648.1 1939899 1940924 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 1939899..1940924 Escherichia coli JJ1886 17430730 YP_008721936.1 CDS P423_09545 NC_022648.1 1941191 1941439 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1941191..1941439) Escherichia coli JJ1886 17430731 YP_008721937.1 CDS P423_09550 NC_022648.1 1941587 1941769 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1941587..1941769) Escherichia coli JJ1886 17430732 YP_008721938.1 CDS P423_09555 NC_022648.1 1941773 1942132 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1941773..1942132) Escherichia coli JJ1886 17430733 YP_008721939.1 CDS P423_09560 NC_022648.1 1942305 1942943 R Derived by automated computational analysis using gene prediction method: Protein Homology.; leucine export protein LeuE complement(1942305..1942943) Escherichia coli JJ1886 17430734 YP_008721940.1 CDS P423_09565 NC_022648.1 1943226 1943396 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dehydrogenase 1943226..1943396 Escherichia coli JJ1886 17430735 YP_008721941.1 CDS P423_09570 NC_022648.1 1943486 1944613 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease D complement(1943486..1944613) Escherichia coli JJ1886 17430736 YP_008721942.1 CDS P423_09575 NC_022648.1 1944683 1946368 R Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.; long-chain fatty acid--CoA ligase complement(1944683..1946368) Escherichia coli JJ1886 17430737 YP_008721943.1 CDS P423_09580 NC_022648.1 1946573 1947154 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1946573..1947154) Escherichia coli JJ1886 17430738 YP_008721944.1 CDS P423_09585 NC_022648.1 1947194 1947889 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1947194..1947889) Escherichia coli JJ1886 17430739 YP_008721945.1 CDS P423_09590 NC_022648.1 1947947 1949857 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent helicase complement(1947947..1949857) Escherichia coli JJ1886 17430740 YP_008721946.1 CDS P423_09595 NC_022648.1 1949989 1950333 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease L-PSP 1949989..1950333 Escherichia coli JJ1886 17430741 YP_008721947.1 CDS P423_09600 NC_022648.1 1950755 1951054 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1950755..1951054 Escherichia coli JJ1886 17430742 YP_008721948.1 CDS P423_09605 NC_022648.1 1951174 1951353 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1951174..1951353) Escherichia coli JJ1886 17430743 YP_008721949.1 CDS pabB NC_022648.1 1951427 1952788 D para-aminobenzoate synthase component 1; catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and L-glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminodeoxychorismate synthase subunit I 1951427..1952788 Escherichia coli JJ1886 17430744 YP_008721950.1 CDS P423_09615 NC_022648.1 1952792 1953370 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX hydrolase 1952792..1953370 Escherichia coli JJ1886 17430745 YP_008721951.1 CDS P423_09620 NC_022648.1 1953554 1954918 D catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase 1953554..1954918 Escherichia coli JJ1886 17430746 YP_008721952.1 CDS P423_09625 NC_022648.1 1955049 1956647 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase 1955049..1956647 Escherichia coli JJ1886 17430747 YP_008721953.1 CDS P423_09630 NC_022648.1 1956651 1958207 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1956651..1958207) Escherichia coli JJ1886 17430748 YP_008721954.1 CDS P423_09635 NC_022648.1 1958671 1959642 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIA transfers a phosphoryl group to subunit IIB; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IIAB 1958671..1959642 Escherichia coli JJ1886 17430749 YP_008721955.1 CDS P423_09640 NC_022648.1 1959705 1960505 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IIC 1959705..1960505 Escherichia coli JJ1886 17430750 YP_008721956.1 CDS P423_09645 NC_022648.1 1960518 1961369 D hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IID 1960518..1961369 Escherichia coli JJ1886 17430751 YP_008721957.1 CDS P423_09650 NC_022648.1 1961424 1961882 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1961424..1961882 Escherichia coli JJ1886 17430752 YP_008721958.1 CDS P423_09655 NC_022648.1 1962311 1962877 D membrane protein YebN; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1962311..1962877 Escherichia coli JJ1886 17430753 YP_008721959.1 CDS rrmA NC_022648.1 1962874 1963683 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(1962874..1963683) Escherichia coli JJ1886 17430754 YP_008721960.1 CDS P423_09665 NC_022648.1 1963849 1964058 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator complement(1963849..1964058) Escherichia coli JJ1886 17430755 YP_008721961.1 CDS P423_09670 NC_022648.1 1964071 1964214 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1964071..1964214) Escherichia coli JJ1886 17430756 YP_008721962.1 CDS P423_09675 NC_022648.1 1964884 1965171 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1964884..1965171) Escherichia coli JJ1886 17430757 YP_008721963.1 CDS P423_09680 NC_022648.1 1965246 1965389 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoPQ regulatory protein complement(1965246..1965389) Escherichia coli JJ1886 17430758 YP_008721964.1 CDS P423_09685 NC_022648.1 1965548 1965787 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1965548..1965787 Escherichia coli JJ1886 17430759 YP_008721965.1 CDS P423_09690 NC_022648.1 1965931 1966722 R regulates the genes involved in 2-keto-3-deoxy gluconate transport and catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1965931..1966722) Escherichia coli JJ1886 17430760 YP_008721966.1 CDS P423_09695 NC_022648.1 1966899 1968272 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug MFS transporter 1966899..1968272 Escherichia coli JJ1886 17430761 YP_008721967.1 CDS P423_09700 NC_022648.1 1968318 1969199 R metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein HtpX complement(1968318..1969199) Escherichia coli JJ1886 17430762 YP_008721968.1 CDS P423_09705 NC_022648.1 1969391 1971439 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxy-terminal protease complement(1969391..1971439) Escherichia coli JJ1886 17430763 YP_008721969.1 CDS P423_09710 NC_022648.1 1971459 1972157 R affects solute and DNA transport through an unknown mechanism; Derived by automated computational analysis using gene prediction method: Protein Homology.; prop expression regulator complement(1971459..1972157) Escherichia coli JJ1886 17430764 YP_008721970.1 CDS P423_09715 NC_022648.1 1972254 1972751 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Free methionine-R-sulfoxide reductase complement(1972254..1972751) Escherichia coli JJ1886 17430765 YP_008721971.1 CDS P423_09720 NC_022648.1 1972881 1974164 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1972881..1974164 Escherichia coli JJ1886 17430766 YP_008721972.1 CDS P423_09725 NC_022648.1 1974133 1976766 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1974133..1976766 Escherichia coli JJ1886 17430767 YP_008721973.1 CDS yebU NC_022648.1 1976840 1978285 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; rRNA methyltransferase 1976840..1978285 Escherichia coli JJ1886 17430768 YP_008721974.1 CDS P423_09735 NC_022648.1 1978402 1978638 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1978402..1978638 Escherichia coli JJ1886 17430769 YP_008721975.1 CDS P423_09740 NC_022648.1 1978659 1978934 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1978659..1978934 Escherichia coli JJ1886 17430770 YP_008721976.1 CDS P423_09745 NC_022648.1 1978935 1979591 R Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein phosphatase complement(1978935..1979591) Escherichia coli JJ1886 17430771 YP_008721977.1 CDS P423_09750 NC_022648.1 1979816 1979968 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1979816..1979968) Escherichia coli JJ1886 17430772 YP_008721978.1 CDS P423_09755 NC_022648.1 1979986 1980327 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1979986..1980327) Escherichia coli JJ1886 17430773 YP_008721979.1 CDS P423_09760 NC_022648.1 1980340 1981212 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1980340..1981212) Escherichia coli JJ1886 17430774 YP_008721980.1 CDS P423_09765 NC_022648.1 1981216 1981590 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1981216..1981590) Escherichia coli JJ1886 17430775 YP_008721981.1 CDS P423_09770 NC_022648.1 1981729 1981959 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit theta 1981729..1981959 Escherichia coli JJ1886 17430776 YP_008721982.1 CDS P423_09775 NC_022648.1 1982061 1982717 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1982061..1982717 Escherichia coli JJ1886 17430777 YP_008721983.1 CDS P423_09780 NC_022648.1 1982741 1983403 D 3'-5' exonuclease activity on single or double-strand DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease X 1982741..1983403 Escherichia coli JJ1886 17430778 YP_008721984.1 CDS P423_09785 NC_022648.1 1983400 1985460 R PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease complement(1983400..1985460) Escherichia coli JJ1886 17430779 YP_008721985.1 CDS P423_09790 NC_022648.1 1985669 1986328 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1985669..1986328) Escherichia coli JJ1886 17430780 YP_008721986.1 CDS P423_09795 NC_022648.1 1986388 1986498 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1986388..1986498 Escherichia coli JJ1886 17430781 YP_008721987.1 CDS P423_09800 NC_022648.1 1986655 1987011 R secreted protein; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1986655..1987011) Escherichia coli JJ1886 17430782 YP_008721988.1 CDS P423_09805 NC_022648.1 1987078 1987368 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA damage-inducible protein YebG complement(1987078..1987368) Escherichia coli JJ1886 17430783 YP_008721989.1 CDS P423_09810 NC_022648.1 1987502 1988680 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylglycinamide formyltransferase 1987502..1988680 Escherichia coli JJ1886 17430784 YP_008721990.1 CDS P423_09815 NC_022648.1 1988736 1989377 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketohydroxyglutarate aldolase complement(1988736..1989377) Escherichia coli JJ1886 17430785 YP_008721991.1 CDS P423_09820 NC_022648.1 1989414 1991225 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphogluconate dehydratase complement(1989414..1991225) Escherichia coli JJ1886 17430786 YP_008721992.1 CDS P423_09825 NC_022648.1 1991460 1992935 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate 1-dehydrogenase complement(1991460..1992935) Escherichia coli JJ1886 17430787 YP_008721993.1 CDS P423_09830 NC_022648.1 1993101 1993250 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1993101..1993250) Escherichia coli JJ1886 17430788 YP_008721994.1 CDS P423_09835 NC_022648.1 1993273 1994142 D Represses the expression of the zwf, eda, glp and gap; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1993273..1994142 Escherichia coli JJ1886 17430789 YP_008721995.1 CDS P423_09840 NC_022648.1 1994270 1995712 D catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate kinase 1994270..1995712 Escherichia coli JJ1886 17430790 YP_008721996.1 CDS P423_09845 NC_022648.1 1995844 1996815 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(1995844..1996815) Escherichia coli JJ1886 17430791 YP_008721997.1 CDS P423_09850 NC_022648.1 1996934 1998256 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase complement(1996934..1998256) Escherichia coli JJ1886 17430792 YP_008721998.1 CDS znuA NC_022648.1 1998272 1999219 R involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc ABC transporter substrate-binding protein complement(1998272..1999219) Escherichia coli JJ1886 17430793 YP_008721999.1 CDS znuC NC_022648.1 1999283 2000038 D involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; zinc transporter 1999283..2000038 Escherichia coli JJ1886 17430794 YP_008722000.1 CDS znuB NC_022648.1 2000035 2000820 D involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter 2000035..2000820 Escherichia coli JJ1886 17430795 YP_008722001.1 CDS P423_09870 NC_022648.1 2001014 2001736 R Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase complement(2001014..2001736) Escherichia coli JJ1886 17430796 YP_008722002.1 CDS P423_09875 NC_022648.1 2001841 2002014 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(2001841..2002014) Escherichia coli JJ1886 17430797 YP_008722003.1 CDS P423_09880 NC_022648.1 2002119 2002307 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2002119..2002307) Escherichia coli JJ1886 17430798 YP_008722004.1 CDS ruvB NC_022648.1 2002472 2003482 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction DNA helicase RuvB complement(2002472..2003482) Escherichia coli JJ1886 17430799 YP_008722005.1 CDS ruvA NC_022648.1 2003491 2004102 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction DNA helicase RuvA complement(2003491..2004102) Escherichia coli JJ1886 17430800 YP_008722006.1 CDS P423_09895 NC_022648.1 2004377 2004979 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2004377..2004979 Escherichia coli JJ1886 17430801 YP_008722007.1 CDS ruvC NC_022648.1 2004981 2005502 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction resolvase complement(2004981..2005502) Escherichia coli JJ1886 17430802 YP_008722008.1 CDS P423_09905 NC_022648.1 2005537 2006277 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2005537..2006277) Escherichia coli JJ1886 17430803 YP_008722009.1 CDS nudB NC_022648.1 2006306 2006749 R catalyzes the formation of dihydroneopterin phosphate from dihydroneopterin triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroneopterin triphosphate pyrophosphatase complement(2006306..2006749) Escherichia coli JJ1886 17430804 YP_008722010.1 CDS P423_09915 NC_022648.1 2006751 2008523 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartyl-tRNA synthetase complement(2006751..2008523) Escherichia coli JJ1886 17430805 YP_008722011.1 CDS P423_09920 NC_022648.1 2008833 2009399 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 2008833..2009399 Escherichia coli JJ1886 17430806 YP_008722012.1 CDS P423_09925 NC_022648.1 2009396 2010214 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2009396..2010214 Escherichia coli JJ1886 17430807 YP_008722013.1 CDS P423_09930 NC_022648.1 2010267 2010662 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2010267..2010662 Escherichia coli JJ1886 17430808 YP_008722014.1 CDS P423_09935 NC_022648.1 2010703 2011446 D catalyzes the conversion of 5-methoxyuridine to uridine-5-oxyacetic acid in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; rRNA cytosine-C5-methyltransferase 2010703..2011446 Escherichia coli JJ1886 17430809 YP_008722015.1 CDS P423_09940 NC_022648.1 2011443 2012414 D catalyzes the conversion of 5-hydroxyuridine to 5-methoxyuridine in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase 2011443..2012414 Escherichia coli JJ1886 17430810 YP_008722016.1 CDS bisC NC_022648.1 2012450 2014879 R catalyzes the formation of biotin from biotin sulfoxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin sulfoxide reductase complement(2012450..2014879) Escherichia coli JJ1886 17430811 YP_008722017.1 CDS P423_09950 NC_022648.1 2014904 2016004 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C complement(2014904..2016004) Escherichia coli JJ1886 17430812 YP_008722018.1 CDS P423_09955 NC_022648.1 2016392 2017138 R Derived by automated computational analysis using gene prediction method: Protein Homology.; copper homeostasis protein CutC complement(2016392..2017138) Escherichia coli JJ1886 17430813 YP_008722019.1 CDS P423_09960 NC_022648.1 2017152 2017724 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2017152..2017724) Escherichia coli JJ1886 17430814 YP_008722020.1 CDS P423_09965 NC_022648.1 2017934 2019667 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arginyl-tRNA synthetase 2017934..2019667 Escherichia coli JJ1886 17430815 YP_008722021.1 CDS P423_09970 NC_022648.1 2019720 2020112 R Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar protein flhE complement(2019720..2020112) Escherichia coli JJ1886 17430816 YP_008722022.1 CDS flhA NC_022648.1 2020112 2022190 R membrane protein involved in the flagellar export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhA complement(2020112..2022190) Escherichia coli JJ1886 17430817 YP_008722023.1 CDS flhB NC_022648.1 2022183 2023331 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhB complement(2022183..2023331) Escherichia coli JJ1886 17430818 YP_008722024.1 CDS P423_09985 NC_022648.1 2023520 2024164 R cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheZ complement(2023520..2024164) Escherichia coli JJ1886 17430819 YP_008722025.1 CDS P423_09990 NC_022648.1 2024175 2024564 R chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY complement(2024175..2024564) Escherichia coli JJ1886 17430820 YP_008722026.1 CDS P423_09995 NC_022648.1 2024579 2025628 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein complement(2024579..2025628) Escherichia coli JJ1886 17430821 YP_008722027.1 CDS P423_10000 NC_022648.1 2025631 2026491 R methylates the MCP; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheR complement(2025631..2026491) Escherichia coli JJ1886 17430822 YP_008722028.1 CDS P423_10005 NC_022648.1 2026782 2028443 R serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein complement(2026782..2028443) Escherichia coli JJ1886 17430823 YP_008722029.1 CDS P423_10010 NC_022648.1 2028588 2029091 R Derived by automated computational analysis using gene prediction method: Protein Homology.; purine-binding chemotaxis protein complement(2028588..2029091) Escherichia coli JJ1886 17430824 YP_008722030.1 CDS P423_10015 NC_022648.1 2029112 2031076 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheA complement(2029112..2031076) Escherichia coli JJ1886 17430825 YP_008722031.1 CDS motB NC_022648.1 2031081 2032007 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor protein MotB complement(2031081..2032007) Escherichia coli JJ1886 17430826 YP_008722032.1 CDS P423_10025 NC_022648.1 2032004 2032891 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor protein MotA complement(2032004..2032891) Escherichia coli JJ1886 17430827 YP_008722033.1 CDS P423_10030 NC_022648.1 2033018 2033596 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(2033018..2033596) Escherichia coli JJ1886 17430828 YP_008722034.1 CDS P423_10035 NC_022648.1 2033599 2033949 R with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional activator FlhD complement(2033599..2033949) Escherichia coli JJ1886 17430829 YP_008722035.1 CDS P423_10040 NC_022648.1 2034729 2035157 D ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein C 2034729..2035157 Escherichia coli JJ1886 17430830 YP_008722036.1 CDS P423_10045 NC_022648.1 2035164 2036588 R Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-6-phosphate synthase complement(2035164..2036588) Escherichia coli JJ1886 17430831 YP_008722037.1 CDS P423_10050 NC_022648.1 2036563 2037363 R biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-6-phosphate phosphatase complement(2036563..2037363) Escherichia coli JJ1886 17430832 YP_008722038.1 CDS araH NC_022648.1 2037530 2038516 R Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose ABC transporter permease complement(2037530..2038516) Escherichia coli JJ1886 17430833 YP_008722039.1 CDS araG NC_022648.1 2038531 2040045 R Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose ABC transporter ATP-binding protein complement(2038531..2040045) Escherichia coli JJ1886 17430834 YP_008722040.1 CDS P423_10065 NC_022648.1 2040115 2041104 R with AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose ABC transporter substrate-binding protein complement(2040115..2041104) Escherichia coli JJ1886 17430835 YP_008722041.1 CDS P423_10070 NC_022648.1 2041899 2042402 D ferritin B; required for virulence in Salmonella; may be involved in repair of damaged Fe-S clusters; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferritin 2041899..2042402 Escherichia coli JJ1886 17430836 YP_008722042.1 CDS P423_10075 NC_022648.1 2042480 2042731 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2042480..2042731) Escherichia coli JJ1886 17430837 YP_008722043.1 CDS P423_10080 NC_022648.1 2043026 2043139 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2043026..2043139) Escherichia coli JJ1886 17430838 YP_008722044.1 CDS P423_10085 NC_022648.1 2043223 2043399 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2043223..2043399) Escherichia coli JJ1886 17430839 YP_008722045.1 CDS P423_10090 NC_022648.1 2043691 2044188 D cytoplasmic iron storage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferritin 2043691..2044188 Escherichia coli JJ1886 17430840 YP_008722046.1 CDS P423_10095 NC_022648.1 2044226 2044465 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2044226..2044465) Escherichia coli JJ1886 17430841 YP_008722047.1 CDS P423_10100 NC_022648.1 2044656 2045867 D tyrosine specific permease; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine transporter TyrP 2044656..2045867 Escherichia coli JJ1886 17430842 YP_008722048.1 CDS P423_10105 NC_022648.1 2045918 2046583 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2045918..2046583) Escherichia coli JJ1886 17430843 YP_008722049.1 CDS P423_10110 NC_022648.1 2047055 2047441 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2047055..2047441) Escherichia coli JJ1886 17430844 YP_008722050.1 CDS P423_10115 NC_022648.1 2047912 2048685 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; late control D family protein complement(2047912..2048685) Escherichia coli JJ1886 17430845 YP_008722051.1 CDS P423_10120 NC_022648.1 2048689 2048901 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2048689..2048901) Escherichia coli JJ1886 17430846 YP_008722052.1 CDS P423_10125 NC_022648.1 2049075 2049497 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2049075..2049497) Escherichia coli JJ1886 17430847 YP_008722053.1 CDS P423_10130 NC_022648.1 2049500 2051140 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2049500..2051140) Escherichia coli JJ1886 17430848 YP_008722054.1 CDS P423_10135 NC_022648.1 2051249 2051530 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2051249..2051530) Escherichia coli JJ1886 17430849 YP_008722055.1 CDS P423_10140 NC_022648.1 2051543 2052055 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phage tail protein complement(2051543..2052055) Escherichia coli JJ1886 17430850 YP_008722056.1 CDS P423_10145 NC_022648.1 2052073 2053575 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail sheath protein complement(2052073..2053575) Escherichia coli JJ1886 17430851 YP_008722057.1 CDS P423_10150 NC_022648.1 2053572 2053961 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2053572..2053961) Escherichia coli JJ1886 17430852 YP_008722058.1 CDS P423_10155 NC_022648.1 2053961 2055145 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2053961..2055145) Escherichia coli JJ1886 17430853 YP_008722059.1 CDS P423_10160 NC_022648.1 2055138 2055764 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2055138..2055764) Escherichia coli JJ1886 17430854 YP_008722060.1 CDS P423_10165 NC_022648.1 2055767 2056687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate assembly protein complement(2055767..2056687) Escherichia coli JJ1886 17430855 YP_008722061.1 CDS P423_10170 NC_022648.1 2056684 2057025 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phage baseplate protein complement(2056684..2057025) Escherichia coli JJ1886 17430856 YP_008722062.1 CDS P423_10175 NC_022648.1 2057028 2057930 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; baseplate assembly protein complement(2057028..2057930) Escherichia coli JJ1886 17430857 YP_008722063.1 CDS P423_10180 NC_022648.1 2057911 2058447 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2057911..2058447) Escherichia coli JJ1886 17430858 YP_008722064.1 CDS P423_10185 NC_022648.1 2058444 2059124 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2058444..2059124) Escherichia coli JJ1886 17430859 YP_008722065.1 CDS P423_10190 NC_022648.1 2059156 2059497 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2059156..2059497) Escherichia coli JJ1886 17430860 YP_008722066.1 CDS P423_10195 NC_022648.1 2059533 2059952 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-packaging protein complement(2059533..2059952) Escherichia coli JJ1886 17430861 YP_008722067.1 CDS P423_10200 NC_022648.1 2059987 2061021 R Derived by automated computational analysis using gene prediction method: Protein Homology.; head protein complement(2059987..2061021) Escherichia coli JJ1886 17430862 YP_008722068.1 CDS P423_10205 NC_022648.1 2061080 2061409 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Head decoration protein complement(2061080..2061409) Escherichia coli JJ1886 17430863 YP_008722069.1 CDS P423_10210 NC_022648.1 2061409 2062716 R Derived by automated computational analysis using gene prediction method: Protein Homology.; capsid assembly protein complement(2061409..2062716) Escherichia coli JJ1886 17430864 YP_008722070.1 CDS P423_10215 NC_022648.1 2062716 2064290 R Derived by automated computational analysis using gene prediction method: Protein Homology.; plasmid partitioning protein ParB complement(2062716..2064290) Escherichia coli JJ1886 17430865 YP_008722071.1 CDS P423_10220 NC_022648.1 2064287 2064520 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2064287..2064520) Escherichia coli JJ1886 17430866 YP_008722072.1 CDS P423_10225 NC_022648.1 2064520 2066400 R Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase complement(2064520..2066400) Escherichia coli JJ1886 17430867 YP_008722073.1 CDS P423_10230 NC_022648.1 2066369 2066935 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2066369..2066935) Escherichia coli JJ1886 17430868 YP_008722074.1 CDS P423_10235 NC_022648.1 2067289 2067549 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2067289..2067549 Escherichia coli JJ1886 17430869 YP_008722075.1 CDS P423_10240 NC_022648.1 2067609 2067803 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2067609..2067803) Escherichia coli JJ1886 17430870 YP_008722076.1 CDS P423_10245 NC_022648.1 2067811 2068290 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2067811..2068290) Escherichia coli JJ1886 17430871 YP_008722077.1 CDS P423_10250 NC_022648.1 2068290 2068562 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2068290..2068562) Escherichia coli JJ1886 17430872 YP_008722078.1 CDS P423_10255 NC_022648.1 2068562 2068945 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2068562..2068945) Escherichia coli JJ1886 17430873 YP_008722079.1 CDS P423_10260 NC_022648.1 2069058 2069729 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; antitermination protein complement(2069058..2069729) Escherichia coli JJ1886 17430874 YP_008722080.1 CDS P423_10265 NC_022648.1 2069729 2070022 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2069729..2070022) Escherichia coli JJ1886 17430875 YP_008722081.1 CDS P423_10270 NC_022648.1 2070019 2070615 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2070019..2070615) Escherichia coli JJ1886 17430876 YP_008722082.1 CDS P423_10275 NC_022648.1 2070693 2070872 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2070693..2070872) Escherichia coli JJ1886 17430877 YP_008722083.1 CDS P423_10280 NC_022648.1 2071024 2071665 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2071024..2071665) Escherichia coli JJ1886 17430878 YP_008722084.1 CDS P423_10285 NC_022648.1 2071909 2072142 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2071909..2072142 Escherichia coli JJ1886 17430879 YP_008722085.1 CDS P423_10290 NC_022648.1 2072541 2073029 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2072541..2073029 Escherichia coli JJ1886 17430880 YP_008722086.1 CDS P423_10295 NC_022648.1 2073039 2073644 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2073039..2073644 Escherichia coli JJ1886 17430881 YP_008722087.1 CDS P423_10300 NC_022648.1 2074107 2074805 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2074107..2074805) Escherichia coli JJ1886 17430882 YP_008722088.1 CDS P423_10305 NC_022648.1 2075993 2076916 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2075993..2076916 Escherichia coli JJ1886 17430883 YP_008722089.1 CDS P423_10310 NC_022648.1 2077091 2077909 R Derived by automated computational analysis using gene prediction method: Protein Homology.; antirepressor complement(2077091..2077909) Escherichia coli JJ1886 17430884 YP_008722090.1 CDS P423_10315 NC_022648.1 2078152 2078373 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2078152..2078373) Escherichia coli JJ1886 17430885 YP_008722091.1 CDS P423_10320 NC_022648.1 2078561 2078785 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2078561..2078785) Escherichia coli JJ1886 17430886 YP_008722092.1 CDS P423_10325 NC_022648.1 2078782 2079093 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein complement(2078782..2079093) Escherichia coli JJ1886 17430887 YP_008722093.1 CDS P423_10330 NC_022648.1 2079090 2079326 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2079090..2079326) Escherichia coli JJ1886 17430888 YP_008722094.1 CDS P423_10335 NC_022648.1 2079328 2079738 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2079328..2079738) Escherichia coli JJ1886 17430889 YP_008722095.1 CDS P423_10340 NC_022648.1 2079777 2081192 R Derived by automated computational analysis using gene prediction method: Protein Homology.; replication protein P complement(2079777..2081192) Escherichia coli JJ1886 17430890 YP_008722096.1 CDS P423_10345 NC_022648.1 2081182 2081937 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; replication protein complement(2081182..2081937) Escherichia coli JJ1886 17430891 YP_008722097.1 CDS P423_10350 NC_022648.1 2081934 2082158 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; adenylate cyclase complement(2081934..2082158) Escherichia coli JJ1886 17430892 YP_008722098.1 CDS P423_10355 NC_022648.1 2082198 2082674 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2082198..2082674) Escherichia coli JJ1886 17430893 YP_008722099.1 CDS P423_10360 NC_022648.1 2082733 2082963 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2082733..2082963) Escherichia coli JJ1886 17430894 YP_008722100.1 CDS P423_10365 NC_022648.1 2083083 2083475 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2083083..2083475 Escherichia coli JJ1886 17430895 YP_008722101.1 CDS P423_10370 NC_022648.1 2084486 2084806 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2084486..2084806 Escherichia coli JJ1886 17430896 YP_008722102.1 CDS P423_10375 NC_022648.1 2084837 2087053 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2084837..2087053 Escherichia coli JJ1886 17430897 YP_008722103.1 CDS P423_10380 NC_022648.1 2087050 2087619 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2087050..2087619 Escherichia coli JJ1886 17430898 YP_008722104.1 CDS P423_10385 NC_022648.1 2087619 2087801 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2087619..2087801 Escherichia coli JJ1886 17430899 YP_008722105.1 CDS P423_10390 NC_022648.1 2088011 2088274 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2088011..2088274 Escherichia coli JJ1886 17430900 YP_008722106.1 CDS P423_10395 NC_022648.1 2088279 2089259 D Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 2088279..2089259 Escherichia coli JJ1886 17430901 YP_008722107.1 CDS P423_10415 NC_022648.1 2089843 2090391 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphate synthetase complement(2089843..2090391) Escherichia coli JJ1886 17430905 YP_008722108.1 CDS uvrC NC_022648.1 2090448 2092280 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit C complement(2090448..2092280) Escherichia coli JJ1886 17430906 YP_008722109.1 CDS sirA NC_022648.1 2092277 2092933 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator complement(2092277..2092933) Escherichia coli JJ1886 17430907 YP_008722110.1 CDS P423_10430 NC_022648.1 2093392 2093616 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2093392..2093616 Escherichia coli JJ1886 17430908 YP_008722111.1 CDS P423_10435 NC_022648.1 2093684 2094406 R regulates genes involved in cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2093684..2094406) Escherichia coli JJ1886 17430909 YP_008722112.1 CDS P423_10440 NC_022648.1 2094636 2095388 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter ATP-binding protein complement(2094636..2095388) Escherichia coli JJ1886 17430910 YP_008722113.1 CDS P423_10445 NC_022648.1 2095385 2096053 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease complement(2095385..2096053) Escherichia coli JJ1886 17430911 YP_008722114.1 CDS P423_10450 NC_022648.1 2096068 2097054 R catalyzes the formation of pyruvate from D-cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-cysteine desulfhydrase complement(2096068..2097054) Escherichia coli JJ1886 17430912 YP_008722115.1 CDS P423_10455 NC_022648.1 2097159 2097959 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cystine transporter subunit complement(2097159..2097959) Escherichia coli JJ1886 17430913 YP_008722116.1 CDS P423_10460 NC_022648.1 2098047 2098598 R expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliZ complement(2098047..2098598) Escherichia coli JJ1886 17430914 YP_008722117.1 CDS fliA NC_022648.1 2098644 2099363 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis sigma factor complement(2098644..2099363) Escherichia coli JJ1886 17430915 YP_008722118.1 CDS P423_10470 NC_022648.1 2099527 2100576 R Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellin complement(2099527..2100576) Escherichia coli JJ1886 17430916 YP_008722119.1 CDS fliD NC_022648.1 2100824 2102239 D involved in flagellin assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar capping protein 2100824..2102239 Escherichia coli JJ1886 17430917 YP_008722120.1 CDS fliS NC_022648.1 2102255 2102665 D flagellin specific chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliS 2102255..2102665 Escherichia coli JJ1886 17430918 YP_008722121.1 CDS P423_10485 NC_022648.1 2102665 2103030 D binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliT 2102665..2103030 Escherichia coli JJ1886 17430919 YP_008722122.1 CDS P423_10490 NC_022648.1 2103108 2104595 D converts 1,4-alpha-D-glucans to maltodextrin; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-amylase 2103108..2104595 Escherichia coli JJ1886 17430920 YP_008722123.1 CDS P423_10495 NC_022648.1 2104629 2105042 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(2104629..2105042) Escherichia coli JJ1886 17430921 YP_008722124.1 CDS P423_10500 NC_022648.1 2105229 2106434 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2105229..2106434 Escherichia coli JJ1886 17430922 YP_008722125.1 CDS P423_10505 NC_022648.1 2106431 2106664 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2106431..2106664 Escherichia coli JJ1886 17430923 YP_008722126.1 CDS P423_10510 NC_022648.1 2106773 2107270 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2106773..2107270 Escherichia coli JJ1886 17430924 YP_008722127.1 CDS P423_10515 NC_022648.1 2107480 2108028 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase 2107480..2108028 Escherichia coli JJ1886 17430925 YP_008722128.1 CDS P423_10520 NC_022648.1 2108610 2108858 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2108610..2108858 Escherichia coli JJ1886 17430926 YP_008722129.1 CDS P423_10525 NC_022648.1 2108992 2109543 R YbhB; similar to rat and human kinase inhibitory proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase inhibitor protein complement(2108992..2109543) Escherichia coli JJ1886 17430927 YP_008722130.1 CDS emrE NC_022648.1 2109712 2110044 R member of the small MDR (multidrug resistance) family of transporters; in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin; proton-dependent secondary transporter which exchanges protons for compound translocation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; multidrug transporter complement(2109712..2110044) Escherichia coli JJ1886 17430928 YP_008722131.1 CDS P423_10535 NC_022648.1 2110172 2110300 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2110172..2110300 Escherichia coli JJ1886 17430929 YP_008722132.1 CDS fliE NC_022648.1 2110388 2110702 R forms a junction between the M-ring and FlgB during flagella biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-basal body protein FliE complement(2110388..2110702) Escherichia coli JJ1886 17430930 YP_008722133.1 CDS fliF NC_022648.1 2110917 2112575 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar MS-ring protein 2110917..2112575 Escherichia coli JJ1886 17430931 YP_008722134.1 CDS fliG NC_022648.1 2112568 2113563 D One of three proteins involved in switching the direction of the flagellar rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliG 2112568..2113563 Escherichia coli JJ1886 17430932 YP_008722135.1 CDS fliH NC_022648.1 2113556 2114242 D binds to and inhibits the function of flagella specific ATPase FliI; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar assembly protein H 2113556..2114242 Escherichia coli JJ1886 17430933 YP_008722136.1 CDS fliI NC_022648.1 2114242 2115615 D involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP synthase 2114242..2115615 Escherichia coli JJ1886 17430934 YP_008722137.1 CDS fliJ NC_022648.1 2115634 2116077 D rod/hook and filament chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis chaperone 2115634..2116077 Escherichia coli JJ1886 17430935 YP_008722138.1 CDS P423_10570 NC_022648.1 2116074 2117201 D Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-length control protein FliK 2116074..2117201 Escherichia coli JJ1886 17430936 YP_008722139.1 CDS fliL NC_022648.1 2117306 2117770 D interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body protein FliL 2117306..2117770 Escherichia coli JJ1886 17430937 YP_008722140.1 CDS fliM NC_022648.1 2117775 2118779 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliM 2117775..2118779 Escherichia coli JJ1886 17430938 YP_008722141.1 CDS fliN NC_022648.1 2118776 2119189 D One of three proteins involved in switching the direction of the flagellar rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliN 2118776..2119189 Escherichia coli JJ1886 17430939 YP_008722142.1 CDS P423_10590 NC_022648.1 2119192 2119557 D with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliO 2119192..2119557 Escherichia coli JJ1886 17430940 YP_008722143.1 CDS fliP NC_022648.1 2119557 2120294 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliP 2119557..2120294 Escherichia coli JJ1886 17430941 YP_008722144.1 CDS fliQ NC_022648.1 2120304 2120573 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliQ 2120304..2120573 Escherichia coli JJ1886 17430942 YP_008722145.1 CDS fliR NC_022648.1 2120582 2121367 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliR 2120582..2121367 Escherichia coli JJ1886 17430943 YP_008722146.1 CDS rcsA NC_022648.1 2121657 2122280 D with RcsB is a positive regulator of capsular polysaccharide synthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid capsular biosynthesis activation protein A 2121657..2122280 Escherichia coli JJ1886 17430944 YP_008722147.1 CDS P423_10615 NC_022648.1 2122324 2122512 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2122324..2122512) Escherichia coli JJ1886 17430945 YP_008722148.1 CDS P423_10620 NC_022648.1 2122675 2122902 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2122675..2122902 Escherichia coli JJ1886 17430946 YP_008722149.1 CDS P423_10625 NC_022648.1 2123198 2124013 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannosyl-3-phosphoglycerate phosphatase 2123198..2124013 Escherichia coli JJ1886 17430947 YP_008722150.1 CDS P423_10630 NC_022648.1 2124010 2125704 R catalyzes the formation of cyclic di-3',5'-guanylate from guanosine triphosphate; involved in the regulation of cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase complement(2124010..2125704) Escherichia coli JJ1886 17430948 YP_008722151.1 CDS P423_10635 NC_022648.1 2125875 2126057 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2125875..2126057) Escherichia coli JJ1886 17430949 YP_008722152.1 CDS P423_10640 NC_022648.1 2126136 2127053 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2126136..2127053) Escherichia coli JJ1886 17430950 YP_008722153.1 CDS P423_10645 NC_022648.1 2127226 2128146 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2127226..2128146 Escherichia coli JJ1886 17430951 YP_008722154.1 CDS P423_10650 NC_022648.1 2128135 2128605 R DNA mismatch endonuclease; recognizes and repairs T:G mismatches; Derived by automated computational analysis using gene prediction method: Protein Homology.; very short patch repair endonuclease complement(2128135..2128605) Escherichia coli JJ1886 17430952 YP_008722155.1 CDS P423_10655 NC_022648.1 2128586 2130004 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-cytosine methyltransferase complement(2128586..2130004) Escherichia coli JJ1886 17430953 YP_008722156.1 CDS P423_10660 NC_022648.1 2130071 2130766 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2130071..2130766) Escherichia coli JJ1886 17430954 YP_008722157.1 CDS P423_10665 NC_022648.1 2131264 2131467 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2131264..2131467 Escherichia coli JJ1886 17430955 YP_008722158.1 CDS P423_10670 NC_022648.1 2131737 2132852 D allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C 2131737..2132852 Escherichia coli JJ1886 17430956 YP_008722159.1 CDS P423_10675 NC_022648.1 2133445 2134296 D Hsp31 stabilizes early unfolding protein intermediates under severe heat stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein HSP31 2133445..2134296 Escherichia coli JJ1886 17430957 YP_008722160.1 CDS P423_10680 NC_022648.1 2134404 2135762 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase complement(2134404..2135762) Escherichia coli JJ1886 17430958 YP_008722161.1 CDS P423_10685 NC_022648.1 2135762 2136481 R induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2135762..2136481) Escherichia coli JJ1886 17430959 YP_008722162.1 CDS P423_10690 NC_022648.1 2136566 2136979 D catalyzes the formation of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline from 5-hydroxyisourate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyisourate hydrolase 2136566..2136979 Escherichia coli JJ1886 17430960 YP_008722163.1 CDS P423_10695 NC_022648.1 2137088 2138092 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; requires inner membrane anchor protein YedZ; Derived by automated computational analysis using gene prediction method: Protein Homology.; TMAO/DMSO reductase 2137088..2138092 Escherichia coli JJ1886 17430961 YP_008722164.1 CDS P423_10700 NC_022648.1 2138093 2138728 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite oxidase subunit YedZ 2138093..2138728 Escherichia coli JJ1886 17430962 YP_008722165.1 CDS P423_10705 NC_022648.1 2138812 2139534 R Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase complement(2138812..2139534) Escherichia coli JJ1886 17430963 YP_008722166.1 CDS P423_10710 NC_022648.1 2139639 2139812 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(2139639..2139812) Escherichia coli JJ1886 17430964 YP_008722167.1 CDS P423_10715 NC_022648.1 2139917 2140105 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2139917..2140105) Escherichia coli JJ1886 17430965 YP_008722168.1 CDS P423_10720 NC_022648.1 2140421 2141071 D Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc/cadmium-binding protein 2140421..2141071 Escherichia coli JJ1886 17430966 YP_008722169.1 CDS P423_10725 NC_022648.1 2142155 2142442 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2142155..2142442) Escherichia coli JJ1886 17430967 YP_008722170.1 CDS P423_10730 NC_022648.1 2142453 2143157 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2142453..2143157) Escherichia coli JJ1886 17430968 YP_008722171.1 CDS P423_10735 NC_022648.1 2143167 2143448 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2143167..2143448) Escherichia coli JJ1886 17430969 YP_008722172.1 CDS P423_10740 NC_022648.1 2143448 2145826 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2143448..2145826) Escherichia coli JJ1886 17430970 YP_008722173.1 CDS P423_10745 NC_022648.1 2145947 2146405 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS200 complement(2145947..2146405) Escherichia coli JJ1886 17430971 YP_008722174.1 CDS P423_10750 NC_022648.1 2146602 2147201 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2146602..2147201) Escherichia coli JJ1886 17430972 YP_008722175.1 CDS P423_10755 NC_022648.1 2147269 2150664 R Derived by automated computational analysis using gene prediction method: Protein Homology.; host specificity protein J complement(2147269..2150664) Escherichia coli JJ1886 17430973 YP_008722176.1 CDS P423_10760 NC_022648.1 2150725 2151273 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail assembly protein complement(2150725..2151273) Escherichia coli JJ1886 17430974 YP_008722177.1 CDS P423_10765 NC_022648.1 2151270 2152013 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2151270..2152013) Escherichia coli JJ1886 17430975 YP_008722178.1 CDS P423_10770 NC_022648.1 2152019 2152717 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2152019..2152717) Escherichia coli JJ1886 17430976 YP_008722179.1 CDS P423_10775 NC_022648.1 2152717 2153058 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2152717..2153058) Escherichia coli JJ1886 17430977 YP_008722180.1 CDS P423_10780 NC_022648.1 2153051 2156278 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail length tape measure protein complement(2153051..2156278) Escherichia coli JJ1886 17430978 YP_008722181.1 CDS P423_10785 NC_022648.1 2156325 2156603 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail protein complement(2156325..2156603) Escherichia coli JJ1886 17430979 YP_008722182.1 CDS P423_10790 NC_022648.1 2156627 2156998 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phage tail protein complement(2156627..2156998) Escherichia coli JJ1886 17430980 YP_008722183.1 CDS P423_10795 NC_022648.1 2157013 2157717 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2157013..2157717) Escherichia coli JJ1886 17430981 YP_008722184.1 CDS P423_10800 NC_022648.1 2157778 2158122 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2157778..2158122) Escherichia coli JJ1886 17430982 YP_008722185.1 CDS P423_10805 NC_022648.1 2158119 2158568 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2158119..2158568) Escherichia coli JJ1886 17430983 YP_008722186.1 CDS P423_10810 NC_022648.1 2158565 2158903 R Derived by automated computational analysis using gene prediction method: Protein Homology.; head-tail adaptor protein complement(2158565..2158903) Escherichia coli JJ1886 17430984 YP_008722187.1 CDS P423_10815 NC_022648.1 2158912 2159229 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2158912..2159229) Escherichia coli JJ1886 17430985 YP_008722188.1 CDS P423_10820 NC_022648.1 2159306 2160523 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phage capsid protein complement(2159306..2160523) Escherichia coli JJ1886 17430986 YP_008722189.1 CDS P423_10825 NC_022648.1 2160538 2161137 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase complement(2160538..2161137) Escherichia coli JJ1886 17430987 YP_008722190.1 CDS P423_10830 NC_022648.1 2161130 2162356 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2161130..2162356) Escherichia coli JJ1886 17430988 YP_008722191.1 CDS P423_10835 NC_022648.1 2162346 2162507 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2162346..2162507) Escherichia coli JJ1886 17430989 YP_008722192.1 CDS P423_10840 NC_022648.1 2162504 2164261 R Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase complement(2162504..2164261) Escherichia coli JJ1886 17430990 YP_008722193.1 CDS P423_10845 NC_022648.1 2164261 2164581 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; terminase complement(2164261..2164581) Escherichia coli JJ1886 17430991 YP_008722194.1 CDS P423_10850 NC_022648.1 2164891 2165241 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNAse complement(2164891..2165241) Escherichia coli JJ1886 17430992 YP_008722195.1 CDS P423_10855 NC_022648.1 2165767 2166060 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2165767..2166060 Escherichia coli JJ1886 17430993 YP_008722196.1 CDS P423_10860 NC_022648.1 2166092 2166553 R Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase complement(2166092..2166553) Escherichia coli JJ1886 17430994 YP_008722197.1 CDS P423_10865 NC_022648.1 2166550 2167083 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme complement(2166550..2167083) Escherichia coli JJ1886 17430995 YP_008722198.1 CDS P423_10870 NC_022648.1 2167147 2167497 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2167147..2167497) Escherichia coli JJ1886 17430996 YP_008722199.1 CDS P423_10875 NC_022648.1 2167502 2167717 R Derived by automated computational analysis using gene prediction method: Protein Homology.; holin complement(2167502..2167717) Escherichia coli JJ1886 17430997 YP_008722200.1 CDS P423_10880 NC_022648.1 2168025 2168213 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2168025..2168213) Escherichia coli JJ1886 17430998 YP_008722201.1 CDS P423_10885 NC_022648.1 2168473 2168808 D interacts RssB preventing the degradation of the stress sigma factor RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-adapter protein IraM 2168473..2168808 Escherichia coli JJ1886 17430999 YP_008722202.1 CDS P423_10890 NC_022648.1 2169089 2169220 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2169089..2169220) Escherichia coli JJ1886 17431000 YP_008722203.1 CDS P423_10895 NC_022648.1 2169256 2169534 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2169256..2169534) Escherichia coli JJ1886 17431001 YP_008722204.1 CDS P423_10910 NC_022648.1 2170116 2170937 R Derived by automated computational analysis using gene prediction method: Protein Homology.; antitermination protein complement(2170116..2170937) Escherichia coli JJ1886 17431004 YP_008722205.1 CDS P423_10915 NC_022648.1 2170952 2171314 R Derived by automated computational analysis using gene prediction method: Protein Homology.; endodeoxyribonuclease complement(2170952..2171314) Escherichia coli JJ1886 17431005 YP_008722206.1 CDS P423_10920 NC_022648.1 2171315 2172346 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2171315..2172346) Escherichia coli JJ1886 17431006 YP_008722207.1 CDS P423_10925 NC_022648.1 2172594 2172773 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2172594..2172773 Escherichia coli JJ1886 17431007 YP_008722208.1 CDS P423_10930 NC_022648.1 2173229 2173408 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(2173229..2173408) Escherichia coli JJ1886 17431008 YP_008722209.1 CDS P423_10935 NC_022648.1 2173892 2174068 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2173892..2174068) Escherichia coli JJ1886 17431009 YP_008722210.1 CDS P423_10940 NC_022648.1 2174061 2174243 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2174061..2174243) Escherichia coli JJ1886 17431010 YP_008722211.1 CDS P423_10945 NC_022648.1 2174337 2174750 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2174337..2174750) Escherichia coli JJ1886 17431011 YP_008722212.1 CDS P423_10950 NC_022648.1 2174751 2175173 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2174751..2175173) Escherichia coli JJ1886 17431012 YP_008722213.1 CDS P423_10955 NC_022648.1 2175214 2176101 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein complement(2175214..2176101) Escherichia coli JJ1886 17431013 YP_008722214.1 CDS P423_10960 NC_022648.1 2176199 2176624 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Rha family transcriptional regulator complement(2176199..2176624) Escherichia coli JJ1886 17431014 YP_008722215.1 CDS P423_10965 NC_022648.1 2176608 2176889 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2176608..2176889) Escherichia coli JJ1886 17431015 YP_008722216.1 CDS P423_10970 NC_022648.1 2176990 2177409 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; repressor 2176990..2177409 Escherichia coli JJ1886 17431016 YP_008722217.1 CDS P423_10975 NC_022648.1 2177594 2177830 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2177594..2177830 Escherichia coli JJ1886 17431017 YP_008722218.1 CDS P423_10980 NC_022648.1 2177832 2177960 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2177832..2177960 Escherichia coli JJ1886 17431018 YP_008722219.1 CDS P423_10985 NC_022648.1 2177990 2178208 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2177990..2178208 Escherichia coli JJ1886 17431019 YP_008722220.1 CDS P423_10990 NC_022648.1 2178776 2178964 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division inhibition protein DicB 2178776..2178964 Escherichia coli JJ1886 17431020 YP_008722221.1 CDS P423_10995 NC_022648.1 2178961 2179152 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2178961..2179152 Escherichia coli JJ1886 17431021 YP_008722222.1 CDS P423_11000 NC_022648.1 2179245 2181716 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2179245..2181716 Escherichia coli JJ1886 17431022 YP_008722223.1 CDS P423_11005 NC_022648.1 2181775 2181978 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2181775..2181978 Escherichia coli JJ1886 17431023 YP_008722224.1 CDS P423_11010 NC_022648.1 2182158 2183003 D Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 2182158..2183003 Escherichia coli JJ1886 17431024 YP_008722225.1 CDS P423_11020 NC_022648.1 2183200 2184036 D Mlc anti-repressor; regulates ptsG by binding and inactivating Mlc; Derived by automated computational analysis using gene prediction method: Protein Homology.; DgsA anti-repressor MtfA 2183200..2184036 Escherichia coli JJ1886 17431026 YP_008722226.1 CDS P423_11030 NC_022648.1 2184374 2185636 D Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 2184374..2185636 Escherichia coli JJ1886 17431028 YP_008722227.1 CDS P423_11035 NC_022648.1 2185830 2187134 R catalyzes the conversion of chorismate to salicylate in the biosynthesis of the siderophore yersiniabactin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; salicylate synthase complement(2185830..2187134) Escherichia coli JJ1886 17431029 YP_008722228.1 CDS P423_11040 NC_022648.1 2187162 2188442 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MFS transporter complement(2187162..2188442) Escherichia coli JJ1886 17431030 YP_008722229.1 CDS P423_11045 NC_022648.1 2188435 2190237 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter permease complement(2188435..2190237) Escherichia coli JJ1886 17431031 YP_008722230.1 CDS thiQ NC_022648.1 2190224 2191936 R with TbpA and ThiP is part of the thiamine and TPP transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine ABC transporter ATP-binding protein complement(2190224..2191936) Escherichia coli JJ1886 17431032 YP_008722231.1 CDS P423_11055 NC_022648.1 2192193 2193152 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; AraC family transcriptional regulator 2192193..2193152 Escherichia coli JJ1886 17431033 YP_008722232.1 CDS P423_11060 NC_022648.1 2193343 2199450 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptide synthetase 2193343..2199450 Escherichia coli JJ1886 17431034 YP_008722233.1 CDS P423_11065 NC_022648.1 2199538 2209029 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; polyketide synthase 2199538..2209029 Escherichia coli JJ1886 17431035 YP_008722234.1 CDS P423_11070 NC_022648.1 2209026 2210126 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; oxidoreductase 2209026..2210126 Escherichia coli JJ1886 17431036 YP_008722235.1 CDS P423_11075 NC_022648.1 2210123 2210926 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; thioesterase 2210123..2210926 Escherichia coli JJ1886 17431037 YP_008722236.1 CDS entE NC_022648.1 2210930 2212507 D bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin synthase subunit E 2210930..2212507 Escherichia coli JJ1886 17431038 YP_008722237.1 CDS P423_11085 NC_022648.1 2212638 2214659 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ligand-gated channel protein 2212638..2214659 Escherichia coli JJ1886 17431039 YP_008722238.1 CDS P423_11090 NC_022648.1 2215309 2216058 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2215309..2216058 Escherichia coli JJ1886 17431040 YP_008722239.1 CDS P423_11095 NC_022648.1 2216191 2217453 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2216191..2217453 Escherichia coli JJ1886 17431041 YP_008722240.1 CDS P423_11100 NC_022648.1 2217700 2218149 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; invasin 2217700..2218149 Escherichia coli JJ1886 17431042 YP_008722241.1 CDS P423_11105 NC_022648.1 2218277 2219329 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2218277..2219329) Escherichia coli JJ1886 17431043 YP_008722242.1 CDS P423_11110 NC_022648.1 2219644 2220960 D Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate transporter 2219644..2220960 Escherichia coli JJ1886 17431044 YP_008722243.1 CDS P423_11115 NC_022648.1 2221062 2222516 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP nucleosidase 2221062..2222516 Escherichia coli JJ1886 17431045 YP_008722244.1 CDS P423_11120 NC_022648.1 2222859 2223575 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2222859..2223575 Escherichia coli JJ1886 17431046 YP_008722245.1 CDS P423_11130 NC_022648.1 2224205 2225692 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MATE family multidrug exporter complement(2224205..2225692) Escherichia coli JJ1886 17431048 YP_008722246.1 CDS cbl NC_022648.1 2225966 2226916 R LysR-type transcriptional regulator similar to CysB; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates two operons consisting of ABC transporters that are part of the cys regulon; regulated by CysB; DNA-binding transcriptional activator for the ssuEADCB and tauABCD operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; CysB family transcriptional regulator complement(2225966..2226916) Escherichia coli JJ1886 17431050 YP_008722247.1 CDS P423_11145 NC_022648.1 2227018 2227935 R Transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(2227018..2227935) Escherichia coli JJ1886 17431051 YP_008722248.1 CDS P423_11155 NC_022648.1 2228393 2229325 R catalyzes th removal of D-alanine and attachment of the murein lipoprotein to the peptidoglycan tetrapeptide chain; Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-transpeptidase complement(2228393..2229325) Escherichia coli JJ1886 17431053 YP_008722249.1 CDS cobT NC_022648.1 2229390 2230469 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2229390..2230469) Escherichia coli JJ1886 17431054 YP_008722250.1 CDS cobS NC_022648.1 2230481 2231224 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalamin synthase complement(2230481..2231224) Escherichia coli JJ1886 17431055 YP_008722251.1 CDS cobU NC_022648.1 2231221 2231766 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylcobinamide kinase complement(2231221..2231766) Escherichia coli JJ1886 17431056 YP_008722252.1 CDS P423_11175 NC_022648.1 2232231 2232395 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2232231..2232395) Escherichia coli JJ1886 17431057 YP_008722253.1 CDS P423_11180 NC_022648.1 2233438 2235585 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ligand-gated channel 2233438..2235585 Escherichia coli JJ1886 17431058 YP_008722254.1 CDS P423_11185 NC_022648.1 2235585 2235701 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2235585..2235701 Escherichia coli JJ1886 17431059 YP_008722255.1 CDS P423_11190 NC_022648.1 2235956 2236600 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2235956..2236600) Escherichia coli JJ1886 17431060 YP_008722256.1 CDS P423_11195 NC_022648.1 2236585 2237871 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2236585..2237871) Escherichia coli JJ1886 17431061 YP_008722257.1 CDS P423_11200 NC_022648.1 2239060 2239509 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2239060..2239509 Escherichia coli JJ1886 17431062 YP_008722258.1 CDS P423_11205 NC_022648.1 2239523 2240719 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2239523..2240719 Escherichia coli JJ1886 17431063 YP_008722259.1 CDS P423_11210 NC_022648.1 2240754 2241278 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2240754..2241278 Escherichia coli JJ1886 17431064 YP_008722260.1 CDS P423_11215 NC_022648.1 2241280 2242053 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2241280..2242053 Escherichia coli JJ1886 17431065 YP_008722261.1 CDS P423_11220 NC_022648.1 2242674 2242835 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2242674..2242835) Escherichia coli JJ1886 17431066 YP_008722262.1 CDS P423_11225 NC_022648.1 2243055 2244269 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2243055..2244269 Escherichia coli JJ1886 17431067 YP_008722263.1 CDS P423_11230 NC_022648.1 2244283 2245041 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2244283..2245041 Escherichia coli JJ1886 17431068 YP_008722264.1 CDS P423_11235 NC_022648.1 2245095 2246060 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2245095..2246060 Escherichia coli JJ1886 17431069 YP_008722265.1 CDS P423_11240 NC_022648.1 2246063 2247097 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphotriesterase 2246063..2247097 Escherichia coli JJ1886 17431070 YP_008722266.1 CDS P423_11245 NC_022648.1 2247137 2247250 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; gamma-glutamyltranspeptidase complement(2247137..2247250) Escherichia coli JJ1886 17431071 YP_008722267.1 CDS P423_11250 NC_022648.1 2247749 2248117 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(2247749..2248117) Escherichia coli JJ1886 17431072 YP_008722268.1 CDS P423_11255 NC_022648.1 2249412 2249822 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2249412..2249822) Escherichia coli JJ1886 17431073 YP_008722269.1 CDS P423_11260 NC_022648.1 2249810 2250211 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2249810..2250211) Escherichia coli JJ1886 17431074 YP_008722270.1 CDS P423_11265 NC_022648.1 2250377 2250946 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2250377..2250946) Escherichia coli JJ1886 17431075 YP_008722271.1 CDS P423_11270 NC_022648.1 2251586 2251726 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2251586..2251726) Escherichia coli JJ1886 17431076 YP_008722272.1 CDS P423_11275 NC_022648.1 2252061 2252294 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2252061..2252294) Escherichia coli JJ1886 17431077 YP_008722273.1 CDS P423_11280 NC_022648.1 2252526 2253722 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS110 2252526..2253722 Escherichia coli JJ1886 17431078 YP_008722274.1 CDS P423_11285 NC_022648.1 2253918 2254124 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Rha family transcriptional regulator 2253918..2254124 Escherichia coli JJ1886 17431079 YP_008722275.1 CDS P423_11290 NC_022648.1 2254218 2254820 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2254218..2254820 Escherichia coli JJ1886 17431080 YP_008722276.1 CDS P423_11295 NC_022648.1 2255846 2256538 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2255846..2256538) Escherichia coli JJ1886 17431081 YP_008722277.1 CDS P423_11300 NC_022648.1 2256538 2257560 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS100 complement(2256538..2257560) Escherichia coli JJ1886 17431082 YP_008722278.1 CDS P423_11305 NC_022648.1 2259058 2260230 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2259058..2260230 Escherichia coli JJ1886 17431083 YP_008722279.1 CDS P423_11310 NC_022648.1 2260761 2261018 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2260761..2261018) Escherichia coli JJ1886 17431084 YP_008722280.1 CDS P423_11315 NC_022648.1 2261072 2261839 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron ABC transporter complement(2261072..2261839) Escherichia coli JJ1886 17431085 YP_008722281.1 CDS P423_11320 NC_022648.1 2261836 2262894 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron-siderophore ABC transporter permease complement(2261836..2262894) Escherichia coli JJ1886 17431086 YP_008722282.1 CDS P423_11325 NC_022648.1 2262913 2263902 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter substrate-binding protein complement(2262913..2263902) Escherichia coli JJ1886 17431087 YP_008722283.1 CDS P423_11330 NC_022648.1 2263913 2265985 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fatty-acid--CoA ligase complement(2263913..2265985) Escherichia coli JJ1886 17431088 YP_008722284.1 CDS P423_11335 NC_022648.1 2266507 2266941 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2266507..2266941 Escherichia coli JJ1886 17431089 YP_008722285.1 CDS P423_11340 NC_022648.1 2267159 2269543 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2267159..2269543 Escherichia coli JJ1886 17431090 YP_008722286.1 CDS P423_11345 NC_022648.1 2269540 2270445 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2269540..2270445 Escherichia coli JJ1886 17431091 YP_008722287.1 CDS P423_11350 NC_022648.1 2270442 2271512 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2270442..2271512 Escherichia coli JJ1886 17431092 YP_008722288.1 CDS P423_11355 NC_022648.1 2271648 2272061 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2271648..2272061 Escherichia coli JJ1886 17431093 YP_008722289.1 CDS P423_11360 NC_022648.1 2272401 2273717 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2272401..2273717 Escherichia coli JJ1886 17431094 YP_008722290.1 CDS P423_11365 NC_022648.1 2273732 2274478 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATP-binding protein 2273732..2274478 Escherichia coli JJ1886 17431095 YP_008722291.1 CDS P423_11370 NC_022648.1 2274573 2274911 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2274573..2274911 Escherichia coli JJ1886 17431096 YP_008722292.1 CDS P423_11375 NC_022648.1 2274927 2275337 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2274927..2275337 Escherichia coli JJ1886 17431097 YP_008722293.1 CDS P423_11380 NC_022648.1 2275558 2276376 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2275558..2276376 Escherichia coli JJ1886 17431098 YP_008722294.1 CDS P423_11385 NC_022648.1 2276718 2277191 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2276718..2277191 Escherichia coli JJ1886 17431099 YP_008722295.1 CDS P423_11390 NC_022648.1 2277207 2277683 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2277207..2277683 Escherichia coli JJ1886 17431100 YP_008722296.1 CDS P423_11395 NC_022648.1 2277746 2277967 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2277746..2277967 Escherichia coli JJ1886 17431101 YP_008722297.1 CDS P423_11400 NC_022648.1 2277986 2278630 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; antitoxin of the YeeV-YeeU toxin-antitoxin system 2277986..2278630 Escherichia coli JJ1886 17431102 YP_008722298.1 CDS P423_11405 NC_022648.1 2278646 2279014 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 2278646..2279014 Escherichia coli JJ1886 17431103 YP_008722299.1 CDS P423_11410 NC_022648.1 2279103 2279477 D Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin 2279103..2279477 Escherichia coli JJ1886 17431104 YP_008722300.1 CDS P423_11415 NC_022648.1 2279474 2279668 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2279474..2279668 Escherichia coli JJ1886 17431105 YP_008722301.1 CDS P423_11420 NC_022648.1 2280566 2280895 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2280566..2280895) Escherichia coli JJ1886 17431106 YP_008722302.1 CDS P423_11425 NC_022648.1 2281067 2282125 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2281067..2282125) Escherichia coli JJ1886 17431107 YP_008722303.1 CDS P423_11430 NC_022648.1 2282323 2282796 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase inhibitor complement(2282323..2282796) Escherichia coli JJ1886 17431108 YP_008722304.1 CDS P423_11435 NC_022648.1 2282915 2284081 R removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase complement(2282915..2284081) Escherichia coli JJ1886 17431109 YP_008722305.1 CDS sbcB NC_022648.1 2284290 2285717 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease I 2284290..2285717 Escherichia coli JJ1886 17431110 YP_008722306.1 CDS P423_11445 NC_022648.1 2285828 2286286 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS200 complement(2285828..2286286) Escherichia coli JJ1886 17431111 YP_008722307.1 CDS P423_11450 NC_022648.1 2286503 2287861 R Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter complement(2286503..2287861) Escherichia coli JJ1886 17431112 YP_008722308.1 CDS P423_11455 NC_022648.1 2288128 2289057 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(2288128..2289057) Escherichia coli JJ1886 17431113 YP_008722309.1 CDS P423_11460 NC_022648.1 2289103 2289927 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2289103..2289927) Escherichia coli JJ1886 17431114 YP_008722310.1 CDS P423_11465 NC_022648.1 2290010 2290264 R Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin YoeB complement(2290010..2290264) Escherichia coli JJ1886 17431115 YP_008722311.1 CDS P423_11470 NC_022648.1 2290261 2290512 R Antitoxin that counteracts the effect of the YoeB toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin complement(2290261..2290512) Escherichia coli JJ1886 17431116 YP_008722312.1 CDS hisG NC_022648.1 2290991 2291890 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP phosphoribosyltransferase 2290991..2291890 Escherichia coli JJ1886 17431117 YP_008722313.1 CDS hisD NC_022648.1 2291896 2293200 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 2291896..2293200 Escherichia coli JJ1886 17431118 YP_008722314.1 CDS P423_11485 NC_022648.1 2293197 2294267 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidinol-phosphate aminotransferase 2293197..2294267 Escherichia coli JJ1886 17431119 YP_008722315.1 CDS P423_11490 NC_022648.1 2294267 2295334 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazoleglycerol-phosphate dehydratase 2294267..2295334 Escherichia coli JJ1886 17431120 YP_008722316.1 CDS hisH NC_022648.1 2295334 2295924 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazole glycerol phosphate synthase 2295334..2295924 Escherichia coli JJ1886 17431121 YP_008722317.1 CDS P423_11500 NC_022648.1 2295924 2296661 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2295924..2296661 Escherichia coli JJ1886 17431122 YP_008722318.1 CDS P423_11505 NC_022648.1 2296643 2297419 D Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazole glycerol phosphate synthase 2296643..2297419 Escherichia coli JJ1886 17431123 YP_008722319.1 CDS P423_11510 NC_022648.1 2297413 2298024 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosyl-AMP cyclohydrolase 2297413..2298024 Escherichia coli JJ1886 17431124 YP_008722320.1 CDS P423_11515 NC_022648.1 2298210 2299187 R regulator of length of O-antigen component of lipopolysaccharide chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; chain-length determining protein complement(2298210..2299187) Escherichia coli JJ1886 17431125 YP_008722321.1 CDS P423_11520 NC_022648.1 2299333 2300499 R catalyzes the formation of UDP-glucuronate from UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-glucose 6-dehydrogenase complement(2299333..2300499) Escherichia coli JJ1886 17431126 YP_008722322.1 CDS P423_11525 NC_022648.1 2300746 2302152 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconate dehydrogenase complement(2300746..2302152) Escherichia coli JJ1886 17431127 YP_008722323.1 CDS P423_11530 NC_022648.1 2302249 2303040 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2302249..2303040) Escherichia coli JJ1886 17431128 YP_008722324.1 CDS P423_11535 NC_022648.1 2303042 2304142 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2303042..2304142) Escherichia coli JJ1886 17431129 YP_008722325.1 CDS P423_11540 NC_022648.1 2304127 2304528 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2304127..2304528) Escherichia coli JJ1886 17431130 YP_008722326.1 CDS P423_11545 NC_022648.1 2304803 2306020 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; intermembrane protein complement(2304803..2306020) Escherichia coli JJ1886 17431131 YP_008722327.1 CDS P423_11550 NC_022648.1 2305992 2307071 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyltransferase complement(2305992..2307071) Escherichia coli JJ1886 17431132 YP_008722328.1 CDS P423_11555 NC_022648.1 2307203 2308168 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; rhamnosyl transferase complement(2307203..2308168) Escherichia coli JJ1886 17431133 YP_008722329.1 CDS P423_11560 NC_022648.1 2308173 2309444 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flippase complement(2308173..2309444) Escherichia coli JJ1886 17431134 YP_008722330.1 CDS P423_11565 NC_022648.1 2309434 2309976 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2309434..2309976) Escherichia coli JJ1886 17431135 YP_008722331.1 CDS P423_11570 NC_022648.1 2309981 2310859 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphate thymidylyltransferase complement(2309981..2310859) Escherichia coli JJ1886 17431136 YP_008722332.1 CDS P423_11575 NC_022648.1 2310917 2311816 R with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.; dTDP-4-dehydrorhamnose reductase complement(2310917..2311816) Escherichia coli JJ1886 17431137 YP_008722333.1 CDS P423_11580 NC_022648.1 2311816 2312901 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dTDP-glucose 4,6-dehydratase complement(2311816..2312901) Escherichia coli JJ1886 17431138 YP_008722334.1 CDS P423_11585 NC_022648.1 2313274 2314167 R together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(2313274..2314167) Escherichia coli JJ1886 17431139 YP_008722335.1 CDS wcaM NC_022648.1 2314342 2315736 R WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein complement(2314342..2315736) Escherichia coli JJ1886 17431140 YP_008722336.1 CDS P423_11595 NC_022648.1 2315747 2316967 R Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis glycosyltransferase WcaL complement(2315747..2316967) Escherichia coli JJ1886 17431141 YP_008722337.1 CDS P423_11600 NC_022648.1 2316964 2318244 R Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein complement(2316964..2318244) Escherichia coli JJ1886 17431142 YP_008722338.1 CDS P423_11605 NC_022648.1 2318713 2320191 R Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid exporter complement(2318713..2320191) Escherichia coli JJ1886 17431143 YP_008722339.1 CDS P423_11610 NC_022648.1 2320193 2321587 R WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-glucose lipid carrier transferase complement(2320193..2321587) Escherichia coli JJ1886 17431144 YP_008722340.1 CDS P423_11615 NC_022648.1 2321643 2323013 R capsular polysaccharide biosynthesis protein; catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomannomutase complement(2321643..2323013) Escherichia coli JJ1886 17431145 YP_008722341.1 CDS cpsB NC_022648.1 2323118 2324554 R capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-1-phosphate guanyltransferase complement(2323118..2324554) Escherichia coli JJ1886 17431146 YP_008722342.1 CDS P423_11630 NC_022648.1 2324557 2325780 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2324557..2325780) Escherichia coli JJ1886 17431147 YP_008722343.1 CDS P423_11635 NC_022648.1 2325777 2326259 R catalyzes the formation of GDP and D-mannose from GDP-D-mannose; also hydrolyzes GDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-mannose mannosyl hydrolase NudD complement(2325777..2326259) Escherichia coli JJ1886 17431148 YP_008722344.1 CDS P423_11640 NC_022648.1 2326259 2327224 R bifunctional GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase;catalyzes the formation of GDP-fucose from GDP-4-dehydro-6-deoxy-D-mannose; Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-fucose synthetase complement(2326259..2327224) Escherichia coli JJ1886 17431149 YP_008722345.1 CDS P423_11645 NC_022648.1 2327227 2328348 R catalyzes the formation of GDP-4-dehydro-6-deoxy-D-mannose from GDP mannose; Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-mannose 4,6-dehydratase complement(2327227..2328348) Escherichia coli JJ1886 17431150 YP_008722346.1 CDS P423_11650 NC_022648.1 2328375 2328923 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl transferase complement(2328375..2328923) Escherichia coli JJ1886 17431151 YP_008722347.1 CDS P423_11655 NC_022648.1 2328939 2329685 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2328939..2329685) Escherichia coli JJ1886 17431152 YP_008722348.1 CDS wcaD