-- dump date   	20140619_082850
-- class       	Genbank::Contig
-- table       	contig
-- table       	main
-- field 1	id
-- field 2	date
-- field 3	dblink
-- field 4	file
-- field 5	form
-- field 6	genbank_file
-- field 7	length
-- field 8	organism
-- field 9	reference
-- field 10	seq_dir
-- field 11	taxid
-- field 12	taxo_group
-- field 13	type
-- header
-- id	date	dblink	file	form	genbank_file	length	organism	reference	seq_dir	taxid	taxo_group	type
NC_007779.1	27-AUG-2013	Project: 161931 BioProject: PRJNA161931	NC_007779.1.raw	circular	NC_007779.gbk	4646332	Escherichia coli str. K-12 substr. W3110	1 Chaudhuri,R.R., Glasner,J.D., Horiuchi,T., Keseler,I.M., Kosuge,T.,1 Chaudhuri,R.R., Glasner,J.D., Horiuchi,T., Keseler,I.M., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. 3rd, Rudd,K.E., Serres,M.H.,1 Chaudhuri,R.R., Glasner,J.D., Horiuchi,T., Keseler,I.M., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. 3rd, Rudd,K.E., Serres,M.H., Thomas,G.H., Thomson,N.R., Wishart,D. and Wanner,B.L.1 Chaudhuri,R.R., Glasner,J.D., Horiuchi,T., Keseler,I.M., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. 3rd, Rudd,K.E., Serres,M.H., Thomas,G.H., Thomson,N.R., Wishart,D. and Wanner,B.L. snapshot--20052  (bases 1 to 4646332) Ohtsubo,E., Baba,T., Wanner,B.L., Mori,H. and Horiuchi,T.2  (bases 1 to 4646332) Ohtsubo,E., Baba,T., Wanner,B.L., Mori,H. and Horiuchi,T. MG1655 and W31103 Itoh,T., Kimura,S., Kitagawa,M., Makino,K., Miki,T., Mitsuhashi,N.,3 Itoh,T., Kimura,S., Kitagawa,M., Makino,K., Miki,T., Mitsuhashi,N., Mizobuchi,K., Mori,H., Nakade,S., Nakamura,Y., Nashimoto,H.,3 Itoh,T., Kimura,S., Kitagawa,M., Makino,K., Miki,T., Mitsuhashi,N., Mizobuchi,K., Mori,H., Nakade,S., Nakamura,Y., Nashimoto,H., Oshima,T., Oyama,S., Saito,N., Sampei,G., Satoh,Y.,3 Itoh,T., Kimura,S., Kitagawa,M., Makino,K., Miki,T., Mitsuhashi,N., Mizobuchi,K., Mori,H., Nakade,S., Nakamura,Y., Nashimoto,H., Oshima,T., Oyama,S., Saito,N., Sampei,G., Satoh,Y., Sivasundaram,S., Tagami,H., Takahashi,H., Takeda,J., Takemoto,K.,3 Itoh,T., Kimura,S., Kitagawa,M., Makino,K., Miki,T., Mitsuhashi,N., Mizobuchi,K., Mori,H., Nakade,S., Nakamura,Y., Nashimoto,H., Oshima,T., Oyama,S., Saito,N., Sampei,G., Satoh,Y., Sivasundaram,S., Tagami,H., Takahashi,H., Takeda,J., Takemoto,K., Uehara,K., Wada,C., Yamagata,S. and Horiuchi,T.3 Itoh,T., Kimura,S., Kitagawa,M., Makino,K., Miki,T., Mitsuhashi,N., Mizobuchi,K., Mori,H., Nakade,S., Nakamura,Y., Nashimoto,H., Oshima,T., Oyama,S., Saito,N., Sampei,G., Satoh,Y., Sivasundaram,S., Tagami,H., Takahashi,H., Takeda,J., Takemoto,K., Uehara,K., Wada,C., Yamagata,S. and Horiuchi,T. coli -K12 genome corresponding to 50.0-68.8 min on the linkage map3 Itoh,T., Kimura,S., Kitagawa,M., Makino,K., Miki,T., Mitsuhashi,N., Mizobuchi,K., Mori,H., Nakade,S., Nakamura,Y., Nashimoto,H., Oshima,T., Oyama,S., Saito,N., Sampei,G., Satoh,Y., Sivasundaram,S., Tagami,H., Takahashi,H., Takeda,J., Takemoto,K., Uehara,K., Wada,C., Yamagata,S. and Horiuchi,T. coli -K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features4 Kasai,H., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T.,4 Kasai,H., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S.,4 Kasai,H., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S., Nakamura,Y., Nashimoto,H., Nishio,Y., Oshima,T., Saito,N.,4 Kasai,H., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S., Nakamura,Y., Nashimoto,H., Nishio,Y., Oshima,T., Saito,N., Sampei,G., Seki,Y., Sivasundaram,S., Tagami,H., Takeda,J.,4 Kasai,H., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S., Nakamura,Y., Nashimoto,H., Nishio,Y., Oshima,T., Saito,N., Sampei,G., Seki,Y., Sivasundaram,S., Tagami,H., Takeda,J., Takemoto,K., Wada,C., Yamamoto,Y. and Horiuchi,T.4 Kasai,H., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S., Nakamura,Y., Nashimoto,H., Nishio,Y., Oshima,T., Saito,N., Sampei,G., Seki,Y., Sivasundaram,S., Tagami,H., Takeda,J., Takemoto,K., Wada,C., Yamamoto,Y. and