NC_022648.1 2329766 2330986 R essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein complement(2329766..2330986) Escherichia coli JJ1886 17431153 YP_008722349.1 CDS P423_11665 NC_022648.1 2330961 2332178 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2330961..2332178) Escherichia coli JJ1886 17431154 YP_008722350.1 CDS P423_11670 NC_022648.1 2332175 2332663 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl transferase complement(2332175..2332663) Escherichia coli JJ1886 17431155 YP_008722351.1 CDS P423_11675 NC_022648.1 2332666 2333505 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2332666..2333505) Escherichia coli JJ1886 17431156 YP_008722352.1 CDS P423_11680 NC_022648.1 2333634 2335796 R Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine kinase complement(2333634..2335796) Escherichia coli JJ1886 17431157 YP_008722353.1 CDS P423_11685 NC_022648.1 2335799 2336242 R Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-tyrosine phosphatase complement(2335799..2336242) Escherichia coli JJ1886 17431158 YP_008722354.1 CDS P423_11690 NC_022648.1 2336248 2337387 R required for the translocation of capsular polysaccharide through the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; polysaccharide export protein Wza complement(2336248..2337387) Escherichia coli JJ1886 17431159 YP_008722355.1 CDS P423_11695 NC_022648.1 2338047 2339630 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2338047..2339630 Escherichia coli JJ1886 17431160 YP_008722356.1 CDS P423_11700 NC_022648.1 2340082 2341935 R YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; Derived by automated computational analysis using gene prediction method: Protein Homology.; assembly protein complement(2340082..2341935) Escherichia coli JJ1886 17431161 YP_008722357.1 CDS P423_11705 NC_022648.1 2341957 2342538 R Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxycytidine triphosphate deaminase complement(2341957..2342538) Escherichia coli JJ1886 17431162 YP_008722358.1 CDS P423_11710 NC_022648.1 2342630 2343271 R Derived by automated computational analysis using gene prediction method: Protein Homology.; uridine/cytidine kinase complement(2342630..2343271) Escherichia coli JJ1886 17431163 YP_008722359.1 CDS P423_11715 NC_022648.1 2343589 2346906 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 2343589..2346906 Escherichia coli JJ1886 17431164 YP_008722360.1 CDS P423_11720 NC_022648.1 2347013 2347861 R inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-methyl-adenine DNA glycosylase complement(2347013..2347861) Escherichia coli JJ1886 17431165 YP_008722361.1 CDS P423_11725 NC_022648.1 2347995 2349347 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone 2347995..2349347 Escherichia coli JJ1886 17431166 YP_008722362.1 CDS P423_11730 NC_022648.1 2349360 2351300 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2349360..2351300) Escherichia coli JJ1886 17431167 YP_008722363.1 CDS P423_11735 NC_022648.1 2351297 2352058 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2351297..2352058) Escherichia coli JJ1886 17431168 YP_008722364.1 CDS P423_11740 NC_022648.1 2352055 2352714 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2352055..2352714) Escherichia coli JJ1886 17431169 YP_008722365.1 CDS P423_11745 NC_022648.1 2353279 2353425 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2353279..2353425 Escherichia coli JJ1886 17431170 YP_008722366.1 CDS P423_11750 NC_022648.1 2353595 2354842 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2353595..2354842 Escherichia coli JJ1886 17431171 YP_008722367.1 CDS P423_11755 NC_022648.1 2354842 2357964 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2354842..2357964 Escherichia coli JJ1886 17431172 YP_008722368.1 CDS P423_11760 NC_022648.1 2357965 2361042 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2357965..2361042 Escherichia coli JJ1886 17431173 YP_008722369.1 CDS P423_11765 NC_022648.1 2361043 2362458 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 2361043..2362458 Escherichia coli JJ1886 17431174 YP_008722370.1 CDS P423_11770 NC_022648.1 2362455 2363858 D Derived by automated computational analysis using gene prediction method: Protein Homology.; signal transduction histidine-protein kinase BaeS 2362455..2363858 Escherichia coli JJ1886 17431175 YP_008722371.1 CDS P423_11775 NC_022648.1 2363855 2364577 D response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2363855..2364577 Escherichia coli JJ1886 17431176 YP_008722372.1 CDS P423_11780 NC_022648.1 2364757 2365089 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2364757..2365089 Escherichia coli JJ1886 17431177 YP_008722373.1 CDS P423_11785 NC_022648.1 2365236 2366597 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 2365236..2366597 Escherichia coli JJ1886 17431178 YP_008722374.1 CDS P423_11790 NC_022648.1 2367097 2367414 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2367097..2367414) Escherichia coli JJ1886 17431179 YP_008722375.1 CDS P423_11795 NC_022648.1 2367829 2368728 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid kinase 2367829..2368728 Escherichia coli JJ1886 17431180 YP_008722376.1 CDS srlR NC_022648.1 2368810 2369583 R regulates genes involved in glucitol utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2368810..2369583) Escherichia coli JJ1886 17431181 YP_008722377.1 CDS P423_11805 NC_022648.1 2369689 2370729 R Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactitol-1-phosphate 5-dehydrogenase complement(2369689..2370729) Escherichia coli JJ1886 17431182 YP_008722378.1 CDS P423_11810 NC_022648.1 2372135 2372419 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS galactitol transporter subunit IIB complement(2372135..2372419) Escherichia coli JJ1886 17431183 YP_008722379.1 CDS P423_11815 NC_022648.1 2372450 2372902 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS galactitol transporter subunit IIA complement(2372450..2372902) Escherichia coli JJ1886 17431184 YP_008722380.1 CDS P423_11820 NC_022648.1 2372912 2374174 R with KbaY catalyzes the formation of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate from tagatose-1,6-bisphosphate; subunit Z may act as a chaperone for the Y subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; tagatose-bisphosphate aldolase complement(2372912..2374174) Escherichia coli JJ1886 17431185 YP_008722381.1 CDS gatY NC_022648.1 2374203 2375057 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(2374203..2375057) Escherichia coli JJ1886 17431186 YP_008722382.1 CDS P423_11830 NC_022648.1 2375284 2376336 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(2375284..2376336) Escherichia coli JJ1886 17431187 YP_008722383.1 CDS P423_11835 NC_022648.1 2376593 2377870 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside transporter 2376593..2377870 Escherichia coli JJ1886 17431188 YP_008722384.1 CDS P423_11840 NC_022648.1 2377867 2378871 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2377867..2378871 Escherichia coli JJ1886 17431189 YP_008722385.1 CDS P423_11845 NC_022648.1 2378868 2379833 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase 2378868..2379833 Escherichia coli JJ1886 17431190 YP_008722386.1 CDS P423_11850 NC_022648.1 2379807 2380553 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(2379807..2380553) Escherichia coli JJ1886 17431191 YP_008722387.1 CDS P423_11855 NC_022648.1 2380605 2381423 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2380605..2381423) Escherichia coli JJ1886 17431192 YP_008722388.1 CDS P423_11860 NC_022648.1 2381488 2382288 R catalyzes the formation hydroxymethylpyrimidine phosphate from hydroxymethylpyrimidine and the formation of of 4-amino-2-methyl-5-diphosphomethylpyrimidine from hydroxymethylpyrimidine phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase complement(2381488..2382288) Escherichia coli JJ1886 17431193 YP_008722389.1 CDS P423_11865 NC_022648.1 2382285 2383073 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyethylthiazole kinase complement(2382285..2383073) Escherichia coli JJ1886 17431194 YP_008722390.1 CDS P423_11870 NC_022648.1 2383296 2383568 R DNA-binding; binds the RcnA promotor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2383296..2383568) Escherichia coli JJ1886 17431195 YP_008722391.1 CDS P423_11875 NC_022648.1 2383689 2384513 D membrane protein conferring nickel and cobalt resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter 2383689..2384513 Escherichia coli JJ1886 17431196 YP_008722392.1 CDS P423_11880 NC_022648.1 2384732 2385070 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel/cobalt homeostasis protein RcnB 2384732..2385070 Escherichia coli JJ1886 17431197 YP_008722393.1 CDS P423_11885 NC_022648.1 2385152 2386186 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2385152..2386186) Escherichia coli JJ1886 17431198 YP_008722394.1 CDS P423_11890 NC_022648.1 2386202 2388682 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein complement(2386202..2388682) Escherichia coli JJ1886 17431199 YP_008722395.1 CDS P423_11895 NC_022648.1 2388698 2389372 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone protein StcB complement(2388698..2389372) Escherichia coli JJ1886 17431200 YP_008722396.1 CDS P423_11900 NC_022648.1 2389453 2389995 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2389453..2389995) Escherichia coli JJ1886 17431201 YP_008722397.1 CDS P423_11905 NC_022648.1 2390288 2390569 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2390288..2390569) Escherichia coli JJ1886 17431202 YP_008722398.1 CDS P423_11910 NC_022648.1 2390832 2391941 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ATPase complement(2390832..2391941) Escherichia coli JJ1886 17431203 YP_008722399.1 CDS metG NC_022648.1 2392073 2394106 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionyl-tRNA synthetase 2392073..2394106 Escherichia coli JJ1886 17431204 YP_008722400.1 CDS P423_11920 NC_022648.1 2394247 2398047 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; molybdate metabolism regulator 2394247..2398047 Escherichia coli JJ1886 17431205 YP_008722401.1 CDS P423_11925 NC_022648.1 2398060 2401821 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MolR family transcriptional regulator 2398060..2401821 Escherichia coli JJ1886 17431206 YP_008722402.1 CDS P423_11930 NC_022648.1 2401831 2405463 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2401831..2405463 Escherichia coli JJ1886 17431207 YP_008722403.1 CDS P423_11935 NC_022648.1 2406022 2406111 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2406022..2406111) Escherichia coli JJ1886 17431208 YP_008722404.1 CDS P423_11940 NC_022648.1 2406542 2407630 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2406542..2407630 Escherichia coli JJ1886 17431209 YP_008722405.1 CDS P423_11945 NC_022648.1 2407641 2409920 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2407641..2409920 Escherichia coli JJ1886 17431210 YP_008722406.1 CDS P423_11950 NC_022648.1 2409913 2411049 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2409913..2411049 Escherichia coli JJ1886 17431211 YP_008722407.1 CDS P423_11955 NC_022648.1 2411046 2413049 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2411046..2413049 Escherichia coli JJ1886 17431212 YP_008722408.1 CDS P423_11960 NC_022648.1 2413174 2413635 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2413174..2413635 Escherichia coli JJ1886 17431213 YP_008722409.1 CDS P423_11965 NC_022648.1 2413676 2414146 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2413676..2414146) Escherichia coli JJ1886 17431214 YP_008722410.1 CDS P423_11970 NC_022648.1 2414193 2414912 R unknown function; when overproduced it confers drug-resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2414193..2414912) Escherichia coli JJ1886 17431215 YP_008722411.1 CDS P423_11975 NC_022648.1 2414909 2416594 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase complement(2414909..2416594) Escherichia coli JJ1886 17431216 YP_008722412.1 CDS P423_11980 NC_022648.1 2416816 2417547 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MerR family transcriptional regulator 2416816..2417547 Escherichia coli JJ1886 17431217 YP_008722413.1 CDS P423_11985 NC_022648.1 2417607 2417714 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2417607..2417714 Escherichia coli JJ1886 17431218 YP_008722414.1 CDS P423_11990 NC_022648.1 2417695 2418426 R Derived by automated computational analysis using gene prediction method: Protein Homology.; osmoprotectant uptake system permease complement(2417695..2418426) Escherichia coli JJ1886 17431219 YP_008722415.1 CDS P423_11995 NC_022648.1 2418431 2419357 R with ProWX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter ATP-binding protein complement(2418431..2419357) Escherichia coli JJ1886 17431220 YP_008722416.1 CDS P423_12000 NC_022648.1 2419350 2420507 R Derived by automated computational analysis using gene prediction method: Protein Homology.; osmoprotectant uptake system permease complement(2419350..2420507) Escherichia coli JJ1886 17431221 YP_008722417.1 CDS P423_12005 NC_022648.1 2420514 2421431 R Derived by automated computational analysis using gene prediction method: Protein Homology.; osmoprotectant uptake system substrate-binding protein complement(2420514..2421431) Escherichia coli JJ1886 17431222 YP_008722418.1 CDS P423_12010 NC_022648.1 2421621 2423918 R catalyzes the hydrolysis of terminal beta-D-glucosyl residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-glucoside glucohydrolase complement(2421621..2423918) Escherichia coli JJ1886 17431223 YP_008722419.1 CDS P423_12015 NC_022648.1 2424114 2425829 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-lactate dehydrogenase 2424114..2425829 Escherichia coli JJ1886 17431224 YP_008722420.1 CDS pbpG NC_022648.1 2425868 2426800 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine endopeptidase complement(2425868..2426800) Escherichia coli JJ1886 17431225 YP_008722421.1 CDS P423_12025 NC_022648.1 2426974 2427561 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2426974..2427561) Escherichia coli JJ1886 17431226 YP_008722422.1 CDS P423_12030 NC_022648.1 2427731 2428309 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2427731..2428309 Escherichia coli JJ1886 17431227 YP_008722423.1 CDS P423_12035 NC_022648.1 2428439 2429200 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(2428439..2429200) Escherichia coli JJ1886 17431228 YP_008722424.1 CDS P423_12040 NC_022648.1 2429253 2430689 R may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance outer membrane protein MdtQ complement(2429253..2430689) Escherichia coli JJ1886 17431229 YP_008722425.1 CDS P423_12045 NC_022648.1 2430913 2430996 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2430913..2430996 Escherichia coli JJ1886 17431230 YP_008722426.1 CDS P423_12050 NC_022648.1 2431384 2432400 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase C complement(2431384..2432400) Escherichia coli JJ1886 17431231 YP_008722427.1 CDS P423_12055 NC_022648.1 2432573 2432971 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2432573..2432971 Escherichia coli JJ1886 17431232 YP_008722428.1 CDS P423_12060 NC_022648.1 2432968 2433663 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2432968..2433663 Escherichia coli JJ1886 17431233 YP_008722429.1 CDS P423_12065 NC_022648.1 2433793 2434677 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytidine deaminase 2433793..2434677 Escherichia coli JJ1886 17431234 YP_008722430.1 CDS P423_12070 NC_022648.1 2434827 2435546 D involved in vancomycin sensitivity and other barrier functions of the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; vancomycin high temperature exclusion protein 2434827..2435546 Escherichia coli JJ1886 17431235 YP_008722431.1 CDS P423_12075 NC_022648.1 2435549 2435788 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2435549..2435788 Escherichia coli JJ1886 17431236 YP_008722432.1 CDS P423_12080 NC_022648.1 2435982 2437220 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropyrimidine dehydrogenase subunit A 2435982..2437220 Escherichia coli JJ1886 17431237 YP_008722433.1 CDS P423_12085 NC_022648.1 2437214 2438449 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropyrimidine dehydrogenase subunit B 2437214..2438449 Escherichia coli JJ1886 17431238 YP_008722434.1 CDS mglC NC_022648.1 2438692 2439702 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-methylgalactoside transporter complement(2438692..2439702) Escherichia coli JJ1886 17431239 YP_008722435.1 CDS P423_12095 NC_022648.1 2439718 2441238 R with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose transporter ATP binding protein complement(2439718..2441238) Escherichia coli JJ1886 17431240 YP_008722436.1 CDS P423_12100 NC_022648.1 2441299 2442297 R wtih MglAC is involved in the transport of beta-methylgalactoside; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-galactoside ABC transporter substrate-binding protein complement(2441299..2442297) Escherichia coli JJ1886 17431241 YP_008722437.1 CDS P423_12105 NC_022648.1 2442577 2443617 R controls transcription of galETKM; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2442577..2443617) Escherichia coli JJ1886 17431242 YP_008722438.1 CDS P423_12110 NC_022648.1 2443759 2444916 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2443759..2444916) Escherichia coli JJ1886 17431243 YP_008722439.1 CDS P423_12115 NC_022648.1 2444933 2445601 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP cyclohydrolase I complement(2444933..2445601) Escherichia coli JJ1886 17431244 YP_008722440.1 CDS P423_12120 NC_022648.1 2445859 2446695 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-formylglutathione hydrolase 2445859..2446695 Escherichia coli JJ1886 17431245 YP_008722441.1 CDS P423_12125 NC_022648.1 2446727 2448718 R Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; catecholate siderophore receptor CirA complement(2446727..2448718) Escherichia coli JJ1886 17431246 YP_008722442.1 CDS P423_12130 NC_022648.1 2449010 2450479 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine transporter complement(2449010..2450479) Escherichia coli JJ1886 17431247 YP_008722443.1 CDS P423_12135 NC_022648.1 2450684 2451565 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2450684..2451565) Escherichia coli JJ1886 17431248 YP_008722444.1 CDS P423_12140 NC_022648.1 2451664 2452713 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2451664..2452713 Escherichia coli JJ1886 17431249 YP_008722445.1 CDS P423_12145 NC_022648.1 2452787 2453644 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease V 2452787..2453644 Escherichia coli JJ1886 17431250 YP_008722446.1 CDS P423_12150 NC_022648.1 2453648 2454736 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate kinase 2453648..2454736 Escherichia coli JJ1886 17431251 YP_008722447.1 CDS rihB NC_022648.1 2455004 2455945 R Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside hydrolase complement(2455004..2455945) Escherichia coli JJ1886 17431252 YP_008722448.1 CDS P423_12160 NC_022648.1 2456114 2456773 D activator of nucleoside metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator 2456114..2456773 Escherichia coli JJ1886 17431253 YP_008722449.1 CDS P423_12165 NC_022648.1 2456840 2458090 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease complement(2456840..2458090) Escherichia coli JJ1886 17431254 YP_008722450.1 CDS P423_12170 NC_022648.1 2458184 2459122 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pseudouridine-5'-phosphate glycosidase complement(2458184..2459122) Escherichia coli JJ1886 17431255 YP_008722451.1 CDS P423_12175 NC_022648.1 2459110 2460051 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pseudouridine kinase complement(2459110..2460051) Escherichia coli JJ1886 17431256 YP_008722452.1 CDS P423_12185 NC_022648.1 2460507 2462198 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIBC complement(2460507..2462198) Escherichia coli JJ1886 17431258 YP_008722453.1 CDS fruK NC_022648.1 2462215 2463153 R converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-phosphofructokinase complement(2462215..2463153) Escherichia coli JJ1886 17431259 YP_008722454.1 CDS P423_12195 NC_022648.1 2463153 2464283 R phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HPr which then transfers the phosphoryl group to the IIB component; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIA complement(2463153..2464283) Escherichia coli JJ1886 17431260 YP_008722455.1 CDS P423_12200 NC_022648.1 2464651 2465832 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar transporter 2464651..2465832 Escherichia coli JJ1886 17431261 YP_008722456.1 CDS P423_12205 NC_022648.1 2465829 2466083 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2465829..2466083) Escherichia coli JJ1886 17431262 YP_008722457.1 CDS P423_12210 NC_022648.1 2466238 2466810 D Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor Ts 2466238..2466810 Escherichia coli JJ1886 17431263 YP_008722458.1 CDS P423_12215 NC_022648.1 2467033 2468499 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase 2467033..2468499 Escherichia coli JJ1886 17431264 YP_008722459.1 CDS P423_12220 NC_022648.1 2468617 2469603 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2468617..2469603 Escherichia coli JJ1886 17431265 YP_008722460.1 CDS P423_12225 NC_022648.1 2469642 2470355 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2469642..2470355 Escherichia coli JJ1886 17431266 YP_008722461.1 CDS P423_12230 NC_022648.1 2470767 2471333 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 2470767..2471333 Escherichia coli JJ1886 17431267 YP_008722462.1 CDS P423_12235 NC_022648.1 2471514 2473070 D involved in resistance to the phages N4 and lambda; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage resistance protein 2471514..2473070 Escherichia coli JJ1886 17431268 YP_008722463.1 CDS P423_12240 NC_022648.1 2473152 2474966 D with YejBEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 2473152..2474966 Escherichia coli JJ1886 17431269 YP_008722464.1 CDS P423_12245 NC_022648.1 2474967 2476061 D with YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter permease YejB 2474967..2476061 Escherichia coli JJ1886 17431270 YP_008722465.1 CDS P423_12250 NC_022648.1 2476061 2477086 D part of the microcin C transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter permease 2476061..2477086 Escherichia coli JJ1886 17431271 YP_008722466.1 CDS P423_12255 NC_022648.1 2477088 2478677 D with YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter ATP-binding protein YejF 2477088..2478677 Escherichia coli JJ1886 17431272 YP_008722467.1 CDS P423_12260 NC_022648.1 2478681 2479025 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2478681..2479025) Escherichia coli JJ1886 17431273 YP_008722468.1 CDS P423_12265 NC_022648.1 2479359 2480549 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(2479359..2480549) Escherichia coli JJ1886 17431274 YP_008722469.1 CDS P423_12270 NC_022648.1 2480577 2481272 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA pseudouridylate synthase complement(2480577..2481272) Escherichia coli JJ1886 17431275 YP_008722470.1 CDS P423_12275 NC_022648.1 2481422 2483182 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2481422..2483182 Escherichia coli JJ1886 17431276 YP_008722471.1 CDS P423_12280 NC_022648.1 2483307 2483591 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L25 2483307..2483591 Escherichia coli JJ1886 17431277 YP_008722472.1 CDS P423_12285 NC_022648.1 2483730 2484737 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoid-associated protein NdpA complement(2483730..2484737) Escherichia coli JJ1886 17431278 YP_008722473.1 CDS P423_12290 NC_022648.1 2484919 2485146 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2484919..2485146 Escherichia coli JJ1886 17431279 YP_008722474.1 CDS P423_12295 NC_022648.1 2485166 2486926 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2485166..2486926 Escherichia coli JJ1886 17431280 YP_008722475.1 CDS P423_12305 NC_022648.1 2487179 2487427 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; autotransporter complement(2487179..2487427) Escherichia coli JJ1886 17431282 YP_008722476.1 CDS P423_12310 NC_022648.1 2487430 2487819 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; autotransporter outer membrane protein complement(2487430..2487819) Escherichia coli JJ1886 17431283 YP_008722477.1 CDS P423_12315 NC_022648.1 2488451 2489098 D nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2488451..2489098 Escherichia coli JJ1886 17431284 YP_008722478.1 CDS P423_12320 NC_022648.1 2489133 2490185 R cytochrome c-type biogenesis protein; involved in the attachment of heme to cytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme lyase subunit CcmH complement(2489133..2490185) Escherichia coli JJ1886 17431285 YP_008722479.1 CDS P423_12325 NC_022648.1 2490182 2490739 R cytochrome c-type biogenesis thioredoxin; involved in the reduction of disulfide bonds to allow heme bonding; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein complement(2490182..2490739) Escherichia coli JJ1886 17431286 YP_008722480.1 CDS P423_12330 NC_022648.1 2490736 2492679 R cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme lyase subunit CcmF complement(2490736..2492679) Escherichia coli JJ1886 17431287 YP_008722481.1 CDS P423_12335 NC_022648.1 2492676 2493155 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C biogenesis protein complement(2492676..2493155) Escherichia coli JJ1886 17431288 YP_008722482.1 CDS P423_12340 NC_022648.1 2493152 2493361 R is invovled in heme transfer during cytochrome c biogenesis; acts to stabilize CcmC and CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C biogenesis protein CcmD complement(2493152..2493361) Escherichia coli JJ1886 17431289 YP_008722483.1 CDS P423_12345 NC_022648.1 2493358 2494095 R with CcmABDE is involved in the transport of protoheme IX; CcmC is required for heme transfer to CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease complement(2493358..2494095) Escherichia coli JJ1886 17431290 YP_008722484.1 CDS P423_12350 NC_022648.1 2494137 2494799 R with CcmABCE is involved in the transport of protoheme IX; CcmB is required for the release of holoCcmE from CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease complement(2494137..2494799) Escherichia coli JJ1886 17431291 YP_008722485.1 CDS P423_12355 NC_022648.1 2494796 2495413 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C biogenesis protein CcmA complement(2494796..2495413) Escherichia coli JJ1886 17431292 YP_008722486.1 CDS P423_12360 NC_022648.1 2495432 2496034 R with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C protein NapC complement(2495432..2496034) Escherichia coli JJ1886 17431293 YP_008722487.1 CDS napB NC_022648.1 2496044 2496493 R small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase cytochrome C550 subunit complement(2496044..2496493) Escherichia coli JJ1886 17431294 YP_008722488.1 CDS napH NC_022648.1 2496490 2497353 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinol dehydrogenase complement(2496490..2497353) Escherichia coli JJ1886 17431295 YP_008722489.1 CDS napG NC_022648.1 2497340 2498035 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinol dehydrogenase complement(2497340..2498035) Escherichia coli JJ1886 17431296 YP_008722490.1 CDS P423_12380 NC_022648.1 2498042 2500528 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase catalytic subunit complement(2498042..2500528) Escherichia coli JJ1886 17431297 YP_008722491.1 CDS P423_12385 NC_022648.1 2500525 2500788 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase complement(2500525..2500788) Escherichia coli JJ1886 17431298 YP_008722492.1 CDS P423_12390 NC_022648.1 2500778 2501272 R Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin complement(2500778..2501272) Escherichia coli JJ1886 17431299 YP_008722493.1 CDS P423_12395 NC_022648.1 2501680 2502168 D serine protease inhibitor, inhibits trypsin and other proteases; Derived by automated computational analysis using gene prediction method: Protein Homology.; ecotin 2501680..2502168 Escherichia coli JJ1886 17431300 YP_008722494.1 CDS P423_12400 NC_022648.1 2502318 2503964 R Derived by automated computational analysis using gene prediction method: Protein Homology.; malate:quinone oxidoreductase complement(2502318..2503964) Escherichia coli JJ1886 17431301 YP_008722495.1 CDS P423_12405 NC_022648.1 2504182 2505825 R efflux pump for the antibacterial peptide microcin J25; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein complement(2504182..2505825) Escherichia coli JJ1886 17431302 YP_008722496.1 CDS P423_12410 NC_022648.1 2505901 2506551 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoglutarate-dependent dioxygenase complement(2505901..2506551) Escherichia coli JJ1886 17431303 YP_008722497.1 CDS P423_12415 NC_022648.1 2506551 2507615 R regulates genes involved in the repair of alkylated DNA; repairs DNA containing 6-O-methylguanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2506551..2507615) Escherichia coli JJ1886 17431304 YP_008722498.1 CDS P423_12420 NC_022648.1 2507689 2508744 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine biosynthesis lipoprotein ApbE complement(2507689..2508744) Escherichia coli JJ1886 17431305 YP_008722499.1 CDS P423_12425 NC_022648.1 2508856 2509977 R allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C complement(2508856..2509977) Escherichia coli JJ1886 17431306 YP_008722500.1 CDS P423_12430 NC_022648.1 2510716 2513388 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2510716..2513388 Escherichia coli JJ1886 17431307 YP_008722501.1 CDS P423_12435 NC_022648.1 2513405 2514055 D two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2513405..2514055 Escherichia coli JJ1886 17431308 YP_008722502.1 CDS P423_12440 NC_022648.1 2514255 2517104 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(2514255..2517104) Escherichia coli JJ1886 17431309 YP_008722503.1 CDS P423_12445 NC_022648.1 2517271 2519097 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein ZraS 2517271..2519097 Escherichia coli JJ1886 17431310 YP_008722504.1 CDS P423_12450 NC_022648.1 2519094 2520479 D DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetoacetate metabolism regulatory protein AtoC 2519094..2520479 Escherichia coli JJ1886 17431311 YP_008722505.1 CDS P423_12455 NC_022648.1 2520675 2521337 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA:acetoacetyl-CoA transferase subunit alpha 2520675..2521337 Escherichia coli JJ1886 17431312 YP_008722506.1 CDS P423_12460 NC_022648.1 2521337 2521987 D Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyl-CoA:3-ketoacid-CoA transferase 2521337..2521987 Escherichia coli JJ1886 17431313 YP_008722507.1 CDS P423_12465 NC_022648.1 2521984 2523306 D Derived by automated computational analysis using gene prediction method: Protein Homology.; short-chain fatty acid transporter 2521984..2523306 Escherichia coli JJ1886 17431314 YP_008722508.1 CDS P423_12470 NC_022648.1 2523337 2524521 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA acetyltransferase 2523337..2524521 Escherichia coli JJ1886 17431315 YP_008722509.1 CDS P423_12475 NC_022648.1 2524595 2525371 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2524595..2525371) Escherichia coli JJ1886 17431316 YP_008722510.1 CDS P423_12480 NC_022648.1 2525376 2527025 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2525376..2527025) Escherichia coli JJ1886 17431317 YP_008722511.1 CDS P423_12485 NC_022648.1 2527026 2531489 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2527026..2531489) Escherichia coli JJ1886 17431318 YP_008722512.1 CDS P423_12490 NC_022648.1 2531564 2532187 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2531564..2532187) Escherichia coli JJ1886 17431319 YP_008722513.1 CDS P423_12495 NC_022648.1 2532184 2533872 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2532184..2533872) Escherichia coli JJ1886 17431320 YP_008722514.1 CDS P423_12500 NC_022648.1 2534021 2536648 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase subunit A complement(2534021..2536648) Escherichia coli JJ1886 17431321 YP_008722515.1 CDS P423_12505 NC_022648.1 2536795 2537517 D Involved in ubiquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase 2536795..2537517 Escherichia coli JJ1886 17431322 YP_008722516.1 CDS P423_12510 NC_022648.1 2537657 2541421 R Derived by automated computational analysis using gene prediction method: Protein Homology.; adhesin complement(2537657..2541421) Escherichia coli JJ1886 17431323 YP_008722517.1 CDS P423_12515 NC_022648.1 2542097 2544382 D Catalyzes the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit alpha 2542097..2544382 Escherichia coli JJ1886 17431324 YP_008722518.1 CDS P423_12520 NC_022648.1 2544471 2545601 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit beta 2544471..2545601 Escherichia coli JJ1886 17431325 YP_008722519.1 CDS P423_12525 NC_022648.1 2545601 2545855 D plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2Fe-2S ferredoxin 2545601..2545855 Escherichia coli JJ1886 17431326 YP_008722520.1 CDS P423_12530 NC_022648.1 2545909 2546559 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2545909..2546559) Escherichia coli JJ1886 17431327 YP_008722521.1 CDS glpQ NC_022648.1 2546762 2547838 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerophosphodiester phosphodiesterase complement(2546762..2547838) Escherichia coli JJ1886 17431328 YP_008722522.1 CDS glpT NC_022648.1 2547843 2549201 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate transporter complement(2547843..2549201) Escherichia coli JJ1886 17431329 YP_008722523.1 CDS glpA NC_022648.1 2549474 2551102 D anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate dehydrogenase subunit A 2549474..2551102 Escherichia coli JJ1886 17431330 YP_008722524.1 CDS P423_12550 NC_022648.1 2551092 2552351 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate dehydrogenase subunit B 2551092..2552351 Escherichia coli JJ1886 17431331 YP_008722525.1 CDS glpC NC_022648.1 2552348 2553538 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate dehydrogenase subunit C 2552348..2553538 Escherichia coli JJ1886 17431332 YP_008722526.1 CDS P423_12560 NC_022648.1 2553563 2553688 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2553563..2553688 Escherichia coli JJ1886 17431333 YP_008722527.1 CDS P423_12565 NC_022648.1 2553731 2554726 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2553731..2554726 Escherichia coli JJ1886 17431334 YP_008722528.1 CDS P423_12570 NC_022648.1 2554739 2554960 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2554739..2554960 Escherichia coli JJ1886 17431335 YP_008722529.1 CDS P423_12575 NC_022648.1 2555001 2555804 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(2555001..2555804) Escherichia coli JJ1886 17431336 YP_008722530.1 CDS P423_12580 NC_022648.1 2555822 2557111 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(2555822..2557111) Escherichia coli JJ1886 17431337 YP_008722531.1 CDS P423_12585 NC_022648.1 2557168 2558385 R catalyzes the formation of 2-keto-3-deoxy-L-rhamnonate from L-rhamnonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-rhamnonate dehydratase complement(2557168..2558385) Escherichia coli JJ1886 17431338 YP_008722532.1 CDS P423_12590 NC_022648.1 2558388 2559170 R Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator complement(2558388..2559170) Escherichia coli JJ1886 17431339 YP_008722533.1 CDS P423_12595 NC_022648.1 2559390 2560592 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2559390..2560592) Escherichia coli JJ1886 17431340 YP_008722534.1 CDS P423_12600 NC_022648.1 2560692 2561234 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2560692..2561234) Escherichia coli JJ1886 17431341 YP_008722535.1 CDS P423_12605 NC_022648.1 2561513 2561938 D catalyzes the hydrolysis of nucleoside triphosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphatase NudI 2561513..2561938 Escherichia coli JJ1886 17431342 YP_008722536.1 CDS P423_12610 NC_022648.1 2561977 2562579 R catalyzes the of heptose(II) of the outer membrane lipopolysaccharide core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptose(II)-phosphate phosphatase complement(2561977..2562579) Escherichia coli JJ1886 17431343 YP_008722537.1 CDS P423_12615 NC_022648.1 2562887 2564026 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase 2562887..2564026 Escherichia coli JJ1886 17431344 YP_008722538.1 CDS P423_12620 NC_022648.1 2564030 2564998 D catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase 2564030..2564998 Escherichia coli JJ1886 17431345 YP_008722539.1 CDS P423_12625 NC_022648.1 2564998 2566980 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2564998..2566980 Escherichia coli JJ1886 17431346 YP_008722540.1 CDS P423_12630 NC_022648.1 2566977 2567867 D catalyzes the formation of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase 2566977..2567867 Escherichia coli JJ1886 17431347 YP_008722541.1 CDS arnT NC_022648.1 2567867 2569519 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxy-L-arabinose transferase 2567867..2569519 Escherichia coli JJ1886 17431348 YP_008722542.1 CDS P423_12640 NC_022648.1 2569516 2569851 D with ArnE is involved in transporting 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the cytoplasmic face to the periplasmic face of the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase subunit E 2569516..2569851 Escherichia coli JJ1886 17431349 YP_008722543.1 CDS P423_12645 NC_022648.1 2569851 2570237 D with ArnE is responsible for the transport of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the cytoplasm to the periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase subunit F 2569851..2570237 Escherichia coli JJ1886 17431350 YP_008722544.1 CDS P423_12650 NC_022648.1 2570231 2570497 R with BasR regulates genes involved in polymyxin resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; signal transduction protein PmrD complement(2570231..2570497) Escherichia coli JJ1886 17431351 YP_008722545.1 CDS P423_12655 NC_022648.1 2570607 2571962 R Derived by automated computational analysis using gene prediction method: Protein Homology.; O-succinylbenzoic acid--CoA ligase complement(2570607..2571962) Escherichia coli JJ1886 17431352 YP_008722546.1 CDS P423_12660 NC_022648.1 2571959 2572921 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; O-succinylbenzoate synthase complement(2571959..2572921) Escherichia coli JJ1886 17431353 YP_008722547.1 CDS P423_12665 NC_022648.1 2572921 2573778 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxynaphthoic acid synthetase complement(2572921..2573778) Escherichia coli JJ1886 17431354 YP_008722548.1 CDS P423_12670 NC_022648.1 2573793 2574551 R catalyzes the formation of (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate in menaquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase complement(2573793..2574551) Escherichia coli JJ1886 17431355 YP_008722549.1 CDS P423_12675 NC_022648.1 2574548 2576218 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(2574548..2576218) Escherichia coli JJ1886 17431356 YP_008722550.1 CDS P423_12680 NC_022648.1 2576307 2577602 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isochorismate synthase complement(2576307..2577602) Escherichia coli JJ1886 17431357 YP_008722551.1 CDS P423_12685 NC_022648.1 2577681 2577986 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2577681..2577986) Escherichia coli JJ1886 17431358 YP_008722552.1 CDS P423_12690 NC_022648.1 2578041 2578502 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase complement(2578041..2578502) Escherichia coli JJ1886 17431359 YP_008722553.1 CDS P423_12695 NC_022648.1 2578567 2579484 D RNase BN; member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease Z 2578567..2579484 Escherichia coli JJ1886 17431360 YP_008722554.1 CDS P423_12700 NC_022648.1 2579605 2581347 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2579605..2581347) Escherichia coli JJ1886 17431361 YP_008722555.1 CDS P423_12705 NC_022648.1 2581485 2582456 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2581485..2582456 Escherichia coli JJ1886 17431362 YP_008722556.1 CDS P423_12710 NC_022648.1 2582559 2583062 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2582559..2583062 Escherichia coli JJ1886 17431363 YP_008722557.1 CDS P423_12715 NC_022648.1 2583129 2584586 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit N complement(2583129..2584586) Escherichia coli JJ1886 17431364 YP_008722558.1 CDS P423_12720 NC_022648.1 2584593 2586122 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit M complement(2584593..2586122) Escherichia coli JJ1886 17431365 YP_008722559.1 CDS P423_12725 NC_022648.1 2586286 2588127 R Catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit L complement(2586286..2588127) Escherichia coli JJ1886 17431366 YP_008722560.1 CDS P423_12730 NC_022648.1 2588124 2588426 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit K complement(2588124..2588426) Escherichia coli JJ1886 17431367 YP_008722561.1 CDS P423_12735 NC_022648.1 2588423 2588977 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit J complement(2588423..2588977) Escherichia coli JJ1886 17431368 YP_008722562.1 CDS P423_12740 NC_022648.1 2588989 2589531 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit I complement(2588989..2589531) Escherichia coli JJ1886 17431369 YP_008722563.1 CDS P423_12745 NC_022648.1 2589546 2590523 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit H complement(2589546..2590523) Escherichia coli JJ1886 17431370 YP_008722564.1 CDS P423_12750 NC_022648.1 2590520 2593246 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit G complement(2590520..2593246) Escherichia coli JJ1886 17431371 YP_008722565.1 CDS P423_12755 NC_022648.1 2593299 2594636 R part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit F complement(2593299..2594636) Escherichia coli JJ1886 17431372 YP_008722566.1 CDS P423_12760 NC_022648.1 2594633 2595133 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit E complement(2594633..2595133) Escherichia coli JJ1886 17431373 YP_008722567.1 CDS P423_12765 NC_022648.1 2595136 2596938 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(2595136..2596938) Escherichia coli JJ1886 17431374 YP_008722568.1 CDS P423_12770 NC_022648.1 2597032 2597694 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit B complement(2597032..2597694) Escherichia coli JJ1886 17431375 YP_008722569.1 CDS P423_12775 NC_022648.1 2597710 2598153 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit A complement(2597710..2598153) Escherichia coli JJ1886 17431376 YP_008722570.1 CDS P423_12780 NC_022648.1 2598783 2599721 R involved in the regulation of genes involved in flagella synthesis, motility and chemotaxis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2598783..2599721) Escherichia coli JJ1886 17431377 YP_008722571.1 CDS P423_12785 NC_022648.1 2600641 2601858 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase AlaT 2600641..2601858 Escherichia coli JJ1886 17431378 YP_008722572.1 CDS P423_12790 NC_022648.1 2601942 2602541 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase 2601942..2602541 Escherichia coli JJ1886 17431379 YP_008722573.1 CDS P423_12795 NC_022648.1 2602600 2604432 R Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate transporter complement(2602600..2604432) Escherichia coli JJ1886 17431380 YP_008722574.1 CDS P423_12800 NC_022648.1 2604519 2605169 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatase complement(2604519..2605169) Escherichia coli JJ1886 17431381 YP_008722575.1 CDS P423_12805 NC_022648.1 2605180 2605674 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2605180..2605674) Escherichia coli JJ1886 17431382 YP_008722576.1 CDS P423_12810 NC_022648.1 2605757 2606212 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2605757..2606212) Escherichia coli JJ1886 17431383 YP_008722577.1 CDS P423_12815 NC_022648.1 2606281 2606412 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2606281..2606412) Escherichia coli JJ1886 17431384 YP_008722578.1 CDS P423_12820 NC_022648.1 2606550 2607752 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; also known to act on propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetate kinase 2606550..2607752 Escherichia coli JJ1886 17431385 YP_008722579.1 CDS P423_12825 NC_022648.1 2607827 2609971 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate acetyltransferase 2607827..2609971 Escherichia coli JJ1886 17431386 YP_008722580.1 CDS P423_12830 NC_022648.1 2610161 2611681 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2610161..2611681 Escherichia coli JJ1886 17431387 YP_008722581.1 CDS P423_12835 NC_022648.1 2611714 2612256 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX hydrolase complement(2611714..2612256) Escherichia coli JJ1886 17431388 YP_008722582.1 CDS P423_12840 NC_022648.1 2612314 2612865 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphodiesterase complement(2612314..2612865) Escherichia coli JJ1886 17431389 YP_008722583.1 CDS P423_12845 NC_022648.1 2612921 2613565 R catalyzes the formation of 2,4-dinitrophenyl-S-glutathione from 1-chloro-2,4-dinitrobenzene and glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase complement(2612921..2613565) Escherichia coli JJ1886 17431390 YP_008722584.1 CDS P423_12850 NC_022648.1 2613701 2614348 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GSH-dependent disulfide bond oxidoreductase 2613701..2614348 Escherichia coli JJ1886 17431391 YP_008722585.1 CDS folX NC_022648.1 2614405 2614767 D catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 2614405..2614767 Escherichia coli JJ1886 17431392 YP_008722586.1 CDS P423_12860 NC_022648.1 2614788 2615681 D Derived by automated computational analysis using gene prediction method: Protein Homology.; epimerase 2614788..2615681 Escherichia coli JJ1886 17431393 YP_008722587.1 CDS glnQ NC_022648.1 2615840 2616613 R similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter ATP-binding protein complement(2615840..2616613) Escherichia coli JJ1886 17431394 YP_008722588.1 CDS P423_12870 NC_022648.1 2616621 2617337 R with HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine/lysine/arginine/ornithine ABC transporter permease HisM complement(2616621..2617337) Escherichia coli JJ1886 17431395 YP_008722589.1 CDS P423_12875 NC_022648.1 2617334 2618020 R with HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine/lysine/arginine/ornithine ABC transporter permease HisQ complement(2617334..2618020) Escherichia coli JJ1886 17431396 YP_008722590.1 CDS P423_12880 NC_022648.1 2618110 2618892 R Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter complement(2618110..2618892) Escherichia coli JJ1886 17431397 YP_008722591.1 CDS P423_12885 NC_022648.1 2619113 2619895 R with HisPMQ is involved in the transport of histidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(2619113..2619895) Escherichia coli JJ1886 17431398 YP_008722592.1 CDS P423_12890 NC_022648.1 2620161 2620730 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2620161..2620730) Escherichia coli JJ1886 17431399 YP_008722593.1 CDS P423_12895 NC_022648.1 2620825 2622342 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; amidophosphoribosyltransferase complement(2620825..2622342) Escherichia coli JJ1886 17431400 YP_008722594.1 CDS P423_12900 NC_022648.1 2622379 2622867 R membrane protein required for colicin V production; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin V production protein complement(2622379..2622867) Escherichia coli JJ1886 17431401 YP_008722595.1 CDS P423_12905 NC_022648.1 2623308 2623970 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein DedD complement(2623308..2623970) Escherichia coli JJ1886 17431402 YP_008722596.1 CDS P423_12910 NC_022648.1 2623960 2625228 R Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(2623960..2625228) Escherichia coli JJ1886 17431403 YP_008722597.1 CDS P423_12915 NC_022648.1 2625298 2626212 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase subunit beta complement(2625298..2626212) Escherichia coli JJ1886 17431404 YP_008722598.1 CDS P423_12920 NC_022648.1 2626368 2627027 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2626368..2627027) Escherichia coli JJ1886 17431405 YP_008722599.1 CDS truA NC_022648.1 2627110 2627922 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase A complement(2627110..2627922) Escherichia coli JJ1886 17431406 YP_008722600.1 CDS P423_12930 NC_022648.1 2627922 2628935 R Derived by automated computational analysis using gene prediction method: Protein Homology.; semialdehyde dehydrogenase complement(2627922..2628935) Escherichia coli JJ1886 17431407 YP_008722601.1 CDS P423_12935 NC_022648.1 2629001 2630137 R catalyzes the formation of 3-hydroxy-2-oxo-4-phosphonooxybutanoate from erythronate-4-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; erythronate-4-phosphate dehydrogenase complement(2629001..2630137) Escherichia coli JJ1886 17431408 YP_008722602.1 CDS flk NC_022648.1 2630236 2631231 D in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagella biosynthesis regulator 2630236..2631231 Escherichia coli JJ1886 17431409 YP_008722603.1 CDS P423_12945 NC_022648.1 2631228 2632406 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(2631228..2632406) Escherichia coli JJ1886 17431410 YP_008722604.1 CDS P423_12950 NC_022648.1 2632671 2633891 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase complement(2632671..2633891) Escherichia coli JJ1886 17431411 YP_008722605.1 CDS mnmC NC_022648.1 2634050 2636056 D 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase 2634050..2636056 Escherichia coli JJ1886 17431412 YP_008722606.1 CDS P423_12960 NC_022648.1 2636177 2636455 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2636177..2636455) Escherichia coli JJ1886 17431413 YP_008722607.1 CDS P423_12965 NC_022648.1 2636489 2637037 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2636489..2637037) Escherichia coli JJ1886 17431414 YP_008722608.1 CDS P423_12970 NC_022648.1 2637037 2637846 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2637037..2637846) Escherichia coli JJ1886 17431415 YP_008722609.1 CDS mepA NC_022648.1 2637846 2638670 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-insensitive murein endopeptidase complement(2637846..2638670) Escherichia coli JJ1886 17431416 YP_008722610.1 CDS P423_12980 NC_022648.1 2638674 2639759 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate synthase complement(2638674..2639759) Escherichia coli JJ1886 17431417 YP_008722611.1 CDS P423_12985 NC_022648.1 2639794 2640726 R involved in methylation of ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2639794..2640726) Escherichia coli JJ1886 17431418 YP_008722612.1 CDS P423_12990 NC_022648.1 2640892 2641443 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase S10 2640892..2641443 Escherichia coli JJ1886 17431419 YP_008722613.1 CDS P423_12995 NC_022648.1 2641503 2642318 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(2641503..2642318) Escherichia coli JJ1886 17431420 YP_008722614.1 CDS P423_13000 NC_022648.1 2642329 2642856 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(2642329..2642856) Escherichia coli JJ1886 17431421 YP_008722615.1 CDS P423_13005 NC_022648.1 2642853 2643332 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SteE complement(2642853..2643332) Escherichia coli JJ1886 17431422 YP_008722616.1 CDS P423_13010 NC_022648.1 2643329 2643820 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2643329..2643820) Escherichia coli JJ1886 17431423 YP_008722617.1 CDS P423_13015 NC_022648.1 2643837 2644589 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein StfD complement(2643837..2644589) Escherichia coli JJ1886 17431424 YP_008722618.1 CDS P423_13020 NC_022648.1 2644609 2647257 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SteB complement(2644609..2647257) Escherichia coli JJ1886 17431425 YP_008722619.1 CDS P423_13025 NC_022648.1 2647338 2647904 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(2647338..2647904) Escherichia coli JJ1886 17431426 YP_008722620.1 CDS P423_13030 NC_022648.1 2648463 2648948 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphohistidine phosphatase complement(2648463..2648948) Escherichia coli JJ1886 17431427 YP_008722621.1 CDS fadJ NC_022648.1 2649151 2651295 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fatty-acid oxidation protein subunit alpha complement(2649151..2651295) Escherichia coli JJ1886 17431428 YP_008722622.1 CDS fadI NC_022648.1 2651295 2652605 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-CoA thiolase complement(2651295..2652605) Escherichia coli JJ1886 17431429 YP_008722623.1 CDS P423_13045 NC_022648.1 2652786 2653070 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2652786..2653070) Escherichia coli JJ1886 17431430 YP_008722624.1 CDS P423_13050 NC_022648.1 2653442 2654782 D Derived by automated computational analysis using gene prediction method: Protein Homology.; long-chain fatty acid outer membrane transporter 2653442..2654782 Escherichia coli JJ1886 17431431 YP_008722625.1 CDS P423_13055 NC_022648.1 2654844 2655599 R involved in maintaining OM lipid asymmetry; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2654844..2655599) Escherichia coli JJ1886 17431432 YP_008722626.1 CDS P423_13060 NC_022648.1 2655893 2656825 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2655893..2656825 Escherichia coli JJ1886 17431433 YP_008722627.1 CDS P423_13070 NC_022648.1 2657205 2658311 D Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 2657205..2658311 Escherichia coli JJ1886 17431435 YP_008722628.1 CDS P423_13075 NC_022648.1 2658291 2659241 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2658291..2659241) Escherichia coli JJ1886 17431436 YP_008722629.1 CDS P423_13080 NC_022648.1 2659263 2660144 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2659263..2660144) Escherichia coli JJ1886 17431437 YP_008722630.1 CDS P423_13085 NC_022648.1 2660698 2662269 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS66 complement(2660698..2662269) Escherichia coli JJ1886 17431438 YP_008722631.1 CDS P423_13090 NC_022648.1 2662342 2662692 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase complement(2662342..2662692) Escherichia coli JJ1886 17431439 YP_008722632.1 CDS P423_13095 NC_022648.1 2662689 2663114 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(2662689..2663114) Escherichia coli JJ1886 17431440 YP_008722633.1 CDS P423_13100 NC_022648.1 2663168 2663356 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2663168..2663356 Escherichia coli JJ1886 17431441 YP_008722634.1 CDS P423_13105 NC_022648.1 2663452 2663688 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS66 2663452..2663688 Escherichia coli JJ1886 17431442 YP_008722635.1 CDS P423_13110 NC_022648.1 2663943 2664215 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2663943..2664215) Escherichia coli JJ1886 17431443 YP_008722636.1 CDS P423_13115 NC_022648.1 2664498 2667185 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alkaline-shock protein complement(2664498..2667185) Escherichia coli JJ1886 17431444 YP_008722637.1 CDS P423_13120 NC_022648.1 2667182 2667592 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2667182..2667592) Escherichia coli JJ1886 17431445 YP_008722638.1 CDS P423_13125 NC_022648.1 2667585 2667821 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2667585..2667821) Escherichia coli JJ1886 17431446 YP_008722639.1 CDS P423_13130 NC_022648.1 2667818 2668408 R Derived by automated computational analysis using gene prediction method: Protein Homology.; CI repressor complement(2667818..2668408) Escherichia coli JJ1886 17431447 YP_008722640.1 CDS P423_13135 NC_022648.1 2668496 2669500 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(2668496..2669500) Escherichia coli JJ1886 17431448 YP_008722641.1 CDS P423_13140 NC_022648.1 2669523 2670383 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2669523..2670383) Escherichia coli JJ1886 17431449 YP_008722642.1 CDS P423_13145 NC_022648.1 2670401 2670628 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AlpA family transcriptional regulator complement(2670401..2670628) Escherichia coli JJ1886 17431450 YP_008722643.1 CDS P423_13150 NC_022648.1 2671203 2672138 R regulates the synthesis and expression of the dsdXA operon and dadA gene; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2671203..2672138) Escherichia coli JJ1886 17431451 YP_008722644.1 CDS P423_13155 NC_022648.1 2672356 2673693 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 2672356..2673693 Escherichia coli JJ1886 17431452 YP_008722645.1 CDS P423_13160 NC_022648.1 2673711 2675039 D catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-serine dehydratase 2673711..2675039 Escherichia coli JJ1886 17431453 YP_008722646.1 CDS emrB NC_022648.1 2675147 2676685 R multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein B complement(2675147..2676685) Escherichia coli JJ1886 17431454 YP_008722647.1 CDS P423_13170 NC_022648.1 2676685 2677848 R with ErmA and TolC forms a multidrug efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(2676685..2677848) Escherichia coli JJ1886 17431455 YP_008722648.1 CDS P423_13175 NC_022648.1 2678264 2678878 D response regulator in two-component regulatory system with EvgS; phosphorylated EvgA activates ompC, emrKY, gadABC, hdeAB and others genes; involved in acid resistance, osmotic adaption, and drug resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator 2678264..2678878 Escherichia coli JJ1886 17431456 YP_008722649.1 CDS P423_13180 NC_022648.1 2678883 2682476 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 2678883..2682476 Escherichia coli JJ1886 17431457 YP_008722650.1 CDS P423_13185 NC_022648.1 2682532 2683677 R Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA-transferase complement(2682532..2683677) Escherichia coli JJ1886 17431458 YP_008722651.1 CDS P423_13190 NC_022648.1 2683751 2684695 R member of the AEC family of auxin efflux transporters; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(2683751..2684695) Escherichia coli JJ1886 17431459 YP_008722652.1 CDS P423_13195 NC_022648.1 2684765 2686459 R catalyzes the formation of formyl-CoA from oxalyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxalyl-CoA decarboxylase complement(2684765..2686459) Escherichia coli JJ1886 17431460 YP_008722653.1 CDS P423_13200 NC_022648.1 2686513 2687763 R catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; formyl-CoA transferase complement(2686513..2687763) Escherichia coli JJ1886 17431461 YP_008722654.1 CDS P423_13205 NC_022648.1 2688275 2688907 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2688275..2688907) Escherichia coli JJ1886 17431462 YP_008722655.1 CDS P423_13210 NC_022648.1 2689202 2689477 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2689202..2689477 Escherichia coli JJ1886 17431463 YP_008722656.1 CDS P423_13215 NC_022648.1 2689554 2689796 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2689554..2689796) Escherichia coli JJ1886 17431464 YP_008722657.1 CDS P423_13220 NC_022648.1 2690149 2691069 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis palmitoleoyl acyltransferase 2690149..2691069 Escherichia coli JJ1886 17431465 YP_008722658.1 CDS P423_13225 NC_022648.1 2691562 2692800 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate aminotransferase complement(2691562..2692800) Escherichia coli JJ1886 17431466 YP_008722659.1 CDS P423_13230 NC_022648.1 2693177 2694874 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2693177..2694874 Escherichia coli JJ1886 17431467 YP_008722660.1 CDS P423_13235 NC_022648.1 2694889 2695623 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LytTR family transcriptional regulator 2694889..2695623 Escherichia coli JJ1886 17431468 YP_008722661.1 CDS P423_13240 NC_022648.1 2695636 2696493 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 2695636..2696493 Escherichia coli JJ1886 17431469 YP_008722662.1 CDS P423_13245 NC_022648.1 2696496 2698991 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIA complement(2696496..2698991) Escherichia coli JJ1886 17431470 YP_008722663.1 CDS P423_13250 NC_022648.1 2699016 2700053 R metalloprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.; exoaminopeptidase complement(2699016..2700053) Escherichia coli JJ1886 17431471 YP_008722664.1 CDS P423_13255 NC_022648.1 2700053 2701138 R Xaa-Pro aminopeptidase; limited methionine aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase complement(2700053..2701138) Escherichia coli JJ1886 17431472 YP_008722665.1 CDS P423_13260 NC_022648.1 2701153 2702400 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIC complement(2701153..2702400) Escherichia coli JJ1886 17431473 YP_008722666.1 CDS P423_13265 NC_022648.1 2702422 2702748 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB complement(2702422..2702748) Escherichia coli JJ1886 17431474 YP_008722667.1 CDS glk NC_022648.1 2702967 2703932 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucokinase complement(2702967..2703932) Escherichia coli JJ1886 17431475 YP_008722668.1 CDS P423_13280 NC_022648.1 2705507 2705833 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2705507..2705833 Escherichia coli JJ1886 17431477 YP_008722669.1 CDS P423_13285 NC_022648.1 2705974 2707212 R Derived by automated computational analysis using gene prediction method: Protein Homology.; manganese transporter complement(2705974..2707212) Escherichia coli JJ1886 17431478 YP_008722670.1 CDS P423_13290 NC_022648.1 2707548 2708750 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease 2707548..2708750 Escherichia coli JJ1886 17431479 YP_008722671.1 CDS P423_13295 NC_022648.1 2708800 2710989 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2708800..2710989) Escherichia coli JJ1886 17431480 YP_008722672.1 CDS P423_13310 NC_022648.1 2711607 2711966 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2711607..2711966 Escherichia coli JJ1886 17431483 YP_008722673.1 CDS P423_13315 NC_022648.1 2711968 2712360 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2711968..2712360 Escherichia coli JJ1886 17431484 YP_008722674.1 CDS gltX NC_022648.1 2712411 2713826 R catalyzes a two-step reaction, first charging an glutamate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminyl-tRNA synthetase complement(2712411..2713826) Escherichia coli JJ1886 17431485 YP_008722675.1 CDS P423_13345 NC_022648.1 2714593 2715477 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2714593..2715477) Escherichia coli JJ1886 17431490 YP_008722676.1 CDS P423_13350 NC_022648.1 2715729 2716985 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease complement(2715729..2716985) Escherichia coli JJ1886 17431491 YP_008722677.1 CDS P423_13355 NC_022648.1 2717046 2717879 R Derived by automated computational analysis using gene prediction method: Protein Homology.; purine nucleoside phosphorylase complement(2717046..2717879) Escherichia coli JJ1886 17431492 YP_008722678.1 CDS P423_13360 NC_022648.1 2718128 2718892 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2718128..2718892 Escherichia coli JJ1886 17431493 YP_008722679.1 CDS P423_13365 NC_022648.1 2718931 2719857 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(2718931..2719857) Escherichia coli JJ1886 17431494 YP_008722680.1 CDS P423_13370 NC_022648.1 2719947 2720945 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2719947..2720945 Escherichia coli JJ1886 17431495 YP_008722681.1 CDS P423_13375 NC_022648.1 2720942 2721160 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2720942..2721160) Escherichia coli JJ1886 17431496 YP_008722682.1 CDS ligA NC_022648.1 2721162 2723177 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent DNA ligase LigA complement(2721162..2723177) Escherichia coli JJ1886 17431497 YP_008722683.1 CDS P423_13385 NC_022648.1 2723248 2724246 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein ZipA complement(2723248..2724246) Escherichia coli JJ1886 17431498 YP_008722684.1 CDS P423_13390 NC_022648.1 2724476 2725237 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate transporter 2724476..2725237 Escherichia coli JJ1886 17431499 YP_008722685.1 CDS P423_13395 NC_022648.1 2725422 2726393 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase A 2725422..2726393 Escherichia coli JJ1886 17431500 YP_008722686.1 CDS P423_13400 NC_022648.1 2726777 2727034 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 2726777..2727034 Escherichia coli JJ1886 17431501 YP_008722687.1 CDS P423_13405 NC_022648.1 2727079 2728806 D Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate-protein phosphotransferase 2727079..2728806 Escherichia coli JJ1886 17431502 YP_008722688.1 CDS P423_13410 NC_022648.1 2728847 2729356 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIA 2728847..2729356 Escherichia coli JJ1886 17431503 YP_008722689.1 CDS pdxK NC_022648.1 2729399 2730250 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymethylpyrimidine kinase complement(2729399..2730250) Escherichia coli JJ1886 17431504 YP_008722690.1 CDS P423_13420 NC_022648.1 2730355 2730723 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2730355..2730723 Escherichia coli JJ1886 17431505 YP_008722691.1 CDS cysM NC_022648.1 2730726 2731637 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase B complement(2730726..2731637) Escherichia coli JJ1886 17431506 YP_008722692.1 CDS P423_13430 NC_022648.1 2731772 2732869 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter ATP-binding protein complement(2731772..2732869) Escherichia coli JJ1886 17431507 YP_008722693.1 CDS cysW NC_022648.1 2732859 2733734 R Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate/thiosulfate transporter permease subunit complement(2732859..2733734) Escherichia coli JJ1886 17431508 YP_008722694.1 CDS P423_13440 NC_022648.1 2733734 2734567 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate/thiosulfate transporter subunit complement(2733734..2734567) Escherichia coli JJ1886 17431509 YP_008722695.1 CDS P423_13445 NC_022648.1 2734567 2735583 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate transporter subunit complement(2734567..2735583) Escherichia coli JJ1886 17431510 YP_008722696.1 CDS P423_13450 NC_022648.1 2735741 2736532 R Derived by automated computational analysis using gene prediction method: Protein Homology.; short-chain dehydrogenase complement(2735741..2736532) Escherichia coli JJ1886 17431511 YP_008722697.1 CDS murQ NC_022648.1 2736812 2737708 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramic acid-6-phosphate etherase 2736812..2737708 Escherichia coli JJ1886 17431512 YP_008722698.1 CDS murP NC_022648.1 2737712 2739136 D belongs to PEP-dependent PTS system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; requires crr-encoded enzyme IIA-glucose component; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylmuramic acid transporter subunit IIBC 2737712..2739136 Escherichia coli JJ1886 17431513 YP_008722699.1 CDS P423_13465 NC_022648.1 2739314 2740213 R Derived by automated computational analysis using gene prediction method: Protein Homology.; deferrochelatase/peroxidase YfeX complement(2739314..2740213) Escherichia coli JJ1886 17431514 YP_008722700.1 CDS P423_13470 NC_022648.1 2740309 2740884 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RpoE-regulated lipoprotein complement(2740309..2740884) Escherichia coli JJ1886 17431515 YP_008722701.1 CDS P423_13475 NC_022648.1 2740945 2741394 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2740945..2741394) Escherichia coli JJ1886 17431516 YP_008722702.1 CDS P423_13480 NC_022648.1 2741381 2741806 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase complement(2741381..2741806) Escherichia coli JJ1886 17431517 YP_008722703.1 CDS P423_13485 NC_022648.1 2742020 2742889 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 2742020..2742889 Escherichia coli JJ1886 17431518 YP_008722704.1 CDS P423_13490 NC_022648.1 2742890 2743792 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; coproporphyrinogen III oxidase 2742890..2743792 Escherichia coli JJ1886 17431519 YP_008722705.1 CDS P423_13495 NC_022648.1 2743798 2744850 R activates the transcription of the ethanolamine utilization operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2743798..2744850) Escherichia coli JJ1886 17431520 YP_008722706.1 CDS P423_13500 NC_022648.1 2744896 2745396 R ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein complement(2744896..2745396) Escherichia coli JJ1886 17431521 YP_008722707.1 CDS P423_13505 NC_022648.1 2745409 2746068 R carboxysome structural protein involved in ethanolamine utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutL complement(2745409..2746068) Escherichia coli JJ1886 17431522 YP_008722708.1 CDS P423_13510 NC_022648.1 2746078 2746965 R catalyzes the formation of acetaldehyde from ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine ammonia-lyase small subunit complement(2746078..2746965) Escherichia coli JJ1886 17431523 YP_008722709.1 CDS P423_13515 NC_022648.1 2746986 2748347 R with EutC catalyzes the formation of acetaldehyde and ammonia from ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine ammonia lyase large subunit complement(2746986..2748347) Escherichia coli JJ1886 17431524 YP_008722710.1 CDS eutA NC_022648.1 2748359 2749762 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutA complement(2748359..2749762) Escherichia coli JJ1886 17431525 YP_008722711.1 CDS P423_13525 NC_022648.1 2749759 2750985 R may be involved in the transport of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutH complement(2749759..2750985) Escherichia coli JJ1886 17431526 YP_008722712.1 CDS P423_13530 NC_022648.1 2751202 2752389 R aldehyde reductase; catalyzes the conversion of acetaldehyde to ethanol; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanol dehydrogenase complement(2751202..2752389) Escherichia coli JJ1886 17431527 YP_008722713.1 CDS P423_13535 NC_022648.1 2752379 2753215 R possible chaperonin; may be involved in the assembly of the carboxysome; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutJ complement(2752379..2753215) Escherichia coli JJ1886 17431528 YP_008722714.1 CDS P423_13540 NC_022648.1 2753226 2754629 R ethanolamine utilization protein; catalyzes the formation of acetyl-CoA from acetaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase complement(2753226..2754629) Escherichia coli JJ1886 17431529 YP_008722715.1 CDS P423_13545 NC_022648.1 2754641 2754928 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine catabolic microcompartment shell protein EutN complement(2754641..2754928) Escherichia coli JJ1886 17431530 YP_008722716.1 CDS P423_13550 NC_022648.1 2755035 2755370 R ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein complement(2755035..2755370) Escherichia coli JJ1886 17431531 YP_008722717.1 CDS P423_13555 NC_022648.1 2755367 2756383 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransacetylase complement(2755367..2756383) Escherichia coli JJ1886 17431532 YP_008722718.1 CDS P423_13560 NC_022648.1 2756380 2757183 R catalyzes the conversion of cob(I)yrinic acid a,c-diamide to adenosylcob(III)yrinic acid a,c-diamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization cobalamin adenosyltransferase complement(2756380..2757183) Escherichia coli JJ1886 17431533 YP_008722719.1 CDS P423_13565 NC_022648.1 2757180 2757881 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutQ complement(2757180..2757881) Escherichia coli JJ1886 17431534 YP_008722720.1 CDS P423_13570 NC_022648.1 2757856 2758335 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutP complement(2757856..2758335) Escherichia coli JJ1886 17431535 YP_008722721.1 CDS P423_13575 NC_022648.1 2758348 2758683 R ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein complement(2758348..2758683) Escherichia coli JJ1886 17431536 YP_008722722.1 CDS P423_13580 NC_022648.1 2758976 2761255 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malic enzyme complement(2758976..2761255) Escherichia coli JJ1886 17431537 YP_008722723.1 CDS P423_13585 NC_022648.1 2761544 2762494 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transaldolase 2761544..2762494 Escherichia coli JJ1886 17431538 YP_008722724.1 CDS P423_13590 NC_022648.1 2762514 2764517 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase 2762514..2764517 Escherichia coli JJ1886 17431539 YP_008722725.1 CDS P423_13595 NC_022648.1 2764594 2765637 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2764594..2765637) Escherichia coli JJ1886 17431540 YP_008722726.1 CDS P423_13600 NC_022648.1 2765763 2766338 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-mannose pyrophosphatase NudK complement(2765763..2766338) Escherichia coli JJ1886 17431541 YP_008722727.1 CDS P423_13605 NC_022648.1 2766406 2768385 R unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase Fe-S binding subunit complement(2766406..2768385) Escherichia coli JJ1886 17431542 YP_008722728.1 CDS P423_13610 NC_022648.1 2768591 2770291 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate/nitrite sensor protein NarQ 2768591..2770291 Escherichia coli JJ1886 17431543 YP_008722729.1 CDS P423_13615 NC_022648.1 2770455 2773568 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2770455..2773568 Escherichia coli JJ1886 17431544 YP_008722730.1 CDS P423_13620 NC_022648.1 2774107 2774463 D Derived by automated computational analysis using gene prediction method: Protein Homology.; reductase 2774107..2774463 Escherichia coli JJ1886 17431545 YP_008722731.1 CDS P423_13625 NC_022648.1 2774467 2775594 D Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyl-diaminopimelate desuccinylase 2774467..2775594 Escherichia coli JJ1886 17431546 YP_008722732.1 CDS P423_13630 NC_022648.1 2775622 2775822 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2775622..2775822 Escherichia coli JJ1886 17431547 YP_008722733.1 CDS P423_13635 NC_022648.1 2775903 2776601 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase complement(2775903..2776601) Escherichia coli JJ1886 17431548 YP_008722734.1 CDS P423_13640 NC_022648.1 2776675 2778690 R cetylates the wobble base C34 of the elongation-specific methionine tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine tRNA cytidine acetyltransferase complement(2776675..2778690) Escherichia coli JJ1886 17431549 YP_008722735.1 CDS P423_13645 NC_022648.1 2778705 2779568 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2778705..2779568) Escherichia coli JJ1886 17431550 YP_008722736.1 CDS P423_13650 NC_022648.1 2779736 2780449 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(2779736..2780449) Escherichia coli JJ1886 17431551 YP_008722737.1 CDS P423_13655 NC_022648.1 2780662 2781696 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(2780662..2781696) Escherichia coli JJ1886 17431552 YP_008722738.1 CDS P423_13660 NC_022648.1 2781713 2782591 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrodipicolinate synthase complement(2781713..2782591) Escherichia coli JJ1886 17431553 YP_008722739.1 CDS gcvR NC_022648.1 2782737 2783309 D negative transcriptional regulator of the gcvTHP operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system regulatory protein 2782737..2783309 Escherichia coli JJ1886 17431554 YP_008722740.1 CDS bcp NC_022648.1 2783309 2783779 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin-dependent thiol peroxidase 2783309..2783779 Escherichia coli JJ1886 17431555 YP_008722741.1 CDS P423_13675 NC_022648.1 2783877 2784938 R Derived by automated computational analysis using gene prediction method: Protein Homology.; permase complement(2783877..2784938) Escherichia coli JJ1886 17431556 YP_008722742.1 CDS P423_13680 NC_022648.1 2785151 2786614 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2785151..2786614 Escherichia coli JJ1886 17431557 YP_008722743.1 CDS P423_13685 NC_022648.1 2786635 2786994 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arsenate reductase 2786635..2786994 Escherichia coli JJ1886 17431558 YP_008722744.1 CDS P423_13690 NC_022648.1 2787132 2787878 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication initiation factor complement(2787132..2787878) Escherichia coli JJ1886 17431559 YP_008722745.1 CDS P423_13695 NC_022648.1 2787928 2789217 R Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil transporter complement(2787928..2789217) Escherichia coli JJ1886 17431560 YP_008722746.1 CDS upp