Horiuchi,T. corresponding to the 40.1-50.0 min region on the linkage map5 Kasai,H., Kashimoto,K., Kimura,S., Kitakawa,M., Kitagawa,M.,5 Kasai,H., Kashimoto,K., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K.,5 Kasai,H., Kashimoto,K., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S., Nakamura,Y., Nashimoto,H., Nishio,Y., Oshima,T.,5 Kasai,H., Kashimoto,K., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S., Nakamura,Y., Nashimoto,H., Nishio,Y., Oshima,T., Saito,N., Sampei,G., Seki,Y., Sivasundaram,S., Tagami,H.,5 Kasai,H., Kashimoto,K., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S., Nakamura,Y., Nashimoto,H., Nishio,Y., Oshima,T., Saito,N., Sampei,G., Seki,Y., Sivasundaram,S., Tagami,H., Takeda,J., Takemoto,K., Takeuchi,Y., Wada,C., Yamamoto,Y. and5 Kasai,H., Kashimoto,K., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S., Nakamura,Y., Nashimoto,H., Nishio,Y., Oshima,T., Saito,N., Sampei,G., Seki,Y., Sivasundaram,S., Tagami,H., Takeda,J., Takemoto,K., Takeuchi,Y., Wada,C., Yamamoto,Y. and Horiuchi,T.5 Kasai,H., Kashimoto,K., Kimura,S., Kitakawa,M., Kitagawa,M., Makino,K., Miki,T., Mizobuchi,K., Mori,H., Mori,T., Motomura,K., Nakade,S., Nakamura,Y., Nashimoto,H., Nishio,Y., Oshima,T., Saito,N., Sampei,G., Seki,Y., Sivasundaram,S., Tagami,H., Takeda,J., Takemoto,K., Takeuchi,Y., Wada,C., Yamamoto,Y. and Horiuchi,T. corresponding to the 28.0-40.1 min region on the linkage map6 and genomic disruption7 Ikemoto,K., Inada,T., Itoh,T., Kajihara,M., Kanai,K., Kashimoto,K.,7 Ikemoto,K., Inada,T., Itoh,T., Kajihara,M., Kanai,K., Kashimoto,K., Kimura,S., Kitagawa,M., Makino,K., Masuda,S., Miki,T.,7 Ikemoto,K., Inada,T., Itoh,T., Kajihara,M., Kanai,K., Kashimoto,K., Kimura,S., Kitagawa,M., Makino,K., Masuda,S., Miki,T., Mizobuchi,K., Mori,H., Motomura,K., Nakamura,Y., Nashimoto,H.,7 Ikemoto,K., Inada,T., Itoh,T., Kajihara,M., Kanai,K., Kashimoto,K., Kimura,S., Kitagawa,M., Makino,K., Masuda,S., Miki,T., Mizobuchi,K., Mori,H., Motomura,K., Nakamura,Y., Nashimoto,H., Nishio,Y., Saito,N., Sampei,G., Seki,Y., Tagami,H., Takemoto,K.,7 Ikemoto,K., Inada,T., Itoh,T., Kajihara,M., Kanai,K., Kashimoto,K., Kimura,S., Kitagawa,M., Makino,K., Masuda,S., Miki,T., Mizobuchi,K., Mori,H., Motomura,K., Nakamura,Y., Nashimoto,H., Nishio,Y., Saito,N., Sampei,G., Seki,Y., Tagami,H., Takemoto,K., Wada,C., Yamamoto,Y., Yano,M. and Horiuchi,T.7 Ikemoto,K., Inada,T., Itoh,T., Kajihara,M., Kanai,K., Kashimoto,K., Kimura,S., Kitagawa,M., Makino,K., Masuda,S., Miki,T., Mizobuchi,K., Mori,H., Motomura,K., Nakamura,Y., Nashimoto,H., Nishio,Y., Saito,N., Sampei,G., Seki,Y., Tagami,H., Takemoto,K., Wada,C., Yamamoto,Y., Yano,M. and Horiuchi,T. corresponding to the 12.7-28.0 min region on the linkage map8 the 2.4-4.1 min (110,917-193,643 bp) region9 for bacterial growth10 coli: relationship to eukaryotic multidrug resistance11 regulated by nitrogen in Escherichia coli12 Hill,C.W.12 Hill,C.W. and unique components that have different evolutionary histories13 and regulation of its expression14 ribosomal RNA by RNase E in vitro15 regulator gene for exopolysaccharide synthesis that suppresses the15 regulator gene for exopolysaccharide synthesis that suppresses the division mutation ftsZ84 in Escherichia coli K-1216 of the mukB null mutant of Escherichia coli17 Escherichia coli18 fibronectin binding in Escherichia coli HB10119 folK, the gene coding for19 folK, the gene coding for 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase20 Escherichia coli acetyl-CoA carboxylase21 Isono,K., Mizobuchi,K. and Nakata,A.21 Isono,K., Mizobuchi,K. and Nakata,A. the 0-2.4 min region22 Vibrio cholerae23 K-12 pyrH gene encoding UMP kinase24 the electric organ of Torpedo californica25 anaerobic expression of the Escherichia coli hexaheme nitrite25 anaerobic expression of the Escherichia coli hexaheme nitrite reductase26 