NC_022648.1 2789303 2789929 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil phosphoribosyltransferase complement(2789303..2789929) Escherichia coli JJ1886 17431561 YP_008722747.1 CDS P423_13705 NC_022648.1 2790254 2791291 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole synthetase 2790254..2791291 Escherichia coli JJ1886 17431562 YP_008722748.1 CDS purN NC_022648.1 2791291 2791929 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylglycinamide formyltransferase 2791291..2791929 Escherichia coli JJ1886 17431563 YP_008722749.1 CDS P423_13715 NC_022648.1 2792101 2794167 D Derived by automated computational analysis using gene prediction method: Protein Homology.; polyphosphate kinase 2792101..2794167 Escherichia coli JJ1886 17431564 YP_008722750.1 CDS P423_13720 NC_022648.1 2794172 2795713 D Derived by automated computational analysis using gene prediction method: Protein Homology.; exopolyphosphatase 2794172..2795713 Escherichia coli JJ1886 17431565 YP_008722751.1 CDS P423_13725 NC_022648.1 2795752 2797995 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase complement(2795752..2797995) Escherichia coli JJ1886 17431566 YP_008722752.1 CDS P423_13730 NC_022648.1 2798177 2798329 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2798177..2798329) Escherichia coli JJ1886 17431567 YP_008722753.1 CDS P423_13735 NC_022648.1 2798347 2798538 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2798347..2798538 Escherichia coli JJ1886 17431568 YP_008722754.1 CDS P423_13740 NC_022648.1 2798840 2799358 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2798840..2799358 Escherichia coli JJ1886 17431569 YP_008722755.1 CDS P423_13745 NC_022648.1 2799374 2799913 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2799374..2799913 Escherichia coli JJ1886 17431570 YP_008722756.1 CDS guaA NC_022648.1 2800006 2801583 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; GMP synthase complement(2800006..2801583) Escherichia coli JJ1886 17431571 YP_008722757.1 CDS P423_13755 NC_022648.1 2801652 2803163 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine 5'-monophosphate dehydrogenase complement(2801652..2803163) Escherichia coli JJ1886 17431572 YP_008722758.1 CDS xseA NC_022648.1 2803280 2804647 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII large subunit 2803280..2804647 Escherichia coli JJ1886 17431573 YP_008722759.1 CDS P423_13765 NC_022648.1 2804701 2812782 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RatA-like protein complement(2804701..2812782) Escherichia coli JJ1886 17431574 YP_008722760.1 CDS P423_13770 NC_022648.1 2812892 2813884 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; SinI-like protein complement(2812892..2813884) Escherichia coli JJ1886 17431575 YP_008722761.1 CDS P423_13775 NC_022648.1 2813940 2816114 R involved in invasion of epithelial cells; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; intimin complement(2813940..2816114) Escherichia coli JJ1886 17431576 YP_008722762.1 CDS P423_13780 NC_022648.1 2816320 2816535 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2816320..2816535) Escherichia coli JJ1886 17431577 YP_008722763.1 CDS P423_13785 NC_022648.1 2816598 2818109 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein Der complement(2816598..2818109) Escherichia coli JJ1886 17431578 YP_008722764.1 CDS P423_13790 NC_022648.1 2818188 2819366 R Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamB complement(2818188..2819366) Escherichia coli JJ1886 17431579 YP_008722765.1 CDS P423_13795 NC_022648.1 2819377 2819997 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2819377..2819997) Escherichia coli JJ1886 17431580 YP_008722766.1 CDS hisS NC_022648.1 2820015 2821289 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidyl-tRNA synthetase complement(2820015..2821289) Escherichia coli JJ1886 17431581 YP_008722767.1 CDS P423_13805 NC_022648.1 2821400 2822518 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2821400..2822518) Escherichia coli JJ1886 17431582 YP_008722768.1 CDS P423_13810 NC_022648.1 2822545 2823552 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoskeletal protein RodZ complement(2822545..2823552) Escherichia coli JJ1886 17431583 YP_008722769.1 CDS P423_13815 NC_022648.1 2823837 2824991 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S rRNA methyltransferase complement(2823837..2824991) Escherichia coli JJ1886 17431584 YP_008722770.1 CDS P423_13820 NC_022648.1 2825141 2825572 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside diphosphate kinase complement(2825141..2825572) Escherichia coli JJ1886 17431585 YP_008722771.1 CDS P423_13825 NC_022648.1 2825721 2828033 R penicillin-insensitive transglycosylase/transpeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 1C complement(2825721..2828033) Escherichia coli JJ1886 17431586 YP_008722772.1 CDS P423_13830 NC_022648.1 2828034 2832995 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2828034..2832995) Escherichia coli JJ1886 17431587 YP_008722773.1 CDS sseA NC_022648.1 2833202 2834047 D catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-mercaptopyruvate sulfurtransferase 2833202..2834047 Escherichia coli JJ1886 17431588 YP_008722774.1 CDS P423_13840 NC_022648.1 2834540 2835316 R enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.; enhanced serine sensitivity protein SseB complement(2834540..2835316) Escherichia coli JJ1886 17431589 YP_008722775.1 CDS P423_13845 NC_022648.1 2835458 2836741 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase B complement(2835458..2836741) Escherichia coli JJ1886 17431590 YP_008722776.1 CDS P423_13850 NC_022648.1 2836800 2837000 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2836800..2837000) Escherichia coli JJ1886 17431591 YP_008722777.1 CDS P423_13855 NC_022648.1 2837012 2837347 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2Fe-2S ferredoxin complement(2837012..2837347) Escherichia coli JJ1886 17431592 YP_008722778.1 CDS hscA NC_022648.1 2837349 2839199 R involved in the maturation of iron-sulfur cluster-containing proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein HscA complement(2837349..2839199) Escherichia coli JJ1886 17431593 YP_008722779.1 CDS hscB NC_022648.1 2839216 2839731 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; co-chaperone HscB complement(2839216..2839731) Escherichia coli JJ1886 17431594 YP_008722780.1 CDS iscA NC_022648.1 2839827 2840150 R forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster assembly protein complement(2839827..2840150) Escherichia coli JJ1886 17431595 YP_008722781.1 CDS P423_13875 NC_022648.1 2840167 2840553 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FeS cluster assembly scaffold IscU complement(2840167..2840553) Escherichia coli JJ1886 17431596 YP_008722782.1 CDS P423_13880 NC_022648.1 2840581 2841795 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase complement(2840581..2841795) Escherichia coli JJ1886 17431597 YP_008722783.1 CDS P423_13885 NC_022648.1 2841907 2842395 R regulates the expression of the iscRSUA operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2841907..2842395) Escherichia coli JJ1886 17431598 YP_008722784.1 CDS P423_13890 NC_022648.1 2842666 2843406 R catalyzes the fromation of 2'O-methylated cytidine or 2'O-methylated uridine at position 32 in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase complement(2842666..2843406) Escherichia coli JJ1886 17431599 YP_008722785.1 CDS P423_13895 NC_022648.1 2843525 2844328 D Derived by automated computational analysis using gene prediction method: Protein Homology.; inositol monophosphatase 2843525..2844328 Escherichia coli JJ1886 17431600 YP_008722786.1 CDS P423_13900 NC_022648.1 2844473 2845327 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2844473..2845327 Escherichia coli JJ1886 17431601 YP_008722787.1 CDS P423_13905 NC_022648.1 2845518 2846798 D Derived by automated computational analysis using gene prediction method: Protein Homology.; stationary phase inducible protein CsiE 2845518..2846798 Escherichia coli JJ1886 17431602 YP_008722788.1 CDS P423_13910 NC_022648.1 2846790 2847929 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phenylpropionic acid MFS transporter complement(2846790..2847929) Escherichia coli JJ1886 17431603 YP_008722789.1 CDS P423_13915 NC_022648.1 2848299 2848721 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2848299..2848721 Escherichia coli JJ1886 17431604 YP_008722790.1 CDS P423_13920 NC_022648.1 2848769 2849641 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2848769..2849641) Escherichia coli JJ1886 17431605 YP_008722791.1 CDS P423_13925 NC_022648.1 2849653 2850747 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(2849653..2850747) Escherichia coli JJ1886 17431606 YP_008722792.1 CDS P423_13930 NC_022648.1 2850780 2851778 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease complement(2850780..2851778) Escherichia coli JJ1886 17431607 YP_008722793.1 CDS P423_13935 NC_022648.1 2851781 2853310 R Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATP-binding protein complement(2851781..2853310) Escherichia coli JJ1886 17431608 YP_008722794.1 CDS P423_13940 NC_022648.1 2853333 2854316 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein complement(2853333..2854316) Escherichia coli JJ1886 17431609 YP_008722795.1 CDS P423_13945 NC_022648.1 2854413 2857694 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2854413..2857694) Escherichia coli JJ1886 17431610 YP_008722796.1 CDS P423_13950 NC_022648.1 2857812 2859005 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2857812..2859005 Escherichia coli JJ1886 17431611 YP_008722797.1 CDS glyA NC_022648.1 2859069 2860322 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine hydroxymethyltransferase complement(2859069..2860322) Escherichia coli JJ1886 17431612 YP_008722798.1 CDS P423_13960 NC_022648.1 2860651 2861841 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 2860651..2861841 Escherichia coli JJ1886 17431613 YP_008722799.1 CDS P423_13965 NC_022648.1 2861886 2862224 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulatory protein P-II complement(2861886..2862224) Escherichia coli JJ1886 17431614 YP_008722800.1 CDS P423_13970 NC_022648.1 2862285 2863619 R with GlrK is part of a two-component signal transduction system regulating glmY; Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator complement(2862285..2863619) Escherichia coli JJ1886 17431615 YP_008722801.1 CDS P423_13975 NC_022648.1 2863609 2864322 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2863609..2864322) Escherichia coli JJ1886 17431616 YP_008722802.1 CDS P423_13980 NC_022648.1 2864487 2865914 R part of the GlrKR two-component signal transduction system involved in the regulation of glmY; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(2864487..2865914) Escherichia coli JJ1886 17431617 YP_008722803.1 CDS P423_13985 NC_022648.1 2866490 2870374 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylformylglycinamidine synthase complement(2866490..2870374) Escherichia coli JJ1886 17431618 YP_008722804.1 CDS P423_13990 NC_022648.1 2870635 2872191 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2870635..2872191 Escherichia coli JJ1886 17431619 YP_008722805.1 CDS P423_13995 NC_022648.1 2872188 2872724 R Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine deaminase complement(2872188..2872724) Escherichia coli JJ1886 17431620 YP_008722806.1 CDS P423_14000 NC_022648.1 2872749 2873384 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2872749..2873384) Escherichia coli JJ1886 17431621 YP_008722807.1 CDS P423_14005 NC_022648.1 2873593 2874441 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2873593..2874441 Escherichia coli JJ1886 17431622 YP_008722808.1 CDS P423_14010 NC_022648.1 2874497 2874757 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin 2874497..2874757 Escherichia coli JJ1886 17431623 YP_008722809.1 CDS P423_14015 NC_022648.1 2874951 2875031 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; small toxic protein shoB complement(2874951..2875031) Escherichia coli JJ1886 17431624 YP_008722810.1 CDS acpS NC_022648.1 2875452 2875832 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4'-phosphopantetheinyl transferase complement(2875452..2875832) Escherichia coli JJ1886 17431625 YP_008722811.1 CDS P423_14025 NC_022648.1 2875832 2876563 R involved in the de novo synthesis of pyridoxine (Vitamin B6); Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxine 5'-phosphate synthase complement(2875832..2876563) Escherichia coli JJ1886 17431626 YP_008722812.1 CDS recO NC_022648.1 2876575 2877303 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RecO complement(2876575..2877303) Escherichia coli JJ1886 17431627 YP_008722813.1 CDS P423_14035 NC_022648.1 2877315 2878220 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase Era complement(2877315..2878220) Escherichia coli JJ1886 17431628 YP_008722814.1 CDS rnc NC_022648.1 2878217 2878897 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease III complement(2878217..2878897) Escherichia coli JJ1886 17431629 YP_008722815.1 CDS P423_14045 NC_022648.1 2879169 2880143 R catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; signal peptidase complement(2879169..2880143) Escherichia coli JJ1886 17431630 YP_008722816.1 CDS P423_14050 NC_022648.1 2880159 2881958 R Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor 4 complement(2880159..2881958) Escherichia coli JJ1886 17431631 YP_008722817.1 CDS P423_14055 NC_022648.1 2882156 2882635 R involved in the reduction of the SoxR iron-sulfur cluster; Derived by automated computational analysis using gene prediction method: Protein Homology.; SoxR reducing system protein RseC complement(2882156..2882635) Escherichia coli JJ1886 17431632 YP_008722818.1 CDS rseB NC_022648.1 2882632 2883588 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-sigma E factor complement(2882632..2883588) Escherichia coli JJ1886 17431633 YP_008722819.1 CDS P423_14065 NC_022648.1 2883588 2884238 R Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-RNA polymerase sigma factor SigE complement(2883588..2884238) Escherichia coli JJ1886 17431634 YP_008722820.1 CDS P423_14070 NC_022648.1 2884271 2884846 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor AlgU complement(2884271..2884846) Escherichia coli JJ1886 17431635 YP_008722821.1 CDS P423_14075 NC_022648.1 2885254 2886876 D catalyzes the formation of oxaloacetate from L-aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-aspartate oxidase 2885254..2886876 Escherichia coli JJ1886 17431636 YP_008722822.1 CDS P423_14080 NC_022648.1 2886861 2887598 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (adenine-N6)-methyltransferase complement(2886861..2887598) Escherichia coli JJ1886 17431637 YP_008722823.1 CDS P423_14085 NC_022648.1 2887730 2889064 D facilitates an early step in the assembly of the 50S subunit of the ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 2887730..2889064 Escherichia coli JJ1886 17431638 YP_008722824.1 CDS P423_14090 NC_022648.1 2889097 2890023 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(2889097..2890023) Escherichia coli JJ1886 17431639 YP_008722825.1 CDS P423_14095 NC_022648.1 2890081 2890668 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine/O-acetylserine exporter 2890081..2890668 Escherichia coli JJ1886 17431640 YP_008722826.1 CDS P423_14100 NC_022648.1 2890724 2891107 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; autonomous glycyl radical cofactor GrcA complement(2890724..2891107) Escherichia coli JJ1886 17431641 YP_008722827.1 CDS P423_14105 NC_022648.1 2891412 2892101 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil-DNA glycosylase 2891412..2892101 Escherichia coli JJ1886 17431642 YP_008722828.1 CDS P423_14110 NC_022648.1 2892149 2893186 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase complement(2892149..2893186) Escherichia coli JJ1886 17431643 YP_008722829.1 CDS P423_14115 NC_022648.1 2893176 2893334 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2893176..2893334) Escherichia coli JJ1886 17431644 YP_008722830.1 CDS P423_14120 NC_022648.1 2893393 2893812 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin 2893393..2893812 Escherichia coli JJ1886 17431645 YP_008722831.1 CDS P423_14125 NC_022648.1 2893857 2894579 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2893857..2894579 Escherichia coli JJ1886 17431646 YP_008722832.1 CDS P423_14130 NC_022648.1 2894611 2897271 D catalyzes the acetylation of lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein lysine acetyltransferase 2894611..2897271 Escherichia coli JJ1886 17431647 YP_008722833.1 CDS pssA NC_022648.1 2897385 2898740 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylserine synthase 2897385..2898740 Escherichia coli JJ1886 17431648 YP_008722834.1 CDS P423_14140 NC_022648.1 2898786 2899109 D required for high salt suppression of motility; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 2898786..2899109 Escherichia coli JJ1886 17431649 YP_008722835.1 CDS P423_14145 NC_022648.1 2899106 2900404 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoglutarate transporter complement(2899106..2900404) Escherichia coli JJ1886 17431650 YP_008722836.1 CDS P423_14175 NC_022648.1 2906191 2908764 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protein disaggregation chaperone complement(2906191..2908764) Escherichia coli JJ1886 17431655 YP_008722837.1 CDS P423_14180 NC_022648.1 2908894 2909625 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2908894..2909625) Escherichia coli JJ1886 17431656 YP_008722838.1 CDS rluD NC_022648.1 2909622 2910602 R responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridine synthase D complement(2909622..2910602) Escherichia coli JJ1886 17431657 YP_008722839.1 CDS P423_14190 NC_022648.1 2910737 2911474 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamD 2910737..2911474 Escherichia coli JJ1886 17431658 YP_008722840.1 CDS P423_14195 NC_022648.1 2911744 2912085 D associated with 30S ribosomal subunit; interferes with translation elongation; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation inhibitor protein RaiA 2911744..2912085 Escherichia coli JJ1886 17431659 YP_008722841.1 CDS pheA NC_022648.1 2912335 2913495 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional chorismate mutase/prephenate dehydratase 2912335..2913495 Escherichia coli JJ1886 17431660 YP_008722842.1 CDS tyrA NC_022648.1 2913538 2914659 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate mutase complement(2913538..2914659) Escherichia coli JJ1886 17431661 YP_008722843.1 CDS P423_14210 NC_022648.1 2914670 2915740 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2914670..2915740) Escherichia coli JJ1886 17431662 YP_008722844.1 CDS P423_14215 NC_022648.1 2915950 2916315 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 2915950..2916315 Escherichia coli JJ1886 17431663 YP_008722845.1 CDS P423_14220 NC_022648.1 2916462 2916980 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2916462..2916980 Escherichia coli JJ1886 17431664 YP_008722846.1 CDS P423_14225 NC_022648.1 2916970 2918196 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 2916970..2918196 Escherichia coli JJ1886 17431665 YP_008722847.1 CDS P423_14230 NC_022648.1 2918212 2918694 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2918212..2918694 Escherichia coli JJ1886 17431666 YP_008722848.1 CDS P423_14235 NC_022648.1 2918771 2919118 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L19 complement(2918771..2919118) Escherichia coli JJ1886 17431667 YP_008722849.1 CDS trmD NC_022648.1 2919160 2919927 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (guanine-N1)-methyltransferase complement(2919160..2919927) Escherichia coli JJ1886 17431668 YP_008722850.1 CDS rimM NC_022648.1 2919958 2920506 R Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA-processing protein M complement(2919958..2920506) Escherichia coli JJ1886 17431669 YP_008722851.1 CDS P423_14250 NC_022648.1 2920525 2920773 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S16 complement(2920525..2920773) Escherichia coli JJ1886 17431670 YP_008722852.1 CDS P423_14255 NC_022648.1 2920910 2922271 R Derived by automated computational analysis using gene prediction method: Protein Homology.; signal recognition particle protein Srp54 complement(2920910..2922271) Escherichia coli JJ1886 17431671 YP_008722853.1 CDS P423_14260 NC_022648.1 2922363 2923229 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2922363..2923229 Escherichia coli JJ1886 17431672 YP_008722854.1 CDS P423_14265 NC_022648.1 2923274 2924536 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2923274..2924536 Escherichia coli JJ1886 17431673 YP_008722855.1 CDS P423_14270 NC_022648.1 2924590 2925183 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein GrpE complement(2924590..2925183) Escherichia coli JJ1886 17431674 YP_008722856.1 CDS ppnK NC_022648.1 2925306 2926184 D catalyzes the phosphorylation of NAD to NADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; inorganic polyphosphate/ATP-NAD kinase 2925306..2926184 Escherichia coli JJ1886 17431675 YP_008722857.1 CDS P423_14280 NC_022648.1 2926270 2927931 D Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase 2926270..2927931 Escherichia coli JJ1886 17431676 YP_008722858.1 CDS P423_14285 NC_022648.1 2928080 2928421 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamE 2928080..2928421 Escherichia coli JJ1886 17431677 YP_008722859.1 CDS P423_14290 NC_022648.1 2928483 2928773 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2928483..2928773) Escherichia coli JJ1886 17431678 YP_008722860.1 CDS P423_14295 NC_022648.1 2928763 2929239 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2928763..2929239) Escherichia coli JJ1886 17431679 YP_008722861.1 CDS smpB NC_022648.1 2929371 2929853 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein 2929371..2929853 Escherichia coli JJ1886 17431680 YP_008722862.1 CDS P423_14305 NC_022648.1 2930731 2931000 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2930731..2931000 Escherichia coli JJ1886 17431681 YP_008722863.1 CDS P423_14310 NC_022648.1 2931138 2931500 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2931138..2931500) Escherichia coli JJ1886 17431682 YP_008722864.1 CDS P423_14315 NC_022648.1 2931493 2932401 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2931493..2932401) Escherichia coli JJ1886 17431683 YP_008722865.1 CDS P423_14320 NC_022648.1 2932623 2932811 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2932623..2932811) Escherichia coli JJ1886 17431684 YP_008722866.1 CDS P423_14325 NC_022648.1 2932964 2933548 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail assembly protein complement(2932964..2933548) Escherichia coli JJ1886 17431685 YP_008722867.1 CDS P423_14330 NC_022648.1 2933548 2936574 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2933548..2936574) Escherichia coli JJ1886 17431686 YP_008722868.1 CDS P423_14335 NC_022648.1 2936639 2937238 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2936639..2937238) Escherichia coli JJ1886 17431687 YP_008722869.1 CDS P423_14340 NC_022648.1 2937305 2940703 R Derived by automated computational analysis using gene prediction method: Protein Homology.; host specificity protein J complement(2937305..2940703) Escherichia coli JJ1886 17431688 YP_008722870.1 CDS P423_14345 NC_022648.1 2940764 2941312 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein complement(2940764..2941312) Escherichia coli JJ1886 17431689 YP_008722871.1 CDS P423_14350 NC_022648.1 2941309 2942052 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2941309..2942052) Escherichia coli JJ1886 17431690 YP_008722872.1 CDS P423_14355 NC_022648.1 2942057 2942755 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2942057..2942755) Escherichia coli JJ1886 17431691 YP_008722873.1 CDS P423_14360 NC_022648.1 2942765 2943094 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2942765..2943094) Escherichia coli JJ1886 17431692 YP_008722874.1 CDS P423_14365 NC_022648.1 2943094 2946159 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein complement(2943094..2946159) Escherichia coli JJ1886 17431693 YP_008722875.1 CDS P423_14370 NC_022648.1 2946131 2946406 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein complement(2946131..2946406) Escherichia coli JJ1886 17431694 YP_008722876.1 CDS P423_14375 NC_022648.1 2946469 2946858 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; minor tail protein complement(2946469..2946858) Escherichia coli JJ1886 17431695 YP_008722877.1 CDS P423_14380 NC_022648.1 2946916 2947659 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2946916..2947659) Escherichia coli JJ1886 17431696 YP_008722878.1 CDS P423_14385 NC_022648.1 2947670 2948071 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2947670..2948071) Escherichia coli JJ1886 17431697 YP_008722879.1 CDS P423_14390 NC_022648.1 2948068 2948646 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2948068..2948646) Escherichia coli JJ1886 17431698 YP_008722880.1 CDS P423_14395 NC_022648.1 2948658 2948933 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA breaking-rejoining protein complement(2948658..2948933) Escherichia coli JJ1886 17431699 YP_008722881.1 CDS P423_14400 NC_022648.1 2948926 2949294 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2948926..2949294) Escherichia coli JJ1886 17431700 YP_008722882.1 CDS P423_14405 NC_022648.1 2949337 2951364 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase S14 complement(2949337..2951364) Escherichia coli JJ1886 17431701 YP_008722883.1 CDS P423_14410 NC_022648.1 2951309 2952817 R Derived by automated computational analysis using gene prediction method: Protein Homology.; capsid protein complement(2951309..2952817) Escherichia coli JJ1886 17431702 YP_008722884.1 CDS P423_14415 NC_022648.1 2952817 2953029 R Derived by automated computational analysis using gene prediction method: Protein Homology.; primosomal replication protein PriB/PriC domain protein complement(2952817..2953029) Escherichia coli JJ1886 17431703 YP_008722885.1 CDS P423_14420 NC_022648.1 2953026 2955128 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA packaging protein complement(2953026..2955128) Escherichia coli JJ1886 17431704 YP_008722886.1 CDS P423_14425 NC_022648.1 2955128 2955622 R Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase complement(2955128..2955622) Escherichia coli JJ1886 17431705 YP_008722887.1 CDS P423_14430 NC_022648.1 2956298 2956441 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2956298..2956441) Escherichia coli JJ1886 17431706 YP_008722888.1 CDS P423_14435 NC_022648.1 2956438 2956905 R Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase complement(2956438..2956905) Escherichia coli JJ1886 17431707 YP_008722889.1 CDS P423_14440 NC_022648.1 2956902 2957435 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme complement(2956902..2957435) Escherichia coli JJ1886 17431708 YP_008722890.1 CDS P423_14445 NC_022648.1 2957499 2957849 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2957499..2957849) Escherichia coli JJ1886 17431709 YP_008722891.1 CDS P423_14450 NC_022648.1 2957854 2958069 R Derived by automated computational analysis using gene prediction method: Protein Homology.; holin complement(2957854..2958069) Escherichia coli JJ1886 17431710 YP_008722892.1 CDS P423_14455 NC_022648.1 2958137 2959189 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA adenine methylase complement(2958137..2959189) Escherichia coli JJ1886 17431711 YP_008722893.1 CDS P423_14460 NC_022648.1 2959340 2959543 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2959340..2959543) Escherichia coli JJ1886 17431712 YP_008722894.1 CDS P423_14465 NC_022648.1 2959767 2960192 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2959767..2960192) Escherichia coli JJ1886 17431713 YP_008722895.1 CDS P423_14470 NC_022648.1 2960473 2961225 R Derived by automated computational analysis using gene prediction method: Protein Homology.; antitermination protein complement(2960473..2961225) Escherichia coli JJ1886 17431714 YP_008722896.1 CDS P423_14475 NC_022648.1 2961239 2962156 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2961239..2962156) Escherichia coli JJ1886 17431715 YP_008722897.1 CDS P423_14480 NC_022648.1 2962236 2963045 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2962236..2963045) Escherichia coli JJ1886 17431716 YP_008722898.1 CDS P423_14485 NC_022648.1 2963065 2963454 R Derived by automated computational analysis using gene prediction method: Protein Homology.; crossover junction endodeoxyribonuclease complement(2963065..2963454) Escherichia coli JJ1886 17431717 YP_008722899.1 CDS P423_14490 NC_022648.1 2963451 2963777 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LexA family transcriptional regulator complement(2963451..2963777) Escherichia coli JJ1886 17431718 YP_008722900.1 CDS P423_14495 NC_022648.1 2963774 2964427 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase complement(2963774..2964427) Escherichia coli JJ1886 17431719 YP_008722901.1 CDS P423_14500 NC_022648.1 2964427 2964915 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2964427..2964915) Escherichia coli JJ1886 17431720 YP_008722902.1 CDS P423_14505 NC_022648.1 2964918 2965736 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(2964918..2965736) Escherichia coli JJ1886 17431721 YP_008722903.1 CDS P423_14510 NC_022648.1 2965733 2965957 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2965733..2965957) Escherichia coli JJ1886 17431722 YP_008722904.1 CDS P423_14515 NC_022648.1 2965954 2967105 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase complement(2965954..2967105) Escherichia coli JJ1886 17431723 YP_008722905.1 CDS P423_14520 NC_022648.1 2967102 2967653 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2967102..2967653) Escherichia coli JJ1886 17431724 YP_008722906.1 CDS P423_14525 NC_022648.1 2967646 2967906 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(2967646..2967906) Escherichia coli JJ1886 17431725 YP_008722907.1 CDS P423_14530 NC_022648.1 2968004 2968696 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2968004..2968696 Escherichia coli JJ1886 17431726 YP_008722908.1 CDS P423_14535 NC_022648.1 2969419 2969781 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2969419..2969781 Escherichia coli JJ1886 17431727 YP_008722909.1 CDS P423_14540 NC_022648.1 2969847 2970671 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2969847..2970671 Escherichia coli JJ1886 17431728 YP_008722910.1 CDS P423_14545 NC_022648.1 2970800 2971336 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2970800..2971336 Escherichia coli JJ1886 17431729 YP_008722911.1 CDS P423_14550 NC_022648.1 2971327 2971689 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2971327..2971689 Escherichia coli JJ1886 17431730 YP_008722912.1 CDS P423_14555 NC_022648.1 2972128 2973294 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 2972128..2973294 Escherichia coli JJ1886 17431731 YP_008722913.1 CDS P423_14560 NC_022648.1 2973302 2975086 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATPase AAA 2973302..2975086 Escherichia coli JJ1886 17431732 YP_008722914.1 CDS P423_14565 NC_022648.1 2975166 2976065 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA methyltransferase 2975166..2976065 Escherichia coli JJ1886 17431733 YP_008722915.1 CDS P423_14570 NC_022648.1 2976854 2977831 D in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation induced protein 2976854..2977831 Escherichia coli JJ1886 17431734 YP_008722916.1 CDS P423_14575 NC_022648.1 2977851 2979116 D catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyglutarate oxidase 2977851..2979116 Escherichia coli JJ1886 17431735 YP_008722917.1 CDS gabD NC_022648.1 2979142 2980590 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate-semialdehyde dehdyrogenase 2979142..2980590 Escherichia coli JJ1886 17431736 YP_008722918.1 CDS P423_14585 NC_022648.1 2980604 2981884 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-aminobutyrate aminotransferase 2980604..2981884 Escherichia coli JJ1886 17431737 YP_008722919.1 CDS P423_14590 NC_022648.1 2982121 2983521 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-aminobutyrate transporter 2982121..2983521 Escherichia coli JJ1886 17431738 YP_008722920.1 CDS P423_14595 NC_022648.1 2983542 2984204 D regulator of gab gene expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2983542..2984204 Escherichia coli JJ1886 17431739 YP_008722921.1 CDS P423_14600 NC_022648.1 2984205 2984654 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-binding protein LysM complement(2984205..2984654) Escherichia coli JJ1886 17431740 YP_008722922.1 CDS P423_14605 NC_022648.1 2984738 2984896 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2984738..2984896) Escherichia coli JJ1886 17431741 YP_008722923.1 CDS P423_14610 NC_022648.1 2985079 2985378 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2985079..2985378 Escherichia coli JJ1886 17431742 YP_008722924.1 CDS P423_14615 NC_022648.1 2985388 2985912 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2985388..2985912 Escherichia coli JJ1886 17431743 YP_008722925.1 CDS P423_14620 NC_022648.1 2985959 2986363 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(2985959..2986363) Escherichia coli JJ1886 17431744 YP_008722926.1 CDS P423_14625 NC_022648.1 2987031 2987480 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2987031..2987480 Escherichia coli JJ1886 17431745 YP_008722927.1 CDS P423_14630 NC_022648.1 2987517 2987861 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2987517..2987861) Escherichia coli JJ1886 17431746 YP_008722928.1 CDS P423_14635 NC_022648.1 2988013 2988342 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2988013..2988342 Escherichia coli JJ1886 17431747 YP_008722929.1 CDS P423_14640 NC_022648.1 2988589 2988834 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin 2988589..2988834 Escherichia coli JJ1886 17431748 YP_008722930.1 CDS nrdI NC_022648.1 2988831 2989241 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide reductase stimulatory protein 2988831..2989241 Escherichia coli JJ1886 17431749 YP_008722931.1 CDS P423_14650 NC_022648.1 2989214 2991358 D Catalyzes the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit alpha 2989214..2991358 Escherichia coli JJ1886 17431750 YP_008722932.1 CDS P423_14655 NC_022648.1 2991368 2992327 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit beta 2991368..2992327 Escherichia coli JJ1886 17431751 YP_008722933.1 CDS P423_14660 NC_022648.1 2992683 2993885 D with ProWX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter ATP-binding protein 2992683..2993885 Escherichia coli JJ1886 17431752 YP_008722934.1 CDS P423_14665 NC_022648.1 2993878 2994942 D with ProVX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine betaine transporter membrane protein 2993878..2994942 Escherichia coli JJ1886 17431753 YP_008722935.1 CDS proX NC_022648.1 2994999 2995991 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter substrate-binding protein 2994999..2995991 Escherichia coli JJ1886 17431754 YP_008722936.1 CDS P423_14675 NC_022648.1 2996183 2997367 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 2996183..2997367 Escherichia coli JJ1886 17431755 YP_008722937.1 CDS P423_14680 NC_022648.1 2997491 2998228 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2997491..2998228 Escherichia coli JJ1886 17431756 YP_008722938.1 CDS P423_14685 NC_022648.1 2998218 2998553 D Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease 2998218..2998553 Escherichia coli JJ1886 17431757 YP_008722939.1 CDS P423_14690 NC_022648.1 2998644 2999174 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2998644..2999174 Escherichia coli JJ1886 17431758 YP_008722940.1 CDS P423_14695 NC_022648.1 2999301 3000473 D with ErmA and TolC forms a multidrug efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2999301..3000473 Escherichia coli JJ1886 17431759 YP_008722941.1 CDS emrB NC_022648.1 3000490 3002028 D multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein B 3000490..3002028 Escherichia coli JJ1886 17431760 YP_008722942.1 CDS P423_14705 NC_022648.1 3002286 3002993 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2'-5' RNA ligase 3002286..3002993 Escherichia coli JJ1886 17431761 YP_008722943.1 CDS P423_14710 NC_022648.1 3002990 3004102 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3002990..3004102 Escherichia coli JJ1886 17431762 YP_008722944.1 CDS P423_14715 NC_022648.1 3004153 3004668 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-ribosylhomocysteinase complement(3004153..3004668) Escherichia coli JJ1886 17431763 YP_008722945.1 CDS P423_14720 NC_022648.1 3004818 3006374 R involved in the first step of glutathione biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate--cysteine ligase complement(3004818..3006374) Escherichia coli JJ1886 17431764 YP_008722946.1 CDS P423_14725 NC_022648.1 3006447 3006875 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3006447..3006875) Escherichia coli JJ1886 17431765 YP_008722947.1 CDS P423_14730 NC_022648.1 3006872 3007438 R YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-1-P/6-phosphogluconate phosphatase complement(3006872..3007438) Escherichia coli JJ1886 17431766 YP_008722948.1 CDS P423_14765 NC_022648.1 3008627 3008812 R affects carbohydrate metabolism; has regulatory role in many processes; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon storage regulator complement(3008627..3008812) Escherichia coli JJ1886 17431772 YP_008722949.1 CDS P423_14770 NC_022648.1 3009047 3011677 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alanyl-tRNA synthetase complement(3009047..3011677) Escherichia coli JJ1886 17431773 YP_008722950.1 CDS recX NC_022648.1 3011806 3012306 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombination protein RecX complement(3011806..3012306) Escherichia coli JJ1886 17431774 YP_008722951.1 CDS recA NC_022648.1 3012375 3013436 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RecA complement(3012375..3013436) Escherichia coli JJ1886 17431775 YP_008722952.1 CDS P423_14785 NC_022648.1 3013516 3014013 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3013516..3014013) Escherichia coli JJ1886 17431776 YP_008722953.1 CDS P423_14790 NC_022648.1 3014195 3014434 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3014195..3014434 Escherichia coli JJ1886 17431777 YP_008722954.1 CDS P423_14795 NC_022648.1 3014473 3015558 R membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein hydrolase B complement(3014473..3015558) Escherichia coli JJ1886 17431778 YP_008722955.1 CDS P423_14800 NC_022648.1 3015595 3015738 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3015595..3015738 Escherichia coli JJ1886 17431779 YP_008722956.1 CDS srlA NC_022648.1 3015815 3016378 D catalyzes the phosphorylation of incoming sugar substrates along with their translocation across the cell membrane; the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIC 3015815..3016378 Escherichia coli JJ1886 17431780 YP_008722957.1 CDS srlE NC_022648.1 3016375 3017334 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIB 3016375..3017334 Escherichia coli JJ1886 17431781 YP_008722958.1 CDS P423_14815 NC_022648.1 3017345 3017716 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIA 3017345..3017716 Escherichia coli JJ1886 17431782 YP_008722959.1 CDS P423_14820 NC_022648.1 3017720 3018499 D catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sorbitol-6-phosphate dehydrogenase 3017720..3018499 Escherichia coli JJ1886 17431783 YP_008722960.1 CDS P423_14825 NC_022648.1 3018605 3018964 D regulator for glucitol utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3018605..3018964 Escherichia coli JJ1886 17431784 YP_008722961.1 CDS srlR NC_022648.1 3019031 3019804 D regulates genes involved in glucitol utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3019031..3019804 Escherichia coli JJ1886 17431785 YP_008722962.1 CDS P423_14835 NC_022648.1 3019797 3020762 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose 5-phosphate isomerase 3019797..3020762 Escherichia coli JJ1886 17431786 YP_008722963.1 CDS P423_14840 NC_022648.1 3020759 3022273 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3020759..3022273) Escherichia coli JJ1886 17431787 YP_008722964.1 CDS P423_14845 NC_022648.1 3022460 3023899 D detoxifies nitric oxide using NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitric oxide reductase 3022460..3023899 Escherichia coli JJ1886 17431788 YP_008722965.1 CDS P423_14850 NC_022648.1 3023896 3025029 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:flavorubredoxin oxidoreductase 3023896..3025029 Escherichia coli JJ1886 17431789 YP_008722966.1 CDS P423_14855 NC_022648.1 3025251 3027551 R carbamoyltransferase; involved in the formation of the cyanate group of hydrogenase; catalyzes the formation of carbamoyladenylate from carbamoylphosphate and then transfers the carbamoyl group to HypE; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate phosphatase complement(3025251..3027551) Escherichia coli JJ1886 17431790 YP_008722967.1 CDS P423_14860 NC_022648.1 3027656 3028183 R involved in electron transport from formate to hydrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-H ferredoxin subunit complement(3027656..3028183) Escherichia coli JJ1886 17431791 YP_008722968.1 CDS P423_14865 NC_022648.1 3028291 3028494 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3028291..3028494 Escherichia coli JJ1886 17431792 YP_008722969.1 CDS P423_14870 NC_022648.1 3028611 3029048 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3028611..3029048 Escherichia coli JJ1886 17431793 YP_008722970.1 CDS P423_14875 NC_022648.1 3029140 3029559 R Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator complement(3029140..3029559) Escherichia coli JJ1886 17431794 YP_008722971.1 CDS P423_14880 NC_022648.1 3029585 3029752 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3029585..3029752) Escherichia coli JJ1886 17431795 YP_008722972.1 CDS hycI NC_022648.1 3029795 3030262 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 maturation protease complement(3029795..3030262) Escherichia coli JJ1886 17431796 YP_008722973.1 CDS P423_14890 NC_022648.1 3030255 3030665 R required for the maturation of the formate hydrogenlyase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase maturation protein HycH complement(3030255..3030665) Escherichia coli JJ1886 17431797 YP_008722974.1 CDS P423_14895 NC_022648.1 3030662 3031429 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 7 complement(3030662..3031429) Escherichia coli JJ1886 17431798 YP_008722975.1 CDS P423_14900 NC_022648.1 3031429 3031971 R electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase complex iron-sulfur subunit complement(3031429..3031971) Escherichia coli JJ1886 17431799 YP_008722976.1 CDS hycE NC_022648.1 3031981 3033690 R formate hydrogenlyase subunit 5; HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 large subunit complement(3031981..3033690) Escherichia coli JJ1886 17431800 YP_008722977.1 CDS hycD NC_022648.1 3033708 3034631 R formate hydrogenlyase subunit 4; HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 membrane subunit complement(3033708..3034631) Escherichia coli JJ1886 17431801 YP_008722978.1 CDS P423_14915 NC_022648.1 3034634 3036460 R catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 3 complement(3034634..3036460) Escherichia coli JJ1886 17431802 YP_008722979.1 CDS P423_14920 NC_022648.1 3036457 3037068 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 2 complement(3036457..3037068) Escherichia coli JJ1886 17431803 YP_008722980.1 CDS P423_14925 NC_022648.1 3037193 3037654 R regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase regulatory protein HycA complement(3037193..3037654) Escherichia coli JJ1886 17431804 YP_008722981.1 CDS hypA NC_022648.1 3037854 3038216 D plays a role in hydrogenase nickel cofactor insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein 3037854..3038216 Escherichia coli JJ1886 17431805 YP_008722982.1 CDS P423_14935 NC_022648.1 3038220 3039092 D GTP hydrolase involved in nickel liganding into hydrogenases; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein HypB 3038220..3039092 Escherichia coli JJ1886 17431806 YP_008722983.1 CDS P423_14940 NC_022648.1 3039083 3039355 D HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase assembly chaperone 3039083..3039355 Escherichia coli JJ1886 17431807 YP_008722984.1 CDS P423_14945 NC_022648.1 3039355 3040476 D necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase formation protein HypD 3039355..3040476 Escherichia coli JJ1886 17431808 YP_008722985.1 CDS P423_14950 NC_022648.1 3040473 3041483 D hydrogenase isoenzymes formation protein; involved in the formation of the cyanate group of the large subunit of the hydrogenase; catalyzes the formation of thiocyanate from thiocarbamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl dehydratase 3040473..3041483 Escherichia coli JJ1886 17431809 YP_008722986.1 CDS P423_14955 NC_022648.1 3041557 3043635 D regulates the expression of formate dehydrogenase H and hydrogenase-3 structural genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3041557..3043635 Escherichia coli JJ1886 17431810 YP_008722987.1 CDS P423_14960 NC_022648.1 3043680 3044108 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter 3043680..3044108 Escherichia coli JJ1886 17431811 YP_008722988.1 CDS P423_14965 NC_022648.1 3044147 3044491 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3044147..3044491) Escherichia coli JJ1886 17431812 YP_008722989.1 CDS P423_14970 NC_022648.1 3044546 3044701 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3044546..3044701) Escherichia coli JJ1886 17431813 YP_008722990.1 CDS P423_14975 NC_022648.1 3044777 3047338 D This protein performs the mismatch recognition step during the DNA repair process; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein MutS 3044777..3047338 Escherichia coli JJ1886 17431814 YP_008722991.1 CDS P423_14980 NC_022648.1 3047444 3048100 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein phosphatase 3047444..3048100 Escherichia coli JJ1886 17431815 YP_008722992.1 CDS P423_14985 NC_022648.1 3048151 3048918 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(3048151..3048918) Escherichia coli JJ1886 17431816 YP_008722993.1 CDS P423_14990 NC_022648.1 3049114 3050022 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3049114..3050022 Escherichia coli JJ1886 17431817 YP_008722994.1 CDS P423_14995 NC_022648.1 3050019 3051281 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3050019..3051281 Escherichia coli JJ1886 17431818 YP_008722995.1 CDS P423_15000 NC_022648.1 3051278 3051916 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aldolase 3051278..3051916 Escherichia coli JJ1886 17431819 YP_008722996.1 CDS P423_15005 NC_022648.1 3051921 3052697 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxypyruvate isomerase 3051921..3052697 Escherichia coli JJ1886 17431820 YP_008722997.1 CDS P423_15010 NC_022648.1 3052786 3054150 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3052786..3054150 Escherichia coli JJ1886 17431821 YP_008722998.1 CDS P423_15015 NC_022648.1 3054293 3055159 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lactamase complement(3054293..3055159) Escherichia coli JJ1886 17431822 YP_008722999.1 CDS P423_15020 NC_022648.1 3055561 3056112 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NADPH-dependent FMN reductase 3055561..3056112 Escherichia coli JJ1886 17431823 YP_008723000.1 CDS P423_15025 NC_022648.1 3056283 3057116 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3056283..3057116) Escherichia coli JJ1886 17431824 YP_008723001.1 CDS P423_15030 NC_022648.1 3057135 3057275 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA polymerase sigma factor complement(3057135..3057275) Escherichia coli JJ1886 17431825 YP_008723002.1 CDS nlpD NC_022648.1 3057338 3058477 R outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein NlpD complement(3057338..3058477) Escherichia coli JJ1886 17431826 YP_008723003.1 CDS pcm NC_022648.1 3058617 3059243 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-L-isoaspartate O-methyltransferase complement(3058617..3059243) Escherichia coli JJ1886 17431827 YP_008723004.1 CDS surE NC_022648.1 3059237 3059998 R broad specificity 5'(3')-nucleotidase and polyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.; stationary phase survival protein SurE complement(3059237..3059998) Escherichia coli JJ1886 17431828 YP_008723005.1 CDS truD NC_022648.1 3059979 3061028 R catalyzes the modification of U13 in tRNA(Glu); Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase D complement(3059979..3061028) Escherichia coli JJ1886 17431829 YP_008723006.1 CDS ispF NC_022648.1 3061025 3061504 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3061025..3061504) Escherichia coli JJ1886 17431830 YP_008723007.1 CDS P423_15060 NC_022648.1 3061504 3062214 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3061504..3062214) Escherichia coli JJ1886 17431831 YP_008723008.1 CDS ftsB NC_022648.1 3062233 3062544 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsB complement(3062233..3062544) Escherichia coli JJ1886 17431832 YP_008723009.1 CDS P423_15070 NC_022648.1 3062737 3063060 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3062737..3063060) Escherichia coli JJ1886 17431833 YP_008723010.1 CDS P423_15075 NC_022648.1 3063109 3063714 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylylsulfate kinase complement(3063109..3063714) Escherichia coli JJ1886 17431834 YP_008723011.1 CDS cysN NC_022648.1 3063714 3065141 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate adenylyltransferase subunit 1 complement(3063714..3065141) Escherichia coli JJ1886 17431835 YP_008723012.1 CDS P423_15085 NC_022648.1 3065143 3066051 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate adenylyltransferase subunit 2 complement(3065143..3066051) Escherichia coli JJ1886 17431836 YP_008723013.1 CDS P423_15090 NC_022648.1 3066303 3067340 D catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; Derived by automated computational analysis using gene prediction method: Protein Homology.; alkaline phosphatase isozyme conversion aminopeptidase 3066303..3067340 Escherichia coli JJ1886 17431837 YP_008723014.1 CDS P423_15095 NC_022648.1 3067466 3067618 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3067466..3067618) Escherichia coli JJ1886 17431838 YP_008723015.1 CDS P423_15100 NC_022648.1 3067884 3068618 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoadenosine phosphosulfate reductase complement(3067884..3068618) Escherichia coli JJ1886 17431839 YP_008723016.1 CDS P423_15105 NC_022648.1 3068692 3070404 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite reductase subunit beta complement(3068692..3070404) Escherichia coli JJ1886 17431840 YP_008723017.1 CDS cysJ NC_022648.1 3070404 3072203 R catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite reductase subunit alpha complement(3070404..3072203) Escherichia coli JJ1886 17431841 YP_008723018.1 CDS P423_15115 NC_022648.1 3072519 3072884 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-carboxy-5,6,7,8-tetrahydropterin synthase 3072519..3072884 Escherichia coli JJ1886 17431842 YP_008723019.1 CDS P423_15120 NC_022648.1 3072962 3074233 D Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase 3072962..3074233 Escherichia coli JJ1886 17431843 YP_008723020.1 CDS P423_15125 NC_022648.1 3074224 3074484 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin 3074224..3074484 Escherichia coli JJ1886 17431844 YP_008723021.1 CDS P423_15130 NC_022648.1 3074501 3075076 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3074501..3075076 Escherichia coli JJ1886 17431845 YP_008723022.1 CDS P423_15135 NC_022648.1 3075224 3076084 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein complement(3075224..3076084) Escherichia coli JJ1886 17431846 YP_008723023.1 CDS P423_15140 NC_022648.1 3076081 3076860 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit YgcR complement(3076081..3076860) Escherichia coli JJ1886 17431847 YP_008723024.1 CDS P423_15145 NC_022648.1 3076838 3078175 R Derived by automated computational analysis using gene prediction method: Protein Homology.; major facilitator transporter complement(3076838..3078175) Escherichia coli JJ1886 17431848 YP_008723025.1 CDS P423_15150 NC_022648.1 3078269 3079723 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-linked oxidoreductase complement(3078269..3079723) Escherichia coli JJ1886 17431849 YP_008723026.1 CDS P423_15155 NC_022648.1 3079793 3080578 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(3079793..3080578) Escherichia coli JJ1886 17431850 YP_008723027.1 CDS P423_15160 NC_022648.1 3080897 3082174 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3080897..3082174 Escherichia coli JJ1886 17431851 YP_008723028.1 CDS P423_15165 NC_022648.1 3082201 3083679 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase 3082201..3083679 Escherichia coli JJ1886 17431852 YP_008723029.1 CDS P423_15170 NC_022648.1 3083844 3084764 D phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoimidazole riboside kinase 3083844..3084764 Escherichia coli JJ1886 17431853 YP_008723030.1 CDS P423_15175 NC_022648.1 3084932 3086449 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sucrose porin 3084932..3086449 Escherichia coli JJ1886 17431854 YP_008723031.1 CDS P423_15180 NC_022648.1 3086510 3087880 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS sugar transporter 3086510..3087880 Escherichia coli JJ1886 17431855 YP_008723032.1 CDS P423_15185 NC_022648.1 3087886 3089289 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl hydrolase family 32 3087886..3089289 Escherichia coli JJ1886 17431856 YP_008723033.1 CDS P423_15190 NC_022648.1 3089315 3090322 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sucrose operon repressor 3089315..3090322 Escherichia coli JJ1886 17431857 YP_008723034.1 CDS P423_15195 NC_022648.1 3090407 3091078 R Derived by automated computational analysis using gene prediction method: Protein Homology.; coenzyme PQQ biosynthesis protein complement(3090407..3091078) Escherichia coli JJ1886 17431858 YP_008723035.1 CDS P423_15200 NC_022648.1 3091251 3091358 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3091251..3091358 Escherichia coli JJ1886 17431859 YP_008723036.1 CDS P423_15205 NC_022648.1 3091372 3092244 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3091372..3092244 Escherichia coli JJ1886 17431860 YP_008723037.1 CDS eno NC_022648.1 3092304 3093602 R catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; enolase complement(3092304..3093602) Escherichia coli JJ1886 17431861 YP_008723038.1 CDS pyrG NC_022648.1 3093690 3095327 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; Derived by automated computational analysis using gene prediction method: Protein Homology.; CTP synthetase complement(3093690..3095327) Escherichia coli JJ1886 17431862 YP_008723039.1 CDS mazG NC_022648.1 3095555 3096346 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate pyrophosphohydrolase complement(3095555..3096346) Escherichia coli JJ1886 17431863 YP_008723040.1 CDS relA NC_022648.1 3096442 3098676 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP pyrophosphokinase complement(3096442..3098676) Escherichia coli JJ1886 17431864 YP_008723041.1 CDS rumA NC_022648.1 3098724 3100025 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(3098724..3100025) Escherichia coli JJ1886 17431865 YP_008723042.1 CDS P423_15235 NC_022648.1 3100082 3102838 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 3100082..3102838 Escherichia coli JJ1886 17431866 YP_008723043.1 CDS gudD NC_022648.1 3103069 3104409 R catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate dehydratase complement(3103069..3104409) Escherichia coli JJ1886 17431867 YP_008723044.1 CDS gudD NC_022648.1 3104430 3105770 R catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate dehydratase complement(3104430..3105770) Escherichia coli JJ1886 17431868 YP_008723045.1 CDS P423_15250 NC_022648.1 3105772 3107124 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate transporter complement(3105772..3107124) Escherichia coli JJ1886 17431869 YP_008723046.1 CDS P423_15255 NC_022648.1 3107558 3108007 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin complement(3107558..3108007) Escherichia coli JJ1886 17431870 YP_008723047.1 CDS P423_15260 NC_022648.1 3108025 3108807 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase C complement(3108025..3108807) Escherichia coli JJ1886 17431871 YP_008723048.1 CDS P423_15265 NC_022648.1 3108807 3109136 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3108807..3109136) Escherichia coli JJ1886 17431872 YP_008723049.1 CDS P423_15270 NC_022648.1 3109383 3109511 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3109383..3109511) Escherichia coli JJ1886 17431873 YP_008723050.1 CDS P423_15275 NC_022648.1 3109758 3110303 R SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; Derived by automated computational analysis using gene prediction method: Protein Homology.; SecY interacting protein Syd complement(3109758..3110303) Escherichia coli JJ1886 17431874 YP_008723051.1 CDS queF NC_022648.1 3110371 3111219 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 7-cyano-7-deazaguanine reductase 3110371..3111219 Escherichia coli JJ1886 17431875 YP_008723052.1 CDS P423_15285 NC_022648.1 3111331 3112695 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LOG family protein ygdH 3111331..3112695 Escherichia coli JJ1886 17431876 YP_008723053.1 CDS P423_15290 NC_022648.1 3113252 3114541 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter 3113252..3114541 Escherichia coli JJ1886 17431877 YP_008723054.1 CDS P423_15295 NC_022648.1 3114599 3115966 D catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase 3114599..3115966 Escherichia coli JJ1886 17431878 YP_008723055.1 CDS P423_15300 NC_022648.1 3115988 3116833 D similar to flap endonuclease; FEN family; protein from E. coli does not have exonuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease 3115988..3116833 Escherichia coli JJ1886 17431879 YP_008723056.1 CDS P423_15305 NC_022648.1 3116938 3118086 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-1,2-propanediol oxidoreductase complement(3116938..3118086) Escherichia coli JJ1886 17431880 YP_008723057.1 CDS P423_15310 NC_022648.1 3118114 3118761 R catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fuculose phosphate aldolase complement(3118114..3118761) Escherichia coli JJ1886 17431881 YP_008723058.1 CDS P423_15315 NC_022648.1 3119308 3120624 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-fucose transporter 3119308..3120624 Escherichia coli JJ1886 17431882 YP_008723059.1 CDS fucI NC_022648.1 3120657 3122432 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; Derived by automated computational analysis using gene prediction method: Protein Homology.; fucose isomerase 3120657..3122432 Escherichia coli JJ1886 17431883 YP_008723060.1 CDS P423_15325 NC_022648.1 3122511 3123959 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-fuculokinase 3122511..3123959 Escherichia coli JJ1886 17431884 YP_008723061.1 CDS fucU NC_022648.1 3123961 3124383 D catalyzes the interconversion of alpha-L-fucose to beta-L-fucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-fucose mutarotase 3123961..3124383 Escherichia coli JJ1886 17431885 YP_008723062.1 CDS P423_15335 NC_022648.1 3124441 3125172 D regulates expression of genes involved in L-fucose utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3124441..3125172 Escherichia coli JJ1886 17431886 YP_008723063.1 CDS P423_15340 NC_022648.1 3125216 3126316 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(3125216..3126316) Escherichia coli JJ1886 17431887 YP_008723064.1 CDS P423_15345 NC_022648.1 3126309 3126704 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3126309..3126704) Escherichia coli JJ1886 17431888 YP_008723065.1 CDS P423_15350 NC_022648.1 3126723 3127640 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3126723..3127640) Escherichia coli JJ1886 17431889 YP_008723066.1 CDS P423_15355 NC_022648.1 3127991 3128218 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3127991..3128218) Escherichia coli JJ1886 17431890 YP_008723067.1 CDS P423_15360 NC_022648.1 3128410 3129615 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine sulfinate desulfinase 3128410..3129615 Escherichia coli JJ1886 17431891 YP_008723068.1 CDS P423_15365 NC_022648.1 3129615 3130058 D binds and activates CsdA; Fe-S protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; CsdA-binding activator 3129615..3130058 Escherichia coli JJ1886 17431892 YP_008723069.1 CDS P423_15370 NC_022648.1 3130109 3130915 R accepts sulfur from CsdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur acceptor protein CsdL complement(3130109..3130915) Escherichia coli JJ1886 17431893 YP_008723070.1 CDS mltA NC_022648.1 3130992 3132089 R membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein transglycosylase A complement(3130992..3132089) Escherichia coli JJ1886 17431894 YP_008723071.1 CDS P423_15395 NC_022648.1 3133230 3133730 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3133230..3133730 Escherichia coli JJ1886 17431898 YP_008723072.1 CDS P423_15400 NC_022648.1 3133789 3135327 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; EvpB/family type VI secretion protein 3133789..3135327 Escherichia coli JJ1886 17431899 YP_008723073.1 CDS P423_15405 NC_022648.1 3135345 3136682 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3135345..3136682 Escherichia coli JJ1886 17431900 YP_008723074.1 CDS P423_15410 NC_022648.1 3136679 3137344 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type VI secretion protein ImpK 3136679..3137344 Escherichia coli JJ1886 17431901 YP_008723075.1 CDS P423_15415 NC_022648.1 3137357 3139009 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; OmpA family protein 3137357..3139009 Escherichia coli JJ1886 17431902 YP_008723076.1 CDS P423_15420 NC_022648.1 3139067 3139558 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Hcp family type VI secretion system effector 3139067..3139558 Escherichia coli JJ1886 17431903 YP_008723077.1 CDS P423_15425 NC_022648.1 3139749 3142385 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protein disaggregation chaperone 3139749..3142385 Escherichia coli JJ1886 17431904 YP_008723078.1 CDS P423_15430 NC_022648.1 3142397 3144721 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 3142397..3144721 Escherichia coli JJ1886 17431905 YP_008723079.1 CDS P423_15435 NC_022648.1 3144733 3147096 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3144733..3147096 Escherichia coli JJ1886 17431906 YP_008723080.1 CDS P423_15440 NC_022648.1 3147093 3147950 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3147093..3147950 Escherichia coli JJ1886 17431907 YP_008723081.1 CDS P423_15445 NC_022648.1 3148414 3150792 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 3148414..3150792 Escherichia coli JJ1886 17431908 YP_008723082.1 CDS P423_15450 NC_022648.1 3150795 3151616 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3150795..3151616 Escherichia coli JJ1886 17431909 YP_008723083.1 CDS P423_15455 NC_022648.1 3151660 3152187 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3151660..3152187 Escherichia coli JJ1886 17431910 YP_008723084.1 CDS P423_15460 NC_022648.1 3152184 3154052 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3152184..3154052 Escherichia coli JJ1886 17431911 YP_008723085.1 CDS P423_15465 NC_022648.1 3154158 3156671 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 3154158..3156671 Escherichia coli JJ1886 17431912 YP_008723086.1 CDS P423_15470 NC_022648.1 3156693 3157295 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3156693..3157295 Escherichia coli JJ1886 17431913 YP_008723087.1 CDS P423_15475 NC_022648.1 3157398 3157847 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3157398..3157847 Escherichia coli JJ1886 17431914 YP_008723088.1 CDS P423_15480 NC_022648.1 3157925 3159139 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3157925..3159139 Escherichia coli JJ1886 17431915 YP_008723089.1 CDS P423_15485 NC_022648.1 3159139 3160818 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3159139..3160818 Escherichia coli JJ1886 17431916 YP_008723090.1 CDS P423_15490 NC_022648.1 3161184 3162500 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3161184..3162500 Escherichia coli JJ1886 17431917 YP_008723091.1 CDS P423_15495 NC_022648.1 3162515 3163261 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATP-binding protein 3162515..3163261 Escherichia coli JJ1886 17431918 YP_008723092.1 CDS P423_15500 NC_022648.1 3163312 3165114 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3163312..3165114 Escherichia coli JJ1886 17431919 YP_008723093.1 CDS P423_15505 NC_022648.1 3165107 3166717 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3165107..3166717 Escherichia coli JJ1886 17431920 YP_008723094.1 CDS P423_15510 NC_022648.1 3166717 3168141 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; paar 3166717..3168141 Escherichia coli JJ1886 17431921 YP_008723095.1 CDS P423_15515 NC_022648.1 3168134 3168556 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3168134..3168556 Escherichia coli JJ1886 17431922 YP_008723096.1 CDS P423_15520 NC_022648.1 3169116 3170876 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type VI secretion protein ImpG 3169116..3170876 Escherichia coli JJ1886 17431923 YP_008723097.1 CDS P423_15525 NC_022648.1 3170840 3171919 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3170840..3171919 Escherichia coli JJ1886 17431924 YP_008723098.1 CDS P423_15530 NC_022648.1 3171900 3172244 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3171900..3172244 Escherichia coli JJ1886 17431925 YP_008723099.1 CDS P423_15535 NC_022648.1 3173891 3174241 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase complement(3173891..3174241) Escherichia coli JJ1886 17433813 YP_008723100.1 CDS P423_15540 NC_022648.1 3174238 3174663 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(3174238..3174663) Escherichia coli JJ1886 17431927 YP_008723101.1 CDS P423_15545 NC_022648.1 3174799 3174975 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3174799..3174975 Escherichia coli JJ1886 17431928 YP_008723102.1 CDS P423_15550 NC_022648.1 3174979 3175407 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3174979..3175407 Escherichia coli JJ1886 17431929 YP_008723103.1 CDS P423_15555 NC_022648.1 3175407 3176783 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; impA family protein 3175407..3176783 Escherichia coli JJ1886 17431930 YP_008723104.1 CDS P423_15560 NC_022648.1 3177083 3178030 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphoglycerate dehydrogenase complement(3177083..3178030) Escherichia coli JJ1886 17431931 YP_008723105.1 CDS P423_15565 NC_022648.1 3178102 3178698 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; isomerase complement(3178102..3178698) Escherichia coli JJ1886 17431932 YP_008723106.1 CDS P423_15570 NC_022648.1 3178701 3179876 R catalyzes the formation of homocysteine and pyruvate from cystathionine; also acts a a negative regulator for the mal regulon but interacting with the transcriptional activator MalT; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aminotransferase complement(3178701..3179876) Escherichia coli JJ1886 17431933 YP_008723107.1 CDS P423_15575 NC_022648.1 3179876 3181456 R phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS maltose transporter subunit IICB complement(3179876..3181456) Escherichia coli JJ1886 17431934 YP_008723108.1 CDS P423_15580 NC_022648.1 3181488 3182369 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3181488..3182369) Escherichia coli JJ1886 17431935 YP_008723109.1 CDS amiC NC_022648.1 3182570 3183823 R hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase complement(3182570..3183823) Escherichia coli JJ1886 17431936 YP_008723110.1 CDS P423_15590 NC_022648.1 3184055 3185386 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylglutamate synthase 3184055..3185386 Escherichia coli JJ1886 17431937 YP_008723111.1 CDS recD NC_022648.1 3185468 3187294 R helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease V subunit alpha complement(3185468..3187294) Escherichia coli JJ1886 17431938 YP_008723112.1 CDS recB NC_022648.1 3187294 3190836 R helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease V subunit beta complement(3187294..3190836) Escherichia coli JJ1886 17431939 YP_008723113.1 CDS P423_15605 NC_022648.1 3190829 3193717 R degrades small peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease complement(3190829..3193717) Escherichia coli JJ1886 17431940 YP_008723114.1 CDS recC NC_022648.1 3193893 3197261 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease V subunit gamma complement(3193893..3197261) Escherichia coli JJ1886 17431941 YP_008723115.1 CDS P423_15615 NC_022648.1 3197274 3197597 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3197274..3197597) Escherichia coli JJ1886 17431942 YP_008723116.1 CDS P423_15620 NC_022648.1 3197582 3197989 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3197582..3197989) Escherichia coli JJ1886 17431943 YP_008723117.1 CDS P423_15625 NC_022648.1 3197986 3198549 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3197986..3198549) Escherichia coli JJ1886 17431944 YP_008723118.1 CDS P423_15630 NC_022648.1 3198540 3199010 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3198540..3199010) Escherichia coli JJ1886 17431945 YP_008723119.1 CDS P423_15635 NC_022648.1 3199195 3199989 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidylate synthase complement(3199195..3199989) Escherichia coli JJ1886 17431946 YP_008723120.1 CDS P423_15640 NC_022648.1 3199996 3200871 R Derived by automated computational analysis using gene prediction method: Protein Homology.; prolipoprotein diacylglyceryl transferase complement(3199996..3200871) Escherichia coli JJ1886 17431947 YP_008723121.1 CDS P423_15645 NC_022648.1 3201022 3203268 R member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate-protein phosphotransferase complement(3201022..3203268) Escherichia coli JJ1886 17431948 YP_008723122.1 CDS P423_15650 NC_022648.1 3203281 3203811 R hydrolyzes diadenosine polyphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA pyrophosphohydrolase complement(3203281..3203811) Escherichia coli JJ1886 17431949 YP_008723123.1 CDS P423_15655 NC_022648.1 3204496 3205185 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein 3204496..3205185 Escherichia coli JJ1886 17431950 YP_008723124.1 CDS P423_15660 NC_022648.1 3205254 3205967 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3205254..3205967 Escherichia coli JJ1886 17431951 YP_008723125.1 CDS P423_15665 NC_022648.1 3206105 3206323 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3206105..3206323 Escherichia coli JJ1886 17431952 YP_008723126.1 CDS tas NC_022648.1 3206431 3207471 D complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldo-keto reductase 3206431..3207471 Escherichia coli JJ1886 17431953 YP_008723127.1 CDS P423_15675 NC_022648.1 3207503 3208696 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipid transporter LplT complement(3207503..3208696) Escherichia coli JJ1886 17431954 YP_008723128.1 CDS P423_15680 NC_022648.1 3208689 3210848 R Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-acyl-glycerophospho-ethanolamine acyltransferase complement(3208689..3210848) Escherichia coli JJ1886 17431955 YP_008723129.1 CDS P423_15685 NC_022648.1 3211434 3212465 D controls transcription of galETKM; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3211434..3212465 Escherichia coli JJ1886 17431956 YP_008723130.1 CDS P423_15690 NC_022648.1 3212472 3213734 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate decarboxylase complement(3212472..3213734) Escherichia coli JJ1886 17431957 YP_008723131.1 CDS P423_15695 NC_022648.1 3213856 3214791 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3213856..3214791 Escherichia coli JJ1886 17431958 YP_008723132.1 CDS P423_15700 NC_022648.1 3214778 3215470 R Derived by automated computational analysis using gene prediction method: Protein Homology.; racemase complement(3214778..3215470) Escherichia coli JJ1886 17431959 YP_008723133.1 CDS P423_15705 NC_022648.1 3215599 3217017 R Derived by automated computational analysis using gene prediction method: Protein Homology.; D-galactose transporter complement(3215599..3217017) Escherichia coli JJ1886 17431960 YP_008723134.1 CDS P423_15710 NC_022648.1 3217332 3218093 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-deoxy-D-gluconate 3-dehydrogenase complement(3217332..3218093) Escherichia coli JJ1886 17431961 YP_008723135.1 CDS P423_15715 NC_022648.1 3218123 3218959 R 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-keto-4-deoxyuronate isomerase complement(3218123..3218959) Escherichia coli JJ1886 17431962 YP_008723136.1 CDS P423_15720 NC_022648.1 3219246 3220427 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA acetyltransferase complement(3219246..3220427) Escherichia coli JJ1886 17431963 YP_008723137.1 CDS P423_15725 NC_022648.1 3220682 3221911 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3220682..3221911 Escherichia coli JJ1886 17431964 YP_008723138.1 CDS P423_15735 NC_022648.1 3222380 3223135 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3222380..3223135) Escherichia coli JJ1886 17431966 YP_008723139.1 CDS P423_15740 NC_022648.1 3223549 3225846 D molybdenum cofactor-binding protein; participates in purine salvage; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase subunit A 3223549..3225846 Escherichia coli JJ1886 17431967 YP_008723140.1 CDS P423_15745 NC_022648.1 3225857 3226735 D FAD-binding subunit; with XdhA and XdhC participates in purine salvage; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase subunit B 3225857..3226735 Escherichia coli JJ1886 17431968 YP_008723141.1 CDS P423_15750 NC_022648.1 3226732 3227211 D iron-sulfur-binding subunit; with XdhA and XdhB participates in purine salvage; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase subunit C 3226732..3227211 Escherichia coli JJ1886 17431969 YP_008723142.1 CDS P423_15755 NC_022648.1 3227250 3229028 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Fis family transcriptional regulator complement(3227250..3229028) Escherichia coli JJ1886 17431970 YP_008723143.1 CDS P423_15760 NC_022648.1 3229504 3230694 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine carbamoyltransferase 3229504..3230694 Escherichia coli JJ1886 17431971 YP_008723144.1 CDS P423_15765 NC_022648.1 3230752 3231948 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopropionate ammonia-lyase 3230752..3231948 Escherichia coli JJ1886 17431972 YP_008723145.1 CDS P423_15770 NC_022648.1 3232006 3233217 D Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 3232006..3233217 Escherichia coli JJ1886 17431973 YP_008723146.1 CDS P423_15775 NC_022648.1 3233270 3234655 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylhydantoinase 3233270..3234655 Escherichia coli JJ1886 17431974 YP_008723147.1 CDS P423_15780 NC_022648.1 3234703 3235635 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamate kinase 3234703..3235635 Escherichia coli JJ1886 17431975 YP_008723148.1 CDS P423_15785 NC_022648.1 3235676 3237301 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3235676..3237301) Escherichia coli JJ1886 17431976 YP_008723149.1 CDS P423_15790 NC_022648.1 3237349 3238119 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3237349..3238119) Escherichia coli JJ1886 17431977 YP_008723150.1 CDS P423_15795 NC_022648.1 3238223 3238801 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Molybdenum cofactor cytidylyltransferase 3238223..3238801 Escherichia coli JJ1886 17431978 YP_008723151.1 CDS P423_15800 NC_022648.1 3239123 3242221 D with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; selenate reductase 3239123..3242221 Escherichia coli JJ1886 17431979 YP_008723152.1 CDS P423_15805 NC_022648.1 3242224 3243552 D in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.; chlorohydrolase/aminohydrolase 3242224..3243552 Escherichia coli JJ1886 17431980 YP_008723153.1 CDS P423_15810 NC_022648.1 3243603 3244382 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3243603..3244382 Escherichia coli JJ1886 17431981 YP_008723154.1 CDS P423_15815 NC_022648.1 3244379 3247249 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypoxanthine oxidase 3244379..3247249 Escherichia coli JJ1886 17431982 YP_008723155.1 CDS P423_15820 NC_022648.1 3247414 3248814 D Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine permease 3247414..3248814 Escherichia coli JJ1886 17431983 YP_008723156.1 CDS P423_15825 NC_022648.1 3248832 3250148 D Catalyzes the deamination of guanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanine deaminase 3248832..3250148 Escherichia coli JJ1886 17431984 YP_008723157.1 CDS P423_15830 NC_022648.1 3250184 3251551 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permase 3250184..3251551 Escherichia coli JJ1886 17431985 YP_008723158.1 CDS P423_15835 NC_022648.1 3251587 3252075 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter complement(3251587..3252075) Escherichia coli JJ1886 17431986 YP_008723159.1 CDS P423_15840 NC_022648.1 3252075 3253994 R unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase Fe-S binding subunit complement(3252075..3253994) Escherichia coli JJ1886 17431987 YP_008723160.1 CDS P423_15845 NC_022648.1 3254430 3255878 D Derived by automated computational analysis using gene prediction method: Protein Homology.; purine permease 3254430..3255878 Escherichia coli JJ1886 17431988 YP_008723161.1 CDS P423_15850 NC_022648.1 3255868 3256005 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3255868..3256005 Escherichia coli JJ1886 17431989 YP_008723162.1 CDS P423_15855 NC_022648.1 3256128 3256676 D catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; isopentenyl-diphosphate delta-isomerase 3256128..3256676 Escherichia coli JJ1886 17431990 YP_008723163.1 CDS lysS NC_022648.1 3256719 3258236 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysyl-tRNA synthetase complement(3256719..3258236) Escherichia coli JJ1886 17431991 YP_008723164.1 CDS prfA NC_022648.1 3258246 3259127 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 1 complement(3258246..3259127) Escherichia coli JJ1886 17431992 YP_008723165.1 CDS P423_15870 NC_022648.1 3259128 3259283 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3259128..3259283 Escherichia coli JJ1886 17431993 YP_008723166.1 CDS P423_15875 NC_022648.1 3259435 3261168 R 5'-3' single-stranded-DNA-specific exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.; ssDNA exonuclease RecJ complement(3259435..3261168) Escherichia coli JJ1886 17431994 YP_008723167.1 CDS P423_15880 NC_022648.1 3261174 3261884 R DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-disulfide isomerase complement(3261174..3261884) Escherichia coli JJ1886 17431995 YP_008723168.1 CDS xerD NC_022648.1 3261909 3262805 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase XerD complement(3261909..3262805) Escherichia coli JJ1886 17431996 YP_008723169.1 CDS P423_15890 NC_022648.1 3262917 3263438 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin 3262917..3263438 Escherichia coli JJ1886 17431997 YP_008723170.1 CDS P423_15895 NC_022648.1 3263478 3263885 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3263478..3263885) Escherichia coli JJ1886 17431998 YP_008723171.1 CDS P423_15900 NC_022648.1 3263866 3264132 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3263866..3264132) Escherichia coli JJ1886 17431999 YP_008723172.1 CDS P423_15905 NC_022648.1 3264125 3264301 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3264125..3264301 Escherichia coli JJ1886 17432000 YP_008723173.1 CDS ygfZ NC_022648.1 3264375 3265355 D physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulato; Hda supressor; Derived by automated computational analysis using gene prediction method: Protein Homology.; global regulator 3264375..3265355 Escherichia coli JJ1886 17432001 YP_008723174.1 CDS P423_15915 NC_022648.1 3265432 3266091 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hemolysin complement(3265432..3266091) Escherichia coli JJ1886 17432002 YP_008723175.1 CDS P423_15920 NC_022648.1 3266255 3266566 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3266255..3266566) Escherichia coli JJ1886 17432003 YP_008723176.1 CDS P423_15925 NC_022648.1 3266605 3268044 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phospho-beta-glucosidase 3266605..3268044 Escherichia coli JJ1886 17432004 YP_008723177.1 CDS P423_15930 NC_022648.1 3268210 3271083 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine dehydrogenase complement(3268210..3271083) Escherichia coli JJ1886 17432005 YP_008723178.1 CDS P423_15935 NC_022648.1 3271202 3271591 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system protein H complement(3271202..3271591) Escherichia coli JJ1886 17432006 YP_008723179.1 CDS gcvT NC_022648.1 3271615 3272709 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system aminomethyltransferase T complement(3271615..3272709) Escherichia coli JJ1886 17432007 YP_008723180.1 CDS P423_15945 NC_022648.1 3273157 3274359 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3273157..3274359) Escherichia coli JJ1886 17432008 YP_008723181.1 CDS P423_15950 NC_022648.1 3274382 3275560 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3274382..3275560) Escherichia coli JJ1886 17432009 YP_008723182.1 CDS P423_15955 NC_022648.1 3275557 3276882 R exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; Derived by automated computational analysis using gene prediction method: Protein Homology.; proline aminopeptidase P II complement(3275557..3276882) Escherichia coli JJ1886 17432010 YP_008723183.1 CDS P423_15960 NC_022648.1 3276908 3277486 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3276908..3277486) Escherichia coli JJ1886 17432011 YP_008723184.1 CDS P423_15965 NC_022648.1 3277654 3277983 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Z-ring-associated protein 3277654..3277983 Escherichia coli JJ1886 17432012 YP_008723185.1 CDS P423_15970 NC_022648.1 3278229 3278831 D ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-formyltetrahydrofolate cyclo-ligase 3278229..3278831 Escherichia coli JJ1886 17432013 YP_008723186.1 CDS P423_15975 NC_022648.1 3279220 3280452 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoglycerate dehydrogenase complement(3279220..3280452) Escherichia coli JJ1886 17432014 YP_008723187.1 CDS P423_15980 NC_022648.1 3280708 3281403 R catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose 5-phosphate isomerase complement(3280708..3281403) Escherichia coli JJ1886 17432015 YP_008723188.1 CDS P423_15985 NC_022648.1 3281423 3281653 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3281423..3281653) Escherichia coli JJ1886 17432016 YP_008723189.1 CDS P423_15990 NC_022648.1 3281794 3282687 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosome replication initiation inhibitor protein 3281794..3282687 Escherichia coli JJ1886 17432017 YP_008723190.1 CDS P423_15995 NC_022648.1 3282890 3283945 D MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; methylmalonyl-CoA mutase 3282890..3283945 Escherichia coli JJ1886 17432018 YP_008723191.1 CDS P423_16005 NC_022648.1 3285006 3285746 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative stress defense protein complement(3285006..3285746) Escherichia coli JJ1886 17432020 YP_008723192.1 CDS P423_16010 NC_022648.1 3285839 3286474 R Involved in the export of arginine; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine exporter protein complement(3285839..3286474) Escherichia coli JJ1886 17432021 YP_008723193.1 CDS P423_16015 NC_022648.1 3286613 3287473 R participates in the regulation of osmotic pressure changes within the cel; Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel MscS complement(3286613..3287473) Escherichia coli JJ1886 17432022 YP_008723194.1 CDS P423_16020 NC_022648.1 3287664 3288743 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(3287664..3288743) Escherichia coli JJ1886 17432023 YP_008723195.1 CDS P423_16025 NC_022648.1 3288957 3290120 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate kinase complement(3288957..3290120) Escherichia coli JJ1886 17432024 YP_008723196.1 CDS gapA NC_022648.1 3290170 3291189 R required for glycolysis; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glyceraldehyde-3-phosphate dehydrogenase complement(3290170..3291189) Escherichia coli JJ1886 17432025 YP_008723197.1 CDS P423_16035 NC_022648.1 3291561 3291992 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 3291561..3291992 Escherichia coli JJ1886 17432026 YP_008723198.1 CDS P423_16040 NC_022648.1 3292015 3292593 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3292015..3292593 Escherichia coli JJ1886 17432027 YP_008723199.1 CDS P423_16045 NC_022648.1 3292594 3293301 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt ABC transporter permease 3292594..3293301 Escherichia coli JJ1886 17432028 YP_008723200.1 CDS P423_16050 NC_022648.1 3293289 3293966 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt ABC transporter ATP-binding protein 3293289..3293966 Escherichia coli JJ1886 17432029 YP_008723201.1 CDS P423_16055 NC_022648.1 3293960 3294637 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein 3293960..3294637 Escherichia coli JJ1886 17432030 YP_008723202.1 CDS P423_16060 NC_022648.1 3294609 3295322 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate hydrolase complement(3294609..3295322) Escherichia coli JJ1886 17432031 YP_008723203.1 CDS P423_16065 NC_022648.1 3295319 3295828 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mannitol repressor complement(3295319..3295828) Escherichia coli JJ1886 17432032 YP_008723204.1 CDS P423_16070 NC_022648.1 3295850 3296815 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose 1,6-bisphosphatase complement(3295850..3296815) Escherichia coli JJ1886 17432033 YP_008723205.1 CDS P423_16075 NC_022648.1 3296812 3298089 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-sorbose 1-phosphate reductase complement(3296812..3298089) Escherichia coli JJ1886 17432034 YP_008723206.1 CDS P423_16080 NC_022648.1 3298104 3299492 R CmtA with CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannitol transporter subunit IIBC complement(3298104..3299492) Escherichia coli JJ1886 17432035 YP_008723207.1 CDS cmtB NC_022648.1 3299520 3299963 R TolM; with CmtA (IIBC), CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannitol transporter subunit IIA complement(3299520..3299963) Escherichia coli JJ1886 17432036 YP_008723208.1 CDS P423_16090 NC_022648.1 3300341 3301249 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; SPFH domain protein 3300341..3301249 Escherichia coli JJ1886 17432037 YP_008723209.1 CDS P423_16100 NC_022648.1 3301456 3303447 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase complement(3301456..3303447) Escherichia coli JJ1886 17432038 YP_008723210.1 CDS P423_16105 NC_022648.1 3303725 3304483 D Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloprotease 3303725..3304483 Escherichia coli JJ1886 17432039 YP_008723211.1 CDS P423_16110 NC_022648.1 3304913 3305833 R catalyzes the formation of putrescine from agmatine; Derived by automated computational analysis using gene prediction method: Protein Homology.; agmatinase complement(3304913..3305833) Escherichia coli JJ1886 17432040 YP_008723212.1 CDS P423_16115 NC_022648.1 3305969 3306700 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3305969..3306700) Escherichia coli JJ1886 17432041 YP_008723213.1 CDS P423_16120 NC_022648.1 3306846 3308822 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine decarboxylase complement(3306846..3308822) Escherichia coli JJ1886 17432042 YP_008723214.1 CDS P423_16125 NC_022648.1 3308831 3308977 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3308831..3308977) Escherichia coli JJ1886 17432043 YP_008723215.1 CDS P423_16130 NC_022648.1 3309310 3309561 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3309310..3309561) Escherichia coli JJ1886 17432044 YP_008723216.1 CDS P423_16135 NC_022648.1 3309617 3310771 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine synthetase 3309617..3310771 Escherichia coli JJ1886 17432045 YP_008723217.1 CDS P423_16140 NC_022648.1 3310848 3311048 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; S-adenosylmethionine synthetase 3310848..3311048 Escherichia coli JJ1886 17432046 YP_008723218.1 CDS P423_16145 NC_022648.1 3311207 3312601 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-galactose transporter 3311207..3312601 Escherichia coli JJ1886 17432047 YP_008723219.1 CDS P423_16150 NC_022648.1 3312678 3313175 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3312678..3313175 Escherichia coli JJ1886 17432048 YP_008723220.1 CDS P423_16155 NC_022648.1 3313270 3313977 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease 3313270..3313977 Escherichia coli JJ1886 17432049 YP_008723221.1 CDS P423_16160 NC_022648.1 3314057 3314788 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3314057..3314788 Escherichia coli JJ1886 17432050 YP_008723222.1 CDS P423_16165 NC_022648.1 3314801 3315751 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione synthetase 3314801..3315751 Escherichia coli JJ1886 17432051 YP_008723223.1 CDS P423_16170 NC_022648.1 3315860 3316423 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3315860..3316423 Escherichia coli JJ1886 17432052 YP_008723224.1 CDS P423_16175 NC_022648.1 3316423 3316839 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction resolvase 3316423..3316839 Escherichia coli JJ1886 17432053 YP_008723225.1 CDS P423_16180 NC_022648.1 3316954 3317934 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3316954..3317934) Escherichia coli JJ1886 17432054 YP_008723226.1 CDS P423_16185 NC_022648.1 3317952 3318656 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3317952..3318656 Escherichia coli JJ1886 17432055 YP_008723227.1 CDS P423_16190 NC_022648.1 3318674 3319240 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3318674..3319240 Escherichia coli JJ1886 17432056 YP_008723228.1 CDS P423_16195 NC_022648.1 3319237 3319527 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3319237..3319527 Escherichia coli JJ1886 17432057 YP_008723229.1 CDS P423_16200 NC_022648.1 3319535 3320128 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside-triphosphate diphosphatase 3319535..3320128 Escherichia coli JJ1886 17432058 YP_008723230.1 CDS P423_16205 NC_022648.1 3320121 3321257 D Derived by automated computational analysis using gene prediction method: Protein Homology.; HemN family oxidoreductase 3320121..3321257 Escherichia coli JJ1886 17432059 YP_008723231.1 CDS P423_16210 NC_022648.1 3321572 3322558 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; C4-dicarboxylate ABC transporter substrate-binding protein 3321572..3322558 Escherichia coli JJ1886 17432060 YP_008723232.1 CDS P423_16215 NC_022648.1 3322603 3323106 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; C4-dicarboxylate ABC transporter permease 3322603..3323106 Escherichia coli JJ1886 17432061 YP_008723233.1 CDS P423_16220 NC_022648.1 3323106 3324407 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3323106..3324407 Escherichia coli JJ1886 17432062 YP_008723234.1 CDS P423_16225 NC_022648.1 3324463 3325470 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3324463..3325470) Escherichia coli JJ1886 17432063 YP_008723235.1 CDS ansB NC_022648.1 3325587 3326633 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-asparaginase complement(3325587..3326633) Escherichia coli JJ1886 17432064 YP_008723236.1 CDS P423_16235 NC_022648.1 3326809 3327528 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3326809..3327528) Escherichia coli JJ1886 17432065 YP_008723237.1 CDS P423_16240 NC_022648.1 3327712 3328038 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3327712..3328038) Escherichia coli JJ1886 17432066 YP_008723238.1 CDS trmB NC_022648.1 3328038 3328757 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (guanine-N(7)-)-methyltransferase complement(3328038..3328757) Escherichia coli JJ1886 17432067 YP_008723239.1 CDS P423_16250 NC_022648.1 3328918 3329970 D Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine DNA glycosylase 3328918..3329970 Escherichia coli JJ1886 17432068 YP_008723240.1 CDS P423_16255 NC_022648.1 3329998 3330273 D protects iron-sulfur proteins against oxidative damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative damage protection protein 3329998..3330273 Escherichia coli JJ1886 17432069 YP_008723241.1 CDS mltC NC_022648.1 3330338 3331417 D Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein transglycosylase C 3330338..3331417 Escherichia coli JJ1886 17432070 YP_008723242.1 CDS P423_16265 NC_022648.1 3331619 3332875 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease 3331619..3332875 Escherichia coli JJ1886 17432071 YP_008723243.1 CDS P423_16270 NC_022648.1 3332924 3335059 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine decarboxylase complement(3332924..3335059) Escherichia coli JJ1886 17432072 YP_008723244.1 CDS P423_16275 NC_022648.1 3335452 3336159 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3335452..3336159 Escherichia coli JJ1886 17432073 YP_008723245.1 CDS P423_16285 NC_022648.1 3336538 3337803 D Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 3336538..3337803 Escherichia coli JJ1886 17432075 YP_008723246.1 CDS P423_16290 NC_022648.1 3338059 3339102 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3338059..3339102 Escherichia coli JJ1886 17432076 YP_008723247.1 CDS P423_16295 NC_022648.1 3339826 3340329 D Derived by automated computational analysis using gene prediction method: Protein Homology.; insB 3339826..3340329 Escherichia coli JJ1886 17432077 YP_008723248.1 CDS P423_16300 NC_022648.1 3340796 3341296 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3340796..3341296) Escherichia coli JJ1886 17432078 YP_008723249.1 CDS P423_16305 NC_022648.1 3341619 3342122 R Derived by automated computational analysis using gene prediction method: Protein Homology.; insB complement(3341619..3342122) Escherichia coli JJ1886 17432079 YP_008723250.1 CDS P423_16310 NC_022648.1 3343327 3343434 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Pap(21)B protein complement(3343327..3343434) Escherichia coli JJ1886 17433816 YP_008723251.1 CDS P423_16315 NC_022648.1 3343839 3344072 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Major pilus subunit operon regulatory protein 3343839..3344072 Escherichia coli JJ1886 17432081 YP_008723252.1 CDS P423_16325 NC_022648.1 3345523 3345849 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase complement(3345523..3345849) Escherichia coli JJ1886 17432083 YP_008723253.1 CDS P423_16330 NC_022648.1 3346122 3346298 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3346122..3346298) Escherichia coli JJ1886 17432084 YP_008723254.1 CDS P423_16335 NC_022648.1 3346589 3347335 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(3346589..3347335) Escherichia coli JJ1886 17432085 YP_008723255.1 CDS P423_16340 NC_022648.1 3347887 3348147 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3347887..3348147 Escherichia coli JJ1886 17432086 YP_008723256.1 CDS P423_16345 NC_022648.1 3348189 3348749 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; TetR family transcriptional regulator 3348189..3348749 Escherichia coli JJ1886 17432087 YP_008723257.1 CDS P423_16350 NC_022648.1 3348789 3349217 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3348789..3349217 Escherichia coli JJ1886 17432088 YP_008723258.1 CDS P423_16355 NC_022648.1 3349935 3351128 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MFS transporter complement(3349935..3351128) Escherichia coli JJ1886 17432089 YP_008723259.1 CDS P423_16360 NC_022648.1 3351264 3352988 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3351264..3352988 Escherichia coli JJ1886 17432090 YP_008723260.1 CDS P423_16365 NC_022648.1 3352989 3353936 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; N(6)-hydroxylysine O-acetyltransferase 3352989..3353936 Escherichia coli JJ1886 17432091 YP_008723261.1 CDS P423_16370 NC_022648.1 3353936 3355678 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aerobactin synthase IucC 3353936..3355678 Escherichia coli JJ1886 17432092 YP_008723262.1 CDS P423_16375 NC_022648.1 3355675 3356952 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lysine 6-monooxygenase 3355675..3356952 Escherichia coli JJ1886 17432093 YP_008723263.1 CDS P423_16380 NC_022648.1 3357034 3359235 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ligand-gated channel protein 3357034..3359235 Escherichia coli JJ1886 17432094 YP_008723264.1 CDS P423_16390 NC_022648.1 3360890 3364066 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; autotransporter 3360890..3364066 Escherichia coli JJ1886 17432095 YP_008723265.1 CDS P423_16395 NC_022648.1 3364113 3364286 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3364113..3364286 Escherichia coli JJ1886 17432096 YP_008723266.1 CDS P423_16400 NC_022648.1 3364338 3364706 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 3364338..3364706 Escherichia coli JJ1886 17432097 YP_008723267.1 CDS P423_16405 NC_022648.1 3364780 3365814 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3364780..3365814 Escherichia coli JJ1886 17432098 YP_008723268.1 CDS P423_16410 NC_022648.1 3365899 3366717 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase 3365899..3366717 Escherichia coli JJ1886 17432099 YP_008723269.1 CDS P423_16415 NC_022648.1 3366729 3367184 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3366729..3367184 Escherichia coli JJ1886 17432100 YP_008723270.1 CDS P423_16420 NC_022648.1 3367600 3368061 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS3 3367600..3368061 Escherichia coli JJ1886 17432101 YP_008723271.1 CDS P423_16430 NC_022648.1 3369142 3369345 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lactate permease complement(3369142..3369345) Escherichia coli JJ1886 17432103 YP_008723272.1 CDS P423_16435 NC_022648.1 3370595 3370810 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3370595..3370810) Escherichia coli JJ1886 17432104 YP_008723273.1 CDS P423_16440 NC_022648.1 3370814 3371173 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3370814..3371173) Escherichia coli JJ1886 17432105 YP_008723274.1 CDS P423_16445 NC_022648.1 3371464 3371706 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3371464..3371706) Escherichia coli JJ1886 17432106 YP_008723275.1 CDS P423_16450 NC_022648.1 3372568 3374577 R IrgA-homologue adhesin (Iha); TonB-dependent; acts as a specific receptor of enterobactin; fur-regulated; urovirulence factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ligand-gated channel complement(3372568..3374577) Escherichia coli JJ1886 17432107 YP_008723276.1 CDS P423_16455 NC_022648.1 3375158 3375814 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase complement(3375158..3375814) Escherichia coli JJ1886 17432108 YP_008723277.1 CDS P423_16460 NC_022648.1 3376021 3376386 R represses IS2 gene transcription; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS2 complement(3376021..3376386) Escherichia coli JJ1886 17432109 YP_008723278.1 CDS P423_16465 NC_022648.1 3376538 3377524 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 9-O-acetyl-N-acetylneuraminic acid deacetylase complement(3376538..3377524) Escherichia coli JJ1886 17432110 YP_008723279.1 CDS P423_16470 NC_022648.1 3377624 3378358 D Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3377624..3378358 Escherichia coli JJ1886 17432111 YP_008723280.1 CDS P423_16475 NC_022648.1 3378394 3379317 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hydrolase complement(3378394..3379317) Escherichia coli JJ1886 17432112 YP_008723281.1 CDS P423_16480 NC_022648.1 3379379 3380488 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminic acid mutarotase complement(3379379..3380488) Escherichia coli JJ1886 17432113 YP_008723282.1 CDS P423_16485 NC_022648.1 3380501 3381211 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminic acid channel protein complement(3380501..3381211) Escherichia coli JJ1886 17432114 YP_008723283.1 CDS P423_16490 NC_022648.1 3381257 3382087 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptidase S9 complement(3381257..3382087) Escherichia coli JJ1886 17432115 YP_008723284.1 CDS P423_16495 NC_022648.1 3382091 3383563 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sialic acid transporter complement(3382091..3383563) Escherichia coli JJ1886 17432116 YP_008723285.1 CDS P423_16500 NC_022648.1 3383612 3384487 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine kinase complement(3383612..3384487) Escherichia coli JJ1886 17432117 YP_008723286.1 CDS P423_16505 NC_022648.1 3384521 3385438 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminate lyase complement(3384521..3385438) Escherichia coli JJ1886 17432118 YP_008723287.1 CDS P423_16510 NC_022648.1 3386099 3386524 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 3386099..3386524 Escherichia coli JJ1886 17432119 YP_008723288.1 CDS P423_16515 NC_022648.1 3386521 3386871 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase 3386521..3386871 Escherichia coli JJ1886 17432120 YP_008723289.1 CDS P423_16520 NC_022648.1 3386902 3388002 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS66 3386902..3388002 Escherichia coli JJ1886 17432121 YP_008723290.1 CDS P423_16525 NC_022648.1 3387999 3389537 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS66 3387999..3389537 Escherichia coli JJ1886 17432122 YP_008723291.1 CDS P423_16530 NC_022648.1 3389758 3390141 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3389758..3390141) Escherichia coli JJ1886 17432123 YP_008723292.1 CDS P423_16535 NC_022648.1 3390308 3390877 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3390308..3390877) Escherichia coli JJ1886 17432124 YP_008723293.1 CDS P423_16540 NC_022648.1 3391386 3391586 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3391386..3391586) Escherichia coli JJ1886 17432125 YP_008723294.1 CDS P423_16545 NC_022648.1 3391606 3391746 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; gene expression modulator complement(3391606..3391746) Escherichia coli JJ1886 17432126 YP_008723295.1 CDS P423_16550 NC_022648.1 3392703 3392909 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3392703..3392909 Escherichia coli JJ1886 17432127 YP_008723296.1 CDS P423_16555 NC_022648.1 3392995 3393567 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3392995..3393567 Escherichia coli JJ1886 17432128 YP_008723297.1 CDS P423_16560 NC_022648.1 3393688 3395178 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3393688..3395178) Escherichia coli JJ1886 17432129 YP_008723298.1 CDS P423_16565 NC_022648.1 3396510 3397382 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3396510..3397382 Escherichia coli JJ1886 17432130 YP_008723299.1 CDS P423_16570 NC_022648.1 3397716 3400838 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3397716..3400838 Escherichia coli JJ1886 17432131 YP_008723300.1 CDS P423_16575 NC_022648.1 3400987 3402060 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3400987..3402060 Escherichia coli JJ1886 17432132 YP_008723301.1 CDS P423_16580 NC_022648.1 3402136 3402591 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3402136..3402591 Escherichia coli JJ1886 17432133 YP_008723302.1 CDS P423_16585 NC_022648.1 3402670 3402903 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3402670..3402903 Escherichia coli JJ1886 17432134 YP_008723303.1 CDS P423_16590 NC_022648.1 3403004 3403822 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3403004..3403822 Escherichia coli JJ1886 17432135 YP_008723304.1 CDS P423_16595 NC_022648.1 3403877 3404362 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3403877..3404362 Escherichia coli JJ1886 17432136 YP_008723305.1 CDS P423_16600 NC_022648.1 3404378 3404854 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3404378..3404854 Escherichia coli JJ1886 17432137 YP_008723306.1 CDS P423_16605 NC_022648.1 3404917 3405138 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3404917..3405138 Escherichia coli JJ1886 17432138 YP_008723307.1 CDS P423_16610 NC_022648.1 3405157 3405801 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; antitoxin of the YeeV-YeeU toxin-antitoxin system 3405157..3405801 Escherichia coli JJ1886 17432139 YP_008723308.1 CDS P423_16615 NC_022648.1 3405851 3406219 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 3405851..3406219 Escherichia coli JJ1886 17432140 YP_008723309.1 CDS P423_16620 NC_022648.1 3406308 3406685 D Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin 3406308..3406685 Escherichia coli JJ1886 17432141 YP_008723310.1 CDS P423_16625 NC_022648.1 3406682 3407170 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3406682..3407170 Escherichia coli JJ1886 17432142 YP_008723311.1 CDS P423_16630 NC_022648.1 3407187 3407384 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3407187..3407384 Escherichia coli JJ1886 17432143 YP_008723312.1 CDS P423_16635 NC_022648.1 3407466 3408314 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction methylase 3407466..3408314 Escherichia coli JJ1886 17432144 YP_008723313.1 CDS P423_16640 NC_022648.1 3408383 3408778 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; S-adenosylhomocysteine hydrolase 3408383..3408778 Escherichia coli JJ1886 17432145 YP_008723314.1 CDS P423_16645 NC_022648.1 3408771 3409511 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3408771..3409511 Escherichia coli JJ1886 17432146 YP_008723315.1 CDS P423_16650 NC_022648.1 3410136 3410291 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 3410136..3410291 Escherichia coli JJ1886 17432147 YP_008723316.1 CDS P423_16655 NC_022648.1 3411102 3412085 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose 5-phosphate isomerase 3411102..3412085 Escherichia coli JJ1886 17432148 YP_008723317.1 CDS P423_16660 NC_022648.1 3412157 3413305 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; capsule polysaccharide transporter 3412157..3413305 Escherichia coli JJ1886 17432149 YP_008723318.1 CDS P423_16665 NC_022648.1 3413329 3415005 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; polysialic acid transporter 3413329..3415005 Escherichia coli JJ1886 17432150 YP_008723319.1 CDS P423_16670 NC_022648.1 3415015 3415755 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-manno-octulosonate cytidylyltransferase 3415015..3415755 Escherichia coli JJ1886 17432151 YP_008723320.1 CDS P423_16675 NC_022648.1 3415752 3417779 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; capsule polysaccharide transporter 3415752..3417779 Escherichia coli JJ1886 17432152 YP_008723321.1 CDS P423_16680 NC_022648.1 3417877 3419007 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; capsular polysaccharide biosynthesis protein 3417877..3419007 Escherichia coli JJ1886 17432153 YP_008723322.1 CDS P423_16685 NC_022648.1 3419552 3420181 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transferase complement(3419552..3420181) Escherichia coli JJ1886 17432154 YP_008723323.1 CDS P423_16690 NC_022648.1 3420203 3422323 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3420203..3422323) Escherichia coli JJ1886 17432155 YP_008723324.1 CDS P423_16700 NC_022648.1 3423594 3424262 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter ATP-binding protein complement(3423594..3424262) Escherichia coli JJ1886 17432157 YP_008723325.1 CDS P423_16705 NC_022648.1 3424259 3425035 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; polysialic acid transporter complement(3424259..3425035) Escherichia coli JJ1886 17432158 YP_008723326.1 CDS P423_16710 NC_022648.1 3426192 3426770 R Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein complement(3426192..3426770) Escherichia coli JJ1886 17432159 YP_008723327.1 CDS P423_16715 NC_022648.1 3426772 3427950 R similar to general secretory pathway protein L; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GspL complement(3426772..3427950) Escherichia coli JJ1886 17432160 YP_008723328.1 CDS P423_16720 NC_022648.1 3427947 3428924 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type II secretion system protein complement(3427947..3428924) Escherichia coli JJ1886 17432161 YP_008723329.1 CDS P423_16725 NC_022648.1 3428921 3429490 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; general secretion pathway protein J complement(3428921..3429490) Escherichia coli JJ1886 17432162 YP_008723330.1 CDS P423_16730 NC_022648.1 3429523 3429894 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type II secretion system protein complement(3429523..3429894) Escherichia coli JJ1886 17432163 YP_008723331.1 CDS P423_16735 NC_022648.1 3429891 3430454 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; general secretion pathway protein H complement(3429891..3430454) Escherichia coli JJ1886 17432164 YP_008723332.1 CDS P423_16740 NC_022648.1 3430458 3430913 R Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein G complement(3430458..3430913) Escherichia coli JJ1886 17432165 YP_008723333.1 CDS P423_16745 NC_022648.1 3430930 3432153 R Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein F complement(3430930..3432153) Escherichia coli JJ1886 17432166 YP_008723334.1 CDS P423_16750 NC_022648.1 3432153 3433646 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3432153..3433646) Escherichia coli JJ1886 17432167 YP_008723335.1 CDS P423_16755 NC_022648.1 3433646 3435691 R Derived by automated computational analysis using gene prediction method: Protein Homology.; secretion system protein D complement(3433646..3435691) Escherichia coli JJ1886 17432168 YP_008723336.1 CDS P423_16760 NC_022648.1 3435736 3436566 R part of the general (type II) secretion pathway (GSP), a signal sequence-dependent process responsible for protein export; involved in trans-location of exoproteins from the cytoplasm to the periplasm; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type II secretion system protein C complement(3435736..3436566) Escherichia coli JJ1886 17432169 YP_008723337.1 CDS P423_16765 NC_022648.1 3436713 3437123 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3436713..3437123) Escherichia coli JJ1886 17432170 YP_008723338.1 CDS P423_16770 NC_022648.1 3437189 3437998 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase A24 complement(3437189..3437998) Escherichia coli JJ1886 17432171 YP_008723339.1 CDS P423_16775 NC_022648.1 3438128 3442552 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Accessory colonization factor AcfD complement(3438128..3442552) Escherichia coli JJ1886 17432172 YP_008723340.1 CDS P423_16780 NC_022648.1 3443169 3444833 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate permease complement(3443169..3444833) Escherichia coli JJ1886 17432173 YP_008723341.1 CDS P423_16785 NC_022648.1 3445206 3447377 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate synthase complement(3445206..3447377) Escherichia coli JJ1886 17432174 YP_008723342.1 CDS P423_16790 NC_022648.1 3447399 3447803 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3447399..3447803) Escherichia coli JJ1886 17432175 YP_008723343.1 CDS glcF NC_022648.1 3447808 3449031 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycolate oxidase complement(3447808..3449031) Escherichia coli JJ1886 17432176 YP_008723344.1 CDS glcE NC_022648.1 3449042 3450094 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding protein complement(3449042..3450094) Escherichia coli JJ1886 17432177 YP_008723345.1 CDS P423_16805 NC_022648.1 3450094 3451593 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding protein complement(3450094..3451593) Escherichia coli JJ1886 17432178 YP_008723346.1 CDS P423_16810 NC_022648.1 3452615 3453757 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein complement(3452615..3453757) Escherichia coli JJ1886 17432179 YP_008723347.1 CDS P423_16815 NC_022648.1 3454161 3455849 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3454161..3455849 Escherichia coli JJ1886 17432180 YP_008723348.1 CDS P423_16820 NC_022648.1 3455846 3456760 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3455846..3456760 Escherichia coli JJ1886 17432181 YP_008723349.1 CDS P423_16825 NC_022648.1 3456813 3457040 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3456813..3457040 Escherichia coli JJ1886 17432182 YP_008723350.1 CDS P423_16830 NC_022648.1 3457040 3458212 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 8-amino-7-oxononanoate synthase 3457040..3458212 Escherichia coli JJ1886 17432183 YP_008723351.1 CDS P423_16835 NC_022648.1 3458247 3459326 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; permease complement(3458247..3459326) Escherichia coli JJ1886 17432184 YP_008723352.1 CDS P423_16840 NC_022648.1 3459323 3460393 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; permease complement(3459323..3460393) Escherichia coli JJ1886 17432185 YP_008723353.1 CDS P423_16845 NC_022648.1 3460424 3460984 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3460424..3460984) Escherichia coli JJ1886 17432186 YP_008723354.1 CDS P423_16850 NC_022648.1 3460996 3461820 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3460996..3461820) Escherichia coli JJ1886 17432187 YP_008723355.1 CDS P423_16855 NC_022648.1 3461820 3463169 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3461820..3463169) Escherichia coli JJ1886 17432188 YP_008723356.1 CDS P423_16860 NC_022648.1 3463215 3463988 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3463215..3463988) Escherichia coli JJ1886 17432189 YP_008723357.1 CDS P423_16865 NC_022648.1 3464020 3464733 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3464020..3464733) Escherichia coli JJ1886 17432190 YP_008723358.1 CDS P423_16870 NC_022648.1 3464907 3465599 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein 3464907..3465599 Escherichia coli JJ1886 17432191 YP_008723359.1 CDS P423_16875 NC_022648.1 3465648 3467147 R involved in the transport of inorganic phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter PitA complement(3465648..3467147) Escherichia coli JJ1886 17432192 YP_008723360.1 CDS P423_16880 NC_022648.1 3467439 3469298 R catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3467439..3469298) Escherichia coli JJ1886 17432193 YP_008723361.1 CDS P423_16885 NC_022648.1 3469503 3470369 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GSH-dependent disulfide bond oxidoreductase 3469503..3470369 Escherichia coli JJ1886 17432194 YP_008723362.1 CDS P423_16890 NC_022648.1 3470439 3470687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 accessory protein HypG complement(3470439..3470687) Escherichia coli JJ1886 17432195 YP_008723363.1 CDS hypA NC_022648.1 3470700 3471041 R plays a role in hydrogenase nickel cofactor insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein complement(3470700..3471041) Escherichia coli JJ1886 17432196 YP_008723364.1 CDS P423_16900 NC_022648.1 3471034 3471522 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase complement(3471034..3471522) Escherichia coli JJ1886 17432197 YP_008723365.1 CDS hybD NC_022648.1 3471515 3472009 R protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 maturation endopeptidase complement(3471515..3472009) Escherichia coli JJ1886 17432198 YP_008723366.1 CDS P423_16910 NC_022648.1 3472009 3473712 R involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 large subunit complement(3472009..3473712) Escherichia coli JJ1886 17432199 YP_008723367.1 CDS P423_16915 NC_022648.1 3473709 3474887 R HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 b cytochrome subunit complement(3473709..3474887) Escherichia coli JJ1886 17432200 YP_008723368.1 CDS P423_16920 NC_022648.1 3474877 3475863 R Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase complement(3474877..3475863) Escherichia coli JJ1886 17432201 YP_008723369.1 CDS P423_16925 NC_022648.1 3475866 3476984 R involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 small subunit complement(3475866..3476984) Escherichia coli JJ1886 17432202 YP_008723370.1 CDS P423_16930 NC_022648.1 3477173 3477460 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3477173..3477460) Escherichia coli JJ1886 17432203 YP_008723371.1 CDS P423_16935 NC_022648.1 3477579 3478466 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dienelactone hydrolase complement(3477579..3478466) Escherichia coli JJ1886 17432204 YP_008723372.1 CDS P423_16940 NC_022648.1 3478623 3479663 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-glyceraldehyde 3-phosphate reductase 3478623..3479663 Escherichia coli JJ1886 17432205 YP_008723373.1 CDS P423_16945 NC_022648.1 3479703 3480197 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3479703..3480197) Escherichia coli JJ1886 17432206 YP_008723374.1 CDS P423_16950 NC_022648.1 3480385 3481272 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3480385..3481272 Escherichia coli JJ1886 17432207 YP_008723375.1 CDS P423_16955 NC_022648.1 3481311 3481736 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; biopolymer transporter ExbD complement(3481311..3481736) Escherichia coli JJ1886 17432208 YP_008723376.1 CDS P423_16960 NC_022648.1 3481743 3482477 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; biopolymer transporter ExbB complement(3481743..3482477) Escherichia coli JJ1886 17432209 YP_008723377.1 CDS P423_16965 NC_022648.1 3482600 3482686 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3482600..3482686) Escherichia coli JJ1886 17432210 YP_008723378.1 CDS P423_16970 NC_022648.1 3482729 3483916 D catalyzes the formation of L-homocysteine from cystathionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cystathionine beta-lyase 3482729..3483916 Escherichia coli JJ1886 17432211 YP_008723379.1 CDS P423_16975 NC_022648.1 3484056 3484715 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3484056..3484715 Escherichia coli JJ1886 17432212 YP_008723380.1 CDS P423_16980 NC_022648.1 3484755 3485711 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(3484755..3485711) Escherichia coli JJ1886 17432213 YP_008723381.1 CDS P423_16985 NC_022648.1 3485848 3487011 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde oxidoreductase 3485848..3487011 Escherichia coli JJ1886 17432214 YP_008723382.1 CDS dkgA NC_022648.1 3487116 3487943 D methylglyoxal reductase/beta-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,5-diketo-D-gluconic acid reductase 3487116..3487943 Escherichia coli JJ1886 17432215 YP_008723383.1 CDS P423_16995 NC_022648.1 3488143 3489069 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3488143..3489069 Escherichia coli JJ1886 17432216 YP_008723384.1 CDS P423_17000 NC_022648.1 3489120 3489377 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3489120..3489377 Escherichia coli JJ1886 17432217 YP_008723385.1 CDS P423_17005 NC_022648.1 3489419 3491638 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3489419..3491638) Escherichia coli JJ1886 17432218 YP_008723386.1 CDS P423_17010 NC_022648.1 3491890 3492639 D regulates the expression of uxuBA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3491890..3492639 Escherichia coli JJ1886 17432219 YP_008723387.1 CDS P423_17015 NC_022648.1 3492962 3494434 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase 3492962..3494434 Escherichia coli JJ1886 17432220 YP_008723388.1 CDS P423_17020 NC_022648.1 3494431 3495447 D Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate oxidoreductase 3494431..3495447 Escherichia coli JJ1886 17432221 YP_008723389.1 CDS P423_17025 NC_022648.1 3495458 3496468 D catalyzes the formation of oxalurate from ureidoglycolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ureidoglycolate dehydrogenase 3495458..3496468 Escherichia coli JJ1886 17432222 YP_008723390.1 CDS P423_17030 NC_022648.1 3496541 3497524 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; C4-dicarboxylate ABC transporter substrate-binding protein 3496541..3497524 Escherichia coli JJ1886 17432223 YP_008723391.1 CDS P423_17035 NC_022648.1 3497566 3498048 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; C4-dicarboxylate ABC transporter permease 3497566..3498048 Escherichia coli JJ1886 17432224 YP_008723392.1 CDS P423_17040 NC_022648.1 3498059 3499363 D TRAP family transporter; with YiaMO is involved in the uptake of L-dehydroascorbate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydroascorbate transporter 3498059..3499363 Escherichia coli JJ1886 17432225 YP_008723393.1 CDS P423_17045 NC_022648.1 3499434 3500846 R septal ring component that protects the divisome from stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsI complement(3499434..3500846) Escherichia coli JJ1886 17432226 YP_008723394.1 CDS P423_17050 NC_022648.1 3500921 3501658 R catalyzes the formation of 1,2-diacyl-sn-glycerol 3-phosphate from 1-acyl-sn-glycerol 3-phosphate using either acyl-CoA or acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3500921..3501658) Escherichia coli JJ1886 17432227 YP_008723395.1 CDS P423_17055 NC_022648.1 3501893 3504151 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase IV subunit A complement(3501893..3504151) Escherichia coli JJ1886 17432228 YP_008723396.1 CDS P423_17060 NC_022648.1 3504289 3505896 R is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein complement(3504289..3505896) Escherichia coli JJ1886 17432229 YP_008723397.1 CDS P423_17065 NC_022648.1 3506005 3506487 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(3506005..3506487) Escherichia coli JJ1886 17432230 YP_008723398.1 CDS P423_17070 NC_022648.1 3506540 3506932 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3506540..3506932) Escherichia coli JJ1886 17432231 YP_008723399.1 CDS P423_17075 NC_022648.1 3507084 3507743 D response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3507084..3507743 Escherichia coli JJ1886 17432232 YP_008723400.1 CDS P423_17080 NC_022648.1 3507740 3509089 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein QseC 3507740..3509089 Escherichia coli JJ1886 17432233 YP_008723401.1 CDS P423_17085 NC_022648.1 3509135 3509467 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3509135..3509467) Escherichia coli JJ1886 17432234 YP_008723402.1 CDS P423_17090 NC_022648.1 3509474 3510184 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3509474..3510184) Escherichia coli JJ1886 17432235 YP_008723403.1 CDS P423_17095 NC_022648.1 3510187 3510666 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Hcp complement(3510187..3510666) Escherichia coli JJ1886 17432236 YP_008723404.1 CDS P423_17100 NC_022648.1 3510917 3511498 D involved in drug resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADPH quinone reductase MdaB 3510917..3511498 Escherichia coli JJ1886 17432237 YP_008723405.1 CDS P423_17105 NC_022648.1 3511529 3511843 D catalyzes the oxidation of menadiol to menadione; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinol monooxygenase 3511529..3511843 Escherichia coli JJ1886 17432238 YP_008723406.1 CDS P423_17110 NC_022648.1 3511888 3512775 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RpiR family transcriptional regulator complement(3511888..3512775) Escherichia coli JJ1886 17432239 YP_008723407.1 CDS P423_17115 NC_022648.1 3512772 3513719 R Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit YidC complement(3512772..3513719) Escherichia coli JJ1886 17432240 YP_008723408.1 CDS P423_17120 NC_022648.1 3513730 3514779 R Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter complement(3513730..3514779) Escherichia coli JJ1886 17432241 YP_008723409.1 CDS P423_17125 NC_022648.1 3514776 3515759 R with FepBCG is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter membrane protein complement(3514776..3515759) Escherichia coli JJ1886 17432242 YP_008723410.1 CDS P423_17130 NC_022648.1 3515756 3516565 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter complement(3515756..3516565) Escherichia coli JJ1886 17432243 YP_008723411.1 CDS P423_17135 NC_022648.1 3516939 3519080 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor 3516939..3519080 Escherichia coli JJ1886 17432244 YP_008723412.1 CDS P423_17140 NC_022648.1 3519144 3521036 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase IV subunit B complement(3519144..3521036) Escherichia coli JJ1886 17432245 YP_008723413.1 CDS P423_17145 NC_022648.1 3521065 3521646 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase complement(3521065..3521646) Escherichia coli JJ1886 17432246 YP_008723414.1 CDS P423_17150 NC_022648.1 3521646 3522473 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 3',5'-cyclic-nucleotide phosphodiesterase complement(3521646..3522473) Escherichia coli JJ1886 17432247 YP_008723415.1 CDS P423_17155 NC_022648.1 3522498 3522920 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydrogenase complement(3522498..3522920) Escherichia coli JJ1886 17432248 YP_008723416.1 CDS nudF NC_022648.1 3522921 3523550 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-ribose pyrophosphatase complement(3522921..3523550) Escherichia coli JJ1886 17432249 YP_008723417.1 CDS tolC NC_022648.1 3523755 3525236 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane channel protein 3523755..3525236 Escherichia coli JJ1886 17432250 YP_008723418.1 CDS P423_17170 NC_022648.1 3525384 3526055 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3525384..3526055 Escherichia coli JJ1886 17432251 YP_008723419.1 CDS P423_17175 NC_022648.1 3526061 3527221 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3526061..3527221 Escherichia coli JJ1886 17432252 YP_008723420.1 CDS P423_17180 NC_022648.1 3527706 3529502 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arylsulfate sulfotransferase 3527706..3529502 Escherichia coli JJ1886 17432253 YP_008723421.1 CDS P423_17185 NC_022648.1 3529520 3530188 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; thiol:disulfide interchange protein 3529520..3530188 Escherichia coli JJ1886 17432254 YP_008723422.1 CDS P423_17190 NC_022648.1 3530203 3530874 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; disulfide oxidoreductase 3530203..3530874 Escherichia coli JJ1886 17432255 YP_008723423.1 CDS P423_17195 NC_022648.1 3530920 3531708 R seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; Derived by automated computational analysis using gene prediction method: Protein Homology.; LigB family dioxygenase complement(3530920..3531708) Escherichia coli JJ1886 17432256 YP_008723424.1 CDS P423_17200 NC_022648.1 3531851 3532624 D Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter ZupT 3531851..3532624 Escherichia coli JJ1886 17432257 YP_008723425.1 CDS P423_17205 NC_022648.1 3532686 3532856 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3532686..3532856) Escherichia coli JJ1886 17432258 YP_008723426.1 CDS P423_17210 NC_022648.1 3533435 3533998 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 3533435..3533998 Escherichia coli JJ1886 17432259 YP_008723427.1 CDS P423_17215 NC_022648.1 3534083 3536605 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3534083..3536605 Escherichia coli JJ1886 17432260 YP_008723428.1 CDS P423_17220 NC_022648.1 3536621 3537361 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein StfD 3536621..3537361 Escherichia coli JJ1886 17432261 YP_008723429.1 CDS P423_17225 NC_022648.1 3537358 3538407 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3537358..3538407 Escherichia coli JJ1886 17432262 YP_008723430.1 CDS ribB NC_022648.1 3538461 3539114 R DHBP synthase; functions during riboflavin biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3538461..3539114) Escherichia coli JJ1886 17432263 YP_008723431.1 CDS P423_17235 NC_022648.1 3539488 3539787 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3539488..3539787 Escherichia coli JJ1886 17432264 YP_008723432.1 CDS P423_17240 NC_022648.1 3539822 3540022 R Involved in glycogen synthesis. May be involved in glycogen priming; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen synthesis protein GlgS complement(3539822..3540022) Escherichia coli JJ1886 17432265 YP_008723433.1 CDS P423_17245 NC_022648.1 3540292 3540921 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3540292..3540921 Escherichia coli JJ1886 17432266 YP_008723434.1 CDS P423_17250 NC_022648.1 3540948 3542609 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3540948..3542609 Escherichia coli JJ1886 17432267 YP_008723435.1 CDS P423_17255 NC_022648.1 3543028 3544461 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3543028..3544461) Escherichia coli JJ1886 17432268 YP_008723436.1 CDS P423_17260 NC_022648.1 3544509 3547349 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3544509..3547349) Escherichia coli JJ1886 17432269 YP_008723437.1 CDS P423_17265 NC_022648.1 3547372 3548673 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3547372..3548673) Escherichia coli JJ1886 17432270 YP_008723438.1 CDS P423_17270 NC_022648.1 3548915 3549535 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3548915..3549535 Escherichia coli JJ1886 17432271 YP_008723439.1 CDS P423_17275 NC_022648.1 3549599 3550837 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA nucleotidyl transferase 3549599..3550837 Escherichia coli JJ1886 17432272 YP_008723440.1 CDS P423_17280 NC_022648.1 3550917 3551738 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP pyrophosphate phosphatase complement(3550917..3551738) Escherichia coli JJ1886 17432273 YP_008723441.1 CDS folB NC_022648.1 3551829 3552197 R catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroneopterin triphosphate 2'-epimerase complement(3551829..3552197) Escherichia coli JJ1886 17432274 YP_008723442.1 CDS P423_17290 NC_022648.1 3552302 3552919 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate acyltransferase 3552302..3552919 Escherichia coli JJ1886 17432275 YP_008723443.1 CDS P423_17295 NC_022648.1 3552932 3553912 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(3552932..3553912) Escherichia coli JJ1886 17432276 YP_008723444.1 CDS P423_17300 NC_022648.1 3554071 3554982 D Involved in the tartrate degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; tartrate dehydratase subunit alpha 3554071..3554982 Escherichia coli JJ1886 17432277 YP_008723445.1 CDS P423_17305 NC_022648.1 3554979 3555584 D Involved in the tartrate degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; L(+)-tartrate dehydratase subunit beta 3554979..3555584 Escherichia coli JJ1886 17432278 YP_008723446.1 CDS P423_17310 NC_022648.1 3555632 3557095 D involved in the transport of L-tartrate into the cell with the export of succinate out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter 3555632..3557095 Escherichia coli JJ1886 17432279 YP_008723447.1 CDS P423_17315 NC_022648.1 3557138 3558151 R universal genome maintenance protein; Kae1/Qri7/OSGEP/YgjD family protein; in Archaea, some Kae1 are found as fusion proteins similar to two distinct proteins in yeast that are involved in the KEOPS complex; kinase associated endopeptidase 1 (Kae1) and a serine/threonine protein kinase (Bud32); in Pyrococcus Kae1 has atypical AP endonuclease activity and inhibits the kinase activity of Bud32; the protein is essential in Escherichia coli and Bacillus subtilis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UGMP family protein complement(3557138..3558151) Escherichia coli JJ1886 17432280 YP_008723448.1 CDS rpsU NC_022648.1 3558389 3558604 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S21 3558389..3558604 Escherichia coli JJ1886 17432281 YP_008723449.1 CDS dnaG NC_022648.1 3558715 3560460 D synthesizes RNA primers at the replication forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA primase 3558715..3560460 Escherichia coli JJ1886 17432282 YP_008723450.1 CDS P423_17330 NC_022648.1 3560655 3562496 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor RpoD 3560655..3562496 Escherichia coli JJ1886 17432283 YP_008723451.1 CDS P423_17335 NC_022648.1 3562574 3563080 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA glycosylase complement(3562574..3563080) Escherichia coli JJ1886 17432284 YP_008723452.1 CDS P423_17345 NC_022648.1 3563334 3564098 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN reductase complement(3563334..3564098) Escherichia coli JJ1886 17432286 YP_008723453.1 CDS P423_17350 NC_022648.1 3564386 3565009 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3564386..3565009 Escherichia coli JJ1886 17432287 YP_008723454.1 CDS P423_17355 NC_022648.1 3565116 3566636 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aerotaxis receptor complement(3565116..3566636) Escherichia coli JJ1886 17432288 YP_008723455.1 CDS P423_17360 NC_022648.1 3566943 3568433 D catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine--2-oxoglutarate aminotransferase 3566943..3568433 Escherichia coli JJ1886 17432289 YP_008723456.1 CDS P423_17365 NC_022648.1 3568475 3568807 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methionyl-tRNA synthetase complement(3568475..3568807) Escherichia coli JJ1886 17432290 YP_008723457.1 CDS P423_17370 NC_022648.1 3569026 3570009 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator 3569026..3570009 Escherichia coli JJ1886 17432291 YP_008723458.1 CDS ebgA NC_022648.1 3570193 3573285 D in Escherichia coli this is the second beta-galactosidase system; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-galactosidase subunit alpha 3570193..3573285 Escherichia coli JJ1886 17432292 YP_008723459.1 CDS ebgC NC_022648.1 3573282 3573731 D in Escherichia coli this is the second beta-galactosidase system; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-galactosidase subunit beta 3573282..3573731 Escherichia coli JJ1886 17432293 YP_008723460.1 CDS P423_17385 NC_022648.1 3573794 3575227 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid permease 3573794..3575227 Escherichia coli JJ1886 17432294 YP_008723461.1 CDS P423_17390 NC_022648.1 3575361 3576431 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3575361..3576431 Escherichia coli JJ1886 17432295 YP_008723462.1 CDS P423_17395 NC_022648.1 3576448 3578799 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-glucosidase 3576448..3578799 Escherichia coli JJ1886 17432296 YP_008723463.1 CDS fadH NC_022648.1 3579025 3581043 D catalyzes the formation of trans-2- enoyl-CoA from 2,4-dienoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,4-dienoyl-CoA reductase 3579025..3581043 Escherichia coli JJ1886 17432297 YP_008723464.1 CDS P423_17405 NC_022648.1 3581088 3581504 R Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator complement(3581088..3581504) Escherichia coli JJ1886 17432298 YP_008723465.1 CDS P423_17410 NC_022648.1 3581501 3581815 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mRNA interferase HigB complement(3581501..3581815) Escherichia coli JJ1886 17432299 YP_008723466.1 CDS P423_17415 NC_022648.1 3582100 3583236 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(3582100..3583236) Escherichia coli JJ1886 17432300 YP_008723467.1 CDS P423_17420 NC_022648.1 3583321 3583824 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3583321..3583824 Escherichia coli JJ1886 17432301 YP_008723468.1 CDS P423_17425 NC_022648.1 3583901 3584593 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3583901..3584593 Escherichia coli JJ1886 17432302 YP_008723469.1 CDS P423_17430 NC_022648.1 3584654 3585658 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3584654..3585658 Escherichia coli JJ1886 17432303 YP_008723470.1 CDS P423_17435 NC_022648.1 3585941 3586906 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3585941..3586906 Escherichia coli JJ1886 17432304 YP_008723471.1 CDS P423_17440 NC_022648.1 3587230 3588474 D involved in the import of serine and threonine coupled with the import of sodium; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter 3587230..3588474 Escherichia coli JJ1886 17432305 YP_008723472.1 CDS P423_17445 NC_022648.1 3588478 3589029 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3588478..3589029) Escherichia coli JJ1886 17432306 YP_008723473.1 CDS P423_17450 NC_022648.1 3589112 3590599 R Derived by automated computational analysis using gene prediction method: Protein Homology.; altronate hydrolase complement(3589112..3590599) Escherichia coli JJ1886 17432307 YP_008723474.1 CDS P423_17455 NC_022648.1 3590614 3592026 R catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucuronate isomerase complement(3590614..3592026) Escherichia coli JJ1886 17432308 YP_008723475.1 CDS P423_17460 NC_022648.1 3592389 3593807 D involved in the transport of aldohexuronates; Derived by automated computational analysis using gene prediction method: Protein Homology.; hexuronate transporter ExuT 3592389..3593807 Escherichia coli JJ1886 17432309 YP_008723476.1 CDS P423_17465 NC_022648.1 3593937 3594713 D regulates the exuT, uxaCA and uxuRAB operons which encode genes involved in hexuronate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 3593937..3594713 Escherichia coli JJ1886 17432310 YP_008723477.1 CDS P423_17470 NC_022648.1 3595058 3595720 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3595058..3595720 Escherichia coli JJ1886 17432311 YP_008723478.1 CDS P423_17475 NC_022648.1 3595724 3596107 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3595724..3596107 Escherichia coli JJ1886 17432312 YP_008723479.1 CDS P423_17480 NC_022648.1 3596254 3596622 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3596254..3596622 Escherichia coli JJ1886 17432313 YP_008723480.1 CDS P423_17485 NC_022648.1 3596660 3596965 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3596660..3596965 Escherichia coli JJ1886 17432314 YP_008723481.1 CDS P423_17490 NC_022648.1 3596968 3597372 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3596968..3597372 Escherichia coli JJ1886 17432315 YP_008723482.1 CDS P423_17495 NC_022648.1 3597362 3597661 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3597362..3597661 Escherichia coli JJ1886 17432316 YP_008723483.1 CDS P423_17500 NC_022648.1 3597848 3598240 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3597848..3598240 Escherichia coli JJ1886 17432317 YP_008723484.1 CDS P423_17505 NC_022648.1 3598310 3599296 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3598310..3599296 Escherichia coli JJ1886 17432318 YP_008723485.1 CDS P423_17510 NC_022648.1 3599579 3599947 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3599579..3599947 Escherichia coli JJ1886 17432319 YP_008723486.1 CDS P423_17515 NC_022648.1 3599981 3600877 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(3599981..3600877) Escherichia coli JJ1886 17432320 YP_008723487.1 CDS P423_17520 NC_022648.1 3600982 3601683 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pirin 3600982..3601683 Escherichia coli JJ1886 17432321 YP_008723488.1 CDS P423_17525 NC_022648.1 3601706 3601870 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3601706..3601870 Escherichia coli JJ1886 17432322 YP_008723489.1 CDS P423_17530 NC_022648.1 3601931 3603241 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3601931..3603241) Escherichia coli JJ1886 17432323 YP_008723490.1 CDS P423_17535 NC_022648.1 3603269 3604102 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3603269..3604102) Escherichia coli JJ1886 17432324 YP_008723491.1 CDS P423_17540 NC_022648.1 3604220 3604522 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 3604220..3604522 Escherichia coli JJ1886 17432325 YP_008723492.1 CDS P423_17545 NC_022648.1 3604711 3605367 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase 3604711..3605367 Escherichia coli JJ1886 17432326 YP_008723493.1 CDS P423_17550 NC_022648.1 3605395 3605853 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3605395..3605853) Escherichia coli JJ1886 17432327 YP_008723494.1 CDS P423_17555 NC_022648.1 3606131 3607495 R catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase complement(3606131..3607495) Escherichia coli JJ1886 17432328 YP_008723495.1 CDS P423_17560 NC_022648.1 3607567 3607956 R has endoribonuclease activity on mRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease L-PSP complement(3607567..3607956) Escherichia coli JJ1886 17432329 YP_008723496.1 CDS P423_17565 NC_022648.1 3607970 3610264 R formate acetyltransferase; catalyzes the formation of formate and acetyl-CoA from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; keto-acid formate acetyltransferase complement(3607970..3610264) Escherichia coli JJ1886 17432330 YP_008723497.1 CDS P423_17570 NC_022648.1 3610298 3611506 R catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; propionate/acetate kinase complement(3610298..3611506) Escherichia coli JJ1886 17432331 YP_008723498.1 CDS P423_17575 NC_022648.1 3611532 3612863 R Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter complement(3611532..3612863) Escherichia coli JJ1886 17432332 YP_008723499.1 CDS P423_17580 NC_022648.1 3612885 3613874 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine dehydratase complement(3612885..3613874) Escherichia coli JJ1886 17432333 YP_008723500.1 CDS P423_17585 NC_022648.1 3613973 3614911 R regulates the tdcABCDEFG operon which is involved in amino acid degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3613973..3614911) Escherichia coli JJ1886 17432334 YP_008723501.1 CDS P423_17590 NC_022648.1 3615100 3615300 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; threonine dehydratase 3615100..3615300 Escherichia coli JJ1886 17432335 YP_008723502.1 CDS P423_17595 NC_022648.1 3616419 3617564 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase complement(3616419..3617564) Escherichia coli JJ1886 17432336 YP_008723503.1 CDS garR NC_022648.1 3617661 3618560 R catalyzes the reduction of tartronate semialdehyde to glycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tartronate semialdehyde reductase complement(3617661..3618560) Escherichia coli JJ1886 17432337 YP_008723504.1 CDS P423_17605 NC_022648.1 3618581 3619351 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3618581..3619351) Escherichia coli JJ1886 17432338 YP_008723505.1 CDS P423_17610 NC_022648.1 3619367 3620701 R Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate transporter complement(3619367..3620701) Escherichia coli JJ1886 17432339 YP_008723506.1 CDS garD NC_022648.1 3621076 3622647 D catalyzes the formation of 5-dehydro-4-deoxy-D-glucarate from D-galactarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactarate dehydrogenase 3621076..3622647 Escherichia coli JJ1886 17432340 YP_008723507.1 CDS P423_17620 NC_022648.1 3622796 3623131 D SohA; PrlF; involved in protein secretion; when overproduced or mutated, it induces growth defect and increased export of a reporter protein; a PrlF mutation induces the activity of the Lon protease, and a Lon-deficient strain suppresses the phenotype conferred by the PrlF mutation; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulator 3622796..3623131 Escherichia coli JJ1886 17432341 YP_008723508.1 CDS P423_17625 NC_022648.1 3623131 3623595 D Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin YhaV 3623131..3623595 Escherichia coli JJ1886 17432342 YP_008723509.1 CDS P423_17630 NC_022648.1 3623650 3624459 R transcriptional repressor for the agaZVWA and agaSYBCDI operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(3623650..3624459) Escherichia coli JJ1886 17432343 YP_008723510.1 CDS P423_17635 NC_022648.1 3624708 3625988 D with KbaY catalyzes the formation of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate from tagatose-1,6-bisphosphate; subunit Z may act as a chaperone for the Y subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; tagatose-bisphosphate aldolase 3624708..3625988 Escherichia coli JJ1886 17432344 YP_008723511.1 CDS P423_17640 NC_022648.1 3626011 3626484 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IIB 3626011..3626484 Escherichia coli JJ1886 17432345 YP_008723512.1 CDS P423_17645 NC_022648.1 3626495 3627274 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake;involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IIC 3626495..3627274 Escherichia coli JJ1886 17432346 YP_008723513.1 CDS P423_17650 NC_022648.1 3627264 3628142 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IID with IIC forms the translocation channel; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IID 3627264..3628142 Escherichia coli JJ1886 17432347 YP_008723514.1 CDS P423_17655 NC_022648.1 3628160 3628594 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IID with IIC forms the translocation channel; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IIA 3628160..3628594 Escherichia coli JJ1886 17432348 YP_008723515.1 CDS P423_17660 NC_022648.1 3628591 3629724 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; N-acetylglucosamine-6-phosphate deacetylase 3628591..3629724 Escherichia coli JJ1886 17432349 YP_008723516.1 CDS P423_17665 NC_022648.1 3630074 3631228 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldose isomerase 3630074..3631228 Escherichia coli JJ1886 17432350 YP_008723517.1 CDS kbaY NC_022648.1 3631241 3632101 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; tagatose-bisphosphate aldolase 3631241..3632101 Escherichia coli JJ1886 17432351 YP_008723518.1 CDS P423_17675 NC_022648.1 3632268 3632744 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IIB 3632268..3632744 Escherichia coli JJ1886 17432352 YP_008723519.1 CDS P423_17680 NC_022648.1 3632783 3633586 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane;protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IIC 3632783..3633586 Escherichia coli JJ1886 17432353 YP_008723520.1 CDS P423_17685 NC_022648.1 3633576 3634367 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IID with IIC forms the translocation channel; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IID 3633576..3634367 Escherichia coli JJ1886 17432354 YP_008723521.1 CDS P423_17690 NC_022648.1 3634368 3635135 D Derived by automated computational analysis using gene prediction method: Protein Homology.; galactosamine-6-phosphate isomerase 3634368..3635135 Escherichia coli JJ1886 17432355 YP_008723522.1 CDS P423_17695 NC_022648.1 3635185 3636048 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase complement(3635185..3636048) Escherichia coli JJ1886 17432356 YP_008723523.1 CDS P423_17700 NC_022648.1 3636113 3638149 D Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein activator LpoA 3636113..3638149 Escherichia coli JJ1886 17432357 YP_008723524.1 CDS P423_17705 NC_022648.1 3638107 3638502 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3638107..3638502 Escherichia coli JJ1886 17432358 YP_008723525.1 CDS P423_17710 NC_022648.1 3638522 3639112 D Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; DnaA initiator-associating protein DiaA 3638522..3639112 Escherichia coli JJ1886 17432359 YP_008723526.1 CDS P423_17715 NC_022648.1 3639122 3639697 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein 3639122..3639697 Escherichia coli JJ1886 17432360 YP_008723527.1 CDS P423_17720 NC_022648.1 3639810 3640850 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3639810..3640850) Escherichia coli JJ1886 17432361 YP_008723528.1 CDS P423_17725 NC_022648.1 3640923 3641558 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3640923..3641558) Escherichia coli JJ1886 17432362 YP_008723529.1 CDS P423_17730 NC_022648.1 3641686 3642204 D Derived by automated computational analysis using gene prediction method: Protein Homology.; general stress protein 3641686..3642204 Escherichia coli JJ1886 17432363 YP_008723530.1 CDS P423_17735 NC_022648.1 3642184 3642627 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3642184..3642627) Escherichia coli JJ1886 17432364 YP_008723531.1 CDS P423_17740 NC_022648.1 3642678 3642980 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GIY-YIG nuclease 3642678..3642980 Escherichia coli JJ1886 17432365 YP_008723532.1 CDS P423_17745 NC_022648.1 3642967 3643470 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyltransferase complement(3642967..3643470) Escherichia coli JJ1886 17432366 YP_008723533.1 CDS P423_17750 NC_022648.1 3643464 3643988 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3643464..3643988) Escherichia coli JJ1886 17432367 YP_008723534.1 CDS P423_17755 NC_022648.1 3644197 3645192 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 3644197..3645192 Escherichia coli JJ1886 17432368 YP_008723535.1 CDS P423_17760 NC_022648.1 3645201 3646079 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 3645201..3646079 Escherichia coli JJ1886 17432369 YP_008723536.1 CDS P423_17765 NC_022648.1 3646160 3647167 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3646160..3647167 Escherichia coli JJ1886 17432370 YP_008723537.1 CDS P423_17770 NC_022648.1 3647285 3648529 R tryptophan transporter of high affinity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan permease complement(3647285..3648529) Escherichia coli JJ1886 17432371 YP_008723538.1 CDS P423_17775 NC_022648.1 3648683 3650572 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase complement(3648683..3650572) Escherichia coli JJ1886 17432372 YP_008723539.1 CDS P423_17780 NC_022648.1 3650752 3651636 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein NlpI complement(3650752..3651636) Escherichia coli JJ1886 17432373 YP_008723540.1 CDS P423_17785 NC_022648.1 3651745 3653880 R Derived by automated computational analysis using gene prediction method: Protein Homology.; polynucleotide phosphorylase/polyadenylase complement(3651745..3653880) Escherichia coli JJ1886 17432374 YP_008723541.1 CDS P423_17790 NC_022648.1 3654127 3654396 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S15 complement(3654127..3654396) Escherichia coli JJ1886 17432375 YP_008723542.1 CDS truB NC_022648.1 3654545 3655489 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase B complement(3654545..3655489) Escherichia coli JJ1886 17432376 YP_008723543.1 CDS rbfA NC_022648.1 3655489 3655890 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-binding factor A complement(3655489..3655890) Escherichia coli JJ1886 17432377 YP_008723544.1 CDS infB NC_022648.1 3656054 3658726 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-2 complement(3656054..3658726) Escherichia coli JJ1886 17432378 YP_008723545.1 CDS nusA NC_022648.1 3658751 3660238 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M54 complement(3658751..3660238) Escherichia coli JJ1886 17432379 YP_008723546.1 CDS P423_17815 NC_022648.1 3660266 3660730 R required for the maturation of the 30S ribosomal subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome maturation protein RimP complement(3660266..3660730) Escherichia coli JJ1886 17432380 YP_008723547.1 CDS P423_17825 NC_022648.1 3661349 3662692 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; argininosuccinate synthase 3661349..3662692 Escherichia coli JJ1886 17432382 YP_008723548.1 CDS P423_17830 NC_022648.1 3662700 3664325 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate starvation-inducible protein PsiE complement(3662700..3664325) Escherichia coli JJ1886 17432383 YP_008723549.1 CDS secG NC_022648.1 3664883 3665215 R Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecG complement(3664883..3665215) Escherichia coli JJ1886 17432385 YP_008723550.1 CDS glmM NC_022648.1 3665443 3666780 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglucosamine mutase complement(3665443..3666780) Escherichia coli JJ1886 17432386 YP_008723551.1 CDS folP NC_022648.1 3666773 3667621 R catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropteroate synthase complement(3666773..3667621) Escherichia coli JJ1886 17432387 YP_008723552.1 CDS hflB NC_022648.1 3667711 3669645 R inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent metalloprotease complement(3667711..3669645) Escherichia coli JJ1886 17432388 YP_008723553.1 CDS rrmJ NC_022648.1 3669745 3670374 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(3669745..3670374) Escherichia coli JJ1886 17432389 YP_008723554.1 CDS P423_17865 NC_022648.1 3670500 3670793 D RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding protein YhbY 3670500..3670793 Escherichia coli JJ1886 17432390 YP_008723555.1 CDS greA NC_022648.1 3670949 3671425 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription elongation factor GreA complement(3670949..3671425) Escherichia coli JJ1886 17432391 YP_008723556.1 CDS P423_17875 NC_022648.1 3671673 3673106 D penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase 3671673..3673106 Escherichia coli JJ1886 17432392 YP_008723557.1 CDS obgE