and Short,S.A.26 and Short,S.A. effect of covalent modification of proteins with polyethylene26 and Short,S.A. effect of covalent modification of proteins with polyethylene glycol27 factor cistron (frr)28 translation30 Choi,Y.L. and Komano,T.30 Choi,Y.L. and Komano,T. involved in CRP*-dependent mal gene expression in Escherichia coli31 genomes of Escherichia coli, Salmonella typhimurium and other31 genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria32 glutathione-regulated potassium-efflux system KefC of Escherichia32 glutathione-regulated potassium-efflux system KefC of Escherichia coli33 caulinodans ORS571: similarity of the fixB product with eukaryotic33 caulinodans ORS571: similarity of the fixB product with eukaryotic flavoproteins, characterization of fixX, and identification of nifW34 Hobbs,M. and Egerton,J.R.34 Hobbs,M. and Egerton,J.R. representative of Bacteroides nodosus serotypes A to I: class I and34 Hobbs,M. and Egerton,J.R. representative of Bacteroides nodosus serotypes A to I: class I and class II strains35 messenger RNA from spliceosomes36 the Escherichia coli K-12 chromosome37 expression, and comparison with known enterobacterial ompH37 expression, and comparison with known enterobacterial ompH sequences39 firA200(Ts) allele from Escherichia coli40 porphyrin synthesis in a cyanobacterium and Escherichia coli41 expression of type 3 fimbriae in Klebsiella pneumoniae42 alpha-like DNA polymerase43 Eubacterium sp. strain VPI 1270845 Escherichia coli46 exclusive sets of sequence motifs47 phosphoribosyltransferase from Vibrio harveyi48 phosphotransferase system regulating the expression of the operon49 sequence, transcript mapping, and comparison with other peptidase49 sequence, transcript mapping, and comparison with other peptidase genes50 required for biogenesis of Pseudomonas aeruginosa pili52 that is a dosage-dependent suppressor of a dnaK deletion mutation53 from Escherichia coli56 amino acid transport protein of Escherichia coli K-12: homology56 amino acid transport protein of Escherichia coli K-12: homology with yeast transport proteins57 marcescens suggest a periplasmic-binding-protein-dependent iron57 marcescens suggest a periplasmic-binding-protein-dependent iron transport mechanism58 biovars of Rhizobium leguminosarum60 circinelloides62 mitochondrial enoyl-CoA hydratase. Structural and evolutionary62 mitochondrial enoyl-CoA hydratase. Structural and evolutionary relationships linked to the bifunctional enzyme of the peroxisomal62 mitochondrial enoyl-CoA hydratase. Structural and evolutionary relationships linked to the bifunctional enzyme of the peroxisomal beta-oxidation system63 Vockley,J., Ikeda,Y., Kraus,J. and Tanaka,K.63 Vockley,J., Ikeda,Y., Kraus,J. and Tanaka,K. precursors of rat long chain acyl-coenzyme A, short chain63 Vockley,J., Ikeda,Y., Kraus,J. and Tanaka,K. precursors of rat long chain acyl-coenzyme A, short chain acyl-coenzyme A, and isovaleryl-coenzyme A dehydrogenases. Sequence63 Vockley,J., Ikeda,Y., Kraus,J. and Tanaka,K. precursors of rat long chain acyl-coenzyme A, short chain acyl-coenzyme A, and isovaleryl-coenzyme A dehydrogenases. Sequence homology of four enzymes of the acyl-CoA dehydrogenase family64 operon of Escherichia coli K-1265 regulation66 termination regions of the speED operon68 coli gene involved in plasmid copy number control69 analysis of its 5' flanking region70 coli: a sigma 32-independent mechanism of heat-inducible70 coli: a sigma 32-independent mechanism of heat-inducible transcription72 Hahlbrock,K.72 Hahlbrock,K. by the two 4-coumarate: CoA ligase genes in parsley73 Escherichia coli K1274 cDNA sequence and localization of gene to chromosome 1675 activity in Escherichia coli76 from Pseudomonas syringae pv. tomato77 sequence of the lpxA gene78 of one of the three protein components of the inter-alpha-trypsin78 of one of the three protein components of the inter-alpha-trypsin inhibitor complex80 disaccharide synthase81 of a proenzyme form of S-adenosylmethionine decarboxylase82 Identification of additional genes of the hisT and purF operons83 Escherichia coli K-1285 Chang,S.85 Chang,S. of the Escherichia coli methionine aminopeptidase and its gene85 Chang,S. of the Escherichia coli methionine aminopeptidase and its gene structure86 and Puhler,A.86 and Puhler,A. leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC,86 and Puhler,A. leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC, nifA, nifB and a novel open reading frame87 Skopek,T.R.87 Skopek,T.R. Escherichia coli to N-methyl-N-nitrosourea or N-ethyl-N-nitrosourea88 analysis of operator mutants89 located immediately clockwise to folA and forms an operon with ksgA90 coli91 in Escherichia coli K12: presence of a strong terminator and an IS191 in Escherichia coli K12: presence of a strong terminator and an IS1 element92 of the fhuB gene and identification of the protein93 Lapointe,J.93 Lapointe,J. structure of the gltX gene and homology with other aminoacyl-tRNA93 Lapointe,J. structure of the gltX gene and homology with other aminoacyl-tRNA synthetases94 glucose-transporter protein95 Escherichia coli mutator gene96 purification of the gene product97 Rode,H.N.97 Rode,H.N. receptor of Escherichia coli K-1299 Kanaya,S.99 Kanaya,S. Bacillus coagulans. Comparison with the enzymes of Saccharomyces99 Kanaya,S. Bacillus coagulans. Comparison with the enzymes of Saccharomyces cerevisiae and Thermus thermophilus101 synthetase of Escherichia coli102 genes of Escherichia coli103 Identification of an open reading frame upstream of the ileS gene103 Identification of an open reading frame upstream of the ileS gene and potential promoter(s) for the ileS-lsp operon104 and Gross,C.A.105 penicillin-binding protein 1A and 1B of Escherichia coli K12106 Escherichia coli gdhA gene107 typhimurium108 gene109 coli dapD gene110 Escherichia coli111 Escherichia coli gpt gene in plasmid pSV2 gpt112 sequencing113 Escherichia coli carAB operon114 Chang,S. and Wu,H.C.114 Chang,S. and Wu,H.C. peptidase (lsp) gene115 heat-inducible dnaK gene are homologous116 phosphoribosyl transferase gene117 transferase gene of E. coli118 region of the threonine operon in Escherichia coli K12119 Escherichia coli K12120 Nucleotide sequence encoding the dihydrolipoamide acetyltransferase120 Nucleotide sequence encoding the dihydrolipoamide acetyltransferase component121 Nucleotide sequence encoding the pyruvate dehydrogenase component122 from a single-base change in the structural gene of RNase H123 phosphate limitation inducible outer membrane pore protein of123 phosphate limitation inducible outer membrane pore protein of Escherichia coli K12125 Escherichia coli araC gene conserved?126 Escherichia coli containing the genes for ribosomal protein S2 and126 Escherichia coli containing the genes for ribosomal protein S2 and elongation factor Ts127 flanking regions129 cells130 promoters, Pc and PBAD, in the L-arabinose regulatory region of130 promoters, Pc and PBAD, in the L-arabinose regulatory region of Escherichia coli131 adjacent regions; the thrAB and thrBC junctions133 Chalvignac,M.A., Le Bras,G., Cohen,G.N. and Yaniv,M.134 regulatory proteins and a mechanism of positive and negative134 regulatory proteins and a mechanism of positive and negative regulation135 reductase137 Escherichia coli K12139 III cleavage site in Escherichia coli ribosomal precursor RNA141 galactose operon of Escherichia coli142 (bases 1 to 4646332) Information, NIH, Bethesda, MD 20894, USA143 (bases 1 to 4646332) Biological Sciences, Nara Institute of Science and Technology;143 (bases 1 to 4646332) Biological Sciences, Nara Institute of Science and Technology; 8916-5 Takayama, Ikoma, Nara 630-0101, Japan	/workspace/rsat/public_html/data/genomes/Escherichia_coli_K_12_substr__W3110_uid161931/genome	316407	CON	DNA