NC_022648.1 3673147 3674319 R ObgE; essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase CgtA complement(3673147..3674319) Escherichia coli JJ1886 17432393 YP_008723558.1 CDS P423_17885 NC_022648.1 3674335 3675300 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3674335..3675300) Escherichia coli JJ1886 17432394 YP_008723559.1 CDS rpmA NC_022648.1 3675427 3675684 R involved in the peptidyltransferase reaction during translation; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L27 complement(3675427..3675684) Escherichia coli JJ1886 17432395 YP_008723560.1 CDS rplU NC_022648.1 3675705 3676016 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L21 complement(3675705..3676016) Escherichia coli JJ1886 17432396 YP_008723561.1 CDS P423_17900 NC_022648.1 3676275 3677246 D Derived by automated computational analysis using gene prediction method: Protein Homology.; octaprenyl diphosphate synthase 3676275..3677246 Escherichia coli JJ1886 17432397 YP_008723562.1 CDS P423_17905 NC_022648.1 3677479 3677757 D activator of maltose metabolism genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3677479..3677757 Escherichia coli JJ1886 17432398 YP_008723563.1 CDS P423_17910 NC_022648.1 3677805 3679064 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3677805..3679064) Escherichia coli JJ1886 17432399 YP_008723564.1 CDS P423_17915 NC_022648.1 3679119 3679388 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3679119..3679388) Escherichia coli JJ1886 17432400 YP_008723565.1 CDS P423_17920 NC_022648.1 3679533 3679826 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipid ABC transporter substrate-binding protein complement(3679533..3679826) Escherichia coli JJ1886 17432401 YP_008723566.1 CDS P423_17925 NC_022648.1 3679826 3680461 R involved in maintaining outer membrane lipid asymmetry; Derived by automated computational analysis using gene prediction method: Protein Homology.; organic solvent ABC transporter substrate-binding protein complement(3679826..3680461) Escherichia coli JJ1886 17432402 YP_008723567.1 CDS P423_17930 NC_022648.1 3680480 3681046 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipid ABC transporter substrate-binding protein complement(3680480..3681046) Escherichia coli JJ1886 17432403 YP_008723568.1 CDS P423_17935 NC_022648.1 3681036 3681818 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease complement(3681036..3681818) Escherichia coli JJ1886 17432404 YP_008723569.1 CDS P423_17940 NC_022648.1 3681826 3682635 R ABC transporter maintaining outer membrane lipid asymmetry; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; organic solvent ABC transporter ATP-binding protein complement(3681826..3682635) Escherichia coli JJ1886 17432405 YP_008723570.1 CDS P423_17945 NC_022648.1 3682845 3683822 D YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 3682845..3683822 Escherichia coli JJ1886 17432406 YP_008723571.1 CDS P423_17950 NC_022648.1 3683836 3684822 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-arabinose 5-phosphate isomerase 3683836..3684822 Escherichia coli JJ1886 17432407 YP_008723572.1 CDS P423_17955 NC_022648.1 3684843 3685409 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3684843..3685409 Escherichia coli JJ1886 17432408 YP_008723573.1 CDS P423_17960 NC_022648.1 3685406 3685981 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein 3685406..3685981 Escherichia coli JJ1886 17432409 YP_008723574.1 CDS P423_17965 NC_022648.1 3685950 3686507 D LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein 3685950..3686507 Escherichia coli JJ1886 17432410 YP_008723575.1 CDS P423_17970 NC_022648.1 3686514 3687239 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipopolysaccharide ABC transporter ATP-binding protein 3686514..3687239 Escherichia coli JJ1886 17432411 YP_008723576.1 CDS P423_17975 NC_022648.1 3687287 3688720 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase factor sigma-54 3687287..3688720 Escherichia coli JJ1886 17432412 YP_008723577.1 CDS P423_17980 NC_022648.1 3688743 3689030 D YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome hibernation promoting factor HPF 3688743..3689030 Escherichia coli JJ1886 17432413 YP_008723578.1 CDS P423_17985 NC_022648.1 3689148 3689639 D involved in nitrogen metabolism; protein IIA is phosphorylated by enzyme I(Ntr); Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA 3689148..3689639 Escherichia coli JJ1886 17432414 YP_008723579.1 CDS P423_17990 NC_022648.1 3689685 3690539 D glucosamine-6-phosphate regulated; inactivates the glmS upregulator glmZ; Derived by automated computational analysis using gene prediction method: Protein Homology.; glmZ(sRNA)-inactivating NTPase 3689685..3690539 Escherichia coli JJ1886 17432415 YP_008723580.1 CDS P423_17995 NC_022648.1 3690536 3690808 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphohistidinoprotein-hexose phosphotransferase 3690536..3690808 Escherichia coli JJ1886 17432416 YP_008723581.1 CDS P423_18000 NC_022648.1 3691021 3691653 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3691021..3691653 Escherichia coli JJ1886 17432417 YP_008723582.1 CDS mtgA NC_022648.1 3691650 3692378 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; monofunctional biosynthetic peptidoglycan transglycosylase complement(3691650..3692378) Escherichia coli JJ1886 17432418 YP_008723583.1 CDS P423_18010 NC_022648.1 3692375 3693028 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isoprenoid biosynthesis protein complement(3692375..3693028) Escherichia coli JJ1886 17432419 YP_008723584.1 CDS P423_18015 NC_022648.1 3693258 3695594 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology.; aerobic respiration control sensor protein ArcB complement(3693258..3695594) Escherichia coli JJ1886 17432420 YP_008723585.1 CDS P423_18020 NC_022648.1 3695690 3696652 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3695690..3696652) Escherichia coli JJ1886 17432421 YP_008723586.1 CDS P423_18025 NC_022648.1 3696665 3696769 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3696665..3696769) Escherichia coli JJ1886 17432422 YP_008723587.1 CDS gltB NC_022648.1 3697186 3701754 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate synthase subunit alpha 3697186..3701754 Escherichia coli JJ1886 17432423 YP_008723588.1 CDS P423_18035 NC_022648.1 3701767 3703185 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate synthase subunit beta 3701767..3703185 Escherichia coli JJ1886 17432424 YP_008723589.1 CDS P423_18040 NC_022648.1 3703253 3703717 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3703253..3703717) Escherichia coli JJ1886 17432425 YP_008723590.1 CDS P423_18045 NC_022648.1 3703714 3704589 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine kinase complement(3703714..3704589) Escherichia coli JJ1886 17432426 YP_008723591.1 CDS P423_18050 NC_022648.1 3704586 3705275 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine-6-phosphate 2-epimerase complement(3704586..3705275) Escherichia coli JJ1886 17432427 YP_008723592.1 CDS P423_18055 NC_022648.1 3705323 3706813 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sialic acid transporter complement(3705323..3706813) Escherichia coli JJ1886 17432428 YP_008723593.1 CDS P423_18060 NC_022648.1 3706922 3707815 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminate lyase complement(3706922..3707815) Escherichia coli JJ1886 17432429 YP_008723594.1 CDS P423_18065 NC_022648.1 3707937 3708728 R Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3707937..3708728) Escherichia coli JJ1886 17432430 YP_008723595.1 CDS P423_18070 NC_022648.1 3708836 3709333 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase complement(3708836..3709333) Escherichia coli JJ1886 17432431 YP_008723596.1 CDS sspA NC_022648.1 3709339 3709977 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.; stringent starvation protein A complement(3709339..3709977) Escherichia coli JJ1886 17432432 YP_008723597.1 CDS P423_18080 NC_022648.1 3710372 3710764 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S9 complement(3710372..3710764) Escherichia coli JJ1886 17432433 YP_008723598.1 CDS P423_18085 NC_022648.1 3710780 3711208 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L13 complement(3710780..3711208) Escherichia coli JJ1886 17432434 YP_008723599.1 CDS P423_18090 NC_022648.1 3711428 3712555 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3711428..3712555) Escherichia coli JJ1886 17432435 YP_008723600.1 CDS P423_18095 NC_022648.1 3712749 3713147 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3712749..3713147 Escherichia coli JJ1886 17432436 YP_008723601.1 CDS P423_18100 NC_022648.1 3713301 3714668 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease DegQ 3713301..3714668 Escherichia coli JJ1886 17432437 YP_008723602.1 CDS P423_18105 NC_022648.1 3714758 3715825 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease 3714758..3715825 Escherichia coli JJ1886 17432438 YP_008723603.1 CDS P423_18110 NC_022648.1 3715888 3716826 R oxidizes malate to oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate dehydrogenase complement(3715888..3716826) Escherichia coli JJ1886 17432439 YP_008723604.1 CDS P423_18115 NC_022648.1 3717261 3717731 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine repressor 3717261..3717731 Escherichia coli JJ1886 17432440 YP_008723605.1 CDS P423_18120 NC_022648.1 3718095 3718358 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3718095..3718358 Escherichia coli JJ1886 17432441 YP_008723606.1 CDS P423_18125 NC_022648.1 3718413 3718685 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3718413..3718685) Escherichia coli JJ1886 17432442 YP_008723607.1 CDS P423_18130 NC_022648.1 3718777 3720744 R with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxybenzoic acid transporter complement(3718777..3720744) Escherichia coli JJ1886 17432443 YP_008723608.1 CDS P423_18135 NC_022648.1 3720750 3721682 R with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxybenzoic acid transporter complement(3720750..3721682) Escherichia coli JJ1886 17432444 YP_008723609.1 CDS P423_18140 NC_022648.1 3721690 3721962 R membrane protein AaeX; the gene is a member of the aaeXAB operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixA complement(3721690..3721962) Escherichia coli JJ1886 17432445 YP_008723610.1 CDS P423_18145 NC_022648.1 3722076 3723005 D for aaeXAB operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3722076..3723005 Escherichia coli JJ1886 17432446 YP_008723611.1 CDS tldD NC_022648.1 3723127 3724572 R responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease TldD complement(3723127..3724572) Escherichia coli JJ1886 17432447 YP_008723612.1 CDS P423_18155 NC_022648.1 3724728 3728528 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3724728..3728528) Escherichia coli JJ1886 17432448 YP_008723613.1 CDS P423_18160 NC_022648.1 3728596 3730065 R involved in the processing of the 5'end of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease G complement(3728596..3730065) Escherichia coli JJ1886 17432449 YP_008723614.1 CDS P423_18165 NC_022648.1 3730055 3730648 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; Maf complement(3730055..3730648) Escherichia coli JJ1886 17432450 YP_008723615.1 CDS P423_18170 NC_022648.1 3730657 3731145 R part of cell wall structural complex MreBCD; transmembrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein MreD complement(3730657..3731145) Escherichia coli JJ1886 17432451 YP_008723616.1 CDS P423_18175 NC_022648.1 3731145 3732248 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein MreC complement(3731145..3732248) Escherichia coli JJ1886 17432452 YP_008723617.1 CDS P423_18180 NC_022648.1 3732314 3733357 R functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein Mbl complement(3732314..3733357) Escherichia coli JJ1886 17432453 YP_008723618.1 CDS P423_18185 NC_022648.1 3733662 3735602 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(3733662..3735602) Escherichia coli JJ1886 17432454 YP_008723619.1 CDS P423_18190 NC_022648.1 3735754 3736728 D Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase 3735754..3736728 Escherichia coli JJ1886 17432455 YP_008723620.1 CDS P423_18195 NC_022648.1 3736765 3736929 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; initiation of DNA replication 3736765..3736929 Escherichia coli JJ1886 17432456 YP_008723621.1 CDS P423_18205 NC_022648.1 3737705 3738175 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxyl carrier protein 3737705..3738175 Escherichia coli JJ1886 17432458 YP_008723622.1 CDS P423_18210 NC_022648.1 3738186 3739535 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxylase subunit 3738186..3739535 Escherichia coli JJ1886 17432459 YP_008723623.1 CDS P423_18215 NC_022648.1 3739627 3740673 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3739627..3740673) Escherichia coli JJ1886 17432460 YP_008723624.1 CDS P423_18220 NC_022648.1 3740670 3741632 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar kinase complement(3740670..3741632) Escherichia coli JJ1886 17432461 YP_008723625.1 CDS rbsC NC_022648.1 3741654 3742643 R functions to transport ribose at high affinity; forms a complex with RbsA2C2B; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose ABC transporter permease complement(3741654..3742643) Escherichia coli JJ1886 17432462 YP_008723626.1 CDS P423_18230 NC_022648.1 3742644 3744143 R with XylFH is part of the high affinity xylose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose ABC transporter ATP-binding protein complement(3742644..3744143) Escherichia coli JJ1886 17432463 YP_008723627.1 CDS P423_18235 NC_022648.1 3744204 3745094 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter complement(3744204..3745094) Escherichia coli JJ1886 17432464 YP_008723628.1 CDS gatY NC_022648.1 3745130 3745984 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(3745130..3745984) Escherichia coli JJ1886 17432465 YP_008723629.1 CDS P423_18245 NC_022648.1 3746325 3747155 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DeoR faimly transcriptional regulator 3746325..3747155 Escherichia coli JJ1886 17432466 YP_008723630.1 CDS P423_18250 NC_022648.1 3747187 3748122 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar kinase 3747187..3748122 Escherichia coli JJ1886 17432467 YP_008723631.1 CDS P423_18255 NC_022648.1 3748215 3748457 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3748215..3748457 Escherichia coli JJ1886 17432468 YP_008723632.1 CDS panF NC_022648.1 3748447 3749898 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:pantothenate symporter 3748447..3749898 Escherichia coli JJ1886 17432469 YP_008723633.1 CDS prmA NC_022648.1 3749910 3750791 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein L11 methyltransferase 3749910..3750791 Escherichia coli JJ1886 17432470 YP_008723634.1 CDS P423_18270 NC_022648.1 3751120 3752085 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase B 3751120..3752085 Escherichia coli JJ1886 17432471 YP_008723635.1 CDS fis NC_022648.1 3752111 3752407 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; Fis family transcriptional regulator 3752111..3752407 Escherichia coli JJ1886 17432472 YP_008723636.1 CDS P423_18280 NC_022648.1 3752492 3753376 D Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase 3752492..3753376 Escherichia coli JJ1886 17432473 YP_008723637.1 CDS P423_18285 NC_022648.1 3753460 3753639 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3753460..3753639 Escherichia coli JJ1886 17432474 YP_008723638.1 CDS P423_18290 NC_022648.1 3753642 3754304 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3753642..3754304) Escherichia coli JJ1886 17432475 YP_008723639.1 CDS P423_18295 NC_022648.1 3754703 3755860 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acriflavine resistance protein E 3754703..3755860 Escherichia coli JJ1886 17432476 YP_008723640.1 CDS P423_18300 NC_022648.1 3755872 3758976 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 3755872..3758976 Escherichia coli JJ1886 17432477 YP_008723641.1 CDS P423_18305 NC_022648.1 3759229 3759450 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3759229..3759450 Escherichia coli JJ1886 17432478 YP_008723642.1 CDS P423_18310 NC_022648.1 3759881 3760906 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein 3759881..3760906 Escherichia coli JJ1886 17432479 YP_008723643.1 CDS P423_18315 NC_022648.1 3760974 3762155 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease 3760974..3762155 Escherichia coli JJ1886 17432480 YP_008723644.1 CDS P423_18320 NC_022648.1 3762165 3763268 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease 3762165..3763268 Escherichia coli JJ1886 17432481 YP_008723645.1 CDS P423_18325 NC_022648.1 3763276 3764034 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein 3763276..3764034 Escherichia coli JJ1886 17432482 YP_008723646.1 CDS P423_18365 NC_022648.1 3769922 3770476 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3769922..3770476 Escherichia coli JJ1886 17432490 YP_008723647.1 CDS P423_18370 NC_022648.1 3770452 3770709 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3770452..3770709) Escherichia coli JJ1886 17432491 YP_008723648.1 CDS P423_18375 NC_022648.1 3770706 3771524 R Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate 5-dehydrogenase complement(3770706..3771524) Escherichia coli JJ1886 17432492 YP_008723649.1 CDS P423_18380 NC_022648.1 3771529 3772101 R involved in the biosynthesis of the threonylcarbamoyladenosine (t6A) residue at position 37 of ANN-decoding tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein complement(3771529..3772101) Escherichia coli JJ1886 17432493 YP_008723650.1 CDS P423_18385 NC_022648.1 3772106 3772648 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3772106..3772648) Escherichia coli JJ1886 17432494 YP_008723651.1 CDS P423_18390 NC_022648.1 3772677 3773150 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3772677..3773150) Escherichia coli JJ1886 17432495 YP_008723652.1 CDS P423_18395 NC_022648.1 3773122 3774246 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3773122..3774246) Escherichia coli JJ1886 17432496 YP_008723653.1 CDS P423_18400 NC_022648.1 3774376 3774885 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide deformylase 3774376..3774885 Escherichia coli JJ1886 17432497 YP_008723654.1 CDS fmt NC_022648.1 3774900 3775847 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionyl-tRNA formyltransferase 3774900..3775847 Escherichia coli JJ1886 17432498 YP_008723655.1 CDS P423_18410 NC_022648.1 3775899 3777188 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3775899..3777188 Escherichia coli JJ1886 17432499 YP_008723656.1 CDS trkA NC_022648.1 3777210 3778586 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter peripheral membrane protein 3777210..3778586 Escherichia coli JJ1886 17432500 YP_008723657.1 CDS mscL NC_022648.1 3778716 3779129 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; large-conductance mechanosensitive channel 3778716..3779129 Escherichia coli JJ1886 17432501 YP_008723658.1 CDS P423_18425 NC_022648.1 3779126 3779344 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Alternative ribosome-rescue factor A complement(3779126..3779344) Escherichia coli JJ1886 17432502 YP_008723659.1 CDS zntR NC_022648.1 3779400 3779825 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-responsive transcriptional regulator complement(3779400..3779825) Escherichia coli JJ1886 17432503 YP_008723660.1 CDS P423_18435 NC_022648.1 3779836 3780204 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3779836..3780204) Escherichia coli JJ1886 17432504 YP_008723661.1 CDS rplQ NC_022648.1 3780311 3780694 R is a component of the macrolide binding site in the peptidyl transferase center; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L17 complement(3780311..3780694) Escherichia coli JJ1886 17432505 YP_008723662.1 CDS P423_18445 NC_022648.1 3780735 3781724 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit alpha complement(3780735..3781724) Escherichia coli JJ1886 17432506 YP_008723663.1 CDS P423_18450 NC_022648.1 3781750 3782370 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S4 complement(3781750..3782370) Escherichia coli JJ1886 17432507 YP_008723664.1 CDS P423_18455 NC_022648.1 3782404 3782793 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S11 complement(3782404..3782793) Escherichia coli JJ1886 17432508 YP_008723665.1 CDS P423_18460 NC_022648.1 3782810 3783166 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S13 complement(3782810..3783166) Escherichia coli JJ1886 17432509 YP_008723666.1 CDS P423_18465 NC_022648.1 3783313 3783429 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L36 complement(3783313..3783429) Escherichia coli JJ1886 17432510 YP_008723667.1 CDS secY NC_022648.1 3783461 3784792 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecY complement(3783461..3784792) Escherichia coli JJ1886 17432511 YP_008723668.1 CDS P423_18475 NC_022648.1 3784800 3785234 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L15 complement(3784800..3785234) Escherichia coli JJ1886 17432512 YP_008723669.1 CDS rpmD NC_022648.1 3785238 3785417 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L30 complement(3785238..3785417) Escherichia coli JJ1886 17432513 YP_008723670.1 CDS P423_18485 NC_022648.1 3785421 3785924 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S5 complement(3785421..3785924) Escherichia coli JJ1886 17432514 YP_008723671.1 CDS P423_18490 NC_022648.1 3785939 3786292 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L18 complement(3785939..3786292) Escherichia coli JJ1886 17432515 YP_008723672.1 CDS P423_18495 NC_022648.1 3786302 3786835 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L6 complement(3786302..3786835) Escherichia coli JJ1886 17432516 YP_008723673.1 CDS P423_18500 NC_022648.1 3786848 3787240 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S8 complement(3786848..3787240) Escherichia coli JJ1886 17432517 YP_008723674.1 CDS rpsN NC_022648.1 3787274 3787579 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S14 complement(3787274..3787579) Escherichia coli JJ1886 17432518 YP_008723675.1 CDS P423_18510 NC_022648.1 3787594 3788133 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L5 complement(3787594..3788133) Escherichia coli JJ1886 17432519 YP_008723676.1 CDS rplX NC_022648.1 3788148 3788462 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L24 complement(3788148..3788462) Escherichia coli JJ1886 17432520 YP_008723677.1 CDS P423_18520 NC_022648.1 3788473 3788844 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L14 complement(3788473..3788844) Escherichia coli JJ1886 17432521 YP_008723678.1 CDS P423_18525 NC_022648.1 3789009 3789263 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S17 complement(3789009..3789263) Escherichia coli JJ1886 17432522 YP_008723679.1 CDS P423_18530 NC_022648.1 3789263 3789454 R one of the stabilizing components for the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L29 complement(3789263..3789454) Escherichia coli JJ1886 17432523 YP_008723680.1 CDS P423_18535 NC_022648.1 3789454 3789864 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L16 complement(3789454..3789864) Escherichia coli JJ1886 17432524 YP_008723681.1 CDS P423_18540 NC_022648.1 3789877 3790578 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S3 complement(3789877..3790578) Escherichia coli JJ1886 17432525 YP_008723682.1 CDS P423_18545 NC_022648.1 3790596 3790928 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L22 complement(3790596..3790928) Escherichia coli JJ1886 17432526 YP_008723683.1 CDS rpsS NC_022648.1 3790943 3791221 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S19 complement(3790943..3791221) Escherichia coli JJ1886 17432527 YP_008723684.1 CDS P423_18555 NC_022648.1 3791238 3792059 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L2 complement(3791238..3792059) Escherichia coli JJ1886 17432528 YP_008723685.1 CDS rplW NC_022648.1 3792077 3792379 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L23 complement(3792077..3792379) Escherichia coli JJ1886 17432529 YP_008723686.1 CDS rplD NC_022648.1 3792376 3792981 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L4 complement(3792376..3792981) Escherichia coli JJ1886 17432530 YP_008723687.1 CDS P423_18570 NC_022648.1 3792992 3793621 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L3 complement(3792992..3793621) Escherichia coli JJ1886 17432531 YP_008723688.1 CDS rpsJ NC_022648.1 3793654 3793965 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S10 complement(3793654..3793965) Escherichia coli JJ1886 17432532 YP_008723689.1 CDS P423_18580 NC_022648.1 3794203 3794622 R involved in type II protein secretion; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein secretion protein GspB complement(3794203..3794622) Escherichia coli JJ1886 17432533 YP_008723690.1 CDS P423_18585 NC_022648.1 3794624 3796093 R Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein A complement(3794624..3796093) Escherichia coli JJ1886 17432534 YP_008723691.1 CDS P423_18590 NC_022648.1 3796273 3797088 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pilus assembly protein PilZ 3796273..3797088 Escherichia coli JJ1886 17432535 YP_008723692.1 CDS P423_18595 NC_022648.1 3797060 3799024 D Derived by automated computational analysis using gene prediction method: Protein Homology.; secretion system protein D 3797060..3799024 Escherichia coli JJ1886 17432536 YP_008723693.1 CDS P423_18600 NC_022648.1 3799034 3800515 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3799034..3800515 Escherichia coli JJ1886 17432537 YP_008723694.1 CDS P423_18605 NC_022648.1 3800512 3801708 D Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein F 3800512..3801708 Escherichia coli JJ1886 17432538 YP_008723695.1 CDS P423_18610 NC_022648.1 3801718 3802155 D Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein G 3801718..3802155 Escherichia coli JJ1886 17432539 YP_008723696.1 CDS P423_18615 NC_022648.1 3802163 3802672 D Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein H 3802163..3802672 Escherichia coli JJ1886 17432540 YP_008723697.1 CDS P423_18620 NC_022648.1 3802669 3803046 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system protein I 3802669..3803046 Escherichia coli JJ1886 17432541 YP_008723698.1 CDS P423_18625 NC_022648.1 3803039 3803626 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system protein J 3803039..3803626 Escherichia coli JJ1886 17432542 YP_008723699.1 CDS P423_18630 NC_022648.1 3803619 3804602 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system protein K 3803619..3804602 Escherichia coli JJ1886 17432543 YP_008723700.1 CDS P423_18635 NC_022648.1 3804617 3805780 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type II secretion system protein L 3804617..3805780 Escherichia coli JJ1886 17432544 YP_008723701.1 CDS P423_18640 NC_022648.1 3805777 3806238 D Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein M 3805777..3806238 Escherichia coli JJ1886 17432545 YP_008723702.1 CDS P423_18650 NC_022648.1 3806939 3807415 R iron storage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; bacterioferritin complement(3806939..3807415) Escherichia coli JJ1886 17432547 YP_008723703.1 CDS P423_18655 NC_022648.1 3807487 3807681 R Derived by automated computational analysis using gene prediction method: Protein Homology.; bacterioferritin-associated ferredoxin complement(3807487..3807681) Escherichia coli JJ1886 17432548 YP_008723704.1 CDS P423_18660 NC_022648.1 3807850 3810552 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lysozyme complement(3807850..3810552) Escherichia coli JJ1886 17432549 YP_008723705.1 CDS tuf NC_022648.1 3810844 3812028 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; elongation factor Tu complement(3810844..3812028) Escherichia coli JJ1886 17432550 YP_008723706.1 CDS fusA NC_022648.1 3812099 3814213 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor G complement(3812099..3814213) Escherichia coli JJ1886 17432551 YP_008723707.1 CDS P423_18675 NC_022648.1 3814310 3814780 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S7 complement(3814310..3814780) Escherichia coli JJ1886 17432552 YP_008723708.1 CDS P423_18680 NC_022648.1 3814877 3815251 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S12 complement(3814877..3815251) Escherichia coli JJ1886 17432553 YP_008723709.1 CDS P423_18685 NC_022648.1 3815377 3815664 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer complex subunit TusB complement(3815377..3815664) Escherichia coli JJ1886 17432554 YP_008723710.1 CDS P423_18690 NC_022648.1 3815671 3816030 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur transfer that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur relay protein TusC complement(3815671..3816030) Escherichia coli JJ1886 17432555 YP_008723711.1 CDS P423_18695 NC_022648.1 3816030 3816416 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer complex subunit TusD complement(3816030..3816416) Escherichia coli JJ1886 17432556 YP_008723712.1 CDS P423_18700 NC_022648.1 3816416 3817138 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3816416..3817138) Escherichia coli JJ1886 17432557 YP_008723713.1 CDS P423_18705 NC_022648.1 3817305 3818117 R rotamase; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(3817305..3818117) Escherichia coli JJ1886 17432558 YP_008723714.1 CDS P423_18710 NC_022648.1 3818338 3818556 D required for phi X174 lysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysis protein 3818338..3818556 Escherichia coli JJ1886 17432559 YP_008723715.1 CDS P423_18715 NC_022648.1 3818605 3819195 R rotamase; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(3818605..3819195) Escherichia coli JJ1886 17432560 YP_008723716.1 CDS P423_18720 NC_022648.1 3819290 3819490 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3819290..3819490) Escherichia coli JJ1886 17432561 YP_008723717.1 CDS P423_18725 NC_022648.1 3819500 3821305 R involved in potassium efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter complement(3819500..3821305) Escherichia coli JJ1886 17432562 YP_008723718.1 CDS P423_18730 NC_022648.1 3821305 3821859 R required for KefB activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter complement(3821305..3821859) Escherichia coli JJ1886 17432563 YP_008723719.1 CDS P423_18735 NC_022648.1 3821987 3823900 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein 3821987..3823900 Escherichia coli JJ1886 17432564 YP_008723720.1 CDS P423_18740 NC_022648.1 3823900 3824922 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 3823900..3824922 Escherichia coli JJ1886 17432565 YP_008723721.1 CDS P423_18745 NC_022648.1 3824916 3825134 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3824916..3825134 Escherichia coli JJ1886 17432566 YP_008723722.1 CDS P423_18750 NC_022648.1 3825188 3826057 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribulokinase 3825188..3826057 Escherichia coli JJ1886 17432567 YP_008723723.1 CDS P423_18755 NC_022648.1 3826112 3826516 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3826112..3826516) Escherichia coli JJ1886 17432568 YP_008723724.1 CDS P423_18760 NC_022648.1 3826818 3827450 D cAMP receptor protein; complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3826818..3827450 Escherichia coli JJ1886 17432569 YP_008723725.1 CDS P423_18765 NC_022648.1 3827501 3829591 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3827501..3829591 Escherichia coli JJ1886 17432570 YP_008723726.1 CDS argD NC_022648.1 3829658 3830878 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyldiaminopimelate aminotransferase complement(3829658..3830878) Escherichia coli JJ1886 17432571 YP_008723727.1 CDS P423_18775 NC_022648.1 3830964 3831527 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate synthase subunit II complement(3830964..3831527) Escherichia coli JJ1886 17432572 YP_008723728.1 CDS P423_18780 NC_022648.1 3831559 3832161 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell filamentation protein Fic complement(3831559..3832161) Escherichia coli JJ1886 17432573 YP_008723729.1 CDS P423_18785 NC_022648.1 3832151 3832318 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3832151..3832318) Escherichia coli JJ1886 17432574 YP_008723730.1 CDS P423_18790 NC_022648.1 3832423 3832995 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(3832423..3832995) Escherichia coli JJ1886 17432575 YP_008723731.1 CDS P423_18795 NC_022648.1 3833266 3834447 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3833266..3834447 Escherichia coli JJ1886 17432576 YP_008723732.1 CDS P423_18800 NC_022648.1 3834709 3837252 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase subunit NirD 3834709..3837252 Escherichia coli JJ1886 17432577 YP_008723733.1 CDS nirD NC_022648.1 3837249 3837575 D involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase small subunit 3837249..3837575 Escherichia coli JJ1886 17432578 YP_008723734.1 CDS P423_18810 NC_022648.1 3837702 3838508 D member of the FNT family of formate and nitrite transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite transporter NirC 3837702..3838508 Escherichia coli JJ1886 17432579 YP_008723735.1 CDS cysG NC_022648.1 3838527 3839900 D multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; Derived by automated computational analysis using gene prediction method: Protein Homology.; siroheme synthase 3838527..3839900 Escherichia coli JJ1886 17432580 YP_008723736.1 CDS P423_18820 NC_022648.1 3840152 3840319 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3840152..3840319 Escherichia coli JJ1886 17432581 YP_008723737.1 CDS P423_18825 NC_022648.1 3840427 3841512 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3840427..3841512) Escherichia coli JJ1886 17432582 YP_008723738.1 CDS P423_18830 NC_022648.1 3841524 3842828 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3841524..3842828) Escherichia coli JJ1886 17432583 YP_008723739.1 CDS P423_18835 NC_022648.1 3842840 3843193 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3842840..3843193) Escherichia coli JJ1886 17432584 YP_008723740.1 CDS P423_18840 NC_022648.1 3843204 3844082 R phosphotriesterase homology protein; PhP; YhfV; member of a family of proteins related to phosphotriesterase (PTE); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase complement(3843204..3844082) Escherichia coli JJ1886 17432585 YP_008723741.1 CDS P423_18845 NC_022648.1 3844079 3845305 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mutase complement(3844079..3845305) Escherichia coli JJ1886 17432586 YP_008723742.1 CDS P423_18850 NC_022648.1 3845306 3846469 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3845306..3846469) Escherichia coli JJ1886 17432587 YP_008723743.1 CDS P423_18855 NC_022648.1 3846553 3846915 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3846553..3846915) Escherichia coli JJ1886 17432588 YP_008723744.1 CDS P423_18860 NC_022648.1 3846932 3847837 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3846932..3847837) Escherichia coli JJ1886 17432589 YP_008723745.1 CDS P423_18865 NC_022648.1 3847999 3849003 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophanyl-tRNA synthetase complement(3847999..3849003) Escherichia coli JJ1886 17432590 YP_008723746.1 CDS P423_18870 NC_022648.1 3848996 3849754 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycolate phosphatase complement(3848996..3849754) Escherichia coli JJ1886 17432591 YP_008723747.1 CDS P423_18875 NC_022648.1 3849747 3850424 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribulose-phosphate 3-epimerase complement(3849747..3850424) Escherichia coli JJ1886 17432592 YP_008723748.1 CDS P423_18880 NC_022648.1 3850442 3851278 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA adenine methylase complement(3850442..3851278) Escherichia coli JJ1886 17432593 YP_008723749.1 CDS P423_18885 NC_022648.1 3851385 3852671 R binds the septal ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein DamX complement(3851385..3852671) Escherichia coli JJ1886 17432594 YP_008723750.1 CDS aroB NC_022648.1 3852763 3853851 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-dehydroquinate synthase complement(3852763..3853851) Escherichia coli JJ1886 17432595 YP_008723751.1 CDS P423_18895 NC_022648.1 3853908 3854585 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; shikimate kinase complement(3853908..3854585) Escherichia coli JJ1886 17432596 YP_008723752.1 CDS hofQ NC_022648.1 3854830 3856068 R outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin HofQ complement(3854830..3856068) Escherichia coli JJ1886 17432597 YP_008723753.1 CDS P423_18905 NC_022648.1 3855980 3856384 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA utilization protein HofP complement(3855980..3856384) Escherichia coli JJ1886 17432598 YP_008723754.1 CDS P423_18910 NC_022648.1 3856374 3856814 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein HofO complement(3856374..3856814) Escherichia coli JJ1886 17432599 YP_008723755.1 CDS P423_18915 NC_022648.1 3856798 3857337 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein HofN complement(3856798..3857337) Escherichia coli JJ1886 17432600 YP_008723756.1 CDS P423_18920 NC_022648.1 3857337 3858116 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein HofM complement(3857337..3858116) Escherichia coli JJ1886 17432601 YP_008723757.1 CDS mrcA NC_022648.1 3858236 3860788 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 1a 3858236..3860788 Escherichia coli JJ1886 17432602 YP_008723758.1 CDS P423_18930 NC_022648.1 3860814 3860894 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3860814..3860894) Escherichia coli JJ1886 17432603 YP_008723759.1 CDS nudE NC_022648.1 3860954 3861514 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine nucleotide hydrolase complement(3860954..3861514) Escherichia coli JJ1886 17432604 YP_008723760.1 CDS P423_18940 NC_022648.1 3861834 3863969 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Intracellular growth attenuator protein igaA 3861834..3863969 Escherichia coli JJ1886 17432605 YP_008723761.1 CDS P423_18945 NC_022648.1 3864034 3864702 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotidase 3864034..3864702 Escherichia coli JJ1886 17432606 YP_008723762.1 CDS P423_18950 NC_022648.1 3864713 3865114 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated heat shock protein Hsp15 3864713..3865114 Escherichia coli JJ1886 17432607 YP_008723763.1 CDS hslO NC_022648.1 3865133 3866017 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Derived by automated computational analysis using gene prediction method: Protein Homology.; Hsp33 chaperonin 3865133..3866017 Escherichia coli JJ1886 17432608 YP_008723764.1 CDS P423_18960 NC_022648.1 3866140 3867348 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS609 complement(3866140..3867348) Escherichia coli JJ1886 17432609 YP_008723765.1 CDS P423_18965 NC_022648.1 3867651 3869375 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3867651..3869375) Escherichia coli JJ1886 17432610 YP_008723766.1 CDS P423_18970 NC_022648.1 3869753 3871375 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate carboxykinase 3869753..3871375 Escherichia coli JJ1886 17432611 YP_008723767.1 CDS envZ NC_022648.1 3871452 3872804 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; Derived by automated computational analysis using gene prediction method: Protein Homology.; osmolarity sensor protein complement(3871452..3872804) Escherichia coli JJ1886 17432612 YP_008723768.1 CDS ompR NC_022648.1 3872801 3873520 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3872801..3873520) Escherichia coli JJ1886 17432613 YP_008723769.1 CDS greB NC_022648.1 3873748 3874224 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription elongation factor GreB 3873748..3874224 Escherichia coli JJ1886 17432614 YP_008723770.1 CDS P423_18990 NC_022648.1 3874321 3876642 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription accessory protein 3874321..3876642 Escherichia coli JJ1886 17432615 YP_008723771.1 CDS feoA NC_022648.1 3877080 3877307 D Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3877080..3877307 Escherichia coli JJ1886 17432616 YP_008723772.1 CDS feoB NC_022648.1 3877324 3879645 D cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3877324..3879645 Escherichia coli JJ1886 17432617 YP_008723773.1 CDS P423_19005 NC_022648.1 3879656 3879892 D regulatory protein that controls transcription of feoABC genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3879656..3879892 Escherichia coli JJ1886 17432618 YP_008723774.1 CDS P423_19010 NC_022648.1 3880159 3880521 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 3880159..3880521 Escherichia coli JJ1886 17432619 YP_008723775.1 CDS P423_19015 NC_022648.1 3880550 3881320 R Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxylesterase BioH complement(3880550..3881320) Escherichia coli JJ1886 17432620 YP_008723776.1 CDS P423_19020 NC_022648.1 3881358 3882041 D required for utilization of DNA as the sole source of carbon and energy; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein GntX 3881358..3882041 Escherichia coli JJ1886 17432621 YP_008723777.1 CDS P423_19025 NC_022648.1 3882100 3882675 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe/S biogenesis protein NfuA 3882100..3882675 Escherichia coli JJ1886 17432622 YP_008723778.1 CDS P423_19030 NC_022648.1 3883039 3884355 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Gnt-II system L-idonate transporter IdnT 3883039..3884355 Escherichia coli JJ1886 17432623 YP_008723779.1 CDS malQ NC_022648.1 3884465 3886549 R amylomaltase; acts to release glucose from maltodextrins; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-alpha-glucanotransferase complement(3884465..3886549) Escherichia coli JJ1886 17432624 YP_008723780.1 CDS P423_19040 NC_022648.1 3886559 3888952 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen phosphorylase complement(3886559..3888952) Escherichia coli JJ1886 17432625 YP_008723781.1 CDS P423_19045 NC_022648.1 3889575 3892280 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3889575..3892280 Escherichia coli JJ1886 17432626 YP_008723782.1 CDS P423_19050 NC_022648.1 3892323 3892769 R catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA 3'-terminal-phosphate cyclase complement(3892323..3892769) Escherichia coli JJ1886 17432627 YP_008723783.1 CDS P423_19055 NC_022648.1 3892774 3893109 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 3892774..3893109 Escherichia coli JJ1886 17432628 YP_008723784.1 CDS P423_19060 NC_022648.1 3893091 3893849 R represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3893091..3893849) Escherichia coli JJ1886 17432629 YP_008723785.1 CDS P423_19065 NC_022648.1 3893866 3894696 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; Derived by automated computational analysis using gene prediction method: Protein Homology.; intramembrane serine protease GlpG complement(3893866..3894696) Escherichia coli JJ1886 17432630 YP_008723786.1 CDS glpE NC_022648.1 3894741 3895067 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate sulfurtransferase complement(3894741..3895067) Escherichia coli JJ1886 17432631 YP_008723787.1 CDS glpD NC_022648.1 3895257 3896762 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate dehydrogenase 3895257..3896762 Escherichia coli JJ1886 17432632 YP_008723788.1 CDS P423_19080 NC_022648.1 3896816 3897421 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3896816..3897421) Escherichia coli JJ1886 17432633 YP_008723789.1 CDS P423_19085 NC_022648.1 3897424 3898191 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3897424..3898191) Escherichia coli JJ1886 17432634 YP_008723790.1 CDS P423_19095 NC_022648.1 3898294 3899799 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein complement(3898294..3899799) Escherichia coli JJ1886 17432635 YP_008723791.1 CDS P423_19100 NC_022648.1 3899927 3902374 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen phosphorylase complement(3899927..3902374) Escherichia coli JJ1886 17432636 YP_008723792.1 CDS glgA NC_022648.1 3902393 3903826 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen synthase complement(3902393..3903826) Escherichia coli JJ1886 17432637 YP_008723793.1 CDS glgC NC_022648.1 3903826 3905121 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphate adenylyltransferase complement(3903826..3905121) Escherichia coli JJ1886 17432638 YP_008723794.1 CDS P423_19115 NC_022648.1 3905139 3907112 R catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen-debranching protein complement(3905139..3907112) Escherichia coli JJ1886 17432639 YP_008723795.1 CDS P423_19120 NC_022648.1 3907109 3909295 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen-branching protein complement(3907109..3909295) Escherichia coli JJ1886 17432640 YP_008723796.1 CDS P423_19125 NC_022648.1 3909568 3910671 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate-semialdehyde dehydrogenase complement(3909568..3910671) Escherichia coli JJ1886 17432641 YP_008723797.1 CDS P423_19130 NC_022648.1 3910863 3911456 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3910863..3911456 Escherichia coli JJ1886 17432642 YP_008723798.1 CDS P423_19135 NC_022648.1 3911502 3912797 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA processing protein DprA complement(3911502..3912797) Escherichia coli JJ1886 17432643 YP_008723799.1 CDS P423_19140 NC_022648.1 3912704 3914800 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATP-dependent DNA helicase RecQ complement(3912704..3914800) Escherichia coli JJ1886 17432644 YP_008723800.1 CDS P423_19145 NC_022648.1 3914941 3916281 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconate transporter complement(3914941..3916281) Escherichia coli JJ1886 17432645 YP_008723801.1 CDS gntK NC_022648.1 3916285 3916812 R thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconate kinase 1 complement(3916285..3916812) Escherichia coli JJ1886 17432646 YP_008723802.1 CDS P423_19155 NC_022648.1 3916951 3917946 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3916951..3917946) Escherichia coli JJ1886 17432647 YP_008723803.1 CDS P423_19160 NC_022648.1 3918039 3918734 R Derived by automated computational analysis using gene prediction method: Protein Homology.; quercetin 2,3-dioxygenase complement(3918039..3918734) Escherichia coli JJ1886 17432648 YP_008723804.1 CDS P423_19165 NC_022648.1 3918857 3919894 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(3918857..3919894) Escherichia coli JJ1886 17432649 YP_008723805.1 CDS P423_19170 NC_022648.1 3920228 3920716 D YhhY; regulated by the fur regulator; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase 3920228..3920716 Escherichia coli JJ1886 17432650 YP_008723806.1 CDS ggt NC_022648.1 3920777 3922510 R periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyltranspeptidase complement(3920777..3922510) Escherichia coli JJ1886 17432651 YP_008723807.1 CDS P423_19180 NC_022648.1 3922630 3923070 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3922630..3923070 Escherichia coli JJ1886 17432652 YP_008723808.1 CDS ugpQ NC_022648.1 3923057 3923800 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic glycerophosphodiester phosphodiesterase complement(3923057..3923800) Escherichia coli JJ1886 17432653 YP_008723809.1 CDS P423_19190 NC_022648.1 3923797 3924867 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter ATP-binding protein complement(3923797..3924867) Escherichia coli JJ1886 17432654 YP_008723810.1 CDS P423_19195 NC_022648.1 3924869 3925714 R with UgpABC is involved in uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate transporter membrane protein complement(3924869..3925714) Escherichia coli JJ1886 17432655 YP_008723811.1 CDS P423_19200 NC_022648.1 3925711 3926598 R with UgpEC is involved in the uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate transporter permease complement(3925711..3926598) Escherichia coli JJ1886 17432656 YP_008723812.1 CDS P423_19205 NC_022648.1 3926696 3928012 R with UgpACE is involved in the uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate ABC transporter substrate-binding protein complement(3926696..3928012) Escherichia coli JJ1886 17432657 YP_008723813.1 CDS livF NC_022648.1 3928409 3929110 R with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid ABC transporter ATP-binding protein complement(3928409..3929110) Escherichia coli JJ1886 17432659 YP_008723814.1 CDS livG NC_022648.1 3929124 3929891 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid ABC transporter ATP-binding protein complement(3929124..3929891) Escherichia coli JJ1886 17432660 YP_008723815.1 CDS livM NC_022648.1 3929888 3931165 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucine/isoleucine/valine transporter permease subunit complement(3929888..3931165) Escherichia coli JJ1886 17432661 YP_008723816.1 CDS P423_19230 NC_022648.1 3931162 3932088 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid transporter permease subunit LivH complement(3931162..3932088) Escherichia coli JJ1886 17432662 YP_008723817.1 CDS P423_19235 NC_022648.1 3932136 3933326 R with LivFGHM is involved in the high affinity leucine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(3932136..3933326) Escherichia coli JJ1886 17432663 YP_008723818.1 CDS P423_19240 NC_022648.1 3933668 3934051 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3933668..3934051 Escherichia coli JJ1886 17432664 YP_008723819.1 CDS P423_19245 NC_022648.1 3934048 3934575 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase complement(3934048..3934575) Escherichia coli JJ1886 17432665 YP_008723820.1 CDS P423_19250 NC_022648.1 3934582 3934848 R Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin-antitoxin system protein complement(3934582..3934848) Escherichia coli JJ1886 17432666 YP_008723821.1 CDS P423_19255 NC_022648.1 3934997 3936100 R with LivFGHM is involved in the high affinity leucine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(3934997..3936100) Escherichia coli JJ1886 17432667 YP_008723822.1 CDS P423_19260 NC_022648.1 3936371 3937225 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase factor sigma-32 complement(3936371..3937225) Escherichia coli JJ1886 17432668 YP_008723823.1 CDS ftsX NC_022648.1 3937470 3938528 R ABC transporter, membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsX complement(3937470..3938528) Escherichia coli JJ1886 17432669 YP_008723824.1 CDS tauB NC_022648.1 3938521 3939189 R Part of the ABC transporter complex tauABC involved in taurine import; Derived by automated computational analysis using gene prediction method: Protein Homology.; taurine ABC transporter ATP-binding protein complement(3938521..3939189) Escherichia coli JJ1886 17432670 YP_008723825.1 CDS P423_19275 NC_022648.1 3939192 3940688 R cell division protein; signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsY complement(3939192..3940688) Escherichia coli JJ1886 17432671 YP_008723826.1 CDS rsmD NC_022648.1 3940838 3941434 D catalyzes the methylation of 16S rRNA at position G966; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3940838..3941434 Escherichia coli JJ1886 17432672 YP_008723827.1 CDS P423_19285 NC_022648.1 3941424 3941693 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3941424..3941693 Escherichia coli JJ1886 17432673 YP_008723828.1 CDS P423_19290 NC_022648.1 3941696 3942055 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3941696..3942055) Escherichia coli JJ1886 17432674 YP_008723829.1 CDS P423_19295 NC_022648.1 3942196 3942822 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3942196..3942822 Escherichia coli JJ1886 17432675 YP_008723830.1 CDS zntA NC_022648.1 3942896 3945094 D P-type ATPase involved in the export of lead, cadmium, zinc and mercury; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc/cadmium/mercury/lead-transporting ATPase 3942896..3945094 Escherichia coli JJ1886 17432676 YP_008723831.1 CDS P423_19305 NC_022648.1 3945196 3945441 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfurtransferase complement(3945196..3945441) Escherichia coli JJ1886 17432677 YP_008723832.1 CDS P423_19310 NC_022648.1 3945651 3946316 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3945651..3946316 Escherichia coli JJ1886 17432678 YP_008723833.1 CDS P423_19315 NC_022648.1 3946389 3946946 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3946389..3946946 Escherichia coli JJ1886 17432679 YP_008723834.1 CDS P423_19320 NC_022648.1 3946950 3948200 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(3946950..3948200) Escherichia coli JJ1886 17432680 YP_008723835.1 CDS tqsA NC_022648.1 3948299 3949348 D transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; pheromone autoinducer 2 transporter 3948299..3949348 Escherichia coli JJ1886 17432681 YP_008723836.1 CDS P423_19330 NC_022648.1 3949403 3949990 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ACP synthase 3949403..3949990 Escherichia coli JJ1886 17432682 YP_008723837.1 CDS P423_19335 NC_022648.1 3950101 3951675 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel ABC transporter substrate-binding protein 3950101..3951675 Escherichia coli JJ1886 17432683 YP_008723838.1 CDS P423_19340 NC_022648.1 3951675 3952619 D with NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel ABC transporter permease 3951675..3952619 Escherichia coli JJ1886 17432684 YP_008723839.1 CDS nikC NC_022648.1 3952616 3953449 D with NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel ABC transporter permease 3952616..3953449 Escherichia coli JJ1886 17432685 YP_008723840.1 CDS P423_19355 NC_022648.1 3955022 3955423 D Inhibits transcription at high concentrations of nickel; Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel responsive regulator 3955022..3955423 Escherichia coli JJ1886 17432687 YP_008723841.1 CDS P423_19360 NC_022648.1 3955487 3955582 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3955487..3955582) Escherichia coli JJ1886 17432688 YP_008723842.1 CDS P423_19365 NC_022648.1 3955622 3956368 D Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 3955622..3956368 Escherichia coli JJ1886 17432689 YP_008723843.1 CDS P423_19370 NC_022648.1 3956393 3956866 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS suar transporter subunit IIA 3956393..3956866 Escherichia coli JJ1886 17432690 YP_008723844.1 CDS P423_19375 NC_022648.1 3956863 3957144 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIB 3956863..3957144 Escherichia coli JJ1886 17432691 YP_008723845.1 CDS gatC NC_022648.1 3957221 3958579 D with GatAB forms a phosphoenolpyruvate-dependent sugar phosphotransferase transporter for galactitol; subunit IIC forms the translocation channel and contains the substrate binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS galactitol transporter subunit IIC 3957221..3958579 Escherichia coli JJ1886 17432692 YP_008723846.1 CDS P423_19385 NC_022648.1 3958572 3960080 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate kinase 3958572..3960080 Escherichia coli JJ1886 17432693 YP_008723847.1 CDS P423_19390 NC_022648.1 3960070 3960339 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphocarrier protein HPr 3960070..3960339 Escherichia coli JJ1886 17432694 YP_008723848.1 CDS gatY NC_022648.1 3960371 3961222 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase 3960371..3961222 Escherichia coli JJ1886 17432695 YP_008723849.1 CDS P423_19400 NC_022648.1 3961331 3962455 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3961331..3962455) Escherichia coli JJ1886 17432696 YP_008723850.1 CDS P423_19405 NC_022648.1 3962455 3965190 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; multidrug ABC transporter ATP-binding protein complement(3962455..3965190) Escherichia coli JJ1886 17432697 YP_008723851.1 CDS P423_19410 NC_022648.1 3965187 3966254 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3965187..3966254) Escherichia coli JJ1886 17432698 YP_008723852.1 CDS P423_19415 NC_022648.1 3966977 3968041 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3966977..3968041 Escherichia coli JJ1886 17432699 YP_008723853.1 CDS P423_19420 NC_022648.1 3968128 3969321 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3968128..3969321) Escherichia coli JJ1886 17432700 YP_008723854.1 CDS P423_19425 NC_022648.1 3969553 3971052 D involved in the transport of inorganic phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter PitA 3969553..3971052 Escherichia coli JJ1886 17432701 YP_008723855.1 CDS P423_19430 NC_022648.1 3971123 3971458 R ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein B complement(3971123..3971458) Escherichia coli JJ1886 17432702 YP_008723856.1 CDS P423_19435 NC_022648.1 3971849 3972283 D involved in resistance to DNA-damaging agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein A 3971849..3972283 Escherichia coli JJ1886 17432703 YP_008723857.1 CDS P423_19440 NC_022648.1 3972600 3974069 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 3972600..3974069 Escherichia coli JJ1886 17432704 YP_008723858.1 CDS P423_19445 NC_022648.1 3974118 3974870 R predicted SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase complement(3974118..3974870) Escherichia coli JJ1886 17432705 YP_008723859.1 CDS P423_19450 NC_022648.1 3974878 3976920 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oligopeptidase A complement(3974878..3976920) Escherichia coli JJ1886 17432706 YP_008723860.1 CDS P423_19455 NC_022648.1 3977123 3977965 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3977123..3977965 Escherichia coli JJ1886 17432707 YP_008723861.1 CDS P423_19460 NC_022648.1 3978037 3979389 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione reductase 3978037..3979389 Escherichia coli JJ1886 17432708 YP_008723862.1 CDS P423_19465 NC_022648.1 3979443 3979526 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3979443..3979526) Escherichia coli JJ1886 17432709 YP_008723863.1 CDS P423_19470 NC_022648.1 3979861 3980286 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arsenate reductase 3979861..3980286 Escherichia coli JJ1886 17432710 YP_008723864.1 CDS P423_19480 NC_022648.1 3981472 3982038 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3981472..3982038 Escherichia coli JJ1886 17432711 YP_008723865.1 CDS P423_19485 NC_022648.1 3982191 3982721 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator 3982191..3982721 Escherichia coli JJ1886 17432712 YP_008723866.1 CDS P423_19490 NC_022648.1 3982778 3983806 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hemin transporter complement(3982778..3983806) Escherichia coli JJ1886 17432713 YP_008723867.1 CDS P423_19495 NC_022648.1 3983855 3985837 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ligand-gated channel protein complement(3983855..3985837) Escherichia coli JJ1886 17432714 YP_008723868.1 CDS P423_19500 NC_022648.1 3986521 3987435 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter substrate-binding protein 3986521..3987435 Escherichia coli JJ1886 17432715 YP_008723869.1 CDS P423_19505 NC_022648.1 3987455 3988792 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; Derived by automated computational analysis using gene prediction method: Protein Homology.; coproporphyrinogen III oxidase 3987455..3988792 Escherichia coli JJ1886 17432716 YP_008723870.1 CDS P423_19510 NC_022648.1 3988805 3989299 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ShuX 3988805..3989299 Escherichia coli JJ1886 17432717 YP_008723871.1 CDS P423_19515 NC_022648.1 3989299 3989922 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ShuY-like protein 3989299..3989922 Escherichia coli JJ1886 17432718 YP_008723872.1 CDS P423_19520 NC_022648.1 3990007 3990963 D with BtuD and BtuF transports vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; vtamin B12-transporter permease 3990007..3990963 Escherichia coli JJ1886 17432719 YP_008723873.1 CDS hmuV NC_022648.1 3990960 3991730 D with HmuTU is involved in the transport of hemin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hemin ABC transporter ATP-binding protein 3990960..3991730 Escherichia coli JJ1886 17432720 YP_008723874.1 CDS P423_19530 NC_022648.1 3991782 3992441 R inner membrane protein involved in cell density-dependent acid resistance; part of the acid fitness island (AFI) of E. coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium transporter ATPase complement(3991782..3992441) Escherichia coli JJ1886 17432721 YP_008723875.1 CDS hdeB NC_022648.1 3992493 3992831 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acid-resistance protein HdeB complement(3992493..3992831) Escherichia coli JJ1886 17432722 YP_008723876.1 CDS P423_19540 NC_022648.1 3992935 3993267 R inactive form; Derived by automated computational analysis using gene prediction method: Protein Homology.; acid-resistance protein HdeA complement(3992935..3993267) Escherichia coli JJ1886 17432723 YP_008723877.1 CDS P423_19545 NC_022648.1 3993522 3994094 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acid-resistance protein HdeD 3993522..3994094 Escherichia coli JJ1886 17432724 YP_008723878.1 CDS P423_19550 NC_022648.1 3994893 3995420 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator 3994893..3995420 Escherichia coli JJ1886 17432725 YP_008723879.1 CDS P423_19555 NC_022648.1 3995759 3996916 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 3995759..3996916 Escherichia coli JJ1886 17432726 YP_008723880.1 CDS P423_19560 NC_022648.1 3996941 4000054 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 3996941..4000054 Escherichia coli JJ1886 17432727 YP_008723881.1 CDS P423_19570 NC_022648.1 4001513 4002337 R regulates genes in response to acid and/or during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(4001513..4002337) Escherichia coli JJ1886 17432729 YP_008723882.1 CDS P423_19575 NC_022648.1 4002705 4004105 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate decarboxylase complement(4002705..4004105) Escherichia coli JJ1886 17432730 YP_008723883.1 CDS P423_19580 NC_022648.1 4004316 4005713 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C peroxidase complement(4004316..4005713) Escherichia coli JJ1886 17432731 YP_008723884.1 CDS treF NC_022648.1 4006118 4007767 D cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalase 4006118..4007767 Escherichia coli JJ1886 17432732 YP_008723885.1 CDS P423_19590 NC_022648.1 4007818 4008420 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator complement(4007818..4008420) Escherichia coli JJ1886 17432733 YP_008723886.1 CDS P423_19595 NC_022648.1 4008868 4009839 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 4008868..4009839 Escherichia coli JJ1886 17432734 YP_008723887.1 CDS P423_19600 NC_022648.1 4009887 4010900 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4009887..4010900 Escherichia coli JJ1886 17432735 YP_008723888.1 CDS P423_19605 NC_022648.1 4011293 4012615 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 4011293..4012615 Escherichia coli JJ1886 17432736 YP_008723889.1 CDS P423_19610 NC_022648.1 4012794 4014854 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4012794..4014854) Escherichia coli JJ1886 17432737 YP_008723890.1 CDS P423_19615 NC_022648.1 4014924 4015691 R in Escherichia coli this protein is involved in flagellar function; Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase complement(4014924..4015691) Escherichia coli JJ1886 17432738 YP_008723891.1 CDS P423_19620 NC_022648.1 4015839 4016852 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate-6-phosphate from 2-dehydro-3-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketodeoxygluconokinase 4015839..4016852 Escherichia coli JJ1886 17432739 YP_008723892.1 CDS P423_19625 NC_022648.1 4016948 4018444 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4016948..4018444) Escherichia coli JJ1886 17432740 YP_008723893.1 CDS P423_19630 NC_022648.1 4018664 4019950 R involved in the transport of C4-dicarboxylates across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(4018664..4019950) Escherichia coli JJ1886 17432741 YP_008723894.1 CDS P423_19635 NC_022648.1 4020133 4022121 R HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm formation regulator HmsP complement(4020133..4022121) Escherichia coli JJ1886 17432742 YP_008723895.1 CDS P423_19640 NC_022648.1 4022203 4025676 R cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; Derived by automated computational analysis using gene prediction method: Protein Homology.; cellulose synthase subunit BcsC complement(4022203..4025676) Escherichia coli JJ1886 17432743 YP_008723896.1 CDS P423_19645 NC_022648.1 4025658 4026764 R catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease III complement(4025658..4026764) Escherichia coli JJ1886 17432744 YP_008723897.1 CDS P423_19650 NC_022648.1 4026771 4029047 R binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP regulator CdgR complement(4026771..4029047) Escherichia coli JJ1886 17432745 YP_008723898.1 CDS bcsA NC_022648.1 4029121 4031739 R polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cellulose synthase catalytic subunit complement(4029121..4031739) Escherichia coli JJ1886 17432746 YP_008723899.1 CDS P423_19660 NC_022648.1 4031736 4032488 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein complement(4031736..4032488) Escherichia coli JJ1886 17432747 YP_008723900.1 CDS P423_19665 NC_022648.1 4032500 4032688 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4032500..4032688) Escherichia coli JJ1886 17432748 YP_008723901.1 CDS P423_19670 NC_022648.1 4032961 4034532 D required for cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cellulose biosynthesis protein BcsE 4032961..4034532 Escherichia coli JJ1886 17432749 YP_008723902.1 CDS P423_19675 NC_022648.1 4034529 4034720 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4034529..4034720 Escherichia coli JJ1886 17432750 YP_008723903.1 CDS P423_19680 NC_022648.1 4034717 4036396 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4034717..4036396 Escherichia coli JJ1886 17432751 YP_008723904.1 CDS P423_19685 NC_022648.1 4036482 4036589 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4036482..4036589) Escherichia coli JJ1886 17432752 YP_008723905.1 CDS P423_19690 NC_022648.1 4036965 4037072 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4036965..4037072) Escherichia coli JJ1886 17432753 YP_008723906.1 CDS P423_19695 NC_022648.1 4037448 4037555 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4037448..4037555) Escherichia coli JJ1886 17432754 YP_008723907.1 CDS P423_19700 NC_022648.1 4038031 4039302 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 4038031..4039302 Escherichia coli JJ1886 17432755 YP_008723908.1 CDS P423_19705 NC_022648.1 4039332 4040336 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein complement(4039332..4040336) Escherichia coli JJ1886 17432756 YP_008723909.1 CDS oppD NC_022648.1 4040333 4041316 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein complement(4040333..4041316) Escherichia coli JJ1886 17432757 YP_008723910.1 CDS P423_19715 NC_022648.1 4041327 4042229 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter complement(4041327..4042229) Escherichia coli JJ1886 17432758 YP_008723911.1 CDS P423_19720 NC_022648.1 4042239 4043258 R transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(4042239..4043258) Escherichia coli JJ1886 17432759 YP_008723912.1 CDS P423_19730 NC_022648.1 4043565 4045172 R DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein complement(4043565..4045172) Escherichia coli JJ1886 17432761 YP_008723913.1 CDS P423_19735 NC_022648.1 4045524 4045787 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4045524..4045787) Escherichia coli JJ1886 17432762 YP_008723914.1 CDS P423_19745 NC_022648.1 4046084 4047775 R catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoethanolamine transferase complement(4046084..4047775) Escherichia coli JJ1886 17432764 YP_008723915.1 CDS P423_19750 NC_022648.1 4048099 4049307 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4048099..4049307) Escherichia coli JJ1886 17432765 YP_008723916.1 CDS P423_19755 NC_022648.1 4049536 4050234 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4049536..4050234) Escherichia coli JJ1886 17432766 YP_008723917.1 CDS P423_19760 NC_022648.1 4050392 4050955 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-3-methyladenine glycosylase 4050392..4050955 Escherichia coli JJ1886 17432767 YP_008723918.1 CDS P423_19765 NC_022648.1 4050952 4051392 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase 4050952..4051392 Escherichia coli JJ1886 17432768 YP_008723919.1 CDS bisC NC_022648.1 4051361 4053694 R catalyzes the formation of biotin from biotin sulfoxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin sulfoxide reductase complement(4051361..4053694) Escherichia coli JJ1886 17432769 YP_008723920.1 CDS P423_19775 NC_022648.1 4053847 4054506 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein 4053847..4054506 Escherichia coli JJ1886 17432770 YP_008723921.1 CDS P423_19780 NC_022648.1 4054610 4055584 D catalyzes the formation of glycolate from glyoxylate and glycerate from hydroxypyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glyoxylate/hydroxypyruvate reductase B 4054610..4055584 Escherichia coli JJ1886 17432771 YP_008723922.1 CDS P423_19785 NC_022648.1 4055634 4056344 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4055634..4056344) Escherichia coli JJ1886 17432772 YP_008723923.1 CDS P423_19790 NC_022648.1 4056778 4057068 D Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 4056778..4057068 Escherichia coli JJ1886 17432773 YP_008723924.1 CDS P423_19795 NC_022648.1 4057349 4057561 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein 4057349..4057561 Escherichia coli JJ1886 17432774 YP_008723925.1 CDS P423_19800 NC_022648.1 4057749 4057901 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4057749..4057901) Escherichia coli JJ1886 17432775 YP_008723926.1 CDS glyS NC_022648.1 4058223 4060292 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycyl-tRNA synthetase complement(4058223..4060292) Escherichia coli JJ1886 17432776 YP_008723927.1 CDS P423_19810 NC_022648.1 4060302 4061213 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycyl-tRNA synthetase complement(4060302..4061213) Escherichia coli JJ1886 17432777 YP_008723928.1 CDS P423_19815 NC_022648.1 4061308 4061607 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4061308..4061607) Escherichia coli JJ1886 17432778 YP_008723929.1 CDS P423_19820 NC_022648.1 4061782 4062777 D involved in enterobacterial common antigen biosynthesis; catalyzes the addition of O-acetyl groups to the N-acetyl-D-glucosamine residues of the trisaccharide repeat units of the enterobacterial common antigen; Derived by automated computational analysis using gene prediction method: Protein Homology.; O-acetyltransferase 4061782..4062777 Escherichia coli JJ1886 17432779 YP_008723930.1 CDS P423_19825 NC_022648.1 4062819 4063256 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4062819..4063256) Escherichia coli JJ1886 17432780 YP_008723931.1 CDS P423_19830 NC_022648.1 4063302 4063643 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4063302..4063643) Escherichia coli JJ1886 17432781 YP_008723932.1 CDS P423_19835 NC_022648.1 4063812 4065266 R catalyzes the formation of D-xylulose-5-phosphate fro D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylulokinase complement(4063812..4065266) Escherichia coli JJ1886 17432782 YP_008723933.1 CDS P423_19840 NC_022648.1 4065337 4066659 R catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose isomerase complement(4065337..4066659) Escherichia coli JJ1886 17432783 YP_008723934.1 CDS xylF NC_022648.1 4067025 4068017 D periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose ABC transporter substrate-binding protein 4067025..4068017 Escherichia coli JJ1886 17432784 YP_008723935.1 CDS P423_19850 NC_022648.1 4068095 4069636 D with XylFH is part of the high affinity xylose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose ABC transporter ATP-binding protein 4068095..4069636 Escherichia coli JJ1886 17432785 YP_008723936.1 CDS P423_19855 NC_022648.1 4069614 4070795 D Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose ABC transporter permease 4069614..4070795 Escherichia coli JJ1886 17432786 YP_008723937.1 CDS P423_19860 NC_022648.1 4070873 4072051 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4070873..4072051 Escherichia coli JJ1886 17432787 YP_008723938.1 CDS P423_19865 NC_022648.1 4072159 4072983 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4072159..4072983) Escherichia coli JJ1886 17432788 YP_008723939.1 CDS malS NC_022648.1 4073303 4075333 D periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-amylase 4073303..4075333 Escherichia coli JJ1886 17432789 YP_008723940.1 CDS avtA NC_022648.1 4075511 4076764 D transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; valine--pyruvate aminotransferase 4075511..4076764 Escherichia coli JJ1886 17432790 YP_008723941.1 CDS P423_19880 NC_022648.1 4076803 4077276 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter complement(4076803..4077276) Escherichia coli JJ1886 17432791 YP_008723942.1 CDS P423_19885 NC_022648.1 4077378 4078226 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4077378..4078226) Escherichia coli JJ1886 17432792 YP_008723943.1 CDS P423_19890 NC_022648.1 4078427 4079425 D NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3-diketo-L-gulonate reductase 4078427..4079425 Escherichia coli JJ1886 17432793 YP_008723944.1 CDS P423_19895 NC_022648.1 4079437 4079901 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4079437..4079901 Escherichia coli JJ1886 17432794 YP_008723945.1 CDS P423_19900 NC_022648.1 4079924 4080844 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4079924..4080844 Escherichia coli JJ1886 17432795 YP_008723946.1 CDS P423_19905 NC_022648.1 4080958 4081425 D membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3-diketo-L-gulonate TRAP transporter permease 4080958..4081425 Escherichia coli JJ1886 17432796 YP_008723947.1 CDS P423_19910 NC_022648.1 4081428 4082705 D TRAP family transporter; with YiaMO is involved in the uptake of L-dehydroascorbate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydroascorbate transporter 4081428..4082705 Escherichia coli JJ1886 17432797 YP_008723948.1 CDS P423_19915 NC_022648.1 4082718 4083704 D involved in the transport of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter substrate-binding protein 4082718..4083704 Escherichia coli JJ1886 17432798 YP_008723949.1 CDS P423_19920 NC_022648.1 4083708 4085204 D catalyzes the formation of L-xylulose 5-phosphate and 3-dehydro-L-gulonate 6-phosphate from L-xylulose or 3-dehydro-L-gulonate, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-xylulose/3-keto-L-gulonate kinase 4083708..4085204 Escherichia coli JJ1886 17432799 YP_008723950.1 CDS ulaD NC_022648.1 4085201 4085863 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-keto-L-gulonate-6-phosphate decarboxylase 4085201..4085863 Escherichia coli JJ1886 17432800 YP_008723951.1 CDS P423_19930 NC_022648.1 4085856 4086716 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-xylulose 5-phosphate 3-epimerase 4085856..4086716 Escherichia coli JJ1886 17432801 YP_008723952.1 CDS araD NC_022648.1 4086710 4087405 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase 4086710..4087405 Escherichia coli JJ1886 17432802 YP_008723953.1 CDS P423_19940 NC_022648.1 4087437 4088252 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4087437..4088252) Escherichia coli JJ1886 17432803 YP_008723954.1 CDS P423_19945 NC_022648.1 4088478 4089878 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 4088478..4089878 Escherichia coli JJ1886 17432804 YP_008723955.1 CDS P423_19955 NC_022648.1 4092039 4093577 R catalyzes the oxidation of acetaldehyde, benzaldehyde, propionaldehyde and other aldehydes; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase complement(4092039..4093577) Escherichia coli JJ1886 17432806 YP_008723956.1 CDS P423_19960 NC_022648.1 4093685 4094980 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Fic family protein complement(4093685..4094980) Escherichia coli JJ1886 17432807 YP_008723957.1 CDS P423_19965 NC_022648.1 4095110 4096261 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(4095110..4096261) Escherichia coli JJ1886 17432808 YP_008723958.1 CDS P423_19970 NC_022648.1 4096452 4098296 R Derived by automated computational analysis using gene prediction method: Protein Homology.; translation elongation factor complement(4096452..4098296) Escherichia coli JJ1886 17432809 YP_008723959.1 CDS P423_19975 NC_022648.1 4098293 4099684 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; selenocysteine synthase complement(4098293..4099684) Escherichia coli JJ1886 17432810 YP_008723960.1 CDS P423_19980 NC_022648.1 4099782 4100390 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase complement(4099782..4100390) Escherichia coli JJ1886 17432811 YP_008723961.1 CDS P423_19985 NC_022648.1 4100461 4101597 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4100461..4101597) Escherichia coli JJ1886 17432812 YP_008723962.1 CDS P423_19990 NC_022648.1 4101600 4101962 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4101600..4101962) Escherichia coli JJ1886 17432813 YP_008723963.1 CDS P423_19995 NC_022648.1 4102499 4104412 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIC forms the translocation channel and contains the specific substrate-binding site; subunit IIA is phosphorylated and transfers the phosphoryl group to the IIB subunit; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannitol transporter subunit IIABC 4102499..4104412 Escherichia coli JJ1886 17432814 YP_008723964.1 CDS P423_20000 NC_022648.1 4104732 4105880 D Derived by automated computational analysis using gene prediction method: Protein Homology.; mannitol-1-phosphate 5-dehydrogenase 4104732..4105880 Escherichia coli JJ1886 17432815 YP_008723965.1 CDS mtlR NC_022648.1 4105880 4106467 D Acts as a repressor of the mtlAD operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannitol repressor protein 4105880..4106467 Escherichia coli JJ1886 17432816 YP_008723966.1 CDS P423_20010 NC_022648.1 4106478 4106687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4106478..4106687) Escherichia coli JJ1886 17432817 YP_008723967.1 CDS P423_20015 NC_022648.1 4106971 4107333 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4106971..4107333 Escherichia coli JJ1886 17432818 YP_008723968.1 CDS P423_20020 NC_022648.1 4107877 4108557 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4107877..4108557 Escherichia coli JJ1886 17432819 YP_008723969.1 CDS P423_20025 NC_022648.1 4108601 4112944 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; adhesin 4108601..4112944 Escherichia coli JJ1886 17432820 YP_008723970.1 CDS P423_20030 NC_022648.1 4113362 4115017 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate permease 4113362..4115017 Escherichia coli JJ1886 17432821 YP_008723971.1 CDS P423_20035 NC_022648.1 4115017 4115793 D represses the lctPRD operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4115017..4115793 Escherichia coli JJ1886 17432822 YP_008723972.1 CDS lldD NC_022648.1 4115790 4116980 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate dehydrogenase 4115790..4116980 Escherichia coli JJ1886 17432823 YP_008723973.1 CDS P423_20045 NC_022648.1 4117028 4117501 D member of the SPOUT superfamily of RNA methyltransferases; Derived by automated computational analysis using gene prediction method: Protein Homology.; rRNA methyltransferase 4117028..4117501 Escherichia coli JJ1886 17432824 YP_008723974.1 CDS cysE NC_022648.1 4117554 4118375 R catalyzes the O-acetylation of serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine acetyltransferase complement(4117554..4118375) Escherichia coli JJ1886 17432825 YP_008723975.1 CDS P423_20055 NC_022648.1 4118455 4119474 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(4118455..4119474) Escherichia coli JJ1886 17432826 YP_008723976.1 CDS P423_20060 NC_022648.1 4119474 4119941 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecB complement(4119474..4119941) Escherichia coli JJ1886 17432827 YP_008723977.1 CDS P423_20065 NC_022648.1 4120005 4120256 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin complement(4120005..4120256) Escherichia coli JJ1886 17432828 YP_008723978.1 CDS P423_20070 NC_022648.1 4120397 4120828 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4120397..4120828) Escherichia coli JJ1886 17432829 YP_008723979.1 CDS P423_20075 NC_022648.1 4121072 4122616 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglyceromutase 4121072..4122616 Escherichia coli JJ1886 17432830 YP_008723980.1 CDS P423_20080 NC_022648.1 4122626 4123909 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M37 4122626..4123909 Escherichia coli JJ1886 17432831 YP_008723981.1 CDS P423_20085 NC_022648.1 4123913 4124872 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4123913..4124872 Escherichia coli JJ1886 17432832 YP_008723982.1 CDS P423_20090 NC_022648.1 4124859 4125893 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(4124859..4125893) Escherichia coli JJ1886 17432833 YP_008723983.1 CDS tdh NC_022648.1 4126132 4127157 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-threonine 3-dehydrogenase complement(4126132..4127157) Escherichia coli JJ1886 17432834 YP_008723984.1 CDS P423_20100 NC_022648.1 4127167 4128363 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-amino-3-ketobutyrate CoA ligase complement(4127167..4128363) Escherichia coli JJ1886 17432835 YP_008723985.1 CDS rfaD NC_022648.1 4128577 4129509 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-L-glycero-D-mannoheptose-6-epimerase 4128577..4129509 Escherichia coli JJ1886 17432836 YP_008723986.1 CDS P423_20110 NC_022648.1 4129519 4130565 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-heptose:LPS heptosyl transferase 4129519..4130565 Escherichia coli JJ1886 17432837 YP_008723987.1 CDS P423_20115 NC_022648.1 4130569 4131528 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-heptose:LPS heptosyl transferase 4130569..4131528 Escherichia coli JJ1886 17432838 YP_008723988.1 CDS P423_20120 NC_022648.1 4131538 4132803 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ligase 4131538..4132803 Escherichia coli JJ1886 17432839 YP_008723989.1 CDS P423_20125 NC_022648.1 4132829 4133902 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipopolysaccharide 1,2-N-acetylglucosaminetransferase complement(4132829..4133902) Escherichia coli JJ1886 17432840 YP_008723990.1 CDS P423_20130 NC_022648.1 4133935 4134786 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core biosynthesis protein complement(4133935..4134786) Escherichia coli JJ1886 17432841 YP_008723991.1 CDS P423_20135 NC_022648.1 4134856 4135554 R catalyzes the phosphorylation of heptose(II) of the outer membrane lipopolysaccharide core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptose(II) kinase RfaY complement(4134856..4135554) Escherichia coli JJ1886 17432842 YP_008723992.1 CDS P423_20140 NC_022648.1 4135572 4136588 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide 1,3-galactosyltransferase complement(4135572..4136588) Escherichia coli JJ1886 17432843 YP_008723993.1 CDS P423_20145 NC_022648.1 4136628 4137647 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide 1,3-galactosyltransferase complement(4136628..4137647) Escherichia coli JJ1886 17432844 YP_008723994.1 CDS P423_20150 NC_022648.1 4137647 4138726 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(4137647..4138726) Escherichia coli JJ1886 17432845 YP_008723995.1 CDS P423_20155 NC_022648.1 4138770 4139705 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide biosynthesis protein complement(4138770..4139705) Escherichia coli JJ1886 17432846 YP_008723996.1 CDS P423_20160 NC_022648.1 4139742 4140539 R catalyzes the phosphorylation of heptose I in the lipopolysaccharide core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptose(I) kinase RfaP complement(4139742..4140539) Escherichia coli JJ1886 17432847 YP_008723997.1 CDS P423_20165 NC_022648.1 4140532 4141656 R catalyzes the addition of the first glucose residue to the LPS core; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosyltransferase complement(4140532..4141656) Escherichia coli JJ1886 17432848 YP_008723998.1 CDS P423_20170 NC_022648.1 4141653 4142711 R catalyzes the transfer of heptose(III) to heptose(II) in the lipopolysaccharide inner core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptosyltransferase RfaQ complement(4141653..4142711) Escherichia coli JJ1886 17432849 YP_008723999.1 CDS P423_20175 NC_022648.1 4143125 4144402 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-D-manno-octulosonic acid transferase 4143125..4144402 Escherichia coli JJ1886 17432850 YP_008724000.1 CDS coaD NC_022648.1 4144410 4144889 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantetheine adenylyltransferase 4144410..4144889 Escherichia coli JJ1886 17432851 YP_008724001.1 CDS P423_20185 NC_022648.1 4144928 4145737 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-hydroxymethyluracil DNA glycosylase complement(4144928..4145737) Escherichia coli JJ1886 17432852 YP_008724002.1 CDS rpmG NC_022648.1 4145835 4146002 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L33 complement(4145835..4146002) Escherichia coli JJ1886 17432853 YP_008724003.1 CDS rpmB NC_022648.1 4146023 4146259 R required for 70S ribosome assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L28 complement(4146023..4146259) Escherichia coli JJ1886 17432854 YP_008724004.1 CDS P423_20205 NC_022648.1 4146476 4147144 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4146476..4147144) Escherichia coli JJ1886 17432855 YP_008724005.1 CDS P423_20210 NC_022648.1 4147316 4148536 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantothenoylcysteine decarboxylase 4147316..4148536 Escherichia coli JJ1886 17432856 YP_008724006.1 CDS P423_20215 NC_022648.1 4148514 4148972 D catalyzes the formation of dUMP from dUTP; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyuridine 5'-triphosphate nucleotidohydrolase 4148514..4148972 Escherichia coli JJ1886 17432857 YP_008724007.1 CDS slmA NC_022648.1 4149079 4149675 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; division inhibitor protein 4149079..4149675 Escherichia coli JJ1886 17432858 YP_008724008.1 CDS pyrE NC_022648.1 4149712 4150353 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; orotate phosphoribosyltransferase complement(4149712..4150353) Escherichia coli JJ1886 17432859 YP_008724009.1 CDS rph NC_022648.1 4150419 4151135 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease PH complement(4150419..4151135) Escherichia coli JJ1886 17432860 YP_008724010.1 CDS P423_20235 NC_022648.1 4151262 4152125 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4151262..4152125 Escherichia coli JJ1886 17432861 YP_008724011.1 CDS P423_20240 NC_022648.1 4152377 4152994 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4152377..4152994 Escherichia coli JJ1886 17432862 YP_008724012.1 CDS ligB NC_022648.1 4152991 4154673 R this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent DNA ligase LigB complement(4152991..4154673) Escherichia coli JJ1886 17432863 YP_008724013.1 CDS gmk NC_022648.1 4154931 4155554 D Essential for recycling GMP and indirectly, cGMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanylate kinase 4154931..4155554 Escherichia coli JJ1886 17432864 YP_008724014.1 CDS rpoZ NC_022648.1 4155609 4155884 D Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit omega 4155609..4155884 Escherichia coli JJ1886 17432865 YP_008724015.1 CDS P423_20260 NC_022648.1 4155903 4158011 D Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4155903..4158011 Escherichia coli JJ1886 17432866 YP_008724016.1 CDS P423_20265 NC_022648.1 4158018 4158707 D specifically modifies tRNA at position G18; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase 4158018..4158707 Escherichia coli JJ1886 17432867 YP_008724017.1 CDS P423_20270 NC_022648.1 4158713 4160794 D catalyzes branch migration in Holliday junction intermediates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase RecG 4158713..4160794 Escherichia coli JJ1886 17432868 YP_008724018.1 CDS P423_20275 NC_022648.1 4160828 4162033 R is involved with the sodium-dependent uptake of glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium/glutamate symport carrier protein GltS complement(4160828..4162033) Escherichia coli JJ1886 17432869 YP_008724019.1 CDS P423_20280 NC_022648.1 4162313 4163704 D high-affinity transporter for xanthine; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine permease 4162313..4163704 Escherichia coli JJ1886 17432870 YP_008724020.1 CDS P423_20285 NC_022648.1 4163825 4165534 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4163825..4165534 Escherichia coli JJ1886 17432871 YP_008724021.1 CDS P423_20290 NC_022648.1 4165578 4166258 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4165578..4166258) Escherichia coli JJ1886 17432872 YP_008724022.1 CDS P423_20295 NC_022648.1 4166239 4167171 R catalyzes phosphorylation of fructose; cytosolic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructokinase complement(4166239..4167171) Escherichia coli JJ1886 17432873 YP_008724023.1 CDS P423_20300 NC_022648.1 4167219 4168079 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4167219..4168079) Escherichia coli JJ1886 17432874 YP_008724024.1 CDS kbaY NC_022648.1 4168160 4169011 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; tagatose-bisphosphate aldolase complement(4168160..4169011) Escherichia coli JJ1886 17432875 YP_008724025.1 CDS P423_20315 NC_022648.1 4170471 4170941 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; FrvA complement(4170471..4170941) Escherichia coli JJ1886 17432877 YP_008724026.1 CDS P423_20320 NC_022648.1 4170968 4172521 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LicR complement(4170968..4172521) Escherichia coli JJ1886 17432878 YP_008724027.1 CDS P423_20325 NC_022648.1 4172816 4175134 R catalyzes the transfer of alpha-xylosyl residue; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-glucosidase complement(4172816..4175134) Escherichia coli JJ1886 17432879 YP_008724028.1 CDS P423_20330 NC_022648.1 4175144 4176526 R may be involved in the transport of galactosides-pentoses-hexuronides; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(4175144..4176526) Escherichia coli JJ1886 17432880 YP_008724029.1 CDS P423_20340 NC_022648.1 4177011 4178003 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2-hydroxyacid dehydrogenase 4177011..4178003 Escherichia coli JJ1886 17432882 YP_008724030.1 CDS P423_20345 NC_022648.1 4178573 4179070 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4178573..4179070 Escherichia coli JJ1886 17432883 YP_008724031.1 CDS P423_20350 NC_022648.1 4179248 4180171 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4179248..4180171 Escherichia coli JJ1886 17432884 YP_008724032.1 CDS metQ NC_022648.1 4180175 4180993 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter substrate-binding protein complement(4180175..4180993) Escherichia coli JJ1886 17432885 YP_008724033.1 CDS P423_20360 NC_022648.1 4181215 4181508 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4181215..4181508 Escherichia coli JJ1886 17432886 YP_008724034.1 CDS nepI NC_022648.1 4181549 4182739 R experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside transporter complement(4181549..4182739) Escherichia coli JJ1886 17432887 YP_008724035.1 CDS P423_20370 NC_022648.1 4182967 4183326 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4182967..4183326 Escherichia coli JJ1886 17432888 YP_008724036.1 CDS P423_20375 NC_022648.1 4183310 4183633 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 4183310..4183633 Escherichia coli JJ1886 17432889 YP_008724037.1 CDS P423_20380 NC_022648.1 4183749 4184201 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4183749..4184201) Escherichia coli JJ1886 17432890 YP_008724038.1 CDS P423_20385 NC_022648.1 4184254 4185600 R involved in the transport or adenine; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine permease complement(4184254..4185600) Escherichia coli JJ1886 17432891 YP_008724039.1 CDS P423_20390 NC_022648.1 4185763 4187529 D catalyzes the formation of hypoxanthine from adenine; in E. coli this activity has been detected in mutant strains but not in wild type; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine deaminase 4185763..4187529 Escherichia coli JJ1886 17432892 YP_008724040.1 CDS uhpT NC_022648.1 4187576 4188967 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter complement(4187576..4188967) Escherichia coli JJ1886 17432893 YP_008724041.1 CDS P423_20400 NC_022648.1 4189105 4190424 R membrane protein regulates uhpT expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(4189105..4190424) Escherichia coli JJ1886 17432894 YP_008724042.1 CDS P423_20405 NC_022648.1 4190434 4191936 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(4190434..4191936) Escherichia coli JJ1886 17432895 YP_008724043.1 CDS P423_20410 NC_022648.1 4191936 4192526 R response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4191936..4192526) Escherichia coli JJ1886 17432896 YP_008724044.1 CDS P423_20415 NC_022648.1 4193010 4193498 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4193010..4193498 Escherichia coli JJ1886 17432897 YP_008724045.1 CDS P423_20420 NC_022648.1 4193739 4193870 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4193739..4193870 Escherichia coli JJ1886 17432898 YP_008724046.1 CDS P423_20425 NC_022648.1 4193936 4194226 R with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase complement(4193936..4194226) Escherichia coli JJ1886 17432899 YP_008724047.1 CDS P423_20430 NC_022648.1 4194230 4195918 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase complement(4194230..4195918) Escherichia coli JJ1886 17432900 YP_008724048.1 CDS emrD NC_022648.1 4196523 4197707 D multidrug efflux protein involved in adaptation to low energy shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein D 4196523..4197707 Escherichia coli JJ1886 17432901 YP_008724049.1 CDS P423_20440 NC_022648.1 4197715 4198212 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4197715..4198212) Escherichia coli JJ1886 17432902 YP_008724050.1 CDS P423_20445 NC_022648.1 4198209 4198571 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4198209..4198571) Escherichia coli JJ1886 17432903 YP_008724051.1 CDS P423_20450 NC_022648.1 4198561 4198908 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4198561..4198908) Escherichia coli JJ1886 17432904 YP_008724052.1 CDS P423_20460 NC_022648.1 4200459 4202174 R uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(4200459..4202174) Escherichia coli JJ1886 17432906 YP_008724053.1 CDS P423_20465 NC_022648.1 4202341 4203207 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 4202341..4203207 Escherichia coli JJ1886 17432907 YP_008724054.1 CDS P423_20470 NC_022648.1 4203297 4204958 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(4203297..4204958) Escherichia coli JJ1886 17432908 YP_008724055.1 CDS P423_20475 NC_022648.1 4205156 4205584 R 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock chaperone IbpB complement(4205156..4205584) Escherichia coli JJ1886 17432909 YP_008724056.1 CDS P423_20480 NC_022648.1 4205696 4206109 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein IbpA complement(4205696..4206109) Escherichia coli JJ1886 17432910 YP_008724057.1 CDS P423_20485 NC_022648.1 4206415 4206747 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4206415..4206747 Escherichia coli JJ1886 17432911 YP_008724058.1 CDS P423_20490 NC_022648.1 4206751 4207998 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4206751..4207998) Escherichia coli JJ1886 17432912 YP_008724059.1 CDS P423_20495 NC_022648.1 4208048 4209166 D FAD/NAD(P)-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 4208048..4209166 Escherichia coli JJ1886 17432913 YP_008724060.1 CDS P423_20500 NC_022648.1 4209127 4210419 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate transporter complement(4209127..4210419) Escherichia coli JJ1886 17432914 YP_008724061.1 CDS P423_20505 NC_022648.1 4210539 4211687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate dehydratase complement(4210539..4211687) Escherichia coli JJ1886 17432915 YP_008724062.1 CDS P423_20510 NC_022648.1 4211684 4212301 R catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase complement(4211684..4212301) Escherichia coli JJ1886 17432916 YP_008724063.1 CDS P423_20515 NC_022648.1 4212285 4213163 R catalyzes the formation of 2-dehydro-3-deoxy-D-galactonate 6-phosphate from 2-dehydro-3-deoxy-D-galactonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxo-3-deoxygalactonate kinase complement(4212285..4213163) Escherichia coli JJ1886 17432917 YP_008724064.1 CDS P423_20520 NC_022648.1 4213160 4213849 R Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate operon transcriptional repressor complement(4213160..4213849) Escherichia coli JJ1886 17432918 YP_008724065.1 CDS P423_20525 NC_022648.1 4214128 4214784 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4214128..4214784 Escherichia coli JJ1886 17432919 YP_008724066.1 CDS P423_20530 NC_022648.1 4214828 4215640 R YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphate phosphatase complement(4214828..4215640) Escherichia coli JJ1886 17432920 YP_008724067.1 CDS P423_20535 NC_022648.1 4215754 4216152 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4215754..4216152) Escherichia coli JJ1886 17432921 YP_008724068.1 CDS gyrB NC_022648.1 4216296 4218710 R negatively supercoils closed circular double-stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase subunit B complement(4216296..4218710) Escherichia coli JJ1886 17432922 YP_008724069.1 CDS recF NC_022648.1 4218739 4219812 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase F complement(4218739..4219812) Escherichia coli JJ1886 17432923 YP_008724070.1 CDS P423_20550 NC_022648.1 4219812 4220912 R binds the polymerase to DNA and acts as a sliding clamp; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit beta complement(4219812..4220912) Escherichia coli JJ1886 17432924 YP_008724071.1 CDS dnaA NC_022648.1 4220917 4222320 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself; Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosomal replication initiation protein complement(4220917..4222320) Escherichia coli JJ1886 17432925 YP_008724072.1 CDS rpmH NC_022648.1 4222927 4223067 D in Escherichia coli transcription of this gene is enhanced by polyamines; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L34 4222927..4223067 Escherichia coli JJ1886 17432926 YP_008724073.1 CDS rnpA NC_022648.1 4223084 4223443 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease P 4223084..4223443 Escherichia coli JJ1886 17432927 YP_008724074.1 CDS P423_20570 NC_022648.1 4223667 4225313 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein insertase 4223667..4225313 Escherichia coli JJ1886 17432928 YP_008724075.1 CDS trmE NC_022648.1 4225419 4226783 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA modification GTPase TrmE 4225419..4226783 Escherichia coli JJ1886 17432929 YP_008724076.1 CDS tnaA NC_022648.1 4227320 4228735 D tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; also has xysteine desulfhydrase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-cysteine desulfhydrase 4227320..4228735 Escherichia coli JJ1886 17432930 YP_008724077.1 CDS P423_20585 NC_022648.1 4228827 4230074 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan permease 4228827..4230074 Escherichia coli JJ1886 17432931 YP_008724078.1 CDS P423_20590 NC_022648.1 4230206 4231381 D Confers resistance to chloramphenicol; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 4230206..4231381 Escherichia coli JJ1886 17432932 YP_008724079.1 CDS P423_20595 NC_022648.1 4231356 4232315 D Involved in anaerobic NO protection; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4231356..4232315 Escherichia coli JJ1886 17432933 YP_008724080.1 CDS P423_20600 NC_022648.1 4232472 4233221 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4232472..4233221 Escherichia coli JJ1886 17432934 YP_008724081.1 CDS P423_20605 NC_022648.1 4233243 4233809 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4233243..4233809 Escherichia coli JJ1886 17432935 YP_008724082.1 CDS P423_20610 NC_022648.1 4233862 4235199 R involved in the transport or adenine; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine permease complement(4233862..4235199) Escherichia coli JJ1886 17432936 YP_008724083.1 CDS P423_20615 NC_022648.1 4235366 4236031 D YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconate phosphatase 4235366..4236031 Escherichia coli JJ1886 17432937 YP_008724084.1 CDS P423_20620 NC_022648.1 4236098 4236565 D might be involved in hypersensitivity to nitrofurzone; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4236098..4236565 Escherichia coli JJ1886 17432938 YP_008724085.1 CDS P423_20625 NC_022648.1 4236614 4237201 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4236614..4237201 Escherichia coli JJ1886 17432939 YP_008724086.1 CDS P423_20630 NC_022648.1 4237262 4237984 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconolactonase complement(4237262..4237984) Escherichia coli JJ1886 17432940 YP_008724087.1 CDS P423_20635 NC_022648.1 4237999 4239168 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4237999..4239168) Escherichia coli JJ1886 17432941 YP_008724088.1 CDS P423_20640 NC_022648.1 4239195 4240811 R Derived by automated computational analysis using gene prediction method: Protein Homology.; porin complement(4239195..4240811) Escherichia coli JJ1886 17432942 YP_008724089.1 CDS P423_20645 NC_022648.1 4240897 4242291 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phospho-beta-glucosidase complement(4240897..4242291) Escherichia coli JJ1886 17432943 YP_008724090.1 CDS P423_20650 NC_022648.1 4242310 4244121 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIA complement(4242310..4244121) Escherichia coli JJ1886 17432944 YP_008724091.1 CDS P423_20660 NC_022648.1 4245439 4246164 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4245439..4246164) Escherichia coli JJ1886 17432946 YP_008724092.1 CDS P423_20665 NC_022648.1 4246179 4246952 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphate ABC transporter ATP-binding protein complement(4246179..4246952) Escherichia coli JJ1886 17432947 YP_008724093.1 CDS pstA NC_022648.1 4247043 4247933 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter permease subunit PtsA complement(4247043..4247933) Escherichia coli JJ1886 17432948 YP_008724094.1 CDS pstC NC_022648.1 4247933 4248892 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter permease subunit PstC complement(4247933..4248892) Escherichia coli JJ1886 17432949 YP_008724095.1 CDS P423_20680 NC_022648.1 4248978 4250018 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate ABC transporter substrate-binding protein complement(4248978..4250018) Escherichia coli JJ1886 17432950 YP_008724096.1 CDS P423_20685 NC_022648.1 4250332 4252161 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosamine--fructose-6-phosphate aminotransferase complement(4250332..4252161) Escherichia coli JJ1886 17432951 YP_008724097.1 CDS glmU NC_022648.1 4252323 4253693 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4252323..4253693) Escherichia coli JJ1886 17432952 YP_008724098.1 CDS P423_20695 NC_022648.1 4253748 4253834 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4253748..4253834) Escherichia coli JJ1886 17432953 YP_008724099.1 CDS atpC NC_022648.1 4254047 4254466 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit epsilon complement(4254047..4254466) Escherichia coli JJ1886 17432954 YP_008724100.1 CDS P423_20705 NC_022648.1 4254487 4255869 R Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit beta complement(4254487..4255869) Escherichia coli JJ1886 17432955 YP_008724101.1 CDS P423_20710 NC_022648.1 4255896 4256759 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit gamma complement(4255896..4256759) Escherichia coli JJ1886 17432956 YP_008724102.1 CDS P423_20715 NC_022648.1 4256810 4258351 R Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit alpha complement(4256810..4258351) Escherichia coli JJ1886 17432957 YP_008724103.1 CDS P423_20720 NC_022648.1 4258364 4258897 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit delta complement(4258364..4258897) Escherichia coli JJ1886 17432958 YP_008724104.1 CDS P423_20725 NC_022648.1 4258912 4259382 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit B complement(4258912..4259382) Escherichia coli JJ1886 17432959 YP_008724105.1 CDS P423_20730 NC_022648.1 4259444 4259683 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit C complement(4259444..4259683) Escherichia coli JJ1886 17432960 YP_008724106.1 CDS P423_20735 NC_022648.1 4259730 4260545 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit A complement(4259730..4260545) Escherichia coli JJ1886 17432961 YP_008724107.1 CDS P423_20740 NC_022648.1 4260554 4260934 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit I complement(4260554..4260934) Escherichia coli JJ1886 17432962 YP_008724108.1 CDS gidB NC_022648.1 4261551 4262174 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase complement(4261551..4262174) Escherichia coli JJ1886 17432963 YP_008724109.1 CDS gidA NC_022648.1 4262238 4264127 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA uridine 5-carboxymethylaminomethyl modification protein complement(4262238..4264127) Escherichia coli JJ1886 17432964 YP_008724110.1 CDS P423_20755 NC_022648.1 4264506 4264949 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN-binding protein MioC complement(4264506..4264949) Escherichia coli JJ1886 17432965 YP_008724111.1 CDS P423_20760 NC_022648.1 4265039 4265497 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4265039..4265497) Escherichia coli JJ1886 17432966 YP_008724112.1 CDS P423_20765 NC_022648.1 4265649 4266641 D catalyzes the formation of asparagine from aspartate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; asparagine synthetase AsnA 4265649..4266641 Escherichia coli JJ1886 17432967 YP_008724113.1 CDS yieM NC_022648.1 4266646 4268097 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoheme IX farnesyltransferase complement(4266646..4268097) Escherichia coli JJ1886 17432968 YP_008724114.1 CDS P423_20775 NC_022648.1 4268091 4269608 R interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory ATPase RavA complement(4268091..4269608) Escherichia coli JJ1886 17432969 YP_008724115.1 CDS trkD NC_022648.1 4269810 4271678 D Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter Kup 4269810..4271678 Escherichia coli JJ1886 17432970 YP_008724116.1 CDS P423_20785 NC_022648.1 4271833 4272264 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose pyranase 4271833..4272264 Escherichia coli JJ1886 17432971 YP_008724117.1 CDS P423_20790 NC_022648.1 4272272 4273777 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose transporter ATP binding protein 4272272..4273777 Escherichia coli JJ1886 17432972 YP_008724118.1 CDS rbsC NC_022648.1 4273782 4274747 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose ABC transporter permease 4273782..4274747 Escherichia coli JJ1886 17432973 YP_008724119.1 CDS P423_20800 NC_022648.1 4274772 4275662 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose transporter subunit RbsB 4274772..4275662 Escherichia coli JJ1886 17432974 YP_008724120.1 CDS P423_20805 NC_022648.1 4275773 4276717 D catalyzes the formation of D-ribose 5-phosphate from ribose; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribokinase 4275773..4276717 Escherichia coli JJ1886 17432975 YP_008724121.1 CDS P423_20810 NC_022648.1 4276721 4277713 D binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4276721..4277713 Escherichia coli JJ1886 17432976 YP_008724122.1 CDS P423_20815 NC_022648.1 4277679 4279106 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(4277679..4279106) Escherichia coli JJ1886 17432977 YP_008724123.1 CDS P423_20820 NC_022648.1 4279129 4279821 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(4279129..4279821) Escherichia coli JJ1886 17432978 YP_008724124.1 CDS P423_20855 NC_022648.1 4285630 4286469 R Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4285630..4286469) Escherichia coli JJ1886 17432985 YP_008724125.1 CDS P423_20860 NC_022648.1 4286588 4286926 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4286588..4286926 Escherichia coli JJ1886 17432986 YP_008724126.1 CDS P423_20865 NC_022648.1 4286951 4288471 R among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease complement(4286951..4288471) Escherichia coli JJ1886 17432987 YP_008724127.1 CDS P423_20870 NC_022648.1 4289062 4290708 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 4289062..4290708 Escherichia coli JJ1886 17432988 YP_008724128.1 CDS ilvM NC_022648.1 4290705 4290968 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 4290705..4290968 Escherichia coli JJ1886 17432989 YP_008724129.1 CDS P423_20880 NC_022648.1 4290988 4291917 D Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid aminotransferase 4290988..4291917 Escherichia coli JJ1886 17432990 YP_008724130.1 CDS P423_20885 NC_022648.1 4291982 4293832 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxy-acid dehydratase 4291982..4293832 Escherichia coli JJ1886 17432991 YP_008724131.1 CDS P423_20890 NC_022648.1 4293832 4295379 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine dehydratase 4293832..4295379 Escherichia coli JJ1886 17432992 YP_008724132.1 CDS P423_20895 NC_022648.1 4295376 4296266 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4295376..4296266) Escherichia coli JJ1886 17432993 YP_008724133.1 CDS P423_20900 NC_022648.1 4296416 4297891 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketol-acid reductoisomerase 4296416..4297891 Escherichia coli JJ1886 17432994 YP_008724134.1 CDS P423_20905 NC_022648.1 4297937 4298218 R rotamase C; accelerates isomerization of the peptidyl prolyl bond; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(4297937..4298218) Escherichia coli JJ1886 17432995 YP_008724135.1 CDS P423_20910 NC_022648.1 4298305 4300326 D single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase Rep 4298305..4300326 Escherichia coli JJ1886 17432996 YP_008724136.1 CDS P423_20915 NC_022648.1 4300373 4301857 R catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanosine pentaphosphate phosphohydrolase complement(4300373..4301857) Escherichia coli JJ1886 17432997 YP_008724137.1 CDS P423_20920 NC_022648.1 4301993 4303258 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase complement(4301993..4303258) Escherichia coli JJ1886 17432998 YP_008724138.1 CDS trxA NC_022648.1 4303389 4303718 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin 4303389..4303718 Escherichia coli JJ1886 17432999 YP_008724139.1 CDS P423_20930 NC_022648.1 4303859 4303960 D Derived by automated computational analysis using gene prediction method: Protein Homology.; rho operon leader peptide 4303859..4303960 Escherichia coli JJ1886 17433000 YP_008724140.1 CDS rho NC_022648.1 4304045 4305304 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription termination factor Rho 4304045..4305304 Escherichia coli JJ1886 17433001 YP_008724141.1 CDS P423_20945 NC_022648.1 4305544 4306647 D catalyzes the formation of alpha-N-acetylglucosaminyl-pyrophosphoryl-undecaprenyl from alpha-N-acetylglucosaminyl 1-phosphate and the lipid carrier undecaprenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 4305544..4306647 Escherichia coli JJ1886 17433003 YP_008724142.1 CDS P423_20950 NC_022648.1 4306659 4307705 D Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide biosynthesis protein WzzE 4306659..4307705 Escherichia coli JJ1886 17433004 YP_008724143.1 CDS P423_20955 NC_022648.1 4307761 4308891 D Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine 2-epimerase 4307761..4308891 Escherichia coli JJ1886 17433005 YP_008724144.1 CDS wecC NC_022648.1 4308888 4310150 D catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetyl-D-mannosamine dehydrogenase 4308888..4310150 Escherichia coli JJ1886 17433006 YP_008724145.1 CDS P423_20965 NC_022648.1 4310150 4311217 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dTDP-glucose 4,6-dehydratase 4310150..4311217 Escherichia coli JJ1886 17433007 YP_008724146.1 CDS P423_20970 NC_022648.1 4311236 4312117 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphate thymidylyltransferase 4311236..4312117 Escherichia coli JJ1886 17433008 YP_008724147.1 CDS P423_20975 NC_022648.1 4312095 4312769 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TDP-fucosamine acetyltransferase 4312095..4312769 Escherichia coli JJ1886 17433009 YP_008724148.1 CDS P423_20980 NC_022648.1 4312774 4313904 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; TDP-4-oxo-6-deoxy-D-glucose aminotransferase 4312774..4313904 Escherichia coli JJ1886 17433010 YP_008724149.1 CDS P423_20985 NC_022648.1 4313906 4315156 D involved in the movement of lipid III across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 4313906..4315156 Escherichia coli JJ1886 17433011 YP_008724150.1 CDS P423_20990 NC_022648.1 4315153 4316232 D catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-alpha-L-fucosyltransferase 4315153..4316232 Escherichia coli JJ1886 17433012 YP_008724151.1 CDS P423_20995 NC_022648.1 4316229 4317581 D enterobacterial common antigen polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.; polymerase 4316229..4317581 Escherichia coli JJ1886 17433013 YP_008724152.1 CDS P423_21000 NC_022648.1 4317584 4318324 D Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetyl-D-mannosaminuronic acid transferase 4317584..4318324 Escherichia coli JJ1886 17433014 YP_008724153.1 CDS proY NC_022648.1 4318515 4319900 D cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 4318515..4319900 Escherichia coli JJ1886 17433015 YP_008724154.1 CDS P423_21030 NC_022648.1 4320586 4321821 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfatase 4320586..4321821 Escherichia coli JJ1886 17433020 YP_008724155.1 CDS P423_21035 NC_022648.1 4321912 4323567 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfatase complement(4321912..4323567) Escherichia coli JJ1886 17433021 YP_008724156.1 CDS P423_21040 NC_022648.1 4323661 4323786 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4323661..4323786 Escherichia coli JJ1886 17433022 YP_008724157.1 CDS P423_21045 NC_022648.1 4324197 4324787 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4324197..4324787) Escherichia coli JJ1886 17433023 YP_008724158.1 CDS P423_21050 NC_022648.1 4324837 4326033 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protoheme IX biogenesis protein complement(4324837..4326033) Escherichia coli JJ1886 17433024 YP_008724159.1 CDS P423_21055 NC_022648.1 4326036 4327235 R Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen III C-methyltransferase complement(4326036..4327235) Escherichia coli JJ1886 17433025 YP_008724160.1 CDS hemD NC_022648.1 4327257 4327997 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen-III synthase complement(4327257..4327997) Escherichia coli JJ1886 17433026 YP_008724161.1 CDS hemC NC_022648.1 4327994 4328935 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; porphobilinogen deaminase complement(4327994..4328935) Escherichia coli JJ1886 17433027 YP_008724162.1 CDS cyaA NC_022648.1 4329322 4331868 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylate cyclase 4329322..4331868 Escherichia coli JJ1886 17433028 YP_008724163.1 CDS cyaY NC_022648.1 4331908 4332228 R iron-dependent inhibitor of iron-sulfur cluster formation; iron-binding and oxidizing protein; defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; frataxin complement(4331908..4332228) Escherichia coli JJ1886 17433029 YP_008724164.1 CDS P423_21080 NC_022648.1 4332698 4332901 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4332698..4332901 Escherichia coli JJ1886 17433030 YP_008724165.1 CDS dapF NC_022648.1 4332938 4333762 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate epimerase 4332938..4333762 Escherichia coli JJ1886 17433031 YP_008724166.1 CDS P423_21090 NC_022648.1 4333759 4334466 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4333759..4334466 Escherichia coli JJ1886 17433032 YP_008724167.1 CDS xerC NC_022648.1 4334463 4335359 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase XerC 4334463..4335359 Escherichia coli JJ1886 17433033 YP_008724168.1 CDS P423_21100 NC_022648.1 4335359 4336075 D YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavin mononucleotide phosphatase 4335359..4336075 Escherichia coli JJ1886 17433034 YP_008724169.1 CDS uvrD NC_022648.1 4336159 4338321 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-dependent helicase 4336159..4338321 Escherichia coli JJ1886 17433035 YP_008724170.1 CDS P423_21110 NC_022648.1 4338376 4339278 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase complement(4338376..4339278) Escherichia coli JJ1886 17433036 YP_008724171.1 CDS P423_21115 NC_022648.1 4339361 4340125 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4339361..4340125) Escherichia coli JJ1886 17433037 YP_008724172.1 CDS P423_21120 NC_022648.1 4340346 4340480 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4340346..4340480) Escherichia coli JJ1886 17433038 YP_008724173.1 CDS P423_21125 NC_022648.1 4340495 4341445 D responsible for the influx of magnesium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium/nickel/cobalt transporter CorA 4340495..4341445 Escherichia coli JJ1886 17433039 YP_008724174.1 CDS P423_21130 NC_022648.1 4341488 4341868 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4341488..4341868) Escherichia coli JJ1886 17433040 YP_008724175.1 CDS P423_21135 NC_022648.1 4341883 4342299 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4341883..4342299) Escherichia coli JJ1886 17433041 YP_008724176.1 CDS P423_21140 NC_022648.1 4342358 4343248 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chloramphenical resistance permease RarD complement(4342358..4343248) Escherichia coli JJ1886 17433042 YP_008724177.1 CDS P423_21145 NC_022648.1 4343300 4343767 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4343300..4343767) Escherichia coli JJ1886 17433043 YP_008724178.1 CDS P423_21150 NC_022648.1 4343932 4344801 D catalyzes the hydrolysis of phosphatidylcholine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipase A 4343932..4344801 Escherichia coli JJ1886 17433044 YP_008724179.1 CDS P423_21155 NC_022648.1 4344920 4346755 D functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase RecQ 4344920..4346755 Escherichia coli JJ1886 17433045 YP_008724180.1 CDS P423_21160 NC_022648.1 4346820 4347440 D Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB 4346820..4347440 Escherichia coli JJ1886 17433046 YP_008724181.1 CDS P423_21165 NC_022648.1 4347478 4348338 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase complement(4347478..4348338) Escherichia coli JJ1886 17433047 YP_008724182.1 CDS rhtB NC_022648.1 4348497 4349117 R Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB complement(4348497..4349117) Escherichia coli JJ1886 17433048 YP_008724183.1 CDS P423_21175 NC_022648.1 4349228 4350250 D lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipase L2 4349228..4350250 Escherichia coli JJ1886 17433049 YP_008724184.1 CDS P423_21180 NC_022648.1 4350258 4351058 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 4350258..4351058 Escherichia coli JJ1886 17433050 YP_008724185.1 CDS P423_21185 NC_022648.1 4351134 4352033 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4351134..4352033 Escherichia coli JJ1886 17433051 YP_008724186.1 CDS P423_21190 NC_022648.1 4351921 4352874 R homocysteine-binding ; positive regulator of metA, metE and metH; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4351921..4352874) Escherichia coli JJ1886 17433052 YP_008724187.1 CDS P423_21195 NC_022648.1 4352992 4355253 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 4352992..4355253 Escherichia coli JJ1886 17433053 YP_008724188.1 CDS P423_21200 NC_022648.1 4355592 4356149 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 6-phospho 3-hexuloisomerase 4355592..4356149 Escherichia coli JJ1886 17433054 YP_008724189.1 CDS P423_21205 NC_022648.1 4356191 4357699 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIBC 4356191..4357699 Escherichia coli JJ1886 17433055 YP_008724190.1 CDS P423_21210 NC_022648.1 4357750 4359747 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase 4357750..4359747 Escherichia coli JJ1886 17433056 YP_008724191.1 CDS P423_21215 NC_022648.1 4359777 4360622 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar isomerase complement(4359777..4360622) Escherichia coli JJ1886 17433057 YP_008724192.1 CDS P423_21220 NC_022648.1 4360822 4361727 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LysR family transcriptional regulator complement(4360822..4361727) Escherichia coli JJ1886 17433058 YP_008724193.1 CDS P423_21225 NC_022648.1 4361805 4363028 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; permease complement(4361805..4363028) Escherichia coli JJ1886 17433059 YP_008724194.1 CDS P423_21230 NC_022648.1 4363054 4363443 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glutamyl-tRNA amidotransferase complement(4363054..4363443) Escherichia coli JJ1886 17433060 YP_008724195.1 CDS P423_21235 NC_022648.1 4363460 4364416 R Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamate kinase complement(4363460..4364416) Escherichia coli JJ1886 17433061 YP_008724196.1 CDS P423_21240 NC_022648.1 4364409 4365833 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4364409..4365833) Escherichia coli JJ1886 17433062 YP_008724197.1 CDS P423_21245 NC_022648.1 4365830 4367389 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4365830..4367389) Escherichia coli JJ1886 17433063 YP_008724198.1 CDS P423_21250 NC_022648.1 4367484 4367882 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4367484..4367882) Escherichia coli JJ1886 17433064 YP_008724199.1 CDS P423_21255 NC_022648.1 4367924 4368217 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4367924..4368217 Escherichia coli JJ1886 17433065 YP_008724200.1 CDS P423_21260 NC_022648.1 4368350 4369018 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cysteine hydrolase complement(4368350..4369018) Escherichia coli JJ1886 17433066 YP_008724201.1 CDS P423_21265 NC_022648.1 4369149 4369244 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4369149..4369244 Escherichia coli JJ1886 17433067 YP_008724202.1 CDS P423_21270 NC_022648.1 4369275 4370084 R Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymethylenebutenolidase complement(4369275..4370084) Escherichia coli JJ1886 17433068 YP_008724203.1 CDS P423_21275 NC_022648.1 4370346 4371110 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; uridine phosphorylase 4370346..4371110 Escherichia coli JJ1886 17433069 YP_008724204.1 CDS P423_21280 NC_022648.1 4371145 4372635 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; C4-dicarboxylate ABC transporter permease complement(4371145..4372635) Escherichia coli JJ1886 17433070 YP_008724205.1 CDS P423_21285 NC_022648.1 4372648 4373154 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; permease complement(4372648..4373154) Escherichia coli JJ1886 17433071 YP_008724206.1 CDS P423_21290 NC_022648.1 4373171 4374145 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter substrate-binding protein complement(4373171..4374145) Escherichia coli JJ1886 17433072 YP_008724207.1 CDS P423_21295 NC_022648.1 4374170 4374799 R catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase complement(4374170..4374799) Escherichia coli JJ1886 17433073 YP_008724208.1 CDS P423_21300 NC_022648.1 4374789 4375793 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acidic carbohydrate kinase complement(4374789..4375793) Escherichia coli JJ1886 17433074 YP_008724209.1 CDS P423_21305 NC_022648.1 4375817 4376584 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator complement(4375817..4376584) Escherichia coli JJ1886 17433075 YP_008724210.1 CDS P423_21310 NC_022648.1 4376801 4378228 D YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA recombination protein RmuC 4376801..4378228 Escherichia coli JJ1886 17433076 YP_008724211.1 CDS ubiE NC_022648.1 4378323 4379078 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone and menaquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinone/menaquinone biosynthesis methyltransferase 4378323..4379078 Escherichia coli JJ1886 17433077 YP_008724212.1 CDS P423_21320 NC_022648.1 4379092 4379697 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4379092..4379697 Escherichia coli JJ1886 17433078 YP_008724213.1 CDS ubiB NC_022648.1 4379694 4381334 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinone biosynthesis protein UbiB 4379694..4381334 Escherichia coli JJ1886 17433079 YP_008724214.1 CDS tatA NC_022648.1 4381413 4381682 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit TatA 4381413..4381682 Escherichia coli JJ1886 17433080 YP_008724215.1 CDS P423_21335 NC_022648.1 4381686 4382201 D mediates the export of protein precursors bearing twin-arginine signal peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 4381686..4382201 Escherichia coli JJ1886 17433081 YP_008724216.1 CDS P423_21340 NC_022648.1 4382204 4382980 D with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; twin-arginine protein translocation system subunit TatC 4382204..4382980 Escherichia coli JJ1886 17433082 YP_008724217.1 CDS P423_21345 NC_022648.1 4383022 4383804 D magnesium dependent; involved in quality control of mutated Tat exported substrates; not involved in the Sec-independent protein export system; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNase TatD 4383022..4383804 Escherichia coli JJ1886 17433083 YP_008724218.1 CDS rfaH NC_022648.1 4383801 4384289 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4383801..4384289) Escherichia coli JJ1886 17433084 YP_008724219.1 CDS P423_21355 NC_022648.1 4384456 4385949 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-polyprenyl-4-hydroxybenzoate decarboxylase 4384456..4385949 Escherichia coli JJ1886 17433085 YP_008724220.1 CDS fre NC_022648.1 4385995 4386696 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN reductase 4385995..4386696 Escherichia coli JJ1886 17433086 YP_008724221.1 CDS fadA NC_022648.1 4386877 4388040 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-CoA thiolase complement(4386877..4388040) Escherichia coli JJ1886 17433087 YP_008724222.1 CDS fadB NC_022648.1 4388050 4390239 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; multifunctional fatty acid oxidation complex subunit alpha complement(4388050..4390239) Escherichia coli JJ1886 17433088 YP_008724223.1 CDS P423_21375 NC_022648.1 4390429 4391760 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; Derived by automated computational analysis using gene prediction method: Protein Homology.; proline dipeptidase 4390429..4391760 Escherichia coli JJ1886 17433089 YP_008724224.1 CDS P423_21380 NC_022648.1 4391760 4392374 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4391760..4392374 Escherichia coli JJ1886 17433090 YP_008724225.1 CDS P423_21385 NC_022648.1 4392413 4393864 D Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 4392413..4393864 Escherichia coli JJ1886 17433091 YP_008724226.1 CDS hemG NC_022648.1 4393876 4394421 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoporphyrinogen oxidase 4393876..4394421 Escherichia coli JJ1886 17433092 YP_008724227.1 CDS P423_21415 NC_022648.1 4399919 4400446 R in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-guanine dinucleotide biosynthesis protein B complement(4399919..4400446) Escherichia coli JJ1886 17433097 YP_008724228.1 CDS mobA NC_022648.1 4400428 4401012 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4400428..4401012) Escherichia coli JJ1886 17433098 YP_008724229.1 CDS P423_21425 NC_022648.1 4401082 4401351 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4401082..4401351 Escherichia coli JJ1886 17433099 YP_008724230.1 CDS P423_21430 NC_022648.1 4401428 4402414 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein kinase 4401428..4402414 Escherichia coli JJ1886 17433100 YP_008724231.1 CDS P423_21435 NC_022648.1 4402431 4403057 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol-disulfide isomerase 4402431..4403057 Escherichia coli JJ1886 17433101 YP_008724232.1 CDS P423_21445 NC_022648.1 4404682 4405614 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase complement(4404682..4405614) Escherichia coli JJ1886 17433103 YP_008724233.1 CDS P423_21450 NC_022648.1 4405734 4405970 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4405734..4405970) Escherichia coli JJ1886 17433104 YP_008724234.1 CDS P423_21455 NC_022648.1 4405972 4408758 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase I 4405972..4408758 Escherichia coli JJ1886 17433105 YP_008724235.1 CDS P423_21460 NC_022648.1 4408977 4409126 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4408977..4409126) Escherichia coli JJ1886 17433106 YP_008724236.1 CDS P423_21465 NC_022648.1 4409140 4409787 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YsxC complement(4409140..4409787) Escherichia coli JJ1886 17433107 YP_008724237.1 CDS P423_21470 NC_022648.1 4410354 4410863 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase activator 4410354..4410863 Escherichia coli JJ1886 17433108 YP_008724238.1 CDS P423_21475 NC_022648.1 4411052 4412425 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; Derived by automated computational analysis using gene prediction method: Protein Homology.; coproporphyrinogen III oxidase 4411052..4412425 Escherichia coli JJ1886 17433109 YP_008724239.1 CDS glnG NC_022648.1 4412880 4414298 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulation protein NR(I) complement(4412880..4414298) Escherichia coli JJ1886 17433110 YP_008724240.1 CDS glnL NC_022648.1 4414301 4415350 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulation protein NR(II) complement(4414301..4415350) Escherichia coli JJ1886 17433111 YP_008724241.1 CDS glnA NC_022648.1 4415524 4416933 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine synthetase complement(4415524..4416933) Escherichia coli JJ1886 17433112 YP_008724242.1 CDS P423_21495 NC_022648.1 4417306 4419129 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein TypA 4417306..4419129 Escherichia coli JJ1886 17433113 YP_008724243.1 CDS P423_21500 NC_022648.1 4419237 4420025 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(4419237..4420025) Escherichia coli JJ1886 17433114 YP_008724244.1 CDS P423_21505 NC_022648.1 4420065 4420961 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase complement(4420065..4420961) Escherichia coli JJ1886 17433115 YP_008724245.1 CDS P423_21510 NC_022648.1 4421134 4422012 D catalyzes the formation of gamma hydroxybutyrate from succinate semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-dependent gamma-hydroxybutyrate dehydrogenase 4421134..4422012 Escherichia coli JJ1886 17433116 YP_008724246.1 CDS P423_21515 NC_022648.1 4422037 4422924 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldolase 4422037..4422924 Escherichia coli JJ1886 17433117 YP_008724247.1 CDS P423_21520 NC_022648.1 4422957 4423967 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; molecular chaperone GroES 4422957..4423967 Escherichia coli JJ1886 17433118 YP_008724248.1 CDS P423_21525 NC_022648.1 4424037 4425470 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MFS transporter 4424037..4425470 Escherichia coli JJ1886 17433119 YP_008724249.1 CDS P423_21530 NC_022648.1 4425569 4426918 D Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate transporter 4425569..4426918 Escherichia coli JJ1886 17433120 YP_008724250.1 CDS P423_21535 NC_022648.1 4426908 4427795 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4426908..4427795 Escherichia coli JJ1886 17433121 YP_008724251.1 CDS P423_21540 NC_022648.1 4427936 4428535 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-D-glucose-1-phosphatase 4427936..4428535 Escherichia coli JJ1886 17433122 YP_008724252.1 CDS P423_21545 NC_022648.1 4428529 4429401 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4428529..4429401 Escherichia coli JJ1886 17433123 YP_008724253.1 CDS P423_21550 NC_022648.1 4429398 4429835 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-tyrosyl-tRNA(Tyr) deacylase 4429398..4429835 Escherichia coli JJ1886 17433124 YP_008724254.1 CDS P423_21555 NC_022648.1 4429832 4430821 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4429832..4430821 Escherichia coli JJ1886 17433125 YP_008724255.1 CDS P423_21560 NC_022648.1 4430885 4431793 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipase complement(4430885..4431793) Escherichia coli JJ1886 17433126 YP_008724256.1 CDS P423_21565 NC_022648.1 4432022 4432333 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcription elongation factor GreB 4432022..4432333 Escherichia coli JJ1886 17433127 YP_008724257.1 CDS P423_21570 NC_022648.1 4432334 4432624 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Cro/Cl family transcriptional regulator 4432334..4432624 Escherichia coli JJ1886 17433128 YP_008724258.1 CDS P423_21575 NC_022648.1 4432709 4432921 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4432709..4432921 Escherichia coli JJ1886 17433129 YP_008724259.1 CDS P423_21580 NC_022648.1 4433658 4433876 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4433658..4433876 Escherichia coli JJ1886 17433130 YP_008724260.1 CDS P423_21585 NC_022648.1 4434061 4434801 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4434061..4434801) Escherichia coli JJ1886 17433131 YP_008724261.1 CDS P423_21590 NC_022648.1 4434826 4435674 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4434826..4435674) Escherichia coli JJ1886 17433132 YP_008724262.1 CDS P423_21595 NC_022648.1 4435988 4436206 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4435988..4436206 Escherichia coli JJ1886 17433133 YP_008724263.1 CDS P423_21600 NC_022648.1 4436388 4437317 R required for the formation of active formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase accessory protein FdhE complement(4436388..4437317) Escherichia coli JJ1886 17433134 YP_008724264.1 CDS P423_21605 NC_022648.1 4437314 4437949 R cytochrome b556(FDO) component; heme containing; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit gamma complement(4437314..4437949) Escherichia coli JJ1886 17433135 YP_008724265.1 CDS P423_21610 NC_022648.1 4437946 4438848 R beta subunit; involved in the use of formate as an electron donor during aerobic respiration; acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit); Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit beta complement(4437946..4438848) Escherichia coli JJ1886 17433136 YP_008724266.1 CDS P423_21615 NC_022648.1 4438861 4441275 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; formate dehydrogenase subunit alpha complement(4438861..4441275) Escherichia coli JJ1886 17433137 YP_008724267.1 CDS P423_21620 NC_022648.1 4441324 4441911 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfate ABC transporter substrate-binding protein complement(4441324..4441911) Escherichia coli JJ1886 17433138 YP_008724268.1 CDS P423_21625 NC_022648.1 4442105 4442938 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase accessory protein 4442105..4442938 Escherichia coli JJ1886 17433139 YP_008724269.1 CDS P423_21630 NC_022648.1 4443026 4443580 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4443026..4443580 Escherichia coli JJ1886 17433140 YP_008724270.1 CDS P423_21635 NC_022648.1 4443934 4445328 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glycoporin 4443934..4445328 Escherichia coli JJ1886 17433141 YP_008724271.1 CDS P423_21640 NC_022648.1 4445369 4445683 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-rhamnose mutarotase complement(4445369..4445683) Escherichia coli JJ1886 17433142 YP_008724272.1 CDS P423_21645 NC_022648.1 4445693 4446517 R Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnulose-1-phosphate aldolase complement(4445693..4446517) Escherichia coli JJ1886 17433143 YP_008724273.1 CDS P423_21650 NC_022648.1 4446784 4448043 R catalyzes the formation of L-rhamnulose from L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnose isomerase complement(4446784..4448043) Escherichia coli JJ1886 17433144 YP_008724274.1 CDS rhaB NC_022648.1 4448040 4449509 R catalyzes the ATP-dependent phosphorylation of rhamnulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnulokinase complement(4448040..4449509) Escherichia coli JJ1886 17433145 YP_008724275.1 CDS P423_21660 NC_022648.1 4449588 4449737 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4449588..4449737 Escherichia coli JJ1886 17433146 YP_008724276.1 CDS P423_21665 NC_022648.1 4449797 4450633 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 4449797..4450633 Escherichia coli JJ1886 17433147 YP_008724277.1 CDS P423_21670 NC_022648.1 4450617 4451555 D activates the expression of rhaRS in response to L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4450617..4451555 Escherichia coli JJ1886 17433148 YP_008724278.1 CDS P423_21675 NC_022648.1 4451552 4452586 R transports L-rhamnose and L-lyxose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar:proton symporter complement(4451552..4452586) Escherichia coli JJ1886 17433149 YP_008724279.1 CDS P423_21680 NC_022648.1 4452871 4453491 D SodA; manganese binding; only present under aerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase 4452871..4453491 Escherichia coli JJ1886 17433150 YP_008724280.1 CDS P423_21685 NC_022648.1 4453520 4453648 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4453520..4453648) Escherichia coli JJ1886 17433151 YP_008724281.1 CDS P423_21690 NC_022648.1 4453751 4454734 D transports degraded pectin products into the bacterial cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxygluconate permease 4453751..4454734 Escherichia coli JJ1886 17433152 YP_008724282.1 CDS P423_21695 NC_022648.1 4454883 4455557 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-N-hydroxylaminopurine resistance protein 4454883..4455557 Escherichia coli JJ1886 17433153 YP_008724283.1 CDS cpxA NC_022648.1 4455728 4457101 R part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase complement(4455728..4457101) Escherichia coli JJ1886 17433154 YP_008724284.1 CDS P423_21705 NC_022648.1 4457098 4457796 R response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4457098..4457796) Escherichia coli JJ1886 17433155 YP_008724285.1 CDS cpxP NC_022648.1 4457943 4458446 D repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; repressor CpxP 4457943..4458446 Escherichia coli JJ1886 17433156 YP_008724286.1 CDS fieF NC_022648.1 4458595 4459497 D member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 4458595..4459497 Escherichia coli JJ1886 17433157 YP_008724287.1 CDS P423_21720 NC_022648.1 4459678 4460640 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphofructokinase 4459678..4460640 Escherichia coli JJ1886 17433158 YP_008724288.1 CDS P423_21730 NC_022648.1 4460960 4461949 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate transporter subunit 4460960..4461949 Escherichia coli JJ1886 17433160 YP_008724289.1 CDS P423_21735 NC_022648.1 4462056 4462811 D Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-diacylglycerol pyrophosphatase 4462056..4462811 Escherichia coli JJ1886 17433161 YP_008724290.1 CDS P423_21740 NC_022648.1 4462866 4463633 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; triosephosphate isomerase complement(4462866..4463633) Escherichia coli JJ1886 17433162 YP_008724291.1 CDS P423_21745 NC_022648.1 4463741 4464340 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4463741..4464340) Escherichia coli JJ1886 17433163 YP_008724292.1 CDS P423_21750 NC_022648.1 4464441 4464881 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4464441..4464881 Escherichia coli JJ1886 17433164 YP_008724293.1 CDS P423_21755 NC_022648.1 4465093 4465392 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4465093..4465392 Escherichia coli JJ1886 17433165 YP_008724294.1 CDS P423_21760 NC_022648.1 4465419 4465847 D with UspC and Usp E is involved in resistance to UV radiation; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein D 4465419..4465847 Escherichia coli JJ1886 17433166 YP_008724295.1 CDS P423_21765 NC_022648.1 4465852 4466598 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin-NADP reductase complement(4465852..4466598) Escherichia coli JJ1886 17433167 YP_008724296.1 CDS P423_21770 NC_022648.1 4466695 4467705 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose 1,6-bisphosphatase complement(4466695..4467705) Escherichia coli JJ1886 17433168 YP_008724297.1 CDS glpK NC_022648.1 4467876 4469384 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol kinase complement(4467876..4469384) Escherichia coli JJ1886 17433169 YP_008724298.1 CDS P423_21780 NC_022648.1 4469407 4470252 R involved in the transport of glycerol into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol uptake facilitator GlpF complement(4469407..4470252) Escherichia coli JJ1886 17433170 YP_008724299.1 CDS P423_21785 NC_022648.1 4470677 4470922 D interacts with FisZ and is necessary for Z-ring formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; septal ring assembly protein ZapB 4470677..4470922 Escherichia coli JJ1886 17433171 YP_008724300.1 CDS P423_21790 NC_022648.1 4471007 4471492 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease activity regulator protein RraA complement(4471007..4471492) Escherichia coli JJ1886 17433172 YP_008724301.1 CDS P423_21795 NC_022648.1 4471585 4472511 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1,4-dihydroxy-2-naphthoate prenyltransferase complement(4471585..4472511) Escherichia coli JJ1886 17433173 YP_008724302.1 CDS hslU NC_022648.1 4472578 4473909 R heat shock protein involved in degradation of misfolded proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease complement(4472578..4473909) Escherichia coli JJ1886 17433174 YP_008724303.1 CDS P423_21805 NC_022648.1 4473919 4474449 R heat shock protein involved in degradation of misfolded proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease complement(4473919..4474449) Escherichia coli JJ1886 17433175 YP_008724304.1 CDS P423_21810 NC_022648.1 4474542 4475501 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsN complement(4474542..4475501) Escherichia coli JJ1886 17433176 YP_008724305.1 CDS P423_21815 NC_022648.1 4475593 4476618 R negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4475593..4476618) Escherichia coli JJ1886 17433177 YP_008724306.1 CDS P423_21820 NC_022648.1 4476774 4478972 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosome assembly protein PriA complement(4476774..4478972) Escherichia coli JJ1886 17433178 YP_008724307.1 CDS rpmE NC_022648.1 4479175 4479387 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L31 4479175..4479387 Escherichia coli JJ1886 17433179 YP_008724308.1 CDS P423_21830 NC_022648.1 4479448 4480056 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4479448..4480056) Escherichia coli JJ1886 17433180 YP_008724309.1 CDS P423_21835 NC_022648.1 4480116 4480433 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4480116..4480433) Escherichia coli JJ1886 17433181 YP_008724310.1 CDS P423_21840 NC_022648.1 4480710 4481870 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cystathionine gamma-synthase 4480710..4481870 Escherichia coli JJ1886 17433182 YP_008724311.1 CDS metL NC_022648.1 4481873 4484305 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aspartate kinase II/homoserine dehydrogenase II 4481873..4484305 Escherichia coli JJ1886 17433183 YP_008724312.1 CDS P423_21850 NC_022648.1 4484269 4485399 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4484269..4485399) Escherichia coli JJ1886 17433184 YP_008724313.1 CDS P423_21855 NC_022648.1 4485532 4487085 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 5'-nucleotidase 4485532..4487085 Escherichia coli JJ1886 17433185 YP_008724314.1 CDS P423_21860 NC_022648.1 4487302 4487391 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4487302..4487391) Escherichia coli JJ1886 17433186 YP_008724315.1 CDS metF NC_022648.1 4487467 4488357 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5,10-methylenetetrahydrofolate reductase 4487467..4488357 Escherichia coli JJ1886 17433187 YP_008724316.1 CDS P423_21870 NC_022648.1 4488686 4490866 D has catalase and peroxidase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; catalase/hydroperoxidase HPI(I) 4488686..4490866 Escherichia coli JJ1886 17433188 YP_008724317.1 CDS P423_21875 NC_022648.1 4490960 4491865 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 4490960..4491865 Escherichia coli JJ1886 17433189 YP_008724318.1 CDS P423_21880 NC_022648.1 4491892 4492509 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4491892..4492509) Escherichia coli JJ1886 17433190 YP_008724319.1 CDS P423_21885 NC_022648.1 4492622 4492816 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4492622..4492816) Escherichia coli JJ1886 17433191 YP_008724320.1 CDS gldA NC_022648.1 4492785 4493888 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol dehydrogenase complement(4492785..4493888) Escherichia coli JJ1886 17433192 YP_008724321.1 CDS P423_21895 NC_022648.1 4493899 4494561 R similar to transaldolase from Escherichia coli; many organisms have multiple copies; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(4493899..4494561) Escherichia coli JJ1886 17433193 YP_008724322.1 CDS P423_21900 NC_022648.1 4494573 4497074 R Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein HPr; HPr transfers the phosphoryl group to subunit A; subunit IIA transfers a phosphoryl group to subunit IIB; subunit IIB transfers the phosphoryl group to the substrate; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIA complement(4494573..4497074) Escherichia coli JJ1886 17433194 YP_008724323.1 CDS P423_21905 NC_022648.1 4497383 4498462 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIC 4497383..4498462 Escherichia coli JJ1886 17433195 YP_008724324.1 CDS P423_21910 NC_022648.1 4498477 4498797 D FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB 4498477..4498797 Escherichia coli JJ1886 17433196 YP_008724325.1 CDS pflD NC_022648.1 4498848 4501145 D involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate acetyltransferase 4498848..4501145 Escherichia coli JJ1886 17433197 YP_008724326.1 CDS P423_21920 NC_022648.1 4501111 4501989 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate lyase II activase 4501111..4501989 Escherichia coli JJ1886 17433198 YP_008724327.1 CDS P423_21925 NC_022648.1 4501991 4502332 D FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB 4501991..4502332 Escherichia coli JJ1886 17433199 YP_008724328.1 CDS P423_21930 NC_022648.1 4502319 4503170 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(4502319..4503170) Escherichia coli JJ1886 17433200 YP_008724329.1 CDS P423_21935 NC_022648.1 4503396 4505129 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4503396..4505129) Escherichia coli JJ1886 17433201 YP_008724330.1 CDS P423_21940 NC_022648.1 4505312 4507963 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate carboxylase complement(4505312..4507963) Escherichia coli JJ1886 17433202 YP_008724331.1 CDS P423_21945 NC_022648.1 4508265 4509416 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylornithine deacetylase complement(4508265..4509416) Escherichia coli JJ1886 17433203 YP_008724332.1 CDS P423_21950 NC_022648.1 4509570 4510574 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-gamma-glutamyl-phosphate reductase 4509570..4510574 Escherichia coli JJ1886 17433204 YP_008724333.1 CDS P423_21955 NC_022648.1 4510585 4511358 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylglutamate kinase 4510585..4511358 Escherichia coli JJ1886 17433205 YP_008724334.1 CDS P423_21960 NC_022648.1 4511419 4512792 D catalyzes the formation of arginine from (N-L-arginino)succinate; Derived by automated computational analysis using gene prediction method: Protein Homology.; argininosuccinate lyase 4511419..4512792 Escherichia coli JJ1886 17433206 YP_008724335.1 CDS P423_21965 NC_022648.1 4513059 4513976 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4513059..4513976 Escherichia coli JJ1886 17433207 YP_008724336.1 CDS P423_21970 NC_022648.1 4513959 4515359 R catalyzes the conversion of NADPH to NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; soluble pyridine nucleotide transhydrogenase complement(4513959..4515359) Escherichia coli JJ1886 17433208 YP_008724337.1 CDS P423_21975 NC_022648.1 4515689 4516855 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M20 4515689..4516855 Escherichia coli JJ1886 17433209 YP_008724338.1 CDS P423_21980 NC_022648.1 4516898 4518214 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 4516898..4518214 Escherichia coli JJ1886 17433210 YP_008724339.1 CDS P423_21985 NC_022648.1 4518264 4518968 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4518264..4518968 Escherichia coli JJ1886 17433211 YP_008724340.1 CDS P423_21990 NC_022648.1 4518968 4519327 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4518968..4519327 Escherichia coli JJ1886 17433212 YP_008724341.1 CDS P423_21995 NC_022648.1 4519367 4520467 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (uracil-5-)-methyltransferase complement(4519367..4520467) Escherichia coli JJ1886 17433213 YP_008724342.1 CDS btuB NC_022648.1 4520836 4522680 D involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12/cobalamin outer membrane transporter 4520836..4522680 Escherichia coli JJ1886 17433214 YP_008724343.1 CDS P423_22005 NC_022648.1 4522694 4523482 D converts L-glutamate to D-glutamate, a component of peptidoglycan; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glutamate racemase 4522694..4523482 Escherichia coli JJ1886 17433215 YP_008724344.1 CDS murB NC_022648.1 4529096 4530124 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylenolpyruvoylglucosamine reductase 4529096..4530124 Escherichia coli JJ1886 17433221 YP_008724345.1 CDS P423_22040 NC_022648.1 4530121 4531086 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 4530121..4531086 Escherichia coli JJ1886 17433222 YP_008724346.1 CDS P423_22045 NC_022648.1 4531115 4532065 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pantothenate kinase complement(4531115..4532065) Escherichia coli JJ1886 17433223 YP_008724347.1 CDS tuf NC_022648.1 4532983 4534167 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; elongation factor Tu 4532983..4534167 Escherichia coli JJ1886 17433228 YP_008724348.1 CDS secE NC_022648.1 4534397 4534780 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecE 4534397..4534780 Escherichia coli JJ1886 17433229 YP_008724349.1 CDS nusG NC_022648.1 4534782 4535327 D Modulates Rho-dependent transcription termination; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antitermination protein NusG 4534782..4535327 Escherichia coli JJ1886 17433230 YP_008724350.1 CDS P423_22085 NC_022648.1 4535486 4535914 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L11 4535486..4535914 Escherichia coli JJ1886 17433231 YP_008724351.1 CDS P423_22090 NC_022648.1 4535918 4536622 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L1 4535918..4536622 Escherichia coli JJ1886 17433232 YP_008724352.1 CDS rplJ NC_022648.1 4536914 4537411 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L10 4536914..4537411 Escherichia coli JJ1886 17433233 YP_008724353.1 CDS P423_22100 NC_022648.1 4537478 4537843 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L7/L12 4537478..4537843 Escherichia coli JJ1886 17433234 YP_008724354.1 CDS rpoB NC_022648.1 4538163 4542191 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit beta 4538163..4542191 Escherichia coli JJ1886 17433235 YP_008724355.1 CDS P423_22110 NC_022648.1 4542268 4546491 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit beta' 4542268..4546491 Escherichia coli JJ1886 17433236 YP_008724356.1 CDS thiH NC_022648.1 4546733 4547866 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine biosynthesis protein ThiH complement(4546733..4547866) Escherichia coli JJ1886 17433237 YP_008724357.1 CDS P423_22120 NC_022648.1 4547863 4548633 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thiazole synthase complement(4547863..4548633) Escherichia coli JJ1886 17433238 YP_008724358.1 CDS P423_22125 NC_022648.1 4548635 4548835 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur carrier protein ThiS complement(4548635..4548835) Escherichia coli JJ1886 17433239 YP_008724359.1 CDS P423_22130 NC_022648.1 4548819 4549574 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein MoeB complement(4548819..4549574) Escherichia coli JJ1886 17433240 YP_008724360.1 CDS P423_22135 NC_022648.1 4549567 4550202 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine-phosphate pyrophosphorylase complement(4549567..4550202) Escherichia coli JJ1886 17433241 YP_008724361.1 CDS P423_22140 NC_022648.1 4550202 4552097 R catalyzes the formation of 4-amino-2-methyl-5-phosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole and S-adenosyl-L-methionine in thiamine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomethylpyrimidine synthase ThiC complement(4550202..4552097) Escherichia coli JJ1886 17433242 YP_008724362.1 CDS P423_22145 NC_022648.1 4552330 4552806 R binds specifically to the major sigma factor sigma 70; active in stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-RNA polymerase sigma 70 factor complement(4552330..4552806) Escherichia coli JJ1886 17433243 YP_008724363.1 CDS nudC NC_022648.1 4552901 4553674 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH pyrophosphatase 4552901..4553674 Escherichia coli JJ1886 17433244 YP_008724364.1 CDS hemE NC_022648.1 4553714 4554778 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen decarboxylase 4553714..4554778 Escherichia coli JJ1886 17433245 YP_008724365.1 CDS P423_22160 NC_022648.1 4554788 4555459 D Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease VIII 4554788..4555459 Escherichia coli JJ1886 17433246 YP_008724366.1 CDS P423_22165 NC_022648.1 4555502 4556092 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4555502..4556092 Escherichia coli JJ1886 17433247 YP_008724367.1 CDS P423_22170 NC_022648.1 4556279 4556551 D histone-like DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4556279..4556551 Escherichia coli JJ1886 17433248 YP_008724368.1 CDS P423_22175 NC_022648.1 4556558 4557259 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4556558..4557259 Escherichia coli JJ1886 17433249 YP_008724369.1 CDS zraP NC_022648.1 4557261 4557680 R Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc resistance protein complement(4557261..4557680) Escherichia coli JJ1886 17433250 YP_008724370.1 CDS P423_22185 NC_022648.1 4557918 4559294 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein ZraS 4557918..4559294 Escherichia coli JJ1886 17433251 YP_008724371.1 CDS P423_22190 NC_022648.1 4559291 4560616 D DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetoacetate metabolism regulatory protein AtoC 4559291..4560616 Escherichia coli JJ1886 17433252 YP_008724372.1 CDS P423_22195 NC_022648.1 4560613 4561902 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylamine--glycine ligase complement(4560613..4561902) Escherichia coli JJ1886 17433253 YP_008724373.1 CDS purH NC_022648.1 4561914 4563503 R involved in de novo purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; purine biosynthesis protein purH complement(4561914..4563503) Escherichia coli JJ1886 17433254 YP_008724374.1 CDS P423_22225 NC_022648.1 4569214 4569597 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4569214..4569597 Escherichia coli JJ1886 17433259 YP_008724375.1 CDS P423_22230 NC_022648.1 4569661 4570104 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase complement(4569661..4570104) Escherichia coli JJ1886 17433260 YP_008724376.1 CDS P423_22235 NC_022648.1 4570261 4571190 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; homoserine O-succinyltransferase 4570261..4571190 Escherichia coli JJ1886 17433261 YP_008724377.1 CDS P423_22240 NC_022648.1 4571459 4573060 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate synthase 4571459..4573060 Escherichia coli JJ1886 17433262 YP_008724378.1 CDS P423_22245 NC_022648.1 4573090 4574394 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase 4573090..4574394 Escherichia coli JJ1886 17433263 YP_008724379.1 CDS aceK NC_022648.1 4574519 4576243 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional isocitrate dehydrogenase kinase/phosphatase 4574519..4576243 Escherichia coli JJ1886 17433264 YP_008724380.1 CDS P423_22255 NC_022648.1 4576260 4577084 R regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator complement(4576260..4577084) Escherichia coli JJ1886 17433265 YP_008724381.1 CDS metH NC_022648.1 4577285 4580968 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; B12-dependent methionine synthase 4577285..4580968 Escherichia coli JJ1886 17433266 YP_008724382.1 CDS P423_22265 NC_022648.1 4581389 4581838 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4581389..4581838 Escherichia coli JJ1886 17433267 YP_008724383.1 CDS P423_22270 NC_022648.1 4582009 4583640 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4582009..4583640 Escherichia coli JJ1886 17433268 YP_008724384.1 CDS P423_22275 NC_022648.1 4583730 4584419 R peptidase E; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; Derived by automated computational analysis using gene prediction method: Protein Homology.; (alpha)-aspartyl dipeptidase complement(4583730..4584419) Escherichia coli JJ1886 17433269 YP_008724385.1 CDS P423_22280 NC_022648.1 4584526 4584681 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4584526..4584681 Escherichia coli JJ1886 17433270 YP_008724386.1 CDS P423_22285 NC_022648.1 4584801 4586030 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-sorbose 1-phosphate reductase complement(4584801..4586030) Escherichia coli JJ1886 17433271 YP_008724387.1 CDS P423_22290 NC_022648.1 4586082 4586906 R hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IID complement(4586082..4586906) Escherichia coli JJ1886 17433272 YP_008724388.1 CDS P423_22295 NC_022648.1 4586917 4587714 R catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IIC complement(4586917..4587714) Escherichia coli JJ1886 17433273 YP_008724389.1 CDS P423_22300 NC_022648.1 4587780 4588274 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS friuctose transporter subunit IIB complement(4587780..4588274) Escherichia coli JJ1886 17433274 YP_008724390.1 CDS P423_22305 NC_022648.1 4588274 4588681 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbose transporter subunit IIA complement(4588274..4588681) Escherichia coli JJ1886 17433275 YP_008724391.1 CDS P423_22310 NC_022648.1 4588691 4589497 R Converts D-sorbitol-dphosphate to D-fructose-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sorbitol-6-phosphate 2-dehydrogenase complement(4588691..4589497) Escherichia coli JJ1886 17433276 YP_008724392.1 CDS P423_22315 NC_022648.1 4589567 4590514 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Cro/Cl family transcriptional regulator complement(4589567..4590514) Escherichia coli JJ1886 17433277 YP_008724393.1 CDS P423_22320 NC_022648.1 4590862 4591734 D catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridine synthase F 4590862..4591734 Escherichia coli JJ1886 17433278 YP_008724394.1 CDS P423_22325 NC_022648.1 4591735 4592007 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4591735..4592007) Escherichia coli JJ1886 17433279 YP_008724395.1 CDS P423_22330 NC_022648.1 4592260 4593609 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate kinase complement(4592260..4593609) Escherichia coli JJ1886 17433280 YP_008724396.1 CDS pgi NC_022648.1 4594134 4595783 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate isomerase 4594134..4595783 Escherichia coli JJ1886 17433281 YP_008724397.1 CDS P423_22340 NC_022648.1 4596281 4596523 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4596281..4596523 Escherichia coli JJ1886 17433282 YP_008724398.1 CDS P423_22345 NC_022648.1 4596638 4597276 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4596638..4597276 Escherichia coli JJ1886 17433283 YP_008724399.1 CDS P423_22350 NC_022648.1 4597273 4598010 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4597273..4598010 Escherichia coli JJ1886 17433284 YP_008724400.1 CDS P423_22355 NC_022648.1 4598010 4600106 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4598010..4600106 Escherichia coli JJ1886 17433285 YP_008724401.1 CDS P423_22360 NC_022648.1 4600153 4600431 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4600153..4600431) Escherichia coli JJ1886 17433286 YP_008724402.1 CDS P423_22365 NC_022648.1 4600491 4600649 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4600491..4600649 Escherichia coli JJ1886 17433287 YP_008724403.1 CDS P423_22370 NC_022648.1 4600646 4601056 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate-starvation-inducible protein PsiE 4600646..4601056 Escherichia coli JJ1886 17433288 YP_008724404.1 CDS malG NC_022648.1 4601150 4602040 R with MalKFE is involved in the transport of maltose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose transporter permease complement(4601150..4602040) Escherichia coli JJ1886 17433289 YP_008724405.1 CDS malF NC_022648.1 4602055 4603599 R with MalKGE is involved in maltose transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose transporter membrane protein complement(4602055..4603599) Escherichia coli JJ1886 17433290 YP_008724406.1 CDS malE NC_022648.1 4603753 4604943 R functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein complement(4603753..4604943) Escherichia coli JJ1886 17433291 YP_008724407.1 CDS P423_22390 NC_022648.1 4605036 4605131 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter complement(4605036..4605131) Escherichia coli JJ1886 17433292 YP_008724408.1 CDS P423_22395 NC_022648.1 4605308 4606423 D with malEFG is involved in import of maltose/maltodextrin; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter ATP-binding protein 4605308..4606423 Escherichia coli JJ1886 17433293 YP_008724409.1 CDS lamB NC_022648.1 4606495 4607835 D porin involved in the transport of maltose and maltodextrins; Derived by automated computational analysis using gene prediction method: Protein Homology.; maltoporin 4606495..4607835 Escherichia coli JJ1886 17433294 YP_008724410.1 CDS P423_22405 NC_022648.1 4608068 4608988 D Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose operon protein 4608068..4608988 Escherichia coli JJ1886 17433295 YP_008724411.1 CDS ubiC NC_022648.1 4609167 4609664 D catalyzes the formation of 4-hydroxybenzoate from chorismate; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate pyruvate lyase 4609167..4609664 Escherichia coli JJ1886 17433296 YP_008724412.1 CDS ubiA NC_022648.1 4609677 4610549 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybenzoate polyprenyltransferase 4609677..4610549 Escherichia coli JJ1886 17433297 YP_008724413.1 CDS P423_22420 NC_022648.1 4610704 4613187 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate acyltransferase complement(4610704..4613187) Escherichia coli JJ1886 17433298 YP_008724414.1 CDS P423_22425 NC_022648.1 4613298 4613666 D catalyzes the phosphorylation of diacylglycerol to form diacylglycerol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diacylglycerol kinase 4613298..4613666 Escherichia coli JJ1886 17433299 YP_008724415.1 CDS P423_22430 NC_022648.1 4613776 4614384 D Represses a number of genes involved in the response to DNA damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; LexA repressor 4613776..4614384 Escherichia coli JJ1886 17433300 YP_008724416.1 CDS P423_22435 NC_022648.1 4614457 4615782 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-damage-inducible protein 4614457..4615782 Escherichia coli JJ1886 17433301 YP_008724417.1 CDS P423_22440 NC_022648.1 4615898 4616107 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4615898..4616107 Escherichia coli JJ1886 17433302 YP_008724418.1 CDS P423_22445 NC_022648.1 4616149 4616664 R Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4616149..4616664) Escherichia coli JJ1886 17433303 YP_008724419.1 CDS P423_22450 NC_022648.1 4616820 4617815 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase A 4616820..4617815 Escherichia coli JJ1886 17433304 YP_008724420.1 CDS pspG NC_022648.1 4617949 4618191 D coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 4617949..4618191 Escherichia coli JJ1886 17433305 YP_008724421.1 CDS P423_22460 NC_022648.1 4618356 4619339 R Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase complement(4618356..4619339) Escherichia coli JJ1886 17433306 YP_008724422.1 CDS P423_22465 NC_022648.1 4619445 4621481 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; oxidoreductase complement(4619445..4621481) Escherichia coli JJ1886 17433307 YP_008724423.1 CDS P423_22470 NC_022648.1 4621492 4622772 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4621492..4622772) Escherichia coli JJ1886 17433308 YP_008724424.1 CDS P423_22475 NC_022648.1 4622799 4623578 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; enoyl-CoA hydratase complement(4622799..4623578) Escherichia coli JJ1886 17433309 YP_008724425.1 CDS P423_22480 NC_022648.1 4623571 4625142 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; CoA-transferase complement(4623571..4625142) Escherichia coli JJ1886 17433310 YP_008724426.1 CDS P423_22485 NC_022648.1 4625398 4626432 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; regulator 4625398..4626432 Escherichia coli JJ1886 17433311 YP_008724427.1 CDS P423_22490 NC_022648.1 4626505 4627920 D unwinds double stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA helicase 4626505..4627920 Escherichia coli JJ1886 17433312 YP_008724428.1 CDS alr NC_022648.1 4627973 4629052 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine racemase 4627973..4629052 Escherichia coli JJ1886 17433313 YP_008724429.1 CDS P423_22500 NC_022648.1 4629075 4629632 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nicotinamide mononucleotide transporter 4629075..4629632 Escherichia coli JJ1886 17433314 YP_008724430.1 CDS P423_22505 NC_022648.1 4629629 4630633 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NAD metabolism ATPase/kinase 4629629..4630633 Escherichia coli JJ1886 17433315 YP_008724431.1 CDS P423_22510 NC_022648.1 4630715 4631908 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid aminotransferase 4630715..4631908 Escherichia coli JJ1886 17433316 YP_008724432.1 CDS P423_22515 NC_022648.1 4632090 4634834 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxoglutarate dehydrogenase E1 4632090..4634834 Escherichia coli JJ1886 17433317 YP_008724433.1 CDS P423_22520 NC_022648.1 4634867 4636021 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide succinyltransferase 4634867..4636021 Escherichia coli JJ1886 17433318 YP_008724434.1 CDS P423_22525 NC_022648.1 4636033 4637451 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dihydrolipoamide dehydrogenase 4636033..4637451 Escherichia coli JJ1886 17433319 YP_008724435.1 CDS sucC NC_022648.1 4637473 4638642 D catalyzes the interconversion of succinyl-CoA and succinate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate--CoA ligase subunit beta 4637473..4638642 Escherichia coli JJ1886 17433320 YP_008724436.1 CDS P423_22535 NC_022648.1 4638655 4639527 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyl-CoA synthetase subunit alpha 4638655..4639527 Escherichia coli JJ1886 17433321 YP_008724437.1 CDS P423_22540 NC_022648.1 4639739 4641238 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4639739..4641238 Escherichia coli JJ1886 17433322 YP_008724438.1 CDS P423_22545 NC_022648.1 4641250 4642323 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lactate dehydrogenase 4641250..4642323 Escherichia coli JJ1886 17433323 YP_008724439.1 CDS glnG NC_022648.1 4642312 4643670 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulation protein NR(I) complement(4642312..4643670) Escherichia coli JJ1886 17433324 YP_008724440.1 CDS P423_22555 NC_022648.1 4643663 4645483 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATPase complement(4643663..4645483) Escherichia coli JJ1886 17433325 YP_008724441.1 CDS aphA NC_022648.1 4645760 4646473 D Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransferase 4645760..4646473 Escherichia coli JJ1886 17433326 YP_008724442.1 CDS P423_22565 NC_022648.1 4646584 4647000 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamin phosphate synthase 4646584..4647000 Escherichia coli JJ1886 17433327 YP_008724443.1 CDS P423_22570 NC_022648.1 4647004 4647360 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4647004..4647360 Escherichia coli JJ1886 17433328 YP_008724444.1 CDS P423_22575 NC_022648.1 4647395 4650217 R Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit A complement(4647395..4650217) Escherichia coli JJ1886 17433329 YP_008724445.1 CDS P423_22580 NC_022648.1 4650472 4651008 D binds to single stranded DNA and PriA helcase facilitate replication restart; Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein 4650472..4651008 Escherichia coli JJ1886 17433330 YP_008724446.1 CDS P423_22585 NC_022648.1 4651107 4651388 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4651107..4651388) Escherichia coli JJ1886 17433331 YP_008724447.1 CDS P423_22590 NC_022648.1 4651817 4653403 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4651817..4653403 Escherichia coli JJ1886 17433332 YP_008724448.1 CDS P423_22595 NC_022648.1 4653406 4653729 R regulates genes involved in response to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4653406..4653729) Escherichia coli JJ1886 17433333 YP_008724449.1 CDS P423_22600 NC_022648.1 4653815 4654279 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4653815..4654279 Escherichia coli JJ1886 17433334 YP_008724450.1 CDS P423_22605 NC_022648.1 4654826 4656175 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permase 4654826..4656175 Escherichia coli JJ1886 17433335 YP_008724451.1 CDS P423_22610 NC_022648.1 4656326 4657975 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 4656326..4657975 Escherichia coli JJ1886 17433336 YP_008724452.1 CDS P423_22615 NC_022648.1 4658011 4658895 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator complement(4658011..4658895) Escherichia coli JJ1886 17433337 YP_008724453.1 CDS P423_22620 NC_022648.1 4658999 4659409 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LrgA 4658999..4659409 Escherichia coli JJ1886 17433338 YP_008724454.1 CDS P423_22625 NC_022648.1 4659402 4660091 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LrgB 4659402..4660091 Escherichia coli JJ1886 17433339 YP_008724455.1 CDS actP NC_022648.1 4660130 4661779 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; actetate permease complement(4660130..4661779) Escherichia coli JJ1886 17433340 YP_008724456.1 CDS P423_22635 NC_022648.1 4661776 4662090 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4661776..4662090) Escherichia coli JJ1886 17433341 YP_008724457.1 CDS P423_22640 NC_022648.1 4662300 4664258 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA synthetase complement(4662300..4664258) Escherichia coli JJ1886 17433342 YP_008724458.1 CDS nrfA NC_022648.1 4664650 4666086 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C nitrite reductase subunit c552 4664650..4666086 Escherichia coli JJ1886 17433343 YP_008724459.1 CDS P423_22650 NC_022648.1 4666131 4666697 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C nitrite reductase pentaheme subunit 4666131..4666697 Escherichia coli JJ1886 17433344 YP_008724460.1 CDS P423_22655 NC_022648.1 4666694 4667365 D 4Fe4S subunit; may be involved in the transfer of electrons from quinones to the c-type cytochromes; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase subunit NrfC 4666694..4667365 Escherichia coli JJ1886 17433345 YP_008724461.1 CDS P423_22660 NC_022648.1 4667362 4668318 D membrane protein, may be involved in the transfer of electrons from quinones to c-type cytochromes; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase subunit NrfD 4667362..4668318 Escherichia coli JJ1886 17433346 YP_008724462.1 CDS P423_22665 NC_022648.1 4668398 4670056 D with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme lyase subunit NrfE 4668398..4670056 Escherichia coli JJ1886 17433347 YP_008724463.1 CDS P423_22670 NC_022648.1 4670049 4670432 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase subunit F 4670049..4670432 Escherichia coli JJ1886 17433348 YP_008724464.1 CDS P423_22675 NC_022648.1 4670429 4671025 D Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase complex subunit NrfG 4670429..4671025 Escherichia coli JJ1886 17433349 YP_008724465.1 CDS P423_22680 NC_022648.1 4671368 4672681 D Derived by automated computational analysis using gene prediction method: Protein Homology.; proton glutamate symport protein 4671368..4672681 Escherichia coli JJ1886 17433350 YP_008724466.1 CDS P423_22685 NC_022648.1 4673170 4673859 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4673170..4673859) Escherichia coli JJ1886 17433351 YP_008724467.1 CDS P423_22695 NC_022648.1 4675490 4676323 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C550 complement(4675490..4676323) Escherichia coli JJ1886 17433353 YP_008724468.1 CDS P423_22700 NC_022648.1 4676323 4677372 R transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(4676323..4677372) Escherichia coli JJ1886 17433354 YP_008724469.1 CDS P423_22705 NC_022648.1 4677472 4679040 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter substrate-binding protein complement(4677472..4679040) Escherichia coli JJ1886 17433355 YP_008724470.1 CDS P423_22710 NC_022648.1 4679415 4681094 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4679415..4681094) Escherichia coli JJ1886 17433356 YP_008724471.1 CDS P423_22715 NC_022648.1 4681143 4681562 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; spermidine/putrescine ABC transporter substrate-binding protein complement(4681143..4681562) Escherichia coli JJ1886 17433357 YP_008724472.1 CDS P423_22720 NC_022648.1 4681760 4683226 R part of a multidrug efflux system involved in resistance to acriflavin, puromycin, erytjhromycin and tetraphenylarsonium chloride; member of the outer membrane factor (OMF) family; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug RND transporter complement(4681760..4683226) Escherichia coli JJ1886 17433358 YP_008724473.1 CDS P423_22725 NC_022648.1 4683223 4685274 R possibly part of a tripartite efflux system composed of MdtN, MdtO and MdtP which could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(4683223..4685274) Escherichia coli JJ1886 17433359 YP_008724474.1 CDS P423_22730 NC_022648.1 4685274 4686305 R with MdtO and MdtP is involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein MdtN complement(4685274..4686305) Escherichia coli JJ1886 17433360 YP_008724475.1 CDS P423_22735 NC_022648.1 4686324 4686599 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4686324..4686599) Escherichia coli JJ1886 17433361 YP_008724476.1 CDS P423_22740 NC_022648.1 4686808 4688793 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4686808..4688793) Escherichia coli JJ1886 17433362 YP_008724477.1 CDS P423_22745 NC_022648.1 4689066 4689995 R Derived by automated computational analysis using gene prediction method: Protein Homology.; D-allose kinase complement(4689066..4689995) Escherichia coli JJ1886 17433363 YP_008724478.1 CDS P423_22750 NC_022648.1 4689979 4690674 R Derived by automated computational analysis using gene prediction method: Protein Homology.; allulose-6-phosphate 3-epimerase complement(4689979..4690674) Escherichia coli JJ1886 17433364 YP_008724479.1 CDS rbsC NC_022648.1 4690685 4691665 R functions to transport ribose at high affinity; forms a complex with RbsA2C2B; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose ABC transporter permease complement(4690685..4691665) Escherichia coli JJ1886 17433365 YP_008724480.1 CDS P423_22760 NC_022648.1 4691644 4693176 R with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose transporter ATP binding protein complement(4691644..4693176) Escherichia coli JJ1886 17433366 YP_008724481.1 CDS P423_22765 NC_022648.1 4693304 4694245 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C complement(4693304..4694245) Escherichia coli JJ1886 17433367 YP_008724482.1 CDS P423_22770 NC_022648.1 4694298 4695188 R involved in rpiB and als operon repression; Derived by automated computational analysis using gene prediction method: Protein Homology.; RpiR family transcriptional regulator complement(4694298..4695188) Escherichia coli JJ1886 17433368 YP_008724483.1 CDS P423_22775 NC_022648.1 4695249 4695353 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4695249..4695353 Escherichia coli JJ1886 17433369 YP_008724484.1 CDS P423_22780 NC_022648.1 4695547 4695996 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose 5-phosphate isomerase 4695547..4695996 Escherichia coli JJ1886 17433370 YP_008724485.1 CDS P423_22785 NC_022648.1 4696065 4696421 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4696065..4696421 Escherichia coli JJ1886 17433371 YP_008724486.1 CDS phnP NC_022648.1 4696449 4697207 R required for the use of phosphonates and phosphite as phosphorus sources; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate metabolism protein PhnP complement(4696449..4697207) Escherichia coli JJ1886 17433372 YP_008724487.1 CDS P423_22795 NC_022648.1 4697209 4697643 R PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoalkylphosphonic acid N-acetyltransferase complement(4697209..4697643) Escherichia coli JJ1886 17433373 YP_008724488.1 CDS P423_22800 NC_022648.1 4697630 4698187 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose 1,5-bisphosphokinase complement(4697630..4698187) Escherichia coli JJ1886 17433374 YP_008724489.1 CDS P423_22805 NC_022648.1 4698187 4699323 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate metabolism protein PhnM complement(4698187..4699323) Escherichia coli JJ1886 17433375 YP_008724490.1 CDS P423_22810 NC_022648.1 4699320 4700000 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphonate ABC transporter ATP-binding protein complement(4699320..4700000) Escherichia coli JJ1886 17433376 YP_008724491.1 CDS phnK NC_022648.1 4700111 4700869 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphonate C-P lyase complement(4700111..4700869) Escherichia coli JJ1886 17433377 YP_008724492.1 CDS P423_22820 NC_022648.1 4700866 4701711 R required for use of phosphonate and phosphite; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon-phosphorus lyase complex subunit PhnJ complement(4700866..4701711) Escherichia coli JJ1886 17433378 YP_008724493.1 CDS P423_22825 NC_022648.1 4701704 4702768 R required for the use of phosphonate and phosphite; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon-phosphorus lyase complex subunit PhnI complement(4701704..4702768) Escherichia coli JJ1886 17433379 YP_008724494.1 CDS phnH NC_022648.1 4702768 4703352 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate C-P lyase system protein PhnH complement(4702768..4703352) Escherichia coli JJ1886 17433380 YP_008724495.1 CDS P423_22835 NC_022648.1 4703349 4703801 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate C-P lyase system protein PhnG complement(4703349..4703801) Escherichia coli JJ1886 17433381 YP_008724496.1 CDS P423_22840 NC_022648.1 4703802 4704527 R may be involved in phosphonate uptake and biodegradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(4703802..4704527) Escherichia coli JJ1886 17433382 YP_008724497.1 CDS P423_22845 NC_022648.1 4704548 4705327 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter permease complement(4704548..4705327) Escherichia coli JJ1886 17433383 YP_008724498.1 CDS P423_22850 NC_022648.1 4705432 4706448 R with PhnCE is involved in the transport of phosphonates; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter substrate-binding protein complement(4705432..4706448) Escherichia coli JJ1886 17433384 YP_008724499.1 CDS glnQ NC_022648.1 4706473 4707261 R similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter ATP-binding protein complement(4706473..4707261) Escherichia coli JJ1886 17433385 YP_008724500.1 CDS P423_22860 NC_022648.1 4707394 4707837 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4707394..4707837) Escherichia coli JJ1886 17433386 YP_008724501.1 CDS P423_22865 NC_022648.1 4707997 4708410 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4707997..4708410) Escherichia coli JJ1886 17433387 YP_008724502.1 CDS P423_22870 NC_022648.1 4708735 4710963 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4708735..4710963 Escherichia coli JJ1886 17433388 YP_008724503.1 CDS P423_22875 NC_022648.1 4710960 4711838 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4710960..4711838 Escherichia coli JJ1886 17433389 YP_008724504.1 CDS P423_22880 NC_022648.1 4712102 4713604 D Derived by automated computational analysis using gene prediction method: Protein Homology.; proline/glycine betaine transporter 4712102..4713604 Escherichia coli JJ1886 17433390 YP_008724505.1 CDS P423_22885 NC_022648.1 4713716 4713805 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4713716..4713805 Escherichia coli JJ1886 17433391 YP_008724506.1 CDS P423_22890 NC_022648.1 4713781 4714881 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein BasS/PmrB complement(4713781..4714881) Escherichia coli JJ1886 17433392 YP_008724507.1 CDS P423_22895 NC_022648.1 4714882 4715550 R response regulator in two-component regulatory system with BasS; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4714882..4715550) Escherichia coli JJ1886 17433393 YP_008724508.1 CDS P423_22900 NC_022648.1 4715547 4717190 R Derived by automated computational analysis using gene prediction method: Protein Homology.; metal dependent hydrolase complement(4715547..4717190) Escherichia coli JJ1886 17433394 YP_008724509.1 CDS P423_22905 NC_022648.1 4717294 4718631 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:agmatine antiporter complement(4717294..4718631) Escherichia coli JJ1886 17433395 YP_008724510.1 CDS P423_22910 NC_022648.1 4718768 4719529 R regulates genes involved in arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4718768..4719529) Escherichia coli JJ1886 17433396 YP_008724511.1 CDS P423_22915 NC_022648.1 4719865 4722135 R biodegradative; catalyzes the formation of agmatine from arginine; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine decarboxylase complement(4719865..4722135) Escherichia coli JJ1886 17433397 YP_008724512.1 CDS P423_22920 NC_022648.1 4722331 4723239 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4722331..4723239) Escherichia coli JJ1886 17433398 YP_008724513.1 CDS P423_22925 NC_022648.1 4723522 4724877 D catalyses the hydrolysis of terminal non-reducing alpha-D-galactose residues in alpha-D-galactosides; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-galactosidase 4723522..4724877 Escherichia coli JJ1886 17433399 YP_008724514.1 CDS P423_22930 NC_022648.1 4724874 4725524 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4724874..4725524) Escherichia coli JJ1886 17433400 YP_008724515.1 CDS P423_22935 NC_022648.1 4725647 4727293 R catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase complement(4725647..4727293) Escherichia coli JJ1886 17433401 YP_008724516.1 CDS P423_22940 NC_022648.1 4727371 4728711 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(4727371..4728711) Escherichia coli JJ1886 17433402 YP_008724517.1 CDS P423_22945 NC_022648.1 4729282 4730001 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4729282..4730001) Escherichia coli JJ1886 17433403 YP_008724518.1 CDS P423_22950 NC_022648.1 4729998 4731629 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(4729998..4731629) Escherichia coli JJ1886 17433404 YP_008724519.1 CDS P423_22955 NC_022648.1 4731810 4732040 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4731810..4732040 Escherichia coli JJ1886 17433405 YP_008724520.1 CDS P423_22960 NC_022648.1 4732052 4732324 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4732052..4732324 Escherichia coli JJ1886 17433406 YP_008724521.1 CDS P423_22965 NC_022648.1 4732434 4734746 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; outer membrane usher protein LpfC complement(4732434..4734746) Escherichia coli JJ1886 17433407 YP_008724522.1 CDS P423_22970 NC_022648.1 4735004 4735696 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4735004..4735696) Escherichia coli JJ1886 17433408 YP_008724523.1 CDS P423_22975 NC_022648.1 4735761 4736285 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4735761..4736285) Escherichia coli JJ1886 17433409 YP_008724524.1 CDS P423_22980 NC_022648.1 4736686 4740498 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; serine protease pic autotransporter 4736686..4740498 Escherichia coli JJ1886 17433410 YP_008724525.1 CDS P423_22985 NC_022648.1 4741396 4742226 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; AraC family transcriptional regulator 4741396..4742226 Escherichia coli JJ1886 17433411 YP_008724526.1 CDS P423_22990 NC_022648.1 4743547 4747311 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; autotransporter 4743547..4747311 Escherichia coli JJ1886 17433412 YP_008724527.1 CDS P423_22995 NC_022648.1 4747525 4747797 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4747525..4747797 Escherichia coli JJ1886 17433413 YP_008724528.1 CDS P423_23000 NC_022648.1 4747883 4747978 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4747883..4747978 Escherichia coli JJ1886 17433414 YP_008724529.1 CDS P423_23005 NC_022648.1 4748025 4748321 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4748025..4748321 Escherichia coli JJ1886 17433415 YP_008724530.1 CDS P423_23010 NC_022648.1 4748349 4748522 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4748349..4748522 Escherichia coli JJ1886 17433416 YP_008724531.1 CDS lysS NC_022648.1 4748641 4750158 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysyl-tRNA synthetase complement(4748641..4750158) Escherichia coli JJ1886 17433417 YP_008724532.1 CDS P423_23020 NC_022648.1 4750395 4751852 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide permease complement(4750395..4751852) Escherichia coli JJ1886 17433418 YP_008724533.1 CDS P423_23025 NC_022648.1 4751911 4754058 R constitutive; catalyzes the formation of cadaverine from lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine decarboxylase CadA complement(4751911..4754058) Escherichia coli JJ1886 17433419 YP_008724534.1 CDS cadB NC_022648.1 4754138 4755472 R antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:agmatine antiporter complement(4754138..4755472) Escherichia coli JJ1886 17433420 YP_008724535.1 CDS P423_23035 NC_022648.1 4755838 4757376 R regulates the cadBA operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4755838..4757376) Escherichia coli JJ1886 17433421 YP_008724536.1 CDS P423_23045 NC_022648.1 4758175 4758750 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4758175..4758750) Escherichia coli JJ1886 17433423 YP_008724537.1 CDS dipZ NC_022648.1 4758787 4760484 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein complement(4758787..4760484) Escherichia coli JJ1886 17433424 YP_008724538.1 CDS P423_23055 NC_022648.1 4760460 4760798 R copper binding protein required for copper tolerance; involved in resistance toward heavy metals; Derived by automated computational analysis using gene prediction method: Protein Homology.; divalent ion tolerance protein CutA complement(4760460..4760798) Escherichia coli JJ1886 17433425 YP_008724539.1 CDS P423_23060 NC_022648.1 4760914 4762215 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(4760914..4762215) Escherichia coli JJ1886 17433426 YP_008724540.1 CDS aspA NC_022648.1 4762333 4763769 R catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate ammonia-lyase complement(4762333..4763769) Escherichia coli JJ1886 17433427 YP_008724541.1 CDS fxsA NC_022648.1 4764106 4764582 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; exclusion suppressor FxsA 4764106..4764582 Escherichia coli JJ1886 17433428 YP_008724542.1 CDS P423_23075 NC_022648.1 4764598 4765854 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(4764598..4765854) Escherichia coli JJ1886 17433429 YP_008724543.1 CDS groES NC_022648.1 4766130 4766423 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; co-chaperonin GroES 4766130..4766423 Escherichia coli JJ1886 17433430 YP_008724544.1 CDS groEL NC_022648.1 4766467 4768113 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone GroEL 4766467..4768113 Escherichia coli JJ1886 17433431 YP_008724545.1 CDS P423_23090 NC_022648.1 4768251 4768604 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4768251..4768604 Escherichia coli JJ1886 17433432 YP_008724546.1 CDS P423_23095 NC_022648.1 4768654 4769523 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4768654..4769523) Escherichia coli JJ1886 17433433 YP_008724547.1 CDS P423_23100 NC_022648.1 4769758 4770786 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine 2,3-aminomutase complement(4769758..4770786) Escherichia coli JJ1886 17433434 YP_008724548.1 CDS P423_23105 NC_022648.1 4770828 4771394 D Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor P 4770828..4771394 Escherichia coli JJ1886 17433435 YP_008724549.1 CDS P423_23110 NC_022648.1 4771446 4771571 D Derived by automated computational analysis using gene prediction method: Protein Homology.; entericidin B membrane lipoprotein 4771446..4771571 Escherichia coli JJ1886 17433436 YP_008724550.1 CDS P423_23115 NC_022648.1 4771682 4771828 D Derived by automated computational analysis using gene prediction method: Protein Homology.; entericidin B membrane lipoprotein 4771682..4771828 Escherichia coli JJ1886 17433437 YP_008724551.1 CDS P423_23120 NC_022648.1 4772004 4772321 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4772004..4772321 Escherichia coli JJ1886 17433438 YP_008724552.1 CDS P423_23125 NC_022648.1 4772318 4772851 R lipocalin; globomycin-sensitive outer membrane lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein Blc complement(4772318..4772851) Escherichia coli JJ1886 17433439 YP_008724553.1 CDS P423_23130 NC_022648.1 4772940 4774073 R Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-lactamase complement(4772940..4774073) Escherichia coli JJ1886 17433440 YP_008724554.1 CDS P423_23135 NC_022648.1 4774136 4774495 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase subunit D complement(4774136..4774495) Escherichia coli JJ1886 17433441 YP_008724555.1 CDS P423_23140 NC_022648.1 4774506 4774901 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase subunit C complement(4774506..4774901) Escherichia coli JJ1886 17433442 YP_008724556.1 CDS P423_23145 NC_022648.1 4774912 4775646 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase iron-sulfur subunit complement(4774912..4775646) Escherichia coli JJ1886 17433443 YP_008724557.1 CDS P423_23150 NC_022648.1 4775639 4777447 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase flavoprotein subunit complement(4775639..4777447) Escherichia coli JJ1886 17433444 YP_008724558.1 CDS P423_23155 NC_022648.1 4777772 4778749 D poxA; regulates pyruvate oxidase poxB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lysyl-tRNA synthetase 4777772..4778749 Escherichia coli JJ1886 17433445 YP_008724559.1 CDS P423_23160 NC_022648.1 4778968 4780470 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease 4778968..4780470 Escherichia coli JJ1886 17433446 YP_008724560.1 CDS P423_23165 NC_022648.1 4780568 4780882 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4780568..4780882 Escherichia coli JJ1886 17433447 YP_008724561.1 CDS P423_23170 NC_022648.1 4780913 4784236 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel protein complement(4780913..4784236) Escherichia coli JJ1886 17433448 YP_008724562.1 CDS psd NC_022648.1 4784258 4785226 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylserine decarboxylase complement(4784258..4785226) Escherichia coli JJ1886 17433449 YP_008724563.1 CDS P423_23180 NC_022648.1 4785323 4786375 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase RsgA complement(4785323..4786375) Escherichia coli JJ1886 17433450 YP_008724564.1 CDS P423_23185 NC_022648.1 4786470 4787015 D 3'-5' exoribonuclease specific for small oligoribonuclotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; oligoribonuclease 4786470..4787015 Escherichia coli JJ1886 17433451 YP_008724565.1 CDS P423_23205 NC_022648.1 4787794 4788933 R Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster binding protein complement(4787794..4788933) Escherichia coli JJ1886 17433455 YP_008724566.1 CDS P423_23210 NC_022648.1 4788932 4790479 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate kinase 4788932..4790479 Escherichia coli JJ1886 17433456 YP_008724567.1 CDS P423_23215 NC_022648.1 4790451 4790912 D needed for nucleoid integrity; possibly involved in cell wall synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-binding protein 4790451..4790912 Escherichia coli JJ1886 17433457 YP_008724568.1 CDS P423_23220 NC_022648.1 4790931 4792262 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 4790931..4792262 Escherichia coli JJ1886 17433458 YP_008724569.1 CDS P423_23225 NC_022648.1 4792272 4794119 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein 4792272..4794119 Escherichia coli JJ1886 17433459 YP_008724570.1 CDS miaA NC_022648.1 4794112 4795062 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA delta(2)-isopentenylpyrophosphate transferase 4794112..4795062 Escherichia coli JJ1886 17433460 YP_008724571.1 CDS hfq NC_022648.1 4795148 4795456 D HF-I, host factor for RNA phage Q beta replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding protein Hfq 4795148..4795456 Escherichia coli JJ1886 17433461 YP_008724572.1 CDS P423_23240 NC_022648.1 4795532 4796812 D involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase HflX 4795532..4796812 Escherichia coli JJ1886 17433462 YP_008724573.1 CDS P423_23245 NC_022648.1 4796898 4798157 D with HflC inhibits proteolysis of lambda cII protein by FtsH; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsH 4796898..4798157 Escherichia coli JJ1886 17433463 YP_008724574.1 CDS P423_23250 NC_022648.1 4798160 4799164 D with HflK inhibits proteolysis of lambda cII protein by FtsH; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsH 4798160..4799164 Escherichia coli JJ1886 17433464 YP_008724575.1 CDS P423_23255 NC_022648.1 4799246 4799443 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4799246..4799443 Escherichia coli JJ1886 17433465 YP_008724576.1 CDS P423_23260 NC_022648.1 4799547 4800845 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylosuccinate synthetase 4799547..4800845 Escherichia coli JJ1886 17433466 YP_008724577.1 CDS P423_23265 NC_022648.1 4801050 4801475 D negatively regulates the transcription of genes upregulated by nitrosative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4801050..4801475 Escherichia coli JJ1886 17433467 YP_008724578.1 CDS P423_23270 NC_022648.1 4801514 4803955 D 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; exoribonuclease R 4801514..4803955 Escherichia coli JJ1886 17433468 YP_008724579.1 CDS P423_23275 NC_022648.1 4804046 4804777 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA (guanosine-2'-O-)-methyltransferase 4804046..4804777 Escherichia coli JJ1886 17433469 YP_008724580.1 CDS P423_23280 NC_022648.1 4804904 4805305 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4804904..4805305 Escherichia coli JJ1886 17433470 YP_008724581.1 CDS P423_23285 NC_022648.1 4805324 4806022 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4805324..4806022 Escherichia coli JJ1886 17433471 YP_008724582.1 CDS P423_23290 NC_022648.1 4806072 4806731 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4806072..4806731 Escherichia coli JJ1886 17433472 YP_008724583.1 CDS P423_23295 NC_022648.1 4806749 4807147 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4806749..4807147 Escherichia coli JJ1886 17433473 YP_008724584.1 CDS P423_23300 NC_022648.1 4807157 4807795 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4807157..4807795 Escherichia coli JJ1886 17433474 YP_008724585.1 CDS P423_23305 NC_022648.1 4807798 4808961 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4807798..4808961 Escherichia coli JJ1886 17433475 YP_008724586.1 CDS P423_23310 NC_022648.1 4809045 4810670 D catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; isovaleryl CoA dehydrogenase 4809045..4810670 Escherichia coli JJ1886 17433476 YP_008724587.1 CDS P423_23315 NC_022648.1 4810787 4811062 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4810787..4811062) Escherichia coli JJ1886 17433477 YP_008724588.1 CDS P423_23320 NC_022648.1 4811211 4811540 R in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm stress and motility protein A complement(4811211..4811540) Escherichia coli JJ1886 17433478 YP_008724589.1 CDS P423_23325 NC_022648.1 4811722 4812471 D YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase 4811722..4812471 Escherichia coli JJ1886 17433479 YP_008724590.1 CDS P423_23330 NC_022648.1 4812468 4813223 R negative regulator of ulaG and ulaABCDEF; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4812468..4813223) Escherichia coli JJ1886 17433480 YP_008724591.1 CDS P423_23335 NC_022648.1 4813331 4814395 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ascorbate 6-phosphate lactonase complement(4813331..4814395) Escherichia coli JJ1886 17433481 YP_008724592.1 CDS P423_23340 NC_022648.1 4814750 4816147 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIC 4814750..4816147 Escherichia coli JJ1886 17433482 YP_008724593.1 CDS P423_23345 NC_022648.1 4816163 4816468 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIB 4816163..4816468 Escherichia coli JJ1886 17433483 YP_008724594.1 CDS P423_23350 NC_022648.1 4816478 4816942 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIA 4816478..4816942 Escherichia coli JJ1886 17433484 YP_008724595.1 CDS ulaD NC_022648.1 4816956 4817606 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-keto-L-gulonate-6-phosphate decarboxylase 4816956..4817606 Escherichia coli JJ1886 17433485 YP_008724596.1 CDS P423_23360 NC_022648.1 4817616 4818470 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-xylulose 5-phosphate 3-epimerase 4817616..4818470 Escherichia coli JJ1886 17433486 YP_008724597.1 CDS sgaE NC_022648.1 4818470 4819156 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase 4818470..4819156 Escherichia coli JJ1886 17433487 YP_008724598.1 CDS P423_23370 NC_022648.1 4819285 4819560 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4819285..4819560) Escherichia coli JJ1886 17433488 YP_008724599.1 CDS P423_23375 NC_022648.1 4819645 4819764 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4819645..4819764 Escherichia coli JJ1886 17433489 YP_008724600.1 CDS rpsF NC_022648.1 4819888 4820283 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S6 4819888..4820283 Escherichia coli JJ1886 17433490 YP_008724601.1 CDS P423_23385 NC_022648.1 4820437 4820604 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; primosomal replication protein N 4820437..4820604 Escherichia coli JJ1886 17433491 YP_008724602.1 CDS rpsR NC_022648.1 4820609 4820836 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S18 4820609..4820836 Escherichia coli JJ1886 17433492 YP_008724603.1 CDS rplI NC_022648.1 4820878 4821327 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L9 4820878..4821327 Escherichia coli JJ1886 17433493 YP_008724604.1 CDS P423_23400 NC_022648.1 4821927 4822220 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4821927..4822220 Escherichia coli JJ1886 17433494 YP_008724605.1 CDS P423_23405 NC_022648.1 4822223 4822729 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; toxin HipA 4822223..4822729 Escherichia coli JJ1886 17433495 YP_008724606.1 CDS P423_23410 NC_022648.1 4822729 4823490 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; toxin HipA 4822729..4823490 Escherichia coli JJ1886 17433496 YP_008724607.1 CDS P423_23415 NC_022648.1 4823633 4824910 R involved in the transport of aldohexuronates; Derived by automated computational analysis using gene prediction method: Protein Homology.; hexuronate transporter ExuT complement(4823633..4824910) Escherichia coli JJ1886 17433497 YP_008724608.1 CDS P423_23420 NC_022648.1 4825003 4827075 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; oxidoreductase complement(4825003..4827075) Escherichia coli JJ1886 17433498 YP_008724609.1 CDS P423_23425 NC_022648.1 4827072 4828613 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4827072..4828613) Escherichia coli JJ1886 17433499 YP_008724610.1 CDS P423_23430 NC_022648.1 4828623 4829399 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acyl-CoA hydratase complement(4828623..4829399) Escherichia coli JJ1886 17433500 YP_008724611.1 CDS P423_23435 NC_022648.1 4829409 4830251 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endonuclease complement(4829409..4830251) Escherichia coli JJ1886 17433501 YP_008724612.1 CDS P423_23440 NC_022648.1 4830261 4831052 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3-ketoacyl-ACP reductase complement(4830261..4831052) Escherichia coli JJ1886 17433502 YP_008724613.1 CDS P423_23445 NC_022648.1 4831265 4831912 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; TetR family transcriptional regulator 4831265..4831912 Escherichia coli JJ1886 17433503 YP_008724614.1 CDS P423_23450 NC_022648.1 4831896 4832534 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4831896..4832534) Escherichia coli JJ1886 17433504 YP_008724615.1 CDS P423_23455 NC_022648.1 4832753 4833373 D FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 4832753..4833373 Escherichia coli JJ1886 17433505 YP_008724616.1 CDS P423_23460 NC_022648.1 4833682 4835094 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine glycine permease 4833682..4835094 Escherichia coli JJ1886 17433506 YP_008724617.1 CDS P423_23465 NC_022648.1 4835139 4835801 R Involved in anaerobic NO protection and iron metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster repair di-iron protein complement(4835139..4835801) Escherichia coli JJ1886 17433507 YP_008724618.1 CDS P423_23470 NC_022648.1 4835909 4836874 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4835909..4836874) Escherichia coli JJ1886 17433508 YP_008724619.1 CDS P423_23475 NC_022648.1 4836982 4837842 R Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase complement(4836982..4837842) Escherichia coli JJ1886 17433509 YP_008724620.1 CDS P423_23480 NC_022648.1 4837931 4838311 D Derived by automated computational analysis using gene prediction method: Protein Homology.; HxlR family transcriptional regulator 4837931..4838311 Escherichia coli JJ1886 17433510 YP_008724621.1 CDS cpdB NC_022648.1 4838440 4840383 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3'-nucleotidase complement(4838440..4840383) Escherichia coli JJ1886 17433511 YP_008724622.1 CDS P423_23490 NC_022648.1 4840573 4841313 D catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3'-5'-bisphosphate nucleotidase 4840573..4841313 Escherichia coli JJ1886 17433512 YP_008724623.1 CDS P423_23495 NC_022648.1 4841303 4841860 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4841303..4841860) Escherichia coli JJ1886 17433513 YP_008724624.1 CDS P423_23500 NC_022648.1 4842185 4842391 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4842185..4842391 Escherichia coli JJ1886 17433514 YP_008724625.1 CDS P423_23505 NC_022648.1 4842453 4843796 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4842453..4843796) Escherichia coli JJ1886 17433515 YP_008724626.1 CDS P423_23515 NC_022648.1 4844119 4844757 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine sulfoxide reductase A complement(4844119..4844757) Escherichia coli JJ1886 17433517 YP_008724627.1 CDS P423_23520 NC_022648.1 4844963 4846696 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4844963..4846696 Escherichia coli JJ1886 17433518 YP_008724628.1 CDS P423_23525 NC_022648.1 4846693 4850472 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4846693..4850472 Escherichia coli JJ1886 17433519 YP_008724629.1 CDS P423_23530 NC_022648.1 4850475 4850816 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamylcyclotransferase 4850475..4850816 Escherichia coli JJ1886 17433520 YP_008724630.1 CDS P423_23535 NC_022648.1 4851028 4851279 D part of the toxin-antitoxin ChpB-ChpS system; Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 4851028..4851279 Escherichia coli JJ1886 17433521 YP_008724631.1 CDS P423_23540 NC_022648.1 4851273 4851623 D toxin of the ChpB-ChpS toxin-antitoxin system; Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin B 4851273..4851623 Escherichia coli JJ1886 17433522 YP_008724632.1 CDS P423_23545 NC_022648.1 4851703 4852233 R catalyzes the hydrolysis of pyrophosphate to phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; inorganic pyrophosphatase complement(4851703..4852233) Escherichia coli JJ1886 17433523 YP_008724633.1 CDS P423_23550 NC_022648.1 4852543 4853499 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein 4852543..4853499 Escherichia coli JJ1886 17433524 YP_008724634.1 CDS P423_23555 NC_022648.1 4853639 4855141 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter ATP-binding protein 4853639..4855141 Escherichia coli JJ1886 17433525 YP_008724635.1 CDS P423_23560 NC_022648.1 4855155 4856177 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease 4855155..4856177 Escherichia coli JJ1886 17433526 YP_008724636.1 CDS P423_23565 NC_022648.1 4856164 4857159 D membrane component of a putative sugar ABC transporter system; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease 4856164..4857159 Escherichia coli JJ1886 17433527 YP_008724637.1 CDS P423_23570 NC_022648.1 4857192 4858190 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-1,6-bisphosphatase complement(4857192..4858190) Escherichia coli JJ1886 17433528 YP_008724638.1 CDS P423_23575 NC_022648.1 4858366 4859739 D ligates L-alanyl-gamma-D-glutamyl-meso-diaminopimelate to UDP-N-acetylmuramic acid for reincorporation into peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4858366..4859739 Escherichia coli JJ1886 17433529 YP_008724639.1 CDS P423_23580 NC_022648.1 4859890 4860441 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4859890..4860441) Escherichia coli JJ1886 17433530 YP_008724640.1 CDS pmbA NC_022648.1 4860535 4861887 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase PmbA 4860535..4861887 Escherichia coli JJ1886 17433531 YP_008724641.1 CDS P423_23590 NC_022648.1 4862070 4862456 D electron transport protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cytochrome B562 4862070..4862456 Escherichia coli JJ1886 17433532 YP_008724642.1 CDS P423_23595 NC_022648.1 4862501 4862965 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic ribonucleotide reductase-activating protein complement(4862501..4862965) Escherichia coli JJ1886 17433533 YP_008724643.1 CDS P423_23600 NC_022648.1 4863124 4865262 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside triphosphate reductase complement(4863124..4865262) Escherichia coli JJ1886 17433534 YP_008724644.1 CDS P423_23605 NC_022648.1 4865656 4867311 R Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-6-phosphate hydrolase complement(4865656..4867311) Escherichia coli JJ1886 17433535 YP_008724645.1 CDS P423_23610 NC_022648.1 4867361 4868779 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS maltose transporter subunit IIBC complement(4867361..4868779) Escherichia coli JJ1886 17433536 YP_008724646.1 CDS treR NC_022648.1 4868901 4869848 R regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose repressor complement(4868901..4869848) Escherichia coli JJ1886 17433537 YP_008724647.1 CDS P423_23620 NC_022648.1 4870227 4872923 D P-type ATPase involved in magnesium influx; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium-transporting ATPase 4870227..4872923 Escherichia coli JJ1886 17433538 YP_008724648.1 CDS P423_23625 NC_022648.1 4873004 4873105 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4873004..4873105) Escherichia coli JJ1886 17433539 YP_008724649.1 CDS P423_23630 NC_022648.1 4873129 4873515 R has endoribonuclease activity on mRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease L-PSP complement(4873129..4873515) Escherichia coli JJ1886 17433540 YP_008724650.1 CDS P423_23635 NC_022648.1 4873588 4874049 R involved in the allosteric regulation of aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate carbamoyltransferase regulatory subunit complement(4873588..4874049) Escherichia coli JJ1886 17433541 YP_008724651.1 CDS P423_23640 NC_022648.1 4874062 4874997 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate carbamoyltransferase catalytic subunit complement(4874062..4874997) Escherichia coli JJ1886 17433542 YP_008724652.1 CDS P423_23645 NC_022648.1 4875168 4875311 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4875168..4875311) Escherichia coli JJ1886 17433543 YP_008724653.1 CDS P423_23650 NC_022648.1 4875416 4875811 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mRNA endoribonuclease complement(4875416..4875811) Escherichia coli JJ1886 17433544 YP_008724654.1 CDS P423_23655 NC_022648.1 4875942 4876655 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(4875942..4876655) Escherichia coli JJ1886 17433545 YP_008724655.1 CDS P423_23660 NC_022648.1 4876726 4877319 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator 4876726..4877319 Escherichia coli JJ1886 17433546 YP_008724656.1 CDS P423_23665 NC_022648.1 4877319 4877447 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4877319..4877447 Escherichia coli JJ1886 17433547 YP_008724657.1 CDS P423_23670 NC_022648.1 4877464 4877916 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Toxin-antitoxin biofilm protein TabA 4877464..4877916 Escherichia coli JJ1886 17433548 YP_008724658.1 CDS P423_23675 NC_022648.1 4878039 4879310 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4878039..4879310 Escherichia coli JJ1886 17433549 YP_008724659.1 CDS P423_23680 NC_022648.1 4879297 4879635 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4879297..4879635 Escherichia coli JJ1886 17433550 YP_008724660.1 CDS P423_23685 NC_022648.1 4879692 4880696 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine carbamoyltransferase complement(4879692..4880696) Escherichia coli JJ1886 17433551 YP_008724661.1 CDS P423_23690 NC_022648.1 4880858 4881274 D Derived by automated computational analysis using gene prediction method: Protein Homology.; RNase E inhibitor protein 4880858..4881274 Escherichia coli JJ1886 17433552 YP_008724662.1 CDS P423_23695 NC_022648.1 4881320 4881823 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyltransferase complement(4881320..4881823) Escherichia coli JJ1886 17433553 YP_008724663.1 CDS P423_23700 NC_022648.1 4882016 4883212 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4882016..4883212 Escherichia coli JJ1886 17433554 YP_008724664.1 CDS P423_23705 NC_022648.1 4883266 4886121 R Derived by automated computational analysis using gene prediction method: Protein Homology.; valyl-tRNA synthase complement(4883266..4886121) Escherichia coli JJ1886 17433555 YP_008724665.1 CDS P423_23710 NC_022648.1 4886121 4886564 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit chi complement(4886121..4886564) Escherichia coli JJ1886 17433556 YP_008724666.1 CDS P423_23715 NC_022648.1 4886920 4888431 R catalyzes the removal of N-terminal amino acids preferably from various peptides; a cyteinylglycinase, transcription regulator and site-specific recombination factor; Derived by automated computational analysis using gene prediction method: Protein Homology.; multifunctional aminopeptidase A complement(4886920..4888431) Escherichia coli JJ1886 17433557 YP_008724667.1 CDS P423_23720 NC_022648.1 4888698 4889798 D with LptBGC is involved in lipopolysaccharide export; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide ABC transporter permease LptF 4888698..4889798 Escherichia coli JJ1886 17433558 YP_008724668.1 CDS P423_23725 NC_022648.1 4889798 4890880 D with LptABCF is involved in the transport of lipopolysaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide ABC transporter permease 4889798..4890880 Escherichia coli JJ1886 17433559 YP_008724669.1 CDS P423_23730 NC_022648.1 4891041 4892543 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4891041..4892543) Escherichia coli JJ1886 17433560 YP_008724670.1 CDS P423_23735 NC_022648.1 4892673 4893692 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(4892673..4893692) Escherichia coli JJ1886 17433561 YP_008724671.1 CDS P423_23745 NC_022648.1 4894159 4894749 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 4894159..4894749 Escherichia coli JJ1886 17433563 YP_008724672.1 CDS P423_23750 NC_022648.1 4894772 4895002 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4894772..4895002) Escherichia coli JJ1886 17433564 YP_008724673.1 CDS P423_23755 NC_022648.1 4895917 4896192 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 4895917..4896192 Escherichia coli JJ1886 17433565 YP_008724674.1 CDS P423_23760 NC_022648.1 4896563 4896832 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4896563..4896832 Escherichia coli JJ1886 17433566 YP_008724675.1 CDS P423_23765 NC_022648.1 4896986 4897750 R Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator complement(4896986..4897750) Escherichia coli JJ1886 17433567 YP_008724676.1 CDS P423_23770 NC_022648.1 4897990 4898889 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxy-galactonate aldolase 4897990..4898889 Escherichia coli JJ1886 17433568 YP_008724677.1 CDS P423_23775 NC_022648.1 4898906 4900423 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; galactarate dehydratase 4898906..4900423 Escherichia coli JJ1886 17433569 YP_008724678.1 CDS P423_23780 NC_022648.1 4900501 4901514 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 4-hydroxythreonine-4-phosphate dehydrogenase 4900501..4901514 Escherichia coli JJ1886 17433570 YP_008724679.1 CDS P423_23785 NC_022648.1 4901775 4903019 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; MFS transporter 4901775..4903019 Escherichia coli JJ1886 17433571 YP_008724680.1 CDS P423_23790 NC_022648.1 4903107 4903283 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS222 4903107..4903283 Escherichia coli JJ1886 17433572 YP_008724681.1 CDS P423_23795 NC_022648.1 4903624 4904511 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS ascorbate transporter subunit IIC 4903624..4904511 Escherichia coli JJ1886 17433573 YP_008724682.1 CDS P423_23800 NC_022648.1 4904711 4904947 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS66 complement(4904711..4904947) Escherichia coli JJ1886 17433574 YP_008724683.1 CDS P423_23805 NC_022648.1 4905043 4905231 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4905043..4905231) Escherichia coli JJ1886 17433575 YP_008724684.1 CDS P423_23810 NC_022648.1 4905285 4905710 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 4905285..4905710 Escherichia coli JJ1886 17433576 YP_008724685.1 CDS P423_23815 NC_022648.1 4905707 4906057 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase 4905707..4906057 Escherichia coli JJ1886 17433577 YP_008724686.1 CDS P423_23820 NC_022648.1 4906130 4907701 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS66 4906130..4907701 Escherichia coli JJ1886 17433578 YP_008724687.1 CDS P423_23825 NC_022648.1 4907972 4908985 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; deoxyribose mutarotase complement(4907972..4908985) Escherichia coli JJ1886 17433579 YP_008724688.1 CDS P423_23830 NC_022648.1 4908997 4910313 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar:proton symporter complement(4908997..4910313) Escherichia coli JJ1886 17433580 YP_008724689.1 CDS P423_23835 NC_022648.1 4910341 4911261 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ribokinase complement(4910341..4911261) Escherichia coli JJ1886 17433581 YP_008724690.1 CDS P423_23840 NC_022648.1 4911567 4912349 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4911567..4912349 Escherichia coli JJ1886 17433582 YP_008724691.1 CDS P423_23850 NC_022648.1 4913575 4913682 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alcohol dehydrogenase 4913575..4913682 Escherichia coli JJ1886 17433584 YP_008724692.1 CDS P423_23855 NC_022648.1 4913863 4914519 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; TetR family transcriptional regulator complement(4913863..4914519) Escherichia coli JJ1886 17433585 YP_008724693.1 CDS P423_23860 NC_022648.1 4914767 4916023 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4914767..4916023) Escherichia coli JJ1886 17433586 YP_008724694.1 CDS P423_23865 NC_022648.1 4916107 4918110 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4916107..4918110) Escherichia coli JJ1886 17433587 YP_008724695.1 CDS P423_23870 NC_022648.1 4918259 4919077 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase complement(4918259..4919077) Escherichia coli JJ1886 17433588 YP_008724696.1 CDS P423_23875 NC_022648.1 4919113 4919415 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4919113..4919415) Escherichia coli JJ1886 17433589 YP_008724697.1 CDS P423_23880 NC_022648.1 4920349 4920606 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4920349..4920606 Escherichia coli JJ1886 17433590 YP_008724698.1 CDS P423_23885 NC_022648.1 4920922 4921032 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4920922..4921032 Escherichia coli JJ1886 17433591 YP_008724699.1 CDS P423_23890 NC_022648.1 4921163 4921930 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron ABC transporter complement(4921163..4921930) Escherichia coli JJ1886 17433592 YP_008724700.1 CDS P423_23895 NC_022648.1 4921931 4922887 R with BtuD and BtuF transports vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; vtamin B12-transporter permease complement(4921931..4922887) Escherichia coli JJ1886 17433593 YP_008724701.1 CDS fecC NC_022648.1 4922884 4923882 R part of the FecBCDE citrate-dependent iron (III) transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter complement(4922884..4923882) Escherichia coli JJ1886 17433594 YP_008724702.1 CDS fecB NC_022648.1 4923879 4924781 R part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+); Derived by automated computational analysis using gene prediction method: Protein Homology.; iron siderophore-binding protein complement(4923879..4924781) Escherichia coli JJ1886 17433595 YP_008724703.1 CDS P423_23910 NC_022648.1 4924826 4927150 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(4924826..4927150) Escherichia coli JJ1886 17433596 YP_008724704.1 CDS P423_23915 NC_022648.1 4927237 4928190 R with FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; fec operon regulator FecR complement(4927237..4928190) Escherichia coli JJ1886 17433597 YP_008724705.1 CDS P423_23920 NC_022648.1 4928187 4928708 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor complement(4928187..4928708) Escherichia coli JJ1886 17433598 YP_008724706.1 CDS P423_23930 NC_022648.1 4929051 4929275 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS1 4929051..4929275 Escherichia coli JJ1886 17433599 YP_008724707.1 CDS P423_23935 NC_022648.1 4929302 4929487 D Derived by automated computational analysis using gene prediction method: Protein Homology.; insB 4929302..4929487 Escherichia coli JJ1886 17433600 YP_008724708.1 CDS P423_23940 NC_022648.1 4929488 4929697 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS1 4929488..4929697 Escherichia coli JJ1886 17433601 YP_008724709.1 CDS P423_23945 NC_022648.1 4930270 4931628 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4930270..4931628 Escherichia coli JJ1886 17433602 YP_008724710.1 CDS P423_23950 NC_022648.1 4931867 4933252 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS66 complement(4931867..4933252) Escherichia coli JJ1886 17433603 YP_008724711.1 CDS P423_23955 NC_022648.1 4933302 4933649 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase complement(4933302..4933649) Escherichia coli JJ1886 17433604 YP_008724712.1 CDS P423_23960 NC_022648.1 4933646 4934035 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(4933646..4934035) Escherichia coli JJ1886 17433605 YP_008724713.1 CDS P423_23965 NC_022648.1 4934381 4934815 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4934381..4934815) Escherichia coli JJ1886 17433606 YP_008724714.1 CDS P423_23970 NC_022648.1 4934803 4935204 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4934803..4935204) Escherichia coli JJ1886 17433607 YP_008724715.1 CDS P423_23975 NC_022648.1 4935464 4936033 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4935464..4936033) Escherichia coli JJ1886 17433608 YP_008724716.1 CDS P423_23980 NC_022648.1 4936543 4936743 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4936543..4936743) Escherichia coli JJ1886 17433609 YP_008724717.1 CDS P423_23985 NC_022648.1 4936763 4936903 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; gene expression modulator complement(4936763..4936903) Escherichia coli JJ1886 17433610 YP_008724718.1 CDS P423_23990 NC_022648.1 4937686 4937892 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4937686..4937892 Escherichia coli JJ1886 17433611 YP_008724719.1 CDS P423_23995 NC_022648.1 4937988 4938590 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4937988..4938590 Escherichia coli JJ1886 17433612 YP_008724720.1 CDS P423_24000 NC_022648.1 4939791 4940708 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4939791..4940708 Escherichia coli JJ1886 17433613 YP_008724721.1 CDS P423_24005 NC_022648.1 4940793 4941665 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4940793..4941665 Escherichia coli JJ1886 17433614 YP_008724722.1 CDS P423_24010 NC_022648.1 4942038 4944884 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4942038..4944884 Escherichia coli JJ1886 17433615 YP_008724723.1 CDS P423_24015 NC_022648.1 4944955 4945113 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4944955..4945113 Escherichia coli JJ1886 17433616 YP_008724724.1 CDS P423_24020 NC_022648.1 4945268 4946086 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4945268..4946086 Escherichia coli JJ1886 17433617 YP_008724725.1 CDS P423_24025 NC_022648.1 4946428 4946901 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4946428..4946901 Escherichia coli JJ1886 17433618 YP_008724726.1 CDS P423_24030 NC_022648.1 4946917 4947393 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4946917..4947393 Escherichia coli JJ1886 17433619 YP_008724727.1 CDS P423_24035 NC_022648.1 4947456 4947677 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4947456..4947677 Escherichia coli JJ1886 17433620 YP_008724728.1 CDS P423_24040 NC_022648.1 4947677 4947790 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4947677..4947790 Escherichia coli JJ1886 17433621 YP_008724729.1 CDS P423_24045 NC_022648.1 4947840 4948208 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 4947840..4948208 Escherichia coli JJ1886 17433622 YP_008724730.1 CDS P423_24050 NC_022648.1 4948298 4948675 D Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin 4948298..4948675 Escherichia coli JJ1886 17433623 YP_008724731.1 CDS P423_24055 NC_022648.1 4948672 4949160 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4948672..4949160 Escherichia coli JJ1886 17433624 YP_008724732.1 CDS P423_24065 NC_022648.1 4949671 4950096 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 4949671..4950096 Escherichia coli JJ1886 17433626 YP_008724733.1 CDS P423_24070 NC_022648.1 4950093 4950443 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase 4950093..4950443 Escherichia coli JJ1886 17433627 YP_008724734.1 CDS P423_24075 NC_022648.1 4950516 4952087 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS66 4950516..4952087 Escherichia coli JJ1886 17433628 YP_008724735.1 CDS P423_24080 NC_022648.1 4952358 4953371 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; deoxyribose mutarotase complement(4952358..4953371) Escherichia coli JJ1886 17433629 YP_008724736.1 CDS P423_24085 NC_022648.1 4953383 4954699 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar:proton symporter complement(4953383..4954699) Escherichia coli JJ1886 17433630 YP_008724737.1 CDS P423_24090 NC_022648.1 4954727 4955647 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ribokinase complement(4954727..4955647) Escherichia coli JJ1886 17433631 YP_008724738.1 CDS P423_24095 NC_022648.1 4955953 4956735 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4955953..4956735 Escherichia coli JJ1886 17433632 YP_008724739.1 CDS P423_24105 NC_022648.1 4957961 4958068 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alcohol dehydrogenase 4957961..4958068 Escherichia coli JJ1886 17433634 YP_008724740.1 CDS P423_24110 NC_022648.1 4958249 4958905 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; TetR family transcriptional regulator complement(4958249..4958905) Escherichia coli JJ1886 17433635 YP_008724741.1 CDS P423_24115 NC_022648.1 4959153 4960409 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4959153..4960409) Escherichia coli JJ1886 17433636 YP_008724742.1 CDS P423_24120 NC_022648.1 4960493 4962496 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4960493..4962496) Escherichia coli JJ1886 17433637 YP_008724743.1 CDS P423_24125 NC_022648.1 4962645 4963463 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase complement(4962645..4963463) Escherichia coli JJ1886 17433638 YP_008724744.1 CDS P423_24130 NC_022648.1 4963499 4963801 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4963499..4963801) Escherichia coli JJ1886 17433639 YP_008724745.1 CDS P423_24135 NC_022648.1 4964735 4964992 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4964735..4964992 Escherichia coli JJ1886 17433640 YP_008724746.1 CDS P423_24140 NC_022648.1 4965308 4965418 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4965308..4965418 Escherichia coli JJ1886 17433641 YP_008724747.1 CDS P423_24145 NC_022648.1 4965549 4966316 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron ABC transporter complement(4965549..4966316) Escherichia coli JJ1886 17433642 YP_008724748.1 CDS P423_24150 NC_022648.1 4966317 4967273 R with BtuD and BtuF transports vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; vtamin B12-transporter permease complement(4966317..4967273) Escherichia coli JJ1886 17433643 YP_008724749.1 CDS fecC NC_022648.1 4967270 4968268 R part of the FecBCDE citrate-dependent iron (III) transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter complement(4967270..4968268) Escherichia coli JJ1886 17433644 YP_008724750.1 CDS fecB NC_022648.1 4968265 4969167 R part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+); Derived by automated computational analysis using gene prediction method: Protein Homology.; iron siderophore-binding protein complement(4968265..4969167) Escherichia coli JJ1886 17433645 YP_008724751.1 CDS P423_24165 NC_022648.1 4969212 4971536 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(4969212..4971536) Escherichia coli JJ1886 17433646 YP_008724752.1 CDS P423_24170 NC_022648.1 4971623 4972576 R with FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; fec operon regulator FecR complement(4971623..4972576) Escherichia coli JJ1886 17433647 YP_008724753.1 CDS P423_24175 NC_022648.1 4972573 4973094 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor complement(4972573..4973094) Escherichia coli JJ1886 17433648 YP_008724754.1 CDS P423_24185 NC_022648.1 4973437 4973661 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS1 4973437..4973661 Escherichia coli JJ1886 17433649 YP_008724755.1 CDS P423_24190 NC_022648.1 4973688 4973873 D Derived by automated computational analysis using gene prediction method: Protein Homology.; insB 4973688..4973873 Escherichia coli JJ1886 17433650 YP_008724756.1 CDS P423_24195 NC_022648.1 4973874 4974083 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS1 4973874..4974083 Escherichia coli JJ1886 17433651 YP_008724757.1 CDS P423_24200 NC_022648.1 4974656 4976014 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4974656..4976014 Escherichia coli JJ1886 17433652 YP_008724758.1 CDS P423_24205 NC_022648.1 4976253 4977638 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS66 complement(4976253..4977638) Escherichia coli JJ1886 17433653 YP_008724759.1 CDS P423_24210 NC_022648.1 4977688 4978035 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase complement(4977688..4978035) Escherichia coli JJ1886 17433654 YP_008724760.1 CDS P423_24215 NC_022648.1 4978032 4978421 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(4978032..4978421) Escherichia coli JJ1886 17433655 YP_008724761.1 CDS P423_24220 NC_022648.1 4978767 4979201 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4978767..4979201) Escherichia coli JJ1886 17433656 YP_008724762.1 CDS P423_24225 NC_022648.1 4979189 4979590 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4979189..4979590) Escherichia coli JJ1886 17433657 YP_008724763.1 CDS P423_24230 NC_022648.1 4979850 4980419 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4979850..4980419) Escherichia coli JJ1886 17433658 YP_008724764.1 CDS P423_24235 NC_022648.1 4980929 4981129 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4980929..4981129) Escherichia coli JJ1886 17433659 YP_008724765.1 CDS P423_24240 NC_022648.1 4981149 4981289 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; gene expression modulator complement(4981149..4981289) Escherichia coli JJ1886 17433660 YP_008724766.1 CDS P423_24245 NC_022648.1 4982072 4982278 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4982072..4982278 Escherichia coli JJ1886 17433661 YP_008724767.1 CDS P423_24250 NC_022648.1 4982374 4982976 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4982374..4982976 Escherichia coli JJ1886 17433662 YP_008724768.1 CDS P423_24255 NC_022648.1 4984177 4985094 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4984177..4985094 Escherichia coli JJ1886 17433663 YP_008724769.1 CDS P423_24260 NC_022648.1 4985179 4986051 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4985179..4986051 Escherichia coli JJ1886 17433664 YP_008724770.1 CDS P423_24265 NC_022648.1 4986424 4989270 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4986424..4989270 Escherichia coli JJ1886 17433665 YP_008724771.1 CDS P423_24270 NC_022648.1 4989341 4989499 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4989341..4989499 Escherichia coli JJ1886 17433666 YP_008724772.1 CDS P423_24275 NC_022648.1 4989654 4990472 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4989654..4990472 Escherichia coli JJ1886 17433667 YP_008724773.1 CDS P423_24280 NC_022648.1 4990814 4991287 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4990814..4991287 Escherichia coli JJ1886 17433668 YP_008724774.1 CDS P423_24285 NC_022648.1 4991303 4991779 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4991303..4991779 Escherichia coli JJ1886 17433669 YP_008724775.1 CDS P423_24290 NC_022648.1 4991842 4992063 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4991842..4992063 Escherichia coli JJ1886 17433670 YP_008724776.1 CDS P423_24295 NC_022648.1 4992063 4992176 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4992063..4992176 Escherichia coli JJ1886 17433671 YP_008724777.1 CDS P423_24300 NC_022648.1 4992226 4992594 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 4992226..4992594 Escherichia coli JJ1886 17433672 YP_008724778.1 CDS P423_24305 NC_022648.1 4992684 4993061 D Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin 4992684..4993061 Escherichia coli JJ1886 17433673 YP_008724779.1 CDS P423_24310 NC_022648.1 4993058 4993546 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4993058..4993546 Escherichia coli JJ1886 17433674 YP_008724780.1 CDS P423_24320 NC_022648.1 4994057 4994482 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 4994057..4994482 Escherichia coli JJ1886 17433676 YP_008724781.1 CDS P423_24325 NC_022648.1 4994479 4994829 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase 4994479..4994829 Escherichia coli JJ1886 17433677 YP_008724782.1 CDS P423_24330 NC_022648.1 4994902 4996473 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS66 4994902..4996473 Escherichia coli JJ1886 17433678 YP_008724783.1 CDS P423_24335 NC_022648.1 4996900 4997325 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 4996900..4997325 Escherichia coli JJ1886 17433679 YP_008724784.1 CDS P423_24340 NC_022648.1 4997867 4999489 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA methyltransferase 4997867..4999489 Escherichia coli JJ1886 17433680 YP_008724785.1 CDS P423_24345 NC_022648.1 4999482 5000672 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-cytosine methyltransferase 4999482..5000672 Escherichia coli JJ1886 17433681 YP_008724786.1 CDS P423_24350 NC_022648.1 5000685 5002424 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type II restriction endonuclease complement(5000685..5002424) Escherichia coli JJ1886 17433682 YP_008724787.1 CDS P423_24355 NC_022648.1 5002534 5003820 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction endonuclease complement(5002534..5003820) Escherichia coli JJ1886 17433683 YP_008724788.1 CDS P423_24360 NC_022648.1 5003813 5005888 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction endonuclease complement(5003813..5005888) Escherichia coli JJ1886 17433684 YP_008724789.1 CDS P423_24365 NC_022648.1 5006992 5007246 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl transferase complement(5006992..5007246) Escherichia coli JJ1886 17433685 YP_008724790.1 CDS P423_24370 NC_022648.1 5007253 5007420 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(5007253..5007420) Escherichia coli JJ1886 17433686 YP_008724791.1 CDS P423_24375 NC_022648.1 5008046 5009305 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; methylthioribose kinase 5008046..5009305 Escherichia coli JJ1886 17433687 YP_008724792.1 CDS P423_24380 NC_022648.1 5009315 5010430 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; methylthioribose-1-phosphate isomerase 5009315..5010430 Escherichia coli JJ1886 17433688 YP_008724793.1 CDS P423_24385 NC_022648.1 5010461 5011102 D catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fuculose phosphate aldolase 5010461..5011102 Escherichia coli JJ1886 17433689 YP_008724794.1 CDS P423_24390 NC_022648.1 5011206 5012210 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; multidrug DMT transporter permease 5011206..5012210 Escherichia coli JJ1886 17433690 YP_008724795.1 CDS P423_24395 NC_022648.1 5012251 5013237 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(5012251..5013237) Escherichia coli JJ1886 17433691 YP_008724796.1 CDS P423_24400 NC_022648.1 5013275 5013397 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(5013275..5013397) Escherichia coli JJ1886 17433692 YP_008724797.1 CDS P423_24405 NC_022648.1 5013584 5014933 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Gnt-II system L-idonate transporter IdnT complement(5013584..5014933) Escherichia coli JJ1886 17433693 YP_008724798.1 CDS P423_24410 NC_022648.1 5015040 5017007 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydratase complement(5015040..5017007) Escherichia coli JJ1886 17433694 YP_008724799.1 CDS P423_24415 NC_022648.1 5017018 5017953 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxy-galactonate aldolase complement(5017018..5017953) Escherichia coli JJ1886 17433695 YP_008724800.1 CDS P423_24420 NC_022648.1 5017928 5018716 R Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator complement(5017928..5018716) Escherichia coli JJ1886 17433696 YP_008724801.1 CDS P423_24425 NC_022648.1 5019019 5019801 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(5019019..5019801) Escherichia coli JJ1886 17433697 YP_008724802.1 CDS P423_24430 NC_022648.1 5019818 5020450 R Derived by automated computational analysis using gene prediction method: Protein Homology.; epimerase complement(5019818..5020450) Escherichia coli JJ1886 17433698 YP_008724803.1 CDS cmtB NC_022648.1 5020462 5020893 R TolM; with CmtA (IIBC), CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannitol transporter subunit IIA complement(5020462..5020893) Escherichia coli JJ1886 17433699 YP_008724804.1 CDS P423_24440 NC_022648.1 5021024 5021830 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sgc region protein SgcQ complement(5021024..5021830) Escherichia coli JJ1886 17433700 YP_008724805.1 CDS gatC NC_022648.1 5021843 5023156 R with GatAB forms a phosphoenolpyruvate-dependent sugar phosphotransferase transporter for galactitol; subunit IIC forms the translocation channel and contains the substrate binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS galactitol transporter subunit IIC complement(5021843..5023156) Escherichia coli JJ1886 17433701 YP_008724806.1 CDS P423_24450 NC_022648.1 5023168 5023446 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIB complement(5023168..5023446) Escherichia coli JJ1886 17433702 YP_008724807.1 CDS P423_24455 NC_022648.1 5023443 5024564 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase complement(5023443..5024564) Escherichia coli JJ1886 17433703 YP_008724808.1 CDS P423_24460 NC_022648.1 5024963 5025223 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Zn-finger protein complement(5024963..5025223) Escherichia coli JJ1886 17433704 YP_008724809.1 CDS P423_24465 NC_022648.1 5025351 5026097 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5025351..5026097) Escherichia coli JJ1886 17433705 YP_008724810.1 CDS P423_24475 NC_022648.1 5026712 5026969 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5026712..5026969) Escherichia coli JJ1886 17433707 YP_008724811.1 CDS P423_24480 NC_022648.1 5027227 5027349 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(5027227..5027349) Escherichia coli JJ1886 17433708 YP_008724812.1 CDS P423_24485 NC_022648.1 5027543 5028199 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase complement(5027543..5028199) Escherichia coli JJ1886 17433709 YP_008724813.1 CDS P423_24490 NC_022648.1 5028388 5028690 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(5028388..5028690) Escherichia coli JJ1886 17433710 YP_008724814.1 CDS P423_24495 NC_022648.1 5028873 5029859 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 5028873..5029859 Escherichia coli JJ1886 17433711 YP_008724815.1 CDS P423_24500 NC_022648.1 5030442 5031422 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 9-O-acetyl-N-acetylneuraminic acid deacetylase complement(5030442..5031422) Escherichia coli JJ1886 17433712 YP_008724816.1 CDS P423_24505 NC_022648.1 5031486 5032592 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminic acid mutarotase complement(5031486..5032592) Escherichia coli JJ1886 17433713 YP_008724817.1 CDS P423_24510 NC_022648.1 5032612 5033328 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminic acid channel protein complement(5032612..5033328) Escherichia coli JJ1886 17433714 YP_008724818.1 CDS P423_24515 NC_022648.1 5034782 5034982 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 5034782..5034982 Escherichia coli JJ1886 17433821 YP_008724819.1 CDS P423_24520 NC_022648.1 5035010 5036230 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(5035010..5036230) Escherichia coli JJ1886 17433716 YP_008724820.1 CDS P423_24525 NC_022648.1 5036249 5036767 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(5036249..5036767) Escherichia coli JJ1886 17433717 YP_008724821.1 CDS P423_24530 NC_022648.1 5036810 5037274 D inversion of on/off regulator of fimA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase 5036810..5037274 Escherichia coli JJ1886 17433718 YP_008724822.1 CDS P423_24535 NC_022648.1 5037752 5038348 D inversion of on/off regulator of fimA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase 5037752..5038348 Escherichia coli JJ1886 17433719 YP_008724823.1 CDS fimA NC_022648.1 5038827 5039375 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type-1 fimbrial protein subunit A 5038827..5039375 Escherichia coli JJ1886 17433720 YP_008724824.1 CDS P423_24545 NC_022648.1 5039440 5039979 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrin fimI 5039440..5039979 Escherichia coli JJ1886 17433721 YP_008724825.1 CDS P423_24550 NC_022648.1 5040016 5040741 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone FimC 5040016..5040741 Escherichia coli JJ1886 17433722 YP_008724826.1 CDS P423_24555 NC_022648.1 5040808 5043444 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimD 5040808..5043444 Escherichia coli JJ1886 17433723 YP_008724827.1 CDS P423_24560 NC_022648.1 5043454 5043984 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimF 5043454..5043984 Escherichia coli JJ1886 17433724 YP_008724828.1 CDS P423_24565 NC_022648.1 5043997 5044500 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimG 5043997..5044500 Escherichia coli JJ1886 17433725 YP_008724829.1 CDS P423_24570 NC_022648.1 5044520 5045422 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimH 5044520..5045422 Escherichia coli JJ1886 17433726 YP_008724830.1 CDS P423_24575 NC_022648.1 5045596 5046939 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Gnt-II system L-idonate transporter IdnT complement(5045596..5046939) Escherichia coli JJ1886 17433727 YP_008724831.1 CDS P423_24580 NC_022648.1 5047279 5048463 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannonate dehydratase 5047279..5048463 Escherichia coli JJ1886 17433728 YP_008724832.1 CDS P423_24585 NC_022648.1 5048544 5050004 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase 5048544..5050004 Escherichia coli JJ1886 17433729 YP_008724833.1 CDS P423_24590 NC_022648.1 5050026 5050220 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(5050026..5050220) Escherichia coli JJ1886 17433730 YP_008724834.1 CDS P423_24595 NC_022648.1 5050219 5050992 D regulates the expression of uxuBA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 5050219..5050992 Escherichia coli JJ1886 17433731 YP_008724835.1 CDS P423_24600 NC_022648.1 5051230 5051808 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(5051230..5051808) Escherichia coli JJ1886 17433732 YP_008724836.1 CDS iraD NC_022648.1 5052591 5052983 D inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication protein 5052591..5052983 Escherichia coli JJ1886 17433733 YP_008724837.1 CDS P423_24610 NC_022648.1 5052976 5053887 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(5052976..5053887) Escherichia coli JJ1886 17433734 YP_008724838.1 CDS P423_24615 NC_022648.1 5053952 5055124 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isoaspartyl dipeptidase complement(5053952..5055124) Escherichia coli JJ1886 17433735 YP_008724839.1 CDS P423_24620 NC_022648.1 5055137 5055598 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(5055137..5055598) Escherichia coli JJ1886 17433736 YP_008724840.1 CDS P423_24625 NC_022648.1 5055595 5056278 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(5055595..5056278) Escherichia coli JJ1886 17433737 YP_008724841.1 CDS P423_24630 NC_022648.1 5056528 5057082 D in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA 2'-phosphotransferase 5056528..5057082 Escherichia coli JJ1886 17433738 YP_008724842.1 CDS P423_24635 NC_022648.1 5057095 5058273 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5057095..5058273) Escherichia coli JJ1886 17433739 YP_008724843.1 CDS P423_24640 NC_022648.1 5058341 5059201 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5058341..5059201) Escherichia coli JJ1886 17433740 YP_008724844.1 CDS P423_24645 NC_022648.1 5059266 5059523 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5059266..5059523) Escherichia coli JJ1886 17433741 YP_008724845.1 CDS P423_24650 NC_022648.1 5059520 5060287 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5059520..5060287) Escherichia coli JJ1886 17433742 YP_008724846.1 CDS P423_24655 NC_022648.1 5060297 5061448 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5060297..5061448) Escherichia coli JJ1886 17433743 YP_008724847.1 CDS P423_24660 NC_022648.1 5061564 5062844 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(5061564..5062844) Escherichia coli JJ1886 17433744 YP_008724848.1 CDS P423_24665 NC_022648.1 5062885 5064117 R is involved in resistance to acriflavine, chloramphenicol, norfloxacin, ethidium bromide and TPP; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(5062885..5064117) Escherichia coli JJ1886 17433745 YP_008724849.1 CDS P423_24670 NC_022648.1 5064584 5065540 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase 5064584..5065540 Escherichia coli JJ1886 17433746 YP_008724850.1 CDS P423_24680 NC_022648.1 5065783 5067195 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GntR family transcriptional regulator complement(5065783..5067195) Escherichia coli JJ1886 17433748 YP_008724851.1 CDS P423_24685 NC_022648.1 5067372 5067536 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 5067372..5067536 Escherichia coli JJ1886 17433749 YP_008724852.1 CDS P423_24690 NC_022648.1 5067579 5067917 R involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease SymE complement(5067579..5067917) Escherichia coli JJ1886 17433750 YP_008724853.1 CDS P423_24695 NC_022648.1 5068132 5071395 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type I restriction-modification system subunit R complement(5068132..5071395) Escherichia coli JJ1886 17433751 YP_008724854.1 CDS P423_24700 NC_022648.1 5071490 5072794 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction endonuclease subunit S complement(5071490..5072794) Escherichia coli JJ1886 17433752 YP_008724855.1 CDS P423_24705 NC_022648.1 5072784 5074403 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA methyltransferase complement(5072784..5074403) Escherichia coli JJ1886 17433753 YP_008724856.1 CDS P423_24710 NC_022648.1 5074467 5075633 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction endonuclease complement(5074467..5075633) Escherichia coli JJ1886 17433754 YP_008724857.1 CDS P423_24715 NC_022648.1 5075836 5076117 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 5075836..5076117 Escherichia coli JJ1886 17433755 YP_008724858.1 CDS P423_24720 NC_022648.1 5076104 5076406 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 5076104..5076406 Escherichia coli JJ1886 17433756 YP_008724859.1 CDS P423_24725 NC_022648.1 5076440 5077396 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YjiA complement(5076440..5077396) Escherichia coli JJ1886 17433757 YP_008724860.1 CDS P423_24730 NC_022648.1 5077407 5077610 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5077407..5077610) Escherichia coli JJ1886 17433758 YP_008724861.1 CDS P423_24735 NC_022648.1 5077660 5079810 R Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation protein CstA complement(5077660..5079810) Escherichia coli JJ1886 17433759 YP_008724862.1 CDS P423_24740 NC_022648.1 5080187 5081851 D serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein 5080187..5081851 Escherichia coli JJ1886 17433760 YP_008724863.1 CDS P423_24745 NC_022648.1 5081900 5083261 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-galactonate transporter complement(5081900..5083261) Escherichia coli JJ1886 17433761 YP_008724864.1 CDS P423_24750 NC_022648.1 5083478 5084392 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(5083478..5084392) Escherichia coli JJ1886 17433762 YP_008724865.1 CDS P423_24755 NC_022648.1 5084531 5085553 D Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate oxidoreductase 5084531..5085553 Escherichia coli JJ1886 17433763 YP_008724866.1 CDS P423_24760 NC_022648.1 5085693 5087987 R catalyzes the transfer of phosphoglycerol to the glucan backbone; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerol transferase complement(5085693..5087987) Escherichia coli JJ1886 17433764 YP_008724867.1 CDS P423_24765 NC_022648.1 5088241 5088738 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5088241..5088738) Escherichia coli JJ1886 17433765 YP_008724868.1 CDS P423_24770 NC_022648.1 5088784 5089521 R acts to load the DnaB helicase onto the initiation site during DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication protein DnaC complement(5088784..5089521) Escherichia coli JJ1886 17433766 YP_008724869.1 CDS P423_24775 NC_022648.1 5089524 5090063 R This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosomal protein DnaI complement(5089524..5090063) Escherichia coli JJ1886 17433767 YP_008724870.1 CDS P423_24780 NC_022648.1 5090170 5090643 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5090170..5090643) Escherichia coli JJ1886 17433768 YP_008724871.1 CDS P423_24785 NC_022648.1 5090634 5091404 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(5090634..5091404) Escherichia coli JJ1886 17433769 YP_008724872.1 CDS P423_24790 NC_022648.1 5092025 5092750 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator 5092025..5092750 Escherichia coli JJ1886 17433770 YP_008724873.1 CDS P423_24795 NC_022648.1 5092762 5093385 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 5092762..5093385 Escherichia coli JJ1886 17433771 YP_008724874.1 CDS P423_24800 NC_022648.1 5093423 5094211 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric iron reductase involved in ferric hydroximate transport complement(5093423..5094211) Escherichia coli JJ1886 17433772 YP_008724875.1 CDS P423_24805 NC_022648.1 5094313 5094588 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 5094313..5094588 Escherichia coli JJ1886 17433773 YP_008724876.1 CDS rsmC NC_022648.1 5095149 5096180 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase complement(5095149..5096180) Escherichia coli JJ1886 17433777 YP_008724877.1 CDS P423_24830 NC_022648.1 5096283 5096696 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit psi 5096283..5096696 Escherichia coli JJ1886 17433780 YP_008724878.1 CDS rimI NC_022648.1 5096665 5097111 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine acetyltransferase 5096665..5097111 Escherichia coli JJ1886 17433781 YP_008724879.1 CDS P423_24840 NC_022648.1 5097126 5097803 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; dUMP phosphatase 5097126..5097803 Escherichia coli JJ1886 17433782 YP_008724880.1 CDS prfC NC_022648.1 5097894 5099483 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptide chain release factor 3 5097894..5099483 Escherichia coli JJ1886 17433783 YP_008724881.1 CDS P423_24850 NC_022648.1 5099876 5100481 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 5099876..5100481 Escherichia coli JJ1886 17433784 YP_008724882.1 CDS P423_24855 NC_022648.1 5100608 5100769 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 5100608..5100769 Escherichia coli JJ1886 17433785 YP_008724883.1 CDS P423_24860 NC_022648.1 5100891 5101964 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 5100891..5101964 Escherichia coli JJ1886 17433786 YP_008724884.1 CDS P423_24865 NC_022648.1 5101961 5102743 D Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribonuclease 5101961..5102743 Escherichia coli JJ1886 17433787 YP_008724885.1 CDS P423_24870 NC_022648.1 5103259 5104122 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5103259..5104122) Escherichia coli JJ1886 17433788 YP_008724886.1 CDS P423_24875 NC_022648.1 5104094 5105644 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(5104094..5105644) Escherichia coli JJ1886 17433789 YP_008724887.1 CDS P423_24880 NC_022648.1 5105696 5105797 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 5105696..5105797 Escherichia coli JJ1886 17433790 YP_008724888.1 CDS P423_24885 NC_022648.1 5105902 5106681 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribose-phosphate aldolase 5105902..5106681 Escherichia coli JJ1886 17433791 YP_008724889.1 CDS P423_24890 NC_022648.1 5106759 5108081 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidine phosphorylase 5106759..5108081 Escherichia coli JJ1886 17433792 YP_008724890.1 CDS P423_24895 NC_022648.1 5108133 5109356 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopentomutase 5108133..5109356 Escherichia coli JJ1886 17433793 YP_008724891.1 CDS deoD NC_022648.1 5109413 5110132 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; purine nucleoside phosphorylase 5109413..5110132 Escherichia coli JJ1886 17433794 YP_008724892.1 CDS P423_24905 NC_022648.1 5110299 5111630 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 5110299..5111630 Escherichia coli JJ1886 17433795 YP_008724893.1 CDS lplA NC_022648.1 5111631 5112647 R Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoate-protein ligase A complement(5111631..5112647) Escherichia coli JJ1886 17433796 YP_008724894.1 CDS P423_24915 NC_022648.1 5112675 5113319 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(5112675..5113319) Escherichia coli JJ1886 17433797 YP_008724895.1 CDS serB NC_022648.1 5113425 5114393 D catalyzes the formation of serine from O-phosphoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoserine phosphatase 5113425..5114393 Escherichia coli JJ1886 17433798 YP_008724896.1 CDS P423_24925 NC_022648.1 5114442 5115824 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RadA 5114442..5115824 Escherichia coli JJ1886 17433799 YP_008724897.1 CDS P423_24930 NC_022648.1 5115845 5117077 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 5115845..5117077 Escherichia coli JJ1886 17433800 YP_008724898.1 CDS P423_24935 NC_022648.1 5117198 5118865 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATP-binding protein complement(5117198..5118865) Escherichia coli JJ1886 17433801 YP_008724899.1 CDS P423_24940 NC_022648.1 5119072 5121009 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein transglycosylase 5119072..5121009 Escherichia coli JJ1886 17433802 YP_008724900.1 CDS P423_24945 NC_022648.1 5121099 5121425 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; Trp operon repressor 5121099..5121425 Escherichia coli JJ1886 17433803 YP_008724901.1 CDS yjjX NC_022648.1 5121504 5122040 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine/xanthosine triphosphatase complement(5121504..5122040) Escherichia coli JJ1886 17433804 YP_008724902.1 CDS P423_24955 NC_022648.1 5122083 5122730 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate mutase 5122083..5122730 Escherichia coli JJ1886 17433805 YP_008724903.1 CDS P423_24960 NC_022648.1 5122727 5123596 R AraC family; binds to the right arm of the replication origin oriC; Derived by automated computational analysis using gene prediction method: Protein Homology.; right origin-binding protein complement(5122727..5123596) Escherichia coli JJ1886 17433806 YP_008724904.1 CDS P423_24965 NC_022648.1 5123807 5124280 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 5123807..5124280 Escherichia coli JJ1886 17433807 YP_008724905.1 CDS P423_24970 NC_022648.1 5124293 5124982 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 5124293..5124982 Escherichia coli JJ1886 17433808 YP_008724906.1 CDS P423_24975 NC_022648.1 5124982 5126406 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 5124982..5126406 Escherichia coli JJ1886 17433809 YP_008724907.1 CDS P423_24980 NC_022648.1 5126464 5127816 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 5126464..5127816 Escherichia coli JJ1886 17433810 YP_008724908.1 CDS P423_24985 NC_022648.1 5127876 5128592 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(5127876..5128592) Escherichia coli JJ1886 17433811 YP_008724909.1 CDS P423_24990 NC_022648.1 5129228 5129914 D member of the SPOUT superfamily of methyltransferases; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA methyltransferase 5129228..5129914 Escherichia coli JJ1886 17433812 YP_008724910.1 CDS P423_25135 NC_022649.1 17 931 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; plasmid replication protein complement(17..931) Escherichia coli JJ1886 17433829 YP_008724911.1 CDS P423_25140 NC_022649.1 1130 1222 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1130..1222) Escherichia coli JJ1886 17433824 YP_008724912.1 CDS P423_25145 NC_022649.1 2668 2877 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2668..2877 Escherichia coli JJ1886 17433825 YP_008724913.1 CDS P423_25150 NC_022649.1 2943 3476 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2943..3476) Escherichia coli JJ1886 17433826 YP_008724914.1 CDS P423_25155 NC_022649.1 3479 4405 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; mobilization protein complement(3479..4405) Escherichia coli JJ1886 17433827 YP_008724915.1 CDS P423_25160 NC_022649.1 4582 4980 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4582..4980 Escherichia coli JJ1886 17433828 YP_008724916.1 CDS P423_25200 NC_022650.1 54638 550 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraG complement(join(54638..55956,1..550)) Escherichia coli JJ1886 17433907 YP_008724917.1 CDS P423_25205 NC_022650.1 615 770 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(615..770) Escherichia coli JJ1886 17433831 YP_008724918.1 CDS P423_25210 NC_022650.1 767 3379 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraI complement(767..3379) Escherichia coli JJ1886 17433832 YP_008724919.1 CDS P423_25215 NC_022650.1 3429 3788 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbJ complement(3429..3788) Escherichia coli JJ1886 17433833 YP_008724920.1 CDS P423_25220 NC_022650.1 4138 4572 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4138..4572 Escherichia coli JJ1886 17433834 YP_008724921.1 CDS P423_25225 NC_022650.1 4572 5357 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraL 4572..5357 Escherichia coli JJ1886 17433835 YP_008724922.1 CDS P423_25230 NC_022650.1 5357 5797 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraM 5357..5797 Escherichia coli JJ1886 17433836 YP_008724923.1 CDS P423_25235 NC_022650.1 5848 6081 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 5848..6081 Escherichia coli JJ1886 17433837 YP_008724924.1 CDS P423_25240 NC_022650.1 6414 7094 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(6414..7094) Escherichia coli JJ1886 17433838 YP_008724925.1 CDS P423_25245 NC_022650.1 7116 8129 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(7116..8129) Escherichia coli JJ1886 17433839 YP_008724926.1 CDS P423_25250 NC_022650.1 8126 8323 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(8126..8323) Escherichia coli JJ1886 17433840 YP_008724927.1 CDS P423_25255 NC_022650.1 8449 9462 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; plasmid stablization protein ParB complement(8449..9462) Escherichia coli JJ1886 17433841 YP_008724928.1 CDS P423_25260 NC_022650.1 9462 10226 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ParA ATPase complement(9462..10226) Escherichia coli JJ1886 17433842 YP_008724929.1 CDS P423_25265 NC_022650.1 10229 10582 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator complement(10229..10582) Escherichia coli JJ1886 17433843 YP_008724930.1 CDS P423_25270 NC_022650.1 10729 11619 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(10729..11619) Escherichia coli JJ1886 17433844 YP_008724931.1 CDS P423_25275 NC_022650.1 11621 12733 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protein klaB complement(11621..12733) Escherichia coli JJ1886 17433845 YP_008724932.1 CDS P423_25280 NC_022650.1 12730 13515 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(12730..13515) Escherichia coli JJ1886 17433846 YP_008724933.1 CDS P423_25285 NC_022650.1 13596 14069 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(13596..14069) Escherichia coli JJ1886 17433847 YP_008724934.1 CDS P423_25290 NC_022650.1 14157 14498 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(14157..14498) Escherichia coli JJ1886 17433848 YP_008724935.1 CDS P423_25295 NC_022650.1 14501 14878 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(14501..14878) Escherichia coli JJ1886 17433849 YP_008724936.1 CDS P423_25300 NC_022650.1 14914 15237 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(14914..15237) Escherichia coli JJ1886 17433850 YP_008724937.1 CDS P423_25305 NC_022650.1 15600 15860 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(15600..15860) Escherichia coli JJ1886 17433851 YP_008724938.1 CDS P423_25310 NC_022650.1 15861 16979 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protein klcB complement(15861..16979) Escherichia coli JJ1886 17433852 YP_008724939.1 CDS P423_25315 NC_022650.1 17027 17494 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; klcA complement(17027..17494) Escherichia coli JJ1886 17433853 YP_008724940.1 CDS P423_25320 NC_022650.1 17636 18142 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(17636..18142) Escherichia coli JJ1886 17433854 YP_008724941.1 CDS P423_25325 NC_022650.1 18562 18759 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(18562..18759) Escherichia coli JJ1886 17433855 YP_008724942.1 CDS P423_25330 NC_022650.1 18849 19433 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(18849..19433) Escherichia coli JJ1886 17433856 YP_008724943.1 CDS P423_25335 NC_022650.1 19430 19678 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(19430..19678) Escherichia coli JJ1886 17433857 YP_008724944.1 CDS P423_25340 NC_022650.1 19678 19986 R Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator complement(19678..19986) Escherichia coli JJ1886 17433858 YP_008724945.1 CDS P423_25345 NC_022650.1 19995 20294 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(19995..20294) Escherichia coli JJ1886 17433859 YP_008724946.1 CDS P423_25350 NC_022650.1 21361 22254 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(21361..22254) Escherichia coli JJ1886 17433860 YP_008724947.1 CDS P423_25355 NC_022650.1 22355 22726 R Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein complement(22355..22726) Escherichia coli JJ1886 17433861 YP_008724948.1 CDS P423_25360 NC_022650.1 22886 23236 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 22886..23236 Escherichia coli JJ1886 17433862 YP_008724949.1 CDS P423_25365 NC_022650.1 23490 24377 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbB 23490..24377 Escherichia coli JJ1886 17433863 YP_008724950.1 CDS P423_25370 NC_022650.1 24491 24874 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbC 24491..24874 Escherichia coli JJ1886 17433864 YP_008724951.1 CDS P423_25375 NC_022650.1 24931 25203 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein 24931..25203 Escherichia coli JJ1886 17433865 YP_008724952.1 CDS P423_25380 NC_022650.1 25200 27743 D type IV secretion system ATPase VirB4 family; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbE 25200..27743 Escherichia coli JJ1886 17433866 YP_008724953.1 CDS P423_25385 NC_022650.1 27740 28447 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbF 27740..28447 Escherichia coli JJ1886 17433867 YP_008724954.1 CDS P423_25390 NC_022650.1 28463 29353 D type IV secretion system VirB9/CagX family; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbG 28463..29353 Escherichia coli JJ1886 17433868 YP_008724955.1 CDS P423_25395 NC_022650.1 29356 29808 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 29356..29808 Escherichia coli JJ1886 17433869 YP_008724956.1 CDS P423_25400 NC_022650.1 29812 31206 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbI 29812..31206 Escherichia coli JJ1886 17433870 YP_008724957.1 CDS P423_25405 NC_022650.1 31219 31989 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbJ 31219..31989 Escherichia coli JJ1886 17433871 YP_008724958.1 CDS P423_25410 NC_022650.1 32002 32175 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 32002..32175 Escherichia coli JJ1886 17433872 YP_008724959.1 CDS P423_25415 NC_022650.1 32180 33733 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 32180..33733 Escherichia coli JJ1886 17433873 YP_008724960.1 CDS P423_25420 NC_022650.1 33744 34049 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 33744..34049 Escherichia coli JJ1886 17433874 YP_008724961.1 CDS P423_25425 NC_022650.1 34065 34835 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein 34065..34835 Escherichia coli JJ1886 17433875 YP_008724962.1 CDS P423_25430 NC_022650.1 34852 35538 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 34852..35538 Escherichia coli JJ1886 17433876 YP_008724963.1 CDS P423_25435 NC_022650.1 35982 36077 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 35982..36077 Escherichia coli JJ1886 17433877 YP_008724964.1 CDS P423_25440 NC_022650.1 36183 36554 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(36183..36554) Escherichia coli JJ1886 17433878 YP_008724965.1 CDS P423_25445 NC_022650.1 36572 36967 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(36572..36967) Escherichia coli JJ1886 17433879 YP_008724966.1 CDS P423_25450 NC_022650.1 36972 37292 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(36972..37292) Escherichia coli JJ1886 17433880 YP_008724967.1 CDS P423_25455 NC_022650.1 37292 37540 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(37292..37540) Escherichia coli JJ1886 17433881 YP_008724968.1 CDS P423_25460 NC_022650.1 37697 38200 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(37697..38200) Escherichia coli JJ1886 17433882 YP_008724969.1 CDS P423_25465 NC_022650.1 38200 38451 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(38200..38451) Escherichia coli JJ1886 17433883 YP_008724970.1 CDS P423_25470 NC_022650.1 38441 38764 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(38441..38764) Escherichia coli JJ1886 17433884 YP_008724971.1 CDS P423_25475 NC_022650.1 38754 39389 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; resolvase complement(38754..39389) Escherichia coli JJ1886 17433885 YP_008724972.1 CDS P423_25480 NC_022650.1 39420 39866 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(39420..39866) Escherichia coli JJ1886 17433886 YP_008724973.1 CDS P423_25485 NC_022650.1 39900 40406 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(39900..40406) Escherichia coli JJ1886 17433887 YP_008724974.1 CDS P423_25490 NC_022650.1 40426 40770 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(40426..40770) Escherichia coli JJ1886 17433888 YP_008724975.1 CDS P423_25495 NC_022650.1 40793 41272 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(40793..41272) Escherichia coli JJ1886 17433889 YP_008724976.1 CDS P423_25500 NC_022650.1 41529 41858 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(41529..41858) Escherichia coli JJ1886 17433890 YP_008724977.1 CDS P423_25505 NC_022650.1 42086 42970 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 42086..42970 Escherichia coli JJ1886 17433891 YP_008724978.1 CDS P423_25510 NC_022650.1 42973 43995 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 42973..43995 Escherichia coli JJ1886 17433892 YP_008724979.1 CDS P423_25515 NC_022650.1 43992 44240 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 43992..44240 Escherichia coli JJ1886 17433893 YP_008724980.1 CDS P423_25520 NC_022650.1 44298 44495 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(44298..44495) Escherichia coli JJ1886 17433894 YP_008724981.1 CDS P423_25525 NC_022650.1 44510 45124 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(44510..45124) Escherichia coli JJ1886 17433895 YP_008724982.1 CDS P423_25530 NC_022650.1 45260 45466 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 45260..45466 Escherichia coli JJ1886 17433896 YP_008724983.1 CDS P423_25535 NC_022650.1 45487 45936 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 45487..45936 Escherichia coli JJ1886 17433897 YP_008724984.1 CDS P423_25540 NC_022650.1 45978 46193 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; gene expression modulator complement(45978..46193) Escherichia coli JJ1886 17433898 YP_008724985.1 CDS P423_25545 NC_022650.1 46190 46648 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(46190..46648) Escherichia coli JJ1886 17433899 YP_008724986.1 CDS P423_25550 NC_022650.1 46726 47190 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(46726..47190) Escherichia coli JJ1886 17433900 YP_008724987.1 CDS P423_25555 NC_022650.1 47246 51205 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA primase complement(47246..51205) Escherichia coli JJ1886 17433901 YP_008724988.1 CDS P423_25560 NC_022650.1 51211 51396 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraD complement(51211..51396) Escherichia coli JJ1886 17433902 YP_008724989.1 CDS P423_25565 NC_022650.1 51412 53439 R decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase III complement(51412..53439) Escherichia coli JJ1886 17433903 YP_008724990.1 CDS P423_25570 NC_022650.1 53436 53762 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(53436..53762) Escherichia coli JJ1886 17433904 YP_008724991.1 CDS P423_25575 NC_022650.1 53759 54088 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(53759..54088) Escherichia coli JJ1886 17433905 YP_008724992.1 CDS P423_25580 NC_022650.1 54108 54641 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraF complement(54108..54641) Escherichia coli JJ1886 17433906 YP_008724993.1 CDS P423_25585 NC_022651.1 31 1602 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS66 complement(31..1602) Escherichia coli JJ1886 17434036 YP_008724994.1 CDS P423_25590 NC_022651.1 1675 2025 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase complement(1675..2025) Escherichia coli JJ1886 17433909 YP_008724995.1 CDS P423_25595 NC_022651.1 2022 2447 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(2022..2447) Escherichia coli JJ1886 17433910 YP_008724996.1 CDS P423_25600 NC_022651.1 2539 3660 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2539..3660 Escherichia coli JJ1886 17433911 YP_008724997.1 CDS P423_25605 NC_022651.1 3694 4206 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3694..4206) Escherichia coli JJ1886 17433912 YP_008724998.1 CDS P423_25610 NC_022651.1 4752 4970 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pirin 4752..4970 Escherichia coli JJ1886 17433913 YP_008724999.1 CDS P423_25615 NC_022651.1 4972 5277 D controlled cell death protein; post-segregation toxin; toxin addiction system; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pirin 4972..5277 Escherichia coli JJ1886 17433914 YP_008725000.1 CDS P423_25620 NC_022651.1 5278 6084 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; resolvase 5278..6084 Escherichia coli JJ1886 17433915 YP_008725001.1 CDS P423_25625 NC_022651.1 6858 7613 D RepE; RepFIB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; replication protein 6858..7613 Escherichia coli JJ1886 17433916 YP_008725002.1 CDS P423_25630 NC_022651.1 8201 9367 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosome partitioning protein ParA 8201..9367 Escherichia coli JJ1886 17433917 YP_008725003.1 CDS P423_25635 NC_022651.1 9367 10338 D SopB; Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosome partitioning protein ParB 9367..10338 Escherichia coli JJ1886 17433918 YP_008725004.1 CDS P423_25640 NC_022651.1 12491 13174 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; methylase 12491..13174 Escherichia coli JJ1886 17433919 YP_008725005.1 CDS P423_25645 NC_022651.1 13175 13396 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 13175..13396 Escherichia coli JJ1886 17433920 YP_008725006.1 CDS P423_25650 NC_022651.1 13410 13844 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 13410..13844 Escherichia coli JJ1886 17433921 YP_008725007.1 CDS P423_25655 NC_022651.1 13844 14671 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 13844..14671 Escherichia coli JJ1886 17433922 YP_008725008.1 CDS P423_25660 NC_022651.1 15088 15513 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 15088..15513 Escherichia coli JJ1886 17433923 YP_008725009.1 CDS P423_25665 NC_022651.1 15560 15982 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 15560..15982 Escherichia coli JJ1886 17433924 YP_008725010.1 CDS P423_25670 NC_022651.1 15979 16170 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 15979..16170 Escherichia coli JJ1886 17433925 YP_008725011.1 CDS P423_25675 NC_022651.1 17030 17185 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(17030..17185) Escherichia coli JJ1886 17433926 YP_008725012.1 CDS P423_25680 NC_022651.1 17481 18842 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hydrolase 17481..18842 Escherichia coli JJ1886 17433927 YP_008725013.1 CDS P423_25685 NC_022651.1 20316 20843 D binds to single stranded DNA and PriA helcase facilitate replication restart; Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein 20316..20843 Escherichia coli JJ1886 17434035 YP_008725014.1 CDS P423_25690 NC_022651.1 20899 21132 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 20899..21132 Escherichia coli JJ1886 17433929 YP_008725015.1 CDS P423_25695 NC_022651.1 21191 23149 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 21191..23149 Escherichia coli JJ1886 17433930 YP_008725016.1 CDS psiB NC_022651.1 23204 23638 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; recombinase 23204..23638 Escherichia coli JJ1886 17433931 YP_008725017.1 CDS P423_25705 NC_022651.1 23635 24354 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 23635..24354 Escherichia coli JJ1886 17433932 YP_008725018.1 CDS P423_25710 NC_022651.1 24634 24792 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 24634..24792 Escherichia coli JJ1886 17433933 YP_008725019.1 CDS P423_25715 NC_022651.1 25143 25847 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 25143..25847 Escherichia coli JJ1886 17433934 YP_008725020.1 CDS P423_25720 NC_022651.1 25942 27795 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase Tn3 25942..27795 Escherichia coli JJ1886 17433935 YP_008725021.1 CDS P423_25725 NC_022651.1 27894 28547 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 27894..28547 Escherichia coli JJ1886 17433936 YP_008725022.1 CDS P423_25730 NC_022651.1 28640 28897 D part of the MazF-MazE toxin-antitoxin system; conteracts MazF; Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin MazE 28640..28897 Escherichia coli JJ1886 17433937 YP_008725023.1 CDS P423_25735 NC_022651.1 28866 29231 D toxin of the ChpB-ChpS toxin-antitoxin system; Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin B 28866..29231 Escherichia coli JJ1886 17433938 YP_008725024.1 CDS P423_25740 NC_022651.1 29368 31080 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter complement(29368..31080) Escherichia coli JJ1886 17433939 YP_008725025.1 CDS P423_25745 NC_022651.1 31250 31954 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 31250..31954 Escherichia coli JJ1886 17433940 YP_008725026.1 CDS P423_25750 NC_022651.1 32586 33461 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; beta-lactamase complement(32586..33461) Escherichia coli JJ1886 17433941 YP_008725027.1 CDS P423_25755 NC_022651.1 33547 34239 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aminoglycoside 6-adenylyltransferase complement(33547..34239) Escherichia coli JJ1886 17433942 YP_008725028.1 CDS P423_25760 NC_022651.1 34245 34949 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(34245..34949) Escherichia coli JJ1886 17433943 YP_008725029.1 CDS P423_25765 NC_022651.1 35219 35776 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA invertase 35219..35776 Escherichia coli JJ1886 17433944 YP_008725030.1 CDS P423_25770 NC_022651.1 35959 36819 D hydrolyzes the beta-lactam bond in antibiotics such as the penicillins and cephalosporins; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; beta-lactamase 35959..36819 Escherichia coli JJ1886 17433945 YP_008725031.1 CDS P423_25775 NC_022651.1 37845 38702 R RepA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; replication protein complement(37845..38702) Escherichia coli JJ1886 17433946 YP_008725032.1 CDS P423_25780 NC_022651.1 38994 39254 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; replication protein complement(38994..39254) Escherichia coli JJ1886 17433947 YP_008725033.1 CDS P423_25785 NC_022651.1 39494 40084 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(39494..40084) Escherichia coli JJ1886 17433948 YP_008725034.1 CDS P423_25790 NC_022651.1 40122 40331 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; gene expression modulator complement(40122..40331) Escherichia coli JJ1886 17433949 YP_008725035.1 CDS P423_25795 NC_022651.1 40377 40838 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(40377..40838) Escherichia coli JJ1886 17433950 YP_008725036.1 CDS P423_25800 NC_022651.1 41037 41279 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(41037..41279) Escherichia coli JJ1886 17433951 YP_008725037.1 CDS P423_25805 NC_022651.1 41424 41984 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein FinO complement(41424..41984) Escherichia coli JJ1886 17433952 YP_008725038.1 CDS P423_25810 NC_022651.1 42087 42947 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(42087..42947) Escherichia coli JJ1886 17433953 YP_008725039.1 CDS P423_25815 NC_022651.1 43006 43752 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraX complement(43006..43752) Escherichia coli JJ1886 17433954 YP_008725040.1 CDS P423_25820 NC_022651.1 43772 47830 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraI complement(43772..47830) Escherichia coli JJ1886 17433955 YP_008725041.1 CDS P423_25825 NC_022651.1 47894 48598 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(47894..48598) Escherichia coli JJ1886 17433956 YP_008725042.1 CDS P423_25830 NC_022651.1 48635 49471 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraH complement(48635..49471) Escherichia coli JJ1886 17433957 YP_008725043.1 CDS P423_25835 NC_022651.1 49458 49850 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbF complement(49458..49850) Escherichia coli JJ1886 17433958 YP_008725044.1 CDS P423_25840 NC_022651.1 49831 50112 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbJ complement(49831..50112) Escherichia coli JJ1886 17433959 YP_008725045.1 CDS P423_25845 NC_022651.1 50102 50647 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbB complement(50102..50647) Escherichia coli JJ1886 17433960 YP_008725046.1 CDS P423_25850 NC_022651.1 50634 50918 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraQ complement(50634..50918) Escherichia coli JJ1886 17433961 YP_008725047.1 CDS P423_25855 NC_022651.1 51045 51383 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbA complement(51045..51383) Escherichia coli JJ1886 17433962 YP_008725048.1 CDS P423_25860 NC_022651.1 51399 52142 R type IV secretion system pilus assembly protein; similar to F plasmid TraF; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraF complement(51399..52142) Escherichia coli JJ1886 17433963 YP_008725049.1 CDS P423_25865 NC_022651.1 52135 52392 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbE complement(52135..52392) Escherichia coli JJ1886 17433964 YP_008725050.1 CDS P423_25870 NC_022651.1 52419 54227 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraN complement(52419..54227) Escherichia coli JJ1886 17433965 YP_008725051.1 CDS P423_25875 NC_022651.1 54224 54862 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbC complement(54224..54862) Escherichia coli JJ1886 17433966 YP_008725052.1 CDS P423_25880 NC_022651.1 54871 55176 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(54871..55176) Escherichia coli JJ1886 17433967 YP_008725053.1 CDS P423_25885 NC_022651.1 55206 56198 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraU complement(55206..56198) Escherichia coli JJ1886 17433968 YP_008725054.1 CDS P423_25890 NC_022651.1 56195 56827 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraW complement(56195..56827) Escherichia coli JJ1886 17433969 YP_008725055.1 CDS P423_25895 NC_022651.1 56824 57210 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbI complement(56824..57210) Escherichia coli JJ1886 17433970 YP_008725056.1 CDS P423_25900 NC_022651.1 57207 59834 R similar to VirB4; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraC complement(57207..59834) Escherichia coli JJ1886 17433971 YP_008725057.1 CDS P423_25905 NC_022651.1 59897 60001 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(59897..60001) Escherichia coli JJ1886 17433972 YP_008725058.1 CDS P423_25910 NC_022651.1 59994 60215 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(59994..60215) Escherichia coli JJ1886 17433973 YP_008725059.1 CDS P423_25915 NC_022651.1 60350 60865 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraV complement(60350..60865) Escherichia coli JJ1886 17433974 YP_008725060.1 CDS P423_25920 NC_022651.1 60862 61113 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbG complement(60862..61113) Escherichia coli JJ1886 17433975 YP_008725061.1 CDS P423_25925 NC_022651.1 61106 61426 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TrbD complement(61106..61426) Escherichia coli JJ1886 17433976 YP_008725062.1 CDS P423_25930 NC_022651.1 61413 61997 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraP complement(61413..61997) Escherichia coli JJ1886 17433977 YP_008725063.1 CDS P423_25935 NC_022651.1 61987 63414 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraB complement(61987..63414) Escherichia coli JJ1886 17433978 YP_008725064.1 CDS P423_25940 NC_022651.1 63414 64142 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraK complement(63414..64142) Escherichia coli JJ1886 17433979 YP_008725065.1 CDS P423_25945 NC_022651.1 64129 64695 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraE complement(64129..64695) Escherichia coli JJ1886 17433980 YP_008725066.1 CDS P423_25950 NC_022651.1 64717 65028 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraL complement(64717..65028) Escherichia coli JJ1886 17433981 YP_008725067.1 CDS P423_25955 NC_022651.1 65033 65395 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraA complement(65033..65395) Escherichia coli JJ1886 17433982 YP_008725068.1 CDS P423_25960 NC_022651.1 65429 65656 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraY complement(65429..65656) Escherichia coli JJ1886 17433983 YP_008725069.1 CDS P423_25965 NC_022651.1 65750 66436 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraJ complement(65750..66436) Escherichia coli JJ1886 17433984 YP_008725070.1 CDS P423_25970 NC_022651.1 66630 67013 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; conjugal transfer protein TraM complement(66630..67013) Escherichia coli JJ1886 17433985 YP_008725071.1 CDS P423_25975 NC_022651.1 67299 67946 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic transglycosylase 67299..67946 Escherichia coli JJ1886 17433986 YP_008725072.1 CDS P423_25980 NC_022651.1 68243 69064 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(68243..69064) Escherichia coli JJ1886 17433987 YP_008725073.1 CDS P423_25985 NC_022651.1 69185 69472 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(69185..69472) Escherichia coli JJ1886 17433988 YP_008725074.1 CDS P423_25990 NC_022651.1 70164 70868 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(70164..70868) Escherichia coli JJ1886 17433989 YP_008725075.1 CDS P423_25995 NC_022651.1 71148 71909 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NADH:quinone oxidoreductase 71148..71909 Escherichia coli JJ1886 17433990 YP_008725076.1 CDS P423_26000 NC_022651.1 72202 74142 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron permease 72202..74142 Escherichia coli JJ1886 17433991 YP_008725077.1 CDS P423_26005 NC_022651.1 74183 74710 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron transporter 74183..74710 Escherichia coli JJ1886 17433992 YP_008725078.1 CDS P423_26010 NC_022651.1 74814 76193 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 74814..76193 Escherichia coli JJ1886 17433993 YP_008725079.1 CDS P423_26015 NC_022651.1 76196 77479 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter permease 76196..77479 Escherichia coli JJ1886 17433994 YP_008725080.1 CDS P423_26020 NC_022651.1 77469 78599 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter permease 77469..78599 Escherichia coli JJ1886 17433995 YP_008725081.1 CDS P423_26025 NC_022651.1 78604 79299 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter ATP-binding protein 78604..79299 Escherichia coli JJ1886 17433996 YP_008725082.1 CDS P423_26030 NC_022651.1 79286 79771 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; thioredoxin 79286..79771 Escherichia coli JJ1886 17433997 YP_008725083.1 CDS P423_26035 NC_022651.1 79796 80281 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 79796..80281 Escherichia coli JJ1886 17433998 YP_008725084.1 CDS P423_26040 NC_022651.1 80403 80957 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphatase/inositol phosphatase 80403..80957 Escherichia coli JJ1886 17433999 YP_008725085.1 CDS P423_26045 NC_022651.1 80991 81695 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(80991..81695) Escherichia coli JJ1886 17434000 YP_008725086.1 CDS P423_26050 NC_022651.1 81672 82028 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase 81672..82028 Escherichia coli JJ1886 17434001 YP_008725087.1 CDS P423_26055 NC_022651.1 82998 83171 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 82998..83171 Escherichia coli JJ1886 17434002 YP_008725088.1 CDS P423_26060 NC_022651.1 83263 83556 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 83263..83556 Escherichia coli JJ1886 17434003 YP_008725089.1 CDS P423_26065 NC_022651.1 83615 84925 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter substrate-binding protein complement(83615..84925) Escherichia coli JJ1886 17434004 YP_008725090.1 CDS ugpC NC_022651.1 84918 85991 R part of the UgpABCE glycerol-3-phosphate uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate ABC transporter ATP-binding protein complement(84918..85991) Escherichia coli JJ1886 17434005 YP_008725091.1 CDS P423_26075 NC_022651.1 85997 86821 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3',5'-cyclic-nucleotide phosphodiesterase complement(85997..86821) Escherichia coli JJ1886 17434006 YP_008725092.1 CDS P423_26080 NC_022651.1 86832 87719 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter permease complement(86832..87719) Escherichia coli JJ1886 17434007 YP_008725093.1 CDS P423_26085 NC_022651.1 87709 88587 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter permease complement(87709..88587) Escherichia coli JJ1886 17434008 YP_008725094.1 CDS P423_26090 NC_022651.1 88718 88945 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(88718..88945) Escherichia coli JJ1886 17434009 YP_008725095.1 CDS P423_26095 NC_022651.1 88976 89158 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(88976..89158) Escherichia coli JJ1886 17434010 YP_008725096.1 CDS P423_26100 NC_022651.1 89132 89326 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 89132..89326 Escherichia coli JJ1886 17434011 YP_008725097.1 CDS P423_26105 NC_022651.1 89559 90449 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dihydrodipicolinate synthase 89559..90449 Escherichia coli JJ1886 17434012 YP_008725098.1 CDS P423_26110 NC_022651.1 90474 90854 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endoribonuclease 90474..90854 Escherichia coli JJ1886 17434013 YP_008725099.1 CDS P423_26115 NC_022651.1 90887 91852 D transports degraded pectin products into the bacterial cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxygluconate permease 90887..91852 Escherichia coli JJ1886 17434014 YP_008725100.1 CDS P423_26120 NC_022651.1 91898 92650 R Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator complement(91898..92650) Escherichia coli JJ1886 17434015 YP_008725101.1 CDS P423_26125 NC_022651.1 93261 93539 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; CopG family transcripitonal regulator 93261..93539 Escherichia coli JJ1886 17434016 YP_008725102.1 CDS P423_26130 NC_022651.1 93539 93814 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; plasmid stabilization protein 93539..93814 Escherichia coli JJ1886 17434017 YP_008725103.1 CDS P423_26135 NC_022651.1 93920 94213 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 93920..94213 Escherichia coli JJ1886 17434018 YP_008725104.1 CDS P423_26140 NC_022651.1 94409 95578 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(94409..95578) Escherichia coli JJ1886 17434019 YP_008725105.1 CDS P423_26145 NC_022651.1 96861 97364 D Derived by automated computational analysis using gene prediction method: Protein Homology.; insB 96861..97364 Escherichia coli JJ1886 17434020 YP_008725106.1 CDS P423_26150 NC_022651.1 97398 97562 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 97398..97562 Escherichia coli JJ1886 17434021 YP_008725107.1 CDS P423_26155 NC_022651.1 97618 98640 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; helicase UvrD complement(97618..98640) Escherichia coli JJ1886 17434022 YP_008725108.1 CDS P423_26160 NC_022651.1 98625 100196 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATP-dependent endonuclease complement(98625..100196) Escherichia coli JJ1886 17434023 YP_008725109.1 CDS P423_26165 NC_022651.1 100271 100687 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; twitching motility protein PilT complement(100271..100687) Escherichia coli JJ1886 17434024 YP_008725110.1 CDS P423_26170 NC_022651.1 100684 101082 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; AbrB family transcriptional regulator complement(100684..101082) Escherichia coli JJ1886 17434025 YP_008725111.1 CDS P423_26175 NC_022651.1 101083 101241 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 101083..101241 Escherichia coli JJ1886 17434026 YP_008725112.1 CDS P423_26180 NC_022651.1 101295 105089 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 101295..105089 Escherichia coli JJ1886 17434027 YP_008725113.1 CDS P423_26185 NC_022651.1 105134 105550 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; twitching motility protein PilT complement(105134..105550) Escherichia coli JJ1886 17434028 YP_008725114.1 CDS P423_26190 NC_022651.1 105547 105777 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; virulence factor complement(105547..105777) Escherichia coli JJ1886 17434029 YP_008725115.1 CDS P423_26195 NC_022651.1 106042 106542 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 106042..106542 Escherichia coli JJ1886 17434030 YP_008725116.1 CDS P423_26200 NC_022651.1 106555 107328 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 106555..107328 Escherichia coli JJ1886 17434031 YP_008725117.1 CDS P423_26205 NC_022651.1 107539 109110 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS66 complement(107539..109110) Escherichia coli JJ1886 17434032 YP_008725118.1 CDS P423_26210 NC_022651.1 109183 109533 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase complement(109183..109533) Escherichia coli JJ1886 17434033 YP_008725119.1 CDS P423_26215 NC_022651.1 109530 109955 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(109530..109955) Escherichia coli JJ1886 17434034 YP_008747581.1 CDS P423_25130 NC_022661.1 484 960 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RepA plasmid replication protein 484..960 Escherichia coli JJ1886 17457126 YP_008747582.1 CDS P423_25170 NC_022662.1 732 1607 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(732..1607) Escherichia coli JJ1886 17457133 YP_008747583.1 CDS P423_25175 NC_022662.1 1600 2652 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1600..2652) Escherichia coli JJ1886 17457128 YP_008747584.1 CDS P423_25180 NC_022662.1 2871 2984 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2871..2984) Escherichia coli JJ1886 17457129 YP_008747585.1 CDS P423_25185 NC_022662.1 3026 4591 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA polymerase complement(3026..4591) Escherichia coli JJ1886 17457130 YP_008747586.1 CDS P423_25190 NC_022662.1 4581 4937 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; mobilization protein complement(4581..4937) Escherichia coli JJ1886 17457131 YP_008747587.1 CDS P423_25195 NC_022662.1 4969 5160 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; regulatory protein 4969..5160 Escherichia coli JJ1886 17457132 P423_01080 tRNA P423_01080 NC_022648.1 242563 242639 D tRNA-Ile 242563..242639 Escherichia coli JJ1886 17429041 P423_01085 tRNA P423_01085 NC_022648.1 242682 242757 D tRNA-Ala 242682..242757 Escherichia coli JJ1886 17429042 P423_01100 tRNA P423_01100 NC_022648.1 246116 246192 D tRNA-Asp 246116..246192 Escherichia coli JJ1886 17429045 P423_01150 tRNA P423_01150 NC_022648.1 254341 254417 D tRNA-Asp 254341..254417 Escherichia coli JJ1886 17429055 P423_01475 tRNA P423_01475 NC_022648.1 314870 314945 D tRNA-Thr 314870..314945 Escherichia coli JJ1886 17429120 P423_02705 tRNA P423_02705 NC_022648.1 584335 584411 D tRNA-Arg 584335..584411 Escherichia coli JJ1886 17429366 P423_03245 tRNA P423_03245 NC_022648.1 703405 703479 R tRNA-Gln complement(703405..703479) Escherichia coli JJ1886 17429474 P423_03250 tRNA P423_03250 NC_022648.1 703517 703591 R tRNA-Gln complement(703517..703591) Escherichia coli JJ1886 17429475 P423_03255 tRNA P423_03255 NC_022648.1 703640 703716 R tRNA-Met complement(703640..703716) Escherichia coli JJ1886 17429476 P423_03260 tRNA P423_03260 NC_022648.1 703732 703806 R tRNA-Gln complement(703732..703806) Escherichia coli JJ1886 17429477 P423_03265 tRNA P423_03265 NC_022648.1 703841 703915 R tRNA-Gln complement(703841..703915) Escherichia coli JJ1886 17429478 P423_03270 tRNA P423_03270 NC_022648.1 703939 704023 R tRNA-Leu complement(703939..704023) Escherichia coli JJ1886 17429479 P423_03275 tRNA P423_03275 NC_022648.1 704034 704110 R tRNA-Met complement(704034..704110) Escherichia coli JJ1886 17429480 P423_03670 tRNA P423_03670 NC_022648.1 790135 790210 D tRNA-Lys 790135..790210 Escherichia coli JJ1886 17429559 P423_03675 tRNA P423_03675 NC_022648.1 790246 790321 D tRNA-Val 790246..790321 Escherichia coli JJ1886 17429560 P423_03680 tRNA P423_03680 NC_022648.1 790324 790399 D tRNA-Lys 790324..790399 Escherichia coli JJ1886 17429561 P423_03685 tRNA P423_03685 NC_022648.1 790451 790526 D tRNA-Val 790451..790526 Escherichia coli JJ1886 17429562 P423_03690 tRNA P423_03690 NC_022648.1 790530 790605 D tRNA-Lys 790530..790605 Escherichia coli JJ1886 17429563 P423_03695 tRNA P423_03695 NC_022648.1 790654 790729 D tRNA-Lys 790654..790729 Escherichia coli JJ1886 17429564 P423_03700 tRNA P423_03700 NC_022648.1 790763 790838 D tRNA-Lys 790763..790838 Escherichia coli JJ1886 17429565 P423_04395 tRNA P423_04395 NC_022648.1 932360 932447 R tRNA-Ser complement(932360..932447) Escherichia coli JJ1886 17429704 P423_05335 tRNA P423_05335 NC_022648.1 1105941 1106028 R tRNA-Ser complement(1105941..1106028) Escherichia coli JJ1886 17429892 P423_05575 tRNA P423_05575 NC_022648.1 1157953 1158040 R tRNA-Ser complement(1157953..1158040) Escherichia coli JJ1886 17429940 P423_06965 tRNA P423_06965 NC_022648.1 1410620 1410704 R tRNA-Tyr complement(1410620..1410704) Escherichia coli JJ1886 17430217 P423_07205 tRNA P423_07205 NC_022648.1 1452450 1452525 D tRNA-Met 1452450..1452525 Escherichia coli JJ1886 17430265 P423_07210 tRNA P423_07210 NC_022648.1 1452626 1452702 D tRNA-Arg 1452626..1452702 Escherichia coli JJ1886 17430266 P423_08900 tRNA P423_08900 NC_022648.1 1811338 1811414 D tRNA-Val 1811338..1811414 Escherichia coli JJ1886 17430603 P423_08905 tRNA P423_08905 NC_022648.1 1811419 1811495 D tRNA-Val 1811419..1811495 Escherichia coli JJ1886 17430604 P423_10400 tRNA P423_10400 NC_022648.1 2089390 2089476 R tRNA-Leu complement(2089390..2089476) Escherichia coli JJ1886 17430902 P423_10405 tRNA P423_10405 NC_022648.1 2089489 2089562 R tRNA-Cys complement(2089489..2089562) Escherichia coli JJ1886 17430903 P423_10410 tRNA P423_10410 NC_022648.1 2089616 2089691 R tRNA-Gly complement(2089616..2089691) Escherichia coli JJ1886 17430904 P423_10900 tRNA P423_10900 NC_022648.1 2169720 2169796 R tRNA-Arg complement(2169720..2169796) Escherichia coli JJ1886 17431002 P423_10905 tRNA P423_10905 NC_022648.1 2169897 2169972 R tRNA-Met complement(2169897..2169972) Escherichia coli JJ1886 17431003 P423_11015 tRNA P423_11015 NC_022648.1 2183056 2183145 R tRNA-Ser complement(2183056..2183145) Escherichia coli JJ1886 17431025 P423_11025 tRNA P423_11025 NC_022648.1 2184137 2184212 D tRNA-Asn 2184137..2184212 Escherichia coli JJ1886 17431027 P423_11125 tRNA P423_11125 NC_022648.1 2224029 2224104 R tRNA-Asn complement(2224029..2224104) Escherichia coli JJ1886 17431047 P423_11135 tRNA P423_11135 NC_022648.1 2225853 2225928 D tRNA-Asn 2225853..2225928 Escherichia coli JJ1886 17431049 P423_11150 tRNA P423_11150 NC_022648.1 2228262 2228337 D tRNA-Asn 2228262..2228337 Escherichia coli JJ1886 17431052 P423_12300 tRNA P423_12300 NC_022648.1 2487001 2487077 D tRNA-Pro 2487001..2487077 Escherichia coli JJ1886 17431281 P423_13065 tRNA P423_13065 NC_022648.1 2656901 2656975 D tRNA-Arg 2656901..2656975 Escherichia coli JJ1886 17431434 P423_13300 tRNA P423_13300 NC_022648.1 2711196 2711271 R tRNA-Ala complement(2711196..2711271) Escherichia coli JJ1886 17431481 P423_13305 tRNA P423_13305 NC_022648.1 2711311 2711386 R tRNA-Ala complement(2711311..2711386) Escherichia coli JJ1886 17431482 P423_13325 tRNA P423_13325 NC_022648.1 2714085 2714160 D tRNA-Val 2714085..2714160 Escherichia coli JJ1886 17431486 P423_13330 tRNA P423_13330 NC_022648.1 2714205 2714280 D tRNA-Val 2714205..2714280 Escherichia coli JJ1886 17431487 P423_13335 tRNA P423_13335 NC_022648.1 2714327 2714402 D tRNA-Val 2714327..2714402 Escherichia coli JJ1886 17431488 P423_13340 tRNA P423_13340 NC_022648.1 2714407 2714482 D tRNA-Lys 2714407..2714482 Escherichia coli JJ1886 17431489 P423_14165 tRNA P423_14165 NC_022648.1 2904045 2904120 R tRNA-Glu complement(2904045..2904120) Escherichia coli JJ1886 17431653 P423_14740 tRNA P423_14740 NC_022648.1 3007719 3007795 R tRNA-Arg complement(3007719..3007795) Escherichia coli JJ1886 17431767 P423_14745 tRNA P423_14745 NC_022648.1 3007859 3007935 R tRNA-Arg complement(3007859..3007935) Escherichia coli JJ1886 17431768 P423_14750 tRNA P423_14750 NC_022648.1 3007998 3008074 R tRNA-Arg complement(3007998..3008074) Escherichia coli JJ1886 17431769 P423_14755 tRNA P423_14755 NC_022648.1 3008139 3008215 R tRNA-Arg complement(3008139..3008215) Escherichia coli JJ1886 17431770 P423_14760 tRNA P423_14760 NC_022648.1 3008219 3008311 R tRNA-Ser complement(3008219..3008311) Escherichia coli JJ1886 17431771 P423_15380 tRNA P423_15380 NC_022648.1 3132298 3132374 D tRNA-Met 3132298..3132374 Escherichia coli JJ1886 17431895 P423_15385 tRNA P423_15385 NC_022648.1 3132408 3132484 D tRNA-Met 3132408..3132484 Escherichia coli JJ1886 17431896 P423_15390 tRNA P423_15390 NC_022648.1 3132518 3132594 D tRNA-Met 3132518..3132594 Escherichia coli JJ1886 17431897 P423_15730 tRNA P423_15730 NC_022648.1 3222228 3222301 R tRNA-Gly complement(3222228..3222301) Escherichia coli JJ1886 17431965 P423_16280 tRNA P423_16280 NC_022648.1 3336265 3336340 D tRNA-Phe 3336265..3336340 Escherichia coli JJ1886 17432074 P423_17340 tRNA P423_17340 NC_022648.1 3563205 3563280 D tRNA-Met 3563205..3563280 Escherichia coli JJ1886 17432285 P423_17820 tRNA P423_17820 NC_022648.1 3660925 3661001 R tRNA-Met complement(3660925..3661001) Escherichia coli JJ1886 17432381 P423_17835 tRNA P423_17835 NC_022648.1 3664782 3664868 R tRNA-Leu complement(3664782..3664868) Escherichia coli JJ1886 17432384 P423_18335 tRNA P423_18335 NC_022648.1 3764252 3764327 R tRNA-Thr complement(3764252..3764327) Escherichia coli JJ1886 17432484 P423_18350 tRNA P423_18350 NC_022648.1 3767646 3767721 R tRNA-Ala complement(3767646..3767721) Escherichia coli JJ1886 17432487 P423_18355 tRNA P423_18355 NC_022648.1 3767764 3767840 R tRNA-Ile complement(3767764..3767840) Escherichia coli JJ1886 17432488 P423_19740 tRNA P423_19740 NC_022648.1 4045916 4045992 R tRNA-Pro complement(4045916..4045992) Escherichia coli JJ1886 17432763 P423_20335 tRNA P423_20335 NC_022648.1 4176819 4176913 D tRNA-Sec 4176819..4176913 Escherichia coli JJ1886 17432881 P423_20830 tRNA P423_20830 NC_022648.1 4281929 4282004 D tRNA-Glu 4281929..4282004 Escherichia coli JJ1886 17432980 P423_20845 tRNA P423_20845 NC_022648.1 4285374 4285450 D tRNA-Asp 4285374..4285450 Escherichia coli JJ1886 17432983 P423_20850 tRNA P423_20850 NC_022648.1 4285459 4285534 D tRNA-Trp 4285459..4285534 Escherichia coli JJ1886 17432984 P423_21010 tRNA P423_21010 NC_022648.1 4320003 4320079 D tRNA-Arg 4320003..4320079 Escherichia coli JJ1886 17433016 P423_21015 tRNA P423_21015 NC_022648.1 4320138 4320213 D tRNA-His 4320138..4320213 Escherichia coli JJ1886 17433017 P423_21020 tRNA P423_21020 NC_022648.1 4320234 4320320 D tRNA-Leu 4320234..4320320 Escherichia coli JJ1886 17433018 P423_21025 tRNA P423_21025 NC_022648.1 4320363 4320439 D tRNA-Pro 4320363..4320439 Escherichia coli JJ1886 17433019 P423_21400 tRNA P423_21400 NC_022648.1 4396424 4396499 D tRNA-Glu 4396424..4396499 Escherichia coli JJ1886 17433094 P423_22015 tRNA P423_22015 NC_022648.1 4525462 4525538 D tRNA-Ile 4525462..4525538 Escherichia coli JJ1886 17433217 P423_22020 tRNA P423_22020 NC_022648.1 4525581 4525656 D tRNA-Ala 4525581..4525656 Escherichia coli JJ1886 17433218 P423_22050 tRNA P423_22050 NC_022648.1 4532427 4532502 D tRNA-Thr 4532427..4532502 Escherichia coli JJ1886 17433224 P423_22055 tRNA P423_22055 NC_022648.1 4532511 4532595 D tRNA-Tyr 4532511..4532595 Escherichia coli JJ1886 17433225 P423_22060 tRNA P423_22060 NC_022648.1 4532712 4532786 D tRNA-Gly 4532712..4532786 Escherichia coli JJ1886 17433226 P423_22065 tRNA P423_22065 NC_022648.1 4532793 4532868 D tRNA-Thr 4532793..4532868 Escherichia coli JJ1886 17433227 P423_22210 tRNA P423_22210 NC_022648.1 4565747 4565822 D tRNA-Glu 4565747..4565822 Escherichia coli JJ1886 17433256 P423_23040 tRNA P423_23040 NC_022648.1 4757993 4758068 R tRNA-Phe complement(4757993..4758068) Escherichia coli JJ1886 17433422 P423_23190 tRNA P423_23190 NC_022648.1 4787226 4787301 D tRNA-Gly 4787226..4787301 Escherichia coli JJ1886 17433452 P423_23195 tRNA P423_23195 NC_022648.1 4787338 4787413 D tRNA-Gly 4787338..4787413 Escherichia coli JJ1886 17433453 P423_23200 tRNA P423_23200 NC_022648.1 4787449 4787524 D tRNA-Gly 4787449..4787524 Escherichia coli JJ1886 17433454 P423_23740 tRNA P423_23740 NC_022648.1 4893888 4893972 D tRNA-Leu 4893888..4893972 Escherichia coli JJ1886 17433562 P423_24810 tRNA P423_24810 NC_022648.1 5094627 5094713 R tRNA-Leu complement(5094627..5094713) Escherichia coli JJ1886 17433774 P423_24815 tRNA P423_24815 NC_022648.1 5094748 5094834 R tRNA-Leu complement(5094748..5094834) Escherichia coli JJ1886 17433775 P423_24820 tRNA P423_24820 NC_022648.1 5094863 5094949 R tRNA-Leu complement(5094863..5094949) Escherichia coli JJ1886 17433776 P423_01075 rRNA P423_01075 NC_022648.1 240954 242494 D 16S ribosomal RNA 240954..242494 Escherichia coli JJ1886 17429040 P423_01090 rRNA P423_01090 NC_022648.1 242931 245855 D 23S ribosomal RNA 242931..245855 Escherichia coli JJ1886 17429043 P423_01095 rRNA P423_01095 NC_022648.1 245946 246061 D 5S ribosomal RNA 245946..246061 Escherichia coli JJ1886 17429044 P423_14155 rRNA P423_14155 NC_022648.1 2900730 2900845 R 5S ribosomal RNA complement(2900730..2900845) Escherichia coli JJ1886 17431651 P423_14160 rRNA P423_14160 NC_022648.1 2900936 2903860 R 23S ribosomal RNA complement(2900936..2903860) Escherichia coli JJ1886 17431652 P423_14170 rRNA P423_14170 NC_022648.1 2904206 2905747 R 16S ribosomal RNA complement(2904206..2905747) Escherichia coli JJ1886 17431654 P423_18330 rRNA P423_18330 NC_022648.1 3764097 3764212 R 5S ribosomal RNA complement(3764097..3764212) Escherichia coli JJ1886 17432483 P423_18340 rRNA P423_18340 NC_022648.1 3764342 3764457 R 5S ribosomal RNA complement(3764342..3764457) Escherichia coli JJ1886 17432485 P423_18345 rRNA P423_18345 NC_022648.1 3764548 3767472 R 23S ribosomal RNA complement(3764548..3767472) Escherichia coli JJ1886 17432486 P423_18360 rRNA P423_18360 NC_022648.1 3767909 3769449 R 16S ribosomal RNA complement(3767909..3769449) Escherichia coli JJ1886 17432489 P423_20825 rRNA P423_20825 NC_022648.1 4280302 4281843 D 16S ribosomal RNA 4280302..4281843 Escherichia coli JJ1886 17432979 P423_20835 rRNA P423_20835 NC_022648.1 4282189 4285113 D 23S ribosomal RNA 4282189..4285113 Escherichia coli JJ1886 17432981 P423_20840 rRNA P423_20840 NC_022648.1 4285204 4285319 D 5S ribosomal RNA 4285204..4285319 Escherichia coli JJ1886 17432982 P423_21395 rRNA P423_21395 NC_022648.1 4394797 4396338 D 16S ribosomal RNA 4394797..4396338 Escherichia coli JJ1886 17433093 P423_21405 rRNA P423_21405 NC_022648.1 4396684 4399608 D 23S ribosomal RNA 4396684..4399608 Escherichia coli JJ1886 17433095 P423_21410 rRNA P423_21410 NC_022648.1 4399699 4399814 D 5S ribosomal RNA 4399699..4399814 Escherichia coli JJ1886 17433096 P423_22010 rRNA P423_22010 NC_022648.1 4523852 4525393 D 16S ribosomal RNA 4523852..4525393 Escherichia coli JJ1886 17433216 P423_22025 rRNA P423_22025 NC_022648.1 4525830 4528754 D 23S ribosomal RNA 4525830..4528754 Escherichia coli JJ1886 17433219 P423_22030 rRNA P423_22030 NC_022648.1 4528845 4528960 D 5S ribosomal RNA 4528845..4528960 Escherichia coli JJ1886 17433220 P423_22205 rRNA P423_22205 NC_022648.1 4564120 4565661 D 16S ribosomal RNA 4564120..4565661 Escherichia coli JJ1886 17433255 P423_22215 rRNA P423_22215 NC_022648.1 4566007 4568931 D 23S ribosomal RNA 4566007..4568931 Escherichia coli JJ1886 17433257 P423_22220 rRNA P423_22220 NC_022648.1 4569022 4569137 D 5S ribosomal RNA 4569022..4569137 Escherichia coli JJ1